BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047480
         (719 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/720 (69%), Positives = 594/720 (82%), Gaps = 2/720 (0%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFR 60
           KR +LE+ S L LLESCKS KQ LQIH Q + +GL+H I S S+LISFF+L G K+GL  
Sbjct: 3   KRFLLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDH 62

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           SR+LFSQID PN+F+WNT++RGYSRSD+P+EA+VLY SM++KGI  PNNFTFPF+LNSCA
Sbjct: 63  SRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA 122

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           RLSS + G ++H HIIK G E DLF+RNALIH YS+FG +N A  +F+ SL RDLVSYNT
Sbjct: 123 RLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNT 182

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GYA+V +P  AL LF +MQ+S I PD FTFVA+FS C+ LN+P +GKQ HA VYKNL
Sbjct: 183 MIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNL 242

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + SN+LLK+A+++MYAKCGL+N+AERVFSTMG SKS AAWSSM+ GY R G+I  AR+
Sbjct: 243 RSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARK 302

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF+ M +RD++SWTAMISGYSQ G  S+ALELF +ME+LGI PDEVT+VAVL AC  LGA
Sbjct: 303 LFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGA 362

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
            D GKRL+ QYIEN VF +N  LT AV+DMYAKCGSID+AL +F ++ KN+KT  +FNS+
Sbjct: 363 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 422

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I+GLAQHGLGET+I VFRE+   GLKPD VTFV VLCAC H GL+EEGK+ FESM N YG
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           IKPQMEHYGCMVDLL R G L+EAY L+Q MP++ANSVIWRALL+ACR H N KIGEIAG
Sbjct: 483 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAG 542

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           QKLL++E  HGA YVLLSN+LA+  +WEEARQVRK+M+D GI+KPPGWSYIE  G +HRF
Sbjct: 543 QKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRF 602

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
           +AS KSHPQ KEIELMLKDM M+LKSAGYVPNT QV+FD+DEEEKE+VVSYHSEKLALAF
Sbjct: 603 VASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAF 662

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GL+     +TIRI KNLRIC DCH AFKL+SEIY REI VRD +RFH F+ G+CSCMDFW
Sbjct: 663 GLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/601 (52%), Positives = 424/601 (70%), Gaps = 4/601 (0%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LISFFA +   N L  S +LF+QI NP++F++N ++R +S S +P  AL LY  MLS 
Sbjct: 14  TPLISFFAAAN-SNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSS 72

Query: 103 GI-VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
              + P+ FTFPF+L SCA+LS  + G Q+H H+ K G E ++F+ NAL+  Y +FG   
Sbjct: 73  SPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDAR 132

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           NA +VF+ S  RD VSYNT+ING  +      ++ +F +M+   ++PD +TFVA+ SAC+
Sbjct: 133 NACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACS 192

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L D  IG+  H +VY+ LGC G N LL  A+++MYAKCG + +AERV          AA
Sbjct: 193 LLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAA 252

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W+S++S Y   G++E AR+LFDQM +RD+VSWTAMISGY   G F +ALELF ++E LG+
Sbjct: 253 WTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGM 312

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV-VFGRNIFLTTAVIDMYAKCGSIDTA 400
            PDEV +VA L AC  LGAL+ G+R+H +Y  +    G N   T AV+DMYAKCGSI+ A
Sbjct: 313 EPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAA 372

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
           L VF K   ++KT  L+NSI+SGLA HG GE ++A+F EM L+GL+PD VT+V +LCAC 
Sbjct: 373 LDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACG 432

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLV+ GK+ FESML+ YG+ PQMEHYGCMVDLL R G L+EAY LIQ+MP+ AN+VIW
Sbjct: 433 HSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIW 492

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
           RALL+AC++  + ++  +A Q+LL +E DHGA YV+LSNML    + +EA  VR+ +D+ 
Sbjct: 493 RALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNV 552

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
           GIQKPPGWS++E NGTLH+FLA  KSHP+ K  E ML+D+ M LKS G+  +  ++VFDV
Sbjct: 553 GIQKPPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDIDMGLKSIGHSISVSKMVFDV 612

Query: 640 D 640
           D
Sbjct: 613 D 613


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/623 (51%), Positives = 444/623 (71%), Gaps = 8/623 (1%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           L +  + +LL SCK+++QA QI+  I+ +G ++++  S+ L +F+A S     L  S  L
Sbjct: 12  LSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTL 71

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR-- 121
           F+QI NP+IF+WN +++ YS+  SP Q    L+ +ML+  ++ P++FTFPF+L +CA   
Sbjct: 72  FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVL-PDSFTFPFLLKACANVL 130

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           +S+ + G Q+HCH+++ G   D+F+ NAL++FY  FG + NA+KVF+ S  RD VS+NT+
Sbjct: 131 ISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTM 190

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           ING+A+  +      +F +M+  C++PD +TFVA+ S C+ L D RIG+Q H +VY+ LG
Sbjct: 191 INGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELG 250

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST-AAWSSMISGYTREGKIERARQ 300
           C G N+LL   +++MYAKCG + MAE V S +   KS  AAW+S++S Y   G+++ AR+
Sbjct: 251 CFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARR 310

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LFDQM +RD+VSWTAMISGYS  G F +ALELF K+E LG+ PDEV +VA L AC  LGA
Sbjct: 311 LFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGA 370

Query: 361 LDFGKRLHQQYI-ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           L+ G+R+H+QY  EN     N   T+AV+DMYAKCGSID AL VF K   + KT  L+NS
Sbjct: 371 LELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNS 430

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           IISGLA HG GE +  +F EM L+GLKPD +TFV VL AC H GLV+ GK+ FESM   Y
Sbjct: 431 IISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVY 490

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G+ P+MEHYGCMVDLL R G LDEA+ LI  MP+ AN+VIWRALL+AC++H +  +  +A
Sbjct: 491 GVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVA 550

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
             +L++L+ DHGA YV+LSNML++T + +EA  +RK +D+ GIQKPPGWSY+E N +LH+
Sbjct: 551 SYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHK 610

Query: 599 FLASKKSHPQTKEIELMLKDMTM 621
           FLA  KSHP+ K  ELML+D+ +
Sbjct: 611 FLAGDKSHPEAKTTELMLRDINI 633



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 223/505 (44%), Gaps = 83/505 (16%)

Query: 99  MLSKGIVSP---NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
           M +K ++ P   +N     +L+SC    + +   QI+ HII  G   +L +   L  FY+
Sbjct: 1   MATKHVILPRFLSNERIKSLLSSC---KTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYA 57

Query: 156 ---IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP-ALWLFRKMQDSCIQPDAF 211
                  ++++H +F      D+  +N +I  Y+Q+  P      LF+ M +S + PD+F
Sbjct: 58  SSSSSQSLHHSHTLFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSF 117

Query: 212 TFVAMFSACTE--LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
           TF  +  AC    ++ P+ G Q H  V +N    GS++ +  A++N Y   G +  A +V
Sbjct: 118 TFPFLLKACANVLISAPQFGFQVHCHVLRN--GFGSDVFVNNALLNFYCGFGDVVNAYKV 175

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F      +   ++++MI+G+ R+G +                               S  
Sbjct: 176 FDE-SFVRDCVSFNTMINGFARKGDV-------------------------------SGC 203

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ-QYIENVVFGRNIFLTTAVI 388
             +FG+M  + + PDE T VA+L  C  L     G+++H   Y E   FG N+ L   ++
Sbjct: 204 FRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLV 263

Query: 389 DMYAKCGSI---DTALSVF----------------------YKIPKNL------KTVSLF 417
           DMYAKCG +   +T LSV                        K+ + L      + V  +
Sbjct: 264 DMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSW 323

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
            ++ISG +  G  + ++ +F ++E +G+KPD V  V  L AC+  G +E G++       
Sbjct: 324 TAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAG 383

Query: 477 -NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAACRLHRNAKI 534
            N+           +VD+ A+ G +D A  + +    D  +  ++ ++++    H   + 
Sbjct: 384 ENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEY 443

Query: 535 GE--IAGQKLLDLEPDHGAHYVLLS 557
            +       LL L+PD+     +LS
Sbjct: 444 AKNLFEEMGLLGLKPDNITFVAVLS 468


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/543 (58%), Positives = 393/543 (72%), Gaps = 40/543 (7%)

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQP-DAFTFVAMFSACTELNDPRIGKQFHAVV 236
           +NT+I GY++   P  A+ L+  M    I P + FTF  + ++C  L+    G + H+ +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K+     S++ ++ A+I++Y+  G +N+A                              
Sbjct: 62  IKH--GFESDLFVRNALIHLYSVFGNLNLA------------------------------ 89

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
             R LFD+   RDLVS+  MI GY++V     AL LFG+M++     DEVT+VAVL AC 
Sbjct: 90  --RTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQN----SDEVTLVAVLSACA 143

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            LGA D GKRL+ QYIEN VF +N  LT AV+DMYAKCGSID+AL +F ++ KN+KT  +
Sbjct: 144 RLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFV 203

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           FNS+I+GLAQHGLGET+I VFRE+   GLKPD VTFV VLCAC H GL+EEGK+ FESM 
Sbjct: 204 FNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMF 263

Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           N YGIKPQMEHYGCMVDLL R G L+EAY L+Q MP++ANSVIWRALL+ACR H N KIG
Sbjct: 264 NAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIG 323

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           EIAGQKLL++E  HGA YVLLSN+LA+  +WEEARQVRK+M+D GI+KPPGWSYIE  G 
Sbjct: 324 EIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGA 383

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +HRF+AS KSHPQ KEIELMLKDM M+LKSAGYVPNT QV+FD+DEEEKE+VVSYHSEKL
Sbjct: 384 IHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKL 443

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           ALAFGL+     +TIRI KNLRIC DCH AFKL+SEIY REI VRD +RFH F+ G+CSC
Sbjct: 444 ALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSC 503

Query: 716 MDF 718
           MDF
Sbjct: 504 MDF 506



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/411 (38%), Positives = 231/411 (56%), Gaps = 45/411 (10%)

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
           +WNT++RGYSRSD+P+EA+VLY SM++KGI  PNNFTFPF+LNSCARLSS + G ++H H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           IIK G E DLF+RNALIH YS+FG +N A  +F+ SL RDLVSYNT+I GYA+V +P  A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L LF +MQ+S    D  T VA+ SAC  L    +GK+ +    +N G    N +L  AV+
Sbjct: 121 LCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIEN-GVFNQNTILTAAVM 175

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTA-AWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           +MYAKCG ++ A  +F  +G +  T   ++SMI+G  + G  E A  +F     R+L+  
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVF-----RELI-- 228

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                                   S G+ PDEVT V VL AC   G ++ GK+L +    
Sbjct: 229 ------------------------STGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFN 264

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LG 430
                  +     ++D+  + G ++ A  +  K+P    +V ++ +++S    HG   +G
Sbjct: 265 AYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSV-IWRALLSACRTHGNVKIG 323

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           E +     EME       G  +V +    +     EE +Q  + M ++GI+
Sbjct: 324 EIAGQKLLEME----AQHGARYVLLSNILADANQWEEARQVRKVMEDHGIR 370



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 157/338 (46%), Gaps = 19/338 (5%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL SC    SL+   ++H  I+  G    +   + LI  +++ G  N    +R LF +  
Sbjct: 41  LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLN---LARTLFDESL 97

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             ++  +NT+++GY+  + P+ AL L+  M +      +  T   VL++CARL +F  G 
Sbjct: 98  VRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS-----DEVTLVAVLSACARLGAFDLGK 152

Query: 130 QIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGYA 186
           +++   I+ G+   +  +  A++  Y+  G I++A ++F   G   +    +N++I G A
Sbjct: 153 RLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLA 212

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+ +FR++  + ++PD  TFV +  AC        GK+    ++   G +   
Sbjct: 213 QHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG-IKPQ 271

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFD 303
           M     ++++  + G +  A  +   M    ++  W +++S     G +   E A Q   
Sbjct: 272 MEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLL 331

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +M+ +    +  + +  +    + +A ++   ME  GI
Sbjct: 332 EMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGI 369


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/710 (44%), Positives = 468/710 (65%), Gaps = 8/710 (1%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++LLE+C+S+ Q  Q+H Q +  GLN +      +  F  +        +R LF +I  
Sbjct: 21  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+FIWNT++RGYSR D PQ  + LY  ML +G V P+ +TFPF+     R  + + G Q
Sbjct: 81  PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRG-VKPDRYTFPFLFKGFTRDIALEYGRQ 139

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H H++K GL++++F+  AL+  Y + G ++ A  VF+     D++++N +I+ Y +V +
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              +  LF  M+D  + P   T V + SAC++L D R GK+ H+ V KN   V SN++L+
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCK-VESNLVLE 257

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+MYA CG M+ A  +F +M  ++   +W++++SG+T  G+I+ AR  FD+M ++D 
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSWTAMI GY +   F +ALELF  M++  + PDE TMV+VL AC  LGAL+ G+ + + 
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI-RT 375

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           YI+      ++F+  A+IDMY KCG +D A S+F ++ +  K    + ++I GLA +G G
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT--WTAMIVGLAVNGHG 433

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
           E ++ +F  M    + PD +T++ VL AC+H GLV++G+++F  M + +GI+P + HYGC
Sbjct: 434 EKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 493

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           +VDLLAR GRL EAY +I++MP  ANS++W ALLA CR++R + + E+  +++L+LEPD+
Sbjct: 494 LVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDN 553

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
           GA YVLL N+ A   RW + R++R++M D GI+K PG S IE NG +H F+A  +SHPQT
Sbjct: 554 GAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQT 613

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           K I+  L  MT  LK AGY P+  +V  D+ EE+KE  V  HSEKLA+AFGLINS    T
Sbjct: 614 KNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVT 673

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRITKNLR+C DCH   KL+S++Y RE++VRD  RFH FK G CSC D+W
Sbjct: 674 IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/710 (44%), Positives = 468/710 (65%), Gaps = 8/710 (1%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++LLE+C+S+ Q  Q+H Q +  GLN +      +  F  +        +R LF +I  
Sbjct: 42  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 101

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+FIWNT++RGYSR D PQ  + LY  ML +G V P+ +TFPF+     R  + + G Q
Sbjct: 102 PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRG-VKPDRYTFPFLFKGFTRDIALEYGRQ 160

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H H++K GL++++F+  AL+  Y + G ++ A  VF+     D++++N +I+ Y +V +
Sbjct: 161 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 220

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              +  LF  M+D  + P   T V + SAC++L D R GK+ H+ V KN   V SN++L+
Sbjct: 221 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCK-VESNLVLE 278

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+MYA CG M+ A  +F +M  ++   +W++++SG+T  G+I+ AR  FD+M ++D 
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSWTAMI GY +   F +ALELF  M++  + PDE TMV+VL AC  LGAL+ G+ + + 
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI-RT 396

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           YI+      ++F+  A+IDMY KCG +D A S+F ++ +  K    + ++I GLA +G G
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT--WTAMIVGLAVNGHG 454

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
           E ++ +F  M    + PD +T++ VL AC+H GLV++G+++F  M + +GI+P + HYGC
Sbjct: 455 EKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 514

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           +VDLLAR GRL EAY +I++MP  ANS++W ALLA CR++R + + E+  +++L+LEPD+
Sbjct: 515 LVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDN 574

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
           GA YVLL N+ A   RW + R++R++M D GI+K PG S IE NG +H F+A  +SHPQT
Sbjct: 575 GAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQT 634

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           K I+  L  MT  LK AGY P+  +V  D+ EE+KE  V  HSEKLA+AFGLINS    T
Sbjct: 635 KNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVT 694

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRITKNLR+C DCH   KL+S++Y RE++VRD  RFH FK G CSC D+W
Sbjct: 695 IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 315/719 (43%), Positives = 480/719 (66%), Gaps = 16/719 (2%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFR---S 61
           L  +  L+L+++CKS+ Q  QIH Q + +GL ++ I  +Q+I+F     CK+ L     +
Sbjct: 17  LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC----CKHELGDMEYA 72

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R++F  +  PN F+WN +++GYSR   P  A+ +Y  ML +G++ P+ +T+PF+L    R
Sbjct: 73  RMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVM-PDEYTYPFLLKRFTR 131

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            ++ K G ++H HI+K G   ++F++NALIH YS+ G ++ A  VF+ S   D+V++N +
Sbjct: 132 DTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVM 191

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+GY + K+   ++ LF +M+   + P + T V++ SAC++L D  +GK+ H  V K+L 
Sbjct: 192 ISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV-KDLK 250

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            +    +L+ A+I+MYA CG M+ A  +F  M  S+   +W+++++G+T  G++  AR  
Sbjct: 251 -IEPVRVLENALIDMYAACGDMDTALGIFDNMK-SRDVISWTAIVTGFTNLGQVGLARNY 308

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           FD+M +RD VSWTAMI GY QV  F + L LF +M++  I PDE TMV++L AC  LGAL
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 368

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           + G+ + + YI+      + F+  A+IDMY  CG+++ A+ +F  +P   K    + ++I
Sbjct: 369 ELGEWI-KAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKIS--WTAVI 425

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
            GLA +G GE ++ +F +M    + PD VT + VLCAC+H G+V++GK+FF  M   +GI
Sbjct: 426 FGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGI 485

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P + HYGCMVDLL R G L EA+ +I++MP   NS++W +LL ACR+HR+ ++ E+A Q
Sbjct: 486 EPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQ 545

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           ++L+LEP++GA YVLL N+ A   RWE+  +VRKLM D GI+K PG S IE NG++H F+
Sbjct: 546 QILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFV 605

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A  + HPQ+KEI   L +M++ LK AGY P+T +V  D+ EEEKE+ V  HSEKLA+AFG
Sbjct: 606 AGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFG 665

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI+S    TIRI KNLR+C DCH   KL+S++Y RE++VRD  RFH F+ G+CSC D+W
Sbjct: 666 LISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/711 (43%), Positives = 461/711 (64%), Gaps = 8/711 (1%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           S ++LLE CKS+ Q  QIH   +  GL+      + +  F  +     +  +R +F  I 
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            P +FIWNT+++GYSR + PQ  + +Y  ML+  I  P+ FTFPF+L    R  + + G 
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNI-KPDRFTFPFLLKGFTRNMALQYGK 127

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +  H +K G + +LF++ A IH +S+   ++ A KVF+   A ++V++N +++GY +VK
Sbjct: 128 VLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVK 187

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           +   +  LF +M+   + P++ T V M SAC++L D   GK  H   Y N G V  N++L
Sbjct: 188 QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK--HIYKYINGGIVERNLIL 245

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +  +I+M+A CG M+ A+ VF  M  ++   +W+S+++G+   G+I+ AR+ FDQ+ +RD
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANIGQIDLARKYFDQIPERD 304

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            VSWTAMI GY ++  F +AL LF +M+   + PDE TMV++L AC  LGAL+ G+ + +
Sbjct: 305 YVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV-K 363

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YI+      + F+  A+IDMY KCG++  A  VF ++    K    + ++I GLA +G 
Sbjct: 364 TYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFT--WTAMIVGLAINGH 421

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
           GE ++A+F  M    + PD +T++ VLCAC+H G+VE+G+ FF SM + +GIKP + HYG
Sbjct: 422 GEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYG 481

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R GRL+EA+ +I +MP   NS++W +LL ACR+H+N ++ E+A +++L+LEP+
Sbjct: 482 CMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPE 541

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +GA YVLL N+ A   RWE  RQVRKLM + GI+K PG S +E NG ++ F+A  +SHPQ
Sbjct: 542 NGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQ 601

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
           +KEI   L++M   L  AGY P+T +V  D+ EE+KET +  HSEKLA+A+ LI+S    
Sbjct: 602 SKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGI 661

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           TIRI KNLR+C DCH   KL+SE Y RE++VRD  RFH F+ G+CSC +FW
Sbjct: 662 TIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 304/713 (42%), Positives = 460/713 (64%), Gaps = 13/713 (1%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+L++ C   KQ  QIH Q++ +GL     S+S+LI+  ALS   + L  ++ +F QI +
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPS-LDYAQQVFDQIPH 97

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN++ WNTL+R Y+ S +P ++L+++  ML +    P+ FTFPF++ + + L    +G  
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
            H  +IK  L  D+FI N+LIHFY+  G +   ++VF     RD+VS+N++I  + Q   
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGC 217

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL LF++M+   ++P+  T V + SAC + +D   G+  H+ + +N   +G ++ L 
Sbjct: 218 PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR--IGESLTLS 275

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+++MY KCG +  A+R+F  M   K   +W++M+ GY + G+ + A+ +FD M  +D+
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDI 334

Query: 311 VSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            +W A+IS Y Q G   +ALELF +++ S    PDEVT+V+ L AC  LGA+D G  +H 
Sbjct: 335 AAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHV 394

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YI+      N  LTT++IDMY KCG +  AL VF+ + +  K V +++++I+GLA HG 
Sbjct: 395 -YIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER--KDVFVWSAMIAGLAMHGH 451

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
           G+ +IA+F +M+   +KP+ VTF  +LCACSH GLVEEG+ FF  M L YG+ P ++HY 
Sbjct: 452 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 511

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP- 547
           CMVD+L R G L+EA  LI+ MP    + +W ALL AC +H N  + E A  +L++LEP 
Sbjct: 512 CMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 571

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           +HGA YVLLSN+ A+  +W+    +RKLM D G++K PG S IE +G +H FL    SHP
Sbjct: 572 NHGA-YVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHP 630

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSRS 666
             K+I   L ++  +L++ GYVPN   ++  V+EE+ KE  +  HSEKLA+AFGLI++  
Sbjct: 631 SAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQ 690

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + IRI KNLR+CGDCH   KL+S++Y REI++RD  RFH F++G+CSCMD+W
Sbjct: 691 SQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 315/752 (41%), Positives = 460/752 (61%), Gaps = 76/752 (10%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           +L+  H SL  LL +CKS +   QIH QI+ +GL N   + S+LI F A+S   N L  +
Sbjct: 28  KLLQNHPSL-TLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGN-LSYA 85

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            +LF  I+ PN FIWNT++RG S S SP  A+  Y  ML  G V PN++TFPF+L SCA+
Sbjct: 86  LLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCAK 144

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-------------------------- 155
           + + + G QIH H++K GLE D F+  +LI+ Y+                          
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 156 IFGY-----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           I GY     +++A ++FE    RD VS+N +I GYAQ      AL  F++M+ + + P+ 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V + SAC +     +G    + +  +   +GSN+ L  A+I+MY+KCG         
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDH--GLGSNLRLVNALIDMYSKCG--------- 313

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                   +++AR LF+ + ++D++SW  MI GYS +  + +AL
Sbjct: 314 -----------------------DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-RNIFLTTAVID 389
            LF KM+   + P++VT V++L AC  LGALD GK +H  YI+    G  N  L T++ID
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHA-YIDKKFLGLTNTSLWTSLID 409

Query: 390 MYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           MYAKCG+I+ A  VF  + PK+L +   +N++ISGLA HG    ++ +FR+M   G +PD
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGS---WNAMISGLAMHGHANMALELFRQMRDEGFEPD 466

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            +TFV VL ACSH GLVE G+Q F SM+ +Y I P+++HYGCM+DLL R G  DEA  L+
Sbjct: 467 DITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
           ++M    +  IW +LL ACR+H N ++GE A + L +LEP++   YVLLSN+ A   RW+
Sbjct: 527 KNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWD 586

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           +  ++R  ++D G++K PG S IE +  +H FL   K H Q+++I  ML ++   L+ AG
Sbjct: 587 DVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAG 646

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           +VP+T +V++D+DEE KE  +S+HSEKLA+AFGLI+++ + TIRI KNLR+CG+CH A K
Sbjct: 647 HVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIK 706

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+S+I+ REI+ RD  RFH FK G+CSCMD+W
Sbjct: 707 LISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/701 (42%), Positives = 442/701 (63%), Gaps = 25/701 (3%)

Query: 20  SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           +L+Q  QIH  I+ +  +H +          L+   +GL  S    +Q        WN +
Sbjct: 55  TLEQTKQIHAHIIKTHFHHALQ-------IPLNDFPSGLSPS----AQ--------WNFV 95

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           +  Y++ + P+ AL +Y + L K     +NF  P VL +C ++S  + G +IH  ++K G
Sbjct: 96  ITSYTKRNQPRNALNVY-AQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG 154

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           L+ D+F+ NAL+  Y     +  A  VF+  + RD+VS++T+I   ++ KE   AL L R
Sbjct: 155 LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIR 214

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M    ++P     V+M +   +  + R+GK  HA V +N       +   TA+++MYAK
Sbjct: 215 EMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAK 274

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CG + +A ++F+ +   K+  +W++MI+G  R  ++E AR LFD    RD++ WTAM+S 
Sbjct: 275 CGHLGLARQLFNGL-TQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSA 333

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           Y+Q     QA  LF +M + G+ P +VT+V++L  C   GALD GK +H  YI+      
Sbjct: 334 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS-YIDKERVEV 392

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           +  L TA++DMYAKCG I+ A  +F  I    + + ++N+II+G A HG GE ++ +F E
Sbjct: 393 DCILNTALVDMYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAE 450

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           ME  G+KP+ +TF+ +L ACSH GLV EGK+ FE M++ +G+ PQ+EHYGCMVDLL R G
Sbjct: 451 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 510

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
            LDEA+ +I+SMP   N+++W AL+AACRLH+N ++GE+A  +LL++EP++  + VL+SN
Sbjct: 511 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSN 570

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + A   RW +A  VRK M   G++K PG S IE NGT+H FL   +SHPQ + I  ML +
Sbjct: 571 IYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAE 630

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           M  KL  AGYVP+T  V+ ++DEEEKET ++YHSEKLA+AFGLI++     IRI KNLR+
Sbjct: 631 MRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRV 690

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           C DCH A KLLS+IY R I+VRD  RFH F++G CSC D+W
Sbjct: 691 CNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 184/455 (40%), Gaps = 84/455 (18%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           +P     P    S   LS+ +   QIH HIIK              HF+       N   
Sbjct: 37  NPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIK-------------THFHHALQIPLND-- 81

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
            F   L+     +N +I  Y +  +P  AL ++ +++    + D F   ++  AC +++ 
Sbjct: 82  -FPSGLSPS-AQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSW 139

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
            ++GK+ H  V K    +  ++ +  A++ MY +C  +  A  VF  M M +   +WS+M
Sbjct: 140 TQLGKEIHGFVLKK--GLDRDVFVGNALMLMYGECACVEYARLVFDKM-MERDVVSWSTM 196

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I   +R  +                               F  ALEL  +M  + + P E
Sbjct: 197 IRSLSRNKE-------------------------------FDMALELIREMNFMQVRPSE 225

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR-NIFLTTAVIDMYAKCGSIDTALSVF 404
           V MV+++        +  GK +H   I N       +  TTA++DMYAKCG +  A  +F
Sbjct: 226 VAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLF 285

Query: 405 YKIPKNL-----------------------------KTVSLFNSIISGLAQHGLGETSIA 435
             + +                               + V ++ +++S  AQ    + +  
Sbjct: 286 NGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFN 345

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           +F +M   G++P  VT V++L  C+  G ++ GK     +    ++        +VD+ A
Sbjct: 346 LFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYA 405

Query: 496 RDGRLDEAYGL-IQSMPYDANSVIWRALLAACRLH 529
           + G ++ A  L I+++  D    +W A++    +H
Sbjct: 406 KCGDINAAGRLFIEAISRDI--CMWNAIITGFAMH 438


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 301/714 (42%), Positives = 443/714 (62%), Gaps = 45/714 (6%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           H  LL+L E C ++ Q  QIH Q++ + L     S+S++++F AL      L  +R++F+
Sbjct: 41  HPCLLSL-EKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHD-SGSLPYARLVFN 98

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           QI NP  F  N+++RGY+  + P++A++ Y  M+ +G+  P+ FTFP +  SC  L    
Sbjct: 99  QIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGL-DPDRFTFPSLFKSCGVLCE-- 155

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+HCH  K G   D +I+N L++ YS  G + +A KVF+  + + +VS+ T+I  YA
Sbjct: 156 -GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q   P  A+ LFR+M+ + ++P+  T V + +AC    D    KQ H   Y +   +G +
Sbjct: 215 QWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHK--YIDETGIGFH 272

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            +L +A++++Y KCG   +A                                R LF++M 
Sbjct: 273 TVLTSALMDVYCKCGCYPLA--------------------------------RDLFNKMP 300

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +++L  W  MI+G+ +   + +AL LF +M+  G+  D+VTM ++L AC  LGAL+ GK 
Sbjct: 301 EKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKW 360

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH  YIE      ++ L TA++DMYAKCGSI++A+ VF ++P+  K V  + ++I GLA 
Sbjct: 361 LHV-YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE--KDVMTWTALIVGLAM 417

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
            G G  ++ +F EM++  +KPD +TFV VL ACSH GLV EG  +F SM N YGI+P +E
Sbjct: 418 CGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIE 477

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVD+L R GR+ EA  LIQ+MP   +  +   LL+ACR+H N  + E A Q+L++L
Sbjct: 478 HYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIEL 537

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +P +G  YVLLSN+ +    WE A+++R+LM +  I+KPPG S IE  G +H F+    S
Sbjct: 538 DPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVS 597

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQ+ EI   L DM  +LKSAGYVP+  +V+FD+DE+EKE  +S HSEKLA+AFGL+++ 
Sbjct: 598 HPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTT 657

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IR+ KNLR+C DCH A K +SE+Y REI+VRD  RFH F KG+CSC DFW
Sbjct: 658 PGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/721 (40%), Positives = 453/721 (62%), Gaps = 13/721 (1%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSR 62
           L+  +  +L+ ++ C S KQ  ++H +++ +GL     S+S+L +  ALS     L  +R
Sbjct: 21  LLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFST-LDYAR 79

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF QI  PN++ WNTL+R Y+ S  P ++ V++  +L K    PN FTFPFV+ + + L
Sbjct: 80  NLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASEL 139

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            + + G  +H   IK     DL+I N+L+ FY   G ++ A ++F+G   +D+VS+N++I
Sbjct: 140 KASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMI 199

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + +AQ   P  AL LF KM+   + P++ T V + SAC +  D   G+   + + +    
Sbjct: 200 SAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERK--G 257

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  ++ L  A+++MY KCG ++ A+++F  M   +   +W+ M+ GY + G  + AR +F
Sbjct: 258 IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP-ERDVFSWTIMLDGYAKMGDYDAARLVF 316

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPDEVTMVAVLRACVGLGAL 361
           + M  +++ +W  +IS Y Q G   +AL +F +++   I  PDEVT+V+ L AC  LGA+
Sbjct: 317 NAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAI 376

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D G  +H  YI+      N  L ++++DMYAKCGS++ AL VFY + +  + V +++++I
Sbjct: 377 DLGGWIHV-YIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE--RDVYVWSAMI 433

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
           +GL  HG G+ +I +F EM+   +KP+ VTF  VLCACSH GLV+EG+ FF  M   YG+
Sbjct: 434 AGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGV 493

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P+M+HY CMVD+L R G L+EA  LI  M    ++ +W ALL AC LH N ++GE+A  
Sbjct: 494 VPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASD 553

Query: 541 KLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +LL LEP +HGA  VLLSN+ A+T RWE+  ++RKLM D+ ++K PG S IE NG +H F
Sbjct: 554 QLLKLEPRNHGA-IVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEF 612

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALA 658
           L    +HP +  I   L+++  KLKS GY PN   ++  ++E++ KE  +S HSEKLA+A
Sbjct: 613 LVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIA 672

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGL+     + IR+ KNLRICGDCH   KL+S +Y R+I++RD  RFH F+ G+CSCMD+
Sbjct: 673 FGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDY 732

Query: 719 W 719
           W
Sbjct: 733 W 733


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/706 (43%), Positives = 446/706 (63%), Gaps = 43/706 (6%)

Query: 18  CKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           C S+ +  Q H  ++ + L H+ + SS+LISF ALS   + L  +R LF+Q+ NP+ FI 
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGD-LNYARKLFTQMQNPDPFIC 79

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           NT++RGY+RS +P EA+ LY  M+ +G V  +N+T+PFVL +CARL + K G + HC ++
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRFHCEVL 138

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G   DLF+ NALI FY   G    A  VF+ S  RD+V++N +IN +        A  
Sbjct: 139 KNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFD 198

Query: 197 LFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
           L  +M     ++PD  T V++  AC +L +   GK  H+   K LG +  N+ +  A+++
Sbjct: 199 LLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY-SKELG-LDENLRVNNAILD 256

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MY KC                                  IE A+++F+++ ++D++SWT+
Sbjct: 257 MYCKCD--------------------------------DIESAQEVFNRIREKDVLSWTS 284

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           M+SG ++ G F +AL LF KM+   I  DE+T+V VL AC   GALD GK +H   I+  
Sbjct: 285 MLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHL-LIDKF 343

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
               ++ L TA++DMYAKCGSID AL VF ++   ++ V  +N++I GLA HG GE +I+
Sbjct: 344 EINCDLVLETALVDMYAKCGSIDLALQVFRRM--RVRNVFTWNALIGGLAMHGHGEDAIS 401

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLL 494
           +F +ME   L PD VTF+ +LCACSH GLV+EG   F++M N + I+P+MEHYGC+VDLL
Sbjct: 402 LFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLL 461

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R  ++D+A   I++MP  ANSV+W  LL ACR   +  + E  G+++++LEPD    YV
Sbjct: 462 CRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYV 521

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           +LSN+ A   +W+ A ++RK M + GI+K PG S+IE NG +H+F+A  +SH QT++I  
Sbjct: 522 MLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYA 581

Query: 615 MLKDMTMKLK-SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
           M+++MT ++    G+VP T  V+FD++EEEKE  +  HSEKLA+A GLI++ S   IRI 
Sbjct: 582 MIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIV 641

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR+C DCH   K+ S++Y REI+ RD  RFH FK+G+CSCMDFW
Sbjct: 642 KNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/707 (40%), Positives = 450/707 (63%), Gaps = 12/707 (1%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S ++LLE+C ++ +  QIH Q + +GL+ +H+  +++I  F  +     ++ +R +F +I
Sbjct: 37  SPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVI-IFCCTKESGDVYYARKVFDEI 95

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P++FIWNT+++GYSR +  +  + LY  ML   I  P+ FTFPF+L    +  + K G
Sbjct: 96  PQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNI-KPDGFTFPFLLKGFTKDMALKYG 154

Query: 129 CQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
             +  H +  G L+ +LF++   IH +S+ G +N A K+F+     ++V++N +++GY +
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR 214

Query: 188 VKEPCPALWLFRKMQD--SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            K    +  LF +M+    C+ P++ T V M SAC++L D   GK  +    K  G V  
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKE-GIVEP 273

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N++L+ A+I+M+A CG M+ A  VF  M  ++   +W+S+++G+    +I+ AR+ FDQM
Sbjct: 274 NLILENALIDMFASCGEMDAARGVFDEMK-TRDVISWTSIVTGFANTCRIDLARKYFDQM 332

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            +RD VSWTAMI GY ++  F + L LF  M+   + PDE TMV++L AC  LGAL+ G+
Sbjct: 333 PERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGE 392

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
              + YI+      + F+  A+IDMY KCG+++ A  +F ++ K  K    + ++I GLA
Sbjct: 393 -WAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFT--WTAMIVGLA 449

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            +G GE ++ +F  M    + PD +T++ V+CAC+H GLV +GK FF +M + +GIKP +
Sbjct: 450 NNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNL 509

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
            HYGCMVDLL R G L EA  +I +MP   NS++W +LL ACR+H+N ++ E+A  ++L+
Sbjct: 510 THYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE 569

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           LEP++GA YVLL N+ A   +W+    VRK+M + GI+K PG S +E NG ++ F+A  K
Sbjct: 570 LEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDK 629

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHPQ+KEI   L++M   L +AGY P+T +V  DV EE+KET +  HSEKLA+A+ LI+S
Sbjct: 630 SHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISS 689

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
               TIRI KNLR+C DCH    ++S++Y RE++VRD  RFH F+ G
Sbjct: 690 GKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/660 (43%), Positives = 423/660 (64%), Gaps = 39/660 (5%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF QI  PNIF+WNT++RG   +D   +A+  Y  M S+G + PNNFTFPFVL +CA
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL-PNNFTFPFVLKACA 123

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           RL   + G +IH  ++K G + D+F++ +L+  Y+  GY+ +AHKVF+    +++VS+  
Sbjct: 124 RLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTA 183

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY  V +   A+ +FR++ +  + PD+FT V + SACT+L D   G+  H  + + +
Sbjct: 184 IISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIME-M 242

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G V  N+ + T++++MYAKCG M  A  VF  M   K   +W +MI GY   G  + A  
Sbjct: 243 GMV-RNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNGLPKEAID 300

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF QM + +                               + PD  T+V VL AC  LGA
Sbjct: 301 LFLQMQREN-------------------------------VKPDCYTVVGVLSACARLGA 329

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L+ G+ +    ++   F  N  L TA+ID+YAKCGS+  A  VF  + +  + V  +N+I
Sbjct: 330 LELGEWV-SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVV--WNAI 386

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           ISGLA +G  + S  +F ++E +G+KPDG TF+ +LC C+H GLV+EG+++F SM   + 
Sbjct: 387 ISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFS 446

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P +EHYGCMVDLL R G LDEA+ LI++MP +AN+++W ALL ACR+HR+ ++ E+A 
Sbjct: 447 LTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELAL 506

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           ++L++LEP +  +YVLLSN+ +   +W+EA +VR  M++  IQKPPG S+IE +G +H F
Sbjct: 507 KQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEF 566

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
           L   K HP +++I   L ++T K+K AGYVP T  V+FD++EEEKE  +  HSEKLA+AF
Sbjct: 567 LVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAF 626

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI++     IR+ KNLR+CGDCH+A KL+S I  REI VRD  RFH F++G+CSC D+W
Sbjct: 627 GLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/707 (40%), Positives = 442/707 (62%), Gaps = 39/707 (5%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           +LE CK+++   +IH  ++ + L      ++ +   A       +  +  +F QID P+ 
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDS 89

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
             +N ++RG++   SP EA++L+  M  +  V P+ FTFP +L  C+RL +   G QIH 
Sbjct: 90  PAYNIMIRGFTLKQSPHEAILLFKEM-HENSVQPDEFTFPCILKVCSRLQALSEGEQIHA 148

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            I+K G     F++N LIH Y+  G +  A +VF+    R++ ++N++  GY +      
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEE 208

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
            + LF +M +  I+ D  T V++ +AC  L D  +G+  +  V +  G  G+  L+ T++
Sbjct: 209 VVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK-GLKGNPTLI-TSL 266

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           ++MYAKC                                G+++ AR+LFDQMD+RD+V+W
Sbjct: 267 VDMYAKC--------------------------------GQVDTARRLFDQMDRRDVVAW 294

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           +AMISGYSQ     +AL+LF +M+   I P+E+TMV++L +C  LGAL+ GK +H  +I+
Sbjct: 295 SAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHF-FIK 353

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
                  + L TA++D YAKCGS+++++ VF K+P  +K V  +  +I GLA +G G+ +
Sbjct: 354 KKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP--VKNVLSWTVLIQGLASNGQGKKA 411

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVD 492
           +  F  M    ++P+ VTF+ VL ACSH GLV+EG+  F SM  ++GI+P++EHYGCMVD
Sbjct: 412 LEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVD 471

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           +L R G ++EA+  I++MP   N+VIWR LLA+C++H+N +IGE + ++L+ LEP H   
Sbjct: 472 ILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGD 531

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           Y+LLSN+ A   RWE+A +VR  M + GI+K PG S IE +G +H F A    H Q++EI
Sbjct: 532 YILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEI 591

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
              ++DM  ++KSAGYVPNT +   D +E++KE+ VS+HSEKLA+AFGLI S    TIRI
Sbjct: 592 YNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRI 651

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           TKNLR+C DCH A KL+S+++ REI+VRD  RFH FK+G+CSC D+W
Sbjct: 652 TKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 129/534 (24%), Positives = 235/534 (44%), Gaps = 63/534 (11%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L +    ++L +  QIH  I+  G   H    + LI  +A  G    +  +R +F ++ 
Sbjct: 130 ILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCG---EVEVARRVFDEMS 186

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  WN++  GY++S + +E + L+  ML   I   +  T   VL +C RL+  + G 
Sbjct: 187 ERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDI-RFDEVTLVSVLTACGRLADLELGE 245

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            I+ ++ + GL+ +  +  +L+  Y+  G ++ A ++F+    RD+V+++ +I+GY+Q  
Sbjct: 246 WINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQAS 305

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL LF +MQ + I P+  T V++ S+C  L     GK  H  + K    +   + L
Sbjct: 306 RCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKR--MKLTVTL 363

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            TA+++ YAKCG +  +  VF  M + K+  +W+ +I G    G+ ++            
Sbjct: 364 GTALMDFYAKCGSVESSIEVFGKMPV-KNVLSWTVLIQGLASNGQGKK------------ 410

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                              ALE F  M    + P++VT + VL AC   G +D G+ L  
Sbjct: 411 -------------------ALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFV 451

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG- 428
               +      I     ++D+  + G I+ A      +P     V ++ ++++    H  
Sbjct: 452 SMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAV-IWRTLLASCKVHKN 510

Query: 429 --LGETSIAVFREMELMGLKP----DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             +GE S+      +L+ L+P    D +    +  +    G  E+  +    M   GIK 
Sbjct: 511 VEIGEESLK-----QLIILEPTHSGDYILLSNIYASV---GRWEDALKVRGEMKEKGIKK 562

Query: 483 Q-----MEHYGCMVDLLARDG---RLDEAYGLIQSMPYDANSVIWRALLAACRL 528
                 +E  G + +  A D    + +E Y  I+ M     S  +    A  RL
Sbjct: 563 TPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARL 616


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/715 (40%), Positives = 447/715 (62%), Gaps = 11/715 (1%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S++  L++ C + K   Q+H  ++ +GL     S+++L +  ALS   +  +  ++ F Q
Sbjct: 31  STVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKV-FDQ 89

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I  PN++ WNTL+R ++ S  P + L+++  ML +    PN++TFPFV+ +   +SS  +
Sbjct: 90  IPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA 149

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH  ++K     DLFI N+LIHFYS  G +++A+ VF   + +D+VS+N++I+G+ Q
Sbjct: 150 GQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQ 209

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  AL LF++M+    +P+  T V + SAC +  D   G+   A  Y     +  N+
Sbjct: 210 GGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRW--ACDYIERNGIDINL 267

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           +L  A+++MY KCG +  A R+F  M   K   +W++MI GY + G  + AR++FD M +
Sbjct: 268 ILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR 326

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            D+ +W A+IS Y Q G   +AL +F +++ +    P+EVT+ + L AC  LGA+D G  
Sbjct: 327 EDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGW 386

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H  YI+      N  +TT++IDMY+KCG ++ AL VFY + +  + V +++++I+GLA 
Sbjct: 387 IHV-YIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER--RDVFVWSAMIAGLAM 443

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           HG G  +I +F +M+   +KP+ VTF  +LCACSH GLV+EG+ FF  M   YG+ P  +
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY CMVD+L R G L+EA  LI+ MP   ++ +W ALL ACR++ N ++ E+A  +LL+ 
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET 563

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           + ++   YVLLSN+ A+  +W+   ++R+ M  SG++K PG S IE NG +H FL    S
Sbjct: 564 DSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNS 623

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINS 664
           HP + EI   L ++  ++KS GYV +   ++  V+EE  KE  ++ HSEKLA+A+GLI  
Sbjct: 624 HPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRM 683

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              + IRI KNLR+CGDCH   KL+S++Y R+I++RD  RFH F  GNCSCMD+W
Sbjct: 684 EPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/708 (41%), Positives = 438/708 (61%), Gaps = 43/708 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALS-GCKNGLFRSRILFSQIDNPN 72
           L++    LK    IH  ++  GL+        +  F+ + G  N  FR   +  Q   PN
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFR---ILDQTKEPN 72

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           IF++NT++RG   +D  QE++ +Y SM  +G+ SP++FTFPFVL +CAR+   + G ++H
Sbjct: 73  IFLFNTMIRGLVLNDCFQESIEIYHSMRKEGL-SPDSFTFPFVLKACARVLDSELGVKMH 131

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             ++K G E D F++ +LI+ Y+  G+I+NA KVF+    ++  S+   I+GY  V +  
Sbjct: 132 SLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCR 191

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A+ +FR++ +  ++PD+F+ V + SAC    D R G+     + +N G V  N+ + TA
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITEN-GMV-RNVFVATA 249

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +++ Y KCG                                 +ERAR +FD M ++++VS
Sbjct: 250 LVDFYGKCG--------------------------------NMERARSVFDGMLEKNIVS 277

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W++MI GY+  G   +AL+LF KM + G+ PD   MV VL +C  LGAL+ G       I
Sbjct: 278 WSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGD-WASNLI 336

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
               F  N  L TA+IDMYAKCG +D A  VF  + K  + V  +N+ ISGLA  G  + 
Sbjct: 337 NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVV--WNAAISGLAMSGHVKD 394

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMV 491
           ++ +F +ME  G+KPD  TFV +LCAC+H GLVEEG+++F SM   + + P++EHYGCMV
Sbjct: 395 ALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMV 454

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G LDEA+ LI+SMP +AN+++W ALL  CRLHR+ ++ E+  +KL+ LEP H  
Sbjct: 455 DLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSG 514

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
           +YVLLSN+ A +++WEEA ++R +M + G++K PG+S+IE +G +H+FL    SHP +++
Sbjct: 515 NYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEK 574

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L ++   LK+AGYVP T  V+FD++EEEKE  +  HSEKLA+AFGLI++   + I 
Sbjct: 575 IYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKIL 634

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + KNLR+CGDCH A K +S I  REI+VRD  RFH F  G CSC D+W
Sbjct: 635 VVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/717 (39%), Positives = 447/717 (62%), Gaps = 11/717 (1%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILF 65
           E S  ++L+E C SL+Q  Q HG ++ +G  +   S+S+L +  ALS   + L  +R +F
Sbjct: 29  ERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFAS-LEYARKVF 87

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            +I  PN F WNTL+R Y+    P  ++  +  M+S+    PN +TFPF++ + A +SS 
Sbjct: 88  DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  +H   +K  +  D+F+ N+LIH Y   G +++A KVF     +D+VS+N++ING+
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q   P  AL LF+KM+   ++    T V + SAC ++ +   G+Q  + + +N   V  
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR--VNV 265

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N+ L  A+++MY KCG +  A+R+F  M   K    W++M+ GY      E AR++ + M
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREVLNSM 324

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFG 364
            Q+D+V+W A+IS Y Q G  ++AL +F +++    +  +++T+V+ L AC  +GAL+ G
Sbjct: 325 PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +H  YI+      N  +T+A+I MY+KCG ++ +  VF  + K  + V +++++I GL
Sbjct: 385 RWIHS-YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK--RDVFVWSAMIGGL 441

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
           A HG G  ++ +F +M+   +KP+GVTF  V CACSH GLV+E +  F  M  NYGI P+
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +HY C+VD+L R G L++A   I++MP   ++ +W ALL AC++H N  + E+A  +LL
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLL 561

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +LEP +   +VLLSN+ A+  +WE   ++RK M  +G++K PG S IE +G +H FL+  
Sbjct: 562 ELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD 621

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLI 662
            +HP ++++   L ++  KLKS GY P   QV+  ++EEE KE  ++ HSEKLA+ +GLI
Sbjct: 622 NAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLI 681

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++ + + IR+ KNLR+CGDCH   KL+S++Y REI+VRD  RFH F+ G CSC DFW
Sbjct: 682 STEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 296/751 (39%), Positives = 455/751 (60%), Gaps = 75/751 (9%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           R++ EH SL  LL  C+S++   QIH  I+ +GL N   + S+LI F A+S  ++G    
Sbjct: 25  RVLQEHPSL-KLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVS--RSGDISY 81

Query: 62  RI-LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            I LF+ I+ PN+FIWN+++RG S S SP  ALV +  M+  G V PN++TFPF+L SCA
Sbjct: 82  AISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSG-VEPNSYTFPFLLKSCA 140

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS------------------------- 155
           +L+S   G QIH H++K G   D+FI  +LI+ Y+                         
Sbjct: 141 KLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTA 200

Query: 156 ------IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
                 ++GY++ A ++F+    +D+VS+N +I GYAQ+     AL LF  M+ + + P+
Sbjct: 201 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPN 260

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T V++ SAC + N   +G    + +     C  SN+ L  A+I+MY+KCG        
Sbjct: 261 ESTIVSVLSACAQSNALDLGNSMRSWIEDRGLC--SNLKLVNALIDMYSKCG-------- 310

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                                    ++ AR+LFD M +RD++SW  MI GY+ +  + +A
Sbjct: 311 ------------------------DLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEA 346

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           L LF +M + G+ P E+T +++L +C  LGA+D GK +H  YI       +  L+T++ID
Sbjct: 347 LALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHA-YINKNFNSVSTSLSTSLID 405

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           +YAKCG+I  A  VF  +   +K+++ +N++I GLA HG  + +  +F +M   G++P+ 
Sbjct: 406 LYAKCGNIVAARQVFDGM--KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNE 463

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
           +TFV +L AC H GLV+ G+QFF SM+ +Y I P+ +HYGCM+DLL R G  +EA  L+Q
Sbjct: 464 ITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQ 523

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
           +M    +  IW +LL ACR H   ++GE+  ++L +LEPD+   YVLLSN+ A   +W++
Sbjct: 524 NMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDD 583

Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
             ++R  ++D G++K PG + IE +  +H FL   K HPQ+++I  ML+++  +LK  G+
Sbjct: 584 VARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGF 643

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
           V +T +V++D+DEE KE  +S+HSEKLA+AFGLI+++    IRI KNLR+C +CH A KL
Sbjct: 644 VADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKL 703

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S+I+ REI+ RD  RFH FK G+CSC D+W
Sbjct: 704 ISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/715 (41%), Positives = 441/715 (61%), Gaps = 13/715 (1%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGC--KNGLFRSRILF 65
           H +L + L S  SL    Q+H QI+ S L+    S+ L+    +S C   + L  +  +F
Sbjct: 23  HHTLFSALSSATSLTHLKQVHAQILRSKLDR---STSLLVKLVISSCALSSSLDYALSVF 79

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + I  P   + N  +R  SRS+ P++ L++Y  M ++G+ + + F+FP +L + +R+ S 
Sbjct: 80  NLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGL-AVDRFSFPPLLKALSRVKSL 138

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH    K G + D F++  L+  Y+  G I  A  +F+    RD+V+++ +I+GY
Sbjct: 139 VEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGY 198

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q      AL LF +M++  ++PD      + SAC    +   GK  H  + +N   V  
Sbjct: 199 CQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDP 258

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  L++A++ MYA CG M++A  +F  M   K+  A ++M++GY++ G+IE AR +F+QM
Sbjct: 259 H--LQSALVTMYASCGSMDLALNLFEKM-TPKNLVASTAMVTGYSKLGQIENARSVFNQM 315

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            ++DLV W+AMISGY++     +AL LF +M+SLGI PD+VTM++V+ AC  LGALD  K
Sbjct: 316 VKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAK 375

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H  +++   FG  + +  A+I+MYAKCGS++ A  +F K+P+  K V  +  +IS  A
Sbjct: 376 WIHL-FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR--KNVISWTCMISAFA 432

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
            HG   +++  F +ME   ++P+G+TFV VL ACSH GLVEEG++ F SM+N + I P+ 
Sbjct: 433 MHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKH 492

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
            HYGCMVDL  R   L EA  L+++MP   N +IW +L+AACR+H   ++GE A ++LL+
Sbjct: 493 VHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLE 552

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           L+PDH   +V LSN+ A+  RWE+  QVRKLM   GI K  G S  E N  +H FL + +
Sbjct: 553 LDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADR 612

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SH    EI   L ++  KLK  GY PNT  ++ D++EEEK+ VV +HSEKLAL +GL+  
Sbjct: 613 SHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRD 672

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +   IRI KNLR+C DCH   KL S++Y REI+VRD  RFH +K G CSC D+W
Sbjct: 673 GTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/752 (38%), Positives = 448/752 (59%), Gaps = 74/752 (9%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           +LV +H SL  LL +CK+L+   QIH QI+ +GL N H + S+LI F A+S     L  +
Sbjct: 24  KLVHDHPSL-TLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSP-HGDLSYA 81

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             LF  I NPN  IWN ++RG S S+SP  AL  Y  M+S G   PN +TFP +  SC +
Sbjct: 82  LSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSG-TEPNEYTFPSIFKSCTK 140

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS----------IF-------------- 157
           +     G Q+H H++K GLE + F+  +LI+ Y+          +F              
Sbjct: 141 IRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTAL 200

Query: 158 -------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
                  G+++ A ++F+    RD+VS+N +I+GYAQ      A+  F +M+ + + P+ 
Sbjct: 201 ITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNV 260

Query: 211 FTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            T +++ SAC +     ++G    + + ++ G +GSN+ L   +I+MY KCG        
Sbjct: 261 STMLSVLSACAQSGSSLQLGNWVRSWI-EDRG-LGSNIRLVNGLIDMYVKCG-------- 310

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                                    +E A  LF+++  +++VSW  MI GY+ +  + +A
Sbjct: 311 ------------------------DLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEA 346

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN-IFLTTAVI 388
           L LF +M    I P++VT +++L AC  LGALD GK +H    +N+   +N + L T++I
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLI 406

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           DMYAKCG +  A  +F  +  N K+++ +N++ISG A HG  +T++ +F  M   G  PD
Sbjct: 407 DMYAKCGDLAVAKRIFDCM--NTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPD 464

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            +TFV VL AC H GL+  G+++F SM+ +Y + P++ HYGCM+DL  R G  DEA  L+
Sbjct: 465 DITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLV 524

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
           ++M    +  IW +LL ACR+HR  ++ E   + L +LEP++ + YVLLSN+ A   RWE
Sbjct: 525 KNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWE 584

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           +  ++R  ++D+ ++K PG S IE +  +H FL   K HPQ+ EI  ML ++ M+L+ AG
Sbjct: 585 DVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAG 644

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           +VP+T +V++D+DEE KE V+S+HSEKLA+AFGLI+++   TIRI KNLR+CG+CH A K
Sbjct: 645 FVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATK 704

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+S+I+ REI+ RD  RFH FK G+CSC D+W
Sbjct: 705 LISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/702 (41%), Positives = 433/702 (61%), Gaps = 45/702 (6%)

Query: 21  LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           + Q  QIH Q++ +GL     ++S++++F +L      L  +R++FSQI NP  +  N++
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQE-SGSLQYARLVFSQIPNPTSYTCNSI 59

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           +RG +  +  QEAL+ Y  M+ +G++ P+ +TFP +  SC   S    G QIHCH  K G
Sbjct: 60  IRGCTDKNLHQEALLFYQEMMVQGLI-PDRYTFPSLFKSCRNSSE---GKQIHCHSTKLG 115

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF- 198
              D + +N L++ YS  G + +A KVF+    + +VS+ T+I  +AQ  +P  A+ LF 
Sbjct: 116 FASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFD 175

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           R M+   ++P+  T V + +AC    D  + K+ H   Y +    G +++L T ++++Y 
Sbjct: 176 RMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHE--YIDEHGFGRHVVLNTVLMDVYC 233

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG + +A                                R LFD+  +++L SW  MI+
Sbjct: 234 KCGCVQLA--------------------------------RDLFDKAQEKNLFSWNIMIN 261

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G+ +   + +AL LF +M++ GI  D+VTM ++L AC  LGAL+ GK LH  YI+     
Sbjct: 262 GHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHA-YIKKQRID 320

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
            ++ L TA++DMYAKCGSI+TA+ VF+++P+  K V  + ++I GLA  G  E ++  F 
Sbjct: 321 VDVALGTALVDMYAKCGSIETAIQVFHEMPE--KDVMTWTALILGLAMCGQAENALQYFD 378

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARD 497
           EM + G+KPD +TFV VL ACSH G V+EG   F SM + YGI+P +EHYG +VD+L R 
Sbjct: 379 EMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRA 438

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           GR+ EA  LI+SMP   +  +   LL ACR+H N +  E A ++LL+++P H   YVLLS
Sbjct: 439 GRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLS 498

Query: 558 NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
           N+   + +WEEA++ R+LM + G++KPPG S IE +G +H F+    SH Q+ EI  ML+
Sbjct: 499 NIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLE 558

Query: 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           DM  KLK+AGYVP+  +V+FD+ EEEKET +S HSEKLA+AFGL+++     IR+ KNLR
Sbjct: 559 DMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLR 618

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IC DCH A KL+S++Y REI+VRD  RFH FK G CSC  FW
Sbjct: 619 ICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 184/406 (45%), Gaps = 38/406 (9%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSR 62
           L+ +  +  +L +SC++  +  QIH      G  +   + + L++ ++  GC   L  +R
Sbjct: 84  LIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGC---LVSAR 140

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F ++++  +  W T++  +++ D P EA+ L+  M+    V PN  T   VL +CAR 
Sbjct: 141 KVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARA 200

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
                  +IH +I + G    + +   L+  Y   G +  A  +F+ +  ++L S+N +I
Sbjct: 201 RDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMI 260

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           NG+ +      AL LFR+MQ   I+ D  T  ++  ACT L    +GK  HA + K    
Sbjct: 261 NGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQR-- 318

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  ++ L TA+++MYAKCG +  A +VF  M   K    W+++I G    G+ E A Q F
Sbjct: 319 IDVDVALGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALILGLAMCGQAENALQYF 377

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+M  +                               G+ PD +T V VL AC   G +D
Sbjct: 378 DEMHIK-------------------------------GVKPDAITFVGVLAACSHAGFVD 406

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            G        +       I     ++D+  + G I  A  +   +P
Sbjct: 407 EGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMP 452


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/713 (38%), Positives = 446/713 (62%), Gaps = 12/713 (1%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++L++ C SL+Q  Q H  ++ +G+ +   S+S+L +  ALS   + L  +R +F +I  
Sbjct: 35  ISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFAS-LEYARKVFDEIPQ 93

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           PN F WNTL+R Y+    P  ++  +  M+S +    PN +TFPF++ + A +SS   G 
Sbjct: 94  PNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQ 153

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +H   IK  +  D+F+ N+LIH Y   G +++A KVF     +D+VS+N++ING+ Q  
Sbjct: 154 SLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 213

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
            P  AL LF+KM+   ++    T V + SAC ++ D   G++  + + +N   V  N+ L
Sbjct: 214 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENR--VNVNLTL 271

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+++MY KCG +  A+R+F  M   K    W++M+ GY      E AR++ + M ++D
Sbjct: 272 ANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKD 330

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +V+W A+IS Y Q G  ++AL +F +++    I  +++T+V+ L AC  +GAL+ G+ +H
Sbjct: 331 IVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIH 390

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             YI+      N ++T+A+I MY+KCG ++ A  VF  + K  + V +++++I GLA HG
Sbjct: 391 S-YIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEK--RDVFVWSAMIGGLAMHG 447

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
            G  ++ +F +M+   +KP+GVTF  V CACSH GLV+E +  F  M  +YGI P+ +HY
Sbjct: 448 CGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHY 507

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C+VD+L R G L++A   I++MP   ++ +W ALL AC++H N  + E+A  +LL+LEP
Sbjct: 508 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEP 567

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
            +   +VLLSN+ A++ +W+   ++RK M  +G++K PG S IE +G +H FL+   +HP
Sbjct: 568 RNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 627

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSRS 666
            ++++   L ++  KLKS GY P    V+  ++EEE KE  ++ HSEKLA+ +GLI++ +
Sbjct: 628 MSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 687

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + IR+ KNLR+CGDCH   KL+S++Y REI+VRD  RFH F+ G CSC DFW
Sbjct: 688 PKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/720 (39%), Positives = 443/720 (61%), Gaps = 15/720 (2%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVH-SGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           +E +++L  ++ C +  Q  QIH  ++  S      ++S+L++ +A+S C + L  ++ +
Sbjct: 70  VESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSC-SCLIYAKNV 128

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F+QI  PN++ WNTL+RGY+ S  P ++ +++  ML      PN FTFPF+  + +RL  
Sbjct: 129 FNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKV 188

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G  +H  +IK  L  DLFI N+LI+FY   G  + AH+VF     +D+VS+N +IN 
Sbjct: 189 LHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINA 248

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +A    P  AL LF++M+   ++P+  T V++ SAC +  D   G+   + +  N     
Sbjct: 249 FALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENN--GFT 306

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            +++L  A+++MY KCG +N A+ +F+ M   K   +W++M+ G+ + G  + A  +FD 
Sbjct: 307 EHLILNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAKLGNYDEAHCIFDA 365

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDF 363
           M  +   +W A+IS Y Q G    AL LF +M+ S    PDEVT++  L A   LGA+DF
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G  +H  YI+      N  L T+++DMYAKCG+++ A+ VF+ + +  K V +++++I  
Sbjct: 426 GHWIHV-YIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER--KDVYVWSAMIGA 482

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
           LA +G G+ ++ +F  M    +KP+ VTF  +LCAC+H GLV EG+Q FE M   YGI P
Sbjct: 483 LAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVP 542

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           Q++HY C+VD+  R G L++A   I+ MP    + +W ALL AC  H N ++ E+A Q L
Sbjct: 543 QIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNL 602

Query: 543 LDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L+LEP +HGA +VLLSN+ A+   WE+   +RKLM DS ++K P  S I+ NG +H FL 
Sbjct: 603 LELEPCNHGA-FVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLV 661

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK--ETVVSYHSEKLALAF 659
              SHP +++I   L +++ K K  GY P+   ++  + EE+   E  ++ HSEKLA+AF
Sbjct: 662 GDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLL-QLSEEDNLMEQSLNVHSEKLAIAF 720

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI++ S + IRI KN+RICGDCH   KL+S++Y R+I++RD  RFH F+ G CSC+D+W
Sbjct: 721 GLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 314/770 (40%), Positives = 452/770 (58%), Gaps = 74/770 (9%)

Query: 15  LESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           L+ C+++KQ  QI  Q++ SG      ++S+L+ F       N + +S  +FS I+NPN 
Sbjct: 33  LQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFIN-INQSYQIFSHIENPNG 91

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-RLSSFKSGCQIH 132
           FI NT+M+GY + +SP +A+ +Y  ML    V+ +N+T+P +  SC+ RL+ F   C I 
Sbjct: 92  FICNTMMKGYMQRNSPCKAIWVYKFMLESN-VAADNYTYPILFQSCSIRLAEFDGKC-IQ 149

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            H++K G + D++I+N LI+ Y++ G +++A KVF+GS   D+VS+N+++ GY  V    
Sbjct: 150 DHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVE 209

Query: 193 PALWLFRKM---------------------QDSC------IQPDAFTFVAMFS------- 218
            A  ++ +M                     +++C       Q D  ++ A+ S       
Sbjct: 210 EAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEM 269

Query: 219 ----------------------------ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
                                       AC+ L     GK  H +V K +G + + + L+
Sbjct: 270 YEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVK-VG-IETYVNLQ 327

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+MY+ C  +  A+++FS         +W+SMISGY + G+IE+AR LFD M  +D 
Sbjct: 328 NALIHMYSSCEEVVTAQKLFSE-SCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDN 386

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW+AMISGY+Q   F++ L LF +M+  G  PDE  +V+V+ AC  L ALD GK +H  
Sbjct: 387 VSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIH-A 445

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           YI       NI L T +I+MY K G ++ AL VF  + +  K VS +N++I GLA +GL 
Sbjct: 446 YIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEE--KGVSTWNALILGLAMNGLV 503

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
           + S+  F EM+  G+ P+ +TFV VL AC H GLV+EG + F SM+  + I P ++HYGC
Sbjct: 504 DKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGC 563

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R G L EA  LI+SMP   +   W ALL AC+ + + + GE  G+KL++L PDH
Sbjct: 564 MVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDH 623

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
               VLLSN+ A    W +  +VR +M   G+ K PG S IE +G +H FLA  K+HPQ 
Sbjct: 624 DGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQN 683

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           + IE ML +M  KLK  GY P+T +V  D+DEEEKET +  HSEKLA+AFGLI       
Sbjct: 684 EHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTP 743

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRI KNLRIC DCH A KL+S+ + REI+VRD  RFH FK+G+CSCMD+W
Sbjct: 744 IRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 226/479 (47%), Gaps = 73/479 (15%)

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN--NAHKVF 167
            T P +     +  + K   QI   +I  G   D F  + L+ F +   +IN   ++++F
Sbjct: 24  LTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIF 83

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
                 +    NT++ GY Q   PC A+W+++ M +S +  D +T+  +F +C+      
Sbjct: 84  SHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEF 143

Query: 228 IGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
            GK     V K    VG  S++ ++  +INMYA CG ++ A +VF    +     +W+SM
Sbjct: 144 DGKCIQDHVLK----VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVL-DMVSWNSM 198

Query: 286 ISGYT-------------------------------REGKIERARQLFDQMDQRDLVSWT 314
           ++GY                                ++G +E A +LF++M Q+DLVSW+
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWS 258

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH------ 368
           A+IS Y Q   + +AL LF +M + GI  DEV +++VL AC  L  +  GK +H      
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 369 --QQYI-------------ENVVFGRNIFLTTAVIDM---------YAKCGSIDTALSVF 404
             + Y+             E VV  + +F  +  +D          Y KCG I+ A ++F
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +P   K    ++++ISG AQ      ++ +F+EM++ G KPD    V+V+ AC+H   
Sbjct: 379 DSMPD--KDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAA 436

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           +++GK     +   G+K  +     ++++  + G +++A  + + +     S  W AL+
Sbjct: 437 LDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVST-WNALI 494


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 279/714 (39%), Positives = 444/714 (62%), Gaps = 14/714 (1%)

Query: 13  ALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           AL + C S KQ  QIH Q++ +  L+   ++S+L +  A S   + L  +R +F QI  P
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSF-SALDYARKVFDQIPQP 202

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N++ WN L+R  + S  P ++++++  ML      PN FTFP ++ + A    F  G  +
Sbjct: 203 NLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAV 262

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGYAQVK 189
           H   IK     D+F+ N+LIHFY+  G+++ A+ VFE      +D+VS+N+++ G+ Q  
Sbjct: 263 HGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGG 322

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
            P  AL LF +M++  + P+A T V++ SAC +  +  +G++    + +N   +  N+  
Sbjct: 323 YPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVC- 381

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A I+M+ KCG + +A  +F  M   +   +W+++I GY +  +   AR +FD M ++D
Sbjct: 382 -NATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKD 439

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKME--SLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           + +W  +ISGY Q G   +AL +F +++    G  PD+VT+++ L AC  LGA+D G+ +
Sbjct: 440 IPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWI 499

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  YI+      N  L T++IDMY+K G ++ A+ VF+ I    K V +++++I+GLA H
Sbjct: 500 HG-YIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGN--KDVFVWSAMIAGLAMH 556

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G GE +I +F +M+   +KP+ VTF  +LCACSH GLV+EGK+ F+ M   YG+ P+ +H
Sbjct: 557 GRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH 616

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMVD+L R G L+EA   I+ MP   ++ +W ALL AC +H N ++ E A  +LL++E
Sbjct: 617 YSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIE 676

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P +   YVLLSN+ A+T  WE   ++R+ M DSG++K  G S IE +GT+H F+    +H
Sbjct: 677 PGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAH 736

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSR 665
           P +++I   L ++  +L+S GYV NT+ ++  V+EEE KE  +  HSEK+A+AFGLI + 
Sbjct: 737 PLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRAD 796

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S++ IRI KNLR+C DCH   K++S++Y R+I++RD  RFH F  G+CSC D+W
Sbjct: 797 SQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/743 (39%), Positives = 444/743 (59%), Gaps = 73/743 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL +CK+L+    IH Q++ +GL N + + S+L+ F  LS   +GL  +  +F  I  
Sbjct: 6   LSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQE 65

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+ IWNT+ RG++ S  P  A+ LY  M+S G++ PN++TFPF+L SCA+L   K G Q
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLL-PNSYTFPFLLKSCAKLKVSKEGQQ 124

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY------------ 178
           IH H++K G E DL++  +LI  Y   G   +AHKVF+GS  RD+VSY            
Sbjct: 125 IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGY 184

Query: 179 -------------------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                              N +I+GYA       AL LF++M  + ++PD  T V + SA
Sbjct: 185 IESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSA 244

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +    ++G+Q H+ +  +   +GSN+ +  A+I++Y+KCG                  
Sbjct: 245 CAQSGSIQLGRQVHSWIDDH--GLGSNLKIVNALIDLYSKCG------------------ 284

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E A  LF  +  +D++SW  MI GY+ +  + +AL LF +M   
Sbjct: 285 --------------EVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRS 330

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSI 397
           G +P++VTM+++L AC  LGA+DFG+ +H  YI+  + G      L T++IDMYAKCG I
Sbjct: 331 GENPNDVTMLSILPACAQLGAIDFGRWIHV-YIDKRIKGVTNASSLRTSLIDMYAKCGDI 389

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF  +  + +T+S  N++I G A HG    +  +F  M   G++PD +TFV +L 
Sbjct: 390 EAAHQVFNSM--HHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 447

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH G+++ G++ F SM  NY I P++EHYGCM+DLL   G   EA  +I +M  + + 
Sbjct: 448 ACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDG 507

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VIW +LL AC++H N ++GE   QKL+ +EP++   YVLLSN+ A   RW E   +R L+
Sbjct: 508 VIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALL 567

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           +D G++K PG S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+
Sbjct: 568 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            +++EE K+  + +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+RE
Sbjct: 628 QEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 687

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+ RD  RFH F+ G CSC D+W
Sbjct: 688 IIARDRTRFHHFRDGVCSCNDYW 710


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/711 (41%), Positives = 428/711 (60%), Gaps = 15/711 (2%)

Query: 14  LLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL +C    +L + +Q+HG ++  GL   I  S+ LI F+A  G    +   R LF  + 
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECG---KVDLGRKLFDGML 192

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  W +L+ GYS  D  +EA+ L+  M   G V PN  T   V+++CA+L   + G 
Sbjct: 193 ERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAG-VEPNPVTMVCVISACAKLKDLELGK 251

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++  +I + G+E    + NAL+  Y   G I  A ++F+    ++LV YNT+++ Y   +
Sbjct: 252 KVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHE 311

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
                L +  +M     +PD  T ++  +AC +L D  +GK  HA V +N G  G + + 
Sbjct: 312 WASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN-GLEGWDNI- 369

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+I+MY KCG    A +VF  M  +K+   W+S+I+G  R+G +E A ++FD+M +RD
Sbjct: 370 SNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           LVSW  MI    QV  F +A+ELF +M++ GI  D VTMV +  AC  LGALD  K +  
Sbjct: 429 LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWV-C 487

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YIE      ++ L TA++DM+++CG   +A+ VF ++ K  + VS + + I  +A  G 
Sbjct: 488 TYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEK--RDVSAWTAAIGVMAMEGN 545

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
            E +I +F EM    +KPD V FV +L ACSHGG V++G+Q F SM   +GI+P + HYG
Sbjct: 546 TEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYG 605

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R G L+EA  LIQSMP + N V+W +LLAACR H+N ++   A +KL  L P+
Sbjct: 606 CMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPE 665

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
               +VLLSN+ A   +W +  +VR  M + G+QK PG S IE  G +H F +  +SH +
Sbjct: 666 RVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAE 725

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
              I LML+++  +L  AGYVP+T  V+ DVDE+EKE ++S HSEKLA+A+GLI +    
Sbjct: 726 NTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGI 785

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IR+ KNLR+C DCH   KL+S++Y REI VRD  R+H FK+G CSC D+W
Sbjct: 786 PIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 254/472 (53%), Gaps = 47/472 (9%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALS---GCKNGLFRSRILFSQIDN 70
           LL +CK+LK+  Q+H  ++  GL  H  +S L    A S   G    L  +R  F   D 
Sbjct: 31  LLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDG 90

Query: 71  --PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++F++N L+RGY+ +    +A++LY  ML  GIV P+ +TFPF+L++C+++ +   G
Sbjct: 91  NMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIV-PDKYTFPFLLSACSKILALSEG 149

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H  ++K GLE D+F+ N+LIHFY+  G ++   K+F+G L R++VS+ +LINGY+  
Sbjct: 150 VQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGR 209

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ LF +M ++ ++P+  T V + SAC +L D  +GK+  + +   LG   S ++
Sbjct: 210 DLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI-SELGMELSTIM 268

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  A+++MY KC                                G I  ARQ+FD+   +
Sbjct: 269 V-NALVDMYMKC--------------------------------GDICAARQIFDECANK 295

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +LV +  ++S Y      S  L +  +M   G  PD+VTM++ + AC  LG L  GK  H
Sbjct: 296 NLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSH 355

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              + N + G +  ++ A+IDMY KCG  + A  VF  +P   KTV  +NS+I+GL + G
Sbjct: 356 AYVLRNGLEGWD-NISNAIIDMYMKCGKREAACKVFEHMPN--KTVVTWNSLIAGLVRDG 412

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
             E +  +F EM    L+ D V++ T++ A     + EE  + F  M N GI
Sbjct: 413 DMELAWRIFDEM----LERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGI 460


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 312/779 (40%), Positives = 441/779 (56%), Gaps = 75/779 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S+L +LL+SCK  +   Q+  Q + +GL     ++S+LI+F + S        S  +F+ 
Sbjct: 4   STLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNH 63

Query: 68  IDNPNIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-RLSSF 125
           + NPN F WNT+MR +    +SP +AL+ Y   L+     P+++T+P +L  CA R+S F
Sbjct: 64  LRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASH-AKPDSYTYPILLQCCAARVSEF 122

Query: 126 KSGCQIHCHIIKFGLE-------------------------------FDLFIRNALIHFY 154
           + G Q+H H +  G +                                DL   N L+  Y
Sbjct: 123 E-GRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGY 181

Query: 155 SIFGYINNAHKVFEG---------------------------------SLARDLVSYNTL 181
              G +  A +VFEG                                    RD+VS++ +
Sbjct: 182 VQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAM 241

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           ++ Y Q +    AL LF +M+ S +  D    V+  SAC+ + +  +G+  H +  K +G
Sbjct: 242 VSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVK-VG 300

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            V   + LK A+I++Y+ CG +  A R+F   G      +W+SMISGY R G I+ A  L
Sbjct: 301 -VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEML 359

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F  M ++D+VSW+AMISGY+Q   FS+AL LF +M+  G+ PDE  +V+ + AC  L  L
Sbjct: 360 FYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATL 419

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D GK +H  YI       N+ L+T +IDMY KCG ++ AL VFY + +  K VS +N++I
Sbjct: 420 DLGKWIHA-YISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEE--KGVSTWNAVI 476

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
            GLA +G  E S+ +F +M+  G  P+ +TF+ VL AC H GLV +G+ +F SM++ + I
Sbjct: 477 LGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKI 536

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +  ++HYGCMVDLL R G L EA  LI SMP   +   W ALL ACR HR+ ++GE  G+
Sbjct: 537 EANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGR 596

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           KL+ L+PDH   +VLLSN+ A    W    ++R +M   G+ K PG S IE NGT+H FL
Sbjct: 597 KLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFL 656

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A  K+HPQ  +IE ML  +  KLK  GYVP T +V  D+DEEEKET +  HSEKLA+AFG
Sbjct: 657 AGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFG 716

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI       IR+TKNLRIC DCH   KL+S+ + R+I+VRD  RFH FK G CSCMDFW
Sbjct: 717 LITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 295/711 (41%), Positives = 425/711 (59%), Gaps = 15/711 (2%)

Query: 14  LLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L +C    +L +  Q+HG IV  G    +   + LI F+   G  + + R   +F ++ 
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRR---VFDKMS 201

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  W +L+ GY++    +EA+ L+  M+  GI  PN+ T   V+++CA+L   + G 
Sbjct: 202 ERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGI-RPNSVTMVGVISACAKLQDLQLGE 260

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+   I +  LE +  + NAL+  Y   G I+ A K+F+  + ++LV YNT+++ Y +  
Sbjct: 261 QVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQG 320

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
                L +  +M     +PD  T ++  SAC+EL+D   GK  H  V +N G  G + + 
Sbjct: 321 LAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRN-GLEGWDNVC 379

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+INMY KCG   MA RVF  M ++K+  +W+S+I+G+ R G +E A ++F  M   D
Sbjct: 380 -NAIINMYMKCGKQEMACRVFDRM-LNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSD 437

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           LVSW  MI    Q   F +A+ELF  M+S GI  D+VTMV V  AC  LGALD  K +H 
Sbjct: 438 LVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHG 497

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YI+      ++ L TA++DM+A+CG   +A+ VF K+ K  + VS + + I  +A  G 
Sbjct: 498 -YIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVK--RDVSAWTAAIGAMAMEGN 554

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
           G  +I +F EM   G+KPDGV FV +L A SHGGLVE+G   F SM + YGI PQ  HYG
Sbjct: 555 GTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYG 614

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R G L EA  LI SM  + N VIW +LLAACR+H+N  I   A +++ +L+P+
Sbjct: 615 CMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPE 674

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
               +VLLSN+ A   RW++  +VR  + + G  K PG S IE NG +  F    +SHP+
Sbjct: 675 RTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPE 734

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
              IE MLK++  +L+  GYVP+   V+ DV+E+EKE ++S HSEKLA+AF LI++    
Sbjct: 735 MTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGM 794

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IR+ KNLRIC DCH   KL+S+ Y REI+VRD  RFH F++G CSC D+W
Sbjct: 795 PIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 176/624 (28%), Positives = 291/624 (46%), Gaps = 93/624 (14%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGL- 58
           +K L    SS     + CK++ +  Q+H QI  +GLNHH +S + LIS     G    L 
Sbjct: 26  LKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLE 85

Query: 59  FRSRILFSQIDNPNI----FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
           +  + L   I++  I    +++++L+RG+S      +A+V++  ++  G V P+NFTFPF
Sbjct: 86  YAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAV-PDNFTFPF 144

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           VL++C + ++   G Q+H  I+K G E D+F+ N+LIHFY   G I+   +VF+    R+
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERN 204

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+ +LI GYA+      A+ LF +M +  I+P++ T V + SAC +L D ++G+Q   
Sbjct: 205 VVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQV-- 262

Query: 235 VVYKNLGCVGS-----NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
                  C+G      N L+  A+++MY KCG ++ A ++F                   
Sbjct: 263 -----CTCIGELELEVNALMVNALVDMYMKCGAIDKARKIF------------------- 298

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                        D+   ++LV +  ++S Y + G   + L + G+M   G  PD +TM+
Sbjct: 299 -------------DECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITML 345

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF----- 404
           + + AC  L  +  GK  H   + N + G +  +  A+I+MY KCG  + A  VF     
Sbjct: 346 SAVSACSELDDVSCGKWCHGYVLRNGLEGWD-NVCNAIINMYMKCGKQEMACRVFDRMLN 404

Query: 405 ----------------------YKIPKNLKTVSL--FNSIISGLAQHGLGETSIAVFREM 440
                                 +KI   +    L  +N++I  L Q  + + +I +FR M
Sbjct: 405 KTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVM 464

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
           +  G+  D VT V V  AC + G ++  K     +    I   M     +VD+ AR G  
Sbjct: 465 QSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDP 524

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD------LEPDHGAHYV 554
             A  +   M     S  W A + A  +  N   G I   +L D      ++PD G  +V
Sbjct: 525 QSAMQVFNKMVKRDVSA-WTAAIGAMAMEGNGT-GAI---ELFDEMLQQGIKPD-GVVFV 578

Query: 555 LLSNMLAETYRWEEARQVRKLMDD 578
            L   L+     E+   + + M D
Sbjct: 579 ALLTALSHGGLVEQGWHIFRSMKD 602


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 297/724 (41%), Positives = 439/724 (60%), Gaps = 12/724 (1%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL---NHHISSSQLISFFALSGCKNG 57
           M   ++   S   LL SCK+L+   QIH QI+ S +   N  +    L      S   + 
Sbjct: 5   MSTRLIPSPSEKGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSA 64

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  +  LFS I NP     N L+R +SR  +P+  L LY  +   G    + F+FP +L 
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGF-PLDRFSFPPLLK 123

Query: 118 SCARLSSFKSGCQIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           + ++LS+   G +IH    KFG    D FI++ALI  Y+  G I +A  +F+    RD+V
Sbjct: 124 AVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVV 183

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N +I+GY+Q       L L+ +M+ S  +PDA     + SAC    +   GK  H  +
Sbjct: 184 TWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFI 243

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
             N   VGS+  ++T+++NMYA CG M++A  V+  +  SK     ++M+SGY + G ++
Sbjct: 244 KDNGFRVGSH--IQTSLVNMYANCGAMHLAREVYDQLP-SKHMVVSTAMLSGYAKLGMVQ 300

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            AR +FD+M ++DLV W+AMISGY++     +AL+LF +M+   I PD++TM++V+ AC 
Sbjct: 301 DARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACA 360

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            +GAL   K +H  Y +   FGR + +  A+IDMYAKCG++  A  VF  +P+  K V  
Sbjct: 361 NVGALVQAKWIHT-YADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPR--KNVIS 417

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           ++S+I+  A HG  +++IA+F  M+   ++P+GVTF+ VL ACSH GLVEEG++FF SM+
Sbjct: 418 WSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMI 477

Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           N + I PQ EHYGCMVDL  R   L +A  LI++MP+  N +IW +L++AC+ H   ++G
Sbjct: 478 NEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELG 537

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           E A  +LL+LEPDH    V+LSN+ A+  RW++   VRKLM   G+ K    S IE N  
Sbjct: 538 EFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNE 597

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +H F+ + + H Q+ EI   L  +  +LK  GY P+T  ++ D++EEEK+ VV +HSEKL
Sbjct: 598 VHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKL 657

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           AL +GLI  R +  IRI KNLRIC DCH   KL+S+++R EI++RD  RFH F  G CSC
Sbjct: 658 ALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSC 717

Query: 716 MDFW 719
            D+W
Sbjct: 718 RDYW 721


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/721 (40%), Positives = 429/721 (59%), Gaps = 49/721 (6%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRSR 62
           L+  +LL  L + KSL QALQ+H  +   G    N ++++ +L + +A+ G    +  ++
Sbjct: 23  LQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLAT-KLAACYAVCG---HMPYAQ 78

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F QI   N F+WN+++RGY+ ++SP  AL LY  ML  G   P+NFT+PFVL +C  L
Sbjct: 79  HIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFG-QKPDNFTYPFVLKACGDL 137

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              + G ++H  ++  GLE D+++ N+++  Y  FG +  A  VF+  L RDL S+NT++
Sbjct: 138 LLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMM 197

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +G+ +  E   A  +F  M+      D  T +A+ SAC ++ D ++GK+ H  V +N G 
Sbjct: 198 SGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRN-GE 256

Query: 243 VGS--NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            G   N  L  ++I+MY  C                                  +  AR+
Sbjct: 257 SGRVCNGFLMNSIIDMYCNCE--------------------------------SVSCARK 284

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF+ +  +D+VSW ++ISGY + G   QALELFG+M  +G  PDEVT+++VL AC  + A
Sbjct: 285 LFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISA 344

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNS 419
           L  G  + Q Y+    +  N+ + TA+I MYA CGS+  A  VF ++P KNL   ++   
Sbjct: 345 LRLGATV-QSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTV--- 400

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NY 478
           +++G   HG G  +I++F EM   G+ PD   F  VL ACSH GLV+EGK+ F  M  +Y
Sbjct: 401 MVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDY 460

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            ++P+  HY C+VDLL R G LDEAY +I++M    N  +W ALL+ACRLHRN K+  I+
Sbjct: 461 SVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVIS 520

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            QKL +L PD  + YV LSN+ A   RWE+   VR L+    ++KPP +S++E N  +H+
Sbjct: 521 AQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQ 580

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F     SH Q+ +I   LKD+  +LK AGY P+T  V++DV+EE KE ++  HSE+LALA
Sbjct: 581 FFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALA 640

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           F LIN+    TIRITKNLR+CGDCH   K++S++  REI++RD  RFH F+ G CSC  +
Sbjct: 641 FALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGY 700

Query: 719 W 719
           W
Sbjct: 701 W 701


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 282/716 (39%), Positives = 429/716 (59%), Gaps = 14/716 (1%)

Query: 8   HSSLLALLESCKSLK---QALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRI 63
           H +   +L  C  +    + +Q+HG +V  GL   +   + LI F+A  G    +     
Sbjct: 131 HYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECG---HMDHGHK 187

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   N+  W +L+ GY+R D P+EA+ L+  M+  GI  P++ T   V+++CA+L 
Sbjct: 188 VFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGI-RPSSVTMVCVISACAKLR 246

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G ++  +I + GL+ +  + NAL+  Y   G I+ A ++F+  + R+LV YNT+++
Sbjct: 247 DLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILS 306

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YA+      AL +  +M     +PD  T ++  SA  +L D   GK  H  V +N G  
Sbjct: 307 NYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRN-GLE 365

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G + +    +I+MY KCG   MA RVF  M  +K+  +W+S+ +G+ R G +E A ++F+
Sbjct: 366 GWDSI-GNVIIDMYMKCGKPEMACRVFDLMS-NKTVVSWNSLTAGFIRNGDVESAWEVFN 423

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           Q+ +R+ V W  MISG  Q   F  A+ELF +M+  GI  D VTM+ +  AC  LGA + 
Sbjct: 424 QIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPEL 483

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            K +H  YIE      ++ L TA++DM+A+CG   +A+ VF K+ +  + VS + + I  
Sbjct: 484 AKWVHT-YIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTE--RDVSAWTAAIGT 540

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           +A  G GE +  +F +M + G+KPD V FV VL ACSHGG VE+G   F  M ++GI PQ
Sbjct: 541 MAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQ 600

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EHYGCMVDLL R G L EA+ LI+SMP + N V+W +LLAACR+H+N ++   A +++ 
Sbjct: 601 IEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERIN 660

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L P     +VLLSN+ A   +W +  +VR  + + G++K PG S ++ NG +H F +  
Sbjct: 661 ELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGD 720

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +SHP+   I LML++M  +   AG++P+   V+ DVDE+EKE ++S HSEKLA+AFGLI 
Sbjct: 721 ESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIA 780

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +     IR+ KNLR+C DCH   K+ S IY REI+VRD  RFH F++G CSC D+W
Sbjct: 781 TGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 307/626 (49%), Gaps = 84/626 (13%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQI----- 68
           L  CK+L Q  Q+H QI  +GL+   S+ ++L++  A       L  +R  F        
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +  +F+ N+L+RGYS +   +EA++LY  ML  G V+PN++TFPFVL+ C ++++F  G
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H  ++K GLE D+FI+N LIHFY+  G++++ HKVFEG   R++VS+ +LI GYA+ 
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  A+ LF +M ++ I+P + T V + SAC +L D  +G++  A +   LG +  N +
Sbjct: 211 DRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI-GELG-LKLNKV 268

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  A+++MY KCG ++ A+R+F    + ++   +++++S Y R+G    A  + D+M Q+
Sbjct: 269 MVNALVDMYMKCGAIDAAKRLFDEC-VDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          G  PD VTM++ + A   L  L +GK  H
Sbjct: 328 -------------------------------GPRPDRVTMLSAISASAQLVDLFYGKVCH 356

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKC-------------------------------GSI 397
              I N + G +  +   +IDMY KC                               G +
Sbjct: 357 GYVIRNGLEGWD-SIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDV 415

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           ++A  VF +IP+  +    +N++ISGL Q  L E +I +FREM+  G+K D VT + +  
Sbjct: 416 ESAWEVFNQIPE--RNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIAS 473

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           AC + G  E  K     +   GI   M     +VD+ AR G    A  +   M  + +  
Sbjct: 474 ACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVS 532

Query: 518 IWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
            W A +    +  N +   G      +  ++PD    +V +    +   + E+   +  L
Sbjct: 533 AWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV-VLFVQVLTACSHGGQVEQGLHIFSL 591

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLA 601
           M+D GI        IEH G +   L 
Sbjct: 592 MEDHGIS-----PQIEHYGCMVDLLG 612


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/714 (38%), Positives = 432/714 (60%), Gaps = 46/714 (6%)

Query: 11  LLALLESCKS---LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFS 66
            L+++++C S   L+   ++H  I+  G     I  + L S +   G    L  +R +F 
Sbjct: 123 FLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCG---SLENARQVFD 179

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   ++  WN ++ GYS++  P EAL L++ M   GI  PN+ T   V+  CA L + +
Sbjct: 180 RMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI-KPNSSTLVSVMPVCAHLLALE 238

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G QIHC+ I+ G+E D+ + N L++ Y+  G +N AHK+FE    RD+ S+N +I GY+
Sbjct: 239 QGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
              +   AL  F +MQ   I+P++ T V++  AC  L     G+Q H   Y       SN
Sbjct: 299 LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG--YAIRSGFESN 356

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            ++  A++NMYAKCG +N                                 A +LF++M 
Sbjct: 357 DVVGNALVNMYAKCGNVN--------------------------------SAYKLFERMP 384

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++++V+W A+ISGYSQ G   +AL LF +M++ GI PD   +V+VL AC    AL+ GK+
Sbjct: 385 KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ 444

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   I +  F  N+ + T ++D+YAKCG+++TA  +F ++P+  + V  + ++I     
Sbjct: 445 IHGYTIRSG-FESNVVVGTGLVDIYAKCGNVNTAQKLFERMPE--QDVVSWTTMILAYGI 501

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           HG GE ++A+F +M+  G K D + F  +L ACSH GLV++G Q+F+ M  +YG+ P++E
Sbjct: 502 HGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLE 561

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C+VDLL R G LDEA G+I++M  + ++ +W ALL ACR+H N ++GE A + L +L
Sbjct: 562 HYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFEL 621

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +PD+  +YVLLSN+ AE  RWE+  ++RK+M + G++K PG S +  +  +  FL   ++
Sbjct: 622 DPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRT 681

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQ+++I  ML+ +  +++ AGYVPNT   + DV+EE KE ++S HSEKLA++FG+IN+ 
Sbjct: 682 HPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTS 741

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IRI KNLR+C DCH A K +S+I  REI+VRDA RFH  K G CSC D+W
Sbjct: 742 PGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/742 (37%), Positives = 440/742 (59%), Gaps = 71/742 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL +CK+L+    IH Q++ +GL N + + S+L+    +S   +GL  +  +F  I  
Sbjct: 37  LSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQE 96

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+ IWNT+ RG++ S  P  AL LY  M+S G++ PN++TFPF+L SCA+  +FK G Q
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKSKAFKEGQQ 155

Query: 131 IHCHIIKFGLEFDLFIRNALIHFY----------SIF---------------------GY 159
           IH H++K G + DLF+  +LI  Y           +F                     GY
Sbjct: 156 IHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGY 215

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I +A K+F+    +D+VS+N +I+GYA+      AL LF++M  + I+PD  T V + SA
Sbjct: 216 IESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSA 275

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +     +G+Q H+ +  +    GSN+ +  +++++Y+KCG                  
Sbjct: 276 CAQSGSIELGRQVHSWIDDH--GFGSNLKIVNSLMDLYSKCG------------------ 315

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E A  LF+ +  +D++SW  +I GY+ +  + +AL LF +M   
Sbjct: 316 --------------ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF-LTTAVIDMYAKCGSID 398
           G  P++VTM+++L AC  LGA+D G+ +H    + +    N   L T++IDMYAKCG I+
Sbjct: 362 GERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIE 421

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF  I    K++S +N++I G A HG  + +  +F  M  +G++PD +TFV +L A
Sbjct: 422 AAHQVFNSILH--KSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSA 479

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CS  G+++ G+  F +M  +Y I P++EHYGCM+DLL   G   EA  +I +M  + + V
Sbjct: 480 CSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGV 539

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           IW +LL AC++  N ++GE   Q L+ +EP++   YVLLSN+ A   RW E  ++R L++
Sbjct: 540 IWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLN 599

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D G++K PG S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+ 
Sbjct: 600 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ 659

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+REI
Sbjct: 660 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 719

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           + RD  RFH F+ G CSC D+W
Sbjct: 720 IARDRTRFHHFRDGVCSCNDYW 741


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/743 (38%), Positives = 440/743 (59%), Gaps = 73/743 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL +CK+L+    IH Q++  GL N + + S+LI F  LS    GL  +  +F  I  
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+ IWNT+ RG++ S  P  AL LY  M+S G++ PN++TFPFVL SCA+  +FK G Q
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSCAKSKAFKEGQQ 155

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY------------ 178
           IH H++K G + DL++  +LI  Y   G + +AHKVF+ S  RD+VSY            
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215

Query: 179 -------------------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                              N +I+GYA+      AL LF+ M  + ++PD  T V + SA
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +     +G+Q H  ++ +    GSN+ +  A+I++Y+KCG                  
Sbjct: 276 CAQSGSIELGRQVH--LWIDDHGFGSNLKIVNALIDLYSKCG------------------ 315

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E A  LF+++  +D++SW  +I GY+ +  + +AL LF +M   
Sbjct: 316 --------------ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSI 397
           G  P++VTM+++L AC  LGA+D G+ +H  YI+  + G      L T++IDMYAKCG I
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHV-YIDKRLKGVTNASSLRTSLIDMYAKCGDI 420

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF  I    K++S +N++I G A HG  + S  +F  M  +G++PD +TFV +L 
Sbjct: 421 EAAHQVFNSILH--KSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH G+++ G+  F +M  +Y + P++EHYGCM+DLL   G   EA  +I  M  + + 
Sbjct: 479 ACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG 538

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VIW +LL AC++H N ++GE   + L+ +EP++   YVLLSN+ A   RW E  + R L+
Sbjct: 539 VIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALL 598

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           +D G++K PG S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+
Sbjct: 599 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVL 658

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+RE
Sbjct: 659 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 718

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+ RD  RFH F+ G CSC D+W
Sbjct: 719 IIARDRTRFHHFRDGVCSCNDYW 741


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 282/727 (38%), Positives = 439/727 (60%), Gaps = 34/727 (4%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSG-----CKNGLFR 60
           + L++L++C +   L++A +IH  +  SG+   ++ ++ LI+ ++  G     C+     
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACE----- 235

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
              +F ++   N+  W  +++  ++     EA  LY  ML  GI SPN  TF  +LNSC 
Sbjct: 236 ---IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI-SPNAVTFVSLLNSCN 291

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              +   G +IH HI + GLE D+ + NALI  Y     I +A + F+    RD++S++ 
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351

Query: 181 LINGYAQV----KEPCPALW-LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +I GYAQ     KE    ++ L  +M+   + P+  TF+++  AC+       G+Q HA 
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAE 411

Query: 236 VYKNLGCVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           + K    VG  S+  L+TA+ NMYAKCG +  AE+VFS M  +K+  AW+S+++ Y + G
Sbjct: 412 ISK----VGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKM-ENKNVVAWASLLTMYIKCG 466

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
            +  A ++F +M  R++VSW  MI+GY+Q G  ++  EL   M+  G  PD VT++++L 
Sbjct: 467 DLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILE 526

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  L AL+ GK +H + ++ +    +  + T++I MY+KCG +  A +VF KI  N  T
Sbjct: 527 ACGALSALERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGEVTEARTVFDKIS-NRDT 584

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V+ +N++++G  QHG+G  ++ +F+ M    + P+ +TF  V+ AC   GLV+EG++ F 
Sbjct: 585 VA-WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFR 643

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M  ++ +KP  +HYGCMVDLL R GRL EA   IQ MP + +  +W ALL AC+ H N 
Sbjct: 644 IMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNV 703

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++ E A   +L LEP + + YV LSN+ A+  RW+++ +VRK+MDD G++K  G S IE 
Sbjct: 704 QLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEI 763

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           +G +H F+A   +HP+   I   L+ +T ++K AGY P+   V+ DVDE +KE  + +HS
Sbjct: 764 DGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHS 823

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+A+GL+ +     IRI KNLR+CGDCH A K +S+I +REI+ RDA RFH FK G 
Sbjct: 824 EKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGT 883

Query: 713 CSCMDFW 719
           CSC DFW
Sbjct: 884 CSCGDFW 890



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 228/439 (51%), Gaps = 44/439 (10%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
           +EA+ L   +  +G++  +N T+  ++  CA+L  F+ G  +H  + + GL  D+++ N+
Sbjct: 60  KEAIQLLGIIKQRGLLVNSN-TYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNS 118

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           LI+FYS FG + +  +VF     RD+V+++++I  YA    P  A   F +M+D+ I+P+
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             TF+++  AC   +     ++ H VV K  G + +++ + TA+I MY+KCG +++A  +
Sbjct: 179 RITFLSILKACNNYSMLEKAREIHTVV-KASG-METDVAVATALITMYSKCGEISLACEI 236

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  M   ++  +W+++I    +  K+                               ++A
Sbjct: 237 FQKM-KERNVVSWTAIIQANAQHRKL-------------------------------NEA 264

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
            EL+ KM   GI P+ VT V++L +C    AL+ G+R+H  +I       ++ +  A+I 
Sbjct: 265 FELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIH-SHISERGLETDVVVANALIT 323

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL--GETSIAVFREMELM---G 444
           MY KC  I  A   F ++ K  + V  ++++I+G AQ G    E+   VF+ +E M   G
Sbjct: 324 MYCKCNCIQDARETFDRMSK--RDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREG 381

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           + P+ VTF+++L ACS  G +E+G+Q    +   G +        + ++ A+ G + EA 
Sbjct: 382 VFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAE 441

Query: 505 GLIQSMPYDANSVIWRALL 523
            +   M  + N V W +LL
Sbjct: 442 QVFSKME-NKNVVAWASLL 459


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/711 (40%), Positives = 423/711 (59%), Gaps = 72/711 (10%)

Query: 37  NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           N + + S+L+ F  L+   +GL  +  +F  I  PN   WNT++RG++ S  P  AL LY
Sbjct: 7   NTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLY 66

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             M+S G+ SPN++TFPF+  SCA+  + + G QIH  I+K+GL  DL +  +LI  Y+ 
Sbjct: 67  VYMISLGL-SPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQ 125

Query: 157 FGYINNAHKVFEGSLARDLVSY-------------------------------NTLINGY 185
            G + +AHKVF+ S  RD+VSY                               N +I+GY
Sbjct: 126 NGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGY 185

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A++     AL LF +M    ++PD  T   + S CT   +  +G+Q H+ +  N G  GS
Sbjct: 186 AEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWI-DNHG-FGS 243

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N+ L  A+I++Y+KCG M                                ERA  LF+ +
Sbjct: 244 NLKLVNALIDLYSKCGEM--------------------------------ERAHGLFEGL 271

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             +D++SW  +I GY+ +    +AL +F +M  LG  P++VTM+++L AC  LGA+D G+
Sbjct: 272 QYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGR 331

Query: 366 RLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            +H  YI+  + G   N  L T++IDMYAKCG+I+ A  VF  I    K++S  N++I G
Sbjct: 332 WIHV-YIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILN--KSLSSCNAMIFG 388

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
            A HG  + +  +   M+  G++PD +TFV +L ACSH GL + G++ F+SM L+Y I+P
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP 448

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           ++EHYGCM+DLL R G   EA  LI SM  + + VIW +LL AC++H+N ++GE+  QKL
Sbjct: 449 KLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKL 508

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           + +EP +   YVLLSN+ A + RW++  +VR L++D G++K PG S IE +  +H FL  
Sbjct: 509 MKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIG 568

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            K HPQ KEI  ML+++   L   G+V +T +V+ +++EE KE  +SYHSEKLA+AFGLI
Sbjct: 569 DKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLI 628

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           +++    +RI KNLR+C +CH A KL+S+IY+REI+ RD  RFH FK G C
Sbjct: 629 STKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/700 (40%), Positives = 431/700 (61%), Gaps = 13/700 (1%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI-----LFSQIDNPNIFIWNTLM 80
           QIH QI+HS      +++ L+S  ALS C      S +     +FSQI NP+    N L+
Sbjct: 34  QIHAQILHSNTTPE-NTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQLL 92

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
           R  SRS  P++ + LY ++ +    + + F+FP +L + +++S+F  G +IH    K G 
Sbjct: 93  RHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGF 152

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
             D FI+  LI  Y+    I +A  +F+     D V++N +I+GY Q      AL LF  
Sbjct: 153 VDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFED 212

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M+ S ++PD+     + SAC    +   G+  H  V  N   + S+  L+TA+INMYA C
Sbjct: 213 MRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSH--LQTALINMYANC 270

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G M++A +++  +  SK     ++M+SGY + G ++ AR +FDQM +RDLV W+AMISGY
Sbjct: 271 GAMDLARKIYDGLS-SKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGY 329

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           ++     +AL+LF +M      PD++TM++V+ AC  +GAL     +H  Y++   FGR 
Sbjct: 330 AESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHT-YVDRSGFGRA 388

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + +  A+IDMYAKCG++  A  VF  +P+  K V  ++S+I+  A HG  +++I +FR M
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVFENMPR--KNVISWSSMINAFAMHGNADSAIKLFRRM 446

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
           + + ++P+GVTF+ VL AC H GLVEEG++ F SM+N +GI P  EHYGCMVDL  R   
Sbjct: 447 KEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANF 506

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L +A  LI++MP+  N +IW +L++AC++H  A++GE A ++LL+LEPDH    V+LSN+
Sbjct: 507 LRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNI 566

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A+  RW +   +RK M   GI K    S IE N  +H F+ + + H Q+ EI   L ++
Sbjct: 567 YAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEV 626

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             KLK  GY P+T  ++ D++EE+K+ +V +HSEKLA+ +GLI+ R++  IRI KNLRIC
Sbjct: 627 VSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRIC 686

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   KL+S++Y+ EI+VRD  RFH    G CSC D+W
Sbjct: 687 EDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 292/754 (38%), Positives = 440/754 (58%), Gaps = 78/754 (10%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRI 63
           +LE+   L LL  C  +    QIH  I+ SGL++ + + S+LI F ALS  ++ L  +  
Sbjct: 22  LLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRD-LSYALS 80

Query: 64  LFSQIDN--PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           LF  I +  PNIFIWNTL+R +S + +P  +L L++ ML  G+  PN+ TFP +  SCA+
Sbjct: 81  LFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLY-PNSHTFPSLFKSCAK 139

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS----------IF-------------- 157
             +     Q+H H +K  L     +  +LIH YS          +F              
Sbjct: 140 SKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTAL 199

Query: 158 -------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
                  G++++A ++F+   A+D+VS+N +I GY Q      AL  F +MQ++ + P+ 
Sbjct: 200 ITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQ 259

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V++ SAC  L    +GK   + V ++ G  G N+ L  A+++MY+KCG         
Sbjct: 260 STMVSVLSACGHLRSLELGKWIGSWV-RDRG-FGKNLQLVNALVDMYSKCG--------- 308

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                  +I  AR+LFD M+ +D++ W  MI GY  +  + +AL
Sbjct: 309 -----------------------EIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEAL 345

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG----RNIFLTTA 386
            LF  M    + P++VT +AVL AC  LGALD GK +H  YI+  + G     N+ L T+
Sbjct: 346 VLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHA-YIDKNLKGTGNVNNVSLWTS 404

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +I MYAKCG ++ A  VF  +    ++++ +N++ISGLA +G  E ++ +F EM   G +
Sbjct: 405 IIVMYAKCGCVEVAEQVFRSMGS--RSLASWNAMISGLAMNGHAERALGLFEEMINEGFQ 462

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           PD +TFV VL AC+  G VE G ++F SM  +YGI P+++HYGCM+DLLAR G+ DEA  
Sbjct: 463 PDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKV 522

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
           L+ +M  + +  IW +LL ACR+H   + GE   ++L +LEP++   YVLLSN+ A   R
Sbjct: 523 LMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGR 582

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           W++  ++R  ++D G++K PG + IE +G +H FL   K HPQ++ I  ML ++   L+ 
Sbjct: 583 WDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEE 642

Query: 626 AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLA 685
            G+VP+T +V++D+DEE KE  ++ HSEKLA+AFGLI+++   TIRI KNLR+C +CH A
Sbjct: 643 TGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSA 702

Query: 686 FKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KL+S+I+ REI+ RD  RFH FK G CSC D W
Sbjct: 703 TKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/704 (40%), Positives = 427/704 (60%), Gaps = 44/704 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFSQIDNPNIFIWN 77
           KSL QA Q H  ++  GL+     + LI+    S       + + ++F+Q  +PNIF++N
Sbjct: 14  KSLHQAKQCHCLLLRLGLHQ---DTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYN 70

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS-FKSGCQIHCHII 136
           TL+RG   +D+ ++A+ +Y SM   G  +P+NFTFPFVL +C RL   F  G  +H  +I
Sbjct: 71  TLIRGMVSNDAFRDAVSVYASMRQHGF-APDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G ++D+F++  L+  YS  G++ +A KVF+    +++VS+  +I GY +      AL 
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALG 189

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           LFR + +  ++PD+FT V +  AC+ + D   G+     + ++ G VG N+ + T++++M
Sbjct: 190 LFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRES-GSVG-NVFVATSLVDM 247

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           YAKCG M  A RVF  M + K    WS++I GY   G  +                    
Sbjct: 248 YAKCGSMEEARRVFDGM-VEKDVVCWSALIQGYASNGMPK-------------------- 286

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
                      +AL++F +M+   + PD   MV V  AC  LGAL+ G    +  ++   
Sbjct: 287 -----------EALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGN-WARGLMDGDE 334

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           F  N  L TA+ID YAKCGS+  A  VF  + +  K   +FN++ISGLA  G    +  V
Sbjct: 335 FLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRR--KDCVVFNAVISGLAMCGHVGAAFGV 392

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F +M  +G++PDG TFV +LC C+H GLV++G ++F  M + + + P +EHYGCMVDL A
Sbjct: 393 FGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQA 452

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G L EA  LI+SMP +ANS++W ALL  CRLH++ ++ E   ++L++LEP +  HYVL
Sbjct: 453 RAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVL 512

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+ + ++RW+EA ++R  ++  G+QK PG S++E +G +H FL    SHP + +I   
Sbjct: 513 LSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEK 572

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+ +   L+ AGY P T  V+FDV+EEEKE  +  HSEKLA+AF LI++ +K+ IR+ KN
Sbjct: 573 LESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKN 632

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+CGDCH A KL+S++  REI+VRD  RFH F +G+CSC D+W
Sbjct: 633 LRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 202/430 (46%), Gaps = 41/430 (9%)

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L S     Q HC +++ GL  D ++ N L+     F     A  VF  +   ++  YNTL
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNL 240
           I G         A+ ++  M+     PD FTF  +  ACT L     +G   H++V K  
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT- 131

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                ++ +KT ++ +Y+K G +                                  AR+
Sbjct: 132 -GFDWDVFVKTGLVCLYSKNGFLT--------------------------------DARK 158

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +FD++ ++++VSWTA+I GY + G F +AL LF  +  +G+ PD  T+V +L AC  +G 
Sbjct: 159 VFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGD 218

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L  G+ +     E+   G N+F+ T+++DMYAKCGS++ A  VF  + +  K V  ++++
Sbjct: 219 LASGRWIDGYMRESGSVG-NVFVATSLVDMYAKCGSMEEARRVFDGMVE--KDVVCWSAL 275

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           I G A +G+ + ++ VF EM+   ++PD    V V  ACS  G +E G      M     
Sbjct: 276 IQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEF 335

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL--HRNAKIGEIA 538
                    ++D  A+ G + +A  + + M    + V++ A+++   +  H  A  G   
Sbjct: 336 LSNPVLGTALIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVGAAFGVFG 394

Query: 539 GQKLLDLEPD 548
               + ++PD
Sbjct: 395 QMVKVGMQPD 404



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 204/440 (46%), Gaps = 48/440 (10%)

Query: 14  LLESCKSLKQ----ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNG-LFRSRILFSQ 67
           +L++C  L       L +H  ++ +G +  +   + L+  ++    KNG L  +R +F +
Sbjct: 107 VLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYS----KNGFLTDARKVFDE 162

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I   N+  W  ++ GY  S    EAL L+  +L  G+  P++FT   +L +C+R+    S
Sbjct: 163 IPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGL-RPDSFTLVRILYACSRVGDLAS 221

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  I  ++ + G   ++F+  +L+  Y+  G +  A +VF+G + +D+V ++ LI GYA 
Sbjct: 222 GRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYAS 281

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  AL +F +MQ   ++PD +  V +FSAC+ L    +G     ++  +     SN 
Sbjct: 282 NGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDE--FLSNP 339

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           +L TA+I+ YAKCG +  A+ VF  M   K    ++++ISG    G +            
Sbjct: 340 VLGTALIDFYAKCGSVAQAKEVFKGM-RRKDCVVFNAVISGLAMCGHV------------ 386

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                A  +FG+M  +G+ PD  T V +L  C   G +D G R 
Sbjct: 387 -------------------GAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRY 427

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
                        I     ++D+ A+ G +  A  +   +P    ++ ++ +++ G   H
Sbjct: 428 FSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSI-VWGALLGGCRLH 486

Query: 428 GLGETSIAVFREMELMGLKP 447
              +T +A     +L+ L+P
Sbjct: 487 --KDTQLAEHVLKQLIELEP 504


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/714 (40%), Positives = 434/714 (60%), Gaps = 55/714 (7%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGC---KNGLFRSRILFSQ 67
           +L+L   CK+L+   Q+H QI+     HH S  QL +  +LS        L  ++ +F  
Sbjct: 99  ILSLFNPCKTLRHLKQVHAQII----THHNSPFQLSALASLSALSPFPTFLAYAKTIFHH 154

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + NP   ++N+L+R  S S +P EAL LY +ML  G+  P++ T+PFV+ +C   S    
Sbjct: 155 LQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL-KPDHMTYPFVIKACNESSVTWF 213

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H H++K G E D +I ++LIH Y+    +  A ++F    ARD+VS+N +I+GY +
Sbjct: 214 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             E   A  +F +M                                         V  ++
Sbjct: 274 HVEMGHARMVFDRM-----------------------------------------VCRDV 292

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           +    +IN YA  G ++ A+R+F  M   ++  +W+SM++G+ + G +E A  LF +M  
Sbjct: 293 ISWNTMINGYAIVGKIDEAKRLFDEMP-ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPC 351

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+VSW +M++ Y+Q G  ++AL LF +M ++G+ P E T+V++L AC  LGALD G  L
Sbjct: 352 RDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL 411

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  YI +     N  + TA++DMYAKCG I  A  VF  +    K V  +N+II+G+A H
Sbjct: 412 HT-YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES--KDVLAWNTIIAGMAIH 468

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G  + +  +F+EM+  G++P+ +TFV +L ACSH G+V+EG++  + M + YGI+P++EH
Sbjct: 469 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 528

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGC++DLLAR G L+EA  LI +MP + N     ALL  CR+H N ++GE+ G++L++L+
Sbjct: 529 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 588

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P H   Y+LLSN+ A   +W++AR+VR LM  +GI K PG S IE  G +HRF+A   SH
Sbjct: 589 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 648

Query: 607 PQTKEIELMLKDMTMKLKSA-GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           P++ +I   L ++  +LKSA GY  +T  V+ D++EE+KE  ++ HSEKLA+A+GL++  
Sbjct: 649 PESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLD 708

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           SKE IRI KNLR+C DCH   KL+S++Y REI+VRD  RFH F+ G CSC+DFW
Sbjct: 709 SKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/739 (38%), Positives = 436/739 (58%), Gaps = 73/739 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL +CK+L+    IH +++ +GL N + + S+LI F  LS   +GL  +  +F  I  
Sbjct: 6   LSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQE 65

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+ IWNT+ RG++ S  P  AL LY  M+S G+V PN++TFPF+L +CA+  +F+ G Q
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLV-PNSYTFPFLLKACAKSKAFREGQQ 124

Query: 131 IHCHIIKFGLEFDLFIRNALIHFY----------SIF---------------------GY 159
           IH H++K G + DL++  +LI  Y           +F                     GY
Sbjct: 125 IHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGY 184

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I +A K+F+    +D+VS+N LI+GYA+      AL LF++M  + ++PD  T V + SA
Sbjct: 185 IXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSA 244

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +     +G+Q H+ +  +    GSN+ +  A+I++Y KCG                  
Sbjct: 245 CAQSASIELGRQVHSWIDDH--GFGSNLKIVNALIDLYIKCG------------------ 284

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E A  LF+ +  +D++SW  +I GY+ +  + +AL LF +M   
Sbjct: 285 --------------EVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 330

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSI 397
           G  P+EVTM+++L AC  LGA+D G+ +H  YI+  + G      L T++IDMYAKCG I
Sbjct: 331 GESPNEVTMLSILPACAHLGAIDIGRWIHV-YIDKRLKGVSNPSSLRTSLIDMYAKCGDI 389

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF  +    +++S +N++I G A HG    +  +F  M   G++PD +TFV +L 
Sbjct: 390 EAAQQVFDSMLN--RSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLS 447

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH G+++ G+  F SM  +Y I P++EHYGCM+DLL   G   EA  +I SM  D + 
Sbjct: 448 ACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDG 507

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VIW +LL AC++H N ++GE   Q L+ +EP +   YVLLSN+ A   RW E  + R L+
Sbjct: 508 VIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALL 567

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           +D G++K PG S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+
Sbjct: 568 NDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+RE
Sbjct: 628 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 687

Query: 697 IMVRDAIRFHLFKKGNCSC 715
           I+ RD  RFH F  G CSC
Sbjct: 688 IIARDRTRFHHFXDGVCSC 706


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/743 (38%), Positives = 434/743 (58%), Gaps = 73/743 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL  CK+L+    IH Q++ +GL N + + S+L+    LS   +GL  +  +F  I  
Sbjct: 6   LSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQE 65

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P + IWNT+ RG++ S  P  AL LY  M+S G++ PN++TFPF+L SCA+  +FK G Q
Sbjct: 66  PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLL-PNSYTFPFLLKSCAKSXAFKEGQQ 124

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYS--------------------------IFGY----- 159
           +H  ++KFG + DL+I  +LI  Y                           I GY     
Sbjct: 125 LHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGX 184

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I +AHK+F+    +D+VS+N  I+GYA+      AL LF+KM  + ++PD  T V + SA
Sbjct: 185 IESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSA 244

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +     +G+Q H+ +  N    G N+ +  A+I++Y+KCG                  
Sbjct: 245 CAQSGSIELGRQVHSWI--NDHGFGXNLKIVNALIDLYSKCG------------------ 284

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E A  LF  +  +D++SW  +I GY+ +  + +AL LF  M   
Sbjct: 285 --------------ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRS 330

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSI 397
           G  P++VTM+++L AC  LGA+D G+ +H  YI+  + G      L T++IDMYAKCG I
Sbjct: 331 GEKPNDVTMLSILSACAHLGAIDIGRWIHV-YIDKRLKGVTNASSLRTSLIDMYAKCGDI 389

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF  +    +++S +N++I G A HG    +  +F  M   G++PD +TFV +L 
Sbjct: 390 EAAQQVFDSMLN--RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 447

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH G+++ G+  F SM  +Y + P++EHYGCM+DL    G   EA  +I +M  + + 
Sbjct: 448 ACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDG 507

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VIW +LL AC++H N ++GE   Q L+ +EP++   YVLLSN+ A   RW E  + R L+
Sbjct: 508 VIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALL 567

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           +D G++K PG S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+
Sbjct: 568 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+RE
Sbjct: 628 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 687

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+ RD  RFH F+ G CSC D+W
Sbjct: 688 IIARDRTRFHHFRDGECSCNDYW 710


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/708 (40%), Positives = 420/708 (59%), Gaps = 51/708 (7%)

Query: 15  LESCKSLKQALQIHG-QIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           L++C + ++A Q+H   I  + LNH   SS+L++ +A     N L  +  LF  I  P +
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINN-LQYAHSLFDWIQEPTL 80

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
             WN L++ Y  +    +A+ L+  +L   +  P++FT P VL  CARL + + G QIH 
Sbjct: 81  VSWNLLIKCYIENQRSNDAIALFCKLLCDFV--PDSFTLPCVLKGCARLGALQEGKQIHG 138

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            ++K G   D F+ ++L+  YS  G I    KVF+    +D+VS+N+LI+GYA+  E   
Sbjct: 139 LVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIEL 198

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           AL +F +M +     D+F++                                     T +
Sbjct: 199 ALEMFEEMPEK----DSFSW-------------------------------------TIL 217

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+  +K G +  A  VF  M + +++ +W++MI+GY + G    A++LFDQM +R LV+W
Sbjct: 218 IDGLSKSGKLEAARDVFDRMPI-RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTW 276

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            +MI+GY +   F++AL+LF  M    I P+  T++  + A  G+ +L  G+ +H  YI 
Sbjct: 277 NSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVH-SYIV 335

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  +  L T +I+MY+KCGS+ +AL VF  IPK  K +  + S+I GL  HGL E +
Sbjct: 336 KSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPK--KKLGHWTSVIVGLGMHGLVEQT 393

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492
           + +F EM   GLKP  +TF+ VL ACSH G  E+  ++F+ M  +YGIKP +EHYGC++D
Sbjct: 394 LELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLID 453

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           +L R G L+EA   I+ MP  AN VIW +LL+  R H N ++GE A Q L+DL PD    
Sbjct: 454 VLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGC 513

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YV+LSNM A    WE+ RQVR++M   G++K PG S IEH G++H F+   KSHPQT+EI
Sbjct: 514 YVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEI 573

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEE-EKETVVSYHSEKLALAFGLINSRSKETIR 671
            + L +M  KL  AG++P+T QV+  ++E+ EKE  +  HSE+LA+AFGL+N +    IR
Sbjct: 574 YIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIR 633

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I KNLRIC DCH   KLLS IY REI++RD  RFH FK G+CSC DFW
Sbjct: 634 IIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/743 (38%), Positives = 437/743 (58%), Gaps = 73/743 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL +CK+L+    IH Q++ +GL N + + S+LI F  LS   +GL  +  +F  I  
Sbjct: 6   LSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQE 65

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+ IWNT+ RG++ S  P  AL LY  M+S G++ PN +TFPF+L SCA+  +F+ G Q
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSKAFREGQQ 124

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY------------ 178
           IH H++K G + DL++  +LI  Y   G + +A KVF+ S  RD+VSY            
Sbjct: 125 IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY 184

Query: 179 -------------------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                              N +I+GYA+      AL LF++M  + ++PD  T V++ SA
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +     +G+Q H+ +  +    GSN+ +  A+I++Y KCG                  
Sbjct: 245 CAQSASIELGRQVHSWIDDH--GFGSNLKIVNALIDLYIKCG------------------ 284

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E A  LF+ +  +D++SW  +I GY+ +  + +AL LF +M   
Sbjct: 285 --------------EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 330

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT--TAVIDMYAKCGSI 397
           G  P++VTM+++L AC  LGA++ G+ +H  YI   + G     +  T++IDMYAKCG I
Sbjct: 331 GESPNDVTMLSILPACAHLGAIEIGRWIHV-YINKRLKGVANASSHRTSLIDMYAKCGDI 389

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF  I    +++S +N++I G A HG    +  +F  M    ++PD +TFV +L 
Sbjct: 390 EAAQQVFDSILN--RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLS 447

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH G+++ G+  F SM  +Y I P++EHYGCM+DLL   G   EA  +I +M  + + 
Sbjct: 448 ACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG 507

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VIW +LL AC+++ N ++GE   Q L+ +EP +   YVLLSN+ A   RW E  ++R L+
Sbjct: 508 VIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALL 567

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           +D G++K PG S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+
Sbjct: 568 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+RE
Sbjct: 628 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 687

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+ RD  RFH F+ G CSC D+W
Sbjct: 688 IIARDRTRFHHFRDGVCSCNDYW 710


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/727 (37%), Positives = 434/727 (59%), Gaps = 34/727 (4%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSG-----CKNGLFR 60
           + L++L++C +   L++  +IH  +   G+   ++ ++ LI+ ++  G     C+     
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACE----- 213

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
              +F ++   N+  W  +++  ++     EA  LY  ML  GI SPN  TF  +LNSC 
Sbjct: 214 ---VFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI-SPNAVTFVSLLNSCN 269

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              +   G +IH HI + GLE D+ + NALI  Y     +  A ++F+    RD++S++ 
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 181 LINGYAQV----KEPCPALW-LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +I GYAQ     KE    ++ L  +M+   + P+  TF+++  ACT       G+Q HA 
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 236 VYKNLGCVGSNM--LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           + K    VG  +   L+TA+ NMYAKCG +  AE+VFS M  +K+  AW+S +S Y + G
Sbjct: 390 LSK----VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCG 444

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
            +  A ++F +M  R++VSW  MI+GY+Q G   +  EL   M++ G  PD VT++ +L 
Sbjct: 445 DLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILE 504

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  L  L+ GK +H + ++ +    +  + T++I MY+KCG +  A +VF K+  N  T
Sbjct: 505 ACGALAGLERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDT 562

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V+ +N++++G  QHG G  ++ +F+ M    + P+ +T   V+ ACS  GLV+EG++ F 
Sbjct: 563 VA-WNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFR 621

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M  ++ + P+ +HYGCMVDLL R GRL EA   IQSMP + +  +W ALL AC+ H N 
Sbjct: 622 MMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNV 681

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++ E A   +L+LEP + + Y+ LSN+ A+  RW+++ +VR++MDD G++K  G S IE 
Sbjct: 682 QLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEI 741

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           +G +H F+A   +HP+   I   L+ +T ++K AGY P+   V+ DVD+ +KE  + +HS
Sbjct: 742 DGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHS 801

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+A+GL+ + S   IRI KNLR+CGDCH A K +S+I +REI+ RDA RFH F  G 
Sbjct: 802 EKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGT 861

Query: 713 CSCMDFW 719
           CSC DFW
Sbjct: 862 CSCGDFW 868



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/544 (25%), Positives = 254/544 (46%), Gaps = 110/544 (20%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
           +EA+ L   +  +G++  +N T+  V+  CA+   F+ G  +H  + + G+E D+++ N+
Sbjct: 38  REAIQLLGIIKQRGLLVNSN-TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNS 96

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           LI+FYS F  + +A +VF     RD+V+++++I  YA    P  A   F +M D+ I+P+
Sbjct: 97  LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPN 156

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             TF+++  AC   +    G++ H +V K +G + +++ + TA+I MY+KCG +++A  V
Sbjct: 157 RITFLSILKACNNYSILEKGRKIHTIV-KAMG-METDVAVATALITMYSKCGEISVACEV 214

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---------------------- 307
           F  M   ++  +W+++I    +  K+  A +L++QM Q                      
Sbjct: 215 FHKM-TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 308 -----------------RDLVSWTAMISGYSQVGGFSQALELFGKM-------------- 336
                             D++   A+I+ Y +     +A E+F +M              
Sbjct: 274 LNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAG 333

Query: 337 ---------ESL-------------GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                    ES+             G+ P++VT +++LRAC   GAL+ G+++H + +  
Sbjct: 334 YAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE-LSK 392

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL---------------------- 411
           V F  +  L TA+ +MYAKCGSI  A  VF K+  KN+                      
Sbjct: 393 VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKV 452

Query: 412 ------KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
                 + V  +N +I+G AQ+G       +   M+  G +PD VT +T+L AC     +
Sbjct: 453 FSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGL 512

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           E GK      +  G++        ++ + ++ G++ EA  +   M  + ++V W A+LA 
Sbjct: 513 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAG 571

Query: 526 CRLH 529
              H
Sbjct: 572 YGQH 575


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/707 (38%), Positives = 415/707 (58%), Gaps = 49/707 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           K LK A   H +++   L+H      +I    ++   N  +   +      N N F++NT
Sbjct: 15  KCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNT 74

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++RG    D    A+ LY SM    IV P++FTF FVL +CARL+ F  G  IH  + K 
Sbjct: 75  MIRGMVSKDRFNNAVHLYASMHKAAIV-PDSFTFSFVLKACARLNLFHLGVMIHSLVFKT 133

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G + D+F++  ++ FYS  G++ +A KVF+  + +++VS+  +I G  +  +   A+ LF
Sbjct: 134 GFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLF 193

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           R + +S ++PD F  V +  AC  L D   G+                            
Sbjct: 194 RGLLESGLRPDGFVIVRVLRACARLGDLESGRWI-------------------------- 227

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
                   +R     G+S++    +S++  YT+ G +E AR +FD M ++D+V W+AMI 
Sbjct: 228 --------DRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQ 279

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL-----HQQYIE 373
           GY+  G   +A+ELF +M  + + PD   MV  L +C  LGAL+ G        +++++ 
Sbjct: 280 GYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLS 339

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N V G      T++ID YAKCGS++ AL V YK+ K    V +FN++ISGLA +G    +
Sbjct: 340 NPVLG------TSLIDFYAKCGSMEEALGV-YKMMKEKDRV-VFNAVISGLAMYGQVGAA 391

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492
             VF +M   G+ P+  TFV +LC C+H GLV++G+ +F SM  ++ + P +EHYGCMVD
Sbjct: 392 FGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVD 451

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LLAR G LDEA+ LI+ MP  AN ++W +LL  CRLHR  ++ E   ++L++LEP +  H
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGH 511

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVLLSN+ + + RW+EA ++R  +++ G+QK PG+S++E +G +H FL    SHP +++I
Sbjct: 512 YVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKI 571

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
              L+ +   LK AGY P T  V+FDV+EEEKE  +  HSEKLA+AF LI++ +K  IR+
Sbjct: 572 YEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRV 631

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCH A K +S++  REI++RD  RFH F  G CSC D+W
Sbjct: 632 VKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/739 (38%), Positives = 434/739 (58%), Gaps = 44/739 (5%)

Query: 19  KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN-P-NIFI 75
           +S++QA ++H  +V SG L H  S+S L++              R      D  P + F+
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFL 69

Query: 76  WNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ-IHC 133
           ++T +R   R+ S P+  L+LY  M   G+ + + FTF F+   CAR  +    CQ +H 
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCT-DAFTFHFLFKCCARGRAHVLLCQMLHA 128

Query: 134 HIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFEG----------------------- 169
              +  L   +  + N +IH Y   G   +A + F+                        
Sbjct: 129 ACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLD 188

Query: 170 --------SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
                   S AR+++S+  LI+GY++      A+  F  M    I+PD  T + + SAC 
Sbjct: 189 DAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACA 248

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           +L D   G+  H +V +  G + S  L+  A+I+MYAKCG +  A  VF  +G  +   +
Sbjct: 249 QLKDLVFGRSLHKLVGEK-GMLMSGKLV-VALIDMYAKCGDIGRAWEVFDALGRGRRPQS 306

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W++MI GY + G ++ AR LFDQM+ RDLV++ ++I+GY   G   +AL LF +M    +
Sbjct: 307 WNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDL 366

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
             D  TMV++L AC  LGAL  G+ LH   IE  +   +I+L TA++DMY KCG ++ A 
Sbjct: 367 RADNFTMVSLLTACASLGALPQGRALHA-CIEQRLVEVDIYLGTALLDMYLKCGRVEEAS 425

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF  +  +++ V  ++++I+GLA +G+G+ ++  F  M++ G +P+ VT++ +L ACSH
Sbjct: 426 LVFQAM--SVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSH 483

Query: 462 GGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             L++EG+ +FE M L + I+P +EHYGCM+DLL R G LDEA  L+++MP   N+VIW 
Sbjct: 484 SCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWA 543

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           ++L+ACR+H++A +   A + LL LEPD  A YV L N+  ++ +WE+A Q+R+LM++ G
Sbjct: 544 SILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERG 603

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           ++K  G+S I   G +H+F+   ++HPQ  EI  M++++T +LKS GY P T Q+  DVD
Sbjct: 604 VKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVD 663

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEEKE  +  HSEK+A+AFGLI+      + I KNLR+C DCH A KL+S I+ REI+VR
Sbjct: 664 EEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVR 723

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH F+ G CSC DFW
Sbjct: 724 DRSRFHHFRDGTCSCNDFW 742


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/752 (38%), Positives = 437/752 (58%), Gaps = 75/752 (9%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRI 63
           +LE    L LLE CK++    QIH  I+ +GLN+ +   S+LI F A+S   + L  +  
Sbjct: 25  ILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGD-LSYALS 83

Query: 64  LFS---QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           LF    Q    N+FIWN+L+RGYS S SP  +L L++ ML  G V PN+ TFPF+  SC 
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYG-VQPNSHTFPFLFKSCT 142

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS------------------------- 155
           +  +   G Q+H H +K  L F+  +  ++IH Y+                         
Sbjct: 143 KAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTA 202

Query: 156 -IFGYI-----NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
            I GY+     ++A ++F+    +D+VS+N +I+GY Q      A+  F +MQ++ + P+
Sbjct: 203 LITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPN 262

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T V + SAC       +GK   + V  N    GSN+ L  A+I+MY KCG  ++A   
Sbjct: 263 KSTMVVVLSACGHTRSGELGKWIGSWVRDN--GFGSNLQLTNALIDMYCKCGETDIA--- 317

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                                        R+LFD ++++D++SW  MI GYS +  + +A
Sbjct: 318 -----------------------------RELFDGIEEKDVISWNTMIGGYSYLSLYEEA 348

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           L LF  M    + P++VT + +L AC  LGALD GK +H    +N+    N  L T++ID
Sbjct: 349 LALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLID 408

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD 448
           MYAKCG I+ A  VF  +  + + ++ +N+++SG A HG  E ++A+F EM   GL +PD
Sbjct: 409 MYAKCGCIEAAERVFRSM--HSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPD 466

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            +TFV VL AC+  GLV+ G Q+F SM+ +YGI P+++HYGCM+DLLAR  + +EA  L+
Sbjct: 467 DITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILM 526

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
           ++M  + +  IW +LL+AC+ H   + GE   ++L  LEP++   +VLLSN+ A   RW+
Sbjct: 527 KNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWD 586

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           +  ++R  ++D G++K PG + IE +G +H FL   K HP+   I  ML ++   L+  G
Sbjct: 587 DVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENG 646

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           +VPNT +V++D+DEE KE  +S HSEKLA++FGLI ++   TIRI KNLR+CG+CH A K
Sbjct: 647 FVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATK 706

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+S+I+ REI+ RD  RFH FK G CSC D W
Sbjct: 707 LISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/698 (39%), Positives = 413/698 (59%), Gaps = 45/698 (6%)

Query: 26  QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           +IHG ++  GL+  +   + L+  +    C   +  +R++F ++   ++  W+T++R  S
Sbjct: 115 EIHGFVLKKGLDRDVFVGNALMLMYGECAC---VEYARLVFDKMMERDVVSWSTMIRSLS 171

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R+     AL L   M +   V P+      ++N  A  ++ + G  +H ++I+      +
Sbjct: 172 RNKEFDMALELIREM-NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHM 230

Query: 145 FI--RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
            +    AL+  Y+  G++  A ++F G   + +VS+  +I G  +         LF +MQ
Sbjct: 231 GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ 290

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +  I P+  T +++   C      ++GKQ HA + +N   V  ++ L TA+++MY KC  
Sbjct: 291 EENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV--SLALATALVDMYGKCS- 347

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                                           I  AR LFD    RD++ WTAM+S Y+Q
Sbjct: 348 -------------------------------DIRNARALFDSTQNRDVMIWTAMLSAYAQ 376

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                QA  LF +M + G+ P +VT+V++L  C   GALD GK +H  YI+      +  
Sbjct: 377 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS-YIDKERVEVDCI 435

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L TA++DMYAKCG I+ A  +F  I    + + ++N+II+G A HG GE ++ +F EME 
Sbjct: 436 LNTALVDMYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMER 493

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G+KP+ +TF+ +L ACSH GLV EGK+ FE M++ +G+ PQ+EHYGCMVDLL R G LD
Sbjct: 494 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 553

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA+ +I+SMP   N+++W AL+AACRLH+N ++GE+A  +LL++EP++  + VL+SN+ A
Sbjct: 554 EAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYA 613

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
              RW +A  VRK M   G++K PG S IE NGT+H FL   +SHPQ + I  ML +M  
Sbjct: 614 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRR 673

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           KL  AGYVP+T  V+ ++DEEEKET ++YHSEKLA+AFGLI++     IRI KNLR+C D
Sbjct: 674 KLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCND 733

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A KLLS+IY R I+VRD  RFH F++G CSC D+W
Sbjct: 734 CHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 214/422 (50%), Gaps = 38/422 (9%)

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           NF  P VL +C ++S  + G +IH  ++K GL+ D+F+ NAL+  Y     +  A  VF+
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
             + RD+VS++T+I   ++ KE   AL L R+M    ++P     V+M +   +  + R+
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           GK  HA V +N       +   TA+++MYAKCG + +A ++F+ +   K+  +W++MI+G
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAG 272

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
             R  ++E   +LF +M + +                               I P+E+TM
Sbjct: 273 CIRSNRLEEGTKLFIRMQEEN-------------------------------IFPNEITM 301

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++++  C   GAL  GK+LH  YI    F  ++ L TA++DMY KC  I  A ++F    
Sbjct: 302 LSLIVECGFTGALQLGKQLH-AYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQ 360

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              + V ++ +++S  AQ    + +  +F +M   G++P  VT V++L  C+  G ++ G
Sbjct: 361 N--RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG 418

Query: 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL-IQSMPYDANSVIWRALLAACR 527
           K     +    ++        +VD+ A+ G ++ A  L I+++  D    +W A++    
Sbjct: 419 KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI--CMWNAIITGFA 476

Query: 528 LH 529
           +H
Sbjct: 477 MH 478


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/718 (38%), Positives = 422/718 (58%), Gaps = 15/718 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +++L  L  CKSL    Q+H  I+ + +NH ++S  L +    S   N  +   +  S  
Sbjct: 13  NTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF-LFNLSVSSSSINLSYALNVFSSIP 71

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P   ++N  +R  SRS  P+  ++ Y  +   G    + F+F  +L + +++S+   G
Sbjct: 72  SPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVG-GRLDQFSFLPILKAVSKVSALFEG 130

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            ++H    K     D F+    +  Y+  G IN A  VF+    RD+V++NT+I  Y + 
Sbjct: 131 MELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRF 190

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A  LF +M+DS + PD      + SAC    + R  +  +  + +N   + +++L
Sbjct: 191 GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL 250

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
             TA++ MYA  G M+MA   F  M + ++    ++M+SGY++ G+++ A+ +FDQ +++
Sbjct: 251 --TALVTMYAGAGCMDMAREFFRKMSV-RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKK 307

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           DLV WT MIS Y +     +AL +F +M   GI PD V+M +V+ AC  LG LD  K +H
Sbjct: 308 DLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
                N +    + +  A+I+MYAKCG +D    VF K+P+  + V  ++S+I+ L+ HG
Sbjct: 368 SCIHVNGL-ESELSINNALINMYAKCGGLDATRDVFEKMPR--RNVVSWSSMINALSMHG 424

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
               ++++F  M+   ++P+ VTFV VL  CSH GLVEEGK+ F SM + Y I P++EHY
Sbjct: 425 EASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHY 484

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDL  R   L EA  +I+SMP  +N VIW +L++ACR+H   ++G+ A +++L+LEP
Sbjct: 485 GCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEP 544

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           DH    VL+SN+ A   RWE+ R +R++M++  + K  G S I+ NG  H FL   K H 
Sbjct: 545 DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHK 604

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q+ EI   L ++  KLK AGYVP+   V+ DV+EEEK+ +V +HSEKLAL FGL+N   +
Sbjct: 605 QSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKE 664

Query: 668 E------TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           E       IRI KNLR+C DCHL FKL+S++Y REI+VRD  RFH +K G CSC D+W
Sbjct: 665 EEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/703 (37%), Positives = 420/703 (59%), Gaps = 45/703 (6%)

Query: 20   SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS-RILFSQIDNPNIFIWN 77
            +LK    +H  I+++G    ++  + L+  +A    K G ++  R +F ++ N ++  WN
Sbjct: 360  ALKWGKTVHSHILNAGHESDLAVGTALVKMYA----KCGSYKDCRQVFEKLVNRDLIAWN 415

Query: 78   TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            T++ G +   + +EA  +Y  M  +G++ PN  T+  +LN+C   ++   G +IH  ++K
Sbjct: 416  TMIGGLAEGGNWEEASEIYHQMQREGMM-PNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 138  FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
             G  FD+ ++NALI  Y+  G I +A  +F   + +D++S+  +I G A+      AL +
Sbjct: 475  DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 198  FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            F+ MQ + ++P+  T+ ++ +AC+       G++ H  V +    + ++  +   ++NMY
Sbjct: 535  FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE--AGLATDAHVANTLVNMY 592

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            + CG                                 ++ ARQ+FD+M QRD+V++ AMI
Sbjct: 593  SMCG--------------------------------SVKDARQVFDRMTQRDIVAYNAMI 620

Query: 318  SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
             GY+      +AL+LF +++  G+ PD+VT + +L AC   G+L++ K +H   +++   
Sbjct: 621  GGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYL 680

Query: 378  GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
              +  L  A++  YAKCGS   AL VF K+ K  + V  +N+II G AQHG G+  + +F
Sbjct: 681  S-DTSLGNALVSTYAKCGSFSDALLVFDKMMK--RNVISWNAIIGGCAQHGRGQDVLQLF 737

Query: 438  REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
              M++ G+KPD VTFV++L ACSH GL+EEG+++F SM  ++GI P +EHYGCMVDLL R
Sbjct: 738  ERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGR 797

Query: 497  DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
             G+LDE   LI++MP+ AN+ IW ALL ACR+H N  + E A +  L L+PD+ A YV L
Sbjct: 798  AGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVAL 857

Query: 557  SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
            S+M A    W+ A ++RKLM+  G+ K PG S+IE    LH F+A  +SHP++++I   L
Sbjct: 858  SHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAEL 917

Query: 617  KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
              +T  +K  GYVP+T  V+ DVDE EKE  V +HSE+LA+A+GLI++     IRI KNL
Sbjct: 918  DKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNL 977

Query: 677  RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            R+C DCH A K +++I  REI+ RD  RFH FK G CSC D+W
Sbjct: 978  RVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 153/581 (26%), Positives = 289/581 (49%), Gaps = 59/581 (10%)

Query: 12  LALLESC---KSLKQALQIHGQIV-HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           + +L+ C   K L    ++H  I+ H  +    + + LI+ +   G    +  +R ++++
Sbjct: 145 MKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCG---SIEEARQVWNK 201

Query: 68  IDNP--NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +++    +  WN ++ GY +    +EAL L   M   G+      T    L+SC   S+ 
Sbjct: 202 LNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRL-LSSCKSPSAL 260

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G +IH   +K  L FD+ + N +++ Y+  G I+ A +VF+    + +VS+  +I GY
Sbjct: 261 ECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGY 320

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A       A  +F+KMQ   + P+  T++ + +A +     + GK  H+ +  N G   S
Sbjct: 321 ADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHIL-NAG-HES 378

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ + TA++ MYAKCG                                  +  RQ+F+++
Sbjct: 379 DLAVGTALVKMYAKCG--------------------------------SYKDCRQVFEKL 406

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             RDL++W  MI G ++ G + +A E++ +M+  G+ P+++T V +L ACV   AL +G+
Sbjct: 407 VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGR 466

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H + +++  F  +I +  A+I MYA+CGSI  A  +F K+ +  K +  + ++I GLA
Sbjct: 467 EIHSRVVKD-GFMFDISVQNALISMYARCGSIKDARLLFNKMVR--KDIISWTAMIGGLA 523

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           + GLG  ++AVF++M+  GLKP+ VT+ ++L ACS    ++ G++  + ++  G+     
Sbjct: 524 KSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH 583

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD- 544
               +V++ +  G + +A  +   M    + V + A++     H   K       KL D 
Sbjct: 584 VANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAHNLGK----EALKLFDR 638

Query: 545 -----LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
                L+PD    Y+ + N  A +   E A+++  L+   G
Sbjct: 639 LQEEGLKPDK-VTYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 176/341 (51%), Gaps = 11/341 (3%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRI 63
           + ++S+L    S  +L    +IH Q++ +GL  + H++++ L++ +++ G    +  +R 
Sbjct: 548 VTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANT-LVNMYSMCG---SVKDARQ 603

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   +I  +N ++ GY+  +  +EAL L+  +  +G+  P+  T+  +LN+CA   
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL-KPDKVTYINMLNACANSG 662

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           S +   +IH  ++K G   D  + NAL+  Y+  G  ++A  VF+  + R+++S+N +I 
Sbjct: 663 SLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIG 722

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G AQ       L LF +M+   I+PD  TFV++ SAC+       G+++   + ++ G +
Sbjct: 723 GCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFG-I 781

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQ 300
              +     ++++  + G ++  E +  TM    +T  W +++      G +   ERA +
Sbjct: 782 TPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAE 841

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
              ++D  +   + A+   Y+  G +  A +L   ME  G+
Sbjct: 842 SSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGV 882



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
           + G  +A+++   ++  G   +    + +L+ C+ +  L  G+ +H+  I++     + +
Sbjct: 119 ITGKDRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTV-LDQY 177

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
              A+I+MY +CGSI+ A  V+ K+    +TV  +N+++ G  Q+G  E ++ + REM+ 
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            GL     T + +L +C     +E G++     +   +   +    C++++ A+ G + E
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 503 AYGLIQSM 510
           A  +   M
Sbjct: 298 AREVFDKM 305


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/713 (38%), Positives = 418/713 (58%), Gaps = 51/713 (7%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLF-----RSRILFSQ 67
            L+    +     Q+H  ++H  L+H      L+        K  LF      S +LFS 
Sbjct: 18  TLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLL-------LKRTLFFRQTHYSFLLFSH 70

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
              PNIF++NTL+ G+  +    E L L+ S+   G+ + + FTFP VL +C R S+ K 
Sbjct: 71  TQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGL-NLHGFTFPLVLKACTRASNRKL 129

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++K G   D+    +L+  YS  G +N+AHKVFE    R +V++  L +GY  
Sbjct: 130 GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTT 189

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   A+ LF+KM +  ++PD++  V + SAC  + D   G+    V +     +  N 
Sbjct: 190 AGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWI--VKHMEEMEMQKNS 247

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            ++T ++N+YAKC                                GK+E+AR +FD M +
Sbjct: 248 FVRTTLVNLYAKC--------------------------------GKMEKARSVFDSMGE 275

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D+V+W+ MI GY+      + +E F +M    + PD+ ++V  L +C  LGALD G+  
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE-W 334

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
               I+   F  N+F+  A+IDMYAKCG++     VF ++ +  K + + N+ ISGLA++
Sbjct: 335 GISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKE--KDIVIMNAAISGLAKN 392

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           G  + S AVF + E +G+ PDG TF+ +LC C H GL+++G +FF ++   Y +K  +EH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGCMVDL  R G LD+AY LI  MP   N+++W ALL+ CRL ++ ++ E   ++L+ LE
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P +  +YV LSN+ + + RW+EA +VR +M+  G++K PG+S+IE  GT+H FLA  KSH
Sbjct: 513 PWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSH 572

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P + +I   L+D+  +++  G+VP T  V FDV++EEKE V+ +HSEKLA+AFGLI++  
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDH 632

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + IR+ KNLR+CGDCH   KL+S+I RREI+VRD  RFH F  G+CSC D+W
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/719 (39%), Positives = 423/719 (58%), Gaps = 17/719 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +++L  L  CKSL    Q+H  I+ + +NH ++S      F+ S        +  LFS I
Sbjct: 16  NTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALN--LFSSI 73

Query: 69  DN-PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
              P   ++N+L+R  SRS  P+  ++ Y  +   G    +  +FP +L + +++S+   
Sbjct: 74  SPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVG-GRFDRISFPPILKAVSKVSALFE 132

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H    K     D F+   L+  Y+  G IN A  VF+    RD+V++NT+I  Y +
Sbjct: 133 GMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCR 192

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A  LF +M+DS + PD      + SAC    + R  +  +  + +N   + +++
Sbjct: 193 FGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHL 252

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           L  TA++ MYA  G M+MA   F  M + ++    ++M+SGY++ G+++ AR +FDQ + 
Sbjct: 253 L--TALVTMYAGAGCMDMAMEFFRKMSV-RNLFVSTAMVSGYSKAGRLDDARVIFDQTEM 309

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +DLV WT MIS Y++     +AL +F +M   GI PD VTM++V+ ACV LG LD  K +
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV 369

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H+ Y         + +  A+I+MYAKCG +D A  VF K+P   + V  ++S+I+  A H
Sbjct: 370 HR-YTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT--RNVVSWSSMINAFAMH 426

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G    S+++F +M+   ++P+ VTFV VL  CSH GLVEEGK+ F SM + Y I P++EH
Sbjct: 427 GEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEH 486

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGCMVDL  R   L EA  +I+SMP   N VIW +L++ACR+H   ++GE+A +++L LE
Sbjct: 487 YGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLE 546

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           PDH    VL+SN+ A  YRW+  R +R +M+   + K  G S I+ NG  H FL   K H
Sbjct: 547 PDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRH 606

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            Q+ EI   L ++  KLK AGYVP+   V+ DV+EEEK+ +V +HSEKLAL FGL+N   
Sbjct: 607 KQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEK 666

Query: 667 KE------TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +E       IRI KNLR+C DCH  FKL+S++Y  EI+VRD  RFH +K G CSC D+W
Sbjct: 667 EEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/606 (42%), Positives = 389/606 (64%), Gaps = 14/606 (2%)

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            +S K    +H  +++ GL+ D ++ N ++ F   FG  N +H++F  +   ++  +NT+
Sbjct: 20  FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+G         ++ ++  M+   + PD+FTF  +  AC  L D ++G + H +V K  G
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK-AG 138

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK------- 294
           C  S+  + T+++++Y KCG ++ A +VF  +   K+ AAW+++ISGY   GK       
Sbjct: 139 CE-SDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISGYIGVGKCREAIDM 196

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
             RA  +FD M ++D+VSW++MI GY+  G   +AL+LF KM + G  PD   MV VL A
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCA 256

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  LGAL+ G         N   G N  L TA+IDMYAKCG +D+A  VF  + K  K +
Sbjct: 257 CARLGALELGNWASNLMDRNEFLG-NPVLGTALIDMYAKCGRMDSAWEVFRGMRK--KDI 313

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            ++N+ ISGLA  G  + +  +F +ME  G++PDG TFV +LCAC+H GLV+EG+Q+F S
Sbjct: 314 VVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNS 373

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   + + P++EHYGCMVDLL R G LDEA+ L++SMP +AN+++W ALL  CRLHR+ +
Sbjct: 374 MERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQ 433

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           + E   ++L+ LEP +  +YVLLSN+ + +++WE+A ++R +M + GI+K PG+S+IE +
Sbjct: 434 LVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVD 493

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
           G +H FL    SHP +++I   L ++   LK++GYVP T  V+FD++EEEKE  +  HSE
Sbjct: 494 GVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSE 553

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGLI++   + IR+ KNLR+CGDCH A K +S    REI+VRD  RFH F  G+C
Sbjct: 554 KLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSC 613

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 614 SCKDYW 619



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 220/489 (44%), Gaps = 84/489 (17%)

Query: 1   MKRLVLEHSSLLA--LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL 58
           M  L+L  S+ +   L +   SLK    +H  ++  GL+        +  F+ +   N  
Sbjct: 1   MSSLILNKSAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFN-FGNTN 59

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
           +  RI F Q   PNIF++NT++ G   +DS QE++ +Y SM  +G+ SP++FTFPF+L +
Sbjct: 60  YSHRI-FHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGL-SPDSFTFPFLLKA 117

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK------------- 165
           CARL   K G ++H  ++K G E D F+  +L+  Y   G+I+NA K             
Sbjct: 118 CARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAW 177

Query: 166 -------------------------VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
                                    VF+G L +D+VS++++I GYA    P  AL LF K
Sbjct: 178 TAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFK 237

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--LGCVGSNMLLKTAVINMYA 258
           M +   +PD +  V +  AC  L    +G     ++ +N  LG    N +L TA+I+MYA
Sbjct: 238 MLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLG----NPVLGTALIDMYA 293

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG M+ A  VF  M   K    W++ ISG    G ++                      
Sbjct: 294 KCGRMDSAWEVFRGM-RKKDIVVWNAAISGLAMSGHVK---------------------- 330

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
                     A  LFG+ME  GI PD  T V +L AC   G +D G++            
Sbjct: 331 ---------AAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLT 381

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             I     ++D+  + G +D A  +   +P     + ++ +++ G   H   +    V +
Sbjct: 382 PEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAI-VWGALLGGCRLHRDTQLVEGVLK 440

Query: 439 EMELMGLKP 447
             +L+ L+P
Sbjct: 441 --QLIALEP 447


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/728 (38%), Positives = 427/728 (58%), Gaps = 73/728 (10%)

Query: 27  IHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           IH Q++ +GL N + + S+LI F  LS   +GL  +  +F  I  PN+ IWNT+ RG++ 
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           S  P  AL LY  M+S G++ PN +TFPF+L SCA+  +F+ G QIH H++K G + DL+
Sbjct: 66  SSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLY 124

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSY--------------------------- 178
           +  +LI  Y   G + +A KVF+ S  RD+VSY                           
Sbjct: 125 VHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKD 184

Query: 179 ----NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
               N +I+GYA+      AL LF++M  + ++PD  T V++ SAC +     +G+Q H+
Sbjct: 185 VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS 244

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            +  +    GSN+ +  A+I++Y KCG                                +
Sbjct: 245 WIDDH--GFGSNLKIVNALIDLYIKCG--------------------------------E 270

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +E A  LF+ +  +D++SW  +I GY+ +  + +AL LF +M   G  P++VTM+++L A
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           C  LGA++ G+ +H  YI   + G     +  T++IDMYAKCG I+ A  VF  I    +
Sbjct: 331 CAHLGAIEIGRWIHV-YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN--R 387

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           ++S +N++I G A HG    +  +F  M    ++PD +TFV +L ACSH G+++ G+  F
Sbjct: 388 SLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIF 447

Query: 473 ESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            SM  +Y I P++EHYGCM+DLL   G   EA  +I +M  + + VIW +LL AC++H N
Sbjct: 448 RSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN 507

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++GE   Q L+ +EP +   YVLLSN+ A   RW E  ++R L++D G++K PG S IE
Sbjct: 508 VELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIE 567

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+ +++EE KE  + +H
Sbjct: 568 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHH 627

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+REI+ RD  RFH F+ G
Sbjct: 628 SEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDG 687

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 688 VCSCNDYW 695


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/605 (40%), Positives = 383/605 (63%), Gaps = 10/605 (1%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L SC  LS  K    IH H+I+    FD+F  + LI        ++ A +VF      +L
Sbjct: 22  LESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
             YN+ I G++  K+P  +   + + + + + PD  T+  +  ACT+     +G Q H  
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           + ++     S++ ++ +++ MY+  G +  A  VF  +       +W+SM++GY + G +
Sbjct: 139 IIRH--GFDSDVYVQNSLVTMYSTLGDIKSASYVFRRIS-CLDVVSWTSMVAGYIKSGDV 195

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
             AR+LFD+M +++LV+W+ MISGY++   F +A+EL+  ++S G+H +E  MV+V+ +C
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASC 255

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LGAL+ G+R H   + N +   N+ L TA++DMYA+CGSID A+ VF ++P   +   
Sbjct: 256 AHLGALELGERAHDYILRNKM-TVNLILGTALVDMYARCGSIDKAIWVFDQLPG--RDAL 312

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++I+G A HG  E ++  F  ME  GL P  +TF  VL ACSHGGLVE G + FESM
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 476 -LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
             +Y I+P++EHYGCMVDLL R G+L EA   +  MP   N+ IW ALL ACR+H+N++I
Sbjct: 373 KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEI 432

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            E AG+ L++L+P+H  +YVLLSN+ A T +WE    +R++M + G+ KPPG++  E +G
Sbjct: 433 AERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDG 492

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H+F    K+HP+ ++IE M +++  K++ AGY  N    +FD+DEEEKE+ +  HSEK
Sbjct: 493 KVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEK 552

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+A+ ++ ++  + IRI KNLR+C DCH A KL+S++Y RE++VRD  RFH FK G CS
Sbjct: 553 LAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACS 612

Query: 715 CMDFW 719
           CMD+W
Sbjct: 613 CMDYW 617



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 192/373 (51%), Gaps = 44/373 (11%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           +++L L++  L + LESC +L     IH  ++ +     + ++S LIS   +S  KN L 
Sbjct: 9   LRKLELKNPKL-SFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLIS---ISINKNLLD 64

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +  +F QI NPN+FI+N+ +RG+S S  P ++   Y      G+V P+N T+PF++ +C
Sbjct: 65  YAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLV-PDNLTYPFLVKAC 123

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            +  S   G Q H  II+ G + D++++N+L+  YS  G I +A  VF      D+VS+ 
Sbjct: 124 TQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWT 183

Query: 180 TLINGYAQVKEPCPALWLFRKM-------------------------------QDSCIQP 208
           +++ GY +  +   A  LF KM                               Q   +  
Sbjct: 184 SMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHA 243

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           +    V++ ++C  L    +G++ H  + +N   V  N++L TA+++MYA+CG ++ A  
Sbjct: 244 NETVMVSVIASCAHLGALELGERAHDYILRNKMTV--NLILGTALVDMYARCGSIDKAIW 301

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVG 324
           VF  +   +   +W+++I+G+   G  E+A + F +M++  L    +++TA++S  S  G
Sbjct: 302 VFDQLP-GRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGG 360

Query: 325 GFSQALELFGKME 337
              + LELF  M+
Sbjct: 361 LVERGLELFESMK 373


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/646 (41%), Positives = 386/646 (59%), Gaps = 39/646 (6%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP-NNFTFPFVLNSCARLSSFKSGCQIHCH 134
           +N LMR +  +  P++AL L+  ML      P +  T    L SC+R+ +   G  +  +
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            +K GL  D F+ ++LIH Y+  G +  A  VF+ +    +V +N ++  Y +  +    
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           + +F+ M +  +  D  T V++ +AC  + D ++GK     V +    +  N  L TA++
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEE--GLARNPKLVTALM 263

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
           +MYAKCG                                +I +AR+LFD M  RD+V+W+
Sbjct: 264 DMYAKCG--------------------------------EIGKARRLFDGMQSRDVVAWS 291

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           AMISGY+Q     +AL LF +M+   + P++VTMV+VL AC  LGAL+ GK +H  Y+  
Sbjct: 292 AMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHS-YVRR 350

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                   L TA++D YAKCG ID A+  F  +P  +K    + ++I G+A +G G  ++
Sbjct: 351 KRLSLTTILGTALVDFYAKCGCIDDAVEAFESMP--VKNSWTWTALIKGMATNGRGREAL 408

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDL 493
            +F  M   G++P  VTF+ VL ACSH  LVEEG++ F+SM  +YGIKP++EHYGCMVDL
Sbjct: 409 ELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDL 468

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           L R G +DEAY  I++MP + N+VIWRALL++C +HRN  IGE A ++++ L P H   Y
Sbjct: 469 LGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDY 528

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLLSN+ A   +W++A  VRK M D GI+K PG S IE +G +  F A    HP+ +EI 
Sbjct: 529 VLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIY 588

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
             +++M  ++K AGYVPNT  V  +V+E EKE  VS+HSEKLA+AFGL+      TIR++
Sbjct: 589 QKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLS 648

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR+C DCH A KL+S++Y REI+VRD   FH FK G CSC D+W
Sbjct: 649 KNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 186/395 (47%), Gaps = 42/395 (10%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S LI  +A  G    +  +R++F   +   + +WN ++  Y ++    E + ++  ML  
Sbjct: 159 SSLIHMYASCG---DVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEV 215

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G V+ +  T   V+ +C R+   K G  +  H+ + GL  +  +  AL+  Y+  G I  
Sbjct: 216 G-VAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGK 274

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F+G  +RD+V+++ +I+GY Q  +   AL LF +MQ + ++P+  T V++ SAC  
Sbjct: 275 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAV 334

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L     GK  H+ V +    +    +L TA+++ YAKCG ++ A   F +M + K++  W
Sbjct: 335 LGALETGKWVHSYVRRKR--LSLTTILGTALVDFYAKCGCIDDAVEAFESMPV-KNSWTW 391

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +++I G    G   R R                            +ALELF  M   GI 
Sbjct: 392 TALIKGMATNG---RGR----------------------------EALELFSSMREAGIE 420

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P +VT + VL AC     ++ G+R       +      +     ++D+  + G +D A  
Sbjct: 421 PTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQ 480

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQH---GLGETSI 434
               +P     V ++ +++S  A H   G+GE ++
Sbjct: 481 FIRTMPIEPNAV-IWRALLSSCAVHRNVGIGEEAL 514



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 168/347 (48%), Gaps = 14/347 (4%)

Query: 4   LVLEHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           +  +  +L++++ +C  +  A     + G +   GL  +    + L+  +A  G    + 
Sbjct: 217 VAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCG---EIG 273

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNS 118
           ++R LF  + + ++  W+ ++ GY+++D  +EAL L++ M L++  V PN+ T   VL++
Sbjct: 274 KARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR--VEPNDVTMVSVLSA 331

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           CA L + ++G  +H ++ +  L     +  AL+ FY+  G I++A + FE    ++  ++
Sbjct: 332 CAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTW 391

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
             LI G A       AL LF  M+++ I+P   TF+ +  AC+       G++    + +
Sbjct: 392 TALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMAR 451

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---YTREGKI 295
           + G +   +     ++++  + GL++ A +   TM +  +   W +++S    +   G  
Sbjct: 452 DYG-IKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIG 510

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           E A +    ++      +  + + Y+  G +  A  +  +M+  GI 
Sbjct: 511 EEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIE 557


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/695 (39%), Positives = 410/695 (58%), Gaps = 45/695 (6%)

Query: 30  QIVHSGLNHHISSSQLISFFALSGCKNGLFR----SRILFSQIDNPNIFIWNTLMRGYSR 85
           QI  S +NHH+     +    L   +   FR    S +LFS    PNIF++N+L+ G+  
Sbjct: 31  QIHVSLINHHLHHDTFLVNLLLK--RTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVN 88

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +    E L L+ S+   G+   + FTFP VL +C R SS K G  +H  ++K G   D+ 
Sbjct: 89  NHLFHETLDLFLSIRKHGLY-LHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVA 147

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
              +L+  YS  G +N+AHK+F+    R +V++  L +GY        A+ LF+KM +  
Sbjct: 148 AMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMG 207

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++PD++  V + SAC  + D   G+    V Y     +  N  ++T ++N+YAKC     
Sbjct: 208 VKPDSYFIVQVLSACVHVGDLDSGEWI--VKYMEEMEMQKNSFVRTTLVNLYAKC----- 260

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
                                      GK+E+AR +FD M ++D+V+W+ MI GY+    
Sbjct: 261 ---------------------------GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSF 293

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             + +ELF +M    + PD+ ++V  L +C  LGALD G+      I+   F  N+F+  
Sbjct: 294 PKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE-WGISLIDRHEFLTNLFMAN 352

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A+IDMYAKCG++     VF ++ +  K + + N+ ISGLA++G  + S AVF + E +G+
Sbjct: 353 ALIDMYAKCGAMARGFEVFKEMKE--KDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI 410

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
            PDG TF+ +LC C H GL+++G +FF ++   Y +K  +EHYGCMVDL  R G LD+AY
Sbjct: 411 SPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAY 470

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
            LI  MP   N+++W ALL+ CRL ++ ++ E   ++L+ LEP +  +YV LSN+ +   
Sbjct: 471 RLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGG 530

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           RW+EA +VR +M+  G++K PG+S+IE  G +H FLA  KSHP + +I   L+D+  +++
Sbjct: 531 RWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMR 590

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
             G+VP T  V FDV+EEEKE V+ YHSEKLA+A GLI++   + IR+ KNLR+CGDCH 
Sbjct: 591 LMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHE 650

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             KL+S+I RREI+VRD  RFH F  G+CSC D+W
Sbjct: 651 VMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/727 (37%), Positives = 422/727 (58%), Gaps = 72/727 (9%)

Query: 28  HGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
           H Q+V +GL N + + S+L+    +S   +GL  +  +F     PN+ IWNT++RG + S
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 87  DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
                 L +Y  M+S G V PN +TFPF+L SCA+  +F+ G QIH  ++K G E D + 
Sbjct: 62  SDLVSPLEMYVRMVSXGHV-PNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ------------------- 187
             +LI  Y+  G + +A KVF+ S  RD+VS   LI GYA                    
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 188 ---------VKEPC---PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
                      E C    AL LF++M  + ++PD  T V++ SAC +     +G++ H +
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           V  + G  GS++ +  A I +Y+KCG                                 +
Sbjct: 241 VDDHHG-FGSSLKIVNAFIGLYSKCG--------------------------------DV 267

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           E A  LF+ +  +D+VSW  +I GY+ +  + +AL LF +M   G  P++VTM++VL AC
Sbjct: 268 EIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327

Query: 356 VGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
             LGA+D G+ +H  YI+  + G      L T++IDMYAKCG I+ A  VF  +    K+
Sbjct: 328 AHLGAIDIGRWIHV-YIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMH--KS 384

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           +S +N++I G A HG    +  +F  M   G++PD +T V +L ACSH GL++ G+  F+
Sbjct: 385 LSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFK 444

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           S+  +Y I P++EHYGCM+DLL   G   EA  +I  MP + + VIW +LL AC++H N 
Sbjct: 445 SVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNL 504

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++ E   QKL+++EP++   YVLLSN+ A   RWE+  ++R++++  G++K PG S IE 
Sbjct: 505 ELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEI 564

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           +  +H F+   K HPQ++EI  ML++M + L+ AG+VP+T +V+ +++EE KE  + +HS
Sbjct: 565 DSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 624

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFGLI+++    + + KNLR+C +CH A KL+S+IY+REI+ RD  RFH F+ G 
Sbjct: 625 EKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGV 684

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 685 CSCCDYW 691


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/660 (40%), Positives = 396/660 (60%), Gaps = 39/660 (5%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           S+++FSQ+  PNIF+WNT++RG    D   +A+ LY SM   G + PNNFT PFVL +CA
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL-PNNFTIPFVLKACA 125

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           R    + G +IH  ++K G + D+F++ +L+  Y      ++A KVF+    +++VS+  
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GY        A+  F+K+ +  ++PD+F+ V + +AC  L D   G+      Y + 
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR--YISD 243

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +G N+ + T++++MY KCG +  A  +FS M   K   +WS+MI GY   G  ++A  
Sbjct: 244 SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMIQGYAFNGLPQQA-- 300

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                        L+LF +M+S  + PD  TMV VL AC  LGA
Sbjct: 301 -----------------------------LDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G       ++   F  N  L TA+IDMY+KCGS+  A  +F  + K  + V  +N++
Sbjct: 332 LDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVV--WNAM 388

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           + GL+ +G  +   ++F  +E  G++PD  TF+ +LC C+HGG V EG+QFF +M   + 
Sbjct: 389 MVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFS 448

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P +EHYGCMVDLL R G L+EA+ LI +MP   N+V+W ALL  C+LH++  + E   
Sbjct: 449 LTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVL 508

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +KL++LEP +  +YV LSN+ +  +RWEEA ++R  M +  IQK    S+IE +G +H F
Sbjct: 509 KKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEF 568

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
           L   KSH  +++I   L ++  +LK+ G+VP T  V+FD++EEEKE  + YHSEKLA+AF
Sbjct: 569 LVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAF 628

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI S     IR+ KNLR+CGDCH A KL+S+I +REI++RD  RFH F  G+CSC D+W
Sbjct: 629 GLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/719 (38%), Positives = 418/719 (58%), Gaps = 47/719 (6%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLF-RSR 62
           L+  +LL    + KS KQ  Q+H  ++   +  N+   +++L +F+A  GC  GL  ++ 
Sbjct: 60  LQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYA--GC--GLMSQAE 115

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           ++F  I   N F+WN ++RGY+ +  P ++LVLY  ML  G    +NFT+PFVL +C  L
Sbjct: 116 VIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFG-QRADNFTYPFVLKACGDL 174

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              + G ++H  ++  GLE D+++ N+L+  Y+ FG +  A  VF+    RDL S+NT+I
Sbjct: 175 LLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMI 234

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +GYA+  +   A  +F  M  + +  D  T + + SAC +L   + GK  H    +N   
Sbjct: 235 SGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRN--S 292

Query: 243 VGS-NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
           +G+ N     ++I MY  C  M                                  AR+L
Sbjct: 293 IGNYNKFFTNSLIEMYCNCNCM--------------------------------VDARRL 320

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F+++  +D VSW +MI GY++ G   ++L LF +M   G  PD+VT +AVL AC  + AL
Sbjct: 321 FERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAAL 380

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
            +G  +H  Y+    F  N  + TA++DMY+KCGS+  +  VF ++P   K++  +++++
Sbjct: 381 RYGMSIHS-YLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPD--KSLVSWSAMV 437

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
           +G   HG G  +I++   M+   + PD   F ++L ACSH GLV EGK+ F  M   Y +
Sbjct: 438 AGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNV 497

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           KP + HY CMVDLL R G LDEAY +I++M     S IW ALL A RLH+N K+ EI+ Q
Sbjct: 498 KPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQ 557

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           K+ D+ P   + Y+ LSN+ A   RW++  +VR ++   G++K PG S+IE +  +HRFL
Sbjct: 558 KVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFL 617

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              KSH QT++I   L ++  +LK AGY P+T  V +DV+EE KE ++  HSE+LA+AF 
Sbjct: 618 VGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFA 677

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LIN+     IRITKNLR+CGDCH   KL+SE+  REI++RD  RFH F KG CSC D+W
Sbjct: 678 LINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/635 (42%), Positives = 396/635 (62%), Gaps = 30/635 (4%)

Query: 106 SPNNFTFPFVL-NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINN 162
           SP     P  L  +C  +   K   QIH   IK G+  +  I+N ++ F     FG +  
Sbjct: 10  SPVTENPPLSLFETCKSMYHLK---QIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCY 66

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F+      + S+N +  GY+++  P   + L+ +M +  ++PD +T+  +F   T 
Sbjct: 67  ARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTR 126

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
               ++G++ H  V K    + SN+    A+INMY+ CGL++MA  +F  M        W
Sbjct: 127 SVALQLGRELHCHVVKY--GLDSNVFAHNALINMYSLCGLIDMARGIFD-MSCKSDVVTW 183

Query: 283 SSMISGYTR-----------------EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           ++MISGY R                  G+++ AR+ F +M +RD VSWTAMI GY ++  
Sbjct: 184 NAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNC 243

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
           + +AL LF +M++  I PDE TMV+VL AC  LGAL+ G+ + + YI+      + F+  
Sbjct: 244 YKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWI-RTYIDKNKVKNDTFVGN 302

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A+IDMY KCG+++ ALS+F  +P+  K    + +++ GLA +G GE ++ +F +M    +
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFT--WTAMVVGLAINGCGEEALNMFSQMLKASV 360

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAY 504
            PD VT+V VL AC+H G+V+EGK+FF SM   +GI+P + HYGCMVDLL + G L EA+
Sbjct: 361 TPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAH 420

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
            +I++MP   NS++W ALL ACR+H++A++ E A +++L+LEP++GA YVL  N+ A   
Sbjct: 421 EIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACN 480

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           +W++ R++R++M D GI+K PG S IE NG +H F+A  +SHPQTKEI   L  MT  LK
Sbjct: 481 KWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLK 540

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
            AGY PNT +V  D+ EE+KE  V  HSEKLA+AFGLINS    TIRI KNLR+C DCH 
Sbjct: 541 IAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHH 600

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             KL+S++Y RE++VRD  RFH F+ G+CSC D+W
Sbjct: 601 VAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/562 (26%), Positives = 250/562 (44%), Gaps = 101/562 (17%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           L+L E+CKS+    QIH + + +G+  +      I  F  S     +  +R LF  I  P
Sbjct: 18  LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEP 77

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++F WN + +GYSR   P+  + LY  ML +  V P+ +T+PF+     R  + + G ++
Sbjct: 78  SVFSWNIMFKGYSRIACPKLGVSLYLEMLERN-VKPDCYTYPFLFKGFTRSVALQLGREL 136

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           HCH++K+GL+ ++F  NALI+ YS+ G I+ A  +F+ S   D+V++N +I+GY ++K+ 
Sbjct: 137 HCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKD 196

Query: 192 C------------------------------------------------PALWLFRKMQD 203
                                                             AL LFR+MQ 
Sbjct: 197 VISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQT 256

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           S I+PD FT V++ +AC +L    +G+     + KN   V ++  +  A+I+MY KCG +
Sbjct: 257 SKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNK--VKNDTFVGNALIDMYFKCGNV 314

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
            MA  +F+T+   +    W++M+ G    G  E A                         
Sbjct: 315 EMALSIFNTLP-QRDKFTWTAMVVGLAINGCGEEA------------------------- 348

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
                 L +F +M    + PDEVT V VL AC   G +D GK+             NI  
Sbjct: 349 ------LNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAH 402

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
              ++D+  K G +  A  +   +P    ++ ++ +++     H   E +       +++
Sbjct: 403 YGCMVDLLGKAGHLKEAHEIIKNMPMKPNSI-VWGALLGACRIHKDAEMAERAIE--QIL 459

Query: 444 GLKP-DGVTFV---TVLCACSHGGLVEEGKQFFESMLNYGIKPQ-----MEHYGCMVDLL 494
            L+P +G  +V    +  AC+    + E +Q    M++ GIK       +E  G + + +
Sbjct: 460 ELEPNNGAVYVLQCNIYAACNKWDKLRELRQV---MMDRGIKKTPGCSLIEMNGIVHEFV 516

Query: 495 ARD---GRLDEAYGLIQSMPYD 513
           A D    +  E YG +  M  D
Sbjct: 517 AGDQSHPQTKEIYGKLNKMTSD 538


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/708 (38%), Positives = 409/708 (57%), Gaps = 72/708 (10%)

Query: 46  ISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
           + F  LS    GL  +  +F  I  PN+ IWNT+ RG++ S  P  AL LY  M+S G++
Sbjct: 1   LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL 60

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
            PN++TFPF+L SCA+L + K G QIH H++K G E DL++  +LI  Y     + +AHK
Sbjct: 61  -PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHK 119

Query: 166 VFEGSLARDLVSYNTLINGYAQ---------------VKEPCP----------------A 194
           VF+ S  RD+VSY  L+ GYA                VK+                   A
Sbjct: 120 VFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEA 179

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L LF++M  + ++PD  T V + SA        +G+Q H+ +  +    GSN+ +  A+I
Sbjct: 180 LELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADH--GFGSNLKIVNALI 237

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
           + Y+KCG M                                E A  LF  +  +D++SW 
Sbjct: 238 DFYSKCGEM--------------------------------ETACGLFLGLSYKDVISWN 265

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
            +I GY+ +  + +AL LF +M   G  P++VTM+++L AC  LGA+D G+ +H  YI+ 
Sbjct: 266 ILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHV-YIDK 324

Query: 375 VVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
            + G      L T++IDMY+KCG I+ A  VF  +    K++  +N++I G A HG    
Sbjct: 325 RLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLH--KSLPAWNAMIFGFAMHGRANA 382

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMV 491
           +  +F  M    +KPD +TFV +L ACSH G+++ G+  F SM  NY I P++EHYGCM+
Sbjct: 383 AFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMI 442

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL   G   EA  +I +M  + + VIW +LL AC++H N ++GE   Q L  +EP++  
Sbjct: 443 DLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPG 502

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
            YVLLSN+ A   RW E  ++R L++D G++K PG S IE +  +H F+   K HP+ +E
Sbjct: 503 SYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 562

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I  ML++M + L+ AG+VP+T +V+ +++EE KE  + +HSEKLA+AFGLI+++ +  + 
Sbjct: 563 IYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLT 622

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I KNLR+C +CH A KL+S+IY+REI+ RD  RFH F+ G CSC D+W
Sbjct: 623 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 151/526 (28%), Positives = 238/526 (45%), Gaps = 112/526 (21%)

Query: 14  LLESC---KSLKQALQIHGQI----------VHSGL------------NHHI----SSSQ 44
           LL+SC   K+ K+ LQIHG +          VH+ L             H +    S   
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 45  LISFFALS---GCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           ++S+ AL      +  +  +R +F +I   ++  WN ++ GY  + + +EAL L+  M+ 
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM- 187

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           K  V P+  T   V+++ AR  S + G Q+H  I   G   +L I NALI FYS  G + 
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEME 247

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A  +F G   +D++S+N LI GY  +     AL LF++M  S   P+  T +++  AC 
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L    IG+  H  + K L  V +   L+T++I+MY+KCG +  A +VF++M + KS  A
Sbjct: 308 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPA 366

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W++MI G+   G   RA   FD                            +F +M    I
Sbjct: 367 WNAMIFGFAMHG---RANAAFD----------------------------IFSRMRKNEI 395

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            PD++T V +L AC   G LD G+ + +    N                           
Sbjct: 396 KPDDITFVGLLSACSHAGMLDLGRHIFRSMTHN--------------------------- 428

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME----LMGLKPDGVTFVTVLC 457
              YKI   L+    +  +I  L   GL       F+E E     M ++PDGV + ++L 
Sbjct: 429 ---YKITPKLEH---YGCMIDLLGHSGL-------FKEAEEMISTMTMEPDGVIWCSLLK 475

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQME-HYGCMVDLLARDGRLDE 502
           AC   G VE G++F +++  + I+P     Y  + ++ A  GR +E
Sbjct: 476 ACKMHGNVELGEKFAQNL--FKIEPNNPGSYVLLSNIYATAGRWNE 519


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/709 (38%), Positives = 431/709 (60%), Gaps = 43/709 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C SL    ++H  ++  G  H +  ++ LI  ++  G      +   +F  +   +
Sbjct: 156 VLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHK---VFVDMPVRD 212

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G+ ++ +  EAL +   M ++  V  +  T   +L  CA+ +    G  +H
Sbjct: 213 VGSWNAMISGFCQNGNVAEALRVLDRMKTEE-VKMDTVTVSSMLPICAQSNDVVGGVLVH 271

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            ++IK GLE D+F+ NALI+ YS FG + +A +VF+G   RDLVS+N++I  Y Q  +P 
Sbjct: 272 LYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPV 331

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL  F++M    ++PD  T V++ S   +L+D RIG+  H  V +    +  ++++  A
Sbjct: 332 TALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVR-CRWLEVDIVIGNA 390

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++NMYAK G                                 I+ AR +F+Q+  RD++S
Sbjct: 391 LVNMYAKLG--------------------------------SIDCARAVFEQLPSRDVIS 418

Query: 313 WTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W  +I+GY+Q G  S+A++ +  ME    I P++ T V++L A   +GAL  G ++H + 
Sbjct: 419 WNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRL 478

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+N +F  ++F+ T +IDMY KCG ++ A+S+FY+IP+  +T   +N+IIS L  HG GE
Sbjct: 479 IKNCLF-LDVFVATCLIDMYGKCGRLEDAMSLFYEIPQ--ETSVPWNAIISSLGIHGHGE 535

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            ++ +F++M   G+K D +TFV++L ACSH GLV+E +  F++M   Y IKP ++HYGCM
Sbjct: 536 KALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCM 595

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDL  R G L++AY L+ +MP  A++ IW  LLAACR+H NA++G  A  +LL+++ ++ 
Sbjct: 596 VDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENV 655

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
            +YVLLSN+ A   +WE A +VR L  D G++K PGWS +     +  F A  +SHPQ  
Sbjct: 656 GYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCA 715

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           EI   L+ +  K+KS GYVP+   V+ DV+E+EKE +++ HSE+LA+ FG+I++  K  I
Sbjct: 716 EIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPI 775

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RI KNLR+CGDCH A K +S+I  REI+VRD+ RFH FK G CSC D+W
Sbjct: 776 RIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/710 (39%), Positives = 420/710 (59%), Gaps = 45/710 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           +L+ CK+ K   Q+H  ++ +   L+  I+ + L S   L    + +  +  +F+ ID P
Sbjct: 27  ILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALL--LPDTIDYALSIFNHIDKP 84

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
               +N ++RG +   SP  AL+L+  M  K  V  + FTF  VL +C+R+ + + G Q+
Sbjct: 85  ESSAYNVMIRGLAFKRSPDNALLLFKKMHEKS-VQHDKFTFSSVLKACSRMKALREGEQV 143

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  I+K G + + F+ N LI  Y+  G I  A  VF+G   R +V++N++++GY +    
Sbjct: 144 HALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLW 203

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF-HAVVYKNLGCVGSNMLLK 250
              + LFRK+ +  I+ D  T +++  AC  L +  IG+     +V K L     N  L 
Sbjct: 204 DEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLR---RNNTLT 260

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           T++I+MYAKC                                G+++ AR+LFD+MD+RD+
Sbjct: 261 TSLIDMYAKC--------------------------------GQVDTARKLFDEMDKRDV 288

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V+W+AMISGY+Q     +AL LF +M+   ++P+EVTMV+VL +C  LGA + GK +H  
Sbjct: 289 VAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF- 347

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           YI+       + L T +ID YAKCG ID ++ VF ++  + K V  + ++I GLA +G G
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEM--SFKNVFTWTALIQGLANNGEG 405

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC 489
           + ++  F  M    +KP+ VTF+ VL ACSH  LV++G+  F SM  ++ I+P++EHYGC
Sbjct: 406 KMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGC 465

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVD+L R G L+EAY  I +MP+  N+V+WR LLA+CR H+N ++ E + + +  LEP H
Sbjct: 466 MVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAH 525

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              Y+LLSN  A   R E+A +VR L+ +  I+K PG S IE +G +H F +    H  +
Sbjct: 526 SGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHS 585

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           KEI   L  M  ++K  GYVPNT     + +EE KET VS+HSEKLA+A+GLI +  + T
Sbjct: 586 KEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTT 645

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRI+KNLR+C DCH A K +S+++ R I+VRD  RFH FK G CSC D+W
Sbjct: 646 IRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 3   RLVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGL 58
           R+  +  +++++L +C    +L+    I   IV  GL  + + ++ LI  +A  G    +
Sbjct: 217 RIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCG---QV 273

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +R LF ++D  ++  W+ ++ GY+++D  +EAL L+  M  KG V PN  T   VL S
Sbjct: 274 DTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEM-QKGNVYPNEVTMVSVLYS 332

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           CA L ++++G  +H +I K  ++  + +   LI FY+  GYI+ + +VF+    +++ ++
Sbjct: 333 CAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTW 392

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
             LI G A   E   AL  F  M ++ ++P+  TF+ + SAC+       G+     + +
Sbjct: 393 TALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRR 452

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           +   +   +     ++++  + G +  A +    M    +   W ++++       IE A
Sbjct: 453 DFD-IEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMA 511

Query: 299 RQLFDQMDQRDLV---SWTAMISGYSQVGGFSQALEL 332
            +  + + + +      +  + + Y+ VG    A+ +
Sbjct: 512 EKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRV 548


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/660 (40%), Positives = 396/660 (60%), Gaps = 39/660 (5%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           S+++FSQ+  PNIF+WNT++RG    D   +A+ LY SM   G + PNNFT PFVL +CA
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL-PNNFTIPFVLKACA 125

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           R    + G +IH  ++K G + D+F++ +L+  Y      ++A KVF+    +++VS+  
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GY        A+  F+K+ +  ++PD+F+ V + +AC  L D   G+      Y + 
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR--YISD 243

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +G N+ + T++++MY KCG +  A  +FS M   K   +WS+MI GY   G  ++A  
Sbjct: 244 SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMIQGYAFNGLPQQA-- 300

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                        L+LF +M+S  + PD  TMV VL AC  LGA
Sbjct: 301 -----------------------------LDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G       ++   F  N  L TA+IDMY+KCGS+  A  +F  + +  + V  +N++
Sbjct: 332 LDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVV--WNAM 388

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           + GL+ +G  +   ++F  +E  G++PD  TF+ +LC C+HGG V EG+QFF +M   + 
Sbjct: 389 MVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFS 448

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P +EHYGCMVDLL R G L+EA+ LI +MP   N+V+W ALL  C+LH++  + E   
Sbjct: 449 LTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVL 508

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +KL++LEP +  +YV LSN+ +  +RWEEA ++R  M +  IQK    S+IE +G +H F
Sbjct: 509 KKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEF 568

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
           L   KSH  +++I   L ++  +LK+ G+VP T  V+FD++EEEKE  + YHSEKLA+AF
Sbjct: 569 LVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAF 628

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI S     IR+ KNLR+CGDCH A KL+S+I +REI++RD  RFH F  G+CSC D+W
Sbjct: 629 GLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/612 (44%), Positives = 387/612 (63%), Gaps = 21/612 (3%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLAR 173
           L+SC  L   K   QIH   I  G+  D F+ + ++ F ++   G I  A  +F      
Sbjct: 42  LSSCKTL---KDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP 98

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ-PDAFTFVAMFSACTELNDPRIGKQF 232
           D+   NTLI  YA    P  A+  + +M +S +  PD  TF  +  AC+E+   R+G+  
Sbjct: 99  DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAI 158

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H+ V+K LG   S + +   ++ MYA CGL+  A  VF         A+W+ MI GY + 
Sbjct: 159 HSHVFK-LGW-SSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG-ASWNIMIGGYLKC 215

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G  + AR++F+ M  RD+VSW+ MI+GY Q   F + L LF  M    I P+E  +V  L
Sbjct: 216 GVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNAL 275

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLT----TAVIDMYAKCGSIDTALSVFYKIP 408
            AC  LGA++ G     Q+IE  +  +N+ LT    TA+IDMY+KCGS++ AL VF+K+ 
Sbjct: 276 SACAHLGAMEQG-----QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK 330

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  K V  ++++I+GLA +G G+ ++ +F +ME+ G+KP+ VTF+ +L ACSH  LV+EG
Sbjct: 331 E--KNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEG 388

Query: 469 KQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
             FF SM + YG+KP   H+ CMVDL  R G LD+A  +I+SMP+  NS IW ALL ACR
Sbjct: 389 CSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACR 448

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           +H + ++GE  G++LL+L+P+HG  YVLLSN+ A   RW+   ++R++M +  + K PG 
Sbjct: 449 IHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGC 508

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV 647
           S+I+   T+H F+A   SHPQ + I   L +M+ +LK+AGY P+T QV+ D+DEEEKET 
Sbjct: 509 SFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETA 568

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           + +HSEKLA+AFGLI +    TIRITKNLR+C DCH A KL+S+IY REI+VRD  RFH 
Sbjct: 569 LCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHH 628

Query: 708 FKKGNCSCMDFW 719
           F+ G+CSCMDFW
Sbjct: 629 FRDGSCSCMDFW 640



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 221/493 (44%), Gaps = 74/493 (15%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L  L SCK+LK   QIH Q + +G+ + +  +S+++SF ALS     +  +R LF +I 
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSP-HGSIPYARFLFYRIR 96

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            P+IFI NTL+R Y+ S +P +A+V Y+ M    +V P+  TFP +L +C+ + S + G 
Sbjct: 97  KPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGE 156

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYS--------------------------IFGYI--- 160
            IH H+ K G   ++ + N L+  Y+                          I GY+   
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG 216

Query: 161 --NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
              +A ++FE    RD+VS++ +INGY Q       L LF+ M    I+P+    V   S
Sbjct: 217 VFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALS 276

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC  L     G+      Y     V   + L TA+I+MY+KCG +  A  VF  M   K+
Sbjct: 277 ACAHLGAMEQGQWIER--YMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKN 333

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             AWS+MI+G    G+ + A                               L LF +ME 
Sbjct: 334 VLAWSAMINGLAINGQGKDA-------------------------------LNLFSQMEM 362

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+ P+EVT + +L AC     +D G               N      ++D+Y + G +D
Sbjct: 363 QGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLD 422

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG----VTFVT 454
            A +V   +P    + +++ ++++    HG  E    V +   L+ L P+     V    
Sbjct: 423 QAQTVIKSMPFKPNS-AIWGALLNACRIHGDTELGEQVGK--RLLELDPNHGGRYVLLSN 479

Query: 455 VLCACSHGGLVEE 467
           +  AC     V E
Sbjct: 480 IYAACGRWDRVAE 492


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/611 (42%), Positives = 388/611 (63%), Gaps = 14/611 (2%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF----YSIFGYINNAHKVFEG 169
           F L +C+ L+  K    IH ++I+  +  D+F  + LI F     S    I+ A ++F  
Sbjct: 22  FSLETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQ 78

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
               +L  +N +I G++  K P  A   + + Q   + PD  TF  +  +CT+L+   +G
Sbjct: 79  IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMG 138

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
            Q H  + K+      ++ ++ ++++MYA  G    A  +F  M       +W+SMI G+
Sbjct: 139 SQAHGHIIKH--GFEKDVYVQNSLVHMYATFGDTEAATLIFQRM-YYVDVVSWTSMIRGF 195

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            + G +E AR+LFDQM +++LV+W+ MISGY+Q   F +A+ELF  ++S G+  +E  MV
Sbjct: 196 NKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMV 255

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +V+ +C  LGAL+ G+R H   ++N +   N+ L TA++DMYA+CGSID A+ VF  +P+
Sbjct: 256 SVISSCAHLGALELGERAHDYVVKNGM-TLNLILGTALVDMYARCGSIDKAVWVFEDLPE 314

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
              T+S + ++I+GLA HG  E S+  F  M   GL P  +TF  VL ACSHGGLVE G 
Sbjct: 315 R-DTLS-WTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGF 372

Query: 470 QFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           Q FESM  ++ ++P++EHYGCMVDLL R G+L+EA   +  MP   N+ +W ALL ACR+
Sbjct: 373 QIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRI 432

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H+NA+IGE  G+ L+ L P H  +YVLLSN+ A    WE+  ++R++M   G++KPPG S
Sbjct: 433 HKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHS 492

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE +G +H+F     SHP+  +IE M +++ M++++AGY  NT   +FD+DEEEKE+ +
Sbjct: 493 LIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESAL 552

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLA+AFG++ S +   IRI KNLR+C DCH A KL+S+++ RE++VRD  RFH F
Sbjct: 553 HRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHF 612

Query: 709 KKGNCSCMDFW 719
           ++G CSCMD+W
Sbjct: 613 RQGLCSCMDYW 623



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 217/441 (49%), Gaps = 71/441 (16%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGL-- 58
           K L L++  L +L E+C  L     IH  ++ + +   + ++S+LI+F         L  
Sbjct: 12  KTLRLKNPKLFSL-ETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLID 70

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
           + SRI FSQI NPN+FI+N ++RG+S S +P +A   Y     +G++ P+N TFPF++ S
Sbjct: 71  YASRI-FSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLL-PDNLTFPFLVKS 128

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG-------------YIN---- 161
           C +L     G Q H HIIK G E D++++N+L+H Y+ FG             Y++    
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 162 --------------NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
                         +A K+F+    ++LV+++T+I+GYAQ      A+ LF+ +Q   ++
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
            +    V++ S+C  L    +G++ H  V KN   +  N++L TA+++MYA+CG ++ A 
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKN--GMTLNLILGTALVDMYARCGSIDKAV 306

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
            VF  +   + T +W+++I+G    G  ER                              
Sbjct: 307 WVFEDLP-ERDTLSWTALIAGLAMHGYSER------------------------------ 335

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
            +L+ F  M   G+ P ++T  AVL AC   G ++ G ++ +    +      +     +
Sbjct: 336 -SLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCM 394

Query: 388 IDMYAKCGSIDTALSVFYKIP 408
           +D+  + G ++ A     K+P
Sbjct: 395 VDLLGRAGKLEEAERFVLKMP 415


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/767 (38%), Positives = 442/767 (57%), Gaps = 68/767 (8%)

Query: 15  LESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           L +C +LKQ  +I  Q++ +G ++   ++S+L+ F   S    GL  S  +F +I+N N 
Sbjct: 48  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFI-GLDYSLQIFDRIENSNG 106

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-RLSSFKSGCQIH 132
           F+WNT+MR Y +S+S ++AL+LY  M+ K  V P+N+T+P V+ +CA RL  F  G +IH
Sbjct: 107 FMWNTMMRAYIQSNSAEKALLLYKLMV-KNNVGPDNYTYPLVVQACAVRLLEF-GGKEIH 164

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            H++K G + D++++N LI+ Y++ G + +A K+F+ S   D VS+N+++ GY +  +  
Sbjct: 165 DHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVE 224

Query: 193 PALWLFRKMQDSCIQPDAFTFVAM------FSACTELN--DPRIGKQFHAVV--YKNLGC 242
            A  +F +M    I       V +        A    N  D +    + A++  Y+  G 
Sbjct: 225 EAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGM 284

Query: 243 VGSNMLL------------KTAVINMYAKCGLMN------MAERVFSTMGMSKSTAAWSS 284
               +++            +  V+++ + C  ++      M   +   MG+       ++
Sbjct: 285 YEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNA 344

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAM---------------------------- 316
           +I  Y+  G+I  A++LF+     D +SW +M                            
Sbjct: 345 LIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSW 404

Query: 317 ---ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
              ISGY+Q   FS+ L LF +M+   I PDE  +V+V+ AC  L ALD GK +H  YI 
Sbjct: 405 SAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVH-AYIR 463

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
                 N+ L T ++DMY KCG ++ AL VF  + +  K VS +N++I GLA +GL E S
Sbjct: 464 KNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEE--KGVSSWNALIIGLAVNGLVERS 521

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVD 492
           + +F EM+  G+ P+ +TF+ VL AC H GLV+EG+  F SM+  +GI+P ++HYGCMVD
Sbjct: 522 LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 581

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R G L+EA  LI+SMP   +   W ALL AC+ H + ++GE  G+KL++L+PDH   
Sbjct: 582 LLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGF 641

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           +VLLSN+ A    WE+  +VR +M   G+ K PG S IE NG +H FLA  K+HP   ++
Sbjct: 642 HVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKV 701

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
           E ML +M  +LK  GY P+T +V  D+DEEEKET +  HSEKLA+AFGL+       IRI
Sbjct: 702 EGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRI 761

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLRIC DCH A KL+S+ Y REI+VRD  RFH FK+G CSCMD+W
Sbjct: 762 MKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/712 (38%), Positives = 420/712 (58%), Gaps = 74/712 (10%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S+L+ F  LS   +G   +  +F+ I  PN  IWNT++RGY+ S  P  AL LY  M+S 
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G++ PN++TFPF+L SCA+  +F+ G QIH H++K G E DL++  +LI  Y+  G + +
Sbjct: 61  GLL-PNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLED 119

Query: 163 AHKVFEGSLARDLVSY-------------------------------NTLINGYAQVKEP 191
           AHKVF+ S  RD+VSY                               N +I+GYA+    
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL LF++M  + ++PD  T V + SAC +     +G+Q H+ +  +    GSN+ +  
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDH--GFGSNLKIVN 237

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+I++Y+KCG                                ++E A  LF+ +  +D+V
Sbjct: 238 ALIDLYSKCG--------------------------------QVETACGLFEGLSCKDVV 265

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH--- 368
           SW  +I GY+ +  + +AL LF +M   G  P++VT+V++L AC  LGA+D G+ +H   
Sbjct: 266 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYI 325

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            + +++V    +  L T++IDMYAKCG I+ A  VF  +    K++S +N++I G A HG
Sbjct: 326 DKKLKDVTNAPS--LRTSLIDMYAKCGDIEAAHQVFNSMLH--KSLSSWNAMIFGFAMHG 381

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHY 487
                  +F  M   G++PD +TFV +L ACSH G ++ G+  F+SM  +Y I P++EHY
Sbjct: 382 RANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHY 441

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCM+DLL   G   EA  +I++MP + + VIW +LL ACR H N ++ E   + L+ +EP
Sbjct: 442 GCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEP 501

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           ++   YVLLSN+ A    W+E  +VR L++  G++K PG S IE +  +H F+   K HP
Sbjct: 502 ENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHP 561

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           + +EI  ML++M   L+ AG+VP+T +V+ +++EE KE  + +HSEKLA+AFGLI+++  
Sbjct: 562 RNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 621

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             + I KNLR+C +CH A KL+S+IY+REI+ RD  RFH F+ G CSC DFW
Sbjct: 622 TKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/718 (37%), Positives = 431/718 (60%), Gaps = 50/718 (6%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNG-LFRSRIL 64
           ++ +  ++L++C+++    +IH   +  G    +  ++ LI  +    C+ G +  +RIL
Sbjct: 152 DYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLY----CRYGAVVNARIL 207

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++   ++  WN ++ GY +S + +EAL L     S G+ + ++ T   +L++C     
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGD 262

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
           F  G  IH + IK GLE +LF+ N LI  Y+ FG + +  KVF+    RDL+S+N++I  
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKA 322

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y   ++P  A+ LF++M+ S IQPD  T +++ S  ++L + R  +       +  G   
Sbjct: 323 YELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRK-GWFL 381

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ +  AV+ MYAK GL                                ++ AR +F+ 
Sbjct: 382 EDITIGNAVVVMYAKLGL--------------------------------VDSARAVFNW 409

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG--IHPDEVTMVAVLRACVGLGALD 362
           +  +D++SW  +ISGY+Q G  S+A+E++  ME  G  I  ++ T V+VL AC   GAL 
Sbjct: 410 LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALR 469

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G +LH + ++N ++  ++F+ T++ DMY KCG +D ALS+FY+IP+ + +V  +N++I+
Sbjct: 470 QGMKLHGRLLKNGLY-LDVFVGTSLADMYGKCGRLDDALSLFYQIPR-VNSVP-WNTLIA 526

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
               HG GE ++ +F+EM   G+KPD +TFVT+L ACSH GLV+EG+  FE M  +YGI 
Sbjct: 527 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGIT 586

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P ++HYGCMVDL  R G+L+ A   I+SMP   ++ IW ALL+ACR+H N  +G+IA + 
Sbjct: 587 PSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEH 646

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L ++EP+H  ++VLLSNM A   +WE   ++R +    G++K PGWS +E +  +  F  
Sbjct: 647 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYT 706

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             ++HP  +E+   L  +  KLK  GYVP+   V+ DV+++EKE ++  HSE+LA+AF L
Sbjct: 707 GNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFAL 766

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I + +K TIRI KNLR+CGDCH   K +S+I  REI+VRD+ RFH FK G CSC D+W
Sbjct: 767 ITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 155/551 (28%), Positives = 273/551 (49%), Gaps = 54/551 (9%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNP 71
            L   C +L+ A  +H ++V S    ++  S++L++ +   G    +  +R  F  I N 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLG---NVALARYTFDHIHNR 115

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYT-SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           +++ WN ++ GY R+    E +  ++  MLS G+  P+  TFP VL +C  ++    G +
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGL-QPDYRTFPSVLKACRNVT---DGNK 171

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IHC  +KFG  +D+++  +LIH Y  +G + NA  +F+    RD+ S+N +I+GY Q   
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGN 231

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL     + D     D+ T V++ SACTE  D   G   H+   K+   + S + + 
Sbjct: 232 AKEAL----TLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKH--GLESELFVS 285

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             +I++YA+ G +   ++VF  M + +   +W+S+I  Y              +++++ L
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYV-RDLISWNSIIKAY--------------ELNEQPL 330

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                            +A+ LF +M    I PD +T++++      LG +   + +   
Sbjct: 331 -----------------RAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGF 373

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            +    F  +I +  AV+ MYAK G +D+A +VF  +P   K V  +N+IISG AQ+G  
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPN--KDVISWNTIISGYAQNGFA 431

Query: 431 ETSIAVFREMELMG--LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
             +I ++  ME  G  +  +  T+V+VL ACS  G + +G +    +L  G+   +    
Sbjct: 432 SEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGT 491

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LE 546
            + D+  + GRLD+A  L   +P   NSV W  L+A    H + +   +  +++LD  ++
Sbjct: 492 SLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVK 550

Query: 547 PDHGAHYVLLS 557
           PDH     LLS
Sbjct: 551 PDHITFVTLLS 561


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/691 (38%), Positives = 410/691 (59%), Gaps = 39/691 (5%)

Query: 31  IVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQ 90
           +V +G  HH  S   +    LS    G+  +  +F+     ++  WN+++R +  S+ P+
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 91  EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
            AL  YT ML +    P+ FTFP +L  CA L  FK G  +H  ++K+ L  DL+I   L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           ++ Y+  G + +A  +FE    R+ V + ++I+GY +   P  AL L++KM++    PD 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T   + SAC EL D  +G + H+ + +    + +  +L +A++NMYAKCG         
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICA--VLGSALVNMYAKCG--------- 229

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                   ++ ARQ+FD++  +D+ +W+A+I GY +    ++AL
Sbjct: 230 -----------------------DLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEAL 266

Query: 331 ELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           +LF ++     + P+EVT++AV+ AC  LG L+ G+ +H  YI     G ++ L  ++ID
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHD-YITRTQKGHSVSLNNSLID 325

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           M++KCG ID A  +F  +  + K +  +NS+++G A HGLG  ++A FR M+   L+PD 
Sbjct: 326 MFSKCGDIDAAKRIFDSM--SYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDE 383

Query: 450 VTFVTVLCACSHGGLVEEGKQ-FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
           +TF+ VL ACSH GLV+EGK+ F+E    YG++ + EHYGCMVDLL R G L EA   I+
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIR 443

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
            MP   +  IW ++L ACR++ N ++GE A + LL LEP +   Y+LLSN+ A+   W E
Sbjct: 444 VMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNE 503

Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
            ++VR+LM++ GIQK PG S +  +   H FLA   SHP+  EI +ML+ +  KLK AGY
Sbjct: 504 VKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGY 563

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
           V +T +V+ ++D+ +KE  VS HSEKLAL +GL+ S     I I KNLR+C DCH   KL
Sbjct: 564 VADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKL 623

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S+IY+R+I +RD  RFH FK G+CSC D+W
Sbjct: 624 VSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 418/708 (59%), Gaps = 42/708 (5%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFSQIDNP 71
           +LL+     +   QIH Q+V SGL   + S  L++ F  +    G +  +R +F +   P
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGL---VESGFLVTKFVNASWNIGEIGYARKVFDEFPEP 132

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++F+WN ++RGYS  +   +A+ +Y+ M + G V+P+ FT P VL +C+ +   + G ++
Sbjct: 133 SVFLWNAIIRGYSSHNFFGDAIEMYSRMQASG-VNPDGFTLPCVLKACSGVPVLEVGKRV 191

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  I + G E D+F++N L+  Y+  G +  A  VFEG   R++VS+ ++I+GY Q   P
Sbjct: 192 HGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLP 251

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL +F +M+   ++PD    V++  A T++ D   GK  H  V K +G      LL  
Sbjct: 252 MEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVK-MGLEFEPDLL-I 309

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           ++  MYAKCG                                ++  AR  FDQM+  +++
Sbjct: 310 SLTAMYAKCG--------------------------------QVMVARSFFDQMEIPNVM 337

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
            W AMISGY++ G  ++A+ LF +M S  I  D +T+ + + AC  +G+LD  K +   Y
Sbjct: 338 MWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWM-GDY 396

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I    +  ++F+ TA+IDM+AKCGS+D A  VF +     K V +++++I G   HG G+
Sbjct: 397 INKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD--KDVVVWSAMIVGYGLHGRGQ 454

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            +I +F  M+  G+ P+ VTFV +L AC+H GLVEEG + F SM  YGI+ + +HY C+V
Sbjct: 455 DAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVV 514

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G L+EAY  I +MP +    +W ALL AC+++R+  +GE A ++L  L+P +  
Sbjct: 515 DLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTG 574

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
           HYV LSN+ A +  W+   +VR LM + G+ K  G+S IE NG L  F    KSHP+ KE
Sbjct: 575 HYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKE 634

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L+ +  +LK AG++P+   V+ D+++EEKE  +  HSE+LA+A+GLI++    T+R
Sbjct: 635 IFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLR 694

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ITKNLR C +CH A KL+S++  REI+VRDA RFH FK G CSC D+W
Sbjct: 695 ITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/624 (41%), Positives = 392/624 (62%), Gaps = 9/624 (1%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +  L+LLE CKS+ Q  QI  Q+V +GL     +SS+LI+F A+S  ++  + + ILF+ 
Sbjct: 7   NPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNT 66

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             NPN F WN  +RG+  S++P+EA+VLY  +L      P+N+T+P +  +CARLS  + 
Sbjct: 67  -RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRM 125

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +I  H++  G + D+F+ NA+IH     G ++ A K+F+ S  RDLVS+N++INGY +
Sbjct: 126 GSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVR 185

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL  +R+M+   I+PD  T + + S+C +L D  +G++ H  + +N   +   +
Sbjct: 186 RGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEEN--GLKLTV 243

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            L  A+++MY KCG +  A ++F +M  +K+  +W++M+ GY + G ++ A +LFD+M  
Sbjct: 244 PLANALMDMYMKCGNLESARKLFDSM-TNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPD 302

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D+V W AMI GY       +AL LF +M+++ I+PDEVTMV+ L AC  LGALD G  +
Sbjct: 303 KDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWI 362

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  YIE      N+ L TA+IDMYAKCG I  A+ VF ++P   +    + +IISGLA H
Sbjct: 363 HH-YIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG--RNSLTWTAIISGLALH 419

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G    +IA F EM    + PD VTF+ +L AC HGGLVEEG+++F  M + + + P+++H
Sbjct: 420 GNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKH 479

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMVDLL R G L+EA  LI+SMP +A++V+W AL  ACR+H N  +GE A  KLL ++
Sbjct: 480 YSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD 539

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P     YVLL+NM  E   W+EA + RKLM   G++K PG S IE NG ++ F+   KSH
Sbjct: 540 PHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSH 599

Query: 607 PQTKEIELMLKDMTMKLKSAGYVP 630
           PQ+++I   L  +T +L+     P
Sbjct: 600 PQSEQIYECLIQLTRQLELVECTP 623


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/716 (37%), Positives = 410/716 (57%), Gaps = 49/716 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFSQ---- 67
           LL+ C SL     IH  +   G   H     ++LI  ++  G    L  +R LF      
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLG---DLHSARTLFDHRHHH 87

Query: 68  ----IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
                  PN F+ NT++R Y+ +    EA+ LY  M   G V  NNFT+PFVL  CA   
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG-VGVNNFTYPFVLKVCASEL 146

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G  +H  +++ G   DLF+  AL+  Y+  G I +AH+VF+  L RD+V +  +I 
Sbjct: 147 GAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMIT 206

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            Y Q + P  AL LFRKMQ+     D  T +++ SA  +L D R+    H     N G +
Sbjct: 207 LYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLN-GFI 265

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G ++ +  +++ MYAKCG                                 +ERAR +FD
Sbjct: 266 G-DVSVGNSIVGMYAKCG--------------------------------NVERARLVFD 292

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M++R+ +SW +M+SGY+Q G  + AL LF +M++    P+ VT + ++ AC  LG+   
Sbjct: 293 RMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL 352

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G++LH  ++ +     +  L  A++DMY KCG +DTA+ +F       + VS +N +ISG
Sbjct: 353 GRKLHN-FVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 411

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
              HG G+ ++ +F  M++ G++P+ +TF ++L ACSH GL++EG++ F  M    ++P+
Sbjct: 412 YGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPE 471

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           M+HY CMVD+L R G L+EA+ LI+ +P   +  +W ALL ACR+H N ++GEIA   L 
Sbjct: 472 MKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLF 531

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            LEP+H  +YVL+SN+ A + +W+E   VR+ M   G++KP  +S IE    +H F  + 
Sbjct: 532 QLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTAD 591

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +S P  +E+   ++ + +++K  GYVP+   V+ DV+ E+KE +++YHSEKLA+AFG++ 
Sbjct: 592 QSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMK 651

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                 I++TKNLR+C DCH AFK +S IY R+I+VRD  RFH F+ G CSC D+W
Sbjct: 652 MDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/691 (38%), Positives = 409/691 (59%), Gaps = 39/691 (5%)

Query: 31  IVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQ 90
           +V +G  HH  S   +    LS    G+  +  +F+     ++  WN+++R +  S+ P+
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60

Query: 91  EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
            AL  YT ML +    P+ FTFP +L  CA L  FK G  +H  ++K+ L  DL+I   L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           ++ Y+  G + +A  +FE    R+ V + ++I+GY +   P  AL L++KM++    PD 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T   + SAC EL D  +G + H+ + +    + +  +L +A++NMYAKCG         
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICA--VLGSALVNMYAKCG--------- 229

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                   ++ ARQ+FDQ+  +D+ +W+A+I GY +    ++AL
Sbjct: 230 -----------------------DLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEAL 266

Query: 331 ELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           +LF ++     + P+EVT++AV+ AC  LG L+ G+ +H  YI     G ++ L  ++ID
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHD-YITRTQKGHSVSLNNSLID 325

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           M++KCG ID A  +F  +  + K +  +NS+++GLA HGLG  ++A F  M+   L+PD 
Sbjct: 326 MFSKCGDIDAAKRIFDSM--SYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDE 383

Query: 450 VTFVTVLCACSHGGLVEEGKQ-FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
           +TF+ VL ACSH GLV+EGK+ F+E    YG++ + EHYGCMVDLL R G L EA   I+
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIR 443

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
            MP   +  IW ++L ACR++ N ++GE A + LL+LEP +   Y+LLSN+ A    W E
Sbjct: 444 VMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNE 503

Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
            ++VR+LM++ GIQK PG S +  +   H FLA   SHP+  EI +ML+ +  KLK  GY
Sbjct: 504 VKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGY 563

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
           V +T +V+ ++D+ +KE  VS HSEKLAL +GL+ S     I I KNLR+C DCH   KL
Sbjct: 564 VADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKL 623

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S+IY+R+I +RD  RFH FK G+CSC D+W
Sbjct: 624 VSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 426/708 (60%), Gaps = 42/708 (5%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C++L    +IH  +   G    +  ++ LI  ++  G   G+ RS  LF  +   +
Sbjct: 181 VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFV-GIARS--LFDDMPFRD 237

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G  ++ +  +AL +   M  +GI + ++ T   +L  CA+L    +   IH
Sbjct: 238 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-NMDSVTVASILPVCAQLGDISTATLIH 296

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            ++IK GLEF+LF+ NALI+ Y+ FG + +A KVF+    RD+VS+N++I  Y Q  +P 
Sbjct: 297 LYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPV 356

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A   F KMQ + ++PD  T V++ S   +  D +  +  H  + +  G +   +++  A
Sbjct: 357 TARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRR-GWLMEAVVIGNA 415

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           V++MYAK G+                                I+ A ++F+ +  +D+VS
Sbjct: 416 VMDMYAKLGV--------------------------------IDSAHKVFNLIPVKDVVS 443

Query: 313 WTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W  +ISGY+Q G  S+A+E++  ME    I  ++ T V++L A   +GAL  G R+H   
Sbjct: 444 WNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHL 503

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+  +   ++F+ T +ID+Y KCG +  A+ +FY++P+  ++   +N+IIS    HG GE
Sbjct: 504 IKTNLH-LDVFVGTCLIDLYGKCGRLVDAMCLFYQVPR--ESSVPWNAIISCHGIHGHGE 560

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ +FREM+  G+KPD VTF+++L ACSH GLV+EGK FF  M  YGIKP ++HYGCMV
Sbjct: 561 KALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMV 620

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G L+ AY  I+ MP   ++ IW ALL ACR+H N ++G+ A  +L +++ ++  
Sbjct: 621 DLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVG 680

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
           +YVLLSN+ A   +WE   +VR L  + G++K PGWS IE N  +  F    +SHP+ KE
Sbjct: 681 YYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKE 740

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L+ +T K+KS GY+P+   V+ DV+E+EKE +++ HSE+LA+AFG+I++  K  IR
Sbjct: 741 IYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIR 800

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I KNLR+CGDCH A K +S I  REI+VRD+ RFH FK G CSC D+W
Sbjct: 801 IFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 163/578 (28%), Positives = 286/578 (49%), Gaps = 53/578 (9%)

Query: 13  ALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           +L +SC     A ++H  +V SG +  +  S +L++ +A  G    +  SR  F QI   
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLG---DVSLSRGTFDQIQRK 137

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           +++ WN+++  Y R+   +EA+  +  +L       + +TFP VL +C  L     G +I
Sbjct: 138 DVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV---DGRKI 194

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           HC + K G ++D+F+  +LIH YS FG++  A  +F+    RD+ S+N +I+G  Q    
Sbjct: 195 HCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNA 254

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL +  +M+   I  D+ T  ++   C +L D       H  V K+   +   + +  
Sbjct: 255 AQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKH--GLEFELFVSN 312

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+INMYAK G +  A++VF  M + +   +W+S+I+ Y +      AR            
Sbjct: 313 ALINMYAKFGNLGDAQKVFQQMFL-RDVVSWNSIIAAYEQNDDPVTAR------------ 359

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF--GKRLHQ 369
                        GF      F KM+  G+ PD +T+V++  A +   + D+   + +H 
Sbjct: 360 -------------GF------FFKMQLNGLEPDLLTLVSL--ASIAAQSRDYKNSRSVHG 398

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             +        + +  AV+DMYAK G ID+A  VF  IP  +K V  +N++ISG  Q+GL
Sbjct: 399 FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIP--VKDVVSWNTLISGYTQNGL 456

Query: 430 GETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
              +I V+R M E   +K +  T+V++L A +H G +++G +    ++   +   +    
Sbjct: 457 ASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGT 516

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LE 546
           C++DL  + GRL +A  L   +P ++ SV W A+++   +H + +      +++ D  ++
Sbjct: 517 CLIDLYGKCGRLVDAMCLFYQVPRES-SVPWNAIISCHGIHGHGEKALKLFREMQDEGVK 575

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           PDH     LLS   + +   +E +    LM + GI KP
Sbjct: 576 PDHVTFISLLS-ACSHSGLVDEGKWFFHLMQEYGI-KP 611


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/744 (37%), Positives = 432/744 (58%), Gaps = 52/744 (6%)

Query: 19  KSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNG----LFRSRILFSQIDNPN 72
           ++++QA ++H ++  SG  L H  S+  L++  +L  C       L  +  LF ++  P+
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLN--SLVNCLEPHPLHLRYALHLFDRMP-PS 66

Query: 73  IFIWNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLN---SCARLSSFKSG 128
            F+++T +R  SR+ S P    +L+  M   G V P+ FTF F+     S +R  S    
Sbjct: 67  TFLFDTALRACSRAGSDPHRPFLLFRRMRRAG-VRPDGFTFHFLFKCSSSSSRPHSLLLC 125

Query: 129 CQIHCHIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFE------------------- 168
             +H   ++  L     F+ N+LIH Y   G   +A + F+                   
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAK 185

Query: 169 -GSL-----------ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G L            RD++S+ +LI  Y++      A+  F+ M    I PD  T +A+
Sbjct: 186 MGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAV 245

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC +L D  +G+  H +V +       N+++  A+I+MYAKCG    A++VF  +G  
Sbjct: 246 LSACAKLKDLELGRSLHLLVEEKGMPTSENLVV--ALIDMYAKCGDFGHAQQVFDALGRG 303

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
               +W+++I GY + G ++ AR LFD+M+ RD++++ +M++GY   G   +AL LF  M
Sbjct: 304 PRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSM 363

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
               +  D  T+V +L AC  LGAL  G+ LH   IE  +   +I+L TA++DMY KCG 
Sbjct: 364 RRHDLRVDNFTVVNLLTACASLGALQQGRALHA-CIEQRLVEADIYLGTALLDMYMKCGR 422

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +D A  VF ++ K  + V  + ++I+GLA +G+G+ ++  F +M   G +P+ V+++ VL
Sbjct: 423 VDEATIVFQRMGK--RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVL 480

Query: 457 CACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSH  L+ EG+ +F+ M + Y I PQ+EHYGCM+DLL R G LDEA  L+++MP   N
Sbjct: 481 TACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPN 540

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
           +VIW ++L+ACR+H++  + + A + LL LEPD    YV L N+  ++ +WE A ++R L
Sbjct: 541 AVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRML 600

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           M++  ++K  G+S I   G +H+F+ S KSHP+  EI  ML++++ +LKS GY P T Q+
Sbjct: 601 MEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQI 660

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
             DVDEEEKE  +  HSEKLA+AFGLIN      + I KNLR+C DCH A KL+S ++ R
Sbjct: 661 TVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNR 720

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           EI+VRD  RFH F++G CSC DFW
Sbjct: 721 EIIVRDRSRFHHFREGTCSCNDFW 744


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/715 (37%), Positives = 422/715 (59%), Gaps = 13/715 (1%)

Query: 10   SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
            S+L        + +  ++HG +V + LN  I   S L+  ++  G    +  +  +F  +
Sbjct: 382  SILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM---VEEAHQVFRSL 438

Query: 69   DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
               N   +N L+ GY +    +EAL LY  M S+  + P+ FTF  +L  CA   +   G
Sbjct: 439  LERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQG 498

Query: 129  CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             QIH H+I+  +  ++ +   L+H YS  G +N A ++F     R+  S+N++I GY Q 
Sbjct: 499  RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 558

Query: 189  KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             E   AL LF++MQ + I+PD F+  +M S+C  L+D + G++ H  + +N   +    +
Sbjct: 559  GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN--TMEEEGI 616

Query: 249  LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
            L+  +++MYAKCG M+ A +V+    + K     + M+S +   G+   A+ LFDQM+QR
Sbjct: 617  LQVVLVDMYAKCGSMDYAWKVYDQT-IKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQR 675

Query: 309  DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
            +   W ++++GY+  G   ++   F +M    I  D +TMV ++  C  L AL+ G +LH
Sbjct: 676  NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLH 735

Query: 369  QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
               I+      ++ L TA++DMY+KCG+I  A +VF  +  N K +  +N++ISG ++HG
Sbjct: 736  SLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNM--NGKNIVSWNAMISGYSKHG 793

Query: 429  LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHY 487
              + ++ ++ EM   G+ P+ VTF+ +L ACSH GLVEEG + F SM  +Y I+ + EHY
Sbjct: 794  CSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHY 853

Query: 488  GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
             CMVDLL R GRL++A   ++ MP +     W ALL ACR+H++  +G +A Q+L +L+P
Sbjct: 854  TCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDP 913

Query: 548  DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
             +   YV++SN+ A   RW+E   +R++M   G++K PG S+IE N  +  F A  K+HP
Sbjct: 914  QNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHP 973

Query: 608  QTKEIELMLKDMTMKLKSAGYVPNT---VQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
            +T+EI   L+ +T++ K  GY+P+T   +Q V D+ EEE+E  +  HSE+LAL+ GLI+ 
Sbjct: 974  KTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISL 1033

Query: 665  RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              K TIR+ KNLRICGDCH A K +S+I  R I+ RD  RFH F+ G CSC D+W
Sbjct: 1034 PKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 154/587 (26%), Positives = 279/587 (47%), Gaps = 53/587 (9%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           L +SSL+       S ++   IH Q++ +G N      ++++  +A SGC + L  +R L
Sbjct: 72  LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKL 131

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++   N+  WNT++  Y+R D   E L LY  M   G  S + FTFP V+ +C  +  
Sbjct: 132 FEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS-DKFTFPSVIKACIAMED 190

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
                Q+   ++K GL  +LF+  AL+  Y+ FG++++A    +      +V++N +I G
Sbjct: 191 MGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAG 250

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-V 243
           Y ++     A  +F +M    + PD FTF +    C  L     GKQ H+   K + C  
Sbjct: 251 YVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHS---KLIACGF 307

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +  +  A+I+MYAKC       +VF  MG  ++   W+S                   
Sbjct: 308 KGDTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNS------------------- 347

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                       +IS  +Q G F+ AL LF +M+  G   +   + ++L A  GL  +  
Sbjct: 348 ------------IISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGK 395

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+ LH   + N++   +I L +A++DMY+KCG ++ A  VF  + +  +    +N++++G
Sbjct: 396 GRELHGHLVRNLL-NSDIILGSALVDMYSKCGMVEEAHQVFRSLLE--RNEVSYNALLAG 452

Query: 424 LAQHGLGETSIAVFREMELM-GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             Q G  E ++ ++ +M+   G++PD  TF T+L  C++     +G+Q    ++   I  
Sbjct: 453 YVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITK 512

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE----IA 538
            +     +V + +  GRL+ A  +   M  + N+  W +++      +N +  E      
Sbjct: 513 NIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEG--YQQNGETQEALRLFK 569

Query: 539 GQKLLDLEPDHGAHYVLLSN--MLAETYRWEEARQ--VRKLMDDSGI 581
             +L  ++PD  +   +LS+   L+++ +  E     VR  M++ GI
Sbjct: 570 QMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 616



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 261/510 (51%), Gaps = 52/510 (10%)

Query: 26  QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q+   +V +GLN ++     L+  +A  G  +    S     +I+  ++  WN ++ GY 
Sbjct: 196 QLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTS---LDEIEGTSVVTWNAVIAGYV 252

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           +  S +EA  ++  ML  G V P+NFTF   L  C  L S   G Q+H  +I  G + D 
Sbjct: 253 KILSWEEAWGIFDRMLKIG-VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDT 311

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ NALI  Y+      +  KVF+    R+ V++N++I+  AQ      AL LF +MQ+S
Sbjct: 312 FVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 371

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
             + + F   ++  A   L D   G++ H  + +NL  + S+++L +A+++MY+KCG++ 
Sbjct: 372 GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL--LNSDIILGSALVDMYSKCGMVE 429

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A +VF ++ + ++  +++++++GY +EGK E A +L+  M   D               
Sbjct: 430 EAHQVFRSL-LERNEVSYNALLAGYVQEGKAEEALELYHDMQSED--------------- 473

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
                          GI PD+ T   +L  C      + G+++H   I   +  +NI + 
Sbjct: 474 ---------------GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI-TKNIIVE 517

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           T ++ MY++CG ++ A  +F ++ +  +    +NS+I G  Q+G  + ++ +F++M+L G
Sbjct: 518 TELVHMYSECGRLNYAKEIFNRMAE--RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 575

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG----CMVDLLARDGRL 500
           +KPD  +  ++L +C      ++G++      N+ ++  ME  G     +VD+ A+ G +
Sbjct: 576 IKPDCFSLSSMLSSCVSLSDSQKGRELH----NFIVRNTMEEEGILQVVLVDMYAKCGSM 631

Query: 501 DEAYGLI-QSMPYDA--NSVIWRALLAACR 527
           D A+ +  Q++  D   N+V+  A + + R
Sbjct: 632 DYAWKVYDQTIKKDVILNNVMVSAFVNSGR 661



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 215/452 (47%), Gaps = 48/452 (10%)

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           T+   ++  DSP+      TS+ +K     N   +  ++  C   +SF+ G  IH  +I 
Sbjct: 45  TIKLKFNGPDSPKP-----TSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMIS 99

Query: 138 FGLEFDLFIRNALIHFYSIFGYINN---AHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            G   D ++   ++  Y+  G +++   A K+FE    R+L ++NT+I  YA+V +    
Sbjct: 100 NGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEV 159

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNMLLKTAV 253
           L L+ +M+ S    D FTF ++  AC  + D    +Q  + V K  L C   N+ +  A+
Sbjct: 160 LRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNC---NLFVGGAL 216

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           ++ YA+ G M+ A      +    S   W+++I+GY +                  ++SW
Sbjct: 217 VDGYARFGWMDDAVTSLDEI-EGTSVVTWNAVIAGYVK------------------ILSW 257

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                         +A  +F +M  +G+ PD  T  + LR C  L + D GK++H + I 
Sbjct: 258 -------------EEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIA 304

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  + F+  A+IDMYAKC   ++ L VF ++ +  +    +NSIIS  AQ G    +
Sbjct: 305 -CGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVT--WNSIISAEAQFGHFNDA 361

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           + +F  M+  G K +     ++L A +    + +G++    ++   +   +     +VD+
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDM 421

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            ++ G ++EA+ + +S+  + N V + ALLA 
Sbjct: 422 YSKCGMVEEAHQVFRSL-LERNEVSYNALLAG 452


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 412/714 (57%), Gaps = 45/714 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + ++LL +C   ++L+Q  ++H ++   G +  I   + ++S +   G          +F
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE---VF 370

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   N+  W  ++ G+++     EA + +  M+  GI  PN  TF  +L +C+  S+ 
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI-EPNRVTFMSILGACSSPSAL 429

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           K G QI  HII+ G   D  +R AL+  Y+  G + +AH+VFE    +++V++N +I  Y
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q ++   AL  F+ +    I+P++ TF ++ + C   +   +GK  H ++ K    + S
Sbjct: 490 VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK--AGLES 547

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  A+++M+  CG                                 +  A+ LF+ M
Sbjct: 548 DLHVSNALVSMFVNCG--------------------------------DLMSAKNLFNDM 575

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            +RDLVSW  +I+G+ Q G    A + F  M+  GI PD++T   +L AC    AL  G+
Sbjct: 576 PKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGR 635

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           RLH   I    F  ++ + T +I MY KCGSI+ A  VF+K+PK  K V  + S+I+G A
Sbjct: 636 RLHA-LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK--KNVYSWTSMITGYA 692

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHG G+ ++ +F +M+  G+KPD +TFV  L AC+H GL+EEG   F+SM  + I+P+ME
Sbjct: 693 QHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRME 752

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDL  R G L+EA   I  M  + +S +W ALL AC++H N ++ E A QK L+L
Sbjct: 753 HYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL 812

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +P+    +V+LSN+ A    W+E  ++RK+M D G+ K PG S+IE +G +H F +  K+
Sbjct: 813 DPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKT 872

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQT+EI   L+ + M+++  GYVP+T  V+ DV++ EKE  + YHSE+LA+ +GL+ + 
Sbjct: 873 HPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTP 932

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               I I+KNLR+CGDCH A K +S+I +R+I+ RD+ RFH FK G CSC DFW
Sbjct: 933 PLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  219 bits (559), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 152/529 (28%), Positives = 260/529 (49%), Gaps = 43/529 (8%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFS 66
           +S+LL L    K+L    +I+  I  SG+   I   + LI+ +A  G       ++ +F 
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCG---NTISAKQIFD 169

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +++ WN L+ GY +    +EA  L+  M+    V P+  TF  +LN+CA   +  
Sbjct: 170 DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACADARNVD 228

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +++  I+K G + DLF+  ALI+ +   G I +A KVF+    RDLV++ ++I G A
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +      A  LF++M++  +QPD   FV++  AC        GK+ HA + K +G   + 
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGW-DTE 346

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + + TA+++MY KCG M  A  VF  +   ++  +W++MI+G+ + G+I+          
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLV-KGRNVVSWTAMIAGFAQHGRID---------- 395

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                +A   F KM   GI P+ VT +++L AC    AL  G++
Sbjct: 396 ---------------------EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +    IE   +G +  + TA++ MYAKCGS+  A  VF KI K  + V  +N++I+   Q
Sbjct: 435 IQDHIIE-AGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK--QNVVAWNAMITAYVQ 491

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           H   + ++A F+ +   G+KP+  TF ++L  C     +E GK     ++  G++  +  
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
              +V +    G L  A  L   MP   + V W  ++A    H   ++ 
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 219/419 (52%), Gaps = 38/419 (9%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           T+  +L  C +  +   G +I+ HI K G++ D+F+ N LI+ Y+  G   +A ++F+  
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             +D+ S+N L+ GY Q      A  L  +M    ++PD  TFV+M +AC +  +   G+
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           + + ++ K      +++ + TA+INM+ KCG +  A +VF  +  ++    W+SMI+G  
Sbjct: 232 ELYNLILK--AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSMITGLA 288

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           R G+                               F QA  LF +ME  G+ PD+V  V+
Sbjct: 289 RHGR-------------------------------FKQACNLFQRMEEEGVQPDKVAFVS 317

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +LRAC    AL+ GK++H + ++ V +   I++ TA++ MY KCGS++ AL VF  + K 
Sbjct: 318 LLRACNHPEALEQGKKVHAR-MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKG 375

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
              VS + ++I+G AQHG  + +   F +M   G++P+ VTF+++L ACS    ++ G+Q
Sbjct: 376 RNVVS-WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             + ++  G          ++ + A+ G L +A+ + + +    N V W A++ A   H
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L + +S  SL+    +H  I+ +GL    H+S++ L+S F   G    L  ++ LF+
Sbjct: 518 TSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNA-LVSMFVNCG---DLMSAKNLFN 573

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   ++  WNT++ G+ +    Q A   +  M   GI  P+  TF  +LN+CA   +  
Sbjct: 574 DMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI-KPDKITFTGLLNACASPEALT 632

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++H  I +   + D+ +   LI  Y+  G I +AH+VF     +++ S+ ++I GYA
Sbjct: 633 EGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYA 692

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      AL LF +MQ   ++PD  TFV   SAC       I +  H         +   
Sbjct: 693 QHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG--LIEEGLHHFQSMKEFNIEPR 750

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFD 303
           M     +++++ + GL+N A      M +   +  W +++        +   E+A Q   
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           ++D  D   +  + + Y+  G + +  ++   M   G+
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 139/277 (50%), Gaps = 7/277 (2%)

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D +D     A+++  S+ G F++A+++  +++S  I     T  A+L+ C+    L  G+
Sbjct: 71  DIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGE 130

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           R++  +I+      +IF+   +I+MYAKCG+  +A  +F  + +  K V  +N ++ G  
Sbjct: 131 RIY-NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMRE--KDVYSWNLLLGGYV 187

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHGL E +  +  +M    +KPD  TFV++L AC+    V++G++ +  +L  G    + 
Sbjct: 188 QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLF 247

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD- 544
               ++++  + G + +A  +  ++P   + V W +++     H   K      Q++ + 
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306

Query: 545 -LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            ++PD  A +V L          E+ ++V   M + G
Sbjct: 307 GVQPDKVA-FVSLLRACNHPEALEQGKKVHARMKEVG 342


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/714 (36%), Positives = 412/714 (57%), Gaps = 45/714 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + ++LL +C   ++L+Q  ++H ++   G +  I   + ++S +   G          +F
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE---VF 370

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   N+  W  ++ G+++     EA + +  M+  GI  PN  TF  +L +C+  S+ 
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI-EPNRVTFMSILGACSSPSAL 429

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           K G QI  HII+ G   D  +R AL+  Y+  G + +AH+VFE    +++V++N +I  Y
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q ++   AL  F+ +    I+P++ TF ++ + C   +   +GK  H ++ K    + S
Sbjct: 490 VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK--AGLES 547

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  A+++M+  CG                                 +  A+ LF+ M
Sbjct: 548 DLHVSNALVSMFVNCG--------------------------------DLMSAKNLFNDM 575

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            +RDLVSW  +I+G+ Q G    A + F  M+  GI PD++T   +L AC    AL  G+
Sbjct: 576 PKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGR 635

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           RLH   I    F  ++ + T +I MY KCGSI+ A  VF+K+PK  K V  + S+I+G A
Sbjct: 636 RLHA-LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK--KNVYSWTSMIAGYA 692

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHG G+ ++ +F +M+  G+KPD +TFV  L AC+H GL+EEG   F+SM  + I+P+ME
Sbjct: 693 QHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRME 752

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDL  R G L+EA   I  M  + +S +W ALL AC++H N ++ E A QK L+L
Sbjct: 753 HYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL 812

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +P+    +V+LSN+ A    W+E  ++RK+M D G+ K PG S+IE +G +H F +  K+
Sbjct: 813 DPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKT 872

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQT+EI   L+ + M+++  GYVP+T  V+ DV++ EKE  + YHSE+LA+ +GL+ + 
Sbjct: 873 HPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTP 932

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               I I+KNLR+CGDCH A K +S+I +R+I+ RD+ RFH FK G CSC DFW
Sbjct: 933 PLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/529 (28%), Positives = 260/529 (49%), Gaps = 43/529 (8%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFS 66
           +S+LL L    K+L    +I+  I  SG+   I   + LI+ +A  G       ++ +F 
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCG---NTISAKQIFD 169

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +++ WN L+ GY +    +EA  L+  M+    V P+  TF  +LN+CA   +  
Sbjct: 170 DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACADARNVD 228

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +++  I+K G + DLF+  ALI+ +   G I +A KVF+    RDLV++ ++I G A
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +      A  LF++M++  +QPD   FV++  AC        GK+ HA + K +G   + 
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGW-DTE 346

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + + TA+++MY KCG M  A  VF  +   ++  +W++MI+G+ + G+I+          
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLV-KGRNVVSWTAMIAGFAQHGRID---------- 395

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                +A   F KM   GI P+ VT +++L AC    AL  G++
Sbjct: 396 ---------------------EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +    IE   +G +  + TA++ MYAKCGS+  A  VF KI K  + V  +N++I+   Q
Sbjct: 435 IQDHIIE-AGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK--QNVVAWNAMITAYVQ 491

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           H   + ++A F+ +   G+KP+  TF ++L  C     +E GK     ++  G++  +  
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
              +V +    G L  A  L   MP   + V W  ++A    H   ++ 
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 220/419 (52%), Gaps = 38/419 (9%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           T+  +L  C +  +   G +I+ HI K G++ D+F+RN LI+ Y+  G   +A ++F+  
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             +D+ S+N L+ GY Q      A  L  +M    ++PD  TFV+M +AC +  +   G+
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           + + ++ K      +++ + TA+INM+ KCG +  A +VF  +  ++    W+SMI+G  
Sbjct: 232 ELYNLILK--AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSMITGLA 288

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           R G+                               F QA  LF +ME  G+ PD+V  V+
Sbjct: 289 RHGR-------------------------------FKQACNLFQRMEEEGVQPDKVAFVS 317

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +LRAC    AL+ GK++H + ++ V +   I++ TA++ MY KCGS++ AL VF  + K 
Sbjct: 318 LLRACNHPEALEQGKKVHAR-MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKG 375

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
              VS + ++I+G AQHG  + +   F +M   G++P+ VTF+++L ACS    ++ G+Q
Sbjct: 376 RNVVS-WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             + ++  G          ++ + A+ G L +A+ + + +    N V W A++ A   H
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L + +S  SL+    +H  I+ +GL    H+S++ L+S F   G    L  ++ LF+
Sbjct: 518 TSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNA-LVSMFVNCG---DLMSAKNLFN 573

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   ++  WNT++ G+ +    Q A   +  M   GI  P+  TF  +LN+CA   +  
Sbjct: 574 DMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI-KPDKITFTGLLNACASPEALT 632

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++H  I +   + D+ +   LI  Y+  G I +AH+VF     +++ S+ ++I GYA
Sbjct: 633 EGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYA 692

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      AL LF +MQ   ++PD  TFV   SAC       I +  H         +   
Sbjct: 693 QHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG--LIEEGLHHFQSMKEFNIEPR 750

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFD 303
           M     +++++ + GL+N A      M +   +  W +++        +   E+A Q   
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           ++D  D   +  + + Y+  G + +  ++   M   G+
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 139/277 (50%), Gaps = 7/277 (2%)

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D +D     A+++  S+ G F++A+++  +++S  I     T  A+L+ C+    L  G+
Sbjct: 71  DIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGE 130

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           R++  +I+      +IF+   +I+MYAKCG+  +A  +F  + +  K V  +N ++ G  
Sbjct: 131 RIY-NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMRE--KDVYSWNLLLGGYV 187

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHGL E +  +  +M    +KPD  TFV++L AC+    V++G++ +  +L  G    + 
Sbjct: 188 QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLF 247

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD- 544
               ++++  + G + +A  +  ++P   + V W +++     H   K      Q++ + 
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306

Query: 545 -LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            ++PD  A +V L          E+ ++V   M + G
Sbjct: 307 GVQPDKVA-FVSLLRACNHPEALEQGKKVHARMKEVG 342


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/790 (35%), Positives = 442/790 (55%), Gaps = 83/790 (10%)

Query: 4    LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNH--HISSSQ----LISFFALSGCKNG 57
            +V+  ++ L++L +C S  +AL   G+++HS ++   H S  Q    LIS +A  G    
Sbjct: 381  VVMNRTTYLSVLNAC-STSKALGA-GELIHSHISEVGHSSDVQIGNSLISMYARCG---D 435

Query: 58   LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
            L R+R LF+ +   ++  WN ++ GY+R +   EA+ LY  M S+G V P   TF  +L+
Sbjct: 436  LPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG-VKPGRVTFLHLLS 494

Query: 118  SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
            +C   S++  G  IH  I++ G++ +  + NAL++ Y   G I  A  VFEG+ ARD++S
Sbjct: 495  ACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554

Query: 178  YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
            +N++I G+AQ      A  LF +M+   ++PD  TF ++   C       +G+Q H ++ 
Sbjct: 555  WNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLII 614

Query: 238  K-------NLGCVGSNMLLK----------------------TAVINMYAKCGLMNMAER 268
            +       NLG    NM ++                      TA+I  +A  G    A  
Sbjct: 615  ESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFE 674

Query: 269  VFSTM--------------------------------------GMSKSTAAWSSMISGYT 290
            +F  M                                      G    T   +++IS Y+
Sbjct: 675  LFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYS 734

Query: 291  REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
            + G +  AR++FD+M  RD++SW  MI+GY+Q G    AL+   +M+  G+  ++ + V+
Sbjct: 735  KSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVS 794

Query: 351  VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            +L AC    AL+ GKR+H + ++  + G ++ +  A+I MYAKCGS++ A  VF    + 
Sbjct: 795  ILNACSSFSALEEGKRVHAEIVKRKMQG-DVRVGAALISMYAKCGSLEEAQEVFDNFTE- 852

Query: 411  LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
             K V  +N++I+  AQHGL   ++  F  M+  G+KPDG TF ++L AC+H GLV EG +
Sbjct: 853  -KNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNR 911

Query: 471  FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             F S+ + +G+ P +EHYGC+V LL R GR  EA  LI  MP+  ++ +W  LL ACR+H
Sbjct: 912  IFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIH 971

Query: 530  RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
             N  + E A    L L   + A YVLLSN+ A   RW++  ++R++M+  GI+K PG S+
Sbjct: 972  GNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSW 1031

Query: 590  IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
            IE +  +H F+A+ +SHP+T EI   LK ++++++ AGY P+T  V+ ++D+E +ET + 
Sbjct: 1032 IEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLC 1091

Query: 650  YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
             HSE+LA+A+GL+ +     IRI KNLRICGDCH A K +S++  REI+ RD+ RFH FK
Sbjct: 1092 THSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFK 1151

Query: 710  KGNCSCMDFW 719
             G CSC DFW
Sbjct: 1152 NGKCSCEDFW 1161



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 252/517 (48%), Gaps = 43/517 (8%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           +LL    +   L +  +IH   V+ GLN  I   + L + F   G   G  ++   F+  
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADR 348

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           D   + ++N L+   ++    +EA   Y  M S G+V  N  T+  VLN+C+   +  +G
Sbjct: 349 D---VVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVM-NRTTYLSVLNACSTSKALGAG 404

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH HI + G   D+ I N+LI  Y+  G +  A ++F     RDL+S+N +I GYA+ 
Sbjct: 405 ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARR 464

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           ++   A+ L+++MQ   ++P   TF+ + SACT  +    GK  H  + ++   + SN  
Sbjct: 465 EDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS--GIKSNGH 522

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L  A++NMY +CG +  A+ VF     ++   +W+SMI+G+ + G  E A +LF +M + 
Sbjct: 523 LANALMNMYRRCGSIMEAQNVFEGT-RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKE 581

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          G+ PD++T  +VL  C    AL+ G+++H
Sbjct: 582 -------------------------------GLEPDKITFASVLVGCKNPEALELGRQIH 610

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              IE+ +   ++ L  A+I+MY +CGS+  A  VF+ +    + V  + ++I G A  G
Sbjct: 611 MLIIESGL-QLDVNLGNALINMYIRCGSLQDAYEVFHSLRH--RNVMSWTAMIGGFADQG 667

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               +  +F +M+  G KP   TF ++L AC     ++EGK+    +LN G +       
Sbjct: 668 EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN 727

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            ++   ++ G + +A  +   MP + + + W  ++A 
Sbjct: 728 ALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAG 763



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/587 (25%), Positives = 288/587 (49%), Gaps = 63/587 (10%)

Query: 9   SSLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           ++ + L+++C   +SL +A +IH Q+V +G+   I  S L+    +  C++ +  +  +F
Sbjct: 83  AAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVK-CRS-VSDAHQVF 140

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   ++  WN+L+  Y++    ++A  L+  M + G + P+  T+  +L +C   +  
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI-PSKITYISILTACCSPAEL 199

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G +IH  II+ G + D  ++N+L++ Y     + +A +VF G   RD+VSYNT++  Y
Sbjct: 200 EYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLY 259

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ       + LF +M    I PD  T++ +  A T  +    GK+ H +   N G + S
Sbjct: 260 AQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAV-NEG-LNS 317

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ + TA+  M+ +C                                G +  A+Q  +  
Sbjct: 318 DIRVGTALATMFVRC--------------------------------GDVAGAKQALEAF 345

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             RD+V + A+I+  +Q G + +A E + +M S G+  +  T ++VL AC    AL  G+
Sbjct: 346 ADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGE 405

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H  +I  V    ++ +  ++I MYA+CG +  A  +F  +PK  + +  +N+II+G A
Sbjct: 406 LIH-SHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK--RDLISWNAIIAGYA 462

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           +      ++ ++++M+  G+KP  VTF+ +L AC++     +GK   E +L  GIK    
Sbjct: 463 RREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGH 522

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNAKIGEIAGQKLL- 543
               ++++  R G + EA  + +     A  +I W +++A    H + +    A  KL  
Sbjct: 523 LANALMNMYRRCGSIMEAQNVFEGT--RARDIISWNSMIAGHAQHGSYE----AAYKLFL 576

Query: 544 -----DLEPDHGAHYVLLSNMLAETYRWEE---ARQVRKLMDDSGIQ 582
                 LEPD     +  +++L      E     RQ+  L+ +SG+Q
Sbjct: 577 EMKKEGLEPDK----ITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 200/418 (47%), Gaps = 38/418 (9%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N   +  ++ +C R  S     +IH  +++ G+  D+F+ N LI+ Y     +++AH+VF
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
                RD++S+N+LI+ YAQ      A  LF +MQ +   P   T++++ +AC    +  
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELE 200

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            GK+ H+ + +       +  ++ +++NMY KC  +  A +VFS +              
Sbjct: 201 YGKKIHSKIIE--AGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI-------------- 244

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y R+                 +VS+  M+  Y+Q     + + LFG+M S GI PD+VT
Sbjct: 245 -YRRD-----------------VVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT 286

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
            + +L A      LD GKR+H+  + N     +I + TA+  M+ +CG +  A       
Sbjct: 287 YINLLDAFTTPSMLDEGKRIHKLAV-NEGLNSDIRVGTALATMFVRCGDVAGAKQALEAF 345

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
               + V ++N++I+ LAQHG  E +   + +M   G+  +  T+++VL ACS    +  
Sbjct: 346 AD--RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGA 403

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G+     +   G    ++    ++ + AR G L  A  L  +MP   + + W A++A 
Sbjct: 404 GELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/712 (37%), Positives = 418/712 (58%), Gaps = 43/712 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS-RILFSQI 68
           S+L    S  +LK    +H +I+++G   H S + + +       K G ++  R +F ++
Sbjct: 232 SVLNAFSSPAALKWGKAVHSRILNAG---HESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            N ++  WNT++ G +     +EA  +Y  M  +G++ PN  T+  +LN+C   ++   G
Sbjct: 289 VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM-PNKITYVILLNACVNSAALHWG 347

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  + K G   D+ ++NALI  YS  G I +A  VF+  + +D++S+  +I G A+ 
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKS 407

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL ++++MQ + ++P+  T+ ++ +AC+       G++ H  V +    + ++  
Sbjct: 408 GFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVE--AGLATDAH 465

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +   ++NMY+ CG                                 ++ ARQ+FD+M QR
Sbjct: 466 VGNTLVNMYSMCG--------------------------------SVKDARQVFDRMIQR 493

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D+V++ AMI GY+      +AL+LF +++  G+ PD+VT + +L AC   G+L++ + +H
Sbjct: 494 DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIH 553

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +    F  +  +  A++  YAKCGS   A  VF K+ K  + V  +N+II G AQHG
Sbjct: 554 T-LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTK--RNVISWNAIIGGSAQHG 610

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
            G+ ++ +F  M++ G+KPD VTFV++L ACSH GL+EEG+++F SM  ++ I P +EHY
Sbjct: 611 RGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHY 670

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDLL R G+LDEA  LI++MP+ AN+ IW ALL ACR+H N  + E A +  L L+ 
Sbjct: 671 GCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDL 730

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           D+   YV LS+M A    W+ A ++RKLM+  G+ K PG S+I+    LH F+A  +SHP
Sbjct: 731 DNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHP 790

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q+++I   L  +T  +K  GYVP+T  V+ DVDE EKE  V +HSE+LA+A+GLI++   
Sbjct: 791 QSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPG 850

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             I I KNLR+C DCH A K +S+I  REI+ RD  RFH FK G CSC D+W
Sbjct: 851 TRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 153/584 (26%), Positives = 281/584 (48%), Gaps = 59/584 (10%)

Query: 9   SSLLALLESC---KSLKQALQIHGQIV-HSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           S  + +L+ C   K L    Q+H  I+ H  +    + + LI+ +   G    +  +R +
Sbjct: 24  SDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCG---SIEEARQV 80

Query: 65  FSQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           + ++      +  WN ++ GY +    ++AL L   M   G+ +P+  T    L+SC   
Sbjct: 81  WKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL-APDRTTIMSFLSSCKSP 139

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            + + G +IH   ++ GL FD+ + N +++ Y+  G I  A +VF+    + +VS+   I
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GYA       A  +F+KM+   + P+  T++++ +A +     + GK  H+ +  N G 
Sbjct: 200 GGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRIL-NAGH 258

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S+  + TA++ MYAKCG      +VF  + +++   AW++MI G    G  E A +++
Sbjct: 259 -ESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGYWEEASEVY 316

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           +QM QR+                              G+ P+++T V +L ACV   AL 
Sbjct: 317 NQM-QRE------------------------------GVMPNKITYVILLNACVNSAALH 345

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           +GK +H + +    F  +I +  A+I MY++CGSI  A  VF K+ +  K V  + ++I 
Sbjct: 346 WGKEIHSR-VAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVR--KDVISWTAMIG 402

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
           GLA+ G G  ++ V++EM+  G++P+ VT+ ++L ACS    +E G++  + ++  G+  
Sbjct: 403 GLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLAT 462

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
                  +V++ +  G + +A  +   M    + V + A++     H   K       KL
Sbjct: 463 DAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGK----EALKL 517

Query: 543 LD------LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            D      L+PD    Y+ + N  A +   E AR++  L+   G
Sbjct: 518 FDRLQEEGLKPDK-VTYINMLNACANSGSLEWAREIHTLVRKGG 560



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 200/420 (47%), Gaps = 40/420 (9%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N+  +  +L  C  +    +G Q+H HII+     D +  NALI+ Y   G I  A +V+
Sbjct: 22  NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81

Query: 168 E--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
           +    + R + S+N ++ GY Q      AL L R+MQ   + PD  T ++  S+C     
Sbjct: 82  KKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGA 141

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
              G++ H    +    +  ++ +   ++NMYAKCG                        
Sbjct: 142 LEWGREIHFQAMQ--AGLLFDVKVANCILNMYAKCG------------------------ 175

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
                    IE AR++FD+M+++ +VSWT  I GY+  G    A E+F KME  G+ P+ 
Sbjct: 176 --------SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNR 227

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           +T ++VL A     AL +GK +H + I N     +  + TA++ MYAKCGS      VF 
Sbjct: 228 ITYISVLNAFSSPAALKWGKAVHSR-ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFE 286

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           K+    + +  +N++I GLA+ G  E +  V+ +M+  G+ P+ +T+V +L AC +   +
Sbjct: 287 KLVN--RDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAAL 344

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             GK+    +   G    +     ++ + +R G + +A  +   M    + + W A++  
Sbjct: 345 HWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIGG 403



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 179/399 (44%), Gaps = 75/399 (18%)

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ + + +Q    Q ++  ++ M   C E+ D   G+Q H  + ++      +     A+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTV--PDQYTVNAL 64

Query: 254 INMYAKCGLMNMAERVFSTMG-MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           INMY +CG +  A +V+  +  M ++  +W++M+ GY + G IE+A +L  QM Q     
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQH---- 120

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                                      G+ PD  T+++ L +C   GAL++G+ +H Q +
Sbjct: 121 ---------------------------GLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM 153

Query: 373 E-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +  ++F  ++ +   +++MYAKCGSI+ A  VF K+ K  K+V  +   I G A  G  E
Sbjct: 154 QAGLLF--DVKVANCILNMYAKCGSIEEAREVFDKMEK--KSVVSWTITIGGYADCGRSE 209

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
           T+  +F++ME  G+ P+ +T+++VL A S    ++ GK     +LN G +        +V
Sbjct: 210 TAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALV 269

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
            + A+ G   +   + + +  + + + W  ++                            
Sbjct: 270 KMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGG-------------------------- 302

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
                   LAE   WEEA +V   M   G+  P   +Y+
Sbjct: 303 --------LAEGGYWEEASEVYNQMQREGVM-PNKITYV 332


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/660 (39%), Positives = 392/660 (59%), Gaps = 40/660 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +  +P++F+WN ++R YSR      A+ +Y  M     VSP+ F+FP VL +C+
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARM-QVACVSPDGFSFPCVLKACS 184

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L + + G ++H  I + G E D+F++N L+  Y+  G I  A+ VF   + R +VS+ +
Sbjct: 185 ALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTS 244

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-N 239
           +I+GYAQ  +P  AL +F +M+ + ++PD    V++  A T++ D   GK  H  V K  
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 304

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           L C      L  ++ ++YAKCG                                 +  AR
Sbjct: 305 LEC---EFDLLISLTSLYAKCG--------------------------------HVMVAR 329

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
             F+Q++   L+ W AMISGY + G   +A+ELF  M+S  I PD +T+ + + AC  +G
Sbjct: 330 LFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIG 389

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           +L+   R   +YI    F  ++ + T++ID YAKCGS+D A  VF +IP   K V ++++
Sbjct: 390 SLELA-RWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD--KDVVVWSA 446

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           ++ G   HG G  SI +F  M   G+ P+ VTFV +L AC + GLVEEG   F  M +YG
Sbjct: 447 MMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYG 506

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I+P+ +HY C+VDLL R G LD AY  + +MP +    +W ALL+AC++HR+  +GE A 
Sbjct: 507 IEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAA 566

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           ++L  L+P +  HYV LSN+ A +  W+   +VR LM + G+ K  G+S IE NG L  F
Sbjct: 567 ERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAF 626

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            A  K+HP++KEI   ++D+  +LK AG+VP+T  V+ D++ EE E  +  HSE+LA+A+
Sbjct: 627 QAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAY 686

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI++    T+RITKNLR C +CH A KL+S++  REI+VRDA RFH FK G CSC D+W
Sbjct: 687 GLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 199/404 (49%), Gaps = 38/404 (9%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QI+  ++  GL++  F+   L++  S  G ++ A K+F+     D+  +N ++  Y++  
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ ++ +MQ +C+ PD F+F  +  AC+ L    +G++ H  ++++     S++ +
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH--GFESDVFV 210

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +  ++ +YAKCG +  A  VF  + + ++  +W+S+ISGY + G+   A ++F +M + +
Sbjct: 211 QNGLVALYAKCGEIVRANAVFGRL-VDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTN 269

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                                          + PD + +V+VLRA   +  L+ GK +H 
Sbjct: 270 -------------------------------VRPDWIALVSVLRAYTDVEDLEHGKSIHG 298

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             I+ +       L  ++  +YAKCG +  A   F ++     ++  +N++ISG  ++G 
Sbjct: 299 CVIK-MGLECEFDLLISLTSLYAKCGHVMVARLFFNQVEN--PSLIFWNAMISGYVKNGY 355

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
            E +I +FR M+   ++PD +T  + + AC+  G +E  +   E +     +  +     
Sbjct: 356 AEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTS 415

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           ++D  A+ G +D A  +   +P D + V+W A++    LH   +
Sbjct: 416 LIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQGR 458



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 199/431 (46%), Gaps = 51/431 (11%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           S   +L++C +L   +   ++HGQI   G    +   + L++ +A  G    + R+  +F
Sbjct: 175 SFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCG---EIVRANAVF 231

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++ +  I  W +++ GY+++  P EAL +++ M  K  V P+      VL +   +   
Sbjct: 232 GRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEM-RKTNVRPDWIALVSVLRAYTDVEDL 290

Query: 126 KSGCQIHCHIIKFGL--EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + G  IH  +IK GL  EFDL I  +L   Y+  G++  A   F       L+ +N +I+
Sbjct: 291 EHGKSIHGCVIKMGLECEFDLLI--SLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMIS 348

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY +      A+ LFR M+   I+PD+ T  +  +AC ++    + +      Y ++   
Sbjct: 349 GYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDE--YISMSEF 406

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            +++++ T++I+ YAKCG ++MA  VF  +   K    WS+M+ GY   G+         
Sbjct: 407 RNDVIVNTSLIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQGR------- 458

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                                   +++ LF  M   G+ P++VT V +L AC   G ++ 
Sbjct: 459 ------------------------ESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEE 494

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G  L  +  +  +  R+      V+D+  + G +D A +    +P     VS++ +++S 
Sbjct: 495 GWDLFHRMRDYGIEPRHQHY-ACVVDLLGRAGHLDRAYNFVMNMPIE-PGVSVWGALLSA 552

Query: 424 LAQH---GLGE 431
              H    LGE
Sbjct: 553 CKIHRHVTLGE 563


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/645 (41%), Positives = 380/645 (58%), Gaps = 38/645 (5%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           +N LMR    +  P++AL L+  ML    V P+  T    L SC+R+ +   G  I  + 
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
           +K GL  D F+ ++LIH Y+    +  A  +F+      +V +N +I  Y +       +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +F+ M +  +  D  T V++ +AC  + D ++GK     V +  G V  N  L TA+I+
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEK-GLV-RNRNLMTALID 263

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MYAKCG +  A R+F  M  S+   AWS+MISGYT             Q DQ        
Sbjct: 264 MYAKCGELGKARRLFDGM-QSRDVVAWSAMISGYT-------------QADQ-------- 301

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
                       +AL LF +M+   + P++VTMV+VL AC  LGAL+ GK +H  YI   
Sbjct: 302 ----------CREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVH-SYIRRK 350

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
                I L TA++D YAKCG ID A+  F  +P  +K    + ++I G+A +G G  ++ 
Sbjct: 351 RLSLTIILGTALVDFYAKCGCIDDAVEAFESMP--VKNSWTWTALIKGMATNGRGREALE 408

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLL 494
           +F  M    ++P  VTF+ VL ACSH  LVEEG++ F+SM  +YGIKP+ EHYGC+VDLL
Sbjct: 409 LFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLL 468

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G +DEAY  I++MP + N+VIWRALL++C +H+N +IGE A ++++ L P H   Y+
Sbjct: 469 GRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYI 528

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LLSN+ A   +W+ A  +RK M D GI+K PG S IE +G +  F A    HPQ KEI  
Sbjct: 529 LLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQ 588

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
            +++M  ++K AGY+PNT  V  +VDE EKE  VS+HSEKLA+AFGL+      TIR++K
Sbjct: 589 KVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSK 648

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+C DCH A KL+S++Y REI+VRD  RFH FK G CSC D+W
Sbjct: 649 NLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 184/385 (47%), Gaps = 39/385 (10%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S LI  +A   C++ +  +++LF  ++   + +WN ++  Y ++ +  E + ++  ML  
Sbjct: 158 SSLIHMYA--SCRD-VAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEV 214

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G V+ +  T   V+ +C R+   K G  +  ++ + GL  +  +  ALI  Y+  G +  
Sbjct: 215 G-VAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGK 273

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F+G  +RD+V+++ +I+GY Q  +   AL LF +MQ + ++P+  T V++ SAC  
Sbjct: 274 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAV 333

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L     GK  H+ + +    +   ++L TA+++ YAKCG ++ A   F +M + K++  W
Sbjct: 334 LGALETGKWVHSYIRRKR--LSLTIILGTALVDFYAKCGCIDDAVEAFESMPV-KNSWTW 390

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +++I G    G   R R                            +ALELF  M    I 
Sbjct: 391 TALIKGMATNG---RGR----------------------------EALELFSSMRKASIE 419

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P +VT + VL AC     ++ G+R      ++            V+D+  + G ID A  
Sbjct: 420 PTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQ 479

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQH 427
               +P     V ++ +++S  A H
Sbjct: 480 FIRTMPIEPNAV-IWRALLSSCAVH 503



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 146/307 (47%), Gaps = 18/307 (5%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LI  +A  G    L ++R LF  + + ++  W+ ++ GY+++D  +EAL L++ M   
Sbjct: 259 TALIDMYAKCG---ELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEM-QL 314

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             V PN+ T   VL++CA L + ++G  +H +I +  L   + +  AL+ FY+  G I++
Sbjct: 315 AEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDD 374

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A + FE    ++  ++  LI G A       AL LF  M+ + I+P   TF+ +  AC+ 
Sbjct: 375 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSH 434

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
                 G++    + ++ G +         V+++  + GL++ A +   TM +  +   W
Sbjct: 435 SCLVEEGRRHFDSMTQDYG-IKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIW 493

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG--------YSQVGGFSQALELFG 334
            +++S       +E   +   Q     +VS     SG        Y+ VG +  A  +  
Sbjct: 494 RALLSSCAVHKNVEIGEEALKQ-----IVSLNPSHSGDYILLSNIYASVGQWKNAAMIRK 548

Query: 335 KMESLGI 341
           +M+  GI
Sbjct: 549 EMKDRGI 555


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/782 (36%), Positives = 439/782 (56%), Gaps = 76/782 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNGLFR-SRI 63
           ++ LL L  +  +      IH   V +GL   +S+   + L++++A  G   G FR +R 
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGL--LVSTYLCNNLLAYYASVGVSRGCFREARC 269

Query: 64  LFSQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS--------------- 106
           LF  I     N F WN+L+  Y++S    +A V++  M  +  VS               
Sbjct: 270 LFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFW 329

Query: 107 ---------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151
                          P+ FT   VL+SCA + +   G ++H  ++K GL   + + N+++
Sbjct: 330 DAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVL 389

Query: 152 HFYSIFGYINNAHKVFE-------------------------------GSLARDLVSYNT 180
           + Y   G    A  VFE                                 + R +VS+NT
Sbjct: 390 YMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNT 449

Query: 181 LINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +I GY Q      AL  F +M   S ++PDAFT  ++ SAC  L   ++GKQ H+ + + 
Sbjct: 450 IIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT 509

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERA 298
                S ++   A+I+ YAK G +  A R+     ++  +  ++++++ GY + G  ++A
Sbjct: 510 GMPCSSQIM--NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQA 567

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R++FD M+ RD+++WTAMI GY Q G   +A+ELF  M  +G  P+  T+ AVL AC  L
Sbjct: 568 REIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASL 627

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
             LD+GK++H + I ++   +++ ++ A+I +YA+ GS+  A  VF +I    +T++ + 
Sbjct: 628 AYLDYGKQIHCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETIT-WT 685

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
           S+I  +AQHGLGE ++ +F EM  +G+KPD +T+V VL AC+H G V++GK+++E M N 
Sbjct: 686 SMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNE 745

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI PQM HY CMVDL AR G L EA+  IQ MP   ++V+W +LLAACR+ +NA + E+
Sbjct: 746 HGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAEL 805

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A  KLL ++P +   Y  L+N+ +   RW +A ++ KL  D G++K  G+S+    G +H
Sbjct: 806 AAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVH 865

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F A    HPQ   I     +M  ++K AG+VP+   V+ DVD+E KE ++S HSEKLA+
Sbjct: 866 VFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAI 925

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI++  K T+RI KNLR+C DCH A K +S+   REI+VRDA RFH F+ G CSC D
Sbjct: 926 AFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKD 985

Query: 718 FW 719
           +W
Sbjct: 986 YW 987


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/788 (34%), Positives = 438/788 (55%), Gaps = 79/788 (10%)

Query: 4    LVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
            + L  ++ L++L +C   K+L+    IH  I   G +  +   + LIS +A  G    L 
Sbjct: 326  VALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG---DLP 382

Query: 60   RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            ++R LF  +   ++  WN ++ GY+R +   EA+ LY  M S+G V P   TF  +L++C
Sbjct: 383  KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG-VKPGRVTFLHLLSAC 441

Query: 120  ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            A  S++  G  IH  I++ G++ +  + NAL++ Y   G +  A  VFEG+ ARD++S+N
Sbjct: 442  ANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWN 501

Query: 180  TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-------- 231
            ++I G+AQ      A  LF++MQ+  ++PD  TF ++ S C       +GKQ        
Sbjct: 502  SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 232  ----------------------------FHAVVYKNL--------GCVGSNMLLK----- 250
                                        FH++ ++++        GC      +K     
Sbjct: 562  GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELF 621

Query: 251  ---------------TAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTRE 292
                           ++++ +      ++  ++V + +   G    T   +++IS Y++ 
Sbjct: 622  WQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKS 681

Query: 293  GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
            G +  AR++FD+M  RD+VSW  +I+GY+Q G    A+E   +M+   + P++ + V++L
Sbjct: 682  GSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLL 741

Query: 353  RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
             AC    AL+ GKR+H + ++  + G ++ +  A+I MYAKCGS   A  VF  I +  K
Sbjct: 742  NACSSFSALEEGKRVHAEIVKRKLQG-DVRVGAALISMYAKCGSQGEAQEVFDNIIE--K 798

Query: 413  TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
             V  +N++I+  AQHGL   ++  F  ME  G+KPDG TF ++L AC+H GLV EG Q F
Sbjct: 799  NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIF 858

Query: 473  ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             SM + YG+ P +EHYGC+V LL R  R  EA  LI  MP+  ++ +W  LL ACR+H N
Sbjct: 859  SSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 918

Query: 532  AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
              + E A    L L   + A Y+LLSN+ A   RW++  ++R++M+  GI+K PG S+IE
Sbjct: 919  IALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 978

Query: 592  HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
             +  +H F+A+ +SHP+T EI   LK ++++++ AGY P+T  V+ D+ +  +ET +  H
Sbjct: 979  VDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTH 1038

Query: 652  SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
            SE+LA+A+GLI +     IRI KNLRICGDCH A K +S++  REI+ RD+ RFH FK G
Sbjct: 1039 SERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNG 1098

Query: 712  NCSCMDFW 719
             CSC D+W
Sbjct: 1099 KCSCEDYW 1106



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 156/582 (26%), Positives = 287/582 (49%), Gaps = 49/582 (8%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           E ++ +ALL++C   + L +A +IH Q+V + +   I  S L+    +  C++ +  +  
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVK-CRS-VLDAHQ 83

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   ++  WN+L+  Y++    ++A  L+  M + G + PN  T+  +L +C   +
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPA 142

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             ++G +IH  IIK G + D  ++N+L+  Y   G +  A +VF G   RD+VSYNT++ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YAQ       L LF +M    I PD  T++ +  A T  +    GK+ H +  +    +
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE--GL 260

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S++ + TA++ M  +C                                G ++ A+Q F 
Sbjct: 261 NSDIRVGTALVTMCVRC--------------------------------GDVDSAKQAFK 288

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
               RD+V + A+I+  +Q G   +A E + +M S G+  +  T +++L AC    AL+ 
Sbjct: 289 GTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H    E+     ++ +  A+I MYA+CG +  A  +FY +PK  + +  +N+II+G
Sbjct: 349 GKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMPK--RDLISWNAIIAG 405

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            A+      ++ ++++M+  G+KP  VTF+ +L AC++     +GK   E +L  GIK  
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNAKIGEIAGQKL 542
                 ++++  R G L EA  + +     A  VI W +++A    H + +      Q++
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGT--QARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 543 L--DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
              +LEPD+     +LS         E  +Q+   + +SG+Q
Sbjct: 524 QNEELEPDNITFASVLSG-CKNPEALELGKQIHGRITESGLQ 564



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 262/521 (50%), Gaps = 46/521 (8%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           + +++L +C S   L+   +IH QI+ +G        + L+S +   G    L R+R +F
Sbjct: 130 TYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG---DLPRARQVF 186

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + I   ++  +NT++  Y++    +E L L+  M S+GI SP+  T+  +L++    S  
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSML 245

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH   ++ GL  D+ +  AL+      G +++A + F+G+  RD+V YN LI   
Sbjct: 246 DEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAAL 305

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ      A   + +M+   +  +  T++++ +AC+       GK  H+ + ++     S
Sbjct: 306 AQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED--GHSS 363

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  A+I+MYA+CG +  A  +F TM   +   +W+++I+GY R  + +R        
Sbjct: 364 DVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYAR--REDRG------- 413

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                 +A+ L+ +M+S G+ P  VT + +L AC    A   GK
Sbjct: 414 ----------------------EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H+  + + +   N  L  A+++MY +CGS+  A +VF       + V  +NS+I+G A
Sbjct: 452 MIHEDILRSGI-KSNGHLANALMNMYRRCGSLMEAQNVFEGT--QARDVISWNSMIAGHA 508

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHG  ET+  +F+EM+   L+PD +TF +VL  C +   +E GKQ    +   G++  + 
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
               ++++  R G L +A  +  S+ +  + + W A++  C
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQH-RDVMSWTAMIGGC 608


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/700 (38%), Positives = 419/700 (59%), Gaps = 12/700 (1%)

Query: 23  QALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
             +QIHG IV  G    +   + L+ F+A  G    L  +R +F ++   N+  W +++ 
Sbjct: 152 NGIQIHGLIVKMGYAKDLFVQNSLVHFYAECG---ELDSARKVFDEMSERNVVSWTSMIC 208

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           GY+R D  ++A+ L+  M+    V+PN+ T   V+++CA+L   ++G +++  I   G+E
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            +  + +AL+  Y     I+ A ++F+   A +L   N + + Y +      AL +F  M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            DS ++PD  + ++  S+C++L +   GK  H  V +N      N+    A+I+MY KC 
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC--NALIDMYMKCH 386

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
             + A R+F  M  +K+   W+S+++GY   G+++ A + F+ M ++++VSW  +ISG  
Sbjct: 387 RQDTAFRIFDRMS-NKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV 445

Query: 322 QVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           Q   F +A+E+F  M+S  G++ D VTM+++  AC  LGALD  K ++  YIE      +
Sbjct: 446 QGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY-YIEKNGIQLD 504

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + L T ++DM+++CG  ++A+S+F  +    + VS + + I  +A  G  E +I +F +M
Sbjct: 505 VRLGTTLVDMFSRCGDPESAMSIFNSLTN--RDVSAWTAAIGAMAMAGNAERAIELFDDM 562

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
              GLKPDGV FV  L ACSHGGLV++GK+ F SML  +G+ P+  HYGCMVDLL R G 
Sbjct: 563 IEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGL 622

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L+EA  LI+ MP + N VIW +LLAACR+  N ++   A +K+  L P+    YVLLSN+
Sbjct: 623 LEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNV 682

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A   RW +  +VR  M + G++KPPG S I+  G  H F +  +SHP+   IE ML ++
Sbjct: 683 YASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEV 742

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
           + +    G+VP+   V+ DVDE+EK  ++S HSEKLA+A+GLI+S    TIRI KNLR+C
Sbjct: 743 SQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVC 802

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   K  S++Y REI++RD  RFH  ++G CSC DFW
Sbjct: 803 SDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 271/531 (51%), Gaps = 73/531 (13%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDN-PN 72
           L++CK++ +    H  +   GL++ +S+ ++L++     G +  L  ++ +F   ++   
Sbjct: 39  LKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGT 98

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
            F++N+L+RGY+ S    EA++L+  M++ GI SP+ +TFPF L++CA+  +  +G QIH
Sbjct: 99  CFMYNSLIRGYASSGLCNEAILLFLRMMNSGI-SPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             I+K G   DLF++N+L+HFY+  G +++A KVF+    R++VS+ ++I GYA+     
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 193 PALWL-FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
            A+ L FR ++D  + P++ T V + SAC +L D   G++ +A + +N G +  N L+ +
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI-RNSG-IEVNDLMVS 275

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+++MY KC  +++A+R+F   G S      ++M S Y R+G                  
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLC-NAMASNYVRQGLTR--------------- 319

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
                           +AL +F  M   G+ PD ++M++ + +C  L  + +GK  H   
Sbjct: 320 ----------------EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYV 363

Query: 372 IENVVFGRNIFLTTAVIDMYAKC-------------------------------GSIDTA 400
           + N  F     +  A+IDMY KC                               G +D A
Sbjct: 364 LRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTVLCAC 459
              F  +P+  K +  +N+IISGL Q  L E +I VF  M+   G+  DGVT +++  AC
Sbjct: 423 WETFETMPE--KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            H G ++  K  +  +   GI+  +     +VD+ +R G  + A  +  S+
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/739 (37%), Positives = 423/739 (57%), Gaps = 46/739 (6%)

Query: 20  SLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN-P-NIFIW 76
           S++QA ++H  +  SG L H  S++ L++        +     R   S  D  P + F++
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPCSTFLF 70

Query: 77  NTLMRGYSRSDS-PQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLSS-FKSGCQIHC 133
           +T +R   R+ S P   ++LY  M   G+ V P+ FTF F+   CAR  +    G  +H 
Sbjct: 71  DTALRACFRASSGPDRPIILYRRM--HGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHA 128

Query: 134 HIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT------------ 180
              +  L   +  I + +IH Y+  G   +A + F+ +  +D+V++ T            
Sbjct: 129 ACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLD 188

Query: 181 -------------------LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
                              LI+GY++      A+  F  M    I PD  T + M SAC 
Sbjct: 189 DARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACG 248

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           +L D   G   H +V      +   +++  A+I+MYAKCG    A  VF  +G  +    
Sbjct: 249 QLKDLNFGCSLHMLVGDKRMLMSDKLVV--ALIDMYAKCGDTGRAREVFDALGRGRGPQP 306

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W++MI GY + G ++ AR LFDQM+  D++++ ++I+GY   G   +AL LF KM   G+
Sbjct: 307 WNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGL 366

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
             D  TMV +L A   LGAL  G+ LH   IE  +  R+++L TA++DMY KCG ++ A+
Sbjct: 367 GADNFTMVGLLTASASLGALPQGRALHA-CIEQRLVERDVYLGTALLDMYMKCGRVEEAM 425

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
             F ++  +++ V  ++++I GLA +G+G+ ++  F  M+  G   + VT++ VL ACSH
Sbjct: 426 VAFKQM--SVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSH 483

Query: 462 GGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             L++EG+ +F+ M L + I+PQ+EHYGCM+DLL R G LDEA  L+Q+MP   N+VIW 
Sbjct: 484 SCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWA 543

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           ++L+ACR+H+N  + + A   LL LEP   A YV + N+  ++ +WE+A ++R+LM+  G
Sbjct: 544 SILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRG 603

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           ++K  G+S I   G +H+F+   +SHPQ  EI +M++++  +LKSAGY P T Q+  DVD
Sbjct: 604 VKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVD 663

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEEKE  +  HSEKLA+AFGL++      + I KNLR+C DCH A KL+S ++ REI+VR
Sbjct: 664 EEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVR 723

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH F+ G CSC DFW
Sbjct: 724 DRSRFHHFRGGVCSCNDFW 742


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/643 (41%), Positives = 399/643 (62%), Gaps = 34/643 (5%)

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           ++TS  S  +  P++F FP     C  +   K   Q+H  +IK     D      L+ F 
Sbjct: 5   IFTSTTS--LWPPSSF-FP-----CKTMQDLK---QLHAQMIKTAQIRDPLAAAELLRFS 53

Query: 155 SIFGY--INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC-IQPDAF 211
           ++  +  ++ A K+F      +  SYNTLI   ++  +PC AL +F +M + C ++P+ F
Sbjct: 54  AVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCF 113

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF- 270
           TF ++F AC      R G+Q H +  K  G + S+  + + V+ MY  CG+M  A R+F 
Sbjct: 114 TFPSVFKACGRAERLREGRQVHGLAVK-FG-LDSDEFVVSNVVRMYLSCGVMEDAHRLFY 171

Query: 271 -------------STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
                            +      W+ MI GY R G++E AR LFD+M QR +VSW  MI
Sbjct: 172 RRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMI 231

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +GY+Q G F +A+E+F +M+   + P+ VT+V+VL A   LGAL+ GK +H   + N + 
Sbjct: 232 AGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNI- 290

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
           G +  L +A+IDMYAKCGSI+ AL VF  +PK  + V  +++II+GLA HG  + ++  F
Sbjct: 291 GVDDVLGSALIDMYAKCGSIEKALQVFEGLPK--RNVVTWSTIIAGLAMHGRAKDTLDHF 348

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLAR 496
            +ME  G+ P  VT++ +L ACSH GLV EG+ FF+ M+   G++P++EHYGCMVDLL R
Sbjct: 349 EDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGR 408

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G L+E+  LI +MP   + VIW+ALL AC++H N ++G+   + L++L P     YV L
Sbjct: 409 AGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVAL 468

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A    WE   +VR +M +  ++K PG S+IE +G +H FL    SHP++K+I  ML
Sbjct: 469 SNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSML 528

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
           ++M+  L   GY PNT QV+ ++DEE+KE+ ++YHSEK+A+AFGLI+++ +  +RITKNL
Sbjct: 529 QEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNL 588

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RIC DCH + KL+S+IY+R+I+VRD  RFH F  G+CSCMD+W
Sbjct: 589 RICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/654 (40%), Positives = 391/654 (59%), Gaps = 61/654 (9%)

Query: 89  PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRN 148
           P+ AL  YT M  K  +  ++F  P VL +C+++S  + G +IH   +K GL  D+F+ N
Sbjct: 90  PRYALNTYTYM-RKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148

Query: 149 ALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN----------------------GYA 186
           AL+  YS  G + +A  +F+    RD+VS++T+I                       GY 
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  +      LF +M +  + P+  T +++  +C  +   ++GK+ HA + +N    G +
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN--GFGMS 266

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + L TA+++MY KCG                                +I  AR +FD M 
Sbjct: 267 LALATALVDMYGKCG--------------------------------EIRSARAIFDSMK 294

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            +D+++WTAMIS Y+Q      A +LF +M   G+ P+E+TMV++L  C   GALD GK 
Sbjct: 295 NKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKW 354

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            H  YI+      ++ L TA+IDMYAKCG I  A  +F +     + +  +N +++G   
Sbjct: 355 FHA-YIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAID--RDICTWNVMMAGYGM 411

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           HG GE ++ +F EME +G+KP+ +TF+  L ACSH GLV EGK  FE M+ ++G+ P++E
Sbjct: 412 HGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVE 471

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDLL R G LDEAY +I+SMP   N  IW A+LAAC++H+N+ +GE+A ++LL L
Sbjct: 472 HYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLAL 531

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           EP +  + VL+SN+ A   RW +   +RK + D+GI+K PG S IE NG +H F     +
Sbjct: 532 EPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTA 591

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP  ++I  ML +M+ KLK AGY+P+T  V+ ++DEEEKET ++YHSEKLA+AFGLI++ 
Sbjct: 592 HPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTA 651

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IR+ KNLRIC DCH   KLLS+IY+R I+VRD  RFH F++G+CSC  +W
Sbjct: 652 PGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 116/484 (23%), Positives = 231/484 (47%), Gaps = 69/484 (14%)

Query: 1   MKRLVLEHSSLL--ALLESCKSLKQAL---QIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L +E  S +  ++L++C  +  A    +IHG  V +GL   +   + L+  ++  G 
Sbjct: 100 MRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECG- 158

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMR----------------------GYSRSDSPQEA 92
              L  +R+LF ++   ++  W+T++R                      GY R +  +E 
Sbjct: 159 --SLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEG 216

Query: 93  LVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
             L+  M+ + +  PN+ T   ++ SC  + + + G ++H +I++ G    L +  AL+ 
Sbjct: 217 ERLFVRMIEENVF-PNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVD 275

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y   G I +A  +F+    +D++++  +I+ YAQ      A  LF +M+D+ ++P+  T
Sbjct: 276 MYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELT 335

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            V++ S C       +GK FHA + K    V  +++LKTA+I+MYAKCG ++ A+R+FS 
Sbjct: 336 MVSLLSLCAVNGALDMGKWFHAYIDKQ--GVEVDVILKTALIDMYAKCGDISGAQRLFSE 393

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
             + +    W+ M++GY   G  E+                               AL+L
Sbjct: 394 -AIDRDICTWNVMMAGYGMHGYGEK-------------------------------ALKL 421

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +ME+LG+ P+++T +  L AC   G +  GK L ++ I +      +     ++D+  
Sbjct: 422 FTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLG 481

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           + G +D A  +   +P     ++++ ++++    H    +++      EL+ L+P    +
Sbjct: 482 RAGLLDEAYKMIESMPVT-PNIAIWGAMLAACKIH--KNSNMGELAARELLALEPQNCGY 538

Query: 453 VTVL 456
             ++
Sbjct: 539 KVLM 542


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/610 (42%), Positives = 379/610 (62%), Gaps = 14/610 (2%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSL 171
           + L+SC+ ++  K   Q H  II+ GL  D      +I F +I   G +N A +VF+   
Sbjct: 25  YGLDSCSTMAELK---QYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIP 81

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
             D   YNT+  GY + +     ++++ +M    + P+ FT+  +  AC        GKQ
Sbjct: 82  HPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ 141

Query: 232 FHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
            HA V K   G  G ++     +I+MY     +  A RVF  M   +   +W+S+I+GY+
Sbjct: 142 IHAHVLKFGFGADGFSL---NNLIHMYVNFQSLEQARRVFDNMP-QRDVVSWTSLITGYS 197

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           + G +++AR++F+ M +R+ VSW AMI+ Y Q     +A  LF +M    +  D+    +
Sbjct: 198 QWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAAS 257

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +L AC GLGAL+ GK +H  YIE      +  L T VIDMY KCG ++ A  VF ++P+ 
Sbjct: 258 MLSACTGLGALEQGKWIHG-YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ- 315

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K +S +N +I GLA HG GE +I +F+EME   + PDG+TFV VL AC+H GLVEEGK 
Sbjct: 316 -KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKH 374

Query: 471 FFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F+ M    G+KP MEH+GCMVDLL R G L+EA  LI  MP + ++ +  AL+ ACR+H
Sbjct: 375 YFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIH 434

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            N ++GE  G+K+++LEP +   YVLL+N+ A   RWE+  +VRKLM+D G++K PG+S 
Sbjct: 435 GNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSM 494

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           IE    +  F+A  ++HPQ KEI   L ++   ++S GYVP+T  V+ D+DEEEKE  + 
Sbjct: 495 IESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLY 554

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           YHSEKLA+AFGL+ ++  ET+RI+KNLRIC DCH A KL+S++Y REI++RD  RFH F+
Sbjct: 555 YHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFR 614

Query: 710 KGNCSCMDFW 719
            G CSC D+W
Sbjct: 615 MGGCSCKDYW 624



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 213/460 (46%), Gaps = 74/460 (16%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRI-LF 65
           H   L  L+SC ++ +  Q H QI+  GL+  + +  ++I F A+S  K+G     + +F
Sbjct: 20  HKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAIS--KSGDLNYALEVF 77

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            +I +P+ +I+NT+ RGY R    +  + +Y+ ML K  VSPN FT+P ++ +C    + 
Sbjct: 78  DKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKS-VSPNKFTYPPLIRACCIDYAI 136

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G QIH H++KFG   D F  N LIH Y  F  +  A +VF+    RD+VS+ +LI GY
Sbjct: 137 EEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGY 196

Query: 186 AQ---------VKEPCP----------------------ALWLFRKMQDSCIQPDAFTFV 214
           +Q         V E  P                      A  LF +M+   +  D F   
Sbjct: 197 SQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 256

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           +M SACT L     GK  H  + K+   +  +  L T VI+MY KCG +  A  VF+ + 
Sbjct: 257 SMLSACTGLGALEQGKWIHGYIEKS--GIELDSKLATTVIDMYCKCGCLEKASEVFNELP 314

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             K  ++W+ MI G    GK E A +LF +M +R++V+                      
Sbjct: 315 -QKGISSWNCMIGGLAMHGKGEAAIELFKEM-EREMVA---------------------- 350

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
                   PD +T V VL AC   G ++ GK   Q   E +     +     ++D+  + 
Sbjct: 351 --------PDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRA 402

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGE 431
           G ++ A  +  ++P N     +  +++     HG   LGE
Sbjct: 403 GLLEEARKLINEMPVN-PDAGVLGALVGACRIHGNTELGE 441


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/719 (37%), Positives = 428/719 (59%), Gaps = 47/719 (6%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           L  ++ +  ++L++C+++    +IH   +  G    +  ++ LI  ++       +  +R
Sbjct: 149 LTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR---YKAVGNAR 205

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           ILF ++   ++  WN ++ GY +S + +EAL L     S G+ + ++ T   +L++C   
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEA 260

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
             F  G  IH + IK GLE +LF+ N LI  Y+ FG + +  KVF+    RDL+S+N++I
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             Y   ++P  A+ LF++M+ S IQPD  T +++ S  ++L D R  +       +  G 
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK-GW 379

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              ++ +  AV+ MYAK GL                                ++ AR +F
Sbjct: 380 FLEDITIGNAVVVMYAKLGL--------------------------------VDSARAVF 407

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGAL 361
           + +   D++SW  +ISGY+Q G  S+A+E++  ME  G I  ++ T V+VL AC   GAL
Sbjct: 408 NWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 467

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             G +LH + ++N ++  ++F+ T++ DMY KCG ++ ALS+FY+IP+ + +V  +N++I
Sbjct: 468 RQGMKLHGRLLKNGLY-LDVFVVTSLADMYGKCGRLEDALSLFYQIPR-VNSVP-WNTLI 524

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
           +    HG GE ++ +F+EM   G+KPD +TFVT+L ACSH GLV+EG+  FE M  +YGI
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P ++HYGCMVD+  R G+L+ A   I+SM    ++ IW ALL+ACR+H N  +G+IA +
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            L ++EP+H  ++VLLSNM A   +WE   ++R +    G++K PGWS +E +  +  F 
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              ++HP  +E+   L  +  KLK  GYVP+   V+ DV+++EKE ++  HSE+LA+AF 
Sbjct: 705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI + +K TIRI KNLR+CGDCH   K +S+I  REI+VRD+ RFH FK G CSC D+W
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 154/550 (28%), Positives = 276/550 (50%), Gaps = 53/550 (9%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNP 71
            L   C +L+ A  +H ++V S    ++  S++L++ +   G    +  +R  F  I N 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLG---NVALARHTFDHIQNR 115

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYT-SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           +++ WN ++ GY R+ +  E +  ++  MLS G+ +P+  TFP VL +C    +   G +
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGL-TPDYRTFPSVLKAC---RTVIDGNK 171

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IHC  +KFG  +D+++  +LIH YS +  + NA  +F+    RD+ S+N +I+GY Q   
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL L   ++      D+ T V++ SACTE  D   G   H+   K+   + S + + 
Sbjct: 232 AKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKH--GLESELFVS 285

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             +I++YA+ G +   ++VF  M + +   +W+S+I  Y              +++++ L
Sbjct: 286 NKLIDLYAEFGRLRDCQKVFDRMYV-RDLISWNSIIKAY--------------ELNEQPL 330

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                            +A+ LF +M    I PD +T++++      LG +   + +   
Sbjct: 331 -----------------RAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            +    F  +I +  AV+ MYAK G +D+A +VF  +P N   +S +N+IISG AQ+G  
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTDVIS-WNTIISGYAQNGFA 431

Query: 431 ETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
             +I ++  ME  G +  +  T+V+VL ACS  G + +G +    +L  G+   +     
Sbjct: 432 SEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTS 491

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEP 547
           + D+  + GRL++A  L   +P   NSV W  L+A    H + +   +  +++LD  ++P
Sbjct: 492 LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP 550

Query: 548 DHGAHYVLLS 557
           DH     LLS
Sbjct: 551 DHITFVTLLS 560


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/637 (42%), Positives = 382/637 (59%), Gaps = 34/637 (5%)

Query: 89  PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF--I 146
           PQ +  L   +L        NF  PF L             Q+H  IIK      +    
Sbjct: 24  PQSSETLKIDLL-------RNFNSPFELR------------QVHAQIIKTNAPLSILPLT 64

Query: 147 RNALI-HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           R  L+  F   F Y     K  E       V +N+ +   A+   P  A+ LF +++   
Sbjct: 65  RVGLVCAFTPSFHYAQQIFKCVEKQKPETFV-WNSCLKALAEGDSPIDAIMLFYRLRQYD 123

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLM 263
           + PD FT  ++  AC  L D   G+  H VV K    VG  SN+ L+  ++++YA CG M
Sbjct: 124 VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK----VGFRSNLYLQNMIVHLYASCGEM 179

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
             A  +F  M   +    W+ MI+   ++G  E A  LF +M +R++ SWT+MI+GY Q 
Sbjct: 180 GEARLLFEKMP-QRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A+ LF KME  G+  +EVT+VAVL AC  LGALD G R+H+ Y     F RN+ +
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHE-YSNRHGFKRNVRI 297

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
           +  +IDMY KCG ++ A  VF ++ +  +TV  ++++I GLA HG  E ++ +F +M  +
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEE--RTVVSWSAMIGGLAMHGRAEEALRLFSDMSQV 355

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDE 502
           G++P+GVTF+ +L ACSH GL+ EG++FF SM  +YGI PQ+EHYGCMVDLL+R G L E
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           A+  I +MP   N V+W ALL ACR+H+N ++ E A + LL+L+P +  +YV+LSN+ AE
Sbjct: 416 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAE 475

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             RWE+  +VRK M D  ++K PGWS I  +G +H F+A ++SHP T++I    +++  +
Sbjct: 476 AGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEE 535

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           ++  GYVPNT  V+ D++E EK   VS HSEKLAL FGL+N+ ++  IRI KNLRIC DC
Sbjct: 536 MRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDC 595

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H AFKL+S I  REI+VRD  RFH F   +CSC D+W
Sbjct: 596 HSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 185/430 (43%), Gaps = 70/430 (16%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN- 70
           + LL +  S  +  Q+H QI+ +  N  +S   L     +         ++ +F  ++  
Sbjct: 32  IDLLRNFNSPFELRQVHAQIIKT--NAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQ 89

Query: 71  -PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            P  F+WN+ ++  +  DSP +A++L+   L +  V P+ FT   VL +C  L    +G 
Sbjct: 90  KPETFVWNSCLKALAEGDSPIDAIMLFYR-LRQYDVCPDTFTCSSVLRACLNLLDLSNGR 148

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN---------- 179
            +H  + K G   +L+++N ++H Y+  G +  A  +FE    RD+V++N          
Sbjct: 149 ILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQG 208

Query: 180 ---------------------TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
                                ++I GY Q  +   A+ LF KM+++ ++ +  T VA+ +
Sbjct: 209 DHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLA 268

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC +L    +G + H   Y N      N+ +   +I+MY KCG +  A +VF  M   ++
Sbjct: 269 ACADLGALDLGMRIHE--YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERT 325

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +WS+MI G    G+ E A +LF  M Q                               
Sbjct: 326 VVSWSAMIGGLAMHGRAEEALRLFSDMSQ------------------------------- 354

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           +GI P+ VT + +L AC  +G +  G+R       +      I     ++D+ ++ G + 
Sbjct: 355 VGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLH 414

Query: 399 TALSVFYKIP 408
            A      +P
Sbjct: 415 EAHEFILNMP 424



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 126/264 (47%), Gaps = 5/264 (1%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LFS++   N+  W +++ GY +    +EA+ L+  M   G V  N  T   VL +CA L 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLG 274

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G +IH +  + G + ++ I N LI  Y   G +  A KVFE    R +VS++ +I 
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A       AL LF  M    I+P+  TF+ +  AC+ +     G++F A + ++ G +
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
              +     ++++ ++ GL++ A      M M  +   W +++        +E A +   
Sbjct: 395 -PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 304 QMDQRDLVS---WTAMISGYSQVG 324
            + + D ++   +  + + Y++ G
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAG 477


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/710 (37%), Positives = 416/710 (58%), Gaps = 72/710 (10%)

Query: 44  QLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG 103
           QLI F  LS   +GL  +  +F  I  PN+ IWNT+ RG++ +     AL LY  M+S G
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-------- 155
           ++ PN+++FPF+L SCA+  +   G QIH H++K G + D+++  +LI  Y+        
Sbjct: 61  LL-PNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDA 119

Query: 156 --IF---------------------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             +F                     GYINNA K+F+    +D+VS+N +I+GY +     
Sbjct: 120 HKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFK 179

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL L++ M  + ++PD  T V + SAC +     +G+Q H+ +  +    GSN+ +   
Sbjct: 180 EALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDH--GFGSNIKIVNV 237

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +I++Y+KCG                                ++E A  LF  + ++D++S
Sbjct: 238 LIDLYSKCG--------------------------------EVETACGLFQGLAKKDVIS 265

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W  +I G++ +  + +AL LF +M   G  P++VTM++VL AC  LGA+D G+ +H  YI
Sbjct: 266 WNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHV-YI 324

Query: 373 ENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
              + G      L T++IDMYAKCG I+ A  VF  +    +++S +N++I G A HG  
Sbjct: 325 NKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLT--RSLSSWNAMIFGFAMHGKA 382

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGC 489
             +  +F +M   G+ PD +TFV +L ACSH G+++ G+  F SM  +Y I P++EHYGC
Sbjct: 383 NAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGC 442

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           M+DLL   G   EA  +I++MP + + VIW +LL AC++H N ++GE   Q L+ +EP++
Sbjct: 443 MIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPEN 502

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YVLLSN+ A   RW++  ++R L++D GI+K PG S IE +  +H F+   K HP+ 
Sbjct: 503 PGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRN 562

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           +EI  ML++M M ++  G+VP+T +V+ +++EE KE  + +HSEKLA+AFGLI+++    
Sbjct: 563 REIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 622

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + I KNLR+C +CH A KL+S+IY+REI+ RD  R HL K G  SC D+W
Sbjct: 623 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/700 (37%), Positives = 409/700 (58%), Gaps = 72/700 (10%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
           +GL  +  +F  I  PN+ IWNT++RG++ S  P  AL +Y  M+S G + PN+++FPF+
Sbjct: 12  DGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL-PNSYSFPFL 70

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS----- 170
           L SCA+  +F+ G QIH  ++K G   D ++  +LI  Y+  G + +A KVF+ S     
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 171 --------------------------LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
                                       RD+VS+N +I GY +      AL LF++M  +
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGL 262
            ++PD  T V++ SAC +     +G+Q H+ V  +    G  S++ +  A+I++Y+KC  
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC-- 248

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                                         G +E A  LF+ +  +D+VSW  +I GY+ 
Sbjct: 249 ------------------------------GDVETAFGLFEGLSCKDVVSWNTLIGGYTH 278

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RN 380
              + +AL LF +M   G  P++VT+++VL AC  LGA+D G+ +H  YI+  + G    
Sbjct: 279 TNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHV-YIDKKLKGVTNE 337

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
             L T++IDMYAKCG I+ A  VF  +    +++S +N++I G A HG    +  +F  M
Sbjct: 338 TSLRTSLIDMYAKCGDIEAAHQVFNSML--YRSLSSWNAMIFGFAMHGRANAAFDLFSRM 395

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGR 499
               ++PD +TFV +L ACSH GL++ G+Q F+SM  +Y + P++EHYGCM+DLL   G 
Sbjct: 396 RGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGL 455

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
             EA  +I +MP + + VIW +LL AC+ H N ++ E   QKL+ +EP++   YVLLSN+
Sbjct: 456 FKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNI 515

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A   RWE+  +VR +++  G++K PG S IE +  +H F+   K HP+ +EI  ML++M
Sbjct: 516 YATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEM 575

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
            ++L+ AG+ P+T +V+ +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C
Sbjct: 576 DVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 635

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +CH A KL+S+IY+REI+ RD  RFH F+ G CSC D+W
Sbjct: 636 RNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 280/785 (35%), Positives = 441/785 (56%), Gaps = 80/785 (10%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNG-LFRSR 62
           V +H S + LLE C S+K+  Q    I+ +GL + H+  ++L+S F    CK G L  + 
Sbjct: 75  VYKHPSAI-LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLF----CKFGSLHEAA 129

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F  I++    +++T+++GY+R+ S  +A+  +  M   G V P  + F ++L  C   
Sbjct: 130 RVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDG-VRPVVYNFTYLLKVCGDN 188

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           +  + G +IHC +I  G   ++F    +++ Y+    +  A+K+F+    RDLV +NT+I
Sbjct: 189 ADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTII 248

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV------- 235
           +GYAQ      AL L  +MQ+   +PD+ T V++  A  ++   RIG+  H         
Sbjct: 249 SGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFE 308

Query: 236 -----------VYKNLGCVGSNMLL------KTAV-----INMYAKCGLMNMAERVFSTM 273
                      +Y   G VG+  L+      KT V     I+ Y + G    A  +F  M
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKM 368

Query: 274 --------------------------------------GMSKSTAAWSSMISGYTREGKI 295
                                                  +    +  +S+IS Y++  ++
Sbjct: 369 MDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRV 428

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           + A ++F+ +  + LVSW AMI GY+Q G  ++A++ F KM+   I PD  TMV+V+ A 
Sbjct: 429 DIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPAL 488

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             L  L   K +H   I   +  +N+F+ TA++DMYAKCG++ TA  +F  + +  + V+
Sbjct: 489 AELSVLPQAKWIHGLVIRTCL-DKNVFVATALVDMYAKCGAVHTARKLFDMMDE--RHVT 545

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N++I G   HGLG+ ++ +F +M+   +KP+ VTF+ VL ACSH GLVEEG Q+F SM
Sbjct: 546 TWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSM 605

Query: 476 L-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
             +YG++P M+HYG MVDLL R  RL+EA+  IQ MP +    ++ A+L ACR+H+N ++
Sbjct: 606 KKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVEL 665

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
           GE A  ++ DL+PD G ++VLL+N+ A    W++  +VR  M+  GIQK PGWS +E   
Sbjct: 666 GEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQN 725

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F +   SHPQ K+I   L+ +  ++K+AGY+P+T   V DV++  KE +++ HSEK
Sbjct: 726 EVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDT-NSVHDVEDVVKEQLLNSHSEK 784

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AF L+N+    TI + KNLR+CGDCH A K +S + +REI+VRD  RFH FK G CS
Sbjct: 785 LAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCS 844

Query: 715 CMDFW 719
           C D+W
Sbjct: 845 CGDYW 849


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/714 (37%), Positives = 416/714 (58%), Gaps = 49/714 (6%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
            LL+ C   +SL+Q  ++H  I+ SG+  N ++ ++ L+S +A  G    L  +R +F  
Sbjct: 52  GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT-LLSMYAKCG---SLTDARRVFDS 107

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I + NI  W  ++  +   +   EA   Y +M   G   P+  TF  +LN+       + 
Sbjct: 108 IRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQL 166

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H  I++ GLE +  +  +L+  Y+  G I+ A  +F+    +++V++  LI GYAQ
Sbjct: 167 GQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQ 226

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL L   MQ + + P+  TF ++   CT       GK+ H  + ++    G  +
Sbjct: 227 QGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQS--GYGREL 284

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  ++I MY KCG                                 +E AR+LF  +  
Sbjct: 285 WVVNSLITMYCKCG--------------------------------GLEEARKLFSDLPH 312

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+V+WTAM++GY+Q+G   +A+ LF +M+  GI PD++T  +VL +C     L  GKR+
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL-AQ 426
           HQQ + +  +  +++L +A++ MYAKCGS+D A  VF ++ +  + V  + +II+G  AQ
Sbjct: 373 HQQLV-HAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSE--RNVVAWTAIITGCCAQ 429

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQME 485
           HG    ++  F +M+  G+KPD VTF +VL AC+H GLVEEG++ F SM L+YGIKP +E
Sbjct: 430 HGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 489

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C VDLL R G L+EA  +I SMP+     +W ALL+ACR+H + + GE A + +L L
Sbjct: 490 HYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL 549

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +PD    YV LS++ A   R+E+A +VR++M+   + K PG S+IE +G +H F    KS
Sbjct: 550 DPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 609

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP++++I + L  +T ++K  GYVP+T  V+ DVDEE+KE ++  HSE+LA+ +GL+ + 
Sbjct: 610 HPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTP 669

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IRI KNLR+CGDCH A K +S++  REI+ RDA RFH F  G CSC DFW
Sbjct: 670 PGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 210/422 (49%), Gaps = 45/422 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           SLL    + + L+   ++H +IV +GL       + L+  +A  G    + ++R++F ++
Sbjct: 153 SLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCG---DISKARVIFDRL 209

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+  W  L+ GY++      AL L  +M  +  V+PN  TF  +L  C   ++ + G
Sbjct: 210 PEKNVVTWTLLIAGYAQQGQVDVALELLETM-QQAEVAPNKITFASILQGCTTPAALEHG 268

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            ++H +II+ G   +L++ N+LI  Y   G +  A K+F     RD+V++  ++ GYAQ+
Sbjct: 269 KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQL 328

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM- 247
                A+ LFR+MQ   I+PD  TF ++ ++C+     + GK+ H    + L   G N+ 
Sbjct: 329 GFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIH----QQLVHAGYNLD 384

Query: 248 -LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG-YTREGKIERARQLFDQM 305
             L++A+++MYAKCG M+ A  VF+ M   ++  AW+++I+G   + G+   A + FDQM
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHGRCREALEYFDQM 443

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            ++                               GI PD+VT  +VL AC  +G ++ G+
Sbjct: 444 KKQ-------------------------------GIKPDKVTFTSVLSACTHVGLVEEGR 472

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           +  +    +      +   +  +D+  + G ++ A +V   +P  +   S++ +++S   
Sbjct: 473 KHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMP-FIPGPSVWGALLSACR 531

Query: 426 QH 427
            H
Sbjct: 532 VH 533


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/614 (43%), Positives = 389/614 (63%), Gaps = 17/614 (2%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH--FYSIFGYINNAHKVFEGSL 171
           F L SC  ++  K   Q H H+I  GL       N L+     S FG ++ AH++F+   
Sbjct: 20  FSLESCKSMNQIK---QTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIP 76

Query: 172 ARDLVSYNTLINGYAQVKEPC-PALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIG 229
             D+  YNT+I  +A +      ++ +F  M + S   P+ +TFV +F AC        G
Sbjct: 77  KPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEG 136

Query: 230 KQF--HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           +Q   HA+    +G + SN+ +  A+I MYA  GL++ A RVF    + +   +W+ MI 
Sbjct: 137 EQIRVHAI---KIG-LESNLFVTNAMIRMYANWGLVDEARRVFD-WSLDQDLYSWNIMIG 191

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           GY   G+I RA+++FD+M +RD+VSWT +I+GY QVG F +AL+LF +M   G  P+E T
Sbjct: 192 GYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFT 251

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           + + L AC  L ALD G+ +H  YI+      N  L  +++DMYAKCG ID A  VF+  
Sbjct: 252 LASALAACANLVALDQGRWIHV-YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDE 310

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
                 V  +N++I G A HG  + +I +F +M++  + P+ VTFV +L ACSHG LVEE
Sbjct: 311 YGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEE 370

Query: 468 GKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+ +F+SM + YGI+P++EHYGCMVDLL R G L EA   + +MP   ++ IW ALL AC
Sbjct: 371 GRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGAC 430

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H++ + G+  G+ + +L+ DH   +VLL+N+ + + +W+EA+ VR+ ++ SG +K PG
Sbjct: 431 RIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPG 490

Query: 587 WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV-DEEEKE 645
            S IE NG  H+FL   +SHPQTK++ L L +MT KLK+AGYVP   +V+ D+ DEE+KE
Sbjct: 491 CSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKE 550

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
           T +S HSEKLA+AFGLIN+     IRI KNLR+C DCH A K +S++Y+REI+VRD IR+
Sbjct: 551 TALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRY 610

Query: 706 HLFKKGNCSCMDFW 719
           H FK G CSC D+W
Sbjct: 611 HHFKDGFCSCKDYW 624



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/534 (27%), Positives = 233/534 (43%), Gaps = 113/534 (21%)

Query: 15  LESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           LESCKS+ Q  Q H  ++ +GL  H I++++L+     S     L  +  LF QI  P++
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSF-GSLSYAHQLFDQIPKPDV 80

Query: 74  FIWNTLMRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           FI+NT+++ ++    S   ++ ++ SM+      PN +TF FV  +C        G QI 
Sbjct: 81  FIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIR 140

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--------------------- 171
            H IK GLE +LF+ NA+I  Y+ +G ++ A +VF+ SL                     
Sbjct: 141 VHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIG 200

Query: 172 ----------ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
                      RD+VS+ T+I GY QV     AL LF +M  +   P+ FT  +  +AC 
Sbjct: 201 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 260

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF-STMGMSKSTA 280
            L     G+  H  VY +   +  N  L  ++++MYAKCG ++ A +VF    G+     
Sbjct: 261 NLVALDQGRWIH--VYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVW 318

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            W++MI GY   GK + A  LF+QM                             K+E   
Sbjct: 319 PWNAMIGGYAMHGKSKEAIDLFEQM-----------------------------KVEK-- 347

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + P++VT VA+L AC            H + +E    GR  F                 +
Sbjct: 348 VSPNKVTFVALLNACS-----------HGKLVEE---GRGYF----------------KS 377

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           ++  Y I   ++    +  ++  L + G L E    VF     M + PD   +  +L AC
Sbjct: 378 MASSYGIEPEIEH---YGCMVDLLGRSGLLKEAEETVFN----MPMAPDATIWGALLGAC 430

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV---DLLARDGRLDEAYGLIQSM 510
                +E G++  + +         +H GC V   +L +  G+ DEA  + Q +
Sbjct: 431 RIHKDIERGQRIGKIIKEL----DSDHIGCHVLLANLYSASGQWDEAKAVRQKI 480



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R++ +F ++   ++  W T++ GY +    +EAL L+  ML  G   PN FT    L +C
Sbjct: 201 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTG-PPPNEFTLASALAAC 259

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF--EGSLARDLVS 177
           A L +   G  IH +I K  ++ +  +  +L+  Y+  G I+ A KVF  E  L   +  
Sbjct: 260 ANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWP 319

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N +I GYA   +   A+ LF +M+   + P+  TFVA+ +AC+       G+ +   + 
Sbjct: 320 WNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMA 379

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
            + G +   +     ++++  + GL+  AE     M M+     W +++        IER
Sbjct: 380 SSYG-IEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIER 438

Query: 298 AR---QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            +   ++  ++D   +     + + YS  G + +A  +  K+E  G
Sbjct: 439 GQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSG 484


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 419/708 (59%), Gaps = 42/708 (5%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C +L    +IH      G   ++  ++ LI  ++  G   G+ RS  LF  +   +
Sbjct: 224 VLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGF-TGIARS--LFDDMPFRD 280

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G  ++ +  +AL +   M  +GI   N  T   +L  C +L    +   IH
Sbjct: 281 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-KMNFVTVVSILPVCPQLGDISTAMLIH 339

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            ++IK GLEFDLF+ NALI+ Y+ FG + +A K F+     D+VS+N++I  Y Q  +P 
Sbjct: 340 LYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPV 399

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A   F KMQ +  QPD  T V++ S   +  D +  +  H  + +  G +  ++++  A
Sbjct: 400 TAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRR-GWLMEDVVIGNA 458

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           V++MYAK GL++ A +V                                F+ +  +D++S
Sbjct: 459 VVDMYAKLGLLDSAHKV--------------------------------FEIILVKDVIS 486

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W  +I+GY+Q G  S+A+E++  ME    I P++ T V++L A   +GAL  G R+H + 
Sbjct: 487 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRV 546

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+  +   ++F+ T +ID+Y KCG +  A+S+FY++P+  ++   +N+IIS    HG  E
Sbjct: 547 IKTNLH-LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ--ESSVTWNAIISCHGIHGHAE 603

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ +F EM   G+KPD VTFV++L ACSH G VEEGK  F  M  YGIKP ++HYGCMV
Sbjct: 604 KTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMV 663

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G L+ AYG I+ MP   ++ IW ALL ACR+H N ++G+ A  +L +++  +  
Sbjct: 664 DLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVG 723

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
           +YVLLSN+ A   +WE   +VR L  + G++K PGWS IE N  +  F    +SHP+ KE
Sbjct: 724 YYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKE 783

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L+ +T K+KS GY+P+   V+ DV+E+EKE +++ HSE+LA+AFG+I++  K  IR
Sbjct: 784 IYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIR 843

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I KNLR+CGDCH A K +S I +REI+VRD+ RFH FK G CSC D+W
Sbjct: 844 IFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 157/573 (27%), Positives = 280/573 (48%), Gaps = 48/573 (8%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           L +S      A  +H  +V +G    I  S++L++ +A  G    +  SR  F QI   +
Sbjct: 125 LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLG---DVSLSRCTFDQIPQKD 181

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           ++ WN+++  Y  +    EA+  +  +L    + P+ +TFP VL +C  L     G +IH
Sbjct: 182 VYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRRIH 238

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
           C   K G ++++F+  +LIH YS FG+   A  +F+    RD+ S+N +I+G  Q     
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 298

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL +  +M+   I+ +  T V++   C +L D       H  V K+   +  ++ +  A
Sbjct: 299 QALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKH--GLEFDLFVSNA 356

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +INMYAK G +  A + F  M ++    +W+S+I+ Y             +Q D  D V+
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAAY-------------EQND--DPVT 400

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                           A   F KM+  G  PD +T+V++             + +H   +
Sbjct: 401 ----------------AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIM 444

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
                  ++ +  AV+DMYAK G +D+A  VF  I   +K V  +N++I+G AQ+GL   
Sbjct: 445 RRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIL--VKDVISWNTLITGYAQNGLASE 502

Query: 433 SIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
           +I V++ M E   + P+  T+V++L A +H G +++G +    ++   +   +    C++
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLI 562

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA-KIGEIAGQKLLD-LEPDH 549
           D+  + GRL +A  L   +P ++ SV W A+++   +H +A K  ++ G+ L + ++PDH
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQES-SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 621

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
                LLS      +  EE +   +LM + GI+
Sbjct: 622 VTFVSLLSACSHSGFV-EEGKWCFRLMQEYGIK 653


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/713 (37%), Positives = 411/713 (57%), Gaps = 48/713 (6%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
            LL+ C   +SL+Q  ++H  I+ SG+  N ++ ++ L+S +A  G    L  +R +F  
Sbjct: 101 GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT-LLSMYAKCG---SLTDARRVFDG 156

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I + NI  W  ++  +   +   EA   Y +M   G   P+  TF  +LN+       + 
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQV 215

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H  I K GLE +  +  +L+  Y+  G I+ A  +F+    +++V++  LI GYAQ
Sbjct: 216 GQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQ 275

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL L  KMQ + + P+  T+ ++   CT       GK+ H  + ++    G  +
Sbjct: 276 QGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQS--GYGREI 333

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+I MY KCG                                 ++ AR+LF  +  
Sbjct: 334 WVVNALITMYCKCG--------------------------------GLKEARKLFGDLPH 361

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+V+WTAM++GY+Q+G   +A++LF +M+  GI PD++T  + L +C     L  GK +
Sbjct: 362 RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSI 421

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           HQQ + +  +  +++L +A++ MYAKCGS+D A  VF ++ +  + V  + ++I+G AQH
Sbjct: 422 HQQLV-HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSE--RNVVAWTAMITGCAQH 478

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           G    ++  F +M+  G+KPD VTF +VL AC+H GLVEEG++ F SM L+YGIKP +EH
Sbjct: 479 GRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 538

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C VDLL R G L+EA  +I +MP+     +W ALL+ACR+H + + GE A + +L L+
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLD 598

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           PD    YV LSN+ A   R+E+A +VR++M+   + K PG S+IE +G +H F    KSH
Sbjct: 599 PDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSH 658

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P+ KEI   L  +T ++K  GYVP+T  V+ DVDEE+K   +  HSE+LA+ +GL+ +  
Sbjct: 659 PEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPP 718

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IRI KNLR+CGDCH A K +S++  REI+ RDA RFH F  G CSC DFW
Sbjct: 719 GTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 196/401 (48%), Gaps = 41/401 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           SLL    + + L+   ++H +I  +GL       + L+  +A  G    + +++++F ++
Sbjct: 202 SLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCG---DISKAQVIFDKL 258

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+  W  L+ GY++      AL L   M  +  V+PN  T+  +L  C    + + G
Sbjct: 259 PEKNVVTWTLLIAGYAQQGQVDVALELLEKM-QQAEVAPNKITYTSILQGCTTPLALEHG 317

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            ++H +II+ G   ++++ NALI  Y   G +  A K+F     RD+V++  ++ GYAQ+
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL 377

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH-AVVYKNLGCVGSNM 247
                A+ LFR+MQ   I+PD  TF +  ++C+     + GK  H  +V+        ++
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL---DV 434

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            L++A+++MYAKCG M+ A  VF+ M   ++  AW++MI+G  + G+   A + F+QM +
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +                               GI PD+VT  +VL AC  +G ++ G++ 
Sbjct: 494 Q-------------------------------GIKPDKVTFTSVLSACTHVGLVEEGRKH 522

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            +    +      +   +  +D+  + G ++ A +V   +P
Sbjct: 523 FRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMP 563



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 5/167 (2%)

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL---KTVSLFNS 419
           F KRL    +  +  GR+I +             + T      ++P N    K  +L NS
Sbjct: 6   FPKRLWNSRVTQLRCGRSILMFNRYQSNVDTAFELTTPTVSHDQLPGNAGFRKVDTLANS 65

Query: 420 -IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
             +S L + G  + ++ +   M L G +     F  +L  C+    +E+G++   ++L  
Sbjct: 66  GDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKS 125

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           GI+P       ++ + A+ G L +A  +   +  D N V W A++ A
Sbjct: 126 GIQPNRYLENTLLSMYAKCGSLTDARRVFDGI-RDRNIVSWTAMIEA 171


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/645 (40%), Positives = 383/645 (59%), Gaps = 38/645 (5%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           +N L+R + R+  P++AL L+  ML    VSP+  T    + SC+R+     G  +  + 
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
            K G   D F+ N+LIH Y+  G +  AH +F     + ++++N +I GY +  +    +
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +F+ M +     D  T +++ +AC  L D  +G Q+ A   +  G + S   L TA+++
Sbjct: 258 EMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRN-LATALVD 315

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MYAKCG ++ A R+F  M  S+   AWS+MISGYT+    +R R                
Sbjct: 316 MYAKCGELDKARRLFDRM-HSRDVVAWSAMISGYTQS---DRCR---------------- 355

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
                       +AL +F +M+   ++P++VTMV+VL AC  LGAL+ GK +H  YI   
Sbjct: 356 ------------EALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVH-SYIRRK 402

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
                + L TA++D YAKCG I  A+  F  +P  ++    + ++I G+A +G    ++ 
Sbjct: 403 DLPLTVILGTALVDFYAKCGCIKDAVKAFESMP--VRNTWTWTALIKGMASNGRSREALE 460

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLL 494
           +F  M    ++P  VTF+ VL ACSHG LVEEG++ F SM  +YGI P++EHYGCMVDLL
Sbjct: 461 LFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLL 520

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G +DEAY  I++MP + N+V+WRALL+AC +H+N +IGE A ++++ L+P H  +Y+
Sbjct: 521 GRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYI 580

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LLSN  A   +W+ A  VRK M + G++K PG S IE  GT+  F A    HPQ  EI  
Sbjct: 581 LLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYE 640

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
            + +M   +K  GY+PNT     DVDE EK+  VS+HSEKLA+AFGL+ SR   TIR++K
Sbjct: 641 KVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSK 700

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+C DCH A KL+S++Y REI+VRD  RFH FK G CSC D+W
Sbjct: 701 NLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 175/386 (45%), Gaps = 41/386 (10%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LI  +A  G    +  + +LF  +    +  WN ++ GY ++   +E + ++  ML  
Sbjct: 210 NSLIHMYASCG---DVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLE- 265

Query: 103 GIVSP-NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
            + +P +  T   V  +C RL     G  I  +  + G+     +  AL+  Y+  G ++
Sbjct: 266 -VRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELD 324

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A ++F+   +RD+V+++ +I+GY Q      AL +F +MQ + + P+  T V++ SAC 
Sbjct: 325 KARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L     GK  H+ + +    +   ++L TA+++ YAKCG +  A + F +M + ++T  
Sbjct: 385 VLGALETGKWVHSYIRRKD--LPLTVILGTALVDFYAKCGCIKDAVKAFESMPV-RNTWT 441

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W+++I G    G   R+R                            +ALELF  M    I
Sbjct: 442 WTALIKGMASNG---RSR----------------------------EALELFSSMLEANI 470

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P +VT + VL AC     ++ G+R      ++      I     ++D+  + G ID A 
Sbjct: 471 EPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAY 530

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQH 427
                +P     V ++ +++S    H
Sbjct: 531 QFIRNMPIEPNAV-VWRALLSACTVH 555



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 149/303 (49%), Gaps = 8/303 (2%)

Query: 42  SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           ++ L+  +A  G    L ++R LF ++ + ++  W+ ++ GY++SD  +EAL ++  M  
Sbjct: 310 ATALVDMYAKCG---ELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQG 366

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
              V+PN+ T   VL++CA L + ++G  +H +I +  L   + +  AL+ FY+  G I 
Sbjct: 367 TE-VNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIK 425

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +A K FE    R+  ++  LI G A       AL LF  M ++ I+P   TF+ +  AC+
Sbjct: 426 DAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACS 485

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
                  G++    + ++ G +   +     ++++  + GL++ A +    M +  +   
Sbjct: 486 HGCLVEEGRRHFTSMTQDYG-ICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVV 544

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLV---SWTAMISGYSQVGGFSQALELFGKMES 338
           W +++S  T    +E   +   Q+   D     ++  + + Y+ VG +  A  +  +M+ 
Sbjct: 545 WRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKE 604

Query: 339 LGI 341
            G+
Sbjct: 605 KGV 607


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/712 (37%), Positives = 416/712 (58%), Gaps = 43/712 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L+   S  +L    ++H +++ +GL N+    + LIS +A  G    +  +R +F  +
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCG---SVRDARRVFDAM 206

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + +   W TL   Y+ S   QE+L  Y +ML +G V P+  T+  VL++C  L++ + G
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEG-VRPSRITYMNVLSACGSLAALEKG 265

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH  I++     D+ +  AL   Y   G + +A +VFE    RD++++NT+I G    
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDS 325

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   A  +F +M   C+ PD  T++A+ SAC        GK+ HA   K+ G V S++ 
Sbjct: 326 GQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLV-SDVR 383

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
              A+INMY+K G M                                + ARQ+FD+M +R
Sbjct: 384 FGNALINMYSKAGSM--------------------------------KDARQVFDRMPKR 411

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D+VSWTA++ GY+  G   ++   F KM   G+  +++T + VL+AC    AL +GK +H
Sbjct: 412 DVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIH 471

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            + ++  +F  ++ +  A++ MY KCGS++ A+ V   +  + + V  +N++I GLAQ+G
Sbjct: 472 AEVVKAGIFA-DLAVANALMSMYFKCGSVEDAIRVSEGM--STRDVVTWNTLIGGLAQNG 528

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHY 487
            G  ++  F  M+   ++P+  TFV V+ AC    LVEEG++ F SM  +YGI P  +HY
Sbjct: 529 RGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHY 588

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            CMVD+LAR G L EA  +I +MP+  ++ +W ALLAACR H N +IGE A ++ L LEP
Sbjct: 589 ACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEP 648

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
            +   YV LS + A    W +  ++RKLM + G++K PG S+IE  G +H F+A  +SHP
Sbjct: 649 QNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHP 708

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           +T+EI   L+ +T ++KS GYVP+T  V+ D+D+E KE  V +HSEKLA+A+GLI++  +
Sbjct: 709 RTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPE 768

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IR++KNLR+C DCH A K +S+I  REI+ RDA RFH FK G CSC D+W
Sbjct: 769 TPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 147/582 (25%), Positives = 274/582 (47%), Gaps = 60/582 (10%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQ 67
           + LL+SC   K L    Q+H  I+  G+  ++   + L+  +   G  N    +R LF +
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN---EARRLFDK 104

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             N ++  WN ++ GY+     QEA  L+T M  +G+  P+ FTF  +L++C+  ++   
Sbjct: 105 FSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGL-EPDKFTFVSILSACSSPAALNW 163

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H  +++ GL  +  + NALI  Y+  G + +A +VF+   +RD VS+ TL   YA+
Sbjct: 164 GREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 223

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 +L  +  M    ++P   T++ + SAC  L     GKQ HA + ++     S++
Sbjct: 224 SGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEH--HSDV 281

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + TA+  MY KCG +  A  VF  +  ++   AW++MI G    G++E A  +F +M +
Sbjct: 282 RVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340

Query: 308 R----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                D V++ A++S                                   AC   G L  
Sbjct: 341 ECVAPDRVTYLAILS-----------------------------------ACARPGGLAC 365

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H + +++ +   ++    A+I+MY+K GS+  A  VF ++PK  + V  + +++ G
Sbjct: 366 GKEIHARAVKDGLVS-DVRFGNALINMYSKAGSMKDARQVFDRMPK--RDVVSWTALVGG 422

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            A  G    S + F++M   G++ + +T++ VL ACS+   ++ GK+    ++  GI   
Sbjct: 423 YADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFAD 482

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK----IGEIAG 539
           +     ++ +  + G +++A  + + M    + V W  L+    L +N +    + +   
Sbjct: 483 LAVANALMSMYFKCGSVEDAIRVSEGMS-TRDVVTWNTLIGG--LAQNGRGLEALQKFEV 539

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
            K  ++ P+      ++S         E  RQ   +  D GI
Sbjct: 540 MKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGI 581



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 210/416 (50%), Gaps = 38/416 (9%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           +++ +  +L SC +      G Q+H HI++FG++ +++I N L+  Y   G +N A ++F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +    + +VS+N +I+GYA       A  LF  MQ   ++PD FTFV++ SAC+      
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G++ H  V +    + +N  +  A+I+MYAKCG +  A RVF  M  S+   +W+++  
Sbjct: 163 WGREVHVRVME--AGLANNATVGNALISMYAKCGSVRDARRVFDAMA-SRDEVSWTTLTG 219

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y                            SGY+Q     ++L+ +  M   G+ P  +T
Sbjct: 220 AYAE--------------------------SGYAQ-----ESLKTYHAMLQEGVRPSRIT 248

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
            + VL AC  L AL+ GK++H Q +E+     ++ ++TA+  MY KCG++  A  VF  +
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVES-EHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
           P   + V  +N++I GL   G  E +  +F  M    + PD VT++ +L AC+  G +  
Sbjct: 308 PN--RDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLAC 365

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           GK+     +  G+   +     ++++ ++ G + +A  +   MP   + V W AL+
Sbjct: 366 GKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALV 420



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 224/485 (46%), Gaps = 53/485 (10%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS---SSQLISFFALSGCKNGLFRSR 62
           + + ++L+   S  +L++  QIH QIV S   HH     S+ L   +   G    +  +R
Sbjct: 247 ITYMNVLSACGSLAALEKGKQIHAQIVES--EHHSDVRVSTALTKMYIKCG---AVKDAR 301

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F  + N ++  WNT++ G   S   +EA  ++  ML K  V+P+  T+  +L++CAR 
Sbjct: 302 EVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML-KECVAPDRVTYLAILSACARP 360

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
                G +IH   +K GL  D+   NALI+ YS  G + +A +VF+    RD+VS+  L+
Sbjct: 361 GGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALV 420

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GYA   +   +   F+KM    ++ +  T++ +  AC+     + GK+ HA V K    
Sbjct: 421 GGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVK--AG 478

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           + +++ +  A+++MY KCG +  A RV   M  ++    W+++I G  + G+        
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIRVSEGMS-TRDVVTWNTLIGGLAQNGR-------- 529

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                 G  +AL+ F  M+S  + P+  T V V+ AC     ++
Sbjct: 530 ----------------------GL-EALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVE 566

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G+R      ++            ++D+ A+ G +  A  V   +P    + +++ ++++
Sbjct: 567 EGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFK-PSAAMWGALLA 625

Query: 423 GLAQHG---LGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNY 478
               HG   +GE +       + + L+P    T+V++    +  G+  +  +  + M   
Sbjct: 626 ACRAHGNVEIGEQAAE-----QCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKER 680

Query: 479 GIKPQ 483
           G+K +
Sbjct: 681 GVKKE 685



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-- 378
           +   G+    ++   +   G   D    V +L++CV    L  GK++H+  +    FG  
Sbjct: 20  TSTDGWYAPADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILR---FGMK 76

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
            N+++   ++ +Y  CGS++ A  +F K     K+V  +N +ISG A  GLG+ +  +F 
Sbjct: 77  PNVYIINTLLKLYVHCGSVNEARRLFDKFSN--KSVVSWNVMISGYAHRGLGQEAFNLFT 134

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498
            M+  GL+PD  TFV++L ACS    +  G++    ++  G+         ++ + A+ G
Sbjct: 135 LMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCG 194

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAA 525
            + +A  +  +M    + V W  L  A
Sbjct: 195 SVRDARRVFDAMA-SRDEVSWTTLTGA 220


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 282/781 (36%), Positives = 436/781 (55%), Gaps = 76/781 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNGLF-RSRIL 64
           + LL L ++  +      IH   V +GL   +S+   + L+S++A +G   G F  +R L
Sbjct: 29  ARLLQLSQTAVNPSAGRAIHAHAVKAGL--LVSAYLCNNLLSYYARAGVGRGCFHEARRL 86

Query: 65  FSQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS---------------- 106
           F  I     N F WN+L+  Y++S    +A V++  M  +  VS                
Sbjct: 87  FDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWD 146

Query: 107 --------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
                         P+ F    VL+SCA   +   G ++H  +IK GL   + + N++++
Sbjct: 147 AVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLY 206

Query: 153 FYSIFGYINNAHKVFE--------------------GSL-----------ARDLVSYNTL 181
            Y   G    A  VFE                    G +            R +VS+N +
Sbjct: 207 MYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266

Query: 182 INGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           I GY Q      AL  F +M   S ++PD FT  ++ SAC  L   ++GKQ H+ + +  
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERAR 299
               S ++   A+I+ YAK G +  A R+     ++  +  ++++++ GY + G  ++AR
Sbjct: 327 MPYSSQIM--NALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAR 384

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           ++FD M+ RD+++WTAMI GY Q G   +A+ELF  M   G  P+  T+ AVL AC  L 
Sbjct: 385 EVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLA 444

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L +GK++H + I ++   +++ ++ A+I +YA+ GS+  A  VF +I    +TV+ + S
Sbjct: 445 YLGYGKQIHCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVT-WTS 502

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I  LAQHGLGE +I +F EM  +G+KPD VT++ V  AC+H G +++GK+++E MLN +
Sbjct: 503 MIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEH 562

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI P+M HY CMVDLLAR G L EA+  IQ MP   ++V+W +LLAACR+ +NA + E+A
Sbjct: 563 GIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELA 622

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +KLL ++PD+   Y  L+N+ +   RW +A ++ KL  D  ++K  G+S+      +H 
Sbjct: 623 AEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHV 682

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F A    HPQ   I     +M  ++K AG+VP+   V+ DVD+E KE ++S HSEKLA+A
Sbjct: 683 FGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIA 742

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGLI++  K T+RI KNLR+C DCH A K +S++  REI+VRDA RFH F+ G CSC D+
Sbjct: 743 FGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDY 802

Query: 719 W 719
           W
Sbjct: 803 W 803


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/593 (41%), Positives = 376/593 (63%), Gaps = 10/593 (1%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFY--SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
           IH H+++  L FD+F  + LI F   S    ++ A +V       +L  YN LI G +  
Sbjct: 36  IHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTS 95

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           + P  +   + K     + PD  T   +  AC +L +  +G Q H    K+      +  
Sbjct: 96  ENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKH--GFEQDFY 153

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           ++ ++++MYA  G +N A  VF  M       +W+ MI+GY R G  + AR+LFD+M +R
Sbjct: 154 VQNSLVHMYASVGDINAARSVFQRM-CRFDVVSWTCMIAGYHRCGDAKSARELFDRMPER 212

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +LV+W+ MISGY++   F +A+E F  +++ G+  +E  MV V+ +C  LGAL  G++ H
Sbjct: 213 NLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAH 272

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           +  + N +   N+ L TAV+DMYA+CG+++ A+ VF ++P+  K V  + ++I+GLA HG
Sbjct: 273 EYVMRNKL-SLNLILGTAVVDMYARCGNVEKAVMVFEQLPE--KDVLCWTALIAGLAMHG 329

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
             E ++  F EM   G  P  +TF  VL ACSH G+VE G + FESM  ++G++P++EHY
Sbjct: 330 YAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHY 389

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDLL R G+L +A   +  MP   N+ IWRALL ACR+H+N ++GE  G+ LL+++P
Sbjct: 390 GCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQP 449

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           ++  HYVLLSN+ A   +W++   +R++M D G++KPPG+S IE +G +H F    K+HP
Sbjct: 450 EYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHP 509

Query: 608 QTKEIELMLKDMTM-KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           + ++IE + +D+ + K+K AGYV NT + +FD+DEEEKE  +  HSEKLA+A+G++  R+
Sbjct: 510 EIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRA 569

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IRI KNLR+C DCH A KL+S+++  E++VRD  RFH FK+G CSCMD+W
Sbjct: 570 PTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 191/379 (50%), Gaps = 41/379 (10%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           +K L L++  L+ LLE C + +    IH  ++ + L   + ++  +  F +    N L  
Sbjct: 11  LKTLRLKNPKLV-LLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHY 69

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +  + SQI NPN+FI+N L+RG S S++P+ +   Y   L  G++ P+N T PF++ +CA
Sbjct: 70  AIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLL-PDNITHPFLVKACA 128

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L +   G Q H   IK G E D +++N+L+H Y+  G IN A  VF+     D+VS+  
Sbjct: 129 QLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTC 188

Query: 181 LINGYAQVKEPCPALWLFRKM----------------QDSCIQPDAFTF----------- 213
           +I GY +  +   A  LF +M                +++C +    TF           
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVAN 248

Query: 214 ----VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
               V + S+C  L    +G++ H  V +N   +  N++L TAV++MYA+CG +  A  V
Sbjct: 249 ETVMVGVISSCAHLGALAMGEKAHEYVMRNK--LSLNLILGTAVVDMYARCGNVEKAVMV 306

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV----SWTAMISGYSQVGG 325
           F  +   K    W+++I+G    G  E+A   F +M ++  V    ++TA+++  S  G 
Sbjct: 307 FEQLP-EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGM 365

Query: 326 FSQALELFGKME-SLGIHP 343
             + LE+F  M+   G+ P
Sbjct: 366 VERGLEIFESMKRDHGVEP 384


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/699 (38%), Positives = 418/699 (59%), Gaps = 12/699 (1%)

Query: 23  QALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
             +QIHG IV  G    +   + L+ F+A  G    L  +R +F ++   N+  W +++ 
Sbjct: 152 NGIQIHGLIVKMGYAKDLFVQNSLVHFYAECG---ELDSARKVFDEMSERNVVSWTSMIC 208

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           GY+R D  ++A+ L+  M+    V+PN+ T   V+++CA+L   ++G +++  I   G+E
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            +  + +AL+  Y     I+ A ++F+   A +L   N + + Y +      AL +F  M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            DS ++PD  + ++  S+C++L +   GK  H  V +N      N+    A+I+MY KC 
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC--NALIDMYMKCH 386

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
             + A R+F  M  +K+   W+S+++GY   G+++ A + F+ M ++++VSW  +ISG  
Sbjct: 387 RQDTAFRIFDRMS-NKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV 445

Query: 322 QVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           Q   F +A+E+F  M+S  G++ D VTM+++  AC  LGALD  K ++  YIE      +
Sbjct: 446 QGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY-YIEKNGIQLD 504

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + L T ++DM+++CG  ++A+S+F  +    + VS + + I  +A  G  E +I +F +M
Sbjct: 505 VRLGTTLVDMFSRCGDPESAMSIFNSLTN--RDVSAWTAAIGAMAMAGNAERAIELFDDM 562

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
              GLKPDGV FV  L ACSHGGLV++GK+ F SML  +G+ P+  HYGCMVDLL R G 
Sbjct: 563 IEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGL 622

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L+EA  LI+ MP + N VIW +LLAACR+  N ++   A +K+  L P+    YVLLSN+
Sbjct: 623 LEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNV 682

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A   RW +  +VR  M + G++KPPG S I+  G  H F +  +SHP+   IE ML ++
Sbjct: 683 YASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEV 742

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
           + +    G+VP+   V+ DVDE+EK  ++S HSEKLA+A+GLI+S    TIRI KNLR+C
Sbjct: 743 SQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVC 802

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
            DCH   K  S++Y REI++RD  RFH  ++G CSC DF
Sbjct: 803 SDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 271/531 (51%), Gaps = 73/531 (13%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDN-PN 72
           L++CK++ +    H  +   GL++ +S+ ++L++     G +  L  ++ +F   ++   
Sbjct: 39  LKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGT 98

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
            F++N+L+RGY+ S    EA++L+  M++ GI SP+ +TFPF L++CA+  +  +G QIH
Sbjct: 99  CFMYNSLIRGYASSGLCNEAILLFLRMMNSGI-SPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             I+K G   DLF++N+L+HFY+  G +++A KVF+    R++VS+ ++I GYA+     
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 193 PALWL-FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
            A+ L FR ++D  + P++ T V + SAC +L D   G++ +A + +N G +  N L+ +
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI-RNSG-IEVNDLMVS 275

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+++MY KC  +++A+R+F   G S      ++M S Y R+G                  
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLC-NAMASNYVRQGLTR--------------- 319

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
                           +AL +F  M   G+ PD ++M++ + +C  L  + +GK  H   
Sbjct: 320 ----------------EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYV 363

Query: 372 IENVVFGRNIFLTTAVIDMYAKC-------------------------------GSIDTA 400
           + N  F     +  A+IDMY KC                               G +D A
Sbjct: 364 LRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTVLCAC 459
              F  +P+  K +  +N+IISGL Q  L E +I VF  M+   G+  DGVT +++  AC
Sbjct: 423 WETFETMPE--KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            H G ++  K  +  +   GI+  +     +VD+ +R G  + A  +  S+
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/704 (38%), Positives = 410/704 (58%), Gaps = 72/704 (10%)

Query: 37  NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           N H + SQL+ F  LS   +GL  +  +F  I  PN  IWN + RG++ S  P  AL LY
Sbjct: 4   NTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLY 63

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             M+S G++ PN FTFPF+L SCA+  +FK G QIH H++K G + DL++  +LI  Y+ 
Sbjct: 64  VVMISLGLL-PNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQ 122

Query: 157 FGYINNAHKVFEGSLARDLVSY-------------------------------NTLINGY 185
            G + +A KVF+ S  RD+VSY                               N +I+GY
Sbjct: 123 NGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGY 182

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+      AL LF++M  + ++PD  T   + SAC +     +G+Q H+ +  N    GS
Sbjct: 183 AETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWI--NDHGFGS 240

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N+ +  A+I++Y+KCG                                ++E A +L + +
Sbjct: 241 NLKIVNALIDLYSKCG--------------------------------EVETACELLEGL 268

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             +D++SW  +I GY+ +  + +AL LF +M   G  P++VTM+++L AC  LGA+D G+
Sbjct: 269 SNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 328

Query: 366 RLH---QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            +H    + ++ VV      L T++IDMYAKCG ID A  V      N +++S +N++I 
Sbjct: 329 WIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFN-RSLSTWNAMIF 387

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIK 481
           G A HG    +  +F  M   G++PD +TFV +L ACSH G+++ G+  F SM  +Y I 
Sbjct: 388 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNIT 447

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P++EHYGCM+DLL   G   EA  +I +MP + + VIW +LL AC++H N ++GE   +K
Sbjct: 448 PKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKK 507

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP-PGWSYIEHNGTLHRFL 600
           L+ +EP++   YVLLSN+ A   +W E  ++R L++D G++K  PG S IE +  +H F+
Sbjct: 508 LIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFI 567

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              K HPQ +EI  ML++M + L+ AG+VP+T +V+ +++EE KE  + +HSEKLA+AFG
Sbjct: 568 IGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 627

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           LI+++    + I KNLR+C +CH A KL+S+IY+REI+ RD  R
Sbjct: 628 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/708 (38%), Positives = 418/708 (59%), Gaps = 42/708 (5%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C +L    +IH      G   ++  ++ LI  ++  G   G+ RS  LF  +   +
Sbjct: 224 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGF-TGIARS--LFDDMPFRD 280

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G  ++ +  +AL +   M  +GI   N  T   +L  C +L    +   IH
Sbjct: 281 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-KMNFVTVVSILPVCPQLGDISTAMLIH 339

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            ++IK GLEFDLF+ NALI+ Y+ FG + +A K F+     D+VS+N++I  Y Q  +P 
Sbjct: 340 LYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPV 399

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A   F KMQ +  QPD  T V++ S   +  D +  +  H  + +  G +  ++++  A
Sbjct: 400 TAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRR-GWLMEDVVIGNA 458

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           V++MYAK GL++ A +V                                F+ +  +D++S
Sbjct: 459 VVDMYAKLGLLDSAHKV--------------------------------FEIIPVKDVIS 486

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W  +I+GY+Q G  S+A+E++  ME    I P++ T V++L A   +GAL  G ++H + 
Sbjct: 487 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV 546

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+  +   ++F+ T +ID+Y KCG +  A+S+FY++P+  ++   +N+IIS    HG  E
Sbjct: 547 IKTNLH-LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ--ESSVTWNAIISCHGIHGHAE 603

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ +F EM   G+KPD VTFV++L ACSH G VEEGK  F  M  YGIKP ++HYGCMV
Sbjct: 604 KTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMV 663

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G L+ AY  I+ MP   ++ IW ALL ACR+H N ++G+ A  +L +++  +  
Sbjct: 664 DLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVG 723

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
           +YVLLSN+ A   +WE   +VR L  + G++K PGWS IE N  +  F    +SHP+ KE
Sbjct: 724 YYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKE 783

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L+ +T K+KS GY+P+   V+ DV+E+EKE +++ HSE+LA+AFG+I++  K  IR
Sbjct: 784 IYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIR 843

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I KNLR+CGDCH A K +S I +REI+VRD+ RFH FK G CSC D+W
Sbjct: 844 IFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 158/573 (27%), Positives = 281/573 (49%), Gaps = 48/573 (8%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           L +S      A  +H  +V +G    I  S++L++ +A  G    +  SR  F QI   +
Sbjct: 125 LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLG---DVSLSRCTFDQIPQKD 181

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           ++ WN+++  Y  +    EA+  +  +L    + P+ +TFP VL +C  L     G +IH
Sbjct: 182 VYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIH 238

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
           C   K G ++++F+  +LIH YS FG+   A  +F+    RD+ S+N +I+G  Q     
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 298

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL +  +M+   I+ +  T V++   C +L D       H  V K+   +  ++ +  A
Sbjct: 299 QALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKH--GLEFDLFVSNA 356

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +INMYAK G +  A + F  M ++    +W+S+I+ Y             +Q D  D V+
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAAY-------------EQND--DPVT 400

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                           A   F KM+  G  PD +T+V++             + +H   +
Sbjct: 401 ----------------AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIM 444

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
                  ++ +  AV+DMYAK G +D+A  VF  IP  +K V  +N++I+G AQ+GL   
Sbjct: 445 RRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIP--VKDVISWNTLITGYAQNGLASE 502

Query: 433 SIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
           +I V++ M E   + P+  T+V++L A +H G +++G +    ++   +   +    C++
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 562

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA-KIGEIAGQKLLD-LEPDH 549
           D+  + GRL +A  L   +P ++ SV W A+++   +H +A K  ++ G+ L + ++PDH
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQES-SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 621

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
                LLS      +  EE +   +LM + GI+
Sbjct: 622 VTFVSLLSACSHSGFV-EEGKWCFRLMQEYGIK 653


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/713 (37%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG------LFRSRILFS 66
           +L+++    +   QIH ++V SGL H        + F ++   NG      +  +R LF 
Sbjct: 61  SLIDNSTHKRHLDQIHNRLVISGLQH--------NGFLMTKLVNGSSNLGQICYARKLFD 112

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +   P++F+WN ++R YSR++  ++ + +Y  M   G V P+ FTFP+VL +C  L  F 
Sbjct: 113 EFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTG-VHPDGFTFPYVLKACTELLDFG 171

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
             C IH  IIK+G   D+F++N L+  Y+  G+I  A  VF+G   R +VS+ ++I+GYA
Sbjct: 172 LSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYA 231

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q  +   AL +F +M+++ ++PD    V++  A T+++D   G+  H  V K        
Sbjct: 232 QNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIK-------- 283

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                                     MG+    A   S+ + Y + G +  A+  FDQM 
Sbjct: 284 --------------------------MGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMK 317

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             +++ W AMISGY++ G   +A+ LF  M S  I PD VT+ + + A   +G+L+  + 
Sbjct: 318 TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQW 377

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +   Y+    +G +IF+ T++IDMYAKCGS++ A  VF +   + K V +++++I G   
Sbjct: 378 M-DDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDR--NSDKDVVMWSAMIMGYGL 434

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           HG G  +I ++  M+  G+ P+ VTF+ +L AC+H GLV+EG + F  M ++ I P+ EH
Sbjct: 435 HGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEH 494

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VDLL R G L EA   I  +P +    +W ALL+AC+++R   +GE A  KL  L+
Sbjct: 495 YSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLD 554

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P +  HYV LSN+ A +  W+    VR LM + G+ K  G+S IE NG L  F    KSH
Sbjct: 555 PYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSH 614

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P  KEI   L+ +  +LK  G+VP T  V+ D++ EEKE  +S+HSE++A+A+GLI++  
Sbjct: 615 PMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAP 674

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             T+RITKNLR C +CH A KL+S++  REI+VRDA RFH FK G CSC D+W
Sbjct: 675 GTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/727 (36%), Positives = 431/727 (59%), Gaps = 19/727 (2%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           ++ L  +H + +++L +C SL Q  +IH ++ +SGL+   S ++ L++ +A  G      
Sbjct: 103 LQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAK 162

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R   +F  +   +   WN ++  +S+S     AL ++  M  K  + PN+ T+  V++  
Sbjct: 163 R---MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM--KCDMKPNSTTYINVISGF 217

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           +       G +IH  I+  G + DL +  ALI+ Y   G  + A +VF+    RD+VS+N
Sbjct: 218 STPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWN 277

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I  Y Q  +   AL L++K+     +    TFV++  AC+ +     G+  H+ + + 
Sbjct: 278 VMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER 337

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG---KIE 296
              + S + + TA++NMYAKCG +  A +VF+ M  ++   AWS++I  Y   G      
Sbjct: 338 --GLDSEVAVATALVNMYAKCGSLEEARKVFNAM-KNRDAVAWSTLIGAYASNGYGKDAR 394

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRAC 355
           +AR++FD++  RD + W AMI+ Y Q G    A+++F +M  + G+ PD VT +AVL AC
Sbjct: 395 KARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEAC 454

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LG L   K LH Q  E+ +   N+ +T  +I+MYA+CGS++ A  +F    +  KTV 
Sbjct: 455 ASLGRLSEVKALHAQISESEL-ESNVVVTNTLINMYARCGSLEEAERLFAAAKE--KTVV 511

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++++  +Q+G    ++ +F+EM+L G+KPD VT+ ++L  C+HGG +E+G ++F  M
Sbjct: 512 SWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDM 571

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              +G+ P  +H+  MVDLL R GRL +A  L++SMP++ + V W   L ACR+H   ++
Sbjct: 572 AELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLEL 631

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
           GE A +++ +L+P   A Y+ +SN+ A    WE+   VRK M++ G++K PG S+IE +G
Sbjct: 632 GEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG 691

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            LH F +  K HP+T EI   L  +   +++AGYVP+T  V+ DV E EKET++ YHSEK
Sbjct: 692 KLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEK 751

Query: 655 LALAFGLINSR-SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK-GN 712
           +A+AFGL++SR S E IR+ KNLR+C DCH A K ++ I  R+I++RD  RFH F   G 
Sbjct: 752 MAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGK 811

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 812 CSCGDYW 818



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/557 (27%), Positives = 262/557 (47%), Gaps = 90/557 (16%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L    SC  + +   +H +I  S      +  + LIS +   G  + L  +R +F  +
Sbjct: 12  TVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMY---GKCDSLVDARSVFESM 68

Query: 69  D--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           D    N+  WN ++  Y+++    EALVLY  M  +G+   ++ TF  VL +C   SS  
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL-GTDHVTFVSVLGAC---SSLA 124

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +IH  +   GL+    + NAL+  Y+ FG + +A ++F+    RD  S+N +I  ++
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 187 QVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRI---GKQFHAVVYKNLGC 242
           Q  +   AL +F++M+  C ++P++ T++ + S     + P +   G++ HA +  N   
Sbjct: 185 QSGDWSGALRIFKEMK--CDMKPNSTTYINVISG---FSTPEVLPEGRKIHAEIVAN--G 237

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S++++ TA+INMY KCG  + A  VF  M   +   +W+ MI  Y + G         
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCYVQNGD-------- 288

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                  F +ALEL+ K++  G    + T V++L AC  + AL 
Sbjct: 289 -----------------------FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL------ 416
            G+ +H   +E  +    + + TA+++MYAKCGS++ A  VF  + KN   V+       
Sbjct: 326 QGRLVHSHILERGL-DSEVAVATALVNMYAKCGSLEEARKVFNAM-KNRDAVAWSTLIGA 383

Query: 417 ---------------------------FNSIISGLAQHGLGETSIAVFREME-LMGLKPD 448
                                      +N++I+   Q+G    ++ +FREM    GLKPD
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            VTF+ VL AC+  G + E K     +    ++  +     ++++ AR G L+EA  L  
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFA 503

Query: 509 SMPYDANSVIWRALLAA 525
           +   +   V W A++AA
Sbjct: 504 AAK-EKTVVSWTAMVAA 519



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 174/426 (40%), Gaps = 91/426 (21%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC--VGSNMLLKTAVINMYAKCGLMN 264
           QPD  TF+ +  +C+   D   G+  H    + + C     + ++  A+I+MY KC  + 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALH----ERIRCSRFERDTMVGNALISMYGKCDSLV 59

Query: 265 MAERVFSTMGM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
            A  VF +M    ++  +W++MI                               + Y+Q 
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMI-------------------------------AAYAQN 88

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF--GRNI 381
           G  ++AL L+ +M   G+  D VT V+VL AC  L     G+ +H     N VF  G + 
Sbjct: 89  GHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIH-----NRVFYSGLDS 140

Query: 382 F--LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           F  L  A++ MYA+ GS+  A  +F  +    +T   +N++I   +Q G    ++ +F+E
Sbjct: 141 FQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS--WNAVILAHSQSGDWSGALRIFKE 198

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI------------------- 480
           M+   +KP+  T++ V+   S   ++ EG++    ++  G                    
Sbjct: 199 MKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGS 257

Query: 481 ------------KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA---NSVIWRALLAA 525
                       K  M  +  M+    ++G   EA  L Q +  +        + ++L A
Sbjct: 258 SHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGA 317

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHG-AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           C   +    G +    +L+   D   A    L NM A+    EEAR+V   M +   +  
Sbjct: 318 CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKN---RDA 374

Query: 585 PGWSYI 590
             WS +
Sbjct: 375 VAWSTL 380



 Score = 46.6 bits (109), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           M  +PD VTF+TVLC+CS  G V EG+   E +     +        ++ +  +   L +
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 503 AYGLIQSMPYDANSVI-WRALLAA 525
           A  + +SM +   +V+ W A++AA
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAA 84


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/727 (36%), Positives = 430/727 (59%), Gaps = 19/727 (2%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           ++ L  +H + +++L +C SL Q  +IH ++ +SGL+   S ++ L++ +A  G      
Sbjct: 103 LQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAK 162

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R   +F  +   +   WN ++  +S+S     AL ++  M  K  V PN+ T+  V++  
Sbjct: 163 R---MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM--KCDVKPNSTTYINVISGF 217

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           +       G +IH  I+  G + DL +  ALI+ Y   G  + A +VF+    RD+VS+N
Sbjct: 218 STPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWN 277

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I  Y    +   AL L++K+     +    TFV++  AC+ +     G+  H+ + + 
Sbjct: 278 VMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER 337

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG---KIE 296
              + S + + TA++NMYAKCG +  A +VF+ M  ++   AWS++I  Y   G      
Sbjct: 338 --GLDSEVAVATALVNMYAKCGSLEEARKVFNAM-KNRDAVAWSTLIGAYASNGYGKDAR 394

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRAC 355
           +AR++FD++  RD +SW AMI+ Y Q G    A+++F +M  + G+ PD VT +AVL AC
Sbjct: 395 KARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEAC 454

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LG L   K LH Q  E+ +   N+ +T  +I+MYA+CGS++ A  +F    +  KTV 
Sbjct: 455 ASLGRLSEVKALHAQISESEL-ESNVVVTNTLINMYARCGSLEEAERLFAAAKE--KTVV 511

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++++  +Q+G    ++ +F+EM+L G+KPD VT+ ++L  C+HGG +E+G ++F  M
Sbjct: 512 SWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDM 571

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              + + P  +H+  MVDLL R GRL +A  L++SMP++ + V W   L ACR+H   ++
Sbjct: 572 AELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLEL 631

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
           GE A +++ +L+P   A Y+ +SN+ A    WE+   VRK M++ G++K PG S+IE +G
Sbjct: 632 GEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG 691

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            LH F +  K HP+T EI   L  +   +++AGYVP+T  V+ DV E EKET++ YHSEK
Sbjct: 692 KLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEK 751

Query: 655 LALAFGLINSR-SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK-GN 712
           +A+AFGL++SR S E IR+ KNLR+C DCH A K ++ I  R+I+VRD  RFH F   G 
Sbjct: 752 MAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGK 811

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 812 CSCGDYW 818



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 261/557 (46%), Gaps = 90/557 (16%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L    SC  + +   +H +I  S      +  + LIS +   G  + L  +R +F  +
Sbjct: 12  TVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMY---GKCDSLVDARSVFESM 68

Query: 69  D--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           D    N+  WN ++  Y+++    EALVLY  M  +G+   ++ TF  VL +C   SS  
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL-GTDHVTFVSVLGAC---SSLA 124

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +IH  +   GL+    + NAL+  Y+ FG + +A ++F+    RD  S+N +I  ++
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 187 QVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRI---GKQFHAVVYKNLGC 242
           Q  +   AL +F++M+  C ++P++ T++ + S     + P +   G++ HA +  N   
Sbjct: 185 QSGDWSGALRIFKEMK--CDVKPNSTTYINVISG---FSTPEVLPEGRKIHAEIVAN--G 237

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             +++++ TA+INMY KCG  + A  VF  M   +   +W+ MI  Y   G         
Sbjct: 238 FDTDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCYVLNGD-------- 288

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                  F +ALEL+ K++  G    + T V++L AC  + AL 
Sbjct: 289 -----------------------FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL------ 416
            G+ +H   +E  +    + + TA+++MYAKCGS++ A  VF  + KN   V+       
Sbjct: 326 QGRLVHSHILERGL-DSEVAVATALVNMYAKCGSLEEARKVFNAM-KNRDAVAWSTLIGA 383

Query: 417 ---------------------------FNSIISGLAQHGLGETSIAVFREME-LMGLKPD 448
                                      +N++I+   Q+G    ++ +FREM    GLKPD
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            VTF+ VL AC+  G + E K     +    ++  +     ++++ AR G L+EA  L  
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFA 503

Query: 509 SMPYDANSVIWRALLAA 525
           +   +   V W A++AA
Sbjct: 504 AAK-EKTVVSWTAMVAA 519



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/484 (21%), Positives = 203/484 (41%), Gaps = 88/484 (18%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC--VGSNMLLKTAVINMYAKCGLMN 264
           QPD  TF+ +  +C+   D   G+  H    + + C     + ++  A+I+MY KC  + 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALH----ERIRCSRFERDTMVGNALISMYGKCDSLV 59

Query: 265 MAERVFSTMGM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSW------ 313
            A  VF +M    ++  +W++MI+ Y + G    A  L+ +M+ +    D V++      
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 314 --------------------------TAMISGYSQVGGFSQALELFGKMES--------- 338
                                      A+++ Y++ G    A  +F  +++         
Sbjct: 120 CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 339 ---------------------LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
                                  + P+  T + V+        L  G+++H + + N  F
Sbjct: 180 ILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GF 238

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++ + TA+I+MY KCGS   A  VF K+ K  + +  +N +I     +G    ++ ++
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMKK--RDMVSWNVMIGCYVLNGDFHEALELY 296

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497
           +++++ G K    TFV++L ACS    + +G+     +L  G+  ++     +V++ A+ 
Sbjct: 297 QKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKC 356

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           G L+EA  +  +M  + ++V W  L+ A   +   K    A +K+ D     G+   +  
Sbjct: 357 GSLEEARKVFNAMK-NRDAVAWSTLIGAYASNGYGKDARKA-RKVFD---RLGSRDTISW 411

Query: 558 NMLAETYRWE----EARQVRKLMDDSGIQKPPGWSYI---EHNGTLHRFLASKKSHPQTK 610
           N +  TY        A ++ + M  +   KP   ++I   E   +L R    K  H Q  
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS 471

Query: 611 EIEL 614
           E EL
Sbjct: 472 ESEL 475



 Score = 45.8 bits (107), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           M  +PD VTF+TVLC+CS  G V EG+   E +     +        ++ +  +   L +
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 503 AYGLIQSMPYDANSVI-WRALLAA 525
           A  + +SM +   +V+ W A++AA
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAA 84


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/713 (37%), Positives = 417/713 (58%), Gaps = 19/713 (2%)

Query: 14  LLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL +C  +    + +Q+HG +V  GL   +  ++ LI F+A  G    +   R +F ++ 
Sbjct: 128 LLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACG---KVDLGRKVFDEML 184

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  W +L+ GYS  +  +EA+ L+  M+  G V PN  T    +++CA+L   + G 
Sbjct: 185 ERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVG-VEPNPVTMVCAISACAKLKDLELGK 243

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++   + + G++ +  + NAL+  Y   G +    ++F+    ++LV YNT+++ Y Q  
Sbjct: 244 KVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHG 303

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML- 248
                L +  +M     +PD  T ++  +AC +L D  +GK  HA V++N    G   L 
Sbjct: 304 LAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRN----GLERLD 359

Query: 249 -LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+I+MY KCG    A +VF +M  +K+   W+S+I+G  R+G++E A ++F +M +
Sbjct: 360 NISNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELALRIFGEMPE 418

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            +LVSW  MI    Q   F +A++L  +M++ GI  D VTMV +  AC  LGALD  K +
Sbjct: 419 SNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWI 478

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           +  YIE      ++ L TA++DM+++CG    A+ VF  + K  + VS + + I   A  
Sbjct: 479 YT-YIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEK--RDVSAWTAAIRVKAVE 535

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G  + +I +F EM    +K D   FV +L A SHGG V++G+Q F +M   +G+ PQ+ H
Sbjct: 536 GNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVH 595

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGCMVDLL R G L+EA+ L++SMP   N VIW + LAACR H+N +    A +K+  L 
Sbjct: 596 YGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLA 655

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+    +VLLSN+ A   +W +  +VR  M + G QK  G S IE +G +  F +  +SH
Sbjct: 656 PEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESH 715

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            +  +I LML+++  ++   GYVP+T  V+ DVDE+EKE ++S HSEKLA+A+GLIN+  
Sbjct: 716 TENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGK 775

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+ KNLR+C DCH   KL+S++Y REI VRD  R+H FK+G CSC DFW
Sbjct: 776 GIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 164/552 (29%), Positives = 270/552 (48%), Gaps = 74/552 (13%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP--N 72
           L++CK+L +  Q+H  ++  G+    + ++LI+     G    L  +   F + +    +
Sbjct: 29  LQTCKTLIELKQLHCNMLKKGV---FNINKLIAACVQMGTHESLNYALNAFKEDEGTKCS 85

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           ++  NTL+RGY+ S   +EA+ +Y  M+    + P+NFTFPF+L++C+++ +F  G Q+H
Sbjct: 86  LYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVH 145

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             ++K GL  DLF+ N+LIHFY+  G ++   KVF+  L R++VS+ +LINGY+ V    
Sbjct: 146 GVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAK 205

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A+ LF +M +  ++P+  T V   SAC +L D  +GK+   ++ + LG V SN L+  A
Sbjct: 206 EAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTE-LG-VKSNTLVVNA 263

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +++MY KCG M     +                                FD+   ++LV 
Sbjct: 264 LLDMYMKCGDMYAVREI--------------------------------FDEFSDKNLVM 291

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           +  ++S Y Q G   + L +  +M   G  PD+VTM++ + AC  LG L  GK  H    
Sbjct: 292 YNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVF 351

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---- 428
            N    R   ++ A+IDMY KCG  + A  VF  +    KTV  +NS+I+GL + G    
Sbjct: 352 RN-GLERLDNISNAIIDMYMKCGKREAACKVFDSMSN--KTVVTWNSLIAGLVRDGELEL 408

Query: 429 ---------------------------LGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
                                      + E +I + REM+  G+K D VT V +  AC +
Sbjct: 409 ALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGY 468

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
            G ++  K  +  +    I   M+    +VD+ +R G    A  + ++M     S  W A
Sbjct: 469 LGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSA-WTA 527

Query: 522 LLAACRLHRNAK 533
            +    +  NAK
Sbjct: 528 AIRVKAVEGNAK 539


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 431/738 (58%), Gaps = 42/738 (5%)

Query: 19  KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIW 76
           +S++QA Q+H  +  SG + H  S+  L+S    +       R  + LF ++ +   F++
Sbjct: 10  RSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLF 69

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC--QIHCH 134
           +T +R   ++ +  +  VL    +  G V    FTF FV   CA  +  ++G    +H  
Sbjct: 70  DTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAA 129

Query: 135 IIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFEGSLARD------------------- 174
            ++  L      + N LIH Y+  G  ++A + F+   A+D                   
Sbjct: 130 CLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDE 189

Query: 175 ------------LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
                       +VS+ +LI GY++   P  A++ F  M    + PD    +   SAC++
Sbjct: 190 ARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSK 249

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L +  +G+  H +V +    +  N+++  A+I+MYAKCG +  A+ VF  +G  +    W
Sbjct: 250 LKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFDAVGRGQKPEPW 307

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +++I GY + G ++ AR LFDQM  RD++++ +MI+GY   G    AL+LF +M   G+ 
Sbjct: 308 NAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMR 367

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D  T+V++L AC  LGAL  G+ LH   IE  +   +++L TA++DMY KCG +D A +
Sbjct: 368 ADNFTVVSLLTACASLGALPHGRALHAS-IEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF+++ +  + V  + ++I+GLA +G+G+ ++  F +M+  G +P  VT++ VL ACSH 
Sbjct: 427 VFHRMGE--RDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
            L++EG+  F  M + + + PQ+EHYGCM+DLLAR G LDEA  L+Q+MP   N+VIW +
Sbjct: 485 SLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGS 544

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           +L+ACR+H+N  +   A + LL L P+  A YV L N+  ++ +W +A++VR LM++ G+
Sbjct: 545 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGV 604

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G+S I   G +H+F+A+ +SHP T EI  M++++  +LKS GY P T ++  DVDE
Sbjct: 605 KKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDE 664

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           EEKE  +  HSEK+A+AFGLI+      I I KNLR+C DCH A KL+S+++ REI+VRD
Sbjct: 665 EEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRD 724

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH F+ G CSC DFW
Sbjct: 725 RSRFHHFRDGACSCNDFW 742


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/718 (37%), Positives = 424/718 (59%), Gaps = 47/718 (6%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI-- 63
           +H +   ++ +C +L    ++H  ++  G    +  ++  I F++  G     F S    
Sbjct: 141 DHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFG-----FVSLACN 195

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF  +   +I  WN ++ G+  +    EAL ++  M  K  VS ++ T   +L  C +L 
Sbjct: 196 LFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS-VSMDSVTISSLLPICVQLD 254

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
              SG  IH + IK GLEFDLF+ NALI+ Y+ FG + +A  +F     RD+VS+N+L+ 
Sbjct: 255 DIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLA 314

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            + Q K+P  AL ++ KM    + PD  T V++ S   EL +    +  H  V +    +
Sbjct: 315 AFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFL 374

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ L  A+I+MYAK G                                 I+ AR++F+
Sbjct: 375 -HDIALGNAIIDMYAKLGF--------------------------------IDSARKVFE 401

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALD 362
            +  +D++SW ++I+GYSQ G  ++A++++  M    G  P++ T V++L A   LGAL 
Sbjct: 402 GLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALK 461

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G + H Q I+N ++  +IF++T ++DMY KCG +  ALS+FY++P    +VS +N+IIS
Sbjct: 462 QGMKAHGQLIKNFLY-FDIFVSTCLVDMYGKCGKLADALSLFYEVPHQ-SSVS-WNAIIS 518

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIK 481
               HG G  ++ +F+EM+  G+KPD +TFV++L ACSH GLV+EG+  F+ M   YGI+
Sbjct: 519 CHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIR 578

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P ++HYGCMVDL  R G L++A+  +++MP   +  +W ALL ACR+H N ++       
Sbjct: 579 PSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDH 638

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           LL +E ++  +YVLLSN+ A+   WE   +VR L  D G++K PGWS IE +  +  F  
Sbjct: 639 LLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYT 698

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             ++HP+ +EI   L+++T K+KS GYVP+   V+ DV+++EKE +++ HSE+LA+AFG+
Sbjct: 699 GNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGI 758

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I++  K T++I KNLR+CGDCH A K +S+I  REI+VRD+ RFH FK G CSC D+W
Sbjct: 759 ISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 145/514 (28%), Positives = 266/514 (51%), Gaps = 45/514 (8%)

Query: 18  CKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           C  +  A Q+H  +V SG    I  S++LI+ +A  G    +  +R+ F QI   +++ W
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLG---DIPHARLTFDQIQTKDVYTW 109

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N+++  Y+R      A+  +   LS   +  +++TFP V+ +C  L     G ++HC ++
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLD---DGRKVHCLVL 166

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G E D++I  + IHFYS FG+++ A  +F+  + RD+ ++N +I+G+    +   AL 
Sbjct: 167 KLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           +F +M+   +  D+ T  ++   C +L+D   G   H    K LG +  ++ +  A+INM
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIK-LG-LEFDLFVCNALINM 284

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           YAK G +  AE +F+ M + +   +W+S+++ +              + +++ ++     
Sbjct: 285 YAKFGELRSAETIFNQMKV-RDIVSWNSLLAAF--------------EQNKKPVI----- 324

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
                       AL ++ KM S+G+ PD +T+V++      LG     + +H        
Sbjct: 325 ------------ALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCW 372

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           F  +I L  A+IDMYAK G ID+A  VF  +P  +K V  +NS+I+G +Q+GL   +I V
Sbjct: 373 FLHDIALGNAIIDMYAKLGFIDSARKVFEGLP--VKDVISWNSLITGYSQNGLANEAIDV 430

Query: 437 FREMELM-GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           +  M    G  P+  T+V++L A S  G +++G +    ++   +   +    C+VD+  
Sbjct: 431 YSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYG 490

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + G+L +A  L   +P+ + SV W A+++   LH
Sbjct: 491 KCGKLADALSLFYEVPHQS-SVSWNAIISCHGLH 523



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 138/274 (50%), Gaps = 11/274 (4%)

Query: 256 MYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++  C  +++A+++ + +   G ++S    + +I+ Y   G I  AR  FDQ+  +D+ +
Sbjct: 49  IFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYT 108

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W +MIS Y+++G F  A++ F +  S   +  D  T   V+RAC   G LD G+++H   
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLV 165

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           ++ + F  ++++  + I  Y++ G +  A ++F  +   ++ +  +N++ISG   +G   
Sbjct: 166 LK-LGFECDVYIAASFIHFYSRFGFVSLACNLFDNMM--IRDIGTWNAMISGFYLNGKVA 222

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ VF EM    +  D VT  ++L  C     +  G       +  G++  +     ++
Sbjct: 223 EALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALI 282

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           ++ A+ G L  A  +   M    + V W +LLAA
Sbjct: 283 NMYAKFGELRSAETIFNQMKV-RDIVSWNSLLAA 315


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/714 (36%), Positives = 410/714 (57%), Gaps = 45/714 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + ++LL++C   ++L+Q  ++H ++   GL+  I   + L+S +   G          +F
Sbjct: 308 AFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALE---VF 364

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + +   N+  W  ++ G+++    +EA + +  M+  GI  PN  TF  +L +C+R S+ 
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGI-EPNRVTFMSILGACSRPSAL 423

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           K G QIH  IIK G   D  +R AL+  Y+  G + +A  VFE    +++V++N +I  Y
Sbjct: 424 KQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q ++   A+  F+ +    I+PD+ TF ++ + C   +   +GK   +++ +      S
Sbjct: 484 VQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR--AGFES 541

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ ++ A+++M+  CG                                 +  A  LF+ M
Sbjct: 542 DLHIRNALVSMFVNCG--------------------------------DLMSAMNLFNDM 569

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            +RDLVSW  +I+G+ Q G    A + F  M+  G+ PD++T   +L AC    AL  G+
Sbjct: 570 PERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGR 629

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           RLH   I       ++ + T +I MY KCGSID A  VF+ +PK  K V  + S+I+G A
Sbjct: 630 RLHA-LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPK--KNVYSWTSMITGYA 686

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHG G+ ++ +F +M+  G+KPD +TFV  L AC+H GL++EG   FESM ++ I+P+ME
Sbjct: 687 QHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRME 746

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDL  R G L EA   I  M    +S +W ALL AC++H + ++ E   QK L+L
Sbjct: 747 HYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLEL 806

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +P+    YV+LSN+ A    W+E  ++RK+M D G+ K PG S+IE +G +H F +  K+
Sbjct: 807 DPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKT 866

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQ +EI   L  + M++K  GYVP+T  V+ DV++ EKE  + +HSE+LA+A+GL+ + 
Sbjct: 867 HPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTP 926

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               I I+KNLR+CGDCH A KL+S+I +R+I+ RD+ RFH FK G CSC DFW
Sbjct: 927 PLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/519 (29%), Positives = 265/519 (51%), Gaps = 43/519 (8%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFS 66
           +SSLL L    K+L    +IH  I  S +   I   + LIS +A  G  N    ++ +F 
Sbjct: 107 YSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNS---AKQIFD 163

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++ + +++ WN L+ GY +    +EA  L+  M+  G V P+ +TF ++LN+CA   +  
Sbjct: 164 EMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG-VKPDKYTFVYMLNACADAKNVD 222

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++   I+  G + DLF+  ALI+ +   G +++A KVF     RDL+++ ++I G A
Sbjct: 223 KGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLA 282

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           + ++   A  LF+ M++  +QPD   FV++  AC        GK+ HA + K +G + + 
Sbjct: 283 RHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVG-LDTE 340

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + + TA+++MY KCG M  A  VF+ +   ++  +W++MI+G+ + G++E          
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFNLVK-GRNVVSWTAMIAGFAQHGRME---------- 389

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                +A   F KM   GI P+ VT +++L AC    AL  G++
Sbjct: 390 ---------------------EAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQ 428

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H + I+   +  +  + TA++ MYAKCGS+  A +VF +I K  + V  +N++I+   Q
Sbjct: 429 IHDRIIK-AGYITDDRVRTALLSMYAKCGSLMDARNVFERISK--QNVVAWNAMITAYVQ 485

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           H   + ++A F+ +   G+KPD  TF ++L  C     +E GK     ++  G +  +  
Sbjct: 486 HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +V +    G L  A  L   MP + + V W  ++A 
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAG 583



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/517 (28%), Positives = 256/517 (49%), Gaps = 42/517 (8%)

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +D  N    N  +   S++    EA+++  S+ S  I   +  T+  +L  C +  +   
Sbjct: 64  VDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHI-QIHRQTYSSLLQLCIKHKNLGD 122

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +IH HI    ++ D+F+ N LI  Y+  G  N+A ++F+    +D+ S+N L+ GY Q
Sbjct: 123 GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQ 182

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            +    A  L  +M    ++PD +TFV M +AC +  +   G +  +++  N G   +++
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLIL-NAGW-DTDL 240

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + TA+INM+ KCG ++ A +VF+ +   +    W+SMI+G      + R RQ       
Sbjct: 241 FVGTALINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITG------LARHRQ------- 286

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                             F QA  LF  ME  G+ PD+V  V++L+AC    AL+ GKR+
Sbjct: 287 ------------------FKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRV 328

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H + ++ V     I++ TA++ MY KCGS++ AL VF  + K    VS + ++I+G AQH
Sbjct: 329 HAR-MKEVGLDTEIYVGTALLSMYTKCGSMEDALEVF-NLVKGRNVVS-WTAMIAGFAQH 385

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
           G  E +   F +M   G++P+ VTF+++L ACS    +++G+Q  + ++  G        
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--L 545
             ++ + A+ G L +A  + + +    N V W A++ A   H          Q LL   +
Sbjct: 446 TALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGI 504

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           +PD      +L N+       E  + V+ L+  +G +
Sbjct: 505 KPDSSTFTSIL-NVCKSPDALELGKWVQSLIIRAGFE 540



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 159/343 (46%), Gaps = 15/343 (4%)

Query: 7   EHSSLLALLESCKS---LKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRS 61
           + S+  ++L  CKS   L+    +   I+ +G     HI ++ L+S F   G    L  +
Sbjct: 507 DSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNA-LVSMFVNCG---DLMSA 562

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             LF+ +   ++  WNT++ G+ +    Q A   Y  M+ +  V P+  TF  +LN+CA 
Sbjct: 563 MNLFNDMPERDLVSWNTIIAGFVQHGENQFAFD-YFKMMQESGVKPDQITFTGLLNACAS 621

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
             +   G ++H  I +  L+ D+ +   LI  Y+  G I++AH VF     +++ S+ ++
Sbjct: 622 PEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSM 681

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I GYAQ      AL LF +MQ   ++PD  TFV   SAC      + G   H    K+  
Sbjct: 682 ITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLH-HFESMKDFN 740

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            +   M     +++++ + GL++ A    + M +   +  W +++        +E A ++
Sbjct: 741 -IEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKV 799

Query: 302 FD---QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
                ++D  D   +  + + Y+  G + +  ++   M   G+
Sbjct: 800 AQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGV 842


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/725 (37%), Positives = 426/725 (58%), Gaps = 75/725 (10%)

Query: 27  IHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           IH Q++ +GL N + + S+L+ F  +S   +G   +  +F  I  PN+ IWNT+ RG++ 
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           S  P  AL LY  M+S G++ P+++TFPF+L SCA+    K G QIH H++K G + D++
Sbjct: 67  SSDPVSALKLYLVMISLGLL-PDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIY 125

Query: 146 IRNALIHFYS----------IF---------------------GYINNAHKVFEGSLARD 174
           +  +LI  Y+          +F                     GYI +A K+F+    +D
Sbjct: 126 VHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKD 185

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +VS+N +I+GY +      AL LF++M   + ++PD  T V + SAC + +   +G+  H
Sbjct: 186 VVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVH 245

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           + +  N     SN+ +  A+I++Y+K G                                
Sbjct: 246 SWI--NDHGFASNLKIVNALIDLYSKFG-------------------------------- 271

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
           ++E A +LFD +  +D++SW  +I GY+ +  + +AL LF +M   G  P++VTM+++L 
Sbjct: 272 EVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 331

Query: 354 ACVGLGALDFGKRLHQQYIENVVFG--RNIF-LTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           AC  LGA+D G+ +H  YI   + G   N+  L T++IDMYAKCG ID A  VF     N
Sbjct: 332 ACAHLGAIDIGRWIHV-YINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSN 390

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            +++S +N++ISG A HG    +  +F  M + G++PD +TFV +L ACSH G+++ G+ 
Sbjct: 391 -RSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRN 449

Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            F SM   Y I P++EHYGCM+DLL   G   EA  +I +MP + + VIW +LL AC++H
Sbjct: 450 IFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIH 509

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP-PGWS 588
            N ++GE   +KL+ +EP +   YVLLSN+ A   RW E  ++R L++D G++K  PG S
Sbjct: 510 GNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCS 569

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE +  +H F+   K HPQ +EI  ML++M + L+ AG+VP+T +V+ +++EE +E  +
Sbjct: 570 SIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGAL 629

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
            +HSEKLA+AFGLI+++    + I KNLR+C +CH A KL+S+IY+REI+ RD  RF  F
Sbjct: 630 RHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHF 689

Query: 709 KKGNC 713
           + G C
Sbjct: 690 RDGVC 694


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/705 (37%), Positives = 423/705 (60%), Gaps = 43/705 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C SL    ++H  +   G    +  ++ L+  ++  G    L  +  +F  +   +
Sbjct: 130 ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV---LDVAHKVFVDMPVKD 186

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G+ ++ +   AL +   M  +G V  +  T   +L  CA+     +G  IH
Sbjct: 187 VGSWNAMISGFCQNGNAAGALGVLNRMKGEG-VKMDTITVASILPVCAQSDDVINGVLIH 245

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            H++K GL+ D+F+ NALI+ YS FG + +A  VF+    RDLVS+N++I  Y Q  +P 
Sbjct: 246 LHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPS 305

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL  F+ MQ   I+PD  T V++ S  ++L+D RI +     V +    +  ++++  A
Sbjct: 306 TALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR-EWLDKDVVIGNA 364

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++NMYAK G MN A  V                                FDQ+ ++D +S
Sbjct: 365 LVNMYAKLGYMNCAHTV--------------------------------FDQLPRKDTIS 392

Query: 313 WTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W  +++GY+Q G  S+A++ +  ME      P++ T V+++ A   +GAL  G ++H + 
Sbjct: 393 WNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL 452

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+N ++  ++F+ T +ID+Y KCG ++ A+S+FY+IP++  T   +N+II+ L  HG GE
Sbjct: 453 IKNSLY-LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRD--TSVPWNAIIASLGIHGRGE 509

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            ++ +F++M    +K D +TFV++L ACSH GLV+EG++ F+ M   YGIKP ++HYGCM
Sbjct: 510 EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCM 569

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G L++AY L+++MP   ++ IW ALL+AC+++ NA++G +A  +LL+++ ++ 
Sbjct: 570 VDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENV 629

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
            +YVLLSN+ A T +WE   +VR L  D G++K PGWS +        F    ++HP+  
Sbjct: 630 GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYT 689

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           EI   LK ++ K+KS GYVP+   V  D++E+EKE +++ HSE+LA+AFG+I++  +  I
Sbjct: 690 EIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPI 749

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           RI KNLR+CGDCH A K +S I  REI+VRD+ RFH FK G CSC
Sbjct: 750 RIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 256 MYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++  C  +N  +++ + +   G S++    + +I+ Y   G I  +R  FD + ++++ S
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87

Query: 313 WTAMISGYSQVGGFSQALELFGKMESL----GIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           W ++IS Y + G + +A+    ++ S+     + PD  T   +L+ACV L  +D GK++H
Sbjct: 88  WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--VD-GKKVH 144

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +  + F  ++F+  +++ +Y++ G +D A  VF  +P  +K V  +N++ISG  Q+G
Sbjct: 145 -CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMP--VKDVGSWNAMISGFCQNG 201

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               ++ V   M+  G+K D +T  ++L  C+    V  G      +L +G+   +    
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE--IAGQKLLDLE 546
            ++++ ++ GRL +A  +   M    + V W +++AA   + +         G +L  + 
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEV-RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIR 320

Query: 547 PD 548
           PD
Sbjct: 321 PD 322


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/701 (38%), Positives = 410/701 (58%), Gaps = 70/701 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F+ I+N N F+WN ++R Y +++SP  A  LY SMLS   +  +N+T+P ++ +C+
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSN-YLGADNYTYPLLIQACS 89

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              S     Q+H H++K G + D+++RN LI+ +S+   + +A +VF  S   D VS+N+
Sbjct: 90  IRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNS 149

Query: 181 LINGYAQVKEPCPALWLFRKMQD------------------------------------- 203
           ++ GY ++     A  ++ +M +                                     
Sbjct: 150 ILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTW 209

Query: 204 ----SCIQPDAF------TFVAM---------------FSACTELNDPRIGKQFHAVVYK 238
               +C Q +        TFV M                SAC  L    +GK  H++  K
Sbjct: 210 SALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK 269

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
            +G   S + L+ A+I MY+KCG + +A ++F    +     +W+SMISGY +   ++ A
Sbjct: 270 -IG-TESYINLQNALIYMYSKCGDIMVARKLFDEAYL-LDLISWNSMISGYLKCNLVDNA 326

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           + +FD M ++D+VSW++MISGY+Q   F + L LF +M+  G  PDE T+V+V+ AC  L
Sbjct: 327 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 386

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            AL+ GK +H  YI+      N+ L T +IDMY KCG ++TAL VFY + +  K +S +N
Sbjct: 387 AALEQGKWVH-AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE--KGISTWN 443

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
           ++I GLA +GL E+S+ +F  M+   + P+ +TF+ VL AC H GLV+EG+  F SM+ +
Sbjct: 444 ALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHD 503

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           + I+P ++HYGCMVDLL R G+L EA  L+  MP   +   W ALL AC+ H ++++G  
Sbjct: 504 HKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRR 563

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
            G+KL++L+PDH   +VLLSN+ A   +W++  ++R +M    + K PG S IE NG +H
Sbjct: 564 VGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIH 623

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            FLA  K+HP    IE ML +M MKLK  GY P+  +V+ DVDEEEKE+ +  HSEKLA+
Sbjct: 624 EFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAI 683

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           AFGLIN      IRI KNLRIC DCH A KL+S+ + R+I+
Sbjct: 684 AFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 202/427 (47%), Gaps = 70/427 (16%)

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
           F +I+   ++F      +   +N +I  Y Q   P  A  L++ M  + +  D +T+  +
Sbjct: 25  FIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLL 84

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
             AC+        KQ H  V K LG   S++ ++  +IN ++ C  M  A RVF+   + 
Sbjct: 85  IQACSIRRSEWEAKQVHNHVLK-LG-FDSDVYVRNTLINCFSVCSNMTDACRVFNESSVL 142

Query: 277 KSTAAWSSMISGYTREGKIERAR-------------------------------QLFDQM 305
            S  +W+S+++GY   G +E A+                               +LFD+M
Sbjct: 143 DSV-SWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEM 201

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            ++D+V+W+A+I+ + Q   + +A+  F  M  +G+  DEV  V+ L AC  L  ++ GK
Sbjct: 202 LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGK 261

Query: 366 RLH--------QQYIE-------------NVVFGRNIFLTTAVIDM---------YAKCG 395
            +H        + YI              +++  R +F    ++D+         Y KC 
Sbjct: 262 LIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCN 321

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            +D A ++F  +P+  K V  ++S+ISG AQ+ L + ++A+F+EM++ G KPD  T V+V
Sbjct: 322 LVDNAKAIFDSMPE--KDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 379

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA----YGLIQSMP 511
           + AC+    +E+GK     +   G+   +     ++D+  + G ++ A    YG+I+   
Sbjct: 380 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 439

Query: 512 YDANSVI 518
              N++I
Sbjct: 440 STWNALI 446



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 216/479 (45%), Gaps = 75/479 (15%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +S+LA      ++++A  I+ Q+    +   I+S+ +I  F + G    +  +  LF ++
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSI---IASNSMIVLFGMRGL---VVEACKLFDEM 201

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++  W+ L+  + +++  +EA+  +  M   G++          L++CA L     G
Sbjct: 202 LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVS-ALSACANLLVVNMG 260

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYS--------------------------IFGY--- 159
             IH   +K G E  + ++NALI+ YS                          I GY   
Sbjct: 261 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 320

Query: 160 --INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
             ++NA  +F+    +D+VS++++I+GYAQ       L LF++MQ S  +PD  T V++ 
Sbjct: 321 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 380

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC  L     GK  HA + +N   +  N++L T +I+MY KCG +  A  VF  M + K
Sbjct: 381 SACARLAALEQGKWVHAYIKRN--GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEK 437

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
             + W+++I G    G +E                                +L++F  M+
Sbjct: 438 GISTWNALILGLAMNGLVE-------------------------------SSLDMFSNMK 466

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
              + P+E+T + VL AC  +G +D G+      I +     N+     ++D+  + G +
Sbjct: 467 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 526

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
             A  +  ++P     V+ + +++    +HG  E    V R  +L+ L+PD   F  +L
Sbjct: 527 QEAEELLNRMPMT-PDVATWGALLGACKKHGDSEMGRRVGR--KLIELQPDHDGFHVLL 582


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/699 (37%), Positives = 404/699 (57%), Gaps = 50/699 (7%)

Query: 29   GQIVHS-------GLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
            GQIVHS        L+  IS   L+  ++  G      +   +F +I++P++  W+ ++ 
Sbjct: 349  GQIVHSLAIRIGCELDEFISCC-LVDMYSKCGLAGDALK---VFVRIEDPDVVSWSAIIT 404

Query: 82   GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
               +    +EA  ++  M   G++ PN FT   ++++   L     G  IH  + K+G E
Sbjct: 405  CLDQKGQSREAAEVFKRMRHSGVI-PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFE 463

Query: 142  FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            +D  + NAL+  Y   G + +  +VFE +  RDL+S+N L++G+   +     L +F +M
Sbjct: 464  YDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQM 523

Query: 202  QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
                  P+ +TF+++  +C+ L+D  +GKQ HA + KN   +  N  + TA+++MYAK  
Sbjct: 524  LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN--SLDGNDFVGTALVDMYAKNR 581

Query: 262  LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
             +                                E A  +F+++ +RDL +WT +++GY+
Sbjct: 582  FL--------------------------------EDAETIFNRLIKRDLFAWTVIVAGYA 609

Query: 322  QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            Q G   +A++ F +M+  G+ P+E T+ + L  C  +  LD G++LH   I+    G ++
Sbjct: 610  QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSG-DM 668

Query: 382  FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            F+ +A++DMYAKCG ++ A  VF  +     TVS +N+II G +QHG G  ++  F  M 
Sbjct: 669  FVASALVDMYAKCGCVEDAEVVFDGLVSR-DTVS-WNTIICGYSQHGQGGKALKAFEAML 726

Query: 442  LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
              G  PD VTF+ VL ACSH GL+EEGK+ F S+   YGI P +EHY CMVD+L R G+ 
Sbjct: 727  DEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKF 786

Query: 501  DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
             E    I+ M   +N +IW  +L AC++H N + GE A  KL +LEP+  ++Y+LLSNM 
Sbjct: 787  HEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMF 846

Query: 561  AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
            A    W++   VR LM   G++K PG S++E NG +H FL+   SHP+ +EI L L+D+ 
Sbjct: 847  AAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLH 906

Query: 621  MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
             KL S GY PNT  V+ +V + EK+ ++ YHSE+LALAF L+++ +++TIRI KNLRICG
Sbjct: 907  QKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICG 966

Query: 681  DCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   K +SEI  +E++VRD   FH FK G+CSC +FW
Sbjct: 967  DCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 245/520 (47%), Gaps = 51/520 (9%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLN--HHISSSQLISFFALSGCKNGLFRSRIL 64
           ++S +L    S   L +   IHGQ++ SG+N   H+ +S L++ +A  G  N   +   +
Sbjct: 130 QYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNS-LVNVYAKCGSANYACK---V 185

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F +I   ++  W  L+ G+        A+ L+  M  +G V  N FT+   L +C+    
Sbjct: 186 FGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREG-VEANEFTYATALKACSMCLD 244

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G Q+H   IK G   DLF+ +AL+  Y+  G +  A +VF     ++ VS+N L+NG
Sbjct: 245 LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNG 304

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +AQ+ +    L LF +M  S I    FT   +   C    + R G+  H++  + +GC  
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIR-IGC-E 362

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            +  +   +++MY+KCGL   A +VF  +       +WS++I+                 
Sbjct: 363 LDEFISCCLVDMYSKCGLAGDALKVFVRI-EDPDVVSWSAIITC---------------- 405

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +DQ+               G   +A E+F +M   G+ P++ T+ +++ A   LG L +G
Sbjct: 406 LDQK---------------GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG 450

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +H   +    F  +  +  A++ MY K GS+     VF +   N   +S +N+++SG 
Sbjct: 451 ESIH-ACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVF-EATTNRDLIS-WNALLSGF 507

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
             +   +T + +F +M   G  P+  TF+++L +CS    V+ GKQ    ++   +    
Sbjct: 508 HDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGND 567

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
                +VD+ A++  L++A  +        N +I R L A
Sbjct: 568 FVGTALVDMYAKNRFLEDAETIF-------NRLIKRDLFA 600



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 148/292 (50%), Gaps = 11/292 (3%)

Query: 10  SLLALLESCKSLKQ---ALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFR-SRIL 64
           + +++L SC SL       Q+H QIV + L+ +    + L+  +A    KN     +  +
Sbjct: 534 TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYA----KNRFLEDAETI 589

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F+++   ++F W  ++ GY++    ++A+  +  M  +G V PN FT    L+ C+R+++
Sbjct: 590 FNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG-VKPNEFTLASSLSGCSRIAT 648

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             SG Q+H   IK G   D+F+ +AL+  Y+  G + +A  VF+G ++RD VS+NT+I G
Sbjct: 649 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 708

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y+Q  +   AL  F  M D    PD  TF+ + SAC+ +     GK+    + K  G + 
Sbjct: 709 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG-IT 767

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
             +     ++++  + G  +  E     M ++ +   W +++      G IE
Sbjct: 768 PTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 819


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/760 (36%), Positives = 412/760 (54%), Gaps = 78/760 (10%)

Query: 30  QIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSP 89
           Q +H  LN    + QL   F +    N  +R  +   +  + N  I + L+  Y +++ P
Sbjct: 50  QELHINLN---ETQQLHGHF-IKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCP 105

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
            +A  +Y  M        +NF  P VL +C  + SF  G ++H  ++K G   D+F+ NA
Sbjct: 106 ADAAKIYAYMRGTD-TEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNA 164

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           LI  YS  G +  A  +F+    +D+VS++T+I  Y +      AL L R M    ++P 
Sbjct: 165 LIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPS 224

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM------------- 256
               +++     EL D ++GK  HA V +N  C  S + L TA+I+M             
Sbjct: 225 EIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRV 284

Query: 257 ------------------YAKCGLMNMAERVFSTM------------------------- 273
                             Y  C  +N   R+F  M                         
Sbjct: 285 FDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGAL 344

Query: 274 -------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
                        G + S    ++ I  Y + G +  AR +FD    +DL+ W+AMIS Y
Sbjct: 345 ELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSY 404

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +Q     +A ++F  M   GI P+E TMV++L  C   G+L+ GK +H  YI+      +
Sbjct: 405 AQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHS-YIDKQGIKGD 463

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + L T+ +DMYA CG IDTA  +F +     + +S++N++ISG A HG GE ++ +F EM
Sbjct: 464 MILKTSFVDMYANCGDIDTAHRLFAEATD--RDISMWNAMISGFAMHGHGEAALELFEEM 521

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
           E +G+ P+ +TF+  L ACSH GL++EGK+ F  M++ +G  P++EHYGCMVDLL R G 
Sbjct: 522 EALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGL 581

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           LDEA+ LI+SMP   N  ++ + LAAC+LH+N K+GE A ++ L LEP    + VL+SN+
Sbjct: 582 LDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNI 641

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A   RW +   +R+ M D GI K PG S IE NG LH F+   + HP  K++  M+ +M
Sbjct: 642 YASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEM 701

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             KL+ AGY P+   V+ ++D+E+K + ++YHSEKLA+A+GLI++     IRI KNLR+C
Sbjct: 702 REKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVC 761

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH A KLLS+IY REI+VRD  RFH FK+G+CSC D+W
Sbjct: 762 DDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 150/291 (51%), Gaps = 25/291 (8%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHS-GLNHHISSSQLIS--FFALSGCKNGLFRSRILFS 66
           ++L+L++ C +   AL++ G+++H+  L +  + S +++  F  + G    +  +R +F 
Sbjct: 330 TMLSLVKECGT-AGALEL-GKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFD 387

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
              + ++ +W+ ++  Y++++   EA  ++  M   GI  PN  T   +L  CA+  S +
Sbjct: 388 SFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGI-RPNERTMVSLLMICAKAGSLE 446

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G  IH +I K G++ D+ ++ + +  Y+  G I+ AH++F  +  RD+  +N +I+G+A
Sbjct: 447 MGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFA 506

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVY-------- 237
                  AL LF +M+   + P+  TF+    AC+     + GK+ FH +V+        
Sbjct: 507 MHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKV 566

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           ++ GC          ++++  + GL++ A  +  +M M  + A + S ++ 
Sbjct: 567 EHYGC----------MVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAA 607


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/780 (34%), Positives = 434/780 (55%), Gaps = 72/780 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILF 65
           ++ LL L ++  +      IH + V +GL  + ++ ++ L  +   +G   GL  +R LF
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 66  SQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS----------------- 106
            +I     N+F WN+L+  +++S    +A  ++  M  +  VS                 
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 107 -------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153
                        P  FT   VL+SCA   +   G ++H  ++K GL   + + N++++ 
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 154 Y----------SIF---------------------GYINNAHKVFEGSLARDLVSYNTLI 182
           Y          ++F                     G ++ A  +FE    R +VS+N +I
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMI 268

Query: 183 NGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            GY Q      AL LF +M  +S + PD FT  ++ SAC  L + RIGKQ HA + +   
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE- 327

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFS-TMGMSKSTAAWSSMISGYTREGKIERARQ 300
            +  N  +  A+I+ YAK G +  A R+   +M    +  ++++++ GY + G +E AR+
Sbjct: 328 -MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +F  M+ RD+V+WTAMI GY Q G   +A++LF  M + G  P+  T+ AVL  C  L  
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD+GK++H + I ++   R+  ++ A+I MYA+ GS   A  +F ++    +T++ + S+
Sbjct: 447 LDYGKQIHCRAIRSL-LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT-WTSM 504

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I  LAQHG GE ++ +F EM   G++PD +T+V VL ACSH G V EGK++++ + N + 
Sbjct: 505 IVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQ 564

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I P+M HY CMVDLLAR G   EA   I+ MP + +++ W +LL+ACR+H+NA++ E+A 
Sbjct: 565 IAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAA 624

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +KLL ++P++   Y  ++N+ +   RW +A ++ K   +  ++K  G+S+      +H F
Sbjct: 625 EKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVF 684

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            A    HPQ   +  M   M  ++K AG+VP+   V+ DVD+E KE ++S HSEKLA+AF
Sbjct: 685 GADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAF 744

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI++  K T+R+ KNLR+C DCH A K +S++  REI+VRDA RFH F+ G CSC D+W
Sbjct: 745 GLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/668 (37%), Positives = 399/668 (59%), Gaps = 50/668 (7%)

Query: 64  LFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           LF++  D  +++ WN+L+   +R     E+L  + S + K  + PN  TFP  + SC+ L
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAF-SWMRKLDIKPNRSTFPCAIKSCSAL 95

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
               SG Q H   + FG E DLF+ +ALI  YS  G ++NA  +F+    R++V++ +LI
Sbjct: 96  FDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155

Query: 183 NGYAQVKEPCPALWLFRKM---------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
            GY Q  +   AL +F++          ++     D+   +++ SAC+ +++  + +  H
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVH 215

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            V  K                                  +G+ K     ++++  Y + G
Sbjct: 216 GVAIK----------------------------------VGLDKVMGVENTLLDAYAKCG 241

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF-GKMESLGIHPDEVTMVAVL 352
           ++  +R++FD M ++D+VSW +MI+ Y+Q G  + A E+F G +++ G   +EVT+  +L
Sbjct: 242 EVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLL 301

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC   GAL  G  LH Q I+ + +  N+ + T++IDMY KCG  + A + F  + +  K
Sbjct: 302 LACAHEGALRVGMCLHDQVIK-MGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKE--K 358

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + ++I+G   HG    ++ VF +M   G+KP+ +TF++VL ACSH G +EEG ++F
Sbjct: 359 NVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWF 418

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            +M + Y ++P +EHYGCMVDLL R G + EAY LI+SM    + V+W +LLAACR+H++
Sbjct: 419 NAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKD 478

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++ EI+ ++L  L+P +  +YVLL+N+ A+  RW++  ++R L+ D G+ KPPG+S +E
Sbjct: 479 VELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVE 538

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
             G +H FL   K HPQ ++I   L+++++KL+ AGYVPN   V+ DVDEEEKE +V  H
Sbjct: 539 LKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVH 598

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFG++NS    TI + KNLR+CGDCH   KL+S+I  REI+VRDA RFH FK G
Sbjct: 599 SEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDG 658

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 659 LCSCGDYW 666



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 215/471 (45%), Gaps = 55/471 (11%)

Query: 1   MKRLVLE--HSSLLALLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L ++   S+    ++SC +L       Q H Q +  G    +  SS LI  ++  G 
Sbjct: 73  MRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCG- 131

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML---SKGI-----VS 106
              L  +R+LF +I   NI  W +L+ GY ++D   EAL+++   L   S+G       S
Sbjct: 132 --KLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTS 189

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
            ++     VL++C+R+S+      +H   IK GL+  + + N L+  Y+  G ++ + KV
Sbjct: 190 VDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKV 249

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELND 225
           F+    +D+VS+N++I  YAQ      A  +F  M +    + +  T   +  AC     
Sbjct: 250 FDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGA 309

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
            R+G   H  V K +G V +N+++ T++I+MY KCG   MA   F  M   K+  +W++M
Sbjct: 310 LRVGMCLHDQVIK-MGYV-NNVIMATSIIDMYCKCGQAEMARNAFDGM-KEKNVRSWTAM 366

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I+GY                           + G+++     +AL++F +M   G+ P+ 
Sbjct: 367 IAGYG--------------------------MHGFAR-----EALDVFYQMIWAGVKPNY 395

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           +T ++VL AC   G L+ G R              +     ++D+  + G I  A ++  
Sbjct: 396 ITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLI- 454

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           K  K  +   L+ S+++    H   +  +A     EL  L P    +  +L
Sbjct: 455 KSMKVRRDFVLWGSLLAACRIH--KDVELAEISARELFKLDPSNCGYYVLL 503



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 151/332 (45%), Gaps = 31/332 (9%)

Query: 10  SLLALLESCKSLKQ---ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +++++L +C  +     +  +HG  +  GL+  +   + L+  +A  G    +  SR +F
Sbjct: 194 AMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCG---EVSLSRKVF 250

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  WN+++  Y+++    +A  ++  ML  G    N  T   +L +CA   + 
Sbjct: 251 DDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGAL 310

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  +H  +IK G   ++ +  ++I  Y   G    A   F+G   +++ S+  +I GY
Sbjct: 311 RVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGY 370

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG-KQFHAVVY------- 237
                   AL +F +M  + ++P+  TF+++ +AC+       G + F+A+ +       
Sbjct: 371 GMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPG 430

Query: 238 -KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            ++ GC          ++++  + G +  A  +  +M + +    W S+++       +E
Sbjct: 431 VEHYGC----------MVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVE 480

Query: 297 ----RARQLFDQMDQRDLVSWTAMISGYSQVG 324
                AR+LF ++D  +   +  + + Y+  G
Sbjct: 481 LAEISARELF-KLDPSNCGYYVLLANIYADAG 511


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 416/713 (58%), Gaps = 47/713 (6%)

Query: 14  LLESC---KSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           LL++C   K ++   ++H  +  S    N  + ++++I+ +++ G  +    SR++F ++
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSD---SRMVFDKL 167

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F WN ++  Y+R++  ++A+ +++ ++S     P+NFT P V+ +CA L     G
Sbjct: 168 RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 227

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA-HKVFEGSLARDLVSYNTLINGYAQ 187
             IH    K  L  D+F+ NALI  Y   G +  A  +VF+    + + S+N L+ GYAQ
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +P  AL L+ +M DS + PD FT  ++  AC+ +     G++ H    +N        
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN-------- 339

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                     G++       S++S Y   GK   A+ LFD M+ 
Sbjct: 340 --------------------------GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 373

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R LVSW  MI+GYSQ G   +A+ LF +M S GI P E+ ++ V  AC  L AL  GK L
Sbjct: 374 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  +        +IF+++++IDMYAK G I  +  +F ++ +  K V+ +N II+G   H
Sbjct: 434 HC-FALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE--KDVASWNVIIAGYGIH 490

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G G+ ++ +F +M  +GLKPD  TF  +L ACSH GLVE+G ++F  MLN + I+P++EH
Sbjct: 491 GRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEH 550

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VD+L R GR+D+A  LI+ MP D +S IW +LL++CR+H N  +GE    KLL+LE
Sbjct: 551 YTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 610

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+   +YVL+SN+ A + +W++ R+VR  M D G+QK  G S+IE  G +H FL   +  
Sbjct: 611 PEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEML 670

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P+ +E+    + + +K+ S GY P+T  V+ D++EE+K  ++  HSEKLA++FGL+N+  
Sbjct: 671 PELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAK 730

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +R+ KNLRICGDCH A K +S++  R+I+VRD  RFH F+ G CSC D+W
Sbjct: 731 GLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 165/338 (48%), Gaps = 7/338 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           SLL      KSL    +IHG  + +GL   +     IS  +L  C    F +++LF  ++
Sbjct: 315 SLLLACSRMKSLHYGEEIHGFALRNGLA--VDPFIGISLLSLYICCGKPFAAQVLFDGME 372

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + ++  WN ++ GYS++  P EA+ L+  MLS GI  P       V  +C++LS+ + G 
Sbjct: 373 HRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI-QPYEIAIMCVCGACSQLSALRLGK 431

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++HC  +K  L  D+F+ +++I  Y+  G I  + ++F+    +D+ S+N +I GY    
Sbjct: 432 ELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHG 491

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL LF KM    ++PD FTF  +  AC+       G ++   +  NL  +   +  
Sbjct: 492 RGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML-NLHNIEPKLEH 550

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFDQMD 306
            T V++M  + G ++ A R+   M     +  WSS++S     G +   E+      +++
Sbjct: 551 YTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELE 610

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                ++  + + ++  G +     + G+M+ +G+  D
Sbjct: 611 PEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKD 648



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEV----TMVAVLRACVGLGALDFGKRLHQQYI 372
           I    + G   +AL+ F + ES  +  D       M  +L+AC     ++ G+RLH+   
Sbjct: 74  IKKLCESGNLKEALD-FLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVS 132

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
            +  F  +  L T +I MY+ CGS   +  VF K+ +  K +  +N+I+S   ++ L E 
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR--KNLFQWNAIVSAYTRNELFED 190

Query: 433 SIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           ++++F E+  +   KPD  T   V+ AC+  GL++ G
Sbjct: 191 AMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLG 225


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/712 (37%), Positives = 417/712 (58%), Gaps = 46/712 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           LL + +    A Q+H   +  GL      +S  L+  +   G     +R+   F ++ + 
Sbjct: 77  LLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA---FDEMRHR 133

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++  WN ++ G  R+    EA+ L+  M+ +G V+ +  T   VL  C  L        +
Sbjct: 134 DVPAWNAMLSGLCRNARAAEAVGLFGRMVMEG-VAGDAVTVSSVLPMCVLLGDRALALAM 192

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H + +K GL+ +LF+ NA+I  Y   G +    KVF+G  +RDLV++N++I+G+ Q  + 
Sbjct: 193 HLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQV 252

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             A+ +F  M+DS + PD  T +++ SA  +  D   G+  H  + +    VG +++   
Sbjct: 253 ASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG-DIIAGN 311

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+++MYAK                                  KIE A+++FD M  RD V
Sbjct: 312 AIVDMYAKLS--------------------------------KIEAAQRMFDSMPVRDAV 339

Query: 312 SWTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           SW  +I+GY Q G  S+A+ ++  M+   G+ P + T V+VL A   LGAL  G R+H  
Sbjct: 340 SWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHAL 399

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            I+  +   ++++ T VID+YAKCG +D A+ +F + P+  ++   +N++ISG+  HG G
Sbjct: 400 SIKTGL-NLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPR--RSTGPWNAVISGVGVHGHG 456

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
             ++++F +M+  G+ PD VTFV++L ACSH GLV++G+ FF  M   YGIKP  +HY C
Sbjct: 457 AKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYAC 516

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVD+  R G+LD+A+  I++MP   +S IW ALL ACR+H N ++G++A Q L +L+P +
Sbjct: 517 MVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKN 576

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS--HP 607
             +YVL+SNM A+  +W+   +VR L+    +QK PGWS IE   +++ F +  +   HP
Sbjct: 577 VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHP 636

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q +EI+  L D+  K++S GYVP+   V+ DV+E+EKE +++ HSE+LA+AFG+IN+  +
Sbjct: 637 QHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPR 696

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             + I KNLR+CGDCH A K +S+I  REI+VRD+ RFH FK G CSC DFW
Sbjct: 697 TPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 153/334 (45%), Gaps = 11/334 (3%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSG--LNHHISSSQLISFFA-LSGCKNGLFRS 61
           VL   SL + +  C  +     +H  +V  G  +   I+ + ++  +A LS  +     +
Sbjct: 271 VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEA----A 326

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           + +F  +   +   WNTL+ GY ++    EA+ +Y  M     + P   TF  VL + + 
Sbjct: 327 QRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSH 386

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L + + G ++H   IK GL  D+++   +I  Y+  G ++ A  +FE +  R    +N +
Sbjct: 387 LGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAV 446

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+G         AL LF +MQ   I PD  TFV++ +AC+       G+ F  ++    G
Sbjct: 447 ISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYG 506

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER---A 298
            +         +++M+ + G ++ A      M +   +A W +++      G +E    A
Sbjct: 507 -IKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVA 565

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
            Q   ++D +++  +  M + Y++VG +    E+
Sbjct: 566 SQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEV 599


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/698 (37%), Positives = 408/698 (58%), Gaps = 72/698 (10%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
           +GL  +  +F  I  PN  IWNT++RG++ S  P  +L LY  M+S G++ PN++TFPF+
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLL-PNSYTFPFL 70

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L SCA+  +F  G QIH  ++K G + DL++  +LI  Y     + +A+KVF+ S  RD+
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 176 VSYNTLINGYA---------QVKEPCP----------------------ALWLFRKMQDS 204
           VSY  LI GYA         ++ +  P                      AL LF +M   
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            ++PD  T+V + SAC       +G+Q H+ V  +     SN+ +  A+I++Y+KCG   
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDH--GFDSNLKIVNALIDLYSKCG--- 245

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                                        ++E A  LF  +  +D++SW  +I GY+ + 
Sbjct: 246 -----------------------------EVETACGLFQGLSYKDVISWNTLIGGYTHMN 276

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIF 382
            + +AL LF +M   G  P++VTM++VL AC  LGA+D G+ +H  YI+  + G      
Sbjct: 277 LYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHV-YIDKRLKGVTNASS 335

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L T++IDMYAKCG I+ A  VF  +    K++S +N++I G A HG  + S  +F  M  
Sbjct: 336 LRTSLIDMYAKCGDIEAAHQVFNSMLH--KSLSSWNAMIFGFAMHGRADASFDLFSRMRK 393

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLD 501
           +G++PD +TFV +L ACSH G+++ G+  F SM  +Y + P++EHYGCM+DLL   G   
Sbjct: 394 IGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 453

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA  +I +M  + + VIW +LL AC++H N ++ E   Q L+ +EP++ + Y+LLSN+ A
Sbjct: 454 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYA 513

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
              RWE+  ++R L++   ++K PG S IE +  +  F+   K HPQ +EI  ML++M +
Sbjct: 514 SAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEV 573

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
            L+ AG+VP+T +V+ +++EE KE  + +HSEKLA+AFGLI+++    + I KNLR+C +
Sbjct: 574 LLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRN 633

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A KLLS+IY+REI+ RD  RFH F+ G CSC D+W
Sbjct: 634 CHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 241/522 (46%), Gaps = 104/522 (19%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHI--------------------------SSSQ 44
           LL+SC   K+  +  QIHGQ++  G +  +                          S   
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 45  LISFFAL---SGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           ++S+ AL      +  +  ++ LF +I   ++  WN ++ GY+ +   +EAL L+  M+ 
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM- 188

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           K  V P+  T+  VL++CA   S + G Q+H  +   G + +L I NALI  YS  G + 
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A  +F+G   +D++S+NTLI GY  +     AL LF++M  S   P+  T +++  AC 
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L    IG+  H  + K L  V +   L+T++I+MYAKCG +  A +VF++M + KS ++
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSS 367

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W++MI G+   G   RA   FD                            LF +M  +GI
Sbjct: 368 WNAMIFGFAMHG---RADASFD----------------------------LFSRMRKIGI 396

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            PD++T V +L AC   G LD G+ + +   ++                           
Sbjct: 397 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD--------------------------- 429

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
              YK+   L+    +  +I  L   GL + +  +   ME   ++PDGV + ++L AC  
Sbjct: 430 ---YKMTPKLEH---YGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKM 480

Query: 462 GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDE 502
            G VE  + F ++++   I+P+    Y  + ++ A  GR ++
Sbjct: 481 HGNVELAESFAQNLIK--IEPENPSSYILLSNIYASAGRWED 520


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/755 (36%), Positives = 428/755 (56%), Gaps = 51/755 (6%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           ++H+    L  +  SL Q  Q H  I+ +GL N    +++L+S +A + C      + ++
Sbjct: 14  VQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMC---FADATLV 70

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
              +  PN+F ++TL+  +S+      AL  ++ ML++G++ P+N   P  + +CA LS+
Sbjct: 71  LDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM-PDNRVLPSAVKACAGLSA 129

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            K   Q+H      G + D F++++L+H Y     I +AH+VF+     D+VS++ L+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 185 YAQVKEPCPALWLFRKMQDSCIQP-----------------------------------D 209
           YA+      A  LF +M DS +QP                                   D
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T  ++  A  +L D  +G   H  V K  G V S+  + +A+I+MY KC   +   +V
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQ-GLV-SDKCVSSALIDMYGKCSCTSEMSQV 307

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERA----RQLFDQMDQRDLVSWTAMISGYSQVGG 325
           F  M       + ++ I G +R G++E +    RQL DQ  + ++VSWT+MI+  SQ G 
Sbjct: 308 FDQMD-HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGR 366

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +ALELF +M+  G+ P+ VT+  +L AC  + AL  GK  H   +   +   ++++ +
Sbjct: 367 DIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGI-STDVYVGS 425

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A+IDMYAKCG I  +   F  IP   K +  +N++I+G A HG  + ++ +F  M+  G 
Sbjct: 426 ALIDMYAKCGRIQASRICFDGIPT--KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ 483

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAY 504
           KPD ++F  VL ACS  GL EEG  +F SM + YGI+ ++EHY CMV LL+R G+L++AY
Sbjct: 484 KPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
            +I+ MP + ++ +W ALL++CR+H N  +GE+A +KL +LEP +  +Y+LLSN+ A   
Sbjct: 544 AMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKG 603

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
            W E  +VR +M + G++K PG S+IE    +H  LA  KSHPQ  +I   L  ++M++K
Sbjct: 604 MWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMK 663

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
             GY P    V+ DV+E++KE ++  HSEKLA+ FGL+N+     +++ KNLRICGDCH+
Sbjct: 664 KLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHV 723

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             K +S   RREI VRD  RFH FK+G CSC D+W
Sbjct: 724 VIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/694 (38%), Positives = 405/694 (58%), Gaps = 70/694 (10%)

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
           R Y +++SP  A  LY SMLS   +  +N+T+P ++ +C+   S     Q+H H++K G 
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSN-YLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGF 244

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           + D+++RN LI+ +S+   + +A +VF  S   D VS+N+++ GY ++     A  ++ +
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 304

Query: 201 MQD-----------------------------------------SCIQPDAF------TF 213
           M +                                         +C Q +        TF
Sbjct: 305 MPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTF 364

Query: 214 VAM---------------FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           V M                SAC  L    +GK  H++  K +G   S + L+ A+I MY+
Sbjct: 365 VGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK-IG-TESYINLQNALIYMYS 422

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG + +A ++F    +     +W+SMISGY +   ++ A+ +FD M ++D+VSW++MIS
Sbjct: 423 KCGDIMVARKLFDEAYL-LDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMIS 481

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           GY+Q   F + L LF +M+  G  PDE T+V+V+ AC  L AL+ GK +H  YI+     
Sbjct: 482 GYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVH-AYIKRNGLT 540

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
            N+ L T +IDMY KCG ++TAL VFY + +  K +S +N++I GLA +GL E+S+ +F 
Sbjct: 541 INVILGTTLIDMYMKCGCVETALEVFYGMIE--KGISTWNALILGLAMNGLVESSLDMFS 598

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARD 497
            M+   + P+ +TF+ VL AC H GLV+EG+  F SM+ ++ I+P ++HYGCMVDLL R 
Sbjct: 599 NMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRA 658

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           G+L EA  L+  MP   +   W ALL AC+ H ++++G   G+KL++L+PDH   +VLLS
Sbjct: 659 GKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLS 718

Query: 558 NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
           N+ A   +W++  ++R +M    + K PG S IE NG +H FLA  K+HP    IE ML 
Sbjct: 719 NIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLV 778

Query: 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           +M MKLK  GY P+  +V+ DVDEEEKE+ +  HSEKLA+AFGLIN      IRI KNLR
Sbjct: 779 EMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLR 838

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           IC DCH A KL+S+ + R+I+VRD  RFH F++G
Sbjct: 839 ICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 217/479 (45%), Gaps = 75/479 (15%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +S+LA      ++++A  I+ Q+    +   I+S+ +I  F + G    +  +  LF ++
Sbjct: 283 NSILAGYIEIGNVEEAKHIYHQMPERSI---IASNSMIVLFGMRGL---VVEACKLFDEM 336

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++  W+ L+  + +++  +EA+  +  M   G++  +       L++CA L     G
Sbjct: 337 LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV-DEVVAVSALSACANLLVVNMG 395

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYS--------------------------IFGY--- 159
             IH   +K G E  + ++NALI+ YS                          I GY   
Sbjct: 396 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 455

Query: 160 --INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
             ++NA  +F+    +D+VS++++I+GYAQ       L LF++MQ S  +PD  T V++ 
Sbjct: 456 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 515

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC  L     GK  HA + +N   +  N++L T +I+MY KCG +  A  VF  M + K
Sbjct: 516 SACARLAALEQGKWVHAYIKRNGLTI--NVILGTTLIDMYMKCGCVETALEVFYGM-IEK 572

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
             + W+++I G    G +E                                +L++F  M+
Sbjct: 573 GISTWNALILGLAMNGLVE-------------------------------SSLDMFSNMK 601

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
              + P+E+T + VL AC  +G +D G+      I +     N+     ++D+  + G +
Sbjct: 602 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 661

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
             A  +  ++P     V+ + +++    +HG  E    V R  +L+ L+PD   F  +L
Sbjct: 662 QEAEELLNRMPMT-PDVATWGALLGACKKHGDSEMGRRVGR--KLIELQPDHDGFHVLL 717


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/712 (37%), Positives = 412/712 (57%), Gaps = 44/712 (6%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + L+S +A SG    L  +R +F+++   +   W  ++ G +R     EA+ ++  M++ 
Sbjct: 100 NSLLSLYAKSG---RLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTD 156

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G+ SP  FT   VL+SCA   +   G ++H  ++K GL   + + N++++ Y   G    
Sbjct: 157 GL-SPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAET 215

Query: 163 AHKVFEG----------------------SLA---------RDLVSYNTLINGYAQVKEP 191
           A  VFE                        LA         R +VS+N +I GY Q    
Sbjct: 216 ARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLN 275

Query: 192 CPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN-LGCVGSNMLL 249
             ALW F +M   S + PD FT  ++ SAC  L    IGKQ HA + ++ +  +G    +
Sbjct: 276 AKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQ---V 332

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQR 308
             A+I+MYAK G +  A  V     M+  +  ++++++ GY + G ++ AR++FD M  R
Sbjct: 333 TNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNR 392

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D+V+WTAMI GY Q G   +A+ELF  M   G  P+  T+ AVL  C  L  L++GK++H
Sbjct: 393 DVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIH 452

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            + I ++   ++  ++ +++ MYA+ GS+  A  VF ++    +TV+ + S+I  LAQHG
Sbjct: 453 CKAIRSLQ-EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVT-WTSMIVALAQHG 510

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
           LGE ++ +F EM  +G+KPD +TFV VL AC+H G V+EGK++F+ + + +GI P+M HY
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHY 570

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            CMVDLLAR G   EA   IQ MP + +++ W +LL+ACR+H+NA + E+A +KLL ++P
Sbjct: 571 ACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDP 630

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
            +   Y  LSN+ +   RW +A ++ K   D  ++K  G+S+      +H F A    HP
Sbjct: 631 GNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHP 690

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q   +      M   +K AG+VP+   V+ DVD+E KE ++S HSEKLA+AFGL+++  K
Sbjct: 691 QRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEK 750

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            T+RI KNLR+C DCH A K +S++  REI++RDA RFH FK G CSC D+W
Sbjct: 751 TTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 217/473 (45%), Gaps = 38/473 (8%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           ++F  N+L+  Y+  G + +A  VF     RD VS+  ++ G  +V     A+ +F  M 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              + P  FT   + S+C       +G++ H+ V K LG + S + +  +V+NMY KCG 
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVK-LG-LSSCVPVANSVLNMYGKCGD 212

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
              A  VF  M   +S ++W++M+S     G+++ A  LF+ M  R +VSW A+I+GY+Q
Sbjct: 213 AETARAVFERMP-ERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQ 271

Query: 323 VGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            G  ++AL  F +M S   + PDE T+ +VL AC  LG +  GK++H  YI         
Sbjct: 272 NGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVH-AYILRSRMPYIG 330

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKTVSL------------------------ 416
            +T A+I MYAK GS++ A  V  + +  +L  +S                         
Sbjct: 331 QVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMS 390

Query: 417 ------FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
                 + ++I G  Q+G  + ++ +FR M   G +P+  T   VL  C+    +E GKQ
Sbjct: 391 NRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQ 450

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH- 529
                +    +        +V + AR G L  A  +   + +   +V W +++ A   H 
Sbjct: 451 IHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510

Query: 530 -RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
                +G       + ++PD      +LS      +  E  R  ++L D  GI
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGI 563



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 168/348 (48%), Gaps = 46/348 (13%)

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGS----NMLLKTAVINMYAKCGLMNMAERVFS 271
           +   C    +P  G+  HA   K  G + S    N LL           G    A R+F 
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVK-AGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFD 87

Query: 272 TM-GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
            +    ++   W+S++S Y + G++  AR +F +M +RD VSWT M+ G ++VG F +A+
Sbjct: 88  EIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAI 147

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
           ++F  M + G+ P + T+  VL +C    A   G+++H  ++  +     + +  +V++M
Sbjct: 148 KMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVH-SFVVKLGLSSCVPVANSVLNM 206

Query: 391 YAKCGSIDTALSVFYKIPKNL-----------------------------KTVSLFNSII 421
           Y KCG  +TA +VF ++P+                               +T+  +N++I
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266

Query: 422 SGLAQHGLGETSIAVF-REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           +G  Q+GL   ++  F R +    + PD  T  +VL AC++ G+V  GKQ       Y +
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA----YIL 322

Query: 481 KPQMEHYG----CMVDLLARDGRLDEAYGLI-QSMPYDANSVIWRALL 523
           + +M + G     ++ + A+ G ++ A G++ Q++  D N + + ALL
Sbjct: 323 RSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALL 370



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 188/411 (45%), Gaps = 24/411 (5%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L+++     S++ A  +  Q V + LN    ++ L  +  L   K+    +R +F  +
Sbjct: 334 NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKH----AREMFDVM 389

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            N ++  W  ++ GY ++    EA+ L+  M+  G   PN++T   VL+ CA L+  + G
Sbjct: 390 SNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSG-PEPNSYTVAAVLSVCASLACLEYG 448

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-DLVSYNTLINGYAQ 187
            QIHC  I+   E    + N+++  Y+  G +  A +VF+    R + V++ ++I   AQ
Sbjct: 449 KQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQ 508

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF +M    ++PD  TFV + SACT +     GK++   +    G V   M
Sbjct: 509 HGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIV-PEM 567

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---YTREGKIERARQLFDQ 304
                ++++ A+ GL + A+     M +     AW S++S    +      E A +    
Sbjct: 568 SHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLS 627

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +D  +  +++A+ + YS  G ++ A +++ + +   +  +            G      G
Sbjct: 628 IDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKE-----------TGFSWTHIG 676

Query: 365 KRLHQQYIENVVFGR--NIFLTTAVI-DMYAKCGSIDTALSVFYKIPKNLK 412
            R+H    ++V+  +   ++ T A + D   K G +    SV + +   LK
Sbjct: 677 NRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELK 727


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/611 (43%), Positives = 381/611 (62%), Gaps = 12/611 (1%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI-HFYSIFGYINNAHKVFEGSLA 172
           F+L+SC    SF+   Q+H  +I  GL       N L+    SIF  I+ AH VF+    
Sbjct: 6   FLLSSC---KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQ 62

Query: 173 RDLVSYNTLINGYA-QVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGK 230
            DL  YNT+I   A        +   FR + ++  + P+ ++F   F  C        G+
Sbjct: 63  PDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGE 122

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           Q      K LG + +N+ +  A+I MY     +  A +VF     ++   +W+ M+SGY 
Sbjct: 123 QVRVHAIK-LG-LENNLFVTNALIGMYVNLDFVVDARKVFD-WSPNRDMYSWNIMLSGYA 179

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           R GK++ ARQLFD+M ++D+VSWT MISG  QVG F +AL++F  M + G+ P+E T+ +
Sbjct: 180 RLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLAS 239

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            L AC  L ALD G+ +H  YI+      N  L   +IDMYAKCG ++ A  +F   P+ 
Sbjct: 240 SLAACANLVALDQGRWMHV-YIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRL 298

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + V  +N++I G A HG  + +I VF +M++  + P+ VTFV +L ACSHG  VEEG+ 
Sbjct: 299 KRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRY 358

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +FESM + Y +KP++EHYGC+VDLL R GRL EA  +I SM    +  IW ALL+AC++H
Sbjct: 359 YFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIH 418

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           ++A++GE  G+ + +L+P+H   +VLL+N+ + T  W EAR +R+ + +SG +K PG S 
Sbjct: 419 KDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSS 478

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE-EEKETVV 648
           IE NG  H+FL   +SHPQTK++ L L +M  KLK AGY+P + +V+ D+D+ E++ET +
Sbjct: 479 IELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETAL 538

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLA+AFGL+N+  K  IRI KNLR+C DCHLA K +S++Y REI+VRD IR+H F
Sbjct: 539 LKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHF 598

Query: 709 KKGNCSCMDFW 719
           K G CSC D+W
Sbjct: 599 KDGTCSCNDYW 609



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 214/468 (45%), Gaps = 79/468 (16%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           LL SCKS +Q  Q+H +++ +GL  H I +++L+    LS     +  + ++F     P+
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLK--QLSSIFAPISYAHMVFDHFPQPD 64

Query: 73  IFIWNTLMRGYSRSD-SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           +F++NT+++  + S  S  ++   + S++ +  + PN ++F F    C        G Q+
Sbjct: 65  LFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQV 124

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
             H IK GLE +LF+ NALI  Y    ++ +A KVF+ S  RD+ S+N +++GYA++ + 
Sbjct: 125 RVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKM 184

Query: 192 CPALWLFRKMQDS-----------CIQ--------------------PDAFTFVAMFSAC 220
             A  LF +M +            C+Q                    P+ +T  +  +AC
Sbjct: 185 DEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAAC 244

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF-STMGMSKST 279
             L     G+  H  + KN   +  N  L   +I+MYAKCG +  A ++F S   + +  
Sbjct: 245 ANLVALDQGRWMHVYIKKN--NIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKV 302

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
             W++MI G+   GK + A ++F+QM                             K+E  
Sbjct: 303 WPWNAMIGGFAVHGKSKEAIEVFEQM-----------------------------KIEK- 332

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
            + P++VT VA+L AC     ++ G+   +    +      +     ++D+  + G +  
Sbjct: 333 -VSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKE 391

Query: 400 A---LSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREME 441
           A   +S  +  P     V+++ +++S    H    +GE    + +E++
Sbjct: 392 AEEIISSMHLTPD----VAIWGALLSACKIHKDAEMGERVGKIVKELD 435


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/780 (34%), Positives = 434/780 (55%), Gaps = 72/780 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILF 65
           ++ LL L ++  +      IH + V +GL  + ++ ++ L  +   +G   GL  +R LF
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 66  SQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS----------------- 106
            +I     N+F WN+L+  +++S    +A  ++  M  +  VS                 
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 107 -------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153
                        P  FT   VL+SCA   +   G ++H  ++K GL   + + N++++ 
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 154 Y----------SIF---------------------GYINNAHKVFEGSLARDLVSYNTLI 182
           Y          ++F                     G ++ A  +FE    R +VS+N +I
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 268

Query: 183 NGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            GY Q      AL LF +M  +S + PD FT  ++ SAC  L + RIGKQ HA + +   
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE- 327

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFS-TMGMSKSTAAWSSMISGYTREGKIERARQ 300
            +  N  +  A+I+ YAK G +  A R+   +M    +  ++++++ GY + G +E AR+
Sbjct: 328 -MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +F  M+ RD+V+WTAMI GY Q G   +A++LF  M + G  P+  T+ AVL  C  L  
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD+GK++H + I ++   ++  ++ A+I MYA+ GS   A  +F ++    +T++ + S+
Sbjct: 447 LDYGKQIHCRAIRSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT-WTSM 504

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I  LAQHG GE ++ +F EM   G++PD +T+V VL ACSH G V EGK++++ + N + 
Sbjct: 505 IVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQ 564

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I P+M HY CMVDLLAR G   EA   I+ MP + +++ W +LL+ACR+H+NA++ E+A 
Sbjct: 565 IAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAA 624

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +KLL ++P++   Y  ++N+ +   RW +A ++ K   +  ++K  G+S+      +H F
Sbjct: 625 EKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVF 684

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            A    HPQ   +  M   M  ++K AG+VP+   V+ DVD+E KE ++S HSEKLA+AF
Sbjct: 685 GADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAF 744

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI++  K T+R+ KNLR+C DCH A K +S++  REI+VRDA RFH F+ G CSC D+W
Sbjct: 745 GLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/616 (41%), Positives = 381/616 (61%), Gaps = 25/616 (4%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD---LFIRNALIHFYSIFGYINNAH 164
           +NFT PF L             Q+H H++K         L    ++  F S F Y   A 
Sbjct: 23  HNFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSY---AK 67

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            +F+   A ++  +NT +  +A+   P  A+ LF ++++  I PD +T   +  AC+ L 
Sbjct: 68  LIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLL 127

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           D R GK  H  V K LG + SNM L+  ++++YA CG + +A +VF  M   +    W+ 
Sbjct: 128 DVRNGKIVHGYVEK-LG-LQSNMFLQNMIVHLYALCGEIGVARKVFDKMP-QRDVITWNI 184

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           MI+   + G  E A +LF +M +R++ SWT+MI GY+Q G   +A++LF +ME  G+ P+
Sbjct: 185 MIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPN 244

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           EVT+VAVL AC  +G L  G+R+H  +     + +NI +   +IDMY KCG ++ A  +F
Sbjct: 245 EVTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF 303

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             + +  +TV  ++++I+GLA HG  E ++A+F +M   G+KP+ VTF+ +L ACSH G+
Sbjct: 304 DNMEE--RTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGM 361

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           VE+G+++F SM  +YGI P++EHYGCMVDL +R G L EA+  I +MP   N V+W ALL
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
             C++H+N K+ E A + L  L+P +  +YV+LSN+ AE  RWE+  +VRKLM D G++K
Sbjct: 422 GGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKK 481

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            PGWS I   G ++ F+A   +HPQT+EI    + +  ++K  GYVPNT  V+ D++E++
Sbjct: 482 TPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQ 541

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  +  HSEKLA+ FGLI +     IRI KNLR+C DCH A K++S +  REI+VRD  
Sbjct: 542 KEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRN 601

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G+CSC D+W
Sbjct: 602 RFHCFKNGSCSCGDYW 617



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/507 (23%), Positives = 232/507 (45%), Gaps = 70/507 (13%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           L H     LL +  S  +  Q+H  ++ +  N  +SS  L    ++    +    ++++F
Sbjct: 13  LHHRPSTHLLHNFTSPFELKQLHAHLLKT--NSPLSSLPLSRVASVCAFNSSFSYAKLIF 70

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +D   +  WNT +R ++  DSP +A+ L+   L +  +SP+++T  FVL +C+RL   
Sbjct: 71  QLLDASEVTHWNTCLRSFAEGDSPADAISLFYR-LREFDISPDHYTCSFVLKACSRLLDV 129

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN------ 179
           ++G  +H ++ K GL+ ++F++N ++H Y++ G I  A KVF+    RD++++N      
Sbjct: 130 RNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARL 189

Query: 180 -------------------------TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
                                    ++I GYAQ  +   A+ LF +M+D+ + P+  T V
Sbjct: 190 VKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVV 249

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           A+  AC ++ +  +G++ H   + N      N+ +   +I+MY KCG +  A R+F  M 
Sbjct: 250 AVLVACADMGNLVLGRRIHD--FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             ++  +WS+MI+G    G+ E                                AL LF 
Sbjct: 308 -ERTVVSWSAMIAGLAAHGRAE-------------------------------DALALFN 335

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           KM + G+ P+ VT + +L AC  +G ++ G++       +      I     ++D++++ 
Sbjct: 336 KMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRA 395

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G +  A      +P     V ++ +++ G   H   + +    R +  +    DG  +V 
Sbjct: 396 GLLQEAHEFIMNMPIAPNGV-VWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGY-YVV 453

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIK 481
           +    +  G  E+  +  + M + G+K
Sbjct: 454 LSNIYAEAGRWEDVARVRKLMRDRGVK 480


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 271/659 (41%), Positives = 387/659 (58%), Gaps = 42/659 (6%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGC------QIHCHIIKFGLEFDLFIRNALIH 152
           + SK   + N FT      +   L + KS        Q+H   ++ G   D ++   L+ 
Sbjct: 11  LASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVK 70

Query: 153 FYSI--FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
            Y+   F  +N A KVFE     ++  +N +I G  Q  EPC A+  + KM  +  +P+ 
Sbjct: 71  CYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNK 130

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKN----------------------------LGC 242
           FT+  +F ACT       G Q HA V K                             LG 
Sbjct: 131 FTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGE 190

Query: 243 VG-SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            G S+++   A+I+ Y KCG +  A+ +F +M   K+  +W+ M+SG  + G IE AR+L
Sbjct: 191 DGNSDVICFNAMIDGYLKCGEVEAAKELFWSM-EDKNVGSWNVMVSGMAKCGMIEEAREL 249

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F++M +++ +SW+AMI GY + G + +ALE+F  M+   I P +  + +VL AC  LGAL
Sbjct: 250 FNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGAL 309

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D G+ +H  Y+ N     +  L TA++DMYAKCG +D A  VF K+ K  K V  +N++I
Sbjct: 310 DQGRWIHA-YVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEK--KEVFTWNAMI 366

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
            GL  HG  E +I +F +M+    +P+G+T + VL AC+H G+V+EG + F SM   YGI
Sbjct: 367 CGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGI 426

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P MEHYGC+VDLL R G L EA  ++ SMP + ++ +W ALL ACR H + ++GE  G+
Sbjct: 427 EPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGK 486

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            LL+LEP +   Y LLSN+ A   RW++   VRKLM + G++   G S I+ +G +H F 
Sbjct: 487 ILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFK 546

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
               SHPQ K I LMLK+M  +LK  G+ PNT QV+FD++EEEKE  + YHSEKLA+AFG
Sbjct: 547 MGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFG 606

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LIN++   TI + KNLR+C DCH AFKL+S++Y REI+VRD  R+H FK G CSC DFW
Sbjct: 607 LINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/727 (36%), Positives = 422/727 (58%), Gaps = 56/727 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           +K +V   + LL +      LK+  +IHGQ+        I++S   + FA++G  N   +
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQL--------ITNSFAANVFAMTGVVNMYAK 194

Query: 61  SR------ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
            R       +F ++   ++  WNT++ G+S++   ++AL L   M  +G   P++ T   
Sbjct: 195 CRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG-QRPDSITLVT 253

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           VL + A +     G  IH + I+ G    + I  AL   YS  G +  A  +F+G   + 
Sbjct: 254 VLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKT 313

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+N++++GY Q  EP  A+ +F KM +  I P   T +    AC +L D   GK  H 
Sbjct: 314 VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHK 373

Query: 235 VVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            V + NLG   S++ +  ++I+MY+KC                                 
Sbjct: 374 FVDQLNLG---SDISVMNSLISMYSKCK-------------------------------- 398

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
           +++ A  +F+ ++ R  VSW AMI GY+Q G  S+AL  F +M+SLG+ PD  TMV+V+ 
Sbjct: 399 RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           A   L      K +H   I + +  +NIF+TTA++DMY+KCG+I  A  +F  I    + 
Sbjct: 459 ALAELSVTRHAKWIHGLIIRSCL-DKNIFVTTALVDMYSKCGAIHMARKLFDMISD--RH 515

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  +N++I G   HGLG  ++ +F +M+   ++P+ +T+++V+ ACSH GLV+EG + F+
Sbjct: 516 VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFK 575

Query: 474 SM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM  +YG++P M+HYG MVDLL R GR+ EA+  I++MP      ++ A+L AC++H+N 
Sbjct: 576 SMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNI 635

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++GE A +KL +L PD G ++VLL+N+ A T +W +  +VRK M+  G++K PG S +E 
Sbjct: 636 EVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F +   +HPQ+K I   L+++  ++K+AGYVP+T  ++ DV+++ +E +++ HS
Sbjct: 696 RNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVEDDVQEQLLNSHS 754

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFGL+N+    TI + KNLR+CGDCH A K +S +  REI+VRD  RFH FK G 
Sbjct: 755 EKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGI 814

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 815 CSCGDYW 821


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/654 (42%), Positives = 404/654 (61%), Gaps = 22/654 (3%)

Query: 81  RGYSRSDS-----PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ----- 130
           RG + S S      +EA+  Y  ML+ G   P+ +TFP +L + A               
Sbjct: 19  RGRAASSSVSGHGAEEAVAGYVRMLAGG-ARPDAYTFPSLLKAAAAARGAAVAAASVGGA 77

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE----GSLARDLVSYNTLINGYA 186
           IH H++KFG+E +    ++LI  Y+  G    A  V E     +     V +N LI+G+ 
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +      +   F  M  +     A T+V++ SAC +  D  +G Q H  V ++   V  +
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLES--GVLPD 195

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             ++ A+++MYA+CG M+ A  +F  M M +S A+W+S+ISG  R G+++RAR LFD M 
Sbjct: 196 QRVENALVDMYAECGDMDAAWVLFEGMQM-RSMASWTSVISGLVRSGQVDRARDLFDHMP 254

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +RD ++WTAMI GY QVG F  ALE F  M+   +  DE TMV+V+ AC  LGAL+ G+ 
Sbjct: 255 ERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGE- 313

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             + Y+  +    ++F+  A+IDMY+KCGSI+ AL VF  +    K    + +II GLA 
Sbjct: 314 WARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFT--WTAIILGLAV 371

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           +G GE +I +F  M      PD VTFV VL AC+H GLV++G++FF SM   Y I P + 
Sbjct: 372 NGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVV 431

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGC++D+L R G+L EA   I  MP   NS IW  LLA+CR++ N++IGE+A ++LL+L
Sbjct: 432 HYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLEL 491

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +PD+   Y+LLSNM A++ RW++ R++R+++ + GI+K PG S IE NG +H F+A+ +S
Sbjct: 492 DPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRS 551

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP  KEI   L+++   L++AGYVP+  +V+ +V EEEK+ V+ +HSEKLA+ F L+ S 
Sbjct: 552 HPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSE 611

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S   IRI KNLR+C DCH A KL+S++Y RE++VRD  RFH F+ G+CSC D+W
Sbjct: 612 SNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 140/311 (45%), Gaps = 36/311 (11%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGL--NHHISSS--------------------- 43
           + +++L +C   K L   +Q+H +++ SG+  +  + ++                     
Sbjct: 163 TYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGM 222

Query: 44  QLISFFALSGCKNGLFRS------RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           Q+ S  + +   +GL RS      R LF  +   +   W  ++ GY +    ++AL  + 
Sbjct: 223 QMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFR 282

Query: 98  SM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
            M + K  V  + FT   V+ +CA+L + ++G     ++ + G++ D+F+ NALI  YS 
Sbjct: 283 YMQICK--VRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSK 340

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G I  A  VF+    RD  ++  +I G A       A+ +F +M  +   PD  TFV +
Sbjct: 341 CGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGV 400

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            +ACT       G++F   + +    +   ++    +I++  + G +  A      M M 
Sbjct: 401 LTACTHAGLVDKGREFFLSMTEAYN-ISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMK 459

Query: 277 KSTAAWSSMIS 287
            ++  W ++++
Sbjct: 460 PNSTIWGTLLA 470


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/681 (38%), Positives = 402/681 (59%), Gaps = 14/681 (2%)

Query: 44  QLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG 103
           + I  ++ SG    L R+R LF +I  P++  W  L+   ++     EA+  Y     K 
Sbjct: 16  KFIKVYSNSG---DLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
            V P+      V  +CA L    +  ++H   I+FG   D+ + NALI  Y        A
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
             VFEG   RD++S+ ++ + Y        AL  FRKM  +  +P++ T  ++  ACT+L
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
            D + G++ H  V +N   +G N+ + +A++NMYA C  +  A+ VF +M   + T +W+
Sbjct: 193 KDLKSGREVHGFVVRN--GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS-RRDTVSWN 249

Query: 284 SMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            +I+ Y    + E+   +F +M       +  SW A+I G  Q G   +ALE+  +M++ 
Sbjct: 250 VLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS 309

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           G  P+++T+ +VL AC  L +L  GK++H  YI    F +++  TTA++ MYAKCG ++ 
Sbjct: 310 GFKPNQITITSVLPACTNLESLRGGKQIHG-YIFRHWFFQDLTTTTALVFMYAKCGDLEL 368

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           +  VF  + K   TVS +N++I   + HG GE ++ +FREM   G++P+ VTF  VL  C
Sbjct: 369 SRRVFSMMTKR-DTVS-WNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGC 426

Query: 460 SHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH  LV+EG   F+SM  ++ ++P  +H+ CMVD+L+R GRL+EAY  I+ MP +  +  
Sbjct: 427 SHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGA 486

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W ALL  CR+++N ++G IA  +L ++E D+  +YVLLSN+L     W EA + RKLM D
Sbjct: 487 WGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRD 546

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G+ K PG S+I+    +H F+   KS+ Q+ EI   L  M  K++ AGY+PNT  V+ D
Sbjct: 547 RGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQD 606

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           VD+EEKE V+  HSEKLA+AFG++N   + +IR+ KNLRICGDCH A K +++I   +I+
Sbjct: 607 VDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKII 666

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD++RFH F+ G CSC DFW
Sbjct: 667 VRDSLRFHHFRDGLCSCQDFW 687


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/712 (37%), Positives = 412/712 (57%), Gaps = 46/712 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           L+ +      A Q+H   +  GL H    +S  L+  +   G     +R   +F ++   
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR---VFDEMPER 131

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++  WN ++ G  R+    +A+ L   M+ +G+   +  T   VL  C  L        +
Sbjct: 132 DVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG-DAVTLSSVLPMCVVLGDRALALVM 190

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H + +K GL  +LF+ NALI  Y   G +  AH VF G   RDLV++N++I+   Q  + 
Sbjct: 191 HVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKV 250

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             A+ LF  M +S + PD  T V++ SA  +  D    K  H  V +    VG +++   
Sbjct: 251 AAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVG-DIIAGN 309

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+++MYAK               MSK                 I+ A+++FD +  RD+V
Sbjct: 310 AMVDMYAK---------------MSK-----------------IDAAQKVFDNLPDRDVV 337

Query: 312 SWTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           SW  +I+GY Q G  ++A+ ++  M +  G+ P + T V+VL A   LG L  G R+H  
Sbjct: 338 SWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHAL 397

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            I+      ++++TT +ID+YAKCG +  A+ +F  +P+  ++   +N+II+GL  HG G
Sbjct: 398 SIKTG-LNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPR--RSTGPWNAIIAGLGVHGHG 454

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
             ++++F +M+   +KPD VTFV++L ACSH GLV++G+ FF+ M   YGI P  +HY C
Sbjct: 455 AKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTC 514

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVD+L R G+LDEA+  IQSMP   +S +W ALL ACR+H N ++G++A Q L +L+P++
Sbjct: 515 MVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN 574

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS--HP 607
             +YVL+SNM A+  +W+    VR L+    +QK PGWS +E  G++  F +  ++  HP
Sbjct: 575 VGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHP 634

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q +EI+  L D+  K+KSAGYVP+   V+ DV+E+EKE +++ HSE+LA+AFG+IN+   
Sbjct: 635 QHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPG 694

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             + I KNLR+CGDCH A K +S+I  REI+VRDA RFH FK G+CSC DFW
Sbjct: 695 TPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/589 (43%), Positives = 370/589 (62%), Gaps = 13/589 (2%)

Query: 135 IIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
           +++  L  D F  + ++ F ++   G +  A  VF         + N++I GY     P 
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A+  ++ M    + PD FTF ++F +C  L +   GKQ H    K LG   S+  ++  
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTK-LG-FASDAYIQNT 115

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLV 311
           ++NMY+ CG +  A +VF  M ++KS  +W++MI  Y +      A +LF +M+   +L 
Sbjct: 116 LMNMYSNCGCLVSARKVFDKM-VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLF 174

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
            W  MI+G+ +   + +AL LF +M+  G+  D+VTM ++L AC  LGAL+ GK LH  Y
Sbjct: 175 CWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV-Y 233

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           IE      ++ L TA++DMYAKCGSI++A+ VF ++P+  K V  + ++I GLA  G G 
Sbjct: 234 IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE--KDVMTWTALIVGLAMCGQGL 291

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            ++ +F EM++  +KPD +TFV VL ACSH GLV EG  +F SM N YGI+P +EHYGCM
Sbjct: 292 KALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCM 351

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VD+L R GR+ EA  LIQ+MP   +  +   LL+ACR+H N  + E A Q+L++L+P +G
Sbjct: 352 VDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNG 411

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
             YVLLSN+ +    WE A+++R+LM +  I+KPPG S IE  G +H F+    SHPQ+ 
Sbjct: 412 GTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSS 471

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           EI   L DM  +LKSAGYVP+  +V+FD+DE+EKE  +S HSEKLA+AFGL+++     I
Sbjct: 472 EIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPI 531

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+ KNLR+C DCH A K +SE+Y REI+VRD  RFH F KG+CSC DFW
Sbjct: 532 RVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 191/402 (47%), Gaps = 77/402 (19%)

Query: 41  SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
           S+S++++F AL      L  +R++F+QI NP  F  N+++RGY+  + P++A++ Y  M+
Sbjct: 12  SASKIVAFCALHD-SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMM 70

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
            +G+  P+ FTFP +  SC  L     G Q+HCH  K G   D +I+N L++ YS  G +
Sbjct: 71  LQGL-DPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCL 126

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK-------------------- 200
            +A KVF+  + + +VS+ T+I  YAQ   P  A+ LFR+                    
Sbjct: 127 VSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVED 186

Query: 201 ------------MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                       MQ S ++ D  T  ++  ACT L    +GK  H  + K    +  ++ 
Sbjct: 187 SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK--IEVDVA 244

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD-- 306
           L TA+++MYAKCG +  A RVF  M   K    W+++I G    G+  +A +LF +M   
Sbjct: 245 LGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMS 303

Query: 307 --QRDLVSWTAMISGYSQVG----------------GFSQALELFGKM------------ 336
             + D +++  +++  S  G                G   ++E +G M            
Sbjct: 304 EVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAE 363

Query: 337 -----ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                +++ + PD   +V +L AC   G L   +R  QQ IE
Sbjct: 364 AEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIE 405



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 170/368 (46%), Gaps = 27/368 (7%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFA---LSGCKNGLFRSRIL 64
            ++L+ +  +C  L  A ++  ++V+  +   +S + +I  +A   L      LFR   +
Sbjct: 113 QNTLMNMYSNCGCLVSARKVFDKMVNKSV---VSWATMIGAYAQWDLPHEAIKLFRRMEI 169

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            S     N+F WN ++ G+      +EAL L+  M   G V  +  T   +L +C  L +
Sbjct: 170 AS-----NLFCWNIMINGHVEDSDYEEALSLFNEMQLSG-VKGDKVTMASLLIACTHLGA 223

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  +H +I K  +E D+ +  AL+  Y+  G I +A +VF+    +D++++  LI G
Sbjct: 224 LELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVG 283

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            A   +   AL LF +MQ S ++PDA TFV + +AC+       G  +   +    G + 
Sbjct: 284 LAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG-IQ 342

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQL 301
            ++     +++M  + G +  AE +   M M+        ++S     G +   ERA Q 
Sbjct: 343 PSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQ 402

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
             ++D ++  ++  + + YS +  +  A     KM  L +  +       ++   G  A+
Sbjct: 403 LIELDPKNGGTYVLLSNIYSSMKNWEAA----KKMRELMVERN-------IKKPPGCSAI 451

Query: 362 DFGKRLHQ 369
           + G  +H+
Sbjct: 452 EVGGVVHE 459


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 378/617 (61%), Gaps = 20/617 (3%)

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF---YSIFGYINNAHKVFEG 169
           PF    C  +S  +   Q H  II+ GL     +   LI+F    S    +  A K+F+ 
Sbjct: 26  PFHFEKCQSMSQLR---QYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDS 82

Query: 170 SLARDLVSYNTLINGY--AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
               D   YNT+I G+  +Q+      L L+  M  + + P+ FTF ++  AC ++    
Sbjct: 83  IPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH-- 140

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G Q HA ++K  G  G++ +   ++I+MY     +  A RVF T+    S + W+S+IS
Sbjct: 141 -GMQIHAHLFK-FG-FGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVS-WTSLIS 196

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEV 346
           GY++ G I+ A  +F  M Q++  SW AM++ Y Q   F +A  LF +M++   +  D+ 
Sbjct: 197 GYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKF 256

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
               +L AC GLGALD GK +H+ YI+      +  LTTA++DMY KCG ++ AL VF+ 
Sbjct: 257 VATTMLSACTGLGALDQGKWIHE-YIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHS 315

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +P   + +S +N +I GLA HG GE +I +F+EME   + PD +TF+ +L AC+H GLVE
Sbjct: 316 LPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVE 375

Query: 467 EGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+ +F  M+  YGI+P+MEH+GCMVDLL R G + EA  LI  MP   +  +   LL A
Sbjct: 376 EGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGA 435

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           C+ HRN ++GE  G+++++LEP++   YVLL+N+ A   +WE+A +VRKLMDD G++K P
Sbjct: 436 CKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAP 495

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV--FDVDEEE 643
           G+S IE  GT+H F+A +++HPQ KE+   + +M   LKS GYV +T  V+   D DEEE
Sbjct: 496 GFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEE 555

Query: 644 K-ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
             E  + YHSEKLA+AFGL  ++  ET+RI KNLRIC DCH A KL+S ++ REI+VRD 
Sbjct: 556 DGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDR 615

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G CSC D+W
Sbjct: 616 TRFHRFKMGQCSCQDYW 632



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 225/506 (44%), Gaps = 81/506 (16%)

Query: 15  LESCKSLKQALQIHGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
            E C+S+ Q  Q H QI+  GL   NH I    LI+F A +   + L  +  LF  I  P
Sbjct: 29  FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPP--LINFCARASTSDALTYALKLFDSIPQP 86

Query: 72  NIFIWNTLMRGYSRSD--SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + F++NT+++G+  S        L+LY+ ML   ++ PNNFTFP +L +C ++   + G 
Sbjct: 87  DAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVL-PNNFTFPSLLIACRKI---QHGM 142

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ-- 187
           QIH H+ KFG        N+LIH Y  F  +  A +VF      D VS+ +LI+GY++  
Sbjct: 143 QIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWG 202

Query: 188 -----------VKEPCPALW------------------LFRKMQ-DSCIQPDAFTFVAMF 217
                      + +   A W                  LF +M+ ++    D F    M 
Sbjct: 203 LIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTML 262

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS- 276
           SACT L     GK  H  + +N   +  +  L TA+++MY KCG +  A +VF ++ +  
Sbjct: 263 SACTGLGALDQGKWIHEYIKRN--GIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPC 320

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           +  ++W+ MI G    G  E A QLF +M+++ +                          
Sbjct: 321 RWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVA------------------------- 355

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
                 PD++T + +L AC   G ++ G+      I        +     ++D+  + G 
Sbjct: 356 ------PDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGM 409

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTV 455
           +  A  +  ++P +   V++  +++    +H   E    + R   ++ L+P+    +V +
Sbjct: 410 VPEARKLIDEMPVS-PDVTVLGTLLGACKKHRNIELGEEIGR--RVIELEPNNSGRYVLL 466

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIK 481
               ++ G  E+  +  + M + G+K
Sbjct: 467 ANLYANAGKWEDAAKVRKLMDDRGVK 492



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 154/339 (45%), Gaps = 14/339 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +SL+ +  + ++L++A ++   I H      +S + LIS ++  G  +  F    +F  +
Sbjct: 161 NSLIHMYVTFQALEEARRVFHTIPHPD---SVSWTSLISGYSKWGLIDEAF---TIFQLM 214

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N   WN +M  Y +++   EA  L+  M ++     + F    +L++C  L +   G
Sbjct: 215 PQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQG 274

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGY 185
             IH +I + G+E D  +  A++  Y   G +  A +VF  SL    R + S+N +I G 
Sbjct: 275 KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFH-SLPLPCRWISSWNCMIGGL 333

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A       A+ LF++M+   + PD  TF+ + +AC        G+ + + + +  G +  
Sbjct: 334 AMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYG-IEP 392

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL---F 302
            M     ++++  + G++  A ++   M +S       +++    +   IE   ++    
Sbjct: 393 RMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRV 452

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            +++  +   +  + + Y+  G +  A ++   M+  G+
Sbjct: 453 IELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGV 491


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/723 (37%), Positives = 416/723 (57%), Gaps = 52/723 (7%)

Query: 36  LNHHISSSQLISFFALSGCKNGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALV 94
           L    S + LIS +A    K G F  SR L  ++ + +   W  ++ GY++      A+ 
Sbjct: 73  LKSTFSWNTLISGYA----KQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE------------- 141
           ++  M+S+  V P+ FT   VL+SCA   +   G +IH  ++K GL              
Sbjct: 129 MFAKMISER-VPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMY 187

Query: 142 ------------FD------LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
                       FD      +   NALI  Y   G    A   FE    RD+VS+N++I+
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 184 GYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---- 238
           GY+Q      AL +F KM  +  ++PD FT  ++ SAC  L    IGKQ HA + +    
Sbjct: 248 GYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIER 297
             G VG+      A+I+MYAK G + +A  +      S  +  A++S++ GYT+ G ++ 
Sbjct: 308 TSGAVGN------ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR++F+++  RD+V+WTAMI GY Q G ++ ALELF  M + G  P+  T+ A+L     
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSS 421

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L  L+ GK++H   I+         +T A+I MYAK G+I+ A  VF  +P   K +  +
Sbjct: 422 LTILEHGKQIHASAIK-AGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGKKEIVSW 479

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
            S+I  LAQHGLG+ +I +F  M  +G+KPD +T+V VL AC+H GLVE+G++++  M  
Sbjct: 480 TSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTE 539

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            + I+P + HY CM+DL  R G L EAY  I+SMP + +++ W +LLA+C++H+NA + +
Sbjct: 540 VHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAK 599

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           +A ++LL ++P +   Y+ L+N+ +   +WE A Q RKLM D G++K  G S+I     +
Sbjct: 600 VAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEV 659

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F      HPQ  EI  ++ ++  ++K  G++P+T  V+ D++EE KE ++ YHSEKLA
Sbjct: 660 HAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLA 719

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGL+N+     +RI KNLR+C DCH A K +S++  REI+VRDA RFH FK G+CSC 
Sbjct: 720 IAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCR 779

Query: 717 DFW 719
           D+W
Sbjct: 780 DYW 782



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 240/513 (46%), Gaps = 73/513 (14%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F  +L +  R+    +G  +HC IIK GL   +++ N L+ FY+  G +  AH VF+   
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 172 ARDLVSYNTLINGYAQVK---------------EPCP----------------ALWLFRK 200
            +   S+NTLI+GYA+                 +P                  A+W+F K
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M    + P  FT   + S+C       IG++ H+ V K LG +GS + + T+++NMYAKC
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK-LG-LGSCVPVATSLLNMYAKC 190

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G   +A+ VF  M + K+ + W+++IS Y + G+ E A   F++M  RD+VSW +MISGY
Sbjct: 191 GDPVIAKVVFDRMTV-KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY 249

Query: 321 SQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE------ 373
           SQ G   +AL +F KM     + PD  T+ ++L AC  L  L+ GK++H   +       
Sbjct: 250 SQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETS 309

Query: 374 --------------------------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
                                     N     NI   T+++D Y K G++  A  +F K+
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
               + V  + ++I G  Q+GL   ++ +FR M   G +P+  T   +L   S   ++E 
Sbjct: 370 RD--RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAAC 526
           GKQ   S +  G          ++ + A+ G ++ A  +   +P     ++ W +++ A 
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMAL 486

Query: 527 RLHRNAKIGEIAGQKLLD--LEPDHGAHYVLLS 557
             H   K      +++L   ++PDH  +  +LS
Sbjct: 487 AQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 224/494 (45%), Gaps = 67/494 (13%)

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           F  +      + DP  G+  H  + K    +G  + L   ++  YAK G +  A  VF  
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLG--VYLMNNLMTFYAKTGSLRFAHHVFDE 70

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M + KST +W+++ISGY ++G  E +R+L  +M   D VSWTA+I GY+Q G F  A+ +
Sbjct: 71  MPL-KSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWM 129

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F KM S  + P + T+  VL +C     LD G+++H  ++  +  G  + + T++++MYA
Sbjct: 130 FAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIH-SFVVKLGLGSCVPVATSLLNMYA 188

Query: 393 KCGSIDTALSVFYKIP-KNLKT----VSLF------------------------NSIISG 423
           KCG    A  VF ++  KN+ T    +SL+                        NS+ISG
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248

Query: 424 LAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
            +Q G    ++ +F +M     LKPD  T  ++L AC++   +  GKQ    +L    + 
Sbjct: 249 YSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQ-SMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
                  ++ + A+ G ++ A  +++ +   + N + + +LL       N K       K
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 542 LLDLEPDHGAHYVLLSNML---AETYRWEEARQVRKLMDDSGIQKPPGWSY--------- 589
           L D +       V  + M+    +   W +A ++ +LM + G   P   SY         
Sbjct: 369 LRDRD------VVAWTAMIVGYVQNGLWNDALELFRLMVNEG---PEPNSYTLAAMLSVS 419

Query: 590 -----IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
                +EH   +H   A K     T  +   L  M  K  +     N  + VFD+   +K
Sbjct: 420 SSLTILEHGKQIHAS-AIKAGESSTPSVTNALIAMYAKTGNI----NVAKRVFDLPNGKK 474

Query: 645 ETVVSYHSEKLALA 658
           E +VS+ S  +ALA
Sbjct: 475 E-IVSWTSMIMALA 487


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/723 (37%), Positives = 416/723 (57%), Gaps = 52/723 (7%)

Query: 36  LNHHISSSQLISFFALSGCKNGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALV 94
           L    S + LIS +A    K G F  SR L  ++ + +   W  ++ GY++      A+ 
Sbjct: 73  LKSTFSWNTLISGYA----KQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE------------- 141
           ++  M+S+  V P+ FT   VL+SCA   +   G +IH  ++K GL              
Sbjct: 129 MFAKMISER-VPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMY 187

Query: 142 ------------FD------LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
                       FD      +   NALI  Y   G    A   FE    RD+VS+N++I+
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 184 GYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---- 238
           GY+Q      AL +F KM  +  ++PD FT  ++ SAC  L    IGKQ HA + +    
Sbjct: 248 GYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIER 297
             G VG+      A+I+MYAK G + +A  +      S  +  A++S++ GYT+ G ++ 
Sbjct: 308 TSGAVGN------ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR++F+++  RD+V+WTAMI GY Q G ++ ALELF  M + G  P+  T+ A+L     
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSS 421

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L  L+ GK++H   I+         +T A+I MYAK G+I+ A  VF  +P   K +  +
Sbjct: 422 LTILEHGKQIHASAIK-AGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGKKEIVSW 479

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
            S+I  LAQHGLG+ +I +F  M  +G+KPD +T+V VL AC+H GLVE+G++++  M  
Sbjct: 480 TSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTE 539

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            + I+P + HY CM+DL  R G L EAY  I+SMP + +++ W +LLA+C++H+NA + +
Sbjct: 540 VHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAK 599

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           +A ++LL ++P +   Y+ L+N+ +   +WE A Q RKLM D G++K  G S+I     +
Sbjct: 600 VAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEV 659

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F      HPQ  EI  ++ ++  ++K  G++P+T  V+ D++EE KE ++ YHSEKLA
Sbjct: 660 HAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLA 719

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGL+N+     +RI KNLR+C DCH A K +S++  REI+VRDA RFH FK G+CSC 
Sbjct: 720 IAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCR 779

Query: 717 DFW 719
           D+W
Sbjct: 780 DYW 782



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 240/513 (46%), Gaps = 73/513 (14%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F  +L +  R+    +G  +HC IIK GL   +++ N L+ FY+  G +  AH VF+   
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 172 ARDLVSYNTLINGYAQVK---------------EPCP----------------ALWLFRK 200
            +   S+NTLI+GYA+                 +P                  A+W+F K
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M    + P  FT   + S+C       IG++ H+ V K LG +GS + + T+++NMYAKC
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK-LG-LGSCVPVATSLLNMYAKC 190

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G   +A+ VF  M + K+ + W+++IS Y + G+ E A   F++M  RD+VSW +MISGY
Sbjct: 191 GDPVIAKVVFDRMTV-KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY 249

Query: 321 SQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE------ 373
           SQ G   +AL +F KM     + PD  T+ ++L AC  L  L+ GK++H   +       
Sbjct: 250 SQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETS 309

Query: 374 --------------------------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
                                     N     NI   T+++D Y K G++  A  +F K+
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
               + V  + ++I G  Q+GL   ++ +FR M   G +P+  T   +L   S   ++E 
Sbjct: 370 RD--RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAAC 526
           GKQ   S +  G          ++ + A+ G ++ A  +   +P     ++ W +++ A 
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMAL 486

Query: 527 RLHRNAKIGEIAGQKLLD--LEPDHGAHYVLLS 557
             H   K      +++L   ++PDH  +  +LS
Sbjct: 487 AQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 225/494 (45%), Gaps = 67/494 (13%)

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           F  +      + DP  G+  H  + K    +G  + L   ++  YAK G +  A  VF  
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLG--VYLMNNLMTFYAKTGSLRFAHHVFDE 70

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M + KST +W+++ISGY ++G  E +R+L  +M   D VSWTA+I GY+Q G F  A+ +
Sbjct: 71  MPL-KSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWM 129

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F KM S  + P + T+  VL +C     LD G+++H  ++  +  G  + + T++++MYA
Sbjct: 130 FAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIH-SFVVKLGLGSCVPVATSLLNMYA 188

Query: 393 KCGSIDTALSVFYKIP-KNLKT----VSLF------------------------NSIISG 423
           KCG    A  VF ++  KN+ T    +SL+                        NS+ISG
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248

Query: 424 LAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
            +Q G    ++A+F +M     LKPD  T  ++L AC++   +  GKQ    +L    + 
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQ-SMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
                  ++ + A+ G ++ A  +++ +   + N + + +LL       N K       K
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 542 LLDLEPDHGAHYVLLSNML---AETYRWEEARQVRKLMDDSGIQKPPGWSY--------- 589
           L D +       V  + M+    +   W +A ++ +LM + G   P   SY         
Sbjct: 369 LRDRD------VVAWTAMIVGYVQNGLWNDALELFRLMVNEG---PEPNSYTLAAMLSVS 419

Query: 590 -----IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
                +EH   +H   A K     T  +   L  M  K  +     N  + VFD+   +K
Sbjct: 420 SSLTILEHGKQIHAS-AIKAGESSTPSVTNALIAMYAKTGNI----NVAKRVFDLPNGKK 474

Query: 645 ETVVSYHSEKLALA 658
           E +VS+ S  +ALA
Sbjct: 475 E-IVSWTSMIMALA 487


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/701 (36%), Positives = 420/701 (59%), Gaps = 43/701 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C SL    ++H  +   G    +  ++ L+  ++  G    L  +  +F  +   +
Sbjct: 130 ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV---LDVAHKVFVDMPVKD 186

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G+ ++ +   AL +   M  +G V  +  T   +L  CA+     +G  IH
Sbjct: 187 VGSWNAMISGFCQNGNAAGALGVLNRMKGEG-VKMDTITVASILPVCAQSDDVINGVLIH 245

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            H++K GL+ D+F+ NALI+ YS FG + +A  VF+    RDLVS+N++I  Y Q  +P 
Sbjct: 246 LHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPS 305

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL  F+ MQ   I+PD  T V++ S  ++L+D RI +     V +    +  ++++  A
Sbjct: 306 TALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR-EWLDKDVVIGNA 364

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++NMYAK G MN A  V                                FDQ+ ++D +S
Sbjct: 365 LVNMYAKLGYMNCAHTV--------------------------------FDQLPRKDTIS 392

Query: 313 WTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W  +++GY+Q G  S+A++ +  ME      P++ T V+++ A   +GAL  G ++H + 
Sbjct: 393 WNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL 452

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+N ++  ++F+ T +ID+Y KCG ++ A+S+FY+IP++  T   +N+II+ L  HG GE
Sbjct: 453 IKNSLY-LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRD--TSVPWNAIIASLGIHGRGE 509

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            ++ +F++M    +K D +TFV++L ACSH GLV+EG++ F+ M   YGIKP ++HYGCM
Sbjct: 510 EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCM 569

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G L++AY L+++MP   ++ IW ALL+AC+++ NA++G +A  +LL+++ ++ 
Sbjct: 570 VDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENV 629

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
            +YVLLSN+ A T +WE   +VR L  D G++K PGWS +        F    ++HP+  
Sbjct: 630 GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYT 689

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           EI   LK ++ K+KS GYVP+   V  D++E+EKE +++ HSE+LA+AFG+I++  +  I
Sbjct: 690 EIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPI 749

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           RI KNLR+CGDCH A K +S I  REI+VRD+ RFH FK G
Sbjct: 750 RIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 256 MYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++  C  +N  +++ + +   G S++    + +I+ Y   G I  +R  FD + ++++ S
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87

Query: 313 WTAMISGYSQVGGFSQALELFGKMESL----GIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           W ++IS Y + G + +A+    ++ S+     + PD  T   +L+ACV L  +D GK++H
Sbjct: 88  WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--VD-GKKVH 144

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +  + F  ++F+  +++ +Y++ G +D A  VF  +P  +K V  +N++ISG  Q+G
Sbjct: 145 -CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMP--VKDVGSWNAMISGFCQNG 201

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               ++ V   M+  G+K D +T  ++L  C+    V  G      +L +G+   +    
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE--IAGQKLLDLE 546
            ++++ ++ GRL +A  +   M    + V W +++AA   + +         G +L  + 
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEV-RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIR 320

Query: 547 PD 548
           PD
Sbjct: 321 PD 322


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/664 (38%), Positives = 395/664 (59%), Gaps = 36/664 (5%)

Query: 62  RILFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           R +F + +D  +++ WN+++  ++RS    +AL  ++SM  K  + PN  TFP  + SC+
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSM-RKLSLHPNRSTFPCTIKSCS 97

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L    +G QIH     FG   D+F+ +ALI  YS  GY+N+A K+F+    R++VS+ +
Sbjct: 98  SLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTS 157

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY Q +    A++LF++                F    E +   I      V    L
Sbjct: 158 MISGYVQNERAREAVFLFKE----------------FLLVDETDYDEIVGVGVGVDSVLL 201

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFS---TMGMSKSTAAWSSMISGYTREGKIER 297
           GCV          I+  A+  + ++ E V       G     A  ++++  Y + G+I  
Sbjct: 202 GCV----------ISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISV 251

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACV 356
           +R++FD M++ D+ SW ++I+ Y+Q G   +A  LF  M   G +  + VT+ AVL AC 
Sbjct: 252 SRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACA 311

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             GAL  GK +H Q ++ +    N+ + T+++DMY KCG ++ A   F ++ +  K V  
Sbjct: 312 HSGALQIGKCIHDQVVK-MELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKR--KNVKS 368

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM- 475
           +  +++G   HG G+ ++ VF EM   G+KP+ +TFV+VL ACSH GL++EG  +F  M 
Sbjct: 369 WTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMK 428

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             + ++P +EHY CMVDLL R G L EAYGLIQ M    + ++W +LL ACR+H+N ++G
Sbjct: 429 CEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELG 488

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           EI+ +KL  L+P +  +YVLLSN+ A+  RW++  ++R LM + G+ K PG+S +EH G 
Sbjct: 489 EISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGR 548

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +H FL   K HPQ ++I   L ++ +KL+  GY+PN   V++DVD EEK  V+  HSEKL
Sbjct: 549 VHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKL 608

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+AFG++NS     I+I KNLRICGDCH A KL+S+I  REI++RD+ RFH FK G CSC
Sbjct: 609 AVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSC 668

Query: 716 MDFW 719
            D+W
Sbjct: 669 GDYW 672



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 171/358 (47%), Gaps = 27/358 (7%)

Query: 1   MKRLVL--EHSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L L    S+    ++SC SL       QIH Q    G    I  +S LI  ++  G 
Sbjct: 77  MRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGY 136

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML----------SKGI 104
            N    +R LF +I   N+  W +++ GY +++  +EA+ L+   L              
Sbjct: 137 LND---ARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVG 193

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  ++     V+++CAR+        +H   +K G E  L + N L+  Y+  G I+ + 
Sbjct: 194 VGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSR 253

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTEL 223
           KVF+G    D+ S+N+LI  YAQ      A  LF  M +   ++ +A T  A+  AC   
Sbjct: 254 KVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHS 313

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
              +IGK  H  V K    +  N+++ T++++MY KCG + MA + F  +   K+  +W+
Sbjct: 314 GALQIGKCIHDQVVKME--LEDNLVVGTSIVDMYCKCGRVEMARKAFDRL-KRKNVKSWT 370

Query: 284 SMISGYTREGKIERARQLFDQM----DQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
            M++GY   G  + A ++F +M     + + +++ ++++  S  G   +    F KM+
Sbjct: 371 VMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMK 428



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 140/306 (45%), Gaps = 16/306 (5%)

Query: 27  IHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +HG  V  G    ++  + L+  +A  G    +  SR +F  ++  ++  WN+L+  Y++
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMDAYAKCG---EISVSRKVFDGMEETDVCSWNSLIAVYAQ 276

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +    EA  L++ M+ +G V  N  T   VL +CA   + + G  IH  ++K  LE +L 
Sbjct: 277 NGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLV 336

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           +  +++  Y   G +  A K F+    +++ S+  ++ GY        A+ +F +M    
Sbjct: 337 VGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCG 396

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC---VGSNMLLKTAVINMYAKCGL 262
           I+P+  TFV++ +AC+     + G  +    +  + C   V   +   + ++++  + G 
Sbjct: 397 IKPNYITFVSVLAACSHAGLLKEGWHW----FNKMKCEFDVEPGIEHYSCMVDLLGRAGY 452

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQMDQRDLVSWTAMIS 318
           +  A  +   M +      W S++        +E     AR+LF ++D  +   +  + +
Sbjct: 453 LKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLF-KLDPSNCGYYVLLSN 511

Query: 319 GYSQVG 324
            Y+  G
Sbjct: 512 IYADAG 517


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/726 (36%), Positives = 415/726 (57%), Gaps = 54/726 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           ++ +V   + LL L      LK+  +IHG ++ SG + ++        FA++G  N   +
Sbjct: 26  VRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNL--------FAMTGVVNMYAK 77

Query: 61  SRI------LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
            R       +F ++   ++  WNT++ GY+++   + AL+L   M  +G   P++ T   
Sbjct: 78  CRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEG-HRPDSITIVS 136

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L + A     + G  +H ++++ G E  + +  AL+  YS  G ++ A  +F+G   R 
Sbjct: 137 ILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRT 196

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+N++I+GY Q  +   A+ +F+KM D  +QP   T +    AC +L D   GK  H 
Sbjct: 197 VVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHK 256

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +V                                    + +    +  +S+IS Y++  +
Sbjct: 257 LV----------------------------------DQLKLDSDVSVMNSLISMYSKCKR 282

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           ++ A  +F  +  + LVSW AMI GY+Q G  ++AL  F +M+S  I PD  TMV+V+ A
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              L      K +H   I   +  +N+F+ TA++DMYAKCG+I TA  +F  +  N + V
Sbjct: 343 LAELSIPRQAKWIHGLVIRRFL-DKNVFVMTALVDMYAKCGAIHTARKLFDMM--NARHV 399

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +N++I G   HGLG+TS+ +F+EM+   +KP+ +TF+  L ACSH GLVEEG  FFES
Sbjct: 400 ITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFES 459

Query: 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M  +YGI+P M+HYG MVDLL R GRL++A+  IQ MP      ++ A+L AC++H+N  
Sbjct: 460 MKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVD 519

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +GE A  ++  L PD G ++VLL+N+ A    W +  +VR +M+ SG+QK PG S +E  
Sbjct: 520 LGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIG 579

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H F +   SHPQ+K+I   L+ +  ++++AGYVP+T   + DV+++ K  +++ HSE
Sbjct: 580 NEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDT-NSIHDVEDDVKVQLLNTHSE 638

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGL+N+ +   I I KNLR+CGDCH A K +S +  REI+VRD  RFHLFK G C
Sbjct: 639 KLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVC 698

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 699 SCGDYW 704



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 222/454 (48%), Gaps = 45/454 (9%)

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           +++GY++S S   AL  ++ M     V P  + F ++L  C   S  K G +IH  +I  
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDS-VRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G  ++LF    +++ Y+    IN+A+ +F+    RDLV +NT+I+GYAQ      AL L 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M +   +PD+ T V++  A  +    RIG   H  V +      S + + TA+++MY+
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR--AGFESLVNVSTALVDMYS 177

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG +++A  +F  M   ++  +W+SMI GY + G  E                      
Sbjct: 178 KCGSVSIARVIFDGMD-HRTVVSWNSMIDGYVQSGDAE---------------------- 214

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
                     A+ +F KM   G+ P  VT++  L AC  LG L+ GK +H + ++ +   
Sbjct: 215 ---------GAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVH-KLVDQLKLD 264

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL--KTVSLFNSIISGLAQHGLGETSIAV 436
            ++ +  ++I MY+KC  +D A  +F    KNL  KT+  +N++I G AQ+G    ++  
Sbjct: 265 SDVSVMNSLISMYSKCKRVDIAADIF----KNLRNKTLVSWNAMILGYAQNGCVNEALNA 320

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
           F EM+   +KPD  T V+V+ A +   +  + K     ++   +   +     +VD+ A+
Sbjct: 321 FCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAK 380

Query: 497 DGRLDEAYGLIQSMPYDANSVI-WRALLAACRLH 529
            G +  A  L   M  +A  VI W A++     H
Sbjct: 381 CGAIHTARKLFDMM--NARHVITWNAMIDGYGTH 412



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           M+ GY++      AL  F +M+   + P       +L+ C     L  GK +H   I + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            F  N+F  T V++MYAKC  I+ A ++F ++P+  + +  +N++ISG AQ+G  + ++ 
Sbjct: 61  -FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPE--RDLVCWNTMISGYAQNGFAKVALM 117

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           +   M   G +PD +T V++L A +   L+  G      +L  G +  +     +VD+ +
Sbjct: 118 LVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYS 177

Query: 496 RDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNAKIGEIAGQKLLD 544
           + G +  A  +   M  D  +V+ W +++       +A+   +  QK+LD
Sbjct: 178 KCGSVSIARVIFDGM--DHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLD 225


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/783 (34%), Positives = 442/783 (56%), Gaps = 81/783 (10%)

Query: 9   SSLLALLESCKSLKQAL---QIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRI 63
           SSL  +L+ C  L   +   Q+H Q +  G    +S  +S +  +      ++G      
Sbjct: 93  SSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDG----ER 148

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W +L+ GY ++   ++AL L++ M  +GI  PN FTF  VL   A   
Sbjct: 149 VFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAAVLGGLAADG 207

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G Q+H  +IK GL+  +F+ N++++ YS    +++A  VF+    R+ VS+N++I 
Sbjct: 208 AVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIA 267

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN---- 239
           G+        A  LF +M+   ++     F  +   C  + +    KQ H  V KN    
Sbjct: 268 GFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 240 -----------------------LGCVG---SNMLLKTAVINMYAKCGLMNMAERVFSTM 273
                                  L C+     N++  TA+I+ Y + G  + A  +F  M
Sbjct: 328 DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 274 ---GMSKSTAAWSSMISG-------------------------------YTREGKIERAR 299
              G+  +   +S++++                                Y++ G    A 
Sbjct: 388 RREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAA 447

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG-L 358
           ++F+ +D++D+V+W+AM+SGY+Q+G    A+++F ++   G+ P+E T  +VL AC    
Sbjct: 448 KIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPT 507

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKTVSLF 417
            +++ GK+ H   I++  F   + +++A++ MYAK G+I++A  VF + + ++L +   +
Sbjct: 508 ASVEQGKQFHSCSIKSG-FSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVS---W 563

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
           NS+ISG AQHG G+ S+ +F EM    L+ DG+TF+ V+ AC+H GLV EG+++F+ M+ 
Sbjct: 564 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 623

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +Y I P MEHY CMVDL +R G L++A  LI  MP+ A + IWR LLAACR+H N ++GE
Sbjct: 624 DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGE 683

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           +A +KL+ L+P   A YVLLSN+ A    W+E  +VRKLMD   ++K  G+S+IE     
Sbjct: 684 LAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKT 743

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
             F+A   SHPQ+  I L L++++++LK AGY P+T  V+ DV+EE KE ++S HSE+LA
Sbjct: 744 FSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLA 803

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGLI +     I+I KNLR+CGDCH   KL+S+I  R+I+VRD+ RFH FK G+CSC 
Sbjct: 804 IAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCG 863

Query: 717 DFW 719
           D+W
Sbjct: 864 DYW 866



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 242/529 (45%), Gaps = 58/529 (10%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-FTFPFVLNSC 119
           S+ LF +     +   N L+  +SR+D  +EAL L+  +   G  SP +  +   VL  C
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSG--SPTDGSSLSCVLKVC 102

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
             L     G Q+HC  IK G   D+ +  +L+  Y     + +  +VF+    +++VS+ 
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +L+ GY Q      AL LF +MQ   I+P+ FTF A+            G Q H +V K+
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              + S + +  +++NMY+K  +++ A+ VF +M  +++  +W+SMI+G+   G      
Sbjct: 223 --GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM-ENRNAVSWNSMIAGFVTNG------ 273

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                    DL                 +A ELF +M   G+   +     V++ C  + 
Sbjct: 274 --------LDL-----------------EAFELFYRMRLEGVKLTQTIFATVIKLCANIK 308

Query: 360 ALDFGKRLHQQYIEN-VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            + F K+LH Q I+N   F  NI   TA++  Y+KC  ID A  +F  +   ++ V  + 
Sbjct: 309 EMSFAKQLHCQVIKNGSDFDLNI--KTALMVAYSKCSEIDDAFKLFCMM-HGVQNVVSWT 365

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
           +IISG  Q+G  + ++ +F +M   G++P+  T+ T+L A  +  +            NY
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA--NAAVSPSQIHALVVKTNY 423

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
              P +     + D  ++ G  +EA  + + +  + + V W A+L+       A++G+I 
Sbjct: 424 ENSPSVGT--ALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSG-----YAQMGDIE 475

Query: 539 GQKLLDL-------EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           G   + L       EP+      +L+   A T   E+ +Q       SG
Sbjct: 476 GAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSG 524



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 171/364 (46%), Gaps = 37/364 (10%)

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           ++ ++F+ +  + L   N L+  +++  +   AL LF  ++ S    D  +   +   C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L D  +GKQ H        C+               KCG +             +  + 
Sbjct: 104 CLFDRIVGKQVHC------QCI---------------KCGFV-------------EDVSV 129

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            +S++  Y +   +E   ++FD+M  +++VSWT++++GY Q G   QAL+LF +M+  GI
Sbjct: 130 GTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI 189

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+  T  AVL      GA++ G ++H   I++ +    IF+  ++++MY+K   +  A 
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL-DSTIFVGNSMVNMYSKSLMVSDAK 248

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
           +VF  + +N   VS +NS+I+G   +GL   +  +F  M L G+K     F TV+  C++
Sbjct: 249 AVFDSM-ENRNAVS-WNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
              +   KQ    ++  G    +     ++   ++   +D+A+ L   M    N V W A
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366

Query: 522 LLAA 525
           +++ 
Sbjct: 367 IISG 370


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/726 (35%), Positives = 427/726 (58%), Gaps = 30/726 (4%)

Query: 13  ALLESCK---SLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L+ C+   +L+   Q+H Q+V +G++      S+L+  +  +GC      +R +F ++
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED---ARRMFDKM 71

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F W  +M  Y      +E + L+  M+++G V P++F FP V  +C+ L +++ G
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRVG 130

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             ++ +++  G E +  ++ +++  +   G ++ A + FE    +D+  +N +++GY   
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            E   AL +FRKM    ++P++ T  +  SACT L+  R G++ H    K +  + S++L
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK-VEELDSDLL 249

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKST--AAWSSM--ISGYTREGKIERARQLFDQ 304
           +  ++++ YAKC  + +A R F   GM K T   +W++M  ++G+T+ G  + A + F +
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKF---GMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQR 306

Query: 305 M----------DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           M            RD+V W ++IS  +Q G    AL+L  +M    +  + VTMV+ L A
Sbjct: 307 MHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 366

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  L AL  GK +HQ  I   +   N F+  ++IDMY +CGSI  +  +F  +P+  + +
Sbjct: 367 CSKLAALRQGKEIHQFIIRCGLDTCN-FILNSLIDMYGRCGSIQKSRRIFDLMPQ--RDL 423

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +N +IS    HG G  ++ +F++   MGLKP+ +TF  +L ACSH GL+EEG ++F+ 
Sbjct: 424 VSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKM 483

Query: 475 M-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   Y + P +E Y CMVDLL+R G+ +E    I+ MP++ N+ +W +LL ACR+H N  
Sbjct: 484 MKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPD 543

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           + E A + L +LEP    +YVL++N+ +   RWE+A ++R LM + G+ KPPG S+IE  
Sbjct: 544 LAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVK 603

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             LH F+    SHP  ++I   ++ +   +K  GYVP+T  V+ DVDE+EKE  +  HSE
Sbjct: 604 RKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSE 663

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           K+ALAFGLI++ +   +RI KNLR+CGDCH A K +S++ +R+I++RD  RFH F  G C
Sbjct: 664 KIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVC 723

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 724 SCGDYW 729



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 41/268 (15%)

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           D CI+     + ++   C +L + R+G Q HA +                V+N    C  
Sbjct: 7   DECIE----IYASILQKCRKLYNLRLGFQVHAQL----------------VVNGVDVCEF 46

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +                   S ++  Y + G +E AR++FD+M +R++ SWTA++  Y  
Sbjct: 47  LG------------------SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 88

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
           +G + + ++LF  M + G+ PD      V +AC  L     GK ++  Y+ ++ F  N  
Sbjct: 89  LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY-DYMLSIGFEGNSC 147

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +  +++DM+ KCG +D A   F +I    K V ++N ++SG    G  + ++ VFR+M L
Sbjct: 148 VKGSILDMFIKCGRMDIARRFFEEI--EFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVL 205

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            G+KP+ +T  + + AC++  L+  G++
Sbjct: 206 EGVKPNSITIASAVSACTNLSLLRHGRE 233


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 420/712 (58%), Gaps = 72/712 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S ++LLE CKS+ Q  QIH   +  GL+   +  +++I+F       N  +  ++ F  I
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQV-FDTI 67

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +P++FIWNT+++GYS+   P+  + +Y  ML+  I  P+ FTFPF L    R  + + G
Sbjct: 68  PHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNI-KPDRFTFPFSLKGFTRDMALQHG 126

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            ++  H +K G + +LF++ A IH +S+ G ++ AHKVF+   A ++V++N +++GY +V
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRV 186

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           K+     +   KM            + + SAC++L D   GK  H   Y N G V     
Sbjct: 187 KQ-----FKISKM------------LLVLSACSKLKDLEWGK--HIFKYINGGIVE---- 223

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
                 +M+A CG M+ A+ VF  M  ++   +W++MI GY R                 
Sbjct: 224 ------HMFAACGEMDEAQGVFDNMK-TRDVVSWTAMIDGYLR----------------- 259

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                         +  F  AL LF +M+   + PDE TMV++L AC  LGAL+ G+ + 
Sbjct: 260 --------------MNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWV- 304

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           +  I+      + F+  A++DMY KCG++  A  VF ++ +  K    + ++I GLA +G
Sbjct: 305 KTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFT--WTTMIVGLAING 362

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
            GE ++A+F  M    + PD +T++ VLCAC    +V++GK FF +M + +GIKP + HY
Sbjct: 363 HGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHY 418

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDLL   G L+EA  +I +MP   NS++W + L ACR+H+N ++ ++A +++L+LEP
Sbjct: 419 GCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEP 478

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           ++GA YVLL N+ A + +WE   QVRKLM + GI+K PG S +E NG ++ F+A  +SHP
Sbjct: 479 ENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHP 538

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q+KEI   L++M   L  AGY P+T +V  D+ EE+KET +  HSEKLA+A+ LI+S   
Sbjct: 539 QSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPG 598

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            TIRI KNLR+C DCH   KL+S+ Y RE++V+D  RFH F+ G+CSC +FW
Sbjct: 599 VTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 21/279 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQI---VHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           S +L +L +C  LK  L+    I   ++ G+  H+        FA  G    +  ++ +F
Sbjct: 192 SKMLLVLSACSKLKD-LEWGKHIFKYINGGIVEHM--------FAACG---EMDEAQGVF 239

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  W  ++ GY R +    AL L+  M     V P+ FT   +L +CA L + 
Sbjct: 240 DNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSN-VKPDEFTMVSILIACALLGAL 298

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  +   I K   + D F+ NAL+  Y   G +  A KVF+    +D  ++ T+I G 
Sbjct: 299 ELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGL 358

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A       AL +F  M ++ + PD  T++ +  AC  + D   GK F   +    G +  
Sbjct: 359 AINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC--MVDK--GKSFFTNMTMQHG-IKP 413

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
            +     ++++    G +  A  V   M +  ++  W S
Sbjct: 414 TVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGS 452


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 416/710 (58%), Gaps = 44/710 (6%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++S     Q  QIH +++  GL    S   +      S     +  +R +F  +  P 
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGL--QFSGFLITKLIHASSSFGDITFARQVFDDLPRPQ 83

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           IF WN ++RGYSR++  Q+AL++Y++M L++  VSP++FTFP +L +C+ LS  + G  +
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLAR--VSPDSFTFPHLLKACSGLSHLQMGRFV 141

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVK 189
           H  + + G + D+F++N LI  Y+    + +A  VFEG     R +VS+  +++ YAQ  
Sbjct: 142 HAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNG 201

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           EP  AL +F +M+   ++PD    V++ +A T L D + G+  HA V K    +  ++L+
Sbjct: 202 EPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++  MYAKCG                                ++  A+ LFD+M   +
Sbjct: 262 --SLNTMYAKCG--------------------------------QVATAKILFDKMKSPN 287

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           L+ W AMISGY++ G   +A+++F +M +  + PD +++ + + AC  +G+L+  + +++
Sbjct: 288 LILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE 347

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            Y+    +  ++F+++A+IDM+AKCGS++ A  VF +     + V +++++I G   HG 
Sbjct: 348 -YVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD--RDVVVWSAMIVGYGLHGR 404

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
              +I+++R ME  G+ P+ VTF+ +L AC+H G+V EG  FF  M ++ I PQ +HY C
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYAC 464

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           ++DLL R G LD+AY +I+ MP      +W ALL+AC+ HR+ ++GE A Q+L  ++P +
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
             HYV LSN+ A    W+   +VR  M + G+ K  G S++E  G L  F    KSHP+ 
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           +EIE  ++ +  +LK  G+V N    + D+++EE E  +  HSE++A+A+GLI++     
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTP 644

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +RITKNLR C +CH A KL+S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 172/368 (46%), Gaps = 12/368 (3%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           S+L      + LKQ   IH  +V  GL   I    LIS   +      +  ++ILF ++ 
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLE--IEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +PN+ +WN ++ GY+++   +EA+ ++  M++K  V P+  +    +++CA++ S +   
Sbjct: 285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-VRPDTISITSAISACAQVGSLEQAR 343

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            ++ ++ +     D+FI +ALI  ++  G +  A  VF+ +L RD+V ++ +I GY    
Sbjct: 344 SMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHG 403

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ L+R M+   + P+  TF+ +  AC      R G  F   +  +   +      
Sbjct: 404 RAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHK--INPQQQH 461

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQM 305
              VI++  + G ++ A  V   M +      W +++S   +   +E     A+QLF  +
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLF-SI 520

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D  +   +  + + Y+    + +  E+  +M+  G++ D       +R    L A   G 
Sbjct: 521 DPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG--RLEAFRVGD 578

Query: 366 RLHQQYIE 373
           + H +Y E
Sbjct: 579 KSHPRYEE 586


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/710 (36%), Positives = 409/710 (57%), Gaps = 44/710 (6%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++S     Q  QIH +++  GL    S   +      S     +  +R +F  +  P 
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVLGL--QFSGFLITKLIHASSSYGDITFARQVFDDLPRPQ 83

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           +F WN ++RGYSR++  Q+AL++Y+ M L++  VSP++FTFP +L +C  LS  + G  +
Sbjct: 84  VFPWNAIIRGYSRNNHFQDALLMYSKMQLAR--VSPDSFTFPHLLKACGGLSHLQMGRFV 141

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVK 189
           H  + + G E D+F++N LI  Y+    +  A  VFEG     R +VS+  +++ YAQ  
Sbjct: 142 HAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNG 201

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           EP  AL +F +M+   ++PD    V++ +A T L D   G+  HA V K +G      LL
Sbjct: 202 EPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK-MGLETEPDLL 260

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++  MYAKCG                                ++  A+ LFD+M   +
Sbjct: 261 -ISLNTMYAKCG--------------------------------QVATAKILFDKMKSPN 287

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           L+ W AMISGY++ G    A++LF +M +  + PD +++ + + AC  +G+L+   R   
Sbjct: 288 LILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLE-QARWMD 346

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
           +Y+    +  ++F+++A+IDM+AKCGS++ A SVF +     + V +++++I G   HG 
Sbjct: 347 EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLD--RDVVVWSAMIVGYGLHGQ 404

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
              +I+++R ME  G+ P+ VTF+ +L AC+H G+V EG  FF  M ++ I PQ +HY C
Sbjct: 405 AREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYAC 464

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           ++DLL R G LD+AY +I+ MP      +W ALL+AC+ HR+ ++G+ A Q+L  ++P +
Sbjct: 465 IIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSN 524

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
             HYV LSN+ A    W+   +VR  M + G+ K  G S++E  G L  F    KSHP+ 
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRY 584

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           +EIE  ++ +  +LK  G+V N    + D+++EE E  +  HSE++ +A+GLI++    T
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTT 644

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +RITKNLR C +CH A KL+S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 170/368 (46%), Gaps = 12/368 (3%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           S+L      + L+Q   IH  ++  GL        LIS   +      +  ++ILF ++ 
Sbjct: 227 SVLNAFTCLQDLEQGRSIHASVMKMGLE--TEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +PN+ +WN ++ GY+++   ++A+ L+  M++K  V P+  +    +++CA++ S +   
Sbjct: 285 SPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD-VRPDTISITSAISACAQVGSLEQAR 343

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +  ++ +     D+FI +ALI  ++  G +  A  VF+ +L RD+V ++ +I GY    
Sbjct: 344 WMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHG 403

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           +   A+ L+R M+   + P+  TF+ +  AC      R G  F   +  +   +      
Sbjct: 404 QAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHK--INPQQQH 461

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQM 305
              +I++  + G ++ A  V   M +      W +++S   +   +E     A+QLF  +
Sbjct: 462 YACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLF-SI 520

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D  +   +  + + Y+    + +  E+  +M+  G++ D       +R    L     G 
Sbjct: 521 DPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG--RLEGFRVGD 578

Query: 366 RLHQQYIE 373
           + H +Y E
Sbjct: 579 KSHPRYEE 586


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/625 (40%), Positives = 382/625 (61%), Gaps = 40/625 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN---AHKVFEGSLARDLVSYNTLINGYA 186
           QIH  IIK  L+ + F+   L+         N+   A  VF+   + D   +NT+I  Y 
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 187 QVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
             + P  ++ LF +M+   CI  D+++   +  AC  L DP  G++ H  V K +G +GS
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLK-IG-LGS 138

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGM------------------------------ 275
           ++ ++TA+I MYAK G + +A  +   M                                
Sbjct: 139 DLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMP 198

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            +   +W++MI G+   G +  A++LFD+  +RDL+SW++MI+ Y++    ++AL LF +
Sbjct: 199 ERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHE 258

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M+   + PD+VTMV+VL AC  +GAL  GK +H+  IE      ++ L T+++DMYAKCG
Sbjct: 259 MQLANVLPDKVTMVSVLSACGDVGALGMGKMIHE-CIERNRIEIDLKLGTSLVDMYAKCG 317

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            ID +L VF  +  N + V  ++++I GLA HG GE ++  F +M    +KP+ VTF+ V
Sbjct: 318 DIDNSLRVFNGM--NNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGV 375

Query: 456 LCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACSH GLV+EG  +F SM   Y + P++EHYGC+VD+L R GRL EA  LI+SMP+  
Sbjct: 376 LSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAP 435

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           ++++WRALL ACR+++N +I E A   LL+LEP    +YVLLSN+ ++   W++   VR+
Sbjct: 436 DAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRR 495

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           +M +  IQK PG S IE +  +H F+A  +SHP++K+I  ML ++T +LK+ GY P T  
Sbjct: 496 MMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTAS 555

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+ D DE+EKE  +++HSEKLA+AFGL+++    TIRI KNLR+C DCH+A KL+S  Y+
Sbjct: 556 VLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYK 615

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           R I+VRD  RFH F  G+CSC D+W
Sbjct: 616 RRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/713 (36%), Positives = 415/713 (58%), Gaps = 46/713 (6%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           +L+ +  S   A Q+H   +  GL      +S  L+  +   G  +  ++   +F ++  
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYK---VFDEMSE 131

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            ++  WN ++ G  R+    EA+ L+  M+ +G V+ +  T   VL  C  L        
Sbjct: 132 RDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEG-VAGDTVTVSSVLPMCVLLGDQVLALV 190

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H + +K GL+ +LF+ NALI  Y   G +  A  VF G   RDLV++N++I+G  Q  +
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL +F+ M+ S + PD  T V++ SA  +  D R  K  H  V +  G    +++  
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRR-GWDVDDIIAG 309

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+++MYAK                                   IE A+++FD M  +D 
Sbjct: 310 NAIVDMYAKLS--------------------------------NIEAAQRMFDSMPVQDS 337

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           VSW  +I+GY Q G  ++A+E +G M+   G+   + T V+VL A   LGAL  G R+H 
Sbjct: 338 VSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA 397

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             I+ +    ++++ T +ID+YAKCG +  A+ +F K+P+  ++   +N+IISGL  HG 
Sbjct: 398 LSIK-IGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPR--RSTGPWNAIISGLGVHGH 454

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
           G  ++ +F  M+  G+KPD VTFV++L ACSH GLV++G+ FF+ M + Y I P  +HY 
Sbjct: 455 GAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYA 514

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CM D+L R G+LDEA+  IQ+MP   +S +W ALL ACR+H N ++G++A Q L +L+P+
Sbjct: 515 CMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPE 574

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS--H 606
           +  +YVL+SNM A+  +W+   +VR L+    +QK PGWS IE   +++ F +  ++  H
Sbjct: 575 NVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPH 634

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           PQ +EI+  L+ +  K++S GYV +   V+ DV+++EKE +++ HSE+LA+AFG+IN+ S
Sbjct: 635 PQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPS 694

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +  + I KNLR+CGDCH A K +S+I  REI+VRD+ RFH FK G+CSC DFW
Sbjct: 695 RTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/727 (36%), Positives = 420/727 (57%), Gaps = 56/727 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           +K +V   + LL +      LK+  +IHGQ+        I++S   + FA++G  N   +
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQL--------ITNSFAANVFAMTGVVNMYAK 194

Query: 61  SR------ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
            R       +F ++   ++  WNT++ G+S++   ++AL L   M  +G   P++ T   
Sbjct: 195 CRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG-QRPDSITLVT 253

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           VL + A +     G  IH + I+ G    + I  AL   YS  G +  A  +F+G   + 
Sbjct: 254 VLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKT 313

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+N++++GY Q  EP  A+ +F KM +  I P   T +    AC +L D   GK  H 
Sbjct: 314 VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHK 373

Query: 235 VVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            V + NLG   S++ +  ++I+MY+KC                                 
Sbjct: 374 FVDQLNLG---SDISVMNSLISMYSKCK-------------------------------- 398

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
           +++ A  +F+ ++ R  VSW AMI GY+Q G  S+AL  F +M+SLG+ PD  TMV+V+ 
Sbjct: 399 RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           A   L      K +H   I + +  +NIF+TTA++DMY+KCG+I  A  +F  I    + 
Sbjct: 459 ALAELSVTRHAKWIHGLIIRSCL-DKNIFVTTALVDMYSKCGAIHMARKLFDMISD--RH 515

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  +N++I G   HGLG  ++ +F +M+   ++P+ +T+++V+ ACSH GLV+EG + F+
Sbjct: 516 VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFK 575

Query: 474 SM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM  +YG++P M+HYG MVDLL R GR+ EA+  I++MP      ++ A   AC++H+N 
Sbjct: 576 SMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNI 635

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++GE A +KL +L PD G ++VLL+N+ A T +W +  +VRK M+  G++K PG S +E 
Sbjct: 636 EVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F +   +HPQ+K I   L+++  ++K+AGYVP+T  ++ DV+++ +E +++ HS
Sbjct: 696 RNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVEDDVQEQLLNSHS 754

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFGL+N+    TI + KNLR+CGDCH A K +S +  REI+VRD  RFH FK G 
Sbjct: 755 EKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGI 814

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 815 CSCGDYW 821


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/711 (38%), Positives = 409/711 (57%), Gaps = 102/711 (14%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           +L+  H SL  LL +CKS +   QIH QI+ +GL N   + S+LI F A+S   N L  +
Sbjct: 28  KLLQNHPSL-TLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGN-LSYA 85

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            +LF  I+ PN FIWNT++RG S S SP  A+  Y  ML  G V PN++TFPF+L SCA+
Sbjct: 86  LLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCAK 144

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-------------------------- 155
           + + + G QIH H++K GLE D F+  +LI+ Y+                          
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 156 IFGY-----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           I GY     +++A ++FE    RD VS+N +I GYAQ      AL  F++M+ + + P+ 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V + SAC +     +G    + +  +   +GSN+ L  A+I+MY+KCG         
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDH--GLGSNLRLVNALIDMYSKCG--------- 313

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                   +++AR LF+ + ++D++SW  MI GYS +  + +AL
Sbjct: 314 -----------------------DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-RNIFLTTAVID 389
            LF KM+   + P++VT V++L AC  LGALD GK +H  YI+    G  N  L T++ID
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHA-YIDKKFLGLTNTSLWTSLID 409

Query: 390 MYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           MYAKCG+I+ A  VF  + PK+L +   +N++ISGLA HG    ++ +FR+M   G +PD
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGS---WNAMISGLAMHGHANMALELFRQMRDEGFEPD 466

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            +TFV VL ACSH GLVE G+Q F SM+ +Y I P+++HYGCM+DLL R G  DEA  L+
Sbjct: 467 DITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALM 526

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
           ++M    +  IW +LL ACR+H N ++GE A + L +LEP++   YVLLSN+ A   RW+
Sbjct: 527 KNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWD 586

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL-KSA 626
           +  ++R  ++D G++K                          ++I  ML ++     +  
Sbjct: 587 DVARIRTKLNDKGMKK-------------------------XQDIYKMLDEIDQSFGERP 621

Query: 627 GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           G VP+T +V++D+DEE KE  +S+HSEKLA+AFGLI+++ + TIRI KNLR
Sbjct: 622 GXVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/661 (36%), Positives = 413/661 (62%), Gaps = 15/661 (2%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           ++S  +++L  CK+  Q  Q+H Q +  G+  + +  + +  F  S     +  +  LF 
Sbjct: 33  DYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFV 92

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SF 125
           +I  P++ +WN +++G+S+ D   E + LY +ML +G V+P++ TFPF+LN   R   + 
Sbjct: 93  KIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG-VTPDSHTFPFLLNGLKRDGGAL 151

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G ++HCH++KFGL  +L+++NAL+  YS+ G ++ A  VF+     D+ S+N +I+GY
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VG 244
            ++KE   ++ L  +M+ + + P + T + + SAC+++ D  + K+ H  V +   C   
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE---CKTE 268

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ L+ A++N YA CG M++A R+F +M  ++   +W+S++ GY   G ++ AR  FDQ
Sbjct: 269 PSLRLENALVNAYAACGEMDIAVRIFRSMK-ARDVISWTSIVKGYVERGNLKLARTYFDQ 327

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD +SWT MI GY + G F+++LE+F +M+S G+ PDE TMV+VL AC  LG+L+ G
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + + + YI+      ++ +  A+IDMY KCG  + A  VF+ + +  K    + +++ GL
Sbjct: 388 EWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT--WTAMVVGL 444

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           A +G G+ +I VF +M+ M ++PD +T++ VL AC+H G+V++ ++FF  M  ++ I+P 
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           + HYGCMVD+L R G + EAY +++ MP + NS++W ALL A RLH +  + E+A +K+L
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +LEPD+GA Y LL N+ A   RW++ R+VR+ + D  I+K PG+S IE NG  H F+A  
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           KSH Q++EI + L+++  +   A Y+P+T +++F+   +E E     HS+   L    I 
Sbjct: 625 KSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGNKELEE----HSQVTTLRTNPIE 680

Query: 664 S 664
           S
Sbjct: 681 S 681


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 415/710 (58%), Gaps = 44/710 (6%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++S     Q  QIH +++  GL    S   +      S     +  +R +F  +  P 
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGL--QFSGFLITKLIHASSSFGDITFARQVFDDLPRPQ 83

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           IF WN ++RGYSR++  Q+AL++Y++M L++  VSP++FTFP +L +C+ LS  + G  +
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLAR--VSPDSFTFPHLLKACSGLSHLQMGRFV 141

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVK 189
           H  + + G + D+F++N LI  Y+    + +A  VFEG     R +VS+  +++ YAQ  
Sbjct: 142 HAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNG 201

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           EP  AL +F  M+   ++PD    V++ +A T L D + G+  HA V K    +  ++L+
Sbjct: 202 EPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++  MYAKCG                                ++  A+ LFD+M   +
Sbjct: 262 --SLNTMYAKCG--------------------------------QVATAKILFDKMKSPN 287

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           L+ W AMISGY++ G   +A+++F +M +  + PD +++ + + AC  +G+L+  + +++
Sbjct: 288 LILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE 347

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            Y+    +  ++F+++A+IDM+AKCGS++ A  VF +     + V +++++I G   HG 
Sbjct: 348 -YVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD--RDVVVWSAMIVGYGLHGR 404

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
              +I+++R ME  G+ P+ VTF+ +L AC+H G+V EG  FF  M ++ I PQ +HY C
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYAC 464

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           ++DLL R G LD+AY +I+ MP      +W ALL+AC+ HR+ ++GE A Q+L  ++P +
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
             HYV LSN+ A    W+   +VR  M + G+ K  G S++E  G L  F    KSHP+ 
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           +EIE  ++ +  +LK  G+V N    + D+++EE E  +  HSE++A+A+GLI++     
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTP 644

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +RITKNLR C +CH A KL+S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 173/368 (47%), Gaps = 12/368 (3%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           S+L      + LKQ   IH  +V  GL   I    LIS   +      +  ++ILF ++ 
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLE--IEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +PN+ +WN ++ GY+++   +EA+ ++  M++K  V P+  +    +++CA++ S +   
Sbjct: 285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-VRPDTISITSAISACAQVGSLEQAR 343

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            ++ ++ +     D+FI +ALI  ++  G +  A  VF+ +L RD+V ++ +I GY    
Sbjct: 344 SMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHG 403

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ L+R M+   + P+  TF+ +  AC      R G  F  ++  +   +      
Sbjct: 404 RAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHK--INPQQQH 461

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQM 305
              VI++  + G ++ A  V   M +      W +++S   +   +E     A+QLF  +
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLF-SI 520

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D  +   +  + + Y+    + +  E+  +M+  G++ D       +R    L A   G 
Sbjct: 521 DPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG--RLEAFRVGD 578

Query: 366 RLHQQYIE 373
           + H +Y E
Sbjct: 579 KSHPRYEE 586


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/702 (37%), Positives = 408/702 (58%), Gaps = 73/702 (10%)

Query: 21  LKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           L+    IH Q++ +GL N + + S+LI F  LS   +GL  +  +F  I  PN+ IWNT+
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
            RG++ S  P  AL LY  M+S G++ PN++TFPF+L SCA+  +FK G QIH H++K G
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG 121

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY--------------------- 178
            + DL++  +LI  Y   G + +AHKVF+ S  RD+VSY                     
Sbjct: 122 CDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFD 181

Query: 179 ----------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
                     N +I+GYA+      AL LF+ M  + ++PD  T V + SAC +     +
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 241

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G+Q H+ +  +    GSN+ +  A+I++Y+KCG                           
Sbjct: 242 GRQVHSWIDDH--GFGSNLKIVNALIDLYSKCG--------------------------- 272

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                ++E A  LF+ +  +D++SW  +I GY+ +  + +AL LF +M   G  P++VTM
Sbjct: 273 -----ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 327

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           +++L AC  LGA+D G+ +H  YI+  + G      L T++IDMYAKCG I+ A  VF  
Sbjct: 328 LSILPACAHLGAIDIGRWIHV-YIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNS 386

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           I    K++S +N++I G A HG  + S  +F  M   G++PD +TFV +L ACSH G+++
Sbjct: 387 ILH--KSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLD 444

Query: 467 EGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            G+  F SM  +Y + P++EHYGCM+DLL   G   EA  +I +M  + + VIW +LL A
Sbjct: 445 LGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKA 504

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           C++H N ++GE   Q L+ +EP++   YVLLSN+ A   RW E    R L++D G++K P
Sbjct: 505 CKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVP 564

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S IE +  +H F+   K HP+ +EI  ML++M + L+ AG+VP+T +V+ +++EE KE
Sbjct: 565 GCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKE 624

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
             + +HSEKLA+AFGLI+++    + I KNLR+C +CH A+K
Sbjct: 625 GALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 409/706 (57%), Gaps = 42/706 (5%)

Query: 48  FFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP 107
            FA SG    L  +R +F+++   +   W  ++ G +R+    EA+     M + G  +P
Sbjct: 1   MFAKSG---RLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGF-TP 56

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY----------SIF 157
             FT   VL+SCA   +   G ++H  ++K GL   + + N++++ Y          ++F
Sbjct: 57  TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116

Query: 158 ---------------------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
                                G ++ A  +FE    R +VS+N +I GY Q      AL 
Sbjct: 117 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 176

Query: 197 LFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
           LF +M  +S + PD FT  ++ SAC  L + RIGKQ HA + +    +  N  +  A+I+
Sbjct: 177 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE--MAYNSQVTNALIS 234

Query: 256 MYAKCGLMNMAERVFS-TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
            YAK G +  A R+   +M    +  ++++++ GY + G +E AR++F  M+ RD+V+WT
Sbjct: 235 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 294

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           AMI GY Q G   +A++LF  M + G  P+  T+ AVL  C  L  LD+GK++H + I +
Sbjct: 295 AMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRS 354

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
           +   ++  ++ A+I MYA+ GS   A  +F ++    +T++ + S+I  LAQHG GE ++
Sbjct: 355 L-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT-WTSMIVALAQHGQGEEAV 412

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDL 493
            +F EM   G++PD +T+V VL ACSH G V EGK++++ + N + I P+M HY CMVDL
Sbjct: 413 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 472

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           LAR G   EA   I+ MP + +++ W +LL+ACR+H+NA++ E+A +KLL ++P++   Y
Sbjct: 473 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 532

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
             ++N+ +   RW +A ++ K   +  ++K  G+S+      +H F A    HPQ   + 
Sbjct: 533 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 592

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
            M   M  ++K AG+VP+   V+ DVD+E KE ++S HSEKLA+AFGLI++  K T+R+ 
Sbjct: 593 AMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVM 652

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR+C DCH A K +S++  REI+VRDA RFH F+ G CSC D+W
Sbjct: 653 KNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/611 (42%), Positives = 373/611 (61%), Gaps = 48/611 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGL-----EFDLFIRNALIHFYSIFGYINNAHKVFEG 169
           +L SCA  S FK   QIH   I+ G+     +   ++   L+ F S   Y   AH++F  
Sbjct: 45  LLLSCAS-SKFKFR-QIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSY---AHQIFSQ 99

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
               ++ ++NT+I GYA+ + P PAL L+R+M  SCI+PD  T+  +  A  +L D R G
Sbjct: 100 IQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREG 159

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           ++ H++  +N     S + ++  +++MYA CG                            
Sbjct: 160 EKVHSIAIRN--GFESLVFVQNTLVHMYAACG---------------------------- 189

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                 E A +LF+ M +R+LV+W ++I+GY+  G  ++AL LF +M   G+ PD  TMV
Sbjct: 190 ----HAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMV 245

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++L AC  LGAL  G+R H  Y+  V    N+    A++D+YAKCGSI  A  VF ++ +
Sbjct: 246 SLLSACAELGALALGRRAHV-YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEE 304

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K+V  + S+I GLA +G G+ ++ +F+E+E  GL P  +TFV VL ACSH G+V+EG 
Sbjct: 305 --KSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGF 362

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            +F+ M   YGI P++EHYGCMVDLL R G + +A+  IQ+MP   N+V+WR LL AC +
Sbjct: 363 DYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTI 422

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H +  +GE+A  +LL LEP H   YVLLSN+ A   RW +  +VR+ M   G++K PG S
Sbjct: 423 HGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHS 482

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            +E    LH F+   +SHPQT+EI + L ++T  LK  GYVP+   V+ D++EEEKET +
Sbjct: 483 LVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETAL 542

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           SYHSEK+A+AF LIN+ +   IR+ KNLR+C DCHLA KL+S+++ REI+VRD  RFH F
Sbjct: 543 SYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHF 602

Query: 709 KKGNCSCMDFW 719
           K G+CSC D+W
Sbjct: 603 KDGHCSCKDYW 613



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 230/439 (52%), Gaps = 50/439 (11%)

Query: 12  LALLESCKSLK-QALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +ALL SC S K +  QIH   +  G+   +    + + F  LS C    +  +I FSQI 
Sbjct: 43  IALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQI-FSQIQ 101

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           NPNIF WNT++RGY+ S++P  AL LY  M     + P+  T+PF+L + A+L   + G 
Sbjct: 102 NPNIFTWNTMIRGYAESENPMPALELYRQM-HVSCIEPDTHTYPFLLKAIAKLMDVREGE 160

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++H   I+ G E  +F++N L+H Y+  G+  +AHK+FE    R+LV++N++INGYA   
Sbjct: 161 KVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 220

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
            P  AL LFR+M    ++PD FT V++ SAC EL    +G++ H  + K +G  G N+  
Sbjct: 221 RPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK-VGLDG-NLHA 278

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A++++YAKCG +  A +VF  M   KS  +W+S+I G                     
Sbjct: 279 GNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLA------------------- 318

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG----K 365
                  ++G+ +     +ALELF ++E  G+ P E+T V VL AC   G +D G    K
Sbjct: 319 -------VNGFGK-----EALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFK 366

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           R+ ++Y   +V    I     ++D+  + G +  A      +P     V ++ +++    
Sbjct: 367 RMKEEY--GIV--PKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAV-VWRTLLGACT 421

Query: 426 QHG---LGETSIAVFREME 441
            HG   LGE + A   ++E
Sbjct: 422 IHGHLALGEVARAQLLQLE 440


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/616 (40%), Positives = 377/616 (61%), Gaps = 7/616 (1%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P   ++  V      L+  K G Q+H H++  GL+    + + ++ FY+  G I+++  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           F G      + +N++I  YA+       +  +  M       D FTF  +  +  EL   
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +GK  H ++ + +G +  ++ + T++I +Y KCG +N A +VF  M + +  ++W++++
Sbjct: 188 WMGKCVHGLILR-IG-LQFDLYVATSLIILYGKCGEINDAGKVFDNMTI-RDVSSWNALL 244

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPD 344
           +GYT+ G I+ A  +F++M  R++VSWT MISGYSQ G   QAL LF +M  E  G+ P+
Sbjct: 245 AGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPN 304

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
            VT+++VL AC  L  L+ G+++H+     +    N  +  A+  MYAKCGS+  A + F
Sbjct: 305 WVTIMSVLPACAQLSTLERGRQIHELACR-MGLNSNASVLIALTAMYAKCGSLVDARNCF 363

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            K+ +N K +  +N++I+  A +G G  +++ FREM   G++PD +TF  +L  CSH GL
Sbjct: 364 DKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGL 423

Query: 465 VEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+ G ++F  M   Y I P++EHY C+ DLL R GRL EA  L+  MP  A   IW +LL
Sbjct: 424 VDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLL 483

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
           AACR HRN ++ E A +KL  LEP++  +YVLLSNM AE  RW+E  ++R ++   G +K
Sbjct: 484 AACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKK 543

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            PG S+IE NG  H FL    SHPQ KEI + L+ +  K+K+AGY P+T  V+ D+ EEE
Sbjct: 544 SPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEE 603

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  +  HSEKLA+AFG++N+ ++  +R+TKNLRICGDCH A   +SEIY RE++VRD  
Sbjct: 604 KEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDIN 663

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G CSC D+W
Sbjct: 664 RFHHFKGGCCSCGDYW 679



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 45/373 (12%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRI 63
           +L ++ +   L     LK   Q+H  ++  GL    +  S++++F+A SG    +  S  
Sbjct: 70  ILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSG---DIDSSVS 126

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F+ I  P+  ++N+++R Y+R    +  +  Y SM S G    + FTFPFVL S   L 
Sbjct: 127 VFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTG-DYFTFPFVLKSSVELL 185

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD--------- 174
           S   G  +H  I++ GL+FDL++  +LI  Y   G IN+A KVF+    RD         
Sbjct: 186 SVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLA 245

Query: 175 ----------------------LVSYNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDA 210
                                 +VS+ T+I+GY+Q      AL LF +M  +DS ++P+ 
Sbjct: 246 GYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNW 305

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T +++  AC +L+    G+Q H +  + +G + SN  +  A+  MYAKCG +  A   F
Sbjct: 306 VTIMSVLPACAQLSTLERGRQIHELACR-MG-LNSNASVLIALTAMYAKCGSLVDARNCF 363

Query: 271 STMGMS-KSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGG 325
             +  + K+  AW++MI+ Y   G   +A   F +M Q     D +++T ++SG S  G 
Sbjct: 364 DKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGL 423

Query: 326 FSQALELFGKMES 338
               L+ F  M +
Sbjct: 424 VDVGLKYFNHMST 436


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/684 (37%), Positives = 402/684 (58%), Gaps = 55/684 (8%)

Query: 54  CKNGLFRSR--------ILFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI 104
           C   + R R         LF++ +D  N+F WN+++   +RS    EAL  ++SM  K  
Sbjct: 89  CAGAVLRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSM-RKLS 147

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           + PN  TFP  + SC+ L    SG Q H   + FG E DLF+ +AL+  YS  G + +A 
Sbjct: 148 LKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDAR 207

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--------QDSCIQPDAFTFVAM 216
            +F+    R++VS+ ++I GY Q  +   AL LF++          D  +  D    V++
Sbjct: 208 TLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSV 267

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC+ +++  I +  H  + K  G  G ++ ++  +++ YAKCG + ++ RVF  M   
Sbjct: 268 LSACSRVSEKSITEGVHGFLIKR-GFEG-DLGVENTLMDAYAKCGELGVSRRVFDGMA-E 324

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           +   +W+S+I+ Y + G    + ++F +M +   +++ A                     
Sbjct: 325 RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA--------------------- 363

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
                    VT+ AVL AC   G+   GK +H Q I+ +    N+F+ T++IDMY KCG 
Sbjct: 364 ---------VTLSAVLLACAHSGSQRLGKCIHDQVIK-MGLESNVFVGTSIIDMYCKCGK 413

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           ++ A   F ++ +  K V  ++++++G   HG  + ++ VF EM + G+KP+ +TFV+VL
Sbjct: 414 VEMARKAFDRMRE--KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVL 471

Query: 457 CACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSH GL+EEG  +F++M + + ++P +EHYGCMVDLL R G L EA+ LI+ M    +
Sbjct: 472 AACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPD 531

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
            V+W ALL ACR+H+N  +GEI+ +KL +L+P +  +YVLLSN+ A+  RWE+  ++R L
Sbjct: 532 FVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRIL 591

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           M +SG+ KPPG+S ++  G +H FL   + HPQ ++I   L+ ++MKL+  GYVP+   V
Sbjct: 592 MKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSV 651

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
           + DV  EEKE V+  HSEKLA+AFG++N+    TI I KNLR+CGDCH A K +S+I  R
Sbjct: 652 LHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDR 711

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           EI+VRD+ RFH F+ G CSC D+W
Sbjct: 712 EIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 188/378 (49%), Gaps = 51/378 (13%)

Query: 1   MKRLVLE--HSSLLALLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L L+   S+    ++SC +L       Q H Q +  G    +  SS L+  ++  G 
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG- 201

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-------SKGIVSP 107
              L  +R LF +I + NI  W +++ GY ++D    AL+L+   L         G V  
Sbjct: 202 --ELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCV 259

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           +      VL++C+R+S       +H  +IK G E DL + N L+  Y+  G +  + +VF
Sbjct: 260 DPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDP 226
           +G   RD++S+N++I  YAQ      ++ +F +M +D  I  +A T  A+  AC      
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 379

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           R+GK  H  V K +G + SN+ + T++I+MY KC                          
Sbjct: 380 RLGKCIHDQVIK-MG-LESNVFVGTSIIDMYCKC-------------------------- 411

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                 GK+E AR+ FD+M ++++ SW+AM++GY   G   +ALE+F +M   G+ P+ +
Sbjct: 412 ------GKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYI 465

Query: 347 TMVAVLRACVGLGALDFG 364
           T V+VL AC   G L+ G
Sbjct: 466 TFVSVLAACSHAGLLEEG 483



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 162/351 (46%), Gaps = 14/351 (3%)

Query: 10  SLLALLESCKSLKQ---ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +++++L +C  + +      +HG ++  G    +   + L+  +A  G    L  SR +F
Sbjct: 263 AMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCG---ELGVSRRVF 319

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  WN+++  Y+++    E++ ++  M+  G ++ N  T   VL +CA   S 
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 379

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  IH  +IK GLE ++F+  ++I  Y   G +  A K F+    +++ S++ ++ GY
Sbjct: 380 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 439

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   AL +F +M  + ++P+  TFV++ +AC+       G  +   +      V  
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD-VEP 498

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQL 301
            +     ++++  + G +  A  +   M +      W +++        ++     AR+L
Sbjct: 499 GVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKL 558

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAV 351
           F ++D ++   +  + + Y+  G +     +   M++ G + P   ++V +
Sbjct: 559 F-ELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 608


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/609 (40%), Positives = 381/609 (62%), Gaps = 11/609 (1%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
           H+ LL+LLE CK L    QI  Q++ +GL     +SS+LI+F ALS  +   +  +IL  
Sbjct: 53  HNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL-K 111

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS--PNNFTFPFVLNSCARLSS 124
            I+NPNIF WN  +RG+S S++P+E+ +LY  ML  G     P++FT+P +   CA L  
Sbjct: 112 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 171

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G  I  H++K  LE    + NA IH ++  G + NA KVF+ S  RDLVS+N LING
Sbjct: 172 SSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLING 231

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y ++ E   A+++++ M+   ++PD  T + + S+C+ L D   GK+F+  V +N   + 
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN--GLR 289

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
             + L  A+++M++KCG ++ A R+F  +   ++  +W++MISGY R G ++ +R+LFD 
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISGYARCGLLDVSRKLFDD 348

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M+++D+V W AMI G  Q      AL LF +M++    PDE+TM+  L AC  LGALD G
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             +H+ YIE      N+ L T+++DMYAKCG+I  ALSVF+ I    +    + +II GL
Sbjct: 409 IWIHR-YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGI--QTRNSLTYTAIIGGL 465

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           A HG   T+I+ F EM   G+ PD +TF+ +L AC HGG+++ G+ +F  M + + + PQ
Sbjct: 466 ALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQ 525

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           ++HY  MVDLL R G L+EA  L++SMP +A++ +W ALL  CR+H N ++GE A +KLL
Sbjct: 526 LKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLL 585

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L+P     YVLL  M  E   WE+A++ R++M++ G++K PG S IE NG +  F+   
Sbjct: 586 ELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRD 645

Query: 604 KSHPQTKEI 612
           KS P++++I
Sbjct: 646 KSRPESEKI 654


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/702 (36%), Positives = 400/702 (56%), Gaps = 42/702 (5%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           KS  QA Q+H Q + +    H S+S +IS +        L  + ++F  +++P +  W +
Sbjct: 19  KSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKL---LHEALLVFKTLESPPVLAWKS 75

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++R ++       AL  +  M + G   P++  FP VL SC  +   + G  +H  I++ 
Sbjct: 76  VIRCFTDQSLFSRALASFVEMRASG-RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G++ DL+  NAL++ YS    I++  KVFE    +D+VSYNT+I GYAQ      AL + 
Sbjct: 135 GMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMV 194

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           R+M  S ++PDAFT  ++    +E  D   GK+ H  V +    + S++ + +++++MYA
Sbjct: 195 REMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK--GIDSDVYIGSSLVDMYA 252

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           K                                  +IE + ++F  + +RD +SW ++++
Sbjct: 253 K--------------------------------SARIEDSERVFSHLYRRDSISWNSLVA 280

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           GY Q G +++AL LF +M S  + P  V   +V+ AC  L  L  GK+LH  Y+    FG
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHG-YVLRGGFG 339

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
           RNIF+ +A++DMY+KCG+I  A  +F ++  NL     + +II G A HG G  ++++F 
Sbjct: 340 RNIFIASALVDMYSKCGNIQAARKIFDRM--NLHDEVSWTAIIMGHALHGHGHEAVSLFE 397

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARD 497
           EM+  G+KP+ V FV VL ACSH GLV+E   +F SM   YG+  ++EHY  + DLL R 
Sbjct: 398 EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRA 457

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           G+L+EAY  I  M  +    +W  LL++C +H+N ++ E   +K+  ++ ++   YVL+ 
Sbjct: 458 GKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMC 517

Query: 558 NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
           NM A   RW+E  ++R  +   G++K P  S+IE     H F++  +SHP    I   LK
Sbjct: 518 NMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLK 577

Query: 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
            +  +++  GYV +T  V+ DVDEE K  ++  HSE+LA+AFG+IN+    TIR+TKN+R
Sbjct: 578 AVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 637

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IC DCH+A K +S+I  REI+VRD  RFH F +G+CSC D+W
Sbjct: 638 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 147/284 (51%), Gaps = 9/284 (3%)

Query: 245 SNMLLKTAVIN---MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
           S  L+KT + N   + +K     +  +   T  +S ++A  S +IS YT    +  A  +
Sbjct: 4   SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSA--SIVISIYTNLKLLHEALLV 61

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F  ++   +++W ++I  ++    FS+AL  F +M + G  PD     +VL++C  +  L
Sbjct: 62  FKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
            FG+ +H  +I  +    +++   A+++MY+K   ID+   VF  +P+  K V  +N++I
Sbjct: 122 RFGESVHG-FIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPR--KDVVSYNTVI 178

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           +G AQ G+ E ++ + REM    LKPD  T  +VL   S    V +GK+    ++  GI 
Sbjct: 179 AGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGID 238

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             +     +VD+ A+  R++++  +   + Y  +S+ W +L+A 
Sbjct: 239 SDVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAG 281


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 287/779 (36%), Positives = 418/779 (53%), Gaps = 80/779 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
            L L+    +L Q  Q H QI+ +GL++ + +   ++   LS  K  + ++ +LFS I N
Sbjct: 13  FLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTH-KLSHLK-AIDQASLLFSTIPN 70

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P++F++N L+R +S ++SP  A+ LYT +     + P+NFT+ FV++  + L        
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHA 130

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
                I  G   DLF+ +A++  Y  F  +  A KVF+G L RD V +NT+++G   VK 
Sbjct: 131 HS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGL--VKN 185

Query: 191 PC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELND-----------PRIGKQFHAVVY 237
            C   A+ +F  M    I  D+ T  A+     EL D            ++G   HA V 
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 238 KNLGCVGS------------------NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
             L C+ S                  +++   A+I+ Y        + R+F  + +S   
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 280 AAWSSMI--------------------------------------SGYTREGKIERARQL 301
              SS++                                      + Y+R  +IE AR L
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLL 365

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           FD+  ++ L SW AMISGY+Q G   +A+ LF +M+   + P+ VT+ ++L AC  LGAL
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGAL 425

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             GK +H   I    F  NIF++TA+IDMYAKCGSI  A  +F  +P+  K    +N++I
Sbjct: 426 SLGKWVHD-LINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPE--KNAVTWNAMI 482

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGI 480
           SG   HG G  ++ +F EM    + P GVTF++VL ACSH GLV EG + F SM+ ++G 
Sbjct: 483 SGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGF 542

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P  EHY CMVDLL R G LD+A   I+ MP +    +W ALL AC +H++A +  +A  
Sbjct: 543 EPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASD 602

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           KL +L+P +  +YVLLSN+ +    + EA  VR ++    + K PG + IE   TLH F 
Sbjct: 603 KLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFT 662

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           +  +SHPQ   I  ML+ +T K++ AG+   T   + DV+EEEKE +V  HSEKLA+AFG
Sbjct: 663 SGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFG 722

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI S     IRI KNLR+C DCH A K +S+I  R I+VRDA RFH FK G CSC D+W
Sbjct: 723 LITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/720 (36%), Positives = 419/720 (58%), Gaps = 44/720 (6%)

Query: 19  KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRI---LFSQIDNPNIF 74
           +S++QA Q+H  +  SG + H  S+  L++  +L+ C +     R    LF ++ +P  F
Sbjct: 10  RSVRQASQLHAILTTSGRIAHRPSAEHLLN--SLTNCLSAPRHLRYVLSLFDRLPHPTTF 67

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
           + +T +R   ++ +  +  VL    + +G V  + FTF FV   CA  +       +H  
Sbjct: 68  LHDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAA 127

Query: 135 IIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFE--------------GSLA------- 172
            ++  L      + N LIH Y+  G  ++A + F+              G L        
Sbjct: 128 CLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDE 187

Query: 173 ----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
                     R++VS+ +LI GY++   P  A++ F  M    ++PD    +   SAC++
Sbjct: 188 ARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSK 247

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L +   G+  H +V K    +   +++   +I+MYAKCG +  A+ VF  +G  +    W
Sbjct: 248 LKNLEFGRLLHLLVGKKRIQMTDKLVV--TLIDMYAKCGDIAQAQAVFDAVGRGQKPEPW 305

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + +I GY + G ++ AR LFDQM  RD++++ +MI+GY   G    AL+LF ++   G+ 
Sbjct: 306 NVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMR 365

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D  T+V++L AC  LGAL  G+ LH   IE  +   +++L TA++DMY KCG +D A +
Sbjct: 366 ADNFTVVSLLTACASLGALPQGRALHAS-IEQRIVEEDVYLVTALVDMYMKCGRVDEATA 424

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF+++ +  + V  ++++I+GLA +G+G  ++  F +M+  G +P  VT++ VL ACSH 
Sbjct: 425 VFHRMGE--RDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
            L+ EG+Q F  M + + + PQ+EHYGCM+DLLAR G LDEA  L+Q+MP   N+VIW +
Sbjct: 483 SLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWAS 542

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           +L+ACR+H+N  +   A + LL L P+  A YV L N+  ++ +W EA+++R LM++ G+
Sbjct: 543 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGV 602

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G+S I   G +H+F+ + +SHP T EI  M++++  +LKSAGY P T ++  DVDE
Sbjct: 603 KKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATSRIAVDVDE 662

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           EEKE  +  HSEK+A+AFGLI+      I I KNLR+C DCH A KL+S+++ REI+VRD
Sbjct: 663 EEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSAIKLISQLWNREIIVRD 722


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 405/638 (63%), Gaps = 11/638 (1%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           ++S  +++L  CK+  Q  Q+H Q +  G+  + +  + +  F  S     +  +  LF 
Sbjct: 33  DYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFV 92

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SF 125
           +I  P++ +WN +++G+S+ D   E + LY +ML +G V+P++ TFPF+LN   R   + 
Sbjct: 93  KIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG-VTPDSHTFPFLLNGLKRDGGAL 151

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G ++HCH++KFGL  +L+++NAL+  YS+ G ++ A  VF+     D+ S+N +I+GY
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VG 244
            ++KE   ++ L  +M+ + + P + T + + SAC+++ D  + K+ H  V +   C   
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE---CKTE 268

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ L+ A++N YA CG M++A R+F +M  ++   +W+S++ GY   G ++ AR  FDQ
Sbjct: 269 PSLRLENALVNAYAACGEMDIAVRIFRSMK-ARDVISWTSIVKGYVERGNLKLARTYFDQ 327

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD +SWT MI GY + G F+++LE+F +M+S G+ PDE TMV+VL AC  LG+L+ G
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + + + YI+      ++ +  A+IDMY KCG  + A  VF+ + +  K    + +++ GL
Sbjct: 388 EWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT--WTAMVVGL 444

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           A +G G+ +I VF +M+ M ++PD +T++ VL AC+H G+V++ ++FF  M  ++ I+P 
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           + HYGCMVD+L R G + EAY +++ MP + NS++W ALL A RLH +  + E+A +K+L
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +LEPD+GA Y LL N+ A   RW++ R+VR+ + D  I+K PG+S IE NG  H F+A  
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           KSH Q++EI + L+++  +   A Y+P+T +++F+  +
Sbjct: 625 KSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGD 662


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/640 (40%), Positives = 390/640 (60%), Gaps = 12/640 (1%)

Query: 88  SPQEALVLYTSMLSKGIVS--PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +P+ +L L   +L + I+   P+  ++  +     R +  K G Q H  I+  GL+ + F
Sbjct: 54  TPKPSLNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAF 113

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ---VKEPCPALWLFRKMQ 202
           +   ++  Y+  G +++A  VF+       + YN++I  Y +          L  + +M 
Sbjct: 114 LAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMH 173

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              +  D FT   +  +C +L+   +G+  H    + +G  G +  +  ++I+MY KCG+
Sbjct: 174 FLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR-VGLEG-DFYVGASLIDMYVKCGV 231

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A ++F  M + +  A+W+++I+GY +EG+I  A  LF++M+ R++VSWTAMISGY+Q
Sbjct: 232 IGDARKLFDKM-IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQ 290

Query: 323 VGGFSQALELFGKMESLG--IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            G   QAL LF +M   G  + P+ VT+V+VL AC    AL+ G+R+H  +   +    N
Sbjct: 291 NGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD-FANGIGLHLN 349

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
             + TA+  MYAKC S+  A   F  I +N K +  +N++I+  A HG G  ++++F  M
Sbjct: 350 SSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENM 409

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
              G++PD VTF+ +L  CSH GL++ G   F  M   + ++P++EHY C+VDLL R GR
Sbjct: 410 LRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGR 469

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L EA  LI  MP  A   +W ALLAACR HRN +I E+A ++L  LEPD+  +YVLLSN+
Sbjct: 470 LVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNL 529

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            AE   WEE +++R L+   G++K PG S+IE NG  H F+ + KSHPQ KEI   L+ +
Sbjct: 530 YAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEAL 589

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             K+K AGY+P+T  V+ D+ EEEKE  ++ HSEKLA+AFGL+N+R    +R+TKNLRIC
Sbjct: 590 PEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRIC 649

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GDCH A K +S+IY REI+VRD  RFH FK G+CSC D+W
Sbjct: 650 GDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 217/468 (46%), Gaps = 22/468 (4%)

Query: 21  LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           +K   Q H QIV  GL  +   ++++++ +A SG    L  + ++F +IDNP+  ++N++
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSG---DLDSAVVVFDRIDNPSSLLYNSI 149

Query: 80  MRGYSR---SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           +R Y+R          L  Y  M   G++  +NFT PFVL SCA LS    G  +H   +
Sbjct: 150 IRAYTRHGXXXXXXXXLEAYARMHFLGLLG-DNFTLPFVLKSCADLSRVCMGRCVHGQGL 208

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           + GLE D ++  +LI  Y   G I +A K+F+  + RD+ S+N LI GY +  E   A  
Sbjct: 209 RVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAED 268

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           LF +M+   I     ++ AM S  T+             + ++   +  N +   +V+  
Sbjct: 269 LFERMEHRNI----VSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPA 324

Query: 257 YAKCGLMNMAERVF---STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLV 311
            A+   +    R+    + +G+  +++  +++   Y +   +  AR  FD + Q  ++L+
Sbjct: 325 CAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLI 384

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           +W  MI+ Y+  G   +A+ +F  M   G+ PD VT + +L  C   G +D G       
Sbjct: 385 AWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDM 444

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
                    +     V+D+  + G +  A  +  ++P      S++ ++++    H    
Sbjct: 445 GTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGP-SVWGALLAACRSH--RN 501

Query: 432 TSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNY 478
             IA      L  L+PD    +V +    +  G+ EE K+   ++L Y
Sbjct: 502 LEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKK-LRALLKY 548


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/717 (35%), Positives = 422/717 (58%), Gaps = 16/717 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           S +L+     + LK    IHG  +  G+  ++  S+ L++ +    C   +  ++ +F  
Sbjct: 246 SCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLC---VREAQAVFDL 302

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + N+  WN+L   Y     PQ+ L ++  M   G V P+      +L +C++L   KS
Sbjct: 303 MPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG-VKPDPMAMSSILPACSQLKDLKS 361

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH   +K G+  D+F+  AL++ Y+    +  A  VF+    R++V++N+L + Y  
Sbjct: 362 GKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVN 421

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P   L +FR+M  + ++PD  T +++  AC++L D + GK  H    ++ G V  ++
Sbjct: 422 CGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRH-GMV-EDV 479

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD- 306
            +  A++++YAKC  +  A+ VF  +   +  A+W+ +++ Y    + E+   +F QM+ 
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIP-HREVASWNGILTAYFTNKEYEKGLYMFSQMNR 538

Query: 307 ---QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
              + D ++W+ +I G  +     +A+E+F KM+++G  PDE T+ ++LRAC     L  
Sbjct: 539 DEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRM 598

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H  Y+       ++  T A++DMYAKCG +  + +VF  +P  +K V  +N++I  
Sbjct: 599 GKEIHC-YVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMP--IKDVFSWNTMIFA 655

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
              HG G+ ++++F +M L  +KPD  TF  VL ACSH  LVEEG Q F SM  ++ ++P
Sbjct: 656 NGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEP 715

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           + EHY C+VD+ +R G L+EAYG IQ MP +  ++ W+A LA CR+++N ++ +I+ +KL
Sbjct: 716 EAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKL 775

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            +++P+  A+YV L N+L     W EA ++RKLM + GI K PG S+      +H F+A 
Sbjct: 776 FEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAG 835

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            KS+ ++ +I   L ++  K+K+AGY P+T  V+ D+D+EEK   +  HSEKLA+AFG++
Sbjct: 836 DKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGIL 895

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           N   + TIR+ KNLRICGDCH A K +S +    I+VRD++RFH FK GNCSC DFW
Sbjct: 896 NLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/520 (26%), Positives = 247/520 (47%), Gaps = 48/520 (9%)

Query: 11  LLALLESCKSLKQAL---QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
            +A+ ++C + + AL   Q H      G+   +S  +  I  +    C  G   +R +F 
Sbjct: 43  FMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEG---ARRVFD 99

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSF 125
            +   ++  WN+L   Y     PQ+ L ++  M L+K  V  N  T   +L  C+ L   
Sbjct: 100 DLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNK--VKANPLTVSSILPGCSDLQDL 157

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           KSG +IH  +++ G+  D+F+ +A ++FY+    +  A  VF+    RD+V++N+L + Y
Sbjct: 158 KSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCY 217

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                P   L +FR+M    ++PD  T   + SAC++L D + GK  H    K+ G V  
Sbjct: 218 VNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKH-GMV-E 275

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N+ +  A++N+Y  C  +  A+ VF                                D M
Sbjct: 276 NVFVSNALVNLYESCLCVREAQAVF--------------------------------DLM 303

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             R++++W ++ S Y   G   + L +F +M   G+ PD + M ++L AC  L  L  GK
Sbjct: 304 PHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK 363

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H   +++ +   ++F+ TA++++YA C  +  A +VF  +P   + V  +NS+ S   
Sbjct: 364 TIHGFAVKHGMV-EDVFVCTALVNLYANCLCVREAQTVFDLMPH--RNVVTWNSLSSCYV 420

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
             G  +  + VFREM L G+KPD VT +++L ACS    ++ GK      + +G+   + 
Sbjct: 421 NCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVF 480

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               ++ L A+   + EA  +   +P+      W  +L A
Sbjct: 481 VCNALLSLYAKCVCVREAQVVFDLIPH-REVASWNGILTA 519



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 208/434 (47%), Gaps = 39/434 (8%)

Query: 89  PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRN 148
           P EA+ +YTS  ++GI  P+   F  V  +CA         Q H    + G+  D+ I N
Sbjct: 21  PNEAIKIYTSSRARGI-KPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGN 79

Query: 149 ALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
           A IH Y     +  A +VF+  +ARD+V++N+L   Y     P   L +FRKM  + ++ 
Sbjct: 80  AFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKA 139

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           +  T  ++   C++L D + GK+ H  V ++ G V  ++ + +A +N YAKC  +  A+ 
Sbjct: 140 NPLTVSSILPGCSDLQDLKSGKEIHGFVVRH-GMV-EDVFVSSAFVNFYAKCLCVREAQT 197

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           VF                                D M  RD+V+W ++ S Y   G   +
Sbjct: 198 VF--------------------------------DLMPHRDVVTWNSLSSCYVNCGFPQK 225

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
            L +F +M   G+ PD VT+  +L AC  L  L  GK +H   +++ +   N+F++ A++
Sbjct: 226 GLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV-ENVFVSNALV 284

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           ++Y  C  +  A +VF  +P   + V  +NS+ S     G  +  + VFREM L G+KPD
Sbjct: 285 NLYESCLCVREAQAVFDLMPH--RNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPD 342

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            +   ++L ACS    ++ GK      + +G+   +     +V+L A    + EA  +  
Sbjct: 343 PMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFD 402

Query: 509 SMPYDANSVIWRAL 522
            MP+  N V W +L
Sbjct: 403 LMPH-RNVVTWNSL 415



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 156/339 (46%), Gaps = 39/339 (11%)

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  A+ ++   +   I+PD   F+A+  AC    D    KQFH                 
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFH----------------- 63

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
               +   +CG+M+               +  ++ I  Y +   +E AR++FD +  RD+
Sbjct: 64  ----DDATRCGVMS-------------DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDV 106

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V+W ++ + Y   G   Q L +F KM    +  + +T+ ++L  C  L  L  GK +H  
Sbjct: 107 VTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGF 166

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            + + +   ++F+++A ++ YAKC  +  A +VF  +P   + V  +NS+ S     G  
Sbjct: 167 VVRHGMV-EDVFVSSAFVNFYAKCLCVREAQTVFDLMPH--RDVVTWNSLSSCYVNCGFP 223

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490
           +  + VFREM L G+KPD VT   +L ACS    ++ GK      L +G+   +     +
Sbjct: 224 QKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNAL 283

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           V+L      + EA  +   MP+  N + W + LA+C ++
Sbjct: 284 VNLYESCLCVREAQAVFDLMPH-RNVITWNS-LASCYVN 320


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 272/722 (37%), Positives = 422/722 (58%), Gaps = 55/722 (7%)

Query: 9   SSLLALLESCKSLKQAL---QIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRI 63
           SSL  +L+ C  L   +   Q+H Q +  G    +S  +S +  +      ++G      
Sbjct: 93  SSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDG----ER 148

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W +L+ GY ++   ++AL L++ M  +GI  PN FTF  VL   A   
Sbjct: 149 VFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI-KPNPFTFAAVLGGLAADG 207

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G Q+H  +IK GL+  +F+ N++++ YS    +++A  VF+    R+ VS+N++I 
Sbjct: 208 AVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIA 267

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+        A  LF +M+   ++     F  +   C  + +    KQ H  V KN    
Sbjct: 268 GFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKN---- 323

Query: 244 GSNMLL--KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
           GS+  L  KTA++  Y+KC  ++ A ++F              M+ G             
Sbjct: 324 GSDFDLNIKTALMVAYSKCSEIDDAFKLFC-------------MMHGV------------ 358

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVG-LG 359
                 +++VSWTA+ISGY Q G   +A+ LF +M    G+ P+E T  +VL AC     
Sbjct: 359 ------QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTA 412

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKTVSLFN 418
           +++ GK+ H   I++  F   + +++A++ MYAK G+I++A  VF + + ++L +   +N
Sbjct: 413 SVEQGKQFHSCSIKSG-FSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVS---WN 468

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
           S+ISG AQHG G+ S+ +F EM    L+ DG+TF+ V+ AC+H GLV EG+++F+ M+ +
Sbjct: 469 SMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKD 528

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y I P MEHY CMVDL +R G L++A  LI  MP+ A + IWR LLAACR+H N ++GE+
Sbjct: 529 YHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGEL 588

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A +KL+ L+P   A YVLLSN+ A    W+E  +VRKLMD   ++K  G+S+IE      
Sbjct: 589 AAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 648

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+A   SHPQ+  I L L++++++LK AGY P+T  V+ DV+EE KE ++S HSE+LA+
Sbjct: 649 SFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAI 708

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI +     I+I KNLR+CGDCH   KL+S+I  R+I+VRD+ RFH FK G+CSC D
Sbjct: 709 AFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGD 768

Query: 718 FW 719
           +W
Sbjct: 769 YW 770



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 171/364 (46%), Gaps = 37/364 (10%)

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           ++ ++F+ +  + L   N L+  +++  +   AL LF  ++ S    D  +   +   C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L D  +GKQ H        C+               KCG +             +  + 
Sbjct: 104 CLFDRIVGKQVHC------QCI---------------KCGFV-------------EDVSV 129

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            +S++  Y +   +E   ++FD+M  +++VSWT++++GY Q G   QAL+LF +M+  GI
Sbjct: 130 GTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI 189

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+  T  AVL      GA++ G ++H   I++ +    IF+  ++++MY+K   +  A 
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL-DSTIFVGNSMVNMYSKSLMVSDAK 248

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
           +VF  + +N   VS +NS+I+G   +GL   +  +F  M L G+K     F TV+  C++
Sbjct: 249 AVFDSM-ENRNAVS-WNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
              +   KQ    ++  G    +     ++   ++   +D+A+ L   M    N V W A
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366

Query: 522 LLAA 525
           +++ 
Sbjct: 367 IISG 370


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/636 (41%), Positives = 389/636 (61%), Gaps = 17/636 (2%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
           ++A+  Y  ML++G + P+ +TFP +L + AR SS      +H H++KFG+  +  +  +
Sbjct: 25  EDAVAGYARMLARGAM-PDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATS 83

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           L+  Y+  G    A  +         V +N LI+G+ + +    A   F  M  +   P 
Sbjct: 84  LVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPT 143

Query: 210 AFTFVAMFSACTE-LNDPRIGKQFHAVVYKNLGCVGSNML----LKTAVINMYAKCGLMN 264
             T+V++ SAC +   D  +G Q H  V      VGS +L    ++ A+++MYA+C  M 
Sbjct: 144 PVTYVSVLSACGKGTGDVLLGMQVHGRV------VGSGVLPDLRVENALVDMYAECADME 197

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A ++F  M + +S  +W+S++SG TR G+++ AR LF +M +RD VSWTAMI GY Q  
Sbjct: 198 SAWKLFDGMQV-RSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAA 256

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
            F +ALE+F +M+   +  DE TMV+V+ AC  LGAL+ G+ + + Y+       + F+ 
Sbjct: 257 RFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWV-RVYMSRQGIKMDAFVG 315

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A+IDMY+KCGSI+ AL VF  +    K    + +II GLA +G GE +I +F  M  + 
Sbjct: 316 NALIDMYSKCGSIERALDVFKDMHHRDKFT--WTAIILGLAVNGYGEEAIEMFHRMIGVS 373

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEA 503
             PD VTF+ VL AC+H GLV++G++FF SM   Y I P + HYGC++DL  R G++ EA
Sbjct: 374 ETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEA 433

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
              I  MP   NS IW  LLAACR+H N++IGE+  ++LL ++P++   Y LLSN+ A+ 
Sbjct: 434 LDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKC 493

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RWE+ R++R  + + GI+K PG S IE NG +H F+A  +SHP +KEI   L+ +   L
Sbjct: 494 NRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDL 553

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
            + GY P+  +V  +V EEEK+ V+ +HSEKLA+AF L++S     IRI KNLR+C DCH
Sbjct: 554 NNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCH 613

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            A KL+S +Y RE++VRD  RFH F+ G CSC D+W
Sbjct: 614 NAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 155/352 (44%), Gaps = 38/352 (10%)

Query: 24  ALQIHGQIVHSGLNHHI-----------------------SSSQLISFFALSGCKNGLFR 60
            +Q+HG++V SG+   +                          Q+ S  + +   +GL R
Sbjct: 164 GMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTR 223

Query: 61  ------SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
                 +R LF ++   +   W  ++ GY ++   +EAL ++  M     VS + FT   
Sbjct: 224 LGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSN-VSADEFTMVS 282

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           V+ +CA+L + + G  +  ++ + G++ D F+ NALI  YS  G I  A  VF+    RD
Sbjct: 283 VITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRD 342

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
             ++  +I G A       A+ +F +M      PD  TF+ + +ACT       G++F  
Sbjct: 343 KFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFL 402

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS-----GY 289
            + +    +  N++    +I+++ + G +  A      M M+ ++  W ++++     G 
Sbjct: 403 SMRETYN-IAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGN 461

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +  G++   R L  QMD  +   +T + + Y++   +     L   +   GI
Sbjct: 462 SEIGELVTERLL--QMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGI 511


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/713 (36%), Positives = 415/713 (58%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +++L LL S +  + A  +H  I   G  ++    + LI  +A+ G  N    +R  F  
Sbjct: 45  TTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNS---ARQAFDA 101

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I   ++  W  ++  Y+ +D  Q++L L+  M   G  +PN+FTF  VL +C  L +F  
Sbjct: 102 IACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGF-NPNHFTFAGVLKACIGLEAFSV 160

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++K   E DL++   L+  Y+ FG  N+  +VFE     D++ ++ +I+ YAQ
Sbjct: 161 GKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQ 220

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   A+ LF +M+ + + P+ FTF ++  +C  + + ++GKQ H  V K +G  G N+
Sbjct: 221 SNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDG-NV 278

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A++++YAKCG                                +++ + +LF ++  
Sbjct: 279 FVSNALMDVYAKCG--------------------------------RLDNSMKLFMELPN 306

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R+ V+W  MI GY Q G   +AL L+  M    +   EVT  +VLRAC  L A++ G ++
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   ++ + + +++ +  A+IDMYAKCGSI  A  VF  + +  +    +N++ISG + H
Sbjct: 367 HSLSLKTI-YDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS--WNAMISGYSMH 423

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           GL   ++  F+ M+     P+ +TFV++L ACS+ GL++ G+ +F+SM+ +YGI+P MEH
Sbjct: 424 GLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEH 483

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMV LL R G LD+A  LI+ +P + N  +WRALL AC +H +  +G ++ Q++L ++
Sbjct: 484 YTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQID 543

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A +VLLSN+ A T RW     VRK M + G++K PG S+IE+ G +H F     SH
Sbjct: 544 PQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSH 603

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P  K I  ML+ + MK + AGYVP+   V+ DV+++EK+  +  HSE+LALAFGLI + S
Sbjct: 604 PDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPS 663

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +  IRI KNLRIC DCH A KL+S+I +R+I++RD  RFH F+ G CSC D+W
Sbjct: 664 RGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 216/444 (48%), Gaps = 45/444 (10%)

Query: 8   HSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRI 63
           H +   +L++C  L+       +HG ++ +     +     L+  +   G  N + R   
Sbjct: 142 HFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLR--- 198

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   ++  W+ ++  Y++S+  +EA+ L+  M  +  V PN FTF  VL SCA + 
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQM-RRAFVLPNQFTFASVLQSCASIE 257

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G Q+HCH++K GL+ ++F+ NAL+  Y+  G ++N+ K+F     R+ V++NT+I 
Sbjct: 258 NLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIV 317

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY Q  +   AL L++ M +  +Q    T+ ++  AC  L    +G Q H++  K +   
Sbjct: 318 GYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTI--Y 375

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++++  A+I+MYAKCG +  A  VF  +   +   +W++MISGY+  G +  A + F 
Sbjct: 376 DKDVVVGNALIDMYAKCGSIKNARLVFDMLS-ERDEISWNAMISGYSMHGLVGEALKAFQ 434

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M + + V                               P+++T V++L AC   G LD 
Sbjct: 435 MMQETECV-------------------------------PNKLTFVSILSACSNAGLLDI 463

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+   +  +++      +   T ++ +  + G +D A+ +  +IP     V ++ +++  
Sbjct: 464 GQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLE-PNVKVWRALLGA 522

Query: 424 LAQHGLGETSIAVFREMELMGLKP 447
              H   +  + +    +++ + P
Sbjct: 523 CVIH--NDVDLGIMSAQQILQIDP 544



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 218/452 (48%), Gaps = 39/452 (8%)

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           TL++GY +S    E + L++ +  +G    N F F  +L     +   +    +H  I K
Sbjct: 11  TLIQGYVQSFQLDEVVDLFSRVHREGH-ELNPFVFTTILKLLVSVECAELAYSLHACIYK 69

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
            G E + F+  ALI  Y++ G +N+A + F+    +D+VS+  ++  YA+      +L L
Sbjct: 70  LGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQL 129

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +M+     P+ FTF  +  AC  L    +GK  H  V K   C   ++ +   ++++Y
Sbjct: 130 FAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKT--CYEMDLYVGVGLLDLY 187

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            K G  N   RVF  M        WS MIS Y +  +   +R+                 
Sbjct: 188 TKFGDANDVLRVFEEMP-KHDVIPWSFMISRYAQSNQ---SRE----------------- 226

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
                      A+ELFG+M    + P++ T  +VL++C  +  L  GK++H   ++ V  
Sbjct: 227 -----------AVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGL 274

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             N+F++ A++D+YAKCG +D ++ +F ++P N   V+ +N++I G  Q G G+ +++++
Sbjct: 275 DGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVT-WNTMIVGYVQSGDGDKALSLY 332

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497
           + M    ++   VT+ +VL AC+    +E G Q     L       +     ++D+ A+ 
Sbjct: 333 KNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKC 392

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           G +  A  L+  M  + + + W A+++   +H
Sbjct: 393 GSIKNAR-LVFDMLSERDEISWNAMISGYSMH 423



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 38/353 (10%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R+ VS+ TLI GY Q  +    + LF ++     + + F F  +      +    +    
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA +YK LG   SN  + TA+I+ YA CG +N A + F  +   K   +W+ M++ Y   
Sbjct: 64  HACIYK-LG-HESNAFVGTALIDAYAVCGSVNSARQAFDAIA-CKDMVSWTGMVACYAEN 120

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
            +                               F  +L+LF +M  +G +P+  T   VL
Sbjct: 121 DR-------------------------------FQDSLQLFAEMRMVGFNPNHFTFAGVL 149

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC+GL A   GK +H   ++   +  ++++   ++D+Y K G  +  L VF ++PK+  
Sbjct: 150 KACIGLEAFSVGKSVHGCVLKT-CYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKH-- 206

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  ++ +IS  AQ      ++ +F +M    + P+  TF +VL +C+    ++ GKQ  
Sbjct: 207 DVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVH 266

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             +L  G+   +     ++D+ A+ GRLD +  L   +P + N V W  ++  
Sbjct: 267 CHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTMIVG 318



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 3/207 (1%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  R+ VS+  +I GY Q     + ++LF ++   G   +      +L+  V +   +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             LH   I  +    N F+ TA+ID YA CGS+++A   F  I    K +  +  +++  
Sbjct: 61  YSLH-ACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIA--CKDMVSWTGMVACY 117

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A++   + S+ +F EM ++G  P+  TF  VL AC        GK     +L    +  +
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMP 511
                ++DL  + G  ++   + + MP
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMP 204


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/631 (39%), Positives = 383/631 (60%), Gaps = 40/631 (6%)

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYN 179
           ++S +   Q+H  +++ G   D ++  AL+  Y+   F   + A KVF      ++  +N
Sbjct: 43  ITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I G  +  +   A++ + +M     +P+ FT+  +F AC+     + G+Q H  V K+
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 240 LGCVGSNMLLKTAVINMYA------------------------------KCGLMNMAERV 269
              +GS++ +K+A I+MYA                              KCG++  A+ +
Sbjct: 162 --GIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F+ M + K+  +W+ MI+G  + G +  AR+LFD+M +RD +SW++M+ GY   G + +A
Sbjct: 220 FAQMPV-KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           LE+F +M+     P    + +VL AC  +GA+D G+ +H  Y++      +  L TA++D
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA-YLKRNSIKLDAVLGTALLD 337

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MYAKCG +D    VF ++ +  + +  +N++I GLA HG  E ++ +F +++   +KP+G
Sbjct: 338 MYAKCGRLDMGWEVFEEMKE--REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
           +T V VL AC+H G V++G + F++M   YG+ P++EHYGCMVDLL R G   EA  LI 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
           SMP   N+ +W ALL ACR+H N  + E  G+ LL+LEP +   YVLLSN+ A+  R+++
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
             ++RKLM D GI+  PG S ++ NGT+H F     SHPQ KEI   LK +  +L+ AG+
Sbjct: 516 VSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
            P+T QV+FD+DEEEKET V+YHSEKLA+AFGLIN+   + I I KNLR+C DCH A KL
Sbjct: 576 SPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKL 635

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S+I+ REI+VRD +R+H FK G CSC DFW
Sbjct: 636 ISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 135/284 (47%), Gaps = 5/284 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   +   W++++ GY  +   +EAL ++  M  +    P  F    VL +C+
Sbjct: 247 ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM-QREETRPGRFILSSVLAACS 305

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + +   G  +H ++ +  ++ D  +  AL+  Y+  G ++   +VFE    R++ ++N 
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A       AL LF K+Q+  ++P+  T V + +AC        G +    + +  
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ER 297
           G V   +     ++++  + GL + AE + ++M M  + A W +++      G     ER
Sbjct: 426 G-VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAER 484

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             ++  +++ ++   +  + + Y++VG F    ++   M+  GI
Sbjct: 485 VGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 283/806 (35%), Positives = 438/806 (54%), Gaps = 101/806 (12%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-------------NHHISSSQLISFF 49
           RL LE+ ++L  LESC   K   +  G+++H  L             N  +   +L+  +
Sbjct: 6   RLSLEYCTVL--LESCIQSKSLFR--GKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLY 61

Query: 50  ALSGCKNGLFRSRILFSQIDN--PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP 107
               C   L  +R +F ++ +   N+ +WN L+R Y+ +   +EA+ LY  ML  GI +P
Sbjct: 62  I--ACSE-LKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI-TP 117

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N FTFPFVL +C+ L     G +IHC I +  LE ++++  AL+ FY+  G +++A +VF
Sbjct: 118 NRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVF 177

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALW-LFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           +    RD+V++N++I+G++  +     +  L  +MQ+  + P++ T V +  A  ++N  
Sbjct: 178 DKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSL 236

Query: 227 RIGKQFHAV------------------VYKNLGCVG------------SNMLLKTAVINM 256
           R GK+ H                    VY    C+              N +  +A++  
Sbjct: 237 RHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296

Query: 257 YAKCGLMNMAERVFSTMGMSKSTA------------------------------------ 280
           Y  C  M  A  +F  + M K                                       
Sbjct: 297 YVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGF 356

Query: 281 -----AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
                  ++++S Y + G I  A + F++MD RD VS+TA+ISGY Q G   + L +F +
Sbjct: 357 VLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLE 416

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M+  GI+P++ T+ +VL AC  L  L +G   H  Y     F  +  +  A+IDMYAKCG
Sbjct: 417 MQLSGINPEKATLASVLPACAHLAGLHYGSCSHC-YAIICGFTADTMICNALIDMYAKCG 475

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            IDTA  VF ++ K  + +  +N++I     HG+G  ++ +F  M+  GLKPD VTF+ +
Sbjct: 476 KIDTARKVFDRMHK--RGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICL 533

Query: 456 LCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           + ACSH GLV EGK +F +M  ++GI P+MEHY CMVDLL+R G   E +  I+ MP + 
Sbjct: 534 ISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEP 593

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           +  +W ALL+ACR+++N ++GE   +K+  L P+   ++VLLSNM +   RW++A QVR 
Sbjct: 594 DVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRF 653

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASK-KSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
              + G +K PG S+IE +G +H FL    +SHPQ  +I   L ++ +++K  GY   + 
Sbjct: 654 TQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESS 713

Query: 634 QVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIY 693
            V  DV+EEEKE V+ YHSEKLA+AFG+++    + I +TKNLR+CGDCH A K +S + 
Sbjct: 714 YVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVT 773

Query: 694 RREIMVRDAIRFHLFKKGNCSCMDFW 719
           +R+I VRDA RFH FK G C+C DFW
Sbjct: 774 KRDITVRDASRFHHFKDGICNCGDFW 799


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/699 (37%), Positives = 403/699 (57%), Gaps = 45/699 (6%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  +R +F +I  P+   W T++ GY+     + A+  +  M+S GI SP  FTF  VL 
Sbjct: 95  LDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGI-SPTQFTFTNVLA 153

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           SCA   +   G ++H  ++K G    + + N+L++ Y+  G    A  VF+    +D  +
Sbjct: 154 SCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTST 213

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQD--------------------------------SC 205
           +NT+I+ + Q  +   AL LF +M D                                S 
Sbjct: 214 WNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSS 273

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
           ++PD FT  ++ SAC      ++GKQ HA +V  ++   G+   +  A+I+MYAK G + 
Sbjct: 274 LKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGA---VGNALISMYAKSGAVE 330

Query: 265 MAERVFSTMGM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
           +A R+    G  S +  A++S++ GY + G I+ AR +FD +  RD+V+WTAMI GY+Q 
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI--ENVVFGRNI 381
           G  S AL LF  M   G  P+  T+ AVL     L +LD GK+LH   I  E V    ++
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV---SSV 447

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            +  A+I MY++ GSI  A  +F  I     T++ + S+I  LAQHGLG  +I +F +M 
Sbjct: 448 SVGNALITMYSRSGSIKDARKIFNHICSYRDTLT-WTSMILSLAQHGLGNEAIELFEKML 506

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
            + LKPD +T+V VL AC+H GLVE+GK +F  M N + I+P   HY CM+DLL R G L
Sbjct: 507 RINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLL 566

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
           +EAY  I++MP + + V W +LL++CR+H+   + ++A +KLL ++P++   Y+ L+N L
Sbjct: 567 EEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTL 626

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           +   +WE+A +VRK M D  ++K  G+S+++    +H F      HPQ   I  M+  + 
Sbjct: 627 SACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIW 686

Query: 621 MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
            ++K  G++P+T  V+ D+++E KE ++ +HSEKLA+AF LIN+    T+RI KNLR+C 
Sbjct: 687 KEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCN 746

Query: 681 DCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           DCH A + +S +  REI+VRDA RFH FK G+CSC D+W
Sbjct: 747 DCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 240/526 (45%), Gaps = 82/526 (15%)

Query: 106 SPNNFTFPFVLNSCARL--SSFKS-----GCQIHCHIIKFGLEF-DLFIRNALIHFYSIF 157
           +PN    P   ++C  L  S+ KS     G  IH  IIK GL +  +F+ N L++ Y   
Sbjct: 5   TPNP---PSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKT 61

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYA-------------QVKEPCPALWL------- 197
           G  ++AH++F+    +   S+NT+++ +A             ++ +P    W        
Sbjct: 62  GSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYN 121

Query: 198 -----------FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                      F +M  S I P  FTF  + ++C       +GK+ H+ V K LG  G  
Sbjct: 122 HLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVK-LGQSGV- 179

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  +++NMYAKCG   MA+ VF  M + K T+ W++MIS + +  + + A  LFDQM 
Sbjct: 180 VPVANSLLNMYAKCGDSVMAKVVFDRMRL-KDTSTWNTMISMHMQFCQFDLALALFDQMT 238

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             D+VSW ++I+GY   G   +ALE F  M +S  + PD+ T+ +VL AC    +L  GK
Sbjct: 239 DPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGK 298

Query: 366 RLHQQYIENVV-------------FGR-------------------NIFLTTAVIDMYAK 393
           ++H   +   V             + +                   N+   T+++D Y K
Sbjct: 299 QIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFK 358

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
            G ID A ++F  +    + V  + ++I G AQ+GL   ++ +FR M   G KP+  T  
Sbjct: 359 IGDIDPARAIFDSLKH--RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
            VL   S    ++ GKQ     +       +     ++ + +R G + +A  +   +   
Sbjct: 417 AVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSY 476

Query: 514 ANSVIWRALLAACRLH--RNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
            +++ W +++ +   H   N  I        ++L+PDH  +  +LS
Sbjct: 477 RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLS 522


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/643 (40%), Positives = 393/643 (61%), Gaps = 29/643 (4%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS----SFKSGCQIHCHIIKFGLEFDLF 145
           ++A+  Y  ML++G   P+ +TFP +L + AR +    S      +H H+++ G+  +  
Sbjct: 1   EDAVAGYARMLARG-GRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAH 59

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY---AQVKEPCPALWLFRKMQ 202
           + ++L+  Y+  G    A  +         V++N LI+G+    +  E C +   F  M 
Sbjct: 60  VASSLVAAYTAGGDGAAARALV--GECDTPVAWNALISGHNRGGRFGESCGS---FVDMA 114

Query: 203 DSCIQPDAFTFVAMFSACTE-LNDPRIGKQFHAVVYKNLGCVGSNML----LKTAVINMY 257
            +   P   T+V++ SAC +   D  +G Q H  V      VGS +L    ++ A+++MY
Sbjct: 115 RAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRV------VGSGVLPDLRVENALVDMY 168

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
           A+C  M  A +VF  M + +S  +W+S++SG  R G+++ AR LFD+M +RD VSWTAMI
Sbjct: 169 AECADMGSAWKVFDGMQV-RSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMI 227

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            GY     F +ALE+F +M+   +  DE TMV+V+ AC  LGAL+ G+ + + Y+     
Sbjct: 228 DGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWV-RVYMSRQGI 286

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F+  A+IDMY+KCGSI+ AL VF  +    K    + +II GLA +G  E +I +F
Sbjct: 287 KMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT--WTAIILGLAVNGYEEEAIEMF 344

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M  +   PD VTF+ VL AC+H GLV++G++FF SM+  Y I P + HYGC++DLL R
Sbjct: 345 HRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGR 404

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G++ EA   I  MP   NS IW  LLAACR+H N++IGE+  ++LL+L+P++   Y+LL
Sbjct: 405 AGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILL 464

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A+  RWE+ R++R  + + GI+K PG S IE +G +H F+A  +SHP +KEI   L
Sbjct: 465 SNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKL 524

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
           + +   L + GY P+  +V  +V E+EK+ V+ +HSEKLA+AF L++S+    IRI KNL
Sbjct: 525 ESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNL 584

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+C DCH A KL+S +Y RE++VRD  RFH F+ G CSC D+W
Sbjct: 585 RMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 145/330 (43%), Gaps = 31/330 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-----------------------SSSQL 45
           S L A  +  + +   +Q+HG++V SG+   +                          Q+
Sbjct: 127 SVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQV 186

Query: 46  ISFFALSGCKNGLFR------SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
            S  + +   +GL R      +R LF ++   +   W  ++ GY  +   +EAL ++  M
Sbjct: 187 RSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREM 246

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
                VS + FT   V+ +CA+L + + G  +  ++ + G++ D F+ NALI  YS  G 
Sbjct: 247 QYSN-VSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGS 305

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I  A  VF+G   RD  ++  +I G A       A+ +F +M      PD  TF+ + +A
Sbjct: 306 IERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTA 365

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT       G++F   + +    +  N++    +I++  + G +  A      M M+ ++
Sbjct: 366 CTHAGLVDKGREFFLSMIEAYN-IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNS 424

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRD 309
             W ++++     G  E    + +++ + D
Sbjct: 425 TIWGTLLAACRVHGNSEIGELVAERLLELD 454


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/764 (34%), Positives = 432/764 (56%), Gaps = 79/764 (10%)

Query: 26  QIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           Q+H Q +  G    +S  +S + ++   S  K+G    R +F ++   N+  W TL+ GY
Sbjct: 114 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDG----RKVFDEMKERNVVTWTTLISGY 169

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           +R+    E L L+  M ++G   PN+FTF   L   A       G Q+H  ++K GL+  
Sbjct: 170 ARNSMNDEVLTLFMRMQNEG-TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 228

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
           + + N+LI+ Y   G +  A  +F+ +  + +V++N++I+GYA       AL +F  M+ 
Sbjct: 229 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 288

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV--------------------------- 236
           + ++    +F ++   C  L + R  +Q H  V                           
Sbjct: 289 NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLD 348

Query: 237 ----YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM------------------- 273
               +K +GCVG N++  TA+I+ + +      A  +FS M                   
Sbjct: 349 ALRLFKEIGCVG-NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407

Query: 274 ---------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
                             +S+   ++++  Y + GK+E A ++F  +D +D+V+W+AM++
Sbjct: 408 PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVVF 377
           GY+Q G    A+++FG++   GI P+E T  ++L  C    A +  GK+ H   I++ + 
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL- 526

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++ +++A++ MYAK G+I++A  VF +  +  K +  +NS+ISG AQHG    ++ VF
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKR--QREKDLVSWNSMISGYAQHGQAMKALDVF 584

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLAR 496
           +EM+   +K DGVTF+ V  AC+H GLVEEG+++F+ M+ +  I P  EH  CMVDL +R
Sbjct: 585 KEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSR 644

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+L++A  +I++MP  A S IWR +LAACR+H+  ++G +A +K++ ++P+  A YVLL
Sbjct: 645 AGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLL 704

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SNM AE+  W+E  +VRKLM++  ++K PG+S+IE     + FLA  +SHP   +I + L
Sbjct: 705 SNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKL 764

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
           +D++ +LK  GY P+T  V+ D+D+E KE V++ HSE+LA+AFGLI +     + I KNL
Sbjct: 765 EDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNL 824

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK-GNCSCMDFW 719
           R+CGDCHL  KL+++I  REI+VRD+ RFH F   G CSC DFW
Sbjct: 825 RVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 217/469 (46%), Gaps = 44/469 (9%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L+ +  LF +    +   + +L+ G+SR    QEA  L+ ++   G+   +   F  VL 
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGM-EMDCSIFSSVLK 101

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
             A L     G Q+HC  IKFG   D+ +  +L+  Y       +  KVF+    R++V+
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           + TLI+GYA+       L LF +MQ+   QP++FTF A      E      G Q H VV 
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           KN   +   + +  ++IN+Y KCG +  A  +F    + KS   W+SMISGY   G    
Sbjct: 222 KN--GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV-KSVVTWNSMISGYAANG---- 274

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
                      DL                 +AL +F  M    +   E +  +V++ C  
Sbjct: 275 ----------LDL-----------------EALGMFYSMRLNYVRLSESSFASVIKLCAN 307

Query: 358 LGALDFGKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
           L  L F ++LH   ++   +F +NI   TA++  Y+KC ++  AL +F +I      VS 
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVS- 364

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           + ++ISG  Q+   E ++ +F EM+  G++P+  T+  +L A       E   Q  ++  
Sbjct: 365 WTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT-- 422

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           NY     +     ++D   + G+++EA  +   +  D + V W A+LA 
Sbjct: 423 NYERSSTVGT--ALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAG 468



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           G     ++  A  LFD+   RD  S+ +++ G+S+ G   +A  LF  +  LG+  D   
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
             +VL+    L    FG++LH Q I+   F  ++ + T+++D Y K  +      VF ++
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIK-FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEM 154

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
            +  + V  + ++ISG A++ + +  + +F  M+  G +P+  TF   L   +  G+   
Sbjct: 155 KE--RNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR 212

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G Q    ++  G+   +     +++L  + G + +A  L       +  V W ++++ 
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISG 269



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 28/162 (17%)

Query: 20  SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           S+ Q  Q HG  + S L+  +  SS L++ +A  G    +  +  +F +    ++  WN+
Sbjct: 510 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG---NIESAEEVFKRQREKDLVSWNS 566

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ GY++     +AL ++  M  K  V  +  TF  V  +C            H  +++ 
Sbjct: 567 MISGYAQHGQAMKALDVFKEM-KKRKVKMDGVTFIGVFAACT-----------HAGLVEE 614

Query: 139 GLE-FDLFIRN-----------ALIHFYSIFGYINNAHKVFE 168
           G + FD+ +R+            ++  YS  G +  A KV E
Sbjct: 615 GEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIE 656


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 416/718 (57%), Gaps = 46/718 (6%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           L +  +L+++ S   L+   QIHG +V  G +  +S ++  I+ +  +G  N    +R +
Sbjct: 298 LTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVN---YARRM 354

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS- 123
           F Q+   ++  WNT++ G +RS   + +L L+  +L  G++ P+ FT   VL +C+ L  
Sbjct: 355 FGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL-PDQFTITSVLRACSSLEE 413

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           S+  G Q+H   +K G+  D F+  ALI  YS  G +  A  +F      DL S+N +++
Sbjct: 414 SYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMH 473

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+        AL LF  M +   + D  TF     A   L   + GKQ HAVV K     
Sbjct: 474 GFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMR--F 531

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ + + +++MY KCG M                                + AR++F+
Sbjct: 532 HYDLFVISGILDMYLKCGEM--------------------------------KSARKVFN 559

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           Q+   D V+WT +ISG  + G   QAL  + +M   G+ PDE T   +++AC  L AL+ 
Sbjct: 560 QIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQ 619

Query: 364 GKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           GK++H   ++ N  F  + F+ T+++DMYAKCG+I+ A  +F ++  N ++V+L+N++I 
Sbjct: 620 GKQIHANIMKLNCAF--DPFVMTSLVDMYAKCGNIEDAYGLFRRM--NTRSVALWNAMIV 675

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIK 481
           GLAQHG  E ++  F EM+  G+ PD VTF+ VL ACSH GL  +  + F+SM   YG++
Sbjct: 676 GLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVE 735

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P++EHY C+VD L+R G + EA  ++ SMP++A++ ++R LL ACR+  + + GE   +K
Sbjct: 736 PEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEK 795

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L  ++P   A YVLLSN+ A   +WE A   R +M    ++K PG+S+I+    +H F+A
Sbjct: 796 LFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVA 855

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             +SH +T  I   ++ +  ++K  GYVP+T   + D++EE+KE+ +SYHSEKLA+A+GL
Sbjct: 856 GDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGL 915

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + +    T+R+ KNLR+CGDCH A K +S +++REI++RDA RFH F+ G CSC D+W
Sbjct: 916 MKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 187/352 (53%), Gaps = 19/352 (5%)

Query: 4   LVLEHSSLLALLESCKSLKQAL----QIHGQIVHSG--LNHHISSSQLISFFALSGCKNG 57
           L+ +  ++ ++L +C SL+++     Q+H   + +G  L+  +S++ LI  ++  G    
Sbjct: 394 LLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTA-LIDVYSKGG---K 449

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           +  + +LF   D  ++  WN +M G++ SD+ +EAL L++ M  +G    +  TF     
Sbjct: 450 MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERG-EKADQITFANAAK 508

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +   L   + G QIH  +IK    +DLF+ + ++  Y   G + +A KVF    + D V+
Sbjct: 509 AAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVA 568

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           + T+I+G  +  E   AL+ + +M+ + +QPD +TF  +  AC+ L     GKQ HA + 
Sbjct: 569 WTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIM 628

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K L C     ++ T++++MYAKCG +  A  +F  M  ++S A W++MI G  + G  E 
Sbjct: 629 K-LNCAFDPFVM-TSLVDMYAKCGNIEDAYGLFRRMN-TRSVALWNAMIVGLAQHGNAEE 685

Query: 298 ARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPD 344
           A   F++M  R    D V++  ++S  S  G  S A + F  M+ + G+ P+
Sbjct: 686 ALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPE 737



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/551 (21%), Positives = 249/551 (45%), Gaps = 58/551 (10%)

Query: 26  QIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILF--SQIDNPNIFIWNTLMRG 82
           + H  IV SGLN     ++ LI+ +A  G    LF +R LF  +   + ++  +N ++  
Sbjct: 34  RTHAVIVTSGLNPDRYVTNNLITMYAKCG---SLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 83  YSRS------DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           Y+ +      +   EA  ++  +L + ++     T   +   C    S  +   +  + +
Sbjct: 91  YAHTGELHDVEKTHEAFHIF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAV 149

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K GL++D+F+  AL++ Y+ F  I  A  +F+    RD+V +N ++  Y ++      L 
Sbjct: 150 KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLG 209

Query: 197 LFRKMQDSCIQPDAFT-----------------------FVAMFSACTELNDPRI----- 228
           LF     S ++PD  +                       +      C + +D  +     
Sbjct: 210 LFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTL 269

Query: 229 ------GKQFHAV-VYKNL--GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMS 276
                 G+ + AV  ++++    V  + L    ++++ A    + + +++   +   G  
Sbjct: 270 SSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWD 329

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           +  +  +S I+ Y + G +  AR++F QM + DL+SW  +ISG ++ G    +L LF  +
Sbjct: 330 QFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDL 389

Query: 337 ESLGIHPDEVTMVAVLRACVGL-GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
              G+ PD+ T+ +VLRAC  L  +   G+++H   ++  +   + F++TA+ID+Y+K G
Sbjct: 390 LRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIV-LDSFVSTALIDVYSKGG 448

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            ++ A  +F+   ++   ++ +N+++ G         ++ +F  M   G K D +TF   
Sbjct: 449 KMEEAELLFHN--QDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANA 506

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
             A      +++GKQ    ++       +     ++D+  + G +  A  +   +P   +
Sbjct: 507 AKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPD 565

Query: 516 SVIWRALLAAC 526
            V W  +++ C
Sbjct: 566 DVAWTTVISGC 576



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++LR  +    L  GKR H   + + +   + ++T  +I MYAKCGS+ +A  +F   P+
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGL-NPDRYVTNNLITMYAKCGSLFSARKLFDITPQ 76

Query: 410 NLKTVSLFNSIISGLAQ----HGLGETSIA--VFREMELMGLKPDGVTFVTVLCACSHGG 463
           + + +  +N+I++  A     H + +T  A  +FR +    +     T   +   C    
Sbjct: 77  SDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLC---- 132

Query: 464 LVEEGKQFFESMLNYGIKPQMEH----YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           L+       E++  Y +K  ++      G +V++ A+  R+ EA  L   MP   + V+W
Sbjct: 133 LLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPV-RDVVLW 191

Query: 520 RALLAA 525
             ++ A
Sbjct: 192 NVMMKA 197


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/720 (36%), Positives = 417/720 (57%), Gaps = 50/720 (6%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHS-----GLN-HHISSSQLISFFALSGCKNGLFR 60
           ++ +L  ++ +C+ LK  LQ+ G+++H      GL+  H   + L+  +    C+  +  
Sbjct: 29  DNYTLPFVIRACRDLKN-LQM-GRLIHHIVYKFGLDLDHFVCAALVDMYV--KCRE-IED 83

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   ++  W  ++ GY+      E+LVL+  M  +G+V P+      V+ +CA
Sbjct: 84  ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV-PDKVAMVTVVFACA 142

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L +      I  +I +   + D+ +  A+I  Y+  G + +A ++F+    ++++S++ 
Sbjct: 143 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 202

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I  Y    +   AL LFR M  S + PD  T  ++  AC++L + ++G+  H +VYK  
Sbjct: 203 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYK-F 261

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G +  +  +  A+++MY KC                              RE  IE AR 
Sbjct: 262 G-LDLDHFVCAALVDMYGKC------------------------------RE--IEDARF 288

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LFD+M +RDLV+WT MI GY++ G  +++L LF KM   G+ PD+V MV V+ AC  LGA
Sbjct: 289 LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 348

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +   + +   YI+   F  ++ L TA+IDM+AKCG +++A  +F ++ +  K V  ++++
Sbjct: 349 MHKARTI-DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE--KNVISWSAM 405

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYG 479
           I+    HG G  ++ +F  M   G+ P+ +T V++L ACSH GLVEEG +FF  M  +Y 
Sbjct: 406 IAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYS 465

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           ++  ++HY C+VDLL R GRLDEA  LI+SM  + +  +W A L ACR H++  + E A 
Sbjct: 466 VRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAA 525

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
             LL+L+P +  HY+LLSN+ A   RWE+  + R LM    ++K PGW++IE +   H+F
Sbjct: 526 TSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQF 585

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
                +HP++KEI  MLK +  KL+  GYVP+T  V+ DVDEE K  ++  HSEKLA+AF
Sbjct: 586 SVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAF 645

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI +     IRI KNLR+CGDCH   KL+S I  R I+VRDA RFH FK+G CSC D+W
Sbjct: 646 GLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 171/347 (49%), Gaps = 42/347 (12%)

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           ++ G+A+V +       FR++     +PD +T   +  AC +L + ++G+  H +VYK  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK-F 59

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G +  +  +  A+++MY KC  +  A  +F  M   +    W+ MI GY   GK      
Sbjct: 60  G-LDLDHFVCAALVDMYVKCREIEDARFLFDKM-QERDLVTWTVMIGGYAECGKA----- 112

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                     +++L LF KM   G+ PD+V MV V+ AC  LGA
Sbjct: 113 --------------------------NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 146

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +    R+   YI+   F  ++ L TA+IDMYAKCG +++A  +F ++ +  K V  ++++
Sbjct: 147 M-HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE--KNVISWSAM 203

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           I+    HG G  ++ +FR M   G+ PD +T  ++L ACS    ++ G+     +  +G+
Sbjct: 204 IAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGL 263

Query: 481 KPQMEHYGC--MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              ++H+ C  +VD+  +   +++A  L   MP + + V W  ++  
Sbjct: 264 --DLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           M+ G+++VG +      F ++   G  PD  T+  V+RAC  L  L  G+ +H    +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK-- 58

Query: 376 VFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
            FG ++  F+  A++DMY KC  I+ A  +F K+ +  + +  +  +I G A+ G    S
Sbjct: 59  -FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQE--RDLVTWTVMIGGYAECGKANES 115

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           + +F +M   G+ PD V  VTV+ AC+  G + + +   + +     +  +     M+D+
Sbjct: 116 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 175

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            A+ G ++ A  +   M  + N + W A++AA   H         G+K LDL
Sbjct: 176 YAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDL 219


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/790 (35%), Positives = 440/790 (55%), Gaps = 90/790 (11%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCK-NGLFRSR 62
           V  H S + LLE C SLK+  QI   I+ +G  N H+  ++LIS F    CK N +  + 
Sbjct: 42  VYRHPSAI-LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLF----CKFNSITEAA 96

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F  +++    +++T+++GY+++ + ++A+  Y  M    ++ P  + F ++L      
Sbjct: 97  RVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM-PVVYDFTYLLQLSGEN 155

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              + G +IH  +I  G + +LF   A+++ Y+    I +A+K+FE    RDLVS+NT++
Sbjct: 156 LDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVV 215

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GYAQ      A+ +  +MQ++  +PD+ T V++  A  +L   RIG+  H   ++    
Sbjct: 216 AGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFR---- 271

Query: 243 VGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK------ 294
            G   ++   TA+++ Y KCG +  A  VF  M  S++  +W++MI GY + G+      
Sbjct: 272 AGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS-SRNVVSWNTMIDGYAQNGESEEAFA 330

Query: 295 -----------------------------IERARQLFDQMDQR----DLVSWTAMISGYS 321
                                        +ER R +   +D++    D+    ++IS YS
Sbjct: 331 TFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYS 390

Query: 322 Q-------------------------VGGFSQ------ALELFGKMESLGIHPDEVTMVA 350
           +                         + G++Q      AL LF +M+S  I PD  T+V+
Sbjct: 391 KCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVS 450

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           V+ A   L      K +H   I  ++  +N+F+ TA+ID +AKCG+I TA  +F  + + 
Sbjct: 451 VITALADLSVTRQAKWIHGLAIRTLM-DKNVFVCTALIDTHAKCGAIQTARKLFDLMQE- 508

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + V  +N++I G   +G G  ++ +F EM+   +KP+ +TF++V+ ACSH GLVEEG  
Sbjct: 509 -RHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMY 567

Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +FESM  NYG++P M+HYG MVDLL R GRLD+A+  IQ MP      +  A+L ACR+H
Sbjct: 568 YFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIH 627

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           +N ++GE    +L DL+PD G ++VLL+NM A    W++  +VR  M+  GIQK PG S 
Sbjct: 628 KNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSL 687

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           +E    +H F +   +HPQ+K I   L+ +  ++K+AGYVP+T   + DV+E+ KE ++S
Sbjct: 688 VELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDT-NSIHDVEEDVKEQLLS 746

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSE+LA+AFGL+N+R    I I KNLR+CGDCH A K +S +  REI+VRD  RFH FK
Sbjct: 747 SHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFK 806

Query: 710 KGNCSCMDFW 719
            G CSC D+W
Sbjct: 807 NGICSCGDYW 816


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/608 (41%), Positives = 378/608 (62%), Gaps = 12/608 (1%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +L  C+ +   +   QIH  ++K GL  D    + L+ F +    G +  A  VF+    
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            +   +NT+I GY+  KEP  AL L+  M    +  +A+TF  +  AC+ ++     +Q 
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + K +G  GS +    +++N+Y+K G +  A  +F  +   + T +W+SMI GYT+ 
Sbjct: 141 HAHIIK-MG-FGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD-QRDTVSWNSMIDGYTKC 197

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G+IE A ++F+ M +R+++SWT+MISG    G   +AL LF +M++ GI  D V +V+ L
Sbjct: 198 GEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTL 257

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC  LG LD GK +H  YI+      +  L   +IDMYAKCG ++ A+ VF K+ +  K
Sbjct: 258 QACADLGVLDQGKWIHA-YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEE--K 314

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            VS++ ++ISG A HG G  ++  F +M+  G++P+ +TF  +L ACSH GLV E K  F
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           ESM   +G KP +EHYGCMVDLL R G L EA  LI++MP   N+ IW ALL AC +H N
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++G+  G+ L+ ++P HG  Y+ L+++ A    W +A +VR+ M + G+ K PG S I 
Sbjct: 435 LELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 494

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            NGT H FLA  +SHPQ KEI+ ML+ +  +L+  GY P    ++ D++++EKET + +H
Sbjct: 495 VNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHH 554

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+ FGLI+++   TIRI KNLR+C DCH   KL+S++Y REI++RD  RFHLFK G
Sbjct: 555 SEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDG 614

Query: 712 NCSCMDFW 719
           NC+C D+W
Sbjct: 615 NCTCGDYW 622



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 219/456 (48%), Gaps = 83/456 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L LL+ C ++++  QIHGQ++ +GL    I +S+L++F A S     L  +R +F +I  
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA-SPNSGSLAYARTVFDRIFR 80

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN F+WNT++RGYS S  P+EAL+LY  ML    V  N +TFPF+L +C+ +S+ +   Q
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHS-VPHNAYTFPFLLKACSSMSASEETQQ 139

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH HIIK G   +++  N+L++ YS  G I +A  +F+    RD VS+N++I+GY +  E
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199

Query: 191 -------------------------------PCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                                          P  AL LF +MQ + I+ D    V+   A
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259

Query: 220 CTELNDPRIGKQFHAVVYKN-------LGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           C +L     GK  HA + K+       LGCV         +I+MYAKCG +  A  VF  
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCV---------LIDMYAKCGDLEEAIEVFRK 310

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M   K  + W++MISGY   G   R R                            +ALE 
Sbjct: 311 M-EEKGVSVWTAMISGYAIHG---RGR----------------------------EALEW 338

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F KM++ G+ P+++T   +L AC   G +   K L +       F  +I     ++D+  
Sbjct: 339 FMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLG 398

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           + G +  A  +   +P      +++ ++++    HG
Sbjct: 399 RAGLLKEAEELIENMPVK-PNAAIWGALLNACHIHG 433


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/726 (36%), Positives = 418/726 (57%), Gaps = 52/726 (7%)

Query: 19  KSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNG----LFRSRILFSQIDNPN 72
           ++++QA ++H ++  SG  L H  S+  L++  +L  C       L  +  LF ++  P+
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLN--SLVNCLEPHPLHLRYALHLFDRMP-PS 66

Query: 73  IFIWNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLN---SCARLSSFKSG 128
            F+++T +R  SR+ S P    +L+  M   G V P+ FTF F+     S +R  S    
Sbjct: 67  TFLFDTALRACSRAGSDPHRPFLLFRRMRRAG-VRPDGFTFHFLFKCSSSSSRPHSLLLC 125

Query: 129 CQIHCHIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFE------------------- 168
             +H   ++  L     F+ N+LIH Y   G   +A + F+                   
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAK 185

Query: 169 ------------GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
                        +  RD++S+ +LI  Y++      A+  F+ M    I PD  T +A+
Sbjct: 186 MGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAV 245

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC +L D  +G+  H +V +       N+++  A+I+MYAKCG    A++VF  +G  
Sbjct: 246 LSACAKLKDLELGRSLHLLVEEKGMPTSENLVV--ALIDMYAKCGDFGHAQQVFDALGRG 303

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
               +W+++I GY + G ++ AR LFD+M+ RD++++ +M++GY   G   +AL LF  M
Sbjct: 304 PRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSM 363

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
               +  D  T+V +L AC  LGAL  G+ LH   IE  +   +I+L TA++DMY KCG 
Sbjct: 364 RRHDLRVDNFTVVNLLTACASLGALQQGRALHA-CIEQRLVEADIYLGTALLDMYMKCGR 422

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +D A  VF ++ K  + V  + ++I+GLA +G+G+ ++  F +M   G +P+ V+++ VL
Sbjct: 423 VDEATIVFQRMGK--RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVL 480

Query: 457 CACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSH  L+ EG+ +F+ M + Y I PQ+EHYGCM+DLL R G LDEA  L+++MP   N
Sbjct: 481 TACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPN 540

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
           +VIW ++L+ACR+H++  + + A + LL LEPD    YV L N+  ++ +WE A ++R L
Sbjct: 541 AVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRML 600

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           M++  ++K  G+S I   G +H+F+ S KSHP+  EI  ML++++ +LKS GY P T Q+
Sbjct: 601 MEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQI 660

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
             DVDEEEKE  +  HSEKLA+AFGLIN      + I KNLR+C DCH A KL+S ++ R
Sbjct: 661 TVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNR 720

Query: 696 EIMVRD 701
           EI+VRD
Sbjct: 721 EIIVRD 726


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/631 (39%), Positives = 382/631 (60%), Gaps = 40/631 (6%)

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYN 179
           ++S +   Q+H  +++ G   D ++  AL+  Y+   F   + A KVF      ++  +N
Sbjct: 43  ITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I G  +  +   A++ + +M     +P+ FT+  +F AC+     + G+Q H  V K+
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 240 LGCVGSNMLLKTAVINMYA------------------------------KCGLMNMAERV 269
              +GS++ +K+A I MYA                              KCG++  A+ +
Sbjct: 162 --GIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F+ M + K+  +W+ MI+G  + G +  AR+LFD+M +RD +SW++M+ GY   G + +A
Sbjct: 220 FAQMPV-KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           LE+F +M+     P    + +VL AC  +GA+D G+ +H  Y++      +  L TA++D
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA-YLKRNSIKLDAVLGTALLD 337

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MYAKCG +D    VF ++ +  + +  +N++I GLA HG  E ++ +F +++   +KP+G
Sbjct: 338 MYAKCGRLDMGWEVFEEMKE--REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
           +T V VL AC+H G V++G + F++M   YG+ P++EHYGCMVDLL R G   EA  LI 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
           SMP   N+ +W ALL ACR+H N  + E  G+ LL+LEP +   YVLLSN+ A+  R+++
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
             ++RKLM + GI+  PG S ++ NGT+H F     SHPQ KEI   LK +  +L+ AG+
Sbjct: 516 VSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
            P+T QV+FD+DEEEKET V+YHSEKLA+AFGLIN+   + I I KNLR+C DCH A KL
Sbjct: 576 SPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKL 635

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S+I+ REI+VRD +R+H FK G CSC DFW
Sbjct: 636 ISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 136/284 (47%), Gaps = 5/284 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   +   W++++ GY  +   +EAL ++  M  +    P  F    VL +C+
Sbjct: 247 ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM-QREETRPGRFILSSVLAACS 305

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + +   G  +H ++ +  ++ D  +  AL+  Y+  G ++   +VFE    R++ ++N 
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A       AL LF K+Q+  ++P+  T V + +AC        G +    + +  
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ER 297
           G V   +     ++++  + GL + AE + ++M M  + A W +++      G     ER
Sbjct: 426 G-VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAER 484

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             ++  +++ ++   +  + + Y++VG F    ++   M++ GI
Sbjct: 485 VGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI 528


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/724 (36%), Positives = 410/724 (56%), Gaps = 50/724 (6%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           ++ + LI+  + +G  N L R     + +   +   +N ++ GYS ++    A+ L+  +
Sbjct: 82  VARTTLIAAHSSAGNSN-LAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL 140

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ-IHCHIIKFGLEFDLFIRNALIHFYS--- 155
           L  G   P+NFTF  VL + A +   +  CQ IHC ++K G  F   + NAL+  +    
Sbjct: 141 LRNGF-RPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 156 --------------------------------IFGYINN-----AHKVFEGSLARDLVSY 178
                                           I GY+ N     A +  +G   + +V++
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N +I+GY        AL +FRKM    IQ D FT+ ++ SAC        GKQ HA + +
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 239 N--LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
                 +  ++ +  A+  +Y KCG ++ A +VF+ M + K   +W++++SGY   G+I+
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPV-KDLVSWNAILSGYVNAGRID 378

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A+  F++M +R+L++WT MISG +Q G   ++L+LF +M+S G  P +      + AC 
Sbjct: 379 EAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            L AL  G++LH Q +  + F  ++    A+I MYAKCG ++ A  +F  +P  L +VS 
Sbjct: 439 WLAALMHGRQLHAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSVS- 495

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N++I+ L QHG G  ++ +F  M    + PD +TF+TVL  CSH GLVEEG ++F+SM 
Sbjct: 496 WNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMS 555

Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             YGI P  +HY  M+DLL R G+  EA  +I++MP +    IW ALLA CR+H N  +G
Sbjct: 556 GLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLG 615

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
             A ++L +L P H   YVLLSNM A   RW++  +VRKLM D G++K PG S+IE    
Sbjct: 616 IQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENK 675

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +H FL     HP+ + +   L+++ +K++  GY+P+T  V+ D++ E+KE V+S HSEKL
Sbjct: 676 VHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKL 735

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+ FGL+      T+R+ KNLRICGDCH AFK +S++  REI+VRD  RFH FK G CSC
Sbjct: 736 AVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSC 795

Query: 716 MDFW 719
            ++W
Sbjct: 796 GNYW 799



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 210/431 (48%), Gaps = 48/431 (11%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D+  R  LI  +S  G  N A ++F  +    RD V YN +I GY+   +   A+ LFR 
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 201 MQDSCIQPDAFTFVAMFSACTEL-NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +  +  +PD FTF ++  A   +  D +  +Q H  V K+     +++L   A+++++ K
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVL--NALLSVFVK 197

Query: 260 CGL---------MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           C           M  A ++F  M   +   +W++MI+GY R G+++ ARQ  D M ++ +
Sbjct: 198 CASSPLVSSSSLMAAARKLFDEM-TERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLV 256

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V+W AMISGY   G F +ALE+F KM  LGI  DE T  +VL AC   G    GK++H  
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 371 YIEN---VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL--------------- 411
            +          ++ +  A+  +Y KCG +D A  VF ++P K+L               
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 412 -------------KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
                        + +  +  +ISGLAQ+G GE S+ +F  M+  G +P    F   + A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           C+    +  G+Q    ++  G    +     ++ + A+ G ++ A+ L  +MPY  +SV 
Sbjct: 437 CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSVS 495

Query: 519 WRALLAACRLH 529
           W A++AA   H
Sbjct: 496 WNAMIAALGQH 506



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 122/510 (23%), Positives = 200/510 (39%), Gaps = 112/510 (21%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSG-------LNHHISSSQLISFFALSGCKNGLFRS 61
           S L AL    +  KQ  QIH  +V SG       LN  +S     +   L    + +  +
Sbjct: 154 SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAA 213

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN------------- 108
           R LF ++   +   W T++ GY R+     A      M  K +V+ N             
Sbjct: 214 RKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFL 273

Query: 109 -----------------NFTFPFVLNSCARLSSFKSGCQIHCHIIKF----GLEFDLFIR 147
                             FT+  VL++CA    F  G Q+H +I++      L+F L + 
Sbjct: 274 EALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVN 333

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK---------EPCP----- 193
           NAL   Y   G ++ A +VF     +DLVS+N +++GY             E  P     
Sbjct: 334 NALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLL 393

Query: 194 -----------------ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
                            +L LF +M+    +P  + F     AC  L     G+Q HA +
Sbjct: 394 TWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQL 453

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            + LG   S++    A+I MYAKCG++  A  +F TM    S  +W++MI+   + G   
Sbjct: 454 VR-LG-FDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSV-SWNAMIAALGQHGHGA 510

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
           +A +LF+ M + D++                               PD +T + VL  C 
Sbjct: 511 QALELFELMLKEDIL-------------------------------PDRITFLTVLSTCS 539

Query: 357 GLGALDFGKRLHQQY--IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
             G ++ G R  +    +  +  G + +    +ID+  + G    A  +   +P      
Sbjct: 540 HAGLVEEGHRYFKSMSGLYGICPGEDHY--ARMIDLLCRAGKFSEAKDMIETMPVE-PGP 596

Query: 415 SLFNSIISGLAQHGLGETSI-AVFREMELM 443
            ++ ++++G   HG  +  I A  R  ELM
Sbjct: 597 PIWEALLAGCRIHGNMDLGIQAAERLFELM 626



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 157/339 (46%), Gaps = 15/339 (4%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +++L  L   C  + +A Q+  Q+    L   +S + ++S +  +G    +  ++  F +
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPVKDL---VSWNAILSGYVNAG---RIDEAKSFFEE 386

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N+  W  ++ G +++   +E+L L+  M S+G   P ++ F   + +CA L++   
Sbjct: 387 MPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGF-EPCDYAFAGAIIACAWLAALMH 445

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H  +++ G +  L   NALI  Y+  G +  AH +F      D VS+N +I    Q
Sbjct: 446 GRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQ 505

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG-CVGSN 246
                 AL LF  M    I PD  TF+ + S C+       G ++   +    G C G +
Sbjct: 506 HGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGED 565

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK----IERARQLF 302
              +  +I++  + G  + A+ +  TM +      W ++++G    G     I+ A +LF
Sbjct: 566 HYAR--MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLF 623

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           + M Q D  ++  + + Y+ VG +    ++   M   G+
Sbjct: 624 ELMPQHD-GTYVLLSNMYATVGRWDDVAKVRKLMRDKGV 661



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 127/321 (39%), Gaps = 86/321 (26%)

Query: 285 MISGYTREGKIERARQLFDQMDQ---------------------------------RDLV 311
           +I  Y +   +  A  LFD++ Q                                 RD V
Sbjct: 56  LIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTV 115

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
            + AMI+GYS       A+ELF  +   G  PD  T  +VL A   L  +   ++  QQ 
Sbjct: 116 CYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGA---LALIVEDEKQCQQI 172

Query: 372 IENVVFGRNIFLTT---AVIDMYAKC---------------------------------- 394
              VV   + F+T+   A++ ++ KC                                  
Sbjct: 173 HCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMI 232

Query: 395 ------GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
                 G +D A      + + L  V  +N++ISG   HG    ++ +FR+M L+G++ D
Sbjct: 233 AGYVRNGELDAARQFLDGMTEKL--VVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWD 290

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA----RDGRLDEAY 504
             T+ +VL AC++ G    GKQ    +L    +P ++    + + LA    + G++DEA 
Sbjct: 291 EFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEAR 350

Query: 505 GLIQSMPYDANSVIWRALLAA 525
            +   MP   + V W A+L+ 
Sbjct: 351 QVFNQMPVK-DLVSWNAILSG 370


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/608 (41%), Positives = 378/608 (62%), Gaps = 12/608 (1%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +L  C+ +   +   QIH  ++K GL  D    + L+ F +    G +  A  VF+    
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            +   +NT+I GY+  KEP  AL L+  M    +  +A+TF  +  AC+ ++     +Q 
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + K +G  GS +    +++N+Y+K G +  A  +F  +   + T +W+SMI GYT+ 
Sbjct: 141 HAHIIK-MG-FGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD-QRDTVSWNSMIDGYTKC 197

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G+IE A ++F+ M +R+++SWT+MISG    G   +AL LF +M++ GI  D V +V+ L
Sbjct: 198 GEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTL 257

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC  LG LD GK +H  YI+      +  L   +IDMYAKCG ++ A+ VF K+ +  K
Sbjct: 258 QACADLGVLDQGKWIHA-YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEE--K 314

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            VS++ ++ISG A HG G  ++  F +M+  G++P+ +TF  +L ACSH GLV E K  F
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           ESM   +G KP +EHYGCMVDLL R G L EA  LI++MP   N+ IW ALL AC +H N
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++G+  G+ L+ ++P HG  Y+ L+++ A    W +A +VR+ M + G+ K PG S I 
Sbjct: 435 LELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 494

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            NGT H FLA  +SHPQ KEI+ ML+ +  +L+  GY P    ++ D++++EKET + +H
Sbjct: 495 VNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHH 554

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+ FGLI+++   TIRI KNLR+C DCH   KL+S++Y REI++RD  RFHLFK G
Sbjct: 555 SEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDG 614

Query: 712 NCSCMDFW 719
           NC+C D+W
Sbjct: 615 NCTCGDYW 622



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 219/456 (48%), Gaps = 83/456 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L LL+ C ++++  QIHGQ++ +GL    I +S+L++F A S     L  +R +F +I  
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA-SPNSGSLAYARTVFDRIFR 80

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN F+WNT++RGYS S  P+EAL+LY  ML    V  N +TFPF+L +C+ +S+ +   Q
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHS-VPHNAYTFPFLLKACSSMSALEETQQ 139

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH HIIK G   +++  N+L++ YS  G I +A  +F+    RD VS+N++I+GY +  E
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199

Query: 191 -------------------------------PCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                                          P  AL LF +MQ + I+ D    V+   A
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259

Query: 220 CTELNDPRIGKQFHAVVYKN-------LGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           C +L     GK  HA + K+       LGCV         +I+MYAKCG +  A  VF  
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCV---------LIDMYAKCGDLEEAIEVFRK 310

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M   K  + W++MISGY   G   R R                            +ALE 
Sbjct: 311 M-EEKGVSVWTAMISGYAIHG---RGR----------------------------EALEW 338

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F KM++ G+ P+++T   +L AC   G +   K L +       F  +I     ++D+  
Sbjct: 339 FMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLG 398

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           + G +  A  +   +P      +++ ++++    HG
Sbjct: 399 RAGLLKEAEELIENMPVK-PNAAIWGALLNACHIHG 433


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/631 (41%), Positives = 368/631 (58%), Gaps = 51/631 (8%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-------ARDLVSYNTLI 182
           Q H  I++ G   D +I  +L+  Y+      N +  FE SL         ++  +N +I
Sbjct: 52  QAHALILRTGHLQDSYIAGSLVKSYA--NVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 109

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
               +  EP  A+ L+ +M  +  +P+ +T+ A+  AC++      G Q HA + K+ G 
Sbjct: 110 KVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH-GL 168

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
            G   +L +A I MYA  G +  A R+    G       W++MI GY R G++E AR+LF
Sbjct: 169 GGDGHILSSA-IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELF 227

Query: 303 --------------------------------DQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                           D+M +RD +SW+AMI GY Q G F +AL
Sbjct: 228 EGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEAL 287

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
           E+F +M+   I P +  + +VL AC  LGALD G+ +H     N +    + L T+++DM
Sbjct: 288 EIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV-LGTSLVDM 346

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           YAKCG ID A  VF K+    K VS +N++I GLA HG  E +I +F +M++    P+ +
Sbjct: 347 YAKCGRIDLAWEVFEKMSN--KEVSSWNAMIGGLAMHGRAEDAIDLFSKMDI---NPNEI 401

Query: 451 TFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           TFV VL AC+HGGLV++G   F SM   YG++PQ+EHYGC+VDLL R G L EA  ++ S
Sbjct: 402 TFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSS 461

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
           +P +    +W ALL ACR H N ++GE  G+ LL+LEP +   Y LLSN+ A+  RWEE 
Sbjct: 462 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEV 521

Query: 570 RQVRKLMDDSGIQKPPGWSYIE-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
            +VRKLM + GI+  PG S I+   G +H+F+    SHPQ K+I  ML  +  +L+  GY
Sbjct: 522 GEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 581

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
            P+  QV+FD+DEEEKET V  HSEKLA+ FGLIN+    TIRI KNLR+C DCH A KL
Sbjct: 582 EPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKL 641

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S++Y REI+VRD IR+H F+ G CSC DFW
Sbjct: 642 ISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 217/508 (42%), Gaps = 111/508 (21%)

Query: 6   LEHSSLLALLES--CKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRS 61
           L H ++L LL +    SL    Q H  I+ +G   + +I+ S + S+  +S  +   F S
Sbjct: 30  LSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFES 89

Query: 62  RI-LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            + +F  +  PN+F+WN +++    ++ P +A++LY  M+      PN +T+P VL +C+
Sbjct: 90  SLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHF-RPNKYTYPAVLKACS 148

Query: 121 RLSSFKSGCQIHCHIIKFGL--------------------------------EFDLFIRN 148
                  G Q+H H++K GL                                E D    N
Sbjct: 149 DAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWN 208

Query: 149 ALIHFYSIFGYINNAHKVFEGSLARDLVS-YNTLINGYAQ-------------------- 187
           A+I  Y  FG +  A ++FEG   R ++S +N +I+G+++                    
Sbjct: 209 AMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI 268

Query: 188 ---------VKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
                    ++E C   AL +F +MQ   I+P  F   ++ SAC  L     G+  H   
Sbjct: 269 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 328

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +N   +  + +L T++++MYAKCG +++A  VF  M  +K  ++W++MI G    G+ E
Sbjct: 329 KRN--SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 385

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A  LF +MD                                  I+P+E+T V VL AC 
Sbjct: 386 DAIDLFSKMD----------------------------------INPNEITFVGVLNACA 411

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             G +  G  +     +       I     ++D+  + G +  A  V   IP    T ++
Sbjct: 412 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE-PTPAV 470

Query: 417 FNSIISGLAQHG---LGETSIAVFREME 441
           + +++    +HG   LGE    +  E+E
Sbjct: 471 WGALLGACRKHGNVELGERVGKILLELE 498



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 136/284 (47%), Gaps = 8/284 (2%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F ++   +   W+ ++ GY +     EAL ++  M  K  + P  F  P VL++CA
Sbjct: 255 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQM-QKEKIRPRKFVLPSVLSACA 313

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L +   G  IH +  +  ++ D  +  +L+  Y+  G I+ A +VFE    +++ S+N 
Sbjct: 314 NLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNA 373

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A       A+ LF KM    I P+  TFV + +AC      + G      + K  
Sbjct: 374 MIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEY 430

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ER 297
           G V   +     ++++  + GL+  AE+V S++    + A W +++    + G +   ER
Sbjct: 431 G-VEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGER 489

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             ++  +++ ++   +T + + Y++ G + +  E+   M+  GI
Sbjct: 490 VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 533


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/714 (37%), Positives = 409/714 (57%), Gaps = 45/714 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
            S+ LA  E+   L++  +IHG  +   ++  I  ++ L+  +A  G      +++ LF  
Sbjct: 334  SAFLAAAETI-DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETE---KAKQLFWG 389

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            +   ++  W+ ++    ++  P+EAL L+  M ++ +  PN  T   +L +CA LS  K 
Sbjct: 390  LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM-KPNRVTLMSILPACADLSLLKL 448

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            G  IHC  +K  ++ DL    AL+  Y+  G+   A   F    +RD+V++N+LINGYAQ
Sbjct: 449  GKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ 508

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            + +P  A+ +F K++ S I PDA T V +  AC  LND   G   H ++ K LG   S+ 
Sbjct: 509  IGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK-LG-FESDC 566

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD- 306
             +K A+I+MYAKCG +  AE                                 LF++ D 
Sbjct: 567  HVKNALIDMYAKCGSLPSAEF--------------------------------LFNKTDF 594

Query: 307  QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             +D V+W  +I+ Y Q G   +A+  F +M     HP+ VT V+VL A   L A   G  
Sbjct: 595  TKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 654

Query: 367  LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             H   I+ + F  N  +  ++IDMYAKCG +D +  +F ++     TVS +N+++SG A 
Sbjct: 655  FHACIIQ-MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK-DTVS-WNAMLSGYAV 711

Query: 427  HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
            HG G+ +IA+F  M+   ++ D V+FV+VL AC H GLVEEG++ F SM + Y IKP +E
Sbjct: 712  HGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLE 771

Query: 486  HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            HY CMVDLL R G  DE  G I+ MP + ++ +W ALL +CR+H N K+GE+A   L+ L
Sbjct: 772  HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 831

Query: 546  EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            EP + AH+V+LS++ A++ RW +A + R  M+D G++K PG S++E    +H F    KS
Sbjct: 832  EPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKS 891

Query: 606  HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            HPQ + + L+   +  K++  GYVP+   V+ +V+EE+KE  +  HSE+LA+ F L+N+ 
Sbjct: 892  HPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTP 951

Query: 666  SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               TI+I KNLR+C DCH   K +S+I  R I+VRDA RFH F+ G CSC D+W
Sbjct: 952  PGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 174/622 (27%), Positives = 294/622 (47%), Gaps = 85/622 (13%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           LL SCK L   LQIH QI+ SG  HH S + LI+ ++L   K  L RS  +F    NP+ 
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH-KCDLARS--VFDSTPNPSR 94

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            +WN+++R Y+RS    EAL +Y  M+ KG+  P+ +TF FVL +C    + + G   H 
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGL-EPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            I + GLE D+FI   L+  YS  G +  A +VF+    RD+V++N +I G +Q ++PC 
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY-KNLGCVGSNMLLKTA 252
           A+  FR MQ   ++P + + + +F    +L++  + +  H  V+ ++     SN L    
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGL---- 269

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM------- 305
            I++Y+KCG +++A RVF  M + +   +W +M++GY   G      +LFD+M       
Sbjct: 270 -IDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI 327

Query: 306 -----------------------------DQR---DLVSWTAMISGYSQVGGFSQALELF 333
                                         QR   D++  T ++  Y++ G   +A +LF
Sbjct: 328 NKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 334 -------------------------------GKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                           +M++  + P+ VT++++L AC  L  L 
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK +H  +        ++   TA++ MYAKCG    AL+ F ++    + +  +NS+I+
Sbjct: 448 LGKSIH-CFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS--RDIVTWNSLIN 504

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
           G AQ G    +I +F ++ L  + PD  T V V+ AC+    +++G      ++  G + 
Sbjct: 505 GYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFES 564

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
                  ++D+ A+ G L  A  L     +  + V W  ++AA   + +AK   I+    
Sbjct: 565 DCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQ 623

Query: 543 LDLEPDHGAHYVLLSNMLAETY 564
           + LE  H      +S + A  Y
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAY 645


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/724 (36%), Positives = 416/724 (57%), Gaps = 46/724 (6%)

Query: 2   KRLVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNG 57
           +  V + ++L+ +L  C   + +++ + +HG  V  GLN  +  ++ LI  +  S C+  
Sbjct: 198 ESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMY--SKCRF- 254

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVL 116
           L  +++LF + D  NI  WN+++ GY+R +       L   M ++   +  + FT   VL
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
             C   S  +S  ++H +  + GL+ +  + NA I  Y+  G + ++ +VF+    + + 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N L+ GYAQ  +P  AL L+ +M DS + PD FT  ++  AC+ +     G++ H   
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +N                                  G++       S++S Y   GK  
Sbjct: 435 LRN----------------------------------GLAVDPFIGISLLSLYICCGKPF 460

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A+ LFD M+ R LVSW  MI+GYSQ G   +A+ LF +M S GI P E+ ++ V  AC 
Sbjct: 461 AAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACS 520

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            L AL  GK LH  +        +IF+++++IDMYAK G I  +  +F ++ +  K V+ 
Sbjct: 521 QLSALRLGKELHC-FALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE--KDVAS 577

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N II+G   HG G+ ++ +F +M  +GLKPD  TF  +L ACSH GLVE+G ++F  ML
Sbjct: 578 WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML 637

Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           N + I+P++EHY C+VD+L R GR+D+A  LI+ MP D +S IW +LL++CR+H N  +G
Sbjct: 638 NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLG 697

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           E    KLL+LEP+   +YVL+SN+ A + +W++ R+VR  M D G+QK  G S+IE  G 
Sbjct: 698 EKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 757

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +H FL   +  P+ +E+    + + +K+ S GY P+T  V+ D++EE+K  ++  HSEKL
Sbjct: 758 VHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKL 817

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A++FGL+N+     +R+ KNLRICGDCH A K +S++  R+I+VRD  RFH F+ G CSC
Sbjct: 818 AISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSC 877

Query: 716 MDFW 719
            D+W
Sbjct: 878 GDYW 881



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 148/616 (24%), Positives = 281/616 (45%), Gaps = 91/616 (14%)

Query: 14  LLESC---KSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           LL++C   K ++   ++H  +  S    N  + ++++I+ +++ G  +    SR++F ++
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSD---SRMVFDKL 60

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F WN ++  Y+R++  ++A+ +++ ++S     P+NFT P V+ +CA L     G
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH    K  L  D+F+ NALI  Y   G +  A KVFE    R+LVS+N++I G+++ 
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 189 KEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                +   FR+M   +    PD  T V +   C    D   G   H +  K LG +   
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVK-LG-LNEE 238

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +++  ++I+MY+KC  ++ A+ +F      K+  +W+SMI GY RE  + R   L  +M 
Sbjct: 239 LMVNNSLIDMYSKCRFLSEAQLLFDKND-KKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297

Query: 307 QRDL------------------------------VSW-----------TAMISGYSQVG- 324
             D                                SW            A I+ Y++ G 
Sbjct: 298 TEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGA 357

Query: 325 ------------------------GFSQ------ALELFGKMESLGIHPDEVTMVAVLRA 354
                                   G++Q      AL+L+ +M   G+ PD  T+ ++L A
Sbjct: 358 LCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 417

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  + +L +G+ +H   + N +   + F+  +++ +Y  CG    A  +F  +    +++
Sbjct: 418 CSRMKSLHYGEEIHGFALRNGL-AVDPFIGISLLSLYICCGKPFAAQVLFDGMEH--RSL 474

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +N +I+G +Q+GL + +I +FR+M   G++P  +  + V  ACS    +  GK+    
Sbjct: 475 VSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCF 534

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
            L   +   +     ++D+ A+ G +  +  +   +  + +   W  ++A   +H   K 
Sbjct: 535 ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL-REKDVASWNVIIAGYGIHGRGKE 593

Query: 535 GEIAGQKL--LDLEPD 548
                +K+  L L+PD
Sbjct: 594 ALELFEKMLRLGLKPD 609



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 98/196 (50%), Gaps = 18/196 (9%)

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           M  +L+AC     ++ G+RLH+    +  F  +  L T +I MY+ CGS   +  VF K+
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVE 466
            +  K +  +N+I+S   ++ L E ++++F E+  +   KPD  T   V+ AC+  GL++
Sbjct: 61  RR--KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLD 116

Query: 467 EGKQFFESMLNYGIKPQMEHY------GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            G       + +G+  +M+          ++ +  + G ++EA  + + MP + N V W 
Sbjct: 117 LGL----GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWN 171

Query: 521 ALLAACRLHRNAKIGE 536
           +++  C    N  + E
Sbjct: 172 SII--CGFSENGFLQE 185


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/772 (35%), Positives = 431/772 (55%), Gaps = 69/772 (8%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           L +SSL+       S ++   IH Q++ +G N      ++++  +A SGC + L  +R L
Sbjct: 72  LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKL 131

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++   N+  WNT++  Y+R D   EA  ++  ML  G V P+NFTF   L  C  L S
Sbjct: 132 FEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIG-VCPDNFTFASALRVCGALRS 190

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G Q+H  +I  G + D F+ NALI  Y+      +  KVF+    R+ V++N++I+ 
Sbjct: 191 RDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISA 250

Query: 185 YAQVKEPCPALWLFRKMQDS--CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            AQ      AL LF +MQ+S   IQPD FTF  + + C    +   G+Q HA + +    
Sbjct: 251 EAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR--AN 308

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  N++++T +++MY++CG +N A+ +F+ M   ++  +W+SMI GY + G+ + A +LF
Sbjct: 309 ITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLF 367

Query: 303 DQMD----QRDLVSWTAMISGYSQVGGFSQALELFG-----KMESLGIHPDEVTMVAVLR 353
            QM     + D  S ++M+S    +    +  EL        ME  GI   +V +V +  
Sbjct: 368 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL--QVVLVDMYA 425

Query: 354 ACVGLGALDFGKRLHQQYIE---NVVFGRNIF---------------------------- 382
            C   G++D+  +++ Q I+   N     +I                             
Sbjct: 426 KC---GSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDV 482

Query: 383 -----------LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
                      L TA++DMY+KCG+I  A +VF  +  N K +  +N++ISG ++HG  +
Sbjct: 483 LTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNM--NGKNIVSWNAMISGYSKHGCSK 540

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCM 490
            ++ ++ EM   G+ P+ VTF+ +L ACSH GLVEEG + F SM  +Y I+ + EHY CM
Sbjct: 541 EALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCM 600

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R GRL++A   ++ MP +     W ALL ACR+H++  +G +A Q+L +L+P + 
Sbjct: 601 VDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNP 660

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
             YV++SN+ A   RW+E   +R++M   G++K PG S+IE N  +  F A  K+HP+T+
Sbjct: 661 GPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTE 720

Query: 611 EIELMLKDMTMKLKSAGYVPNT---VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           EI   L+ +T++ K  GY+P+T   +Q V D+ EEE+E  +  HSE+LAL+ GLI+   K
Sbjct: 721 EIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKK 780

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            TIR+ KNLRICGDCH A K +S+I  R I+ RD  RFH F+ G CSC D+W
Sbjct: 781 STIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 221/459 (48%), Gaps = 58/459 (12%)

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           T+   ++  DSP+      TS+ +K     N   +  ++  C   +SF+ G  IH  +I 
Sbjct: 45  TIKLKFNGPDSPKP-----TSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMIS 99

Query: 138 FGLEFDLFIRNALIHFYSIFGYINN---AHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            G   D ++   ++  Y+  G +++   A K+FE    R+L ++NT+I  YA+V +   A
Sbjct: 100 NGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEA 159

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAV 253
             +F +M    + PD FTF +    C  L     GKQ H+   K + C    +  +  A+
Sbjct: 160 WGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHS---KLIACGFKGDTFVGNAL 216

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+MYAKC       +VF  MG  ++   W+S                             
Sbjct: 217 IDMYAKCDDEESCLKVFDEMG-ERNQVTWNS----------------------------- 246

Query: 314 TAMISGYSQVGGFSQALELFGKMESL--GIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
             +IS  +Q G F+ AL LF +M+    GI PD+ T   +L  C      + G+++H   
Sbjct: 247 --IISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL 304

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I   +  +NI + T ++ MY++CG ++ A  +F ++ +  +    +NS+I G  Q+G  +
Sbjct: 305 IRANI-TKNIIVETELVHMYSECGRLNYAKEIFNRMAE--RNAYSWNSMIEGYQQNGETQ 361

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG--- 488
            ++ +F++M+L G+KPD  +  ++L +C      ++G++      N+ ++  ME  G   
Sbjct: 362 EALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELH----NFIVRNTMEEEGILQ 417

Query: 489 -CMVDLLARDGRLDEAYGLI-QSMPYDANSVIWRALLAA 525
             +VD+ A+ G +D A+ +  Q++  D N+ +W ++LA 
Sbjct: 418 VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG 456


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 393/625 (62%), Gaps = 13/625 (2%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSR 62
           ++++ + LL+LLE+C S+ +  +IH Q++ +GL +   + S+L++F A+S  +N  +  +
Sbjct: 50  VLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK 109

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           IL +   N N+F WN  +RGY  S++P  A++LY +ML KG   P+N+T+P +   CA  
Sbjct: 110 IL-NNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S   +  +I  H+I+ G + DLF+ NA+IH     G +  A K+F+ S  RDLVS+N++I
Sbjct: 169 SLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSII 228

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           NGY +      A  L+ KM +  + PD  T + + SA  +L +  +G++ H  + +    
Sbjct: 229 NGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE---- 284

Query: 243 VGSNML--LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           +G N+   L  A+++MY KC  +  A+ +F  M   K+  +W++M+ GY + G +E A +
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENM-TKKTVVSWTTMVIGYAKFGLLESAVR 343

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF++M ++D+V W A+I G+ Q     +AL LF +M++  + PD++T+V  L AC  LGA
Sbjct: 344 LFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGA 403

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G  +H  Y++      N+ L TA++DMYAKCG+I  A+ VF ++P   +    + +I
Sbjct: 404 LDVGIWMHH-YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG--RNSLTWTAI 460

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I GLA HG    +I+ F EM  +GL PD +TF+ VL AC HGGLV++G+ +F  M + YG
Sbjct: 461 ICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYG 520

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I P+++HY C+VDLL R G L+EA  LI+SMP++ ++V+W AL    R+H N  +GE A 
Sbjct: 521 ISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAA 580

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
            KLL+L+P  G  YVLL+NM  +   WE+AR+VRK+M++ G++K PG S IE NG ++ F
Sbjct: 581 SKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDF 640

Query: 600 LASKKSHPQTKEIELMLKDMTMKLK 624
           +   KSHPQ+++I   L  +T +++
Sbjct: 641 IIRDKSHPQSEKIYECLTRLTRQIE 665


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/608 (40%), Positives = 382/608 (62%), Gaps = 13/608 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           + LL+LLE+CKS  Q  QI  Q++ +GL     +SS+LISF A+S  +N  +  +IL + 
Sbjct: 54  NPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKIL-NN 112

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + NPN+F WN ++RG   S++PQ+ LVLY  ML++    P+N+T+ F+   CA L     
Sbjct: 113 LQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYM 172

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +I   ++K G + D+++ N +IH     G    AHKVF+    RDLVS+N+LINGY +
Sbjct: 173 GFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVR 232

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            ++P  A+ ++++M    ++PD  T + + SAC +L   ++G++ H  + ++    G N+
Sbjct: 233 RRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEES----GLNL 288

Query: 248 L--LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
              L  A+++MY KCG +   + +F  M   K+  +W++MI GY + G ++ A +LF  M
Sbjct: 289 KISLVNALMDMYVKCGDLEAGKVLFDNM-RKKTVVSWTTMIVGYAKNGLLDMAGKLFHDM 347

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            ++++V+W AMI    Q     +ALELF +M+   + PD+VTM+  L AC  LGALD G 
Sbjct: 348 PEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGM 407

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
             H  YI+      ++ L TA+IDMYAKCG++  AL VF ++P+  +    + +II GLA
Sbjct: 408 WTHN-YIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPR--RNSLTWTAIIGGLA 464

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
            +G    +I  F +M   GL PD +TF+ VL AC HGGLVEEG+++F+ M + + + PQ 
Sbjct: 465 LYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQP 524

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           +HY CMV+LL R G L+EA  LI++MP +A++++W AL  AC +HRN  IGE A  KLLD
Sbjct: 525 KHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLD 584

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           L+P     YVLL+NM  E  +WEEA+ +RK+M + G++K PG S IE NG ++ F+   K
Sbjct: 585 LDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDK 644

Query: 605 SHPQTKEI 612
           SHPQ+++I
Sbjct: 645 SHPQSEQI 652


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/710 (36%), Positives = 416/710 (58%), Gaps = 12/710 (1%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++    +     +QIHG I+       +   + L+ F+A  G    L  +R +F ++  
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECG---ELDCARKVFDEMSE 196

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            N+  W +++ GY+R +  ++A+ L+  M+    V PN+ T   V+++CA+L   ++G +
Sbjct: 197 RNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEK 256

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           ++  I   G+E +  + +AL+  Y     I+ A ++F+   A +L   N + + Y +   
Sbjct: 257 VYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGL 316

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL +   M DS I+PD  + ++  S+C++L +   GK  H  V +N      N+   
Sbjct: 317 TKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-- 374

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+MY KC   + A R+F  M  +K+   W+S+++GY   G+++ A + F+ M ++++
Sbjct: 375 NALIDMYMKCHRQDTAFRIFDRMS-NKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNI 433

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           VSW  +IS   Q   + +A+E+F  M+S   ++ D VTM+++  AC  LGALD  K ++ 
Sbjct: 434 VSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYY 493

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YIE      ++ L T ++DM+++CG  ++A+S+F  +    + VS + + I  +A  G 
Sbjct: 494 -YIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTN--RDVSAWTAAIGAMAMAGN 550

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
            E +I +F EM   GLKPDGV F+  L AC HGGLV++GK+ F SM   +G+ P+  HYG
Sbjct: 551 VERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYG 610

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R G L+EA  LI+ MP + N VIW +LLAACR+  N ++   A +K+  L P+
Sbjct: 611 CMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPE 670

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
               YVLLSN+ A   RW +  +VR  M + G++KPPG S I+  G  H F +  +SHP+
Sbjct: 671 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPE 730

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
            ++IE ML +++ +    G+VP+   V+ DVDE+EK  ++S HSEKLA+AFGLI+S    
Sbjct: 731 MRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGT 790

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           TIRI KNLR+C  CH   K  S++Y REI++RD  RFH  ++G CSC DF
Sbjct: 791 TIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/531 (27%), Positives = 263/531 (49%), Gaps = 73/531 (13%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDN-PN 72
           L++CK++ +    H  +   GL+  +S+ ++L++     G +  L  ++ +F   ++   
Sbjct: 38  LKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGT 97

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
            F++N+L+RGY+ S   +EA++L+  M++ GI SP+ +TFPF L+ CA+     +G QIH
Sbjct: 98  CFMYNSLIRGYASSGLCKEAILLFIRMMNSGI-SPDKYTFPFGLSVCAKSRDKGNGIQIH 156

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             IIK     DLF++N+L+HFY+  G ++ A KVF+    R++VS+ ++I GYA+ +   
Sbjct: 157 GLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAK 216

Query: 193 PALWL-FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
            A+ L FR ++D  + P++ T V + SAC +L D   G++ +  + ++ G +  N L+ +
Sbjct: 217 DAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFI-RDSG-IEVNDLMIS 274

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+++MY KC  +++A+R+F   G S                                +L 
Sbjct: 275 ALVDMYMKCNAIDIAKRLFDEYGAS--------------------------------NLD 302

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
              AM S Y + G   +AL +   M   GI PD ++M++ + +C  L  + +GK  H   
Sbjct: 303 LCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYV 362

Query: 372 IENVVFGRNIFLTTAVIDMYAKC-------------------------------GSIDTA 400
           + N  F     +  A+IDMY KC                               G +D A
Sbjct: 363 LRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAA 421

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCAC 459
              F  +P+  K +  +N+IIS L Q  + E +I VF  M+    +  DGVT +++  AC
Sbjct: 422 WETFNTMPE--KNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASAC 479

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            H G ++  K  +  +    I+  +     +VD+ +R G  + A  +  S+
Sbjct: 480 GHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 530


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 278/794 (35%), Positives = 433/794 (54%), Gaps = 92/794 (11%)

Query: 8   HSSLLAL--LESCKSLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRI 63
           + SLL +  L+S  S   A  +H  ++ SG     HI + +LI  ++ S   + L  +R 
Sbjct: 14  YGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILN-RLIDIYSKS---SKLNYARY 69

Query: 64  LFSQIDNPNIFIWNTLMRGYSR-----------SDSP--QEALVLYTSMLS--------- 101
           LF +I  P+I    TL+  YS            SD+P      V Y +M++         
Sbjct: 70  LFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGH 129

Query: 102 ----------KGIVSPNNFTFPFVLNSCARLSSFKSGCQ-IHCHIIKFGLEFDLFIRNAL 150
                     +    P+N+TF  VL + A ++  +  CQ +HC ++K G  F   + NAL
Sbjct: 130 AAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNAL 189

Query: 151 IHFYS-----------------------------------IFGYINN-----AHKVFEGS 170
           I  Y                                    I GY+ N     A +   G+
Sbjct: 190 ISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGT 249

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             +  V++N +I+GYA       A  +FRKM  S IQ D FTF ++ S C      R+GK
Sbjct: 250 SKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGK 309

Query: 231 QFHAVVYKNLGCVGSN--MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           + HA   K +     +  M +  A+I  Y KCG +++A+ +F+ M   +   +W+ ++SG
Sbjct: 310 EMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILSG 368

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y     ++ A+  F++M +++++SW  MISG +Q+G   +AL+ F +M+  G  P +   
Sbjct: 369 YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAF 428

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT--AVIDMYAKCGSIDTALSVFYK 406
              + +C  LG+L  G++LH Q +    +G    L+   A+I MYA+CG +D A  +F  
Sbjct: 429 AGAIISCSVLGSLKHGRQLHAQVVR---YGYESSLSAGNALITMYARCGVVDAAHCLFIN 485

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +P  +  +S +N++I+ L QHG G  +I +F EM   G+ PD ++F+TV+ ACSH GLV+
Sbjct: 486 MP-CVDAIS-WNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVK 543

Query: 467 EGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+++F+SM N YG+ P  EHY  ++DLL R G+  EA  +++SMP++  + IW ALLA 
Sbjct: 544 EGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAG 603

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR+H N  +G  A ++L +L+P H   YVLLSNM A   +W +  +VRKLM D G++K P
Sbjct: 604 CRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEP 663

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S+IE    +H FL    +HP+ ++I   L+ + ++++  GYVP+T  V+ DV+ + KE
Sbjct: 664 GCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKE 723

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             +S HSEKLA+A+G +      T+R+ KNLRICGDCH AFK +S++  REI+VRD  RF
Sbjct: 724 HELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 783

Query: 706 HLFKKGNCSCMDFW 719
           H F+ G CSC D+W
Sbjct: 784 HHFRDGKCSCGDYW 797


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/611 (40%), Positives = 369/611 (60%), Gaps = 14/611 (2%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK--VFEGSLA 172
           VL+ C  ++  K   Q+H HI + GLE   F+   L+   +      + +   VF+    
Sbjct: 45  VLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            +   +  LI GYA       ++ L+  M+   I P +FTF A+  AC+   D  +G+Q 
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQV 161

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H      +G  GS++ +   +I+MY KCG +    RVF  M + +   +W+S+I  Y + 
Sbjct: 162 HTQTIL-IGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIVAYAKV 219

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +E A +LFD +  +D+V+WTAM++GY+Q     +ALE+F +M++ G+  DEVT+V V+
Sbjct: 220 GNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVI 279

Query: 353 RACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            AC  LGA  +   + +   E   FG   N+ + +A+IDMYAKCGS++ A  VF ++ + 
Sbjct: 280 SACAQLGAAKYANWV-RDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEE- 337

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + V  ++S+I G A HGL   ++ +F EM    +KP+ VTF+ VL ACSH G+VE+G+Q
Sbjct: 338 -RNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQ 396

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            F  M   +G+ P  +HY CMVDLL R GRL+EA  L++ MP + +  +W ALL ACR+H
Sbjct: 397 LFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIH 456

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            N  + +IA   L +LEP+   +Y+LLSN+ A   RW++  +VRKLM   G++K PG S+
Sbjct: 457 GNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSW 516

Query: 590 IE-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           +E   G +H F A   SHP+++EI+  L+D+  +LK  GY PN   V +D+ +EEK+ ++
Sbjct: 517 VEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLL 576

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLALAFGL+ + +  TIRI KNLRIC DCH      S+I  REI+VRD +RFH F
Sbjct: 577 MSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHF 636

Query: 709 KKGNCSCMDFW 719
           + G CSC +FW
Sbjct: 637 RDGRCSCGNFW 647



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 179/382 (46%), Gaps = 55/382 (14%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-------- 60
           S L+++L  C  + Q  Q+H  I   GL            F L+     L +        
Sbjct: 40  SRLVSVLHGCTHINQVKQVHAHIFRKGLEQ--------CCFVLAKLLRTLTKLDVPMDPY 91

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            R++F Q++ PN F+W  L+RGY+      E+++LY SM  +GI  P +FTF  +L +C+
Sbjct: 92  PRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGI-GPVSFTFTALLKACS 150

Query: 121 RLSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
                  G Q+H   I   G   DL++ N LI  Y   G +   H+VF+  L RD++S+ 
Sbjct: 151 AALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWT 210

Query: 180 TLI-------------------------------NGYAQVKEPCPALWLFRKMQDSCIQP 208
           +LI                                GYAQ   P  AL +F +MQ + ++ 
Sbjct: 211 SLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKT 270

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           D  T V + SAC +L   +       V  ++     SN+++ +A+I+MYAKCG +  A +
Sbjct: 271 DEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYK 330

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVG 324
           VF  M   ++  ++SSMI G+   G    A +LFD+M + ++    V++  +++  S  G
Sbjct: 331 VFERM-EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAG 389

Query: 325 GFSQALELFGKMESL-GIHPDE 345
              Q  +LF  ME   G+ P E
Sbjct: 390 MVEQGQQLFAMMEECHGVAPSE 411


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/719 (37%), Positives = 416/719 (57%), Gaps = 44/719 (6%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           RLV+   SL  LL + K      +IH  ++ +G+  H  S+++LI  +A  G    +  +
Sbjct: 2   RLVVGSKSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLG---HIESA 58

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R +F +     +  WN ++  YSR  +  EAL LY  M S+G V P++ T+  VL +C R
Sbjct: 59  RQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEG-VRPDSSTYTVVLKACTR 117

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
               +SG +     +  G   D+F+  A+++ Y+  G ++ A +VF+    RDLV + T+
Sbjct: 118 SLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTM 177

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I G AQ  +   A+ ++R+M    ++ D    + +  ACT L   ++G   H  + +   
Sbjct: 178 ITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRK-- 235

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            +  +++++T++++MYAK                                 G +E A  +
Sbjct: 236 DIIMDVIVQTSLVDMYAK--------------------------------NGHLELASCV 263

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F +M  ++++SW+A+ISG++Q G    AL+L   M+S G  PD V++V+VL AC  +G L
Sbjct: 264 FRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFL 323

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             GK +H   +  + F  +   +TAVIDMY+KCGS+  A +VF +I  + +    +N+II
Sbjct: 324 KLGKSVHGYIVRRLHF--DCVSSTAVIDMYSKCGSLSFARTVFDQI--SFRDSISWNAII 379

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
           +    HG GE ++++F +M    +KPD  TF ++L A SH GLVE+G+ +F  M+N Y I
Sbjct: 380 ASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKI 439

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P  +HY CMVDLL+R GR++EA  LI+SM  +    IW ALL+ C  H    IGE+A +
Sbjct: 440 QPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAK 499

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           K+L+L PD    Y L+SN  A   RW+E  +VRK+M  +G++K PG+S +E NG LH FL
Sbjct: 500 KVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFL 559

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              KSH Q +EI  +L  +  ++K+ GYVP T  V+ +++EE KE ++  HSE+LA+AFG
Sbjct: 560 MEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFG 619

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+N+     + ITKNLR+CGDCH A K +S+I  REI+VRD  RFH FK G CSC D+W
Sbjct: 620 LLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 398/715 (55%), Gaps = 46/715 (6%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILF 65
           +L  +L+ C    SL++   +H   + SG          L+  ++  G    ++ +  +F
Sbjct: 53  TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGT---VYDALKVF 109

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           ++I NP++  W+ ++ G  +    QEA  L+  M  KG   PN FT   ++++   +   
Sbjct: 110 TKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKG-ARPNQFTLSSLVSTATNMGDL 168

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  IH  I K+G E D  + N LI  Y     + + +KVFE     DLVS+N L++G+
Sbjct: 169 RYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGF 228

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
              +       +F +M     +P+ FTF+++  +C+ L DP  GKQ HA + KN      
Sbjct: 229 YDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN--SSDD 286

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  + TA+++MYAK   +                                E A   FD++
Sbjct: 287 DDFVGTALVDMYAKARCL--------------------------------EDAGVAFDRL 314

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             RD+ SWT +ISGY+Q     +A++ F +M+  GI P+E T+ + L  C  +  L+ G+
Sbjct: 315 VNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGR 374

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           +LH   ++   FG +IF+ +A++D+Y KCG ++ A ++F  +    + +  +N+IISG +
Sbjct: 375 QLHAVAVKAGHFG-DIFVGSALVDLYGKCGCMEHAEAIFKGLIS--RDIVSWNTIISGYS 431

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
           QHG GE ++  FR M   G+ PD  TF+ VL ACS  GLVEEGK+ F+SM   YGI P +
Sbjct: 432 QHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSI 491

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY CMVD+L R G+ +E    I+ M     S+IW  +L AC+LH N   GE A +KL +
Sbjct: 492 EHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFE 551

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           +EP   + Y+LLSN+ A   RW++ R +R LM   GI+K PG S++E +G +H FL+   
Sbjct: 552 MEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDG 611

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHP+ +EI   L  +   L S GYVP T  V+ +V  +EK   + YHSE+LAL+F L+++
Sbjct: 612 SHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLST 671

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + + IRI KNLRIC DCH   KL+S+I  +EI+VRD  RFH FK+G CSC D W
Sbjct: 672 NAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 37/341 (10%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F G   ++ VS+N L+NGYAQ+ +    L LF KM++   +   FT   +   C  
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
               R GK  HA+  ++ GC   +  L  ++++MY+KCG                     
Sbjct: 64  TGSLREGKVLHALALRS-GCE-IDEFLGCSLVDMYSKCG--------------------- 100

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       +  A ++F ++   D+V+W+AMI+G  Q G   +A ELF  M   G  
Sbjct: 101 -----------TVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGAR 149

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P++ T+ +++     +G L +G+ +H   I    F  +  ++  +I MY K   ++    
Sbjct: 150 PNQFTLSSLVSTATNMGDLRYGQSIHG-CICKYGFESDNLVSNPLIMMYMKSRCVEDGNK 208

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +  N   VS +N+++SG            +F +M L G KP+  TF++VL +CS  
Sbjct: 209 VFEAMT-NPDLVS-WNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSL 266

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
              E GKQ    ++             +VD+ A+   L++A
Sbjct: 267 LDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDA 307



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +E A +LF  M +++ VSW A+++GY+Q+G   + L+LF KM+       + T+  VL+ 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           C   G+L  GK LH   + +   G  I  FL  +++DMY+KCG++  AL VF KI +N  
Sbjct: 61  CANTGSLREGKVLHALALRS---GCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI-RNPD 116

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V+ ++++I+GL Q G G+ +  +F  M   G +P+  T  +++   ++ G +  G+   
Sbjct: 117 VVA-WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIH 175

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             +  YG +        ++ +  +   +++   + ++M  + + V W ALL+ 
Sbjct: 176 GCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/631 (41%), Positives = 368/631 (58%), Gaps = 51/631 (8%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-------ARDLVSYNTLI 182
           Q H  I++ G   D +I  +L+  Y+      N +  FE SL         ++  +N +I
Sbjct: 53  QAHALILRTGHLQDSYIAGSLVKSYANVS--TNRYLSFESSLRVFDFVRKPNVFLWNCMI 110

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
               +  EP  A+ L+ +M  +  +P+ +T+ A+  AC++      G Q HA + K+ G 
Sbjct: 111 KVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKH-GL 169

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
            G   +L +A I MYA  G +  A R+    G       W++MI GY R G++E AR+LF
Sbjct: 170 GGDGHILSSA-IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELF 228

Query: 303 --------------------------------DQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                           D+M +RD +SW+AMI GY Q G F +AL
Sbjct: 229 EGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEAL 288

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
           E+F +M+   I P +  + +VL AC  LGALD G+ +H     N +    + L T+++DM
Sbjct: 289 EIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV-LGTSLVDM 347

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           YAKCG ID A  VF K+    K VS +N++I GLA HG  E +I +F +M++    P+ +
Sbjct: 348 YAKCGRIDLAWEVFEKMSN--KEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIY---PNEI 402

Query: 451 TFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           TFV VL AC+HGGLV++G   F SM   YG++PQ+EHYGC+VDLL R G L EA  ++ S
Sbjct: 403 TFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSS 462

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
           +P +    +W ALL ACR H N ++GE  G+ LL+LEP +   Y LLSN+ A+  RWEE 
Sbjct: 463 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEV 522

Query: 570 RQVRKLMDDSGIQKPPGWSYIE-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
            +VRKLM + GI+  PG S I+   G +H+F+    SHPQ K+I  ML  +  +L+  GY
Sbjct: 523 GEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 582

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
            P+  QV+FD+DEEEKET V  HSEKLA+ FGLIN+    TIRI KNLR+C DCH A KL
Sbjct: 583 EPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKL 642

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S++Y REI+VRD IR+H F+ G CSC DFW
Sbjct: 643 ISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 217/508 (42%), Gaps = 111/508 (21%)

Query: 6   LEHSSLLALLES--CKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRS 61
           L H ++L LL +    SL    Q H  I+ +G   + +I+ S + S+  +S  +   F S
Sbjct: 31  LSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFES 90

Query: 62  RI-LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            + +F  +  PN+F+WN +++    ++ P +A++LY  M+      PN +T+P VL +C+
Sbjct: 91  SLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAH-SRPNKYTYPAVLKACS 149

Query: 121 RLSSFKSGCQIHCHIIKFGL--------------------------------EFDLFIRN 148
                  G Q+H H++K GL                                E D    N
Sbjct: 150 DSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWN 209

Query: 149 ALIHFYSIFGYINNAHKVFEGSLARDLVS-YNTLINGYAQ-------------------- 187
           A+I  Y  FG +  A ++FEG   R ++S +N +I+G+++                    
Sbjct: 210 AMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI 269

Query: 188 ---------VKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
                    ++E C   AL +F +MQ   I+P  F   ++ SAC  L     G+  H   
Sbjct: 270 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 329

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +N   +  + +L T++++MYAKCG +++A  VF  M  +K  ++W++MI G    G+ E
Sbjct: 330 KRN--SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 386

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A  LF +MD                                  I+P+E+T V VL AC 
Sbjct: 387 DAIDLFSKMD----------------------------------IYPNEITFVGVLNACA 412

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             G +  G  +     +       I     ++D+  + G +  A  V   IP    T ++
Sbjct: 413 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE-PTPAV 471

Query: 417 FNSIISGLAQHG---LGETSIAVFREME 441
           + +++    +HG   LGE    +  E+E
Sbjct: 472 WGALLGACRKHGNVELGERVGKILLELE 499



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 136/284 (47%), Gaps = 8/284 (2%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F ++   +   W+ ++ GY +     EAL ++  M  K  + P  F  P VL++CA
Sbjct: 256 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQM-QKEKIRPRKFVLPSVLSACA 314

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L +   G  IH +  +  ++ D  +  +L+  Y+  G I+ A +VFE    +++ S+N 
Sbjct: 315 NLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNA 374

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A       A+ LF KM    I P+  TFV + +AC      + G      + K  
Sbjct: 375 MIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEY 431

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ER 297
           G V   +     ++++  + GL+  AE+V S++    + A W +++    + G +   ER
Sbjct: 432 G-VEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGER 490

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             ++  +++ ++   +T + + Y++ G + +  E+   M+  GI
Sbjct: 491 VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 534


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 413/723 (57%), Gaps = 46/723 (6%)

Query: 2   KRLVLEHSSLLALLESCKS---LKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNG 57
           +RL  +  + +++L +C S   L    +IH +++ +GL N     + LIS +A  G    
Sbjct: 123 ERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCG---S 179

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           +  +R +F  + + +   W TL   Y+ S   +E+L  Y +ML +  V P+  T+  VL+
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQER-VRPSRITYMNVLS 238

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +C  L++ + G QIH HI++     D+ +  AL   Y   G   +A +VFE    RD+++
Sbjct: 239 ACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIA 298

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +NT+I G+    +   A   F +M +  + PD  T+  + SAC        GK+ HA   
Sbjct: 299 WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAA 358

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K+ G V S++    A+INMY+K G M                                + 
Sbjct: 359 KD-GLV-SDVRFGNALINMYSKAGSM--------------------------------KD 384

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           ARQ+FD+M +RD+VSWT ++  Y+      ++   F +M   G+  +++T + VL+AC  
Sbjct: 385 ARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSN 444

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
             AL +GK +H + ++  +   ++ +T A++ MY KCGS++ A+ VF  +  +++ V  +
Sbjct: 445 PVALKWGKEIHAEVVKAGLLA-DLAVTNALMSMYFKCGSVEDAIRVFEGM--SMRDVVTW 501

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-L 476
           N++I GL Q+G G  ++  +  M+  G++P+  TFV VL AC    LVEEG++ F  M  
Sbjct: 502 NTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSK 561

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +YGI P  +HY CMVD+LAR G L EA  +I ++P   ++ +W ALLAACR+H N +IGE
Sbjct: 562 DYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGE 621

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A +  L LEP +   YV LS + A    W +  ++RK M + G++K PG S+IE  G +
Sbjct: 622 RAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEV 681

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F+A  +SHP+T+EI   L+ +  ++KS GYVP+T  V+ D+D+E KE  V +HSEKLA
Sbjct: 682 HSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLA 741

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +A+GLI++     IRI+KNLR+C DCH A K +S+I +REI+ RDA RFH FK G CSC 
Sbjct: 742 IAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCG 801

Query: 717 DFW 719
           D+W
Sbjct: 802 DYW 804



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 249/520 (47%), Gaps = 54/520 (10%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           + LL+SC   K L    Q+H  I+  G+  ++  ++ L+  +A  G  N    +R LF +
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVN---EARQLFDK 88

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             N ++  WN ++ GY+     QEA  L+T ++ +  + P+ FTF  +L++C+  +    
Sbjct: 89  FSNKSVVSWNVMISGYAHRGLAQEAFNLFT-LMQQERLEPDKFTFVSILSACSSPAVLNW 147

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +IH  +++ GL  D  + NALI  Y+  G + +A +VF+   +RD VS+ TL   YA+
Sbjct: 148 GREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 207

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 +L  +  M    ++P   T++ + SAC  L     GKQ HA + ++     S++
Sbjct: 208 SGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESE--YHSDV 265

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + TA+  MY KCG    A  VF  +   +   AW++MI G+   G++E A   F +M +
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSY-RDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 308 R----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                D  ++T ++S  ++ GG ++  E+  +    G+                      
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGL---------------------- 362

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
                   + +V FG       A+I+MY+K GS+  A  VF ++PK  + V  + +++  
Sbjct: 363 --------VSDVRFG------NALINMYSKAGSMKDARQVFDRMPK--RDVVSWTTLLGR 406

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            A       S   F++M   G+K + +T++ VL ACS+   ++ GK+    ++  G+   
Sbjct: 407 YADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLAD 466

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           +     ++ +  + G +++A  + + M    + V W  L+
Sbjct: 467 LAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLI 505



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 203/416 (48%), Gaps = 38/416 (9%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           +++ +  +L SC +      G Q+H HI++ G++ +++I N L+  Y+  G +N A ++F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +    + +VS+N +I+GYA       A  LF  MQ   ++PD FTFV++ SAC+      
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G++ H  V +    + ++  +  A+I+MYAKCG +  A RVF  M  S+   +W+++  
Sbjct: 147 WGREIHVRVME--AGLANDTTVGNALISMYAKCGSVRDARRVFDAMA-SRDEVSWTTLTG 203

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y                            SGY +     ++L+ +  M    + P  +T
Sbjct: 204 AYAE--------------------------SGYGE-----ESLKTYHAMLQERVRPSRIT 232

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
            + VL AC  L AL+ GK++H   +E+  +  ++ ++TA+  MY KCG+   A  VF  +
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVES-EYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
             + + V  +N++I G    G  E +   F  M   G+ PD  T+ TVL AC+  G +  
Sbjct: 292 --SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLAR 349

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           GK+        G+   +     ++++ ++ G + +A  +   MP   + V W  LL
Sbjct: 350 GKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 4/201 (1%)

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
           G+    ++   +   G   D    V +L++CV    L  GK++H+  +   V   N+++T
Sbjct: 8   GWYAPADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGV-KPNVYIT 66

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
             ++ +YA CGS++ A  +F K     K+V  +N +ISG A  GL + +  +F  M+   
Sbjct: 67  NTLLKLYAHCGSVNEARQLFDKFSN--KSVVSWNVMISGYAHRGLAQEAFNLFTLMQQER 124

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           L+PD  TFV++L ACS   ++  G++    ++  G+         ++ + A+ G + +A 
Sbjct: 125 LEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDAR 184

Query: 505 GLIQSMPYDANSVIWRALLAA 525
            +  +M    + V W  L  A
Sbjct: 185 RVFDAMA-SRDEVSWTTLTGA 204


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/616 (38%), Positives = 381/616 (61%), Gaps = 20/616 (3%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI---------HFYSIFGYINNAHK 165
           +L SC+  S  K    IH  +++  L  D+F+ + L+          F+     +  A+ 
Sbjct: 18  LLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYG 74

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
           +F      +L  +N LI  ++   EP  A   + +M  S I PD  TF  +  A TE+  
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
             +G+Q H+ + +  G   +++ ++ ++++MYA CGL+  A R+F  M   +   +W+SM
Sbjct: 135 VVVGEQTHSQIVR-FG-FQNDVYVENSLVHMYANCGLIAAAGRIFGQMPF-RDVVSWTSM 191

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           ++GY + G +E AR++FD+M  R+L +W+ MI+GY++   F +A++LF  M+  G+  +E
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANE 251

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
             MV+V+ +C  LGAL+FG+R H+ Y+       N+ L TA++DMY +CG I+ A+ VF 
Sbjct: 252 TVMVSVISSCAHLGALEFGERAHE-YVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFE 310

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++P   K    ++SII GLA HG    +I  F +M  +G  P  +T   VL ACSHGGLV
Sbjct: 311 ELPD--KDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLV 368

Query: 466 EEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++G + +E+M  +YGI+P++EHYGC+VD+L R G+L EA   I  MP   N+ I  ALL 
Sbjct: 369 DKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLG 428

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           AC++++N ++ E  G  L++++P+H  +YVLLSN+ A   +WE+   +R +M +  ++KP
Sbjct: 429 ACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKP 488

Query: 585 PGWSYIEHNGTLHRF-LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
           PGWS IE +G +++F +   + HP+  +I+ + +++  K++  GY  NT    FDVDEEE
Sbjct: 489 PGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEE 548

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KET +  HSEKLA+A+G++ +++  TIRI KNLR+C DCH A KL+SE+Y RE +VRD  
Sbjct: 549 KETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRN 608

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH F+ G CSC D+W
Sbjct: 609 RFHHFRNGLCSCRDYW 624



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 196/438 (44%), Gaps = 79/438 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS-FFALSGC---------KNGLFRS 61
           LALL+SC S      IHG ++ +   H IS   + S   AL+ C          N L  +
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRT---HLISDVFVASRLLALALCVDDSTFHKPTNLLGYA 72

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             +FSQI NPN+F++N L+R +S    P +A   YT ML K  + P+N TFPF++ +   
Sbjct: 73  YGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASTE 131

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           +     G Q H  I++FG + D+++ N+L+H Y+  G I  A ++F     RD+VS+ ++
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191

Query: 182 INGYAQ-----------------------------VKEPC--PALWLFRKMQDSCIQPDA 210
           + GY +                              K  C   A+ LF  M+   +  + 
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANE 251

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
              V++ S+C  L     G++ H  V K+   V  N++L TA+++MY +CG +  A RVF
Sbjct: 252 TVMVSVISSCAHLGALEFGERAHEYVVKSHMTV--NLILGTALVDMYWRCGEIEKAIRVF 309

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             +   K + +WSS+I G    G   +A   F QM +                       
Sbjct: 310 EELP-DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVR----------------------- 345

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
                   LG  P ++T+ AVL AC   G +D G  +++    +      +     ++DM
Sbjct: 346 --------LGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDM 397

Query: 391 YAKCGSIDTALSVFYKIP 408
             + G +  A +   K+P
Sbjct: 398 LGRAGKLAEAENFILKMP 415


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 392/625 (62%), Gaps = 13/625 (2%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSR 62
           ++++ + LL+LLE+C S+ +  +IH Q++ +GL +   + S+L++F A+S  +N  +  +
Sbjct: 50  VLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK 109

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           IL +   N N F WN  +RGY  S++P  A++LY +ML KG   P+N+T+P +   CA  
Sbjct: 110 IL-NNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S   +  +I  H+I+ G + DLF+ NA+IH     G +  A K+F+ S  RDLVS+N++I
Sbjct: 169 SLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSII 228

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           NGY +      A  L+ KM +  + PD  T + + SA  +L +  +G++ H  + +    
Sbjct: 229 NGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE---- 284

Query: 243 VGSNML--LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           +G N+   L  A+++MY KC  +  A+ +F  M   K+  +W++M+ GY + G +E A +
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENM-TKKTVVSWTTMVIGYAKFGLLESAVR 343

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF++M ++D+V W A+I G+ Q     +AL LF +M++  + PD++T+V  L AC  LGA
Sbjct: 344 LFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGA 403

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G  +H  Y++      N+ L TA++DMYAKCG+I  A+ VF ++P   +    + +I
Sbjct: 404 LDVGIWMHH-YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG--RNSLTWTAI 460

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I GLA HG    +I+ F EM  +GL PD +TF+ VL AC HGGLV++G+ +F  M + YG
Sbjct: 461 ICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYG 520

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I P+++HY C+VDLL R G L+EA  LI+SMP++ ++V+W AL    R+H N  +GE A 
Sbjct: 521 ISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAA 580

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
            KLL+L+P  G  YVLL+NM  +   WE+AR+VRK+M++ G++K PG S IE NG ++ F
Sbjct: 581 SKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDF 640

Query: 600 LASKKSHPQTKEIELMLKDMTMKLK 624
           +   KSHPQ+++I   L  +T +++
Sbjct: 641 IIRDKSHPQSEKIYECLTRLTRQIE 665


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/782 (33%), Positives = 424/782 (54%), Gaps = 73/782 (9%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRI 63
           ++  ++ L L +   S+    Q H QIV  G  + IS  ++L    +  G    ++ +R 
Sbjct: 17  LISKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLG---AIYYARD 73

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +  P++F++N LMRG+S ++SP  +L ++  +     + PN+ T+ F +++ +   
Sbjct: 74  IFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFR 133

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             ++GC IH   I  G + +L + + ++  Y  F  + +A KVF+    +D + +NT+I+
Sbjct: 134 DDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193

Query: 184 GYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV------- 235
           GY + +    ++ +FR +  +SC + D  T + +  A  EL + R+G Q H++       
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253

Query: 236 -----------VYKNLGCVG-----------SNMLLKTAVINMYAKCGLMNMAERVFSTM 273
                      +Y   G +             +++   A+I+ Y   G   ++  +F  +
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 274 GMSKS-----------------------------------TAAWSSMISGYTREGKIERA 298
            +S +                                   T+  +++ + Y++  +IE A
Sbjct: 314 MLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESA 373

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R+LFD+  ++ L SW AMISGY+Q G    A+ LF +M++    P+ VT+  +L AC  L
Sbjct: 374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQL 433

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GAL  GK +H   + +  F  +I+++TA+I MYAKCGSI  A  +F  +PK  K    +N
Sbjct: 434 GALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPK--KNEVTWN 490

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
           ++ISG   HG G+ ++ +F EM   G+ P  VTF+ VL ACSH GLV+EG + F SM++ 
Sbjct: 491 TMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           YG +P ++HY C+VD+L R G L  A   I++MP      +W  LL ACR+H++  +   
Sbjct: 551 YGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLART 610

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             +KL +L+PD+  ++VLLSN+ +    + +A  VR+      + K PG++ IE   T H
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F +  +SHPQ K I   L+ +  K++ AGY P T   + DV+EEE+E +V  HSE+LA+
Sbjct: 671 VFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAI 730

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI +     IRI KNLR+C DCH A KL+S+I  R I+VRDA RFH FK G CSC D
Sbjct: 731 AFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGD 790

Query: 718 FW 719
           +W
Sbjct: 791 YW 792


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/714 (37%), Positives = 408/714 (57%), Gaps = 45/714 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
            S+ LA  E+   L++  +IHG  +   ++  I  ++ L+  +A  G      +++ LF  
Sbjct: 334  SAFLAAAETI-DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETE---KAKQLFWG 389

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            +   ++  W+ ++    ++  P+EAL L+  M ++ +  PN  T   +L +CA LS  K 
Sbjct: 390  LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM-KPNRVTLMSILPACADLSLLKL 448

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            G  IHC  +K  ++ DL    AL+  Y+  G+   A   F    +RD+V++N+LINGYAQ
Sbjct: 449  GKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ 508

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            + +P  A+ +F K++ S I PDA T V +  AC  LND   G   H ++ K LG   S+ 
Sbjct: 509  IGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK-LG-FESDC 566

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD- 306
             +K A+I+MYAKCG +  AE                                 LF++ D 
Sbjct: 567  HVKNALIDMYAKCGSLPSAEF--------------------------------LFNKTDF 594

Query: 307  QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             +D V+W  +I+ Y Q G   +A+  F +M     HP+ VT V+VL A   L A   G  
Sbjct: 595  TKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 654

Query: 367  LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             H   I+ + F  N  +  ++IDMYAKCG +  +  +F ++     TVS +N+++SG A 
Sbjct: 655  FHACIIQ-MGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHK-DTVS-WNAMLSGYAV 711

Query: 427  HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
            HG G+ +IA+F  M+   ++ D V+FV+VL AC H GLVEEG++ F SM + Y IKP +E
Sbjct: 712  HGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLE 771

Query: 486  HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            HY CMVDLL R G  DE  G I+ MP + ++ +W ALL +CR+H N K+GE+A   L+ L
Sbjct: 772  HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 831

Query: 546  EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            EP + AH+V+LS++ A++ RW +A + R  M+D G++K PG S++E    +H F    KS
Sbjct: 832  EPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKS 891

Query: 606  HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            HPQ + + L+   +  K++  GYVP+   V+ +V+EE+KE  +  HSE+LA+ F L+N+ 
Sbjct: 892  HPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTP 951

Query: 666  SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               TI+I KNLR+C DCH   K +S+I  R I+VRDA RFH F+ G CSC D+W
Sbjct: 952  PGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 174/622 (27%), Positives = 294/622 (47%), Gaps = 85/622 (13%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           LL SCK L   LQIH QI+ SG  HH S + LI+ ++L   K  L RS  +F    NP+ 
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH-KCDLARS--VFDSTPNPSR 94

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            +WN+++R Y+RS    EAL +Y  M+ KG+  P+ +TF FVL +C    + + G   H 
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGL-EPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            I + GLE D+FI   L+  YS  G +  A +VF+    RD+V++N +I G +Q ++PC 
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY-KNLGCVGSNMLLKTA 252
           A+  FR MQ   ++P + + + +F    +L++  + +  H  V+ ++     SN L    
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGL---- 269

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM------- 305
            I++Y+KCG +++A RVF  M + +   +W +M++GY   G      +LFD+M       
Sbjct: 270 -IDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI 327

Query: 306 -----------------------------DQR---DLVSWTAMISGYSQVGGFSQALELF 333
                                         QR   D++  T ++  Y++ G   +A +LF
Sbjct: 328 NKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 334 -------------------------------GKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                           +M++  + P+ VT++++L AC  L  L 
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK +H  +        ++   TA++ MYAKCG    AL+ F ++    + +  +NS+I+
Sbjct: 448 LGKSIH-CFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS--RDIVTWNSLIN 504

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
           G AQ G    +I +F ++ L  + PD  T V V+ AC+    +++G      ++  G + 
Sbjct: 505 GYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFES 564

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
                  ++D+ A+ G L  A  L     +  + V W  ++AA   + +AK   I+    
Sbjct: 565 DCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQ 623

Query: 543 LDLEPDHGAHYVLLSNMLAETY 564
           + LE  H      +S + A  Y
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAY 645


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 400/716 (55%), Gaps = 39/716 (5%)

Query: 6   LEHS-SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           LEH+  LL +    K+LK    IH  ++ +      +  Q+ S   L    + +  +RIL
Sbjct: 25  LEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARIL 84

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +   N+  W  LM GY  +    E L L+ +M+S   + PN + F  +++SC+    
Sbjct: 85  FDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQ 144

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G Q H + +K GL F  +++NALI  YS    +  A  V+      D+ SYN +ING
Sbjct: 145 VVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIING 204

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
             +   P  AL +  +M D CI  D  T+V  F  C+ L D R+G Q H  +++      
Sbjct: 205 LLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYD 264

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S   + +A+I+MY KCG                                 I  AR++F++
Sbjct: 265 S--FVSSAIIDMYGKCG--------------------------------NILNARKVFNR 290

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  +++VSWTA+++ YSQ G F +AL  F +ME  G+ P+E T   +L +C G+ AL  G
Sbjct: 291 LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHG 350

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K LH + I+   F  +I +  A+I+MY+K GSI+ A  VF ++    +    ++++I GL
Sbjct: 351 KLLHTR-IKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMI--CRDSITWSAMICGL 407

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           + HGLG  ++ VF+EM      P  VTFV VL AC+H G V+EG  +   ++   GI+P 
Sbjct: 408 SHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPG 467

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EHY C+V LL + GRLDEA   ++S P   + V WR LL+AC +H+N  +G+   + +L
Sbjct: 468 VEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVL 527

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            ++P     Y+LLSNM A+  RW+   ++RKLM +  ++K PG S+IE   ++H F++  
Sbjct: 528 QMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEG 587

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           K+HP++ +I   ++++   ++  GYVP+   V  DV++E+K   VSYHSEKLA+A+GL+ 
Sbjct: 588 KTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMK 647

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + S   IR+ KNLR+C DCH A KL+S++  R I+VRDA RFH F  G CSC D+W
Sbjct: 648 TPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYI-ENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           HP E T + +L+       L FGK +H   I  N     NI    ++I++YAKC  I  A
Sbjct: 23  HPLEHT-IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVA 81

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCAC 459
             +F  + K  + V  + ++++G   +GL    + +F+ M  +  ++P+   F T++ +C
Sbjct: 82  RILFDGMRK--RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSC 139

Query: 460 SHGGLVEEGKQFFESMLNYGI 480
           S  G V EG Q     L  G+
Sbjct: 140 SDSGQVVEGWQCHGYALKSGL 160


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 412/711 (57%), Gaps = 53/711 (7%)

Query: 51  LSG-CKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN 108
           LSG  K G L ++  +F  I   +   W T++ GY++    ++A+ ++  M+ K  V P 
Sbjct: 48  LSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMV-KDKVLPT 106

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
            FT   VL SCA   S   G ++H  ++K GL   + + N+L++ Y+  G +  A  VF+
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166

Query: 169 G------------------------SLA-------RDLVSYNTLINGYAQVKEPCPALWL 197
                                    +LA       RD+VS+N++I G  Q      AL  
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQF 226

Query: 198 FRK-MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL----GCVGSNMLLKTA 252
           F   ++D+ ++PD F+  +  SAC  L     GKQ H  + + +    G VG+      A
Sbjct: 227 FSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN------A 280

Query: 253 VINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           +I+MYAK G + +A R+    G+S     A++++++GY + G I  ARQ+F+ +   D+V
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVV 340

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           +WTAMI GY Q G  + A+E+F  M S G  P+  T+ A+L A   + +L+ GK++H   
Sbjct: 341 AWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA 400

Query: 372 IENVVFGRNIF--LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
           I +   G  +   +  A+  MYAK GSI+ A  VF  + +N  TVS + S+I  LAQHGL
Sbjct: 401 IRS---GEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVS-WTSMIMALAQHGL 456

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
           GE +I +F +M  +G+KPD +T+V VL AC+HGGLVE+G+ +F+ M N + I P + HY 
Sbjct: 457 GEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYA 516

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDL  R G L EAY  +++MP + + + W +LL++C++++N  + ++A ++LL +EP+
Sbjct: 517 CMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPN 576

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +   Y  L+N+ +   +W++A ++RKLM   G++K  G S+++     H F      HPQ
Sbjct: 577 NSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQ 636

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
             EI  M+  +  ++K  G+ P+T  V+ D++ E K+ ++ YHSEKLA+AFG+I++    
Sbjct: 637 KDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENT 696

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           T+RI KNLR+C DCH A K +S++  REI+VRDA RFH FK G+CSC D+W
Sbjct: 697 TLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 219/453 (48%), Gaps = 50/453 (11%)

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F  N ++  Y+  G +  AH+VF+    RD VS+ T+I GY Q+     A+ +F  M   
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD 101

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG---CVGSNMLLKTAVINMYAKCG 261
            + P  FT   + ++C       IGK+ H+ V K LG   CV     +  +++NMYAK G
Sbjct: 102 KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVK-LGLHACVP----VANSLLNMYAKTG 156

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            + MA+ VF  M + ++T++W++MIS +   G+++ A   F+ + +RD+VSW +MI+G +
Sbjct: 157 DLKMAKVVFDRMKL-RNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCN 215

Query: 322 QVGGFSQALELFGK-MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           Q G  ++AL+ F   ++   + PD  ++ + L AC  L  L FGK++H  YI   +F  +
Sbjct: 216 QHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIH-GYIVRTMFDAS 274

Query: 381 IFLTTAVIDMYAKCGSIDTA--------------------LSVFYKIPKNLKTVSLFNSI 420
             +  A+I MYAK G ++ A                    L+ + K+        +FNS+
Sbjct: 275 GAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSL 334

Query: 421 -----------ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
                      I G  Q+GL   +I VF+ M   G +P+  T   +L A S    +  GK
Sbjct: 335 KDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGK 394

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           Q   S +  G          +  + A+ G ++ A  +   +  + ++V W +++ A   H
Sbjct: 395 QIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454

Query: 530 RNAKIGEIAGQKL-----LDLEPDHGAHYVLLS 557
               +GE A +       L ++PDH  +  +LS
Sbjct: 455 ---GLGEEAIELFEQMLTLGIKPDHITYVGVLS 484



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 154/280 (55%), Gaps = 12/280 (4%)

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L   ++N+YAK G    A  +F+ M + K+T +W++++SGY ++GK+E+A Q+FD +  R
Sbjct: 12  LMNNLMNLYAKTGFHLDAHDLFNEMPV-KTTFSWNTILSGYAKQGKLEKAHQVFDLIPVR 70

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D VSWT +I GY+Q+G F  A+++F  M    + P + T+  VL +C   G+   GK++H
Sbjct: 71  DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVH 130

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             ++  +     + +  ++++MYAK G +  A  VF ++   L+  S +N++IS     G
Sbjct: 131 -SFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRM--KLRNTSSWNAMISLHMNCG 187

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHY 487
             + ++A F   EL+  + D V++ +++  C+  G   E  QFF S+L +  +KP     
Sbjct: 188 RVDLALAQF---ELLSER-DIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSL 243

Query: 488 GCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRALLA 524
              +   A   +L    + +G I    +DA+  +  AL++
Sbjct: 244 ASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALIS 283


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/644 (38%), Positives = 377/644 (58%), Gaps = 40/644 (6%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N L+ G+  +++  +   +   +L +G   PN +TF  +L +CA       G  IH  +I
Sbjct: 160 NNLLSGFCDTETCDQGPRILIQLLVEGF-EPNMYTFISILKTCASKGDLNEGKAIHGQVI 218

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G+  D  + N+L++ Y+  G  N A KVF     RD+VS+  LI G+   +     L 
Sbjct: 219 KSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV-AEGYGSGLR 277

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           +F +M      P+ +TF+++  +C+ L+D  +GKQ HA + KN   +  N  + TA+++M
Sbjct: 278 IFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN--SLDGNDFVGTALVDM 335

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           YAK   +                                E A  +F+++ +RDL +WT +
Sbjct: 336 YAKNRFL--------------------------------EDAETIFNRLIKRDLFAWTVI 363

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           ++GY+Q G   +A++ F +M+  G+ P+E T+ + L  C  +  LD G++LH   I+   
Sbjct: 364 VAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQ 423

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
            G ++F+ +A++DMYAKCG ++ A  VF  +     TVS +N+II G +QHG G  ++  
Sbjct: 424 SG-DMFVASALVDMYAKCGCVEDAEVVFDGLVSR-DTVS-WNTIICGYSQHGQGGKALKA 480

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F  M   G  PD VTF+ VL ACSH GL+EEGK+ F S+   YGI P +EHY CMVD+L 
Sbjct: 481 FEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILG 540

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G+  E    I+ M   +N +IW  +L AC++H N + GE A  KL +LEP+  ++Y+L
Sbjct: 541 RAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYIL 600

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSNM A    W++   VR LM   G++K PG S++E NG +H FL+   SHP+ +EI L 
Sbjct: 601 LSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLK 660

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+D+  KL S GY PNT  V+ +V + EK+ ++ YHSE+LALAF L+++ +++TIRI KN
Sbjct: 661 LQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKN 720

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LRICGDCH   K +SEI  +E++VRD   FH FK G+CSC +FW
Sbjct: 721 LRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 148/292 (50%), Gaps = 11/292 (3%)

Query: 10  SLLALLESCKSLKQ---ALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFR-SRIL 64
           + +++L SC SL       Q+H QIV + L+ +    + L+  +A    KN     +  +
Sbjct: 293 TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYA----KNRFLEDAETI 348

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F+++   ++F W  ++ GY++    ++A+  +  M  +G V PN FT    L+ C+R+++
Sbjct: 349 FNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG-VKPNEFTLASSLSGCSRIAT 407

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             SG Q+H   IK G   D+F+ +AL+  Y+  G + +A  VF+G ++RD VS+NT+I G
Sbjct: 408 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 467

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y+Q  +   AL  F  M D    PD  TF+ + SAC+ +     GK+    + K  G + 
Sbjct: 468 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG-IT 526

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
             +     ++++  + G  +  E     M ++ +   W +++      G IE
Sbjct: 527 PTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 578



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 121/252 (48%), Gaps = 4/252 (1%)

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           G+   +  WSS+++ Y +   ++ ARQ+ ++M  +D+  W   +S  +      +A++LF
Sbjct: 19  GICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLF 78

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M    I  ++    +++ A   LG   +G+ +H   +    F  +I ++ A + MY K
Sbjct: 79  YLMRHTRIRLNQFIFASLISAAASLGDNHYGESIH-ACVCKYGFESDILISNAFVTMYMK 137

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
             S++     F  +   ++ ++  N+++SG       +    +  ++ + G +P+  TF+
Sbjct: 138 TQSVENGWQFFKAMM--IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           ++L  C+  G + EGK     ++  GI P    +  +V++ A+ G  + A  +   +P +
Sbjct: 196 SILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-E 254

Query: 514 ANSVIWRALLAA 525
            + V W AL+  
Sbjct: 255 RDVVSWTALITG 266


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/787 (34%), Positives = 430/787 (54%), Gaps = 85/787 (10%)

Query: 10  SLLALLESCKSLKQ-----------ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG 57
           SL  LLE C +L Q           A  +H +++ SGL   +   + L++ ++ +G    
Sbjct: 8   SLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYA-- 65

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRS---DS--------PQEALVLYTSML------ 100
              +R LF ++     F WNT++  Y++    DS        PQ   V +T+M+      
Sbjct: 66  -LHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNI 124

Query: 101 ---SKGI----------VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
               K I          + P+ FT   VL S A     ++G ++H  I+K GL  ++ + 
Sbjct: 125 GQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVS 184

Query: 148 NALIHFYS----------IF---------------------GYINNAHKVFEGSLARDLV 176
           N+L++ Y+          +F                     G ++ A   FE    RD+V
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 177 SYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA- 234
           ++N++I+GY Q      AL +F KM +DS + PD FT  ++ SAC  L    IG+Q H+ 
Sbjct: 245 TWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSH 304

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREG 293
           +V       G   ++  A+I+MY++CG +  A R+    G        +++++ GY + G
Sbjct: 305 IVTTGFDISG---IVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
            +  A+ +FD +  RD+V+WTAMI GY Q G + +A+ LF  M      P+  T+ A+L 
Sbjct: 362 DMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLS 421

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
               L +L  GK++H   +++     ++ ++ A+I MYAK GSI +A   F  I     T
Sbjct: 422 VASSLASLGHGKQIHGSAVKSGEI-YSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           VS + S+I  LAQHG  E ++ +F  M + GL+PD +T+V V  AC+H GLV +G+Q+F+
Sbjct: 481 VS-WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539

Query: 474 SMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M +   I P + HY CMVDL  R G L EA   I+ MP + + V W +LL+ACR+++N 
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNI 599

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
            +G++A ++LL LEP++   Y  L+N+ +   +WEEA ++RK M D  ++K  G+S+IE 
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV 659

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F      HPQ  EI + +K +  ++K  GYVP+T  V+ D++EE KE ++ +HS
Sbjct: 660 KHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHS 719

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFGLI++  K T+RI KNLR+C DCH A K +S++  REI+VRD  RFH FK G 
Sbjct: 720 EKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGF 779

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 780 CSCRDYW 786



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 163/342 (47%), Gaps = 48/342 (14%)

Query: 208 PDAFTFVAMFSACTELNDPRIGKQ--------FHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           P   +   +   CT L    + K          H  V K+ G V S  L+   ++N+Y+K
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKS-GLVFSVYLMNN-LMNVYSK 61

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
            G    A ++F  M + ++  +W++++S Y + G ++ + + FD++ QRD VSWT MI G
Sbjct: 62  TGYALHARKLFDEMPL-RTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVG 120

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           Y  +G + +A+ + G+M   GI P + T+  VL +      L+ GK++H  +I  +    
Sbjct: 121 YKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVH-SFIVKLGLRG 179

Query: 380 NIFLTTAVIDMYAKCGS-------------------------------IDTALSVFYKIP 408
           N+ ++ ++++MYAKCG                                +D A++ F ++ 
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMA 239

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREM--ELMGLKPDGVTFVTVLCACSHGGLVE 466
           +  + +  +NS+ISG  Q G    ++ +F +M  + M L PD  T  +VL AC++   + 
Sbjct: 240 E--RDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSM-LSPDRFTLASVLSACANLEKLC 296

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            G+Q    ++  G          ++ + +R G ++ A  LI+
Sbjct: 297 IGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/713 (36%), Positives = 407/713 (57%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +++L LL S +  +    +HG ++  G  ++    + LI  +++SGC +    +R +F +
Sbjct: 50  TTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVS---MAREVFDE 106

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I + ++  W  ++  Y+ +D   EAL  ++ M   G   PNNFTF  VL +C  L +F +
Sbjct: 107 ISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGF-KPNNFTFAGVLKACLGLQNFDA 165

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +HC ++K   E DL++   L+  Y+  G  ++A + F      D++ ++ +I+ +AQ
Sbjct: 166 GKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQ 225

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL +F +M+ + + P+ FTF ++  A  ++    + K  H    K    + +++
Sbjct: 226 SGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALK--AGLSTDV 283

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A++  YAKCG                                 IE++ +LF+ +  
Sbjct: 284 FVSNALMACYAKCGC--------------------------------IEQSMELFEALSD 311

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R+ VSW  +I  Y Q+G   +AL LF  M    +   EVT  ++LRAC  L AL+ G ++
Sbjct: 312 RNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQV 371

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H       ++G+++ +  A+IDMYAKCGSI  A  +F  +  +L+    +N+II G + H
Sbjct: 372 HC-LTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDML--DLRDKVSWNAIICGYSMH 428

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           GLG  +I +F  M+    KPD +TFV VL ACS+ G ++EGKQ+F SM  +YGI+P MEH
Sbjct: 429 GLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEH 488

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMV L+ R G LD+A   I+ +P++ + +IWRALL AC +H + ++G I+ Q++L+LE
Sbjct: 489 YTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELE 548

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A +VLLSN+ A   RW     VRK M   G++K PG S+IE+ G +H F  +  SH
Sbjct: 549 PRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSH 608

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
              K I  ML+ + MK + AGY P    V+ DV+++EKE ++  HSE+LALAFGL+   +
Sbjct: 609 ADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPA 668

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IRI KNLRIC DCH   KL+S+I  R+I+VRD  RFH F+ G+CSC D+W
Sbjct: 669 GCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           + +SS+L    +  +L+  LQ+H     +     ++  + LI  +A  G    +  +R +
Sbjct: 350 VTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCG---SIKDARFM 406

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +D  +   WN ++ GYS      EA+ ++ +++ +    P+  TF  VL++C+    
Sbjct: 407 FDMLDLRDKVSWNAIICGYSMHGLGVEAIKMF-NLMKETKCKPDELTFVGVLSACSNTGR 465

Query: 125 FKSGCQ 130
              G Q
Sbjct: 466 LDEGKQ 471


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 391/666 (58%), Gaps = 48/666 (7%)

Query: 64   LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
             +  +D  N+  WN+++   +R     EAL  ++S+   G++ P   +FP  + SC+ L 
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLI-PTRSSFPCTIKSCSALC 2029

Query: 124  SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               SG   H     FG E DLF+ +ALI  YS  G + +A  +F+    R++VS+ ++I 
Sbjct: 2030 DLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 2089

Query: 184  GYAQVKEPCPALWLFR-------KMQDSCIQP-DAFTFVAMFSACTELNDPRIGKQFHAV 235
            GY Q ++   AL LF+       +++D    P D+   V++ SAC+ ++   I +  H  
Sbjct: 2090 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 2149

Query: 236  VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            V K  G  GS + +   +++ YAKCG   ++++VF  M   K   +W+SMI+ Y + G  
Sbjct: 2150 VVKK-GFDGS-IGVGNTLMDAYAKCGQPLVSKKVFDWME-EKDDISWNSMIAVYAQSG-- 2204

Query: 296  ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF-GKMESLGIHPDEVTMVAVLRA 354
                                 +SG        +ALE+F G +  +G+  + VT+ AVL A
Sbjct: 2205 ---------------------LSG--------EALEVFHGMVRHVGVRYNAVTLSAVLLA 2235

Query: 355  CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
            C   GAL  GK +H Q I+ +    N+ + T++IDMY KCG ++ A   F ++ +  K V
Sbjct: 2236 CAHAGALRAGKCIHDQVIK-MDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE--KNV 2292

Query: 415  SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
              + ++++G   HG  + ++ +F +M   G+KP+ +TFV+VL ACSH GLVEEG  +F +
Sbjct: 2293 KSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNA 2352

Query: 475  MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            M + Y I+P +EHYGCMVDL  R G L+EAY LI+ M    + V+W +LL ACR+H+N  
Sbjct: 2353 MKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVD 2412

Query: 534  IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
            +GEIA QKL +L+PD+  +YVLLSN+ A+  RW +  ++R LM +  + KPPG+S +E  
Sbjct: 2413 LGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 2472

Query: 594  GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
            G +H FL   K HP  + I   L+ +T++L+  GYVPN   V+ DVDEEEKE ++  HSE
Sbjct: 2473 GRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSE 2532

Query: 654  KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
            KLA+AFG++NS    TI I KNLR+CGDCH   KL+S++  R+ +VRD+ RFH FK G C
Sbjct: 2533 KLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVC 2592

Query: 714  SCMDFW 719
            SC D+W
Sbjct: 2593 SCGDYW 2598



 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/409 (37%), Positives = 237/409 (57%), Gaps = 20/409 (4%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-----E 168
           F+L +C    +FK   QIH  II+ GL  D  +   LIH YS  G I  A  +F      
Sbjct: 32  FLLQNC---KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
            +   +L+     ING ++      AL L++ M    I  D FTF  +  ACT      +
Sbjct: 89  CTFTWNLIIRANTINGLSE-----QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDL 143

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           GK  H  + K  G  G ++ ++  +I+ Y KCG    A +VF  M + ++  +W+++ISG
Sbjct: 144 GKVVHGSLIK-YGFSG-DVFVQNNLIDFYFKCGHTRFALKVFEKMRV-RNVVSWTTVISG 200

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
               G ++ AR++FD++  +++VSWTAMI+GY +     +ALELF +M++  I P+E TM
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V++++AC  +G L  G+ +H   I+N +    ++L TA+IDMY+KCGSI  A+ VF  +P
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCI-EIGVYLGTALIDMYSKCGSIKDAIEVFETMP 319

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  K++  +NS+I+ L  HGLG+ ++ +F EME + +KPD +TF+ VLCAC H   V+EG
Sbjct: 320 R--KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377

Query: 469 KQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
             +F  M  +YGI P  EHY CM +L AR   LDEA+   + +   ANS
Sbjct: 378 CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANS 426



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 197/396 (49%), Gaps = 74/396 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L LL++CK+ K   QIH +I+ SGL N  + + +LI  ++  G    +  + +LF QI N
Sbjct: 31  LFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG---RIAYAILLFYQIQN 87

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P  F WN ++R  + +   ++AL+LY +M+ +GI + + FTFPFV+ +C    S   G  
Sbjct: 88  PCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA-DKFTFPFVIKACTNFLSIDLGKV 146

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT---------- 180
           +H  +IK+G   D+F++N LI FY   G+   A KVFE    R++VS+ T          
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 181 ---------------------LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                                +INGY + ++P  AL LF++MQ   I P+ +T V++  A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CTE+    +G+  H    KN  C+   + L TA+I+MY+KCG +  A  VF TM   KS 
Sbjct: 267 CTEMGILTLGRGIHDYAIKN--CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSL 323

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
             W+SMI+                          +  + G  Q     +AL LF +ME +
Sbjct: 324 PTWNSMIT--------------------------SLGVHGLGQ-----EALNLFSEMERV 352

Query: 340 GIHPDEVTMVAVLRACVGLGALDFG----KRLHQQY 371
            + PD +T + VL ACV +  +  G     R+ Q Y
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHY 388



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 21/271 (7%)

Query: 27   IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
            +HG +V  G +  I     +   A + C   L  S+ +F  ++  +   WN+++  Y++S
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTL-MDAYAKCGQPLV-SKKVFDWMEEKDDISWNSMIAVYAQS 2203

Query: 87   DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
                EAL ++  M+    V  N  T   VL +CA   + ++G  IH  +IK  LE+++ +
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263

Query: 147  RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
              ++I  Y   G +  A K F+    +++ S+  ++ GY        AL +F KM  + +
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 207  QPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYK--------NLGCVGSNMLLKTAVINMY 257
            +P+  TFV++ +AC+       G   F+A+ +K        + GC          +++++
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC----------MVDLF 2373

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
             + G +N A  +   M M      W S++  
Sbjct: 2374 GRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 176/392 (44%), Gaps = 67/392 (17%)

Query: 291  REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
            RE     A   +  +D+ ++ SW ++I+  ++ G   +AL  F  +  LG+ P   +   
Sbjct: 1961 REDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPC 2020

Query: 351  VLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             +++C  L  L  G+  HQQ     VFG   ++F+++A+IDMY+KCG +  A ++F +IP
Sbjct: 2021 TIKSCSALCDLVSGRMSHQQAF---VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 2077

Query: 409  KNLKTVSLFNSIISGLAQHGLGETSIAVFR-------EMELMGLKP-DGVTFVTVLCACS 460
              L+ V  + S+I+G  Q+   + ++ +F+       E+E     P D V  V+VL ACS
Sbjct: 2078 --LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135

Query: 461  -----------HGGLVEEG---------------KQFFESMLNYGIKPQMEH-----YGC 489
                       HG +V++G                +  + +++  +   ME      +  
Sbjct: 2136 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 2195

Query: 490  MVDLLARDGRLDEA----YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            M+ + A+ G   EA    +G+++ +    N+V   A+L AC      + G+    +++ +
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255

Query: 546  EPDHGAHY-VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
            + ++       + +M  +  R E A++    M +  ++    W+ +         +A   
Sbjct: 2256 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK---SWTAM---------VAGYG 2303

Query: 605  SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
             H + KE      D+  K+  AG  PN +  V
Sbjct: 2304 MHGRAKEA----LDIFYKMVRAGVKPNYITFV 2331


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/783 (34%), Positives = 420/783 (53%), Gaps = 80/783 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           + S+L L    KS++   ++   I  SG +   I   +L+  +   G    L   R++F 
Sbjct: 153 YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCG---DLKEGRMVFD 209

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++    IF+WN ++  YS S +  E++ L+  ML  GI  PN++TF  +L   A ++  +
Sbjct: 210 KLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGI-KPNSYTFSSILKCFAAVARVE 268

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H  I K G      + N+LI FY +   +  A K+F+    RD++S+N++I+GY 
Sbjct: 269 EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +       + +F KM    +  D  T V +F AC  +    +GK  H+   K    +   
Sbjct: 329 KNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIK-AATLDRE 387

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +     +++MY+KCG +N A RVF  M   K+  +W+SMI+GY REG  + A +LFD+M 
Sbjct: 388 VRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446

Query: 307 QR----DLVSWTAMISG-----------------------------------YSQVGGFS 327
            R    D+ + T++++                                    Y++ G   
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506

Query: 328 QALELFGKMESLGI------------------------------HPDEVTMVAVLRACVG 357
            A ++F  M+   +                               PD  T+  +L AC  
Sbjct: 507 DAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACAS 566

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L ALD G+ +H   + N  +  + ++T AV+DMY KCG +  A S+F  IP   K +  +
Sbjct: 567 LAALDKGREIHGYALRN-GYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPN--KDLVSW 623

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
             +I+G   HG G  +I  F +M + G++PD V+F+++L ACSH GL++EG + F  M  
Sbjct: 624 TVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKK 683

Query: 478 Y-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
              I+P +EHY CMVDLLAR G L +A+  I++MP   ++ IW ALL  CR+H + K+ E
Sbjct: 684 ECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAE 743

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
              +++ +LEP++  +YVLL+N+ AE  +WEE +++RK +   G++K PG S+IE  G +
Sbjct: 744 KVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKI 803

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           + F+A   S PQ K+IEL+LK +  K+K  GY P T   + + DE EKE  +  HSEKLA
Sbjct: 804 NIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLA 863

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFG++N    +TIR+TKNLR+CGDCH   K +S+   REI++RD+ RFH FK G+CSC 
Sbjct: 864 MAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCR 923

Query: 717 DFW 719
            +W
Sbjct: 924 GYW 926



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I  + +VG    A+EL     S   + D     ++L+ C    ++  G+R+ +  IE+  
Sbjct: 124 IVEFCEVGDLKNAMELL--CSSQNSNFDLGAYCSILQLCAERKSIRDGRRV-RSIIESSG 180

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
              +  L   ++ MY KCG +     VF K+ ++   + L+N +IS  +  G    SI +
Sbjct: 181 VMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES--KIFLWNLMISEYSGSGNYGESINL 238

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           F++M  +G+KP+  TF ++L   +    VEEG+Q
Sbjct: 239 FKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/714 (35%), Positives = 403/714 (56%), Gaps = 48/714 (6%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           + +L+ C   K L  A Q+H  I+ S +  N H+ ++ L  +         L  +R +F 
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGR----LQEARCVFD 87

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +   WN ++ GY      ++A+ L+  M  +G V PN  T+  +L +CA LS+ K
Sbjct: 88  ALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEG-VQPNAGTYMIILKACASLSALK 146

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++H  I   GLE D+ +  AL+  Y   G IN A ++F+  +  D++S+  +I  YA
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A  L  +M+    +P+A T+V++ +AC      +  K+ H             
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVH------------- 253

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                                R     G+       ++++  Y + G I+ AR +FD+M 
Sbjct: 254 ---------------------RHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            RD+VSW  MI  +++ G   +A +LF +M++ G  PD +  +++L AC   GAL++ K+
Sbjct: 293 VRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK 352

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H+  +++     ++ + TA++ MY+K GSID A  VF ++   ++ V  +N++ISGLAQ
Sbjct: 353 IHRHALDSG-LEVDVRVGTALVHMYSKSGSIDDARVVFDRM--KVRNVVSWNAMISGLAQ 409

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           HGLG+ ++ VFR M   G+KPD VTFV VL ACSH GLV+EG+  + +M   YGI+P + 
Sbjct: 410 HGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVS 469

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           H  CMVDLL R GRL EA   I +M  D +   W ALL +CR + N ++GE+  ++ L L
Sbjct: 470 HCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKL 529

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +P + A YVLLSN+ AE  +W+    VR +M + GI+K PG S+IE +  +H FL +  S
Sbjct: 530 DPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSS 589

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP+ KEI      +  K+K+ GY+P+T  V+ + + ++KE  +  HSEKLA+ +GL+++ 
Sbjct: 590 HPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTP 649

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IR+ KNLR+C DCH A KL+S++  REI+VRDA RFH FK G CSC D+W
Sbjct: 650 PGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/629 (40%), Positives = 373/629 (59%), Gaps = 30/629 (4%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY----INNAHKVF 167
           FP + N+C  +       QIH   IK G   D      ++ F +        ++ AHK+F
Sbjct: 27  FPQI-NNCRTIRDLS---QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCP--ALWLFRKM-QDSCIQPDAFTFVAMFSACTELN 224
                R+  S+NT+I G+++  E     A+ LF +M  D  ++P+ FTF ++  AC +  
Sbjct: 83  NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA--- 281
             + GKQ H +  K     G +  + + ++ MY  CG M  A  +F    + K       
Sbjct: 143 KIQEGKQIHGLALKY--GFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTD 200

Query: 282 ----------WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                     W+ MI GY R G  + AR LFD+M QR +VSW  MISGYS  G F  A+E
Sbjct: 201 RRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE 260

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           +F +M+   I P+ VT+V+VL A   LG+L+ G+ LH  Y E+     +  L +A+IDMY
Sbjct: 261 VFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL-YAEDSGIRIDDVLGSALIDMY 319

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           +KCG I+ A+ VF ++P+  + V  ++++I+G A HG    +I  F +M   G++P  V 
Sbjct: 320 SKCGIIEKAIHVFERLPR--ENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           ++ +L ACSHGGLVEEG+++F  M++  G++P++EHYGCMVDLL R G LDEA   I +M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P   + VIW+ALL ACR+  N ++G+     L+D+ P     YV LSNM A    W E  
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           ++R  M +  I+K PG S I+ +G LH F+    SHP+ KEI  ML +++ KL+ AGY P
Sbjct: 498 EMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRP 557

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
            T QV+ +++EE+KE V+ YHSEK+A AFGLI++   + IRI KNLRIC DCH + KL+S
Sbjct: 558 ITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLIS 617

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++Y+R+I VRD  RFH F+ G+CSCMD+W
Sbjct: 618 KVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 218/509 (42%), Gaps = 119/509 (23%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKN-GLFRSRILFSQI 68
           L   + +C++++   QIH   + SG +   +++++++ F A S   +  L  +  +F+Q+
Sbjct: 26  LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 85

Query: 69  DNPNIFIWNTLMRGYSRSDSPQE--ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
              N F WNT++RG+S SD  +   A+ L+  M+S   V PN FTFP VL +CA+    +
Sbjct: 86  PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF------------------E 168
            G QIH   +K+G   D F+ + L+  Y + G++ +A  +F                  +
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205

Query: 169 GSLA---------------------------RDLVSYNTLINGYAQVKEPCPALWLFRKM 201
           G +                            R +VS+NT+I+GY+       A+ +FR+M
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           +   I+P+  T V++  A + L    +G+  H  +Y     +  + +L +A+I+MY+KCG
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLH--LYAEDSGIRIDDVLGSALIDMYSKCG 323

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
           ++  A  VF  +   ++   WS+MI+G+   G                            
Sbjct: 324 IIEKAIHVFERLP-RENVITWSAMINGFAIHG---------------------------- 354

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G    A++ F KM   G+ P +V  + +L AC   G ++ G+R   Q +        I
Sbjct: 355 QAG---DAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
                ++D+  + G +D A      +P                                 
Sbjct: 412 EHYGCMVDLLGRSGLLDEAEEFILNMP--------------------------------- 438

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
              +KPD V +  +L AC   G VE GK+
Sbjct: 439 ---IKPDDVIWKALLGACRMQGNVEMGKR 464



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 154/330 (46%), Gaps = 20/330 (6%)

Query: 48  FFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP 107
           +  L  CK     +R+LF ++   ++  WNT++ GYS +   ++A+ ++  M  KG + P
Sbjct: 218 YMRLGDCKA----ARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM-KKGDIRP 272

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N  T   VL + +RL S + G  +H +    G+  D  + +ALI  YS  G I  A  VF
Sbjct: 273 NYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           E     ++++++ +ING+A   +   A+  F KM+ + ++P    ++ + +AC+      
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G+++ + +    G +   +     ++++  + GL++ AE     M +      W +++ 
Sbjct: 393 EGRRYFSQMVSVDG-LEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLG 451

Query: 288 GYTREGKIE---RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
               +G +E   R   +   M   D  ++ A+ + Y+  G +S+  E+  +M+   I  D
Sbjct: 452 ACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                       G   +D    LH+  +E+
Sbjct: 512 P-----------GCSLIDIDGVLHEFVVED 530


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/666 (39%), Positives = 384/666 (57%), Gaps = 51/666 (7%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF QI  P++  +NTL+  Y+       AL L+  M   G+V  + FTF  V+ +C    
Sbjct: 96  LFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVM-DGFTFSGVITACCN-- 152

Query: 124 SFKSGCQIHCHIIKFGLEFDLFI--RNALIHFYSIFGYINNAHKVFEG--SLARDLVSYN 179
               G     H + F   FD ++  +N+L+ +YS  G +  A  VF G     RD VS+N
Sbjct: 153 --HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++I  Y Q K    AL L+R M     + D FT  ++ +  + + D   G QFHA   K 
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKT 270

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                 N  + + +I+MYAKCG            GMS+S                    R
Sbjct: 271 --GFNKNRHVGSGLIDMYAKCG-----------AGMSES--------------------R 297

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           ++F+++   DLV W  MISGYSQ    S +ALE F +M+  G  PD+ + V  + AC  L
Sbjct: 298 KVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNL 357

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            +   GK+ H   +++ +    I +  A++ MY+KCG++  A  +F ++P++  TV+L N
Sbjct: 358 SSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQH-NTVTL-N 415

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
           SII+G AQHG+G  S+ +F +M    + P  +T V++L AC+H G VEEGK++F  M + 
Sbjct: 416 SIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDI 475

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI+P+ EHY CM+DLL R G+L EA  LI +MP+   S  W ALL ACR + N ++ E 
Sbjct: 476 FGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEK 535

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A  + L LEP +   Y++L++M +   +WEEA ++RKLM D GI+K PG S+IE N  +H
Sbjct: 536 AANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVH 595

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD----EEEKETVVSYHSE 653
            F+A   SHP+ KEI + L +M +K+K AGYVP+ V+  F  D    E+EKE ++++HSE
Sbjct: 596 VFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPD-VRWAFVKDDETGEQEKEIMLAHHSE 654

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGL+ ++  E + + KNLRICGDCH A K +S I RR+I VRDA RFH F+ G C
Sbjct: 655 KLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRC 714

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 715 SCGDYW 720



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 179/367 (48%), Gaps = 23/367 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN--HHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L      + L   LQ H + + +G N   H+ S  LI  +A   C  G+  SR +F 
Sbjct: 245 ASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSG-LIDMYA--KCGAGMSESRKVFE 301

Query: 67  QIDNPNIFIWNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +I   ++ +WNT++ GYS++     EAL  +  M   G   P++ +F   +++C+ LSS 
Sbjct: 302 EICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYW-PDDCSFVCAISACSNLSSP 360

Query: 126 KSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G Q H   +K  +  + + + NAL+  YS  G + +A K+F+     + V+ N++I G
Sbjct: 361 SQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAG 420

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ      +L LF +M  + I P + T V++ SAC        GK++  ++ K++  + 
Sbjct: 421 YAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMM-KDIFGIE 479

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQL 301
                 + +I++  + G ++ AER+  TM  S  +AAW++++    + G +   E+A   
Sbjct: 480 PEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQ 539

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F Q++  + V +  + S YS    + +A  +   M   GI           R   G   +
Sbjct: 540 FLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGI-----------RKKPGCSWI 588

Query: 362 DFGKRLH 368
           +  KR+H
Sbjct: 589 ELNKRVH 595



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 199/454 (43%), Gaps = 74/454 (16%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           +F  +L SC       +G  +H   +K  +    ++ N  I  YS    +  AH  F  +
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 171 LARDLVSYNTLINGYA-------------QVKEP------------------CPALWLFR 199
              ++ S+N LI  YA             Q+ +P                    AL LF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M++  +  D FTF  + +AC   N   + +Q H++ + +     S + +K +++  Y+K
Sbjct: 130 EMREMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSS--GFDSYVSVKNSLLTYYSK 185

Query: 260 CGLMNMAERVFSTMGMS-KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
            G++  AE VF+ MG   +   +W+SMI  Y +               +R L        
Sbjct: 186 NGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQH--------------KRGL-------- 223

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
                    +AL L+  M   G   D  T+ +VL     +  L  G + H + I+   F 
Sbjct: 224 ---------KALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIK-TGFN 273

Query: 379 RNIFLTTAVIDMYAKCGS-IDTALSVFYKIPKNLKTVSLFNSIISGLAQHG-LGETSIAV 436
           +N  + + +IDMYAKCG+ +  +  VF +I  +   + ++N++ISG +Q+  L   ++  
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGS--DLVVWNTMISGYSQNKELSVEALEC 331

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLA 495
           FR+M+  G  PD  +FV  + ACS+     +GKQF    +   I   Q+     +V + +
Sbjct: 332 FRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYS 391

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + G L +A  L Q MP   N+V   +++A    H
Sbjct: 392 KCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQH 424


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/731 (36%), Positives = 409/731 (55%), Gaps = 74/731 (10%)

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           G+   R++F  +   N+  W +L+ GY +  +  + + L+  M ++G V PN FTF  VL
Sbjct: 150 GVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG-VWPNPFTFTSVL 208

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           ++ A   +   G ++H   +KFG    +F+ N+LI+ YS  G +  A  VF     RD+V
Sbjct: 209 SAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMV 268

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+NTL+ G    +    AL LF   + S  +    T+  +   C  L    + +Q H+ V
Sbjct: 269 SWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCV 328

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K+      N++  TA+++ Y+KCG ++ A  +F  M  S++  +W++MI G  +   I 
Sbjct: 329 LKHGFHSDGNVM--TAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIP 386

Query: 297 RARQLFDQMDQRDLVS-----------------------------------WTAMISGYS 321
            A  LF +M + ++                                      TA+++ YS
Sbjct: 387 LAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYS 446

Query: 322 QVGGFSQALELFG-------------------------------KMESLGIHPDEVTMVA 350
           ++G   +AL +F                                KM   G+ P+E T+ +
Sbjct: 447 KLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISS 506

Query: 351 VLRACVGLGA-LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
            + AC    A +D G++ H   I+   +   I + +A++ MYA+ GSID+A  VF +  +
Sbjct: 507 AIDACASPTAGIDQGRQFHAISIK-YRYQDAICVGSALVTMYARKGSIDSARIVFER--Q 563

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + +  +NS+ISG AQHG  + ++  FR+ME +G++ DG TF+ V+  C+H GLV+EG+
Sbjct: 564 TDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQ 623

Query: 470 QFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           Q+F+SM +++ I P MEHY CMVDL +R G+LDE   LI+ MP+ A +++WR LL ACR+
Sbjct: 624 QYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRV 683

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H+N ++G++A QKLL LEPD  A YVLLSN+ A   RW+E  +VRKLMD   ++K  G S
Sbjct: 684 HKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCS 743

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           +I+    +H F+A  KSHP +++I   LK MT +LK  GY PNT  V+ D+ EE+KET++
Sbjct: 744 WIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETML 803

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSE+LALAFGLI +  +  ++I KNLR+CGDCH+  K++S I  REI++RD  RFH F
Sbjct: 804 VMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHF 863

Query: 709 KKGNCSCMDFW 719
             G CSC DFW
Sbjct: 864 NAGACSCGDFW 874



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 194/411 (47%), Gaps = 42/411 (10%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLE-FDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
           VL  C  +    SG Q+HC  +K G +  ++ +  AL+  Y   G + +   VFEG   R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           ++V++ +L+ GY Q +     + LF +M+   + P+ FTF ++ SA        +G++ H
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A   K  GC  S + +  ++INMY+KCGL+  A+ VF                       
Sbjct: 225 AQSVK-FGC-RSTVFVCNSLINMYSKCGLVEEAKAVFR---------------------- 260

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                     QM+ RD+VSW  +++G        +AL+LF    +      + T   V++
Sbjct: 261 ----------QMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIK 310

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
            C  L  L   ++LH   +++  F  +  + TA++D Y+KCG +D A ++F  +P +   
Sbjct: 311 LCANLKQLALARQLHSCVLKH-GFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNV 369

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           VS + ++I G  Q+     + A+F  M    +KP+  T+ TVL A     L +   Q  +
Sbjct: 370 VS-WTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIK 428

Query: 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           +  NY   P +     ++   ++ G  +EA  + + + +  + V W A+L+
Sbjct: 429 T--NYQHAPSVGT--ALLASYSKLGNTEEALSIFKMIDHK-DVVAWSAMLS 474



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 133/246 (54%), Gaps = 7/246 (2%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           ++++  Y + G +E  R +F+ M +R++V+WT++++GY Q    S  + LF +M + G+ 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTA 400
           P+  T  +VL A    GA+D G+R+H Q   +V FG    +F+  ++I+MY+KCG ++ A
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQ---SVKFGCRSTVFVCNSLINMYSKCGLVEEA 255

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
            +VF ++    + +  +N++++GL  +     ++ +F +      K    T+ TV+  C+
Sbjct: 256 KAVFRQM--ETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCA 313

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           +   +   +Q    +L +G          ++D  ++ G LD+A+ +   MP   N V W 
Sbjct: 314 NLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373

Query: 521 ALLAAC 526
           A++  C
Sbjct: 374 AMIGGC 379



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 133/274 (48%), Gaps = 9/274 (3%)

Query: 26  QIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           QIH QI+ +   H   + ++ L S+  L   +  L     +F  ID+ ++  W+ ++  Y
Sbjct: 421 QIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALS----IFKMIDHKDVVAWSAMLSCY 476

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS-FKSGCQIHCHIIKFGLEF 142
           S++     A  ++  M  +G+  PN FT    +++CA  ++    G Q H   IK+  + 
Sbjct: 477 SQAGDCDGATNVFIKMSMQGM-KPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQD 535

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
            + + +AL+  Y+  G I++A  VFE    RDLVS+N++I+GYAQ      AL  FR+M+
Sbjct: 536 AICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQME 595

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              I+ D  TF+A+   CT     + G+Q+   +  +   +   M   + ++++Y++ G 
Sbjct: 596 TVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHN-ISPTMEHYSCMVDLYSRAGK 654

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
           ++    +   M        W +++        +E
Sbjct: 655 LDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVE 688


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/607 (41%), Positives = 367/607 (60%), Gaps = 26/607 (4%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSI-----FGYINNAHKVFEGSLARDLVSYNTLING 184
           Q+H   +K  +    F+ + L+  YS       GY   A  +F+    R L+ +NT+I  
Sbjct: 34  QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGY---ARSIFDRIQRRSLIHWNTIIKC 90

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y + +     + LF ++    + PD FT   +   C  L   + GKQ H +  K +G  G
Sbjct: 91  YVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALK-IG-FG 147

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMG----------MSKSTAAWSSMISGYTREGK 294
           S++ ++ +++NMY+KCG ++ A +VF  M           +  +  +W++MI+GY + G 
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGD 207

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            + A +LF QM   DLV+W  MI+GY   G F  A+++F  M  LG  P   T+V+VL A
Sbjct: 208 FDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSA 267

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
             GL  L  G+ +H  Y+E   F  +  L T++I+MYAKCG I++AL+VF  I K  K V
Sbjct: 268 VSGLAVLGKGRWIHS-YMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQK--KKV 324

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             + +II GL  HG+   ++A+F EM   GLKP+ + F+ VL AC+H GLV++G+Q+F+ 
Sbjct: 325 GHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDM 384

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M+N Y I+P +EHYGC+VD+L R G L+EA   I++MP   N VIW +LL   R H    
Sbjct: 385 MMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKID 444

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           IGE A Q+++++ P+    Y+LLSNM A +  WE+   VR++M   G +K PG S +EH 
Sbjct: 445 IGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHK 504

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD-EEEKETVVSYHS 652
           GTLH F+    SHPQTKEI   + +M  KLK  G+VP+T QV+  ++ E+EKE  +  HS
Sbjct: 505 GTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHS 564

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LA+AFGLIN +    IRI KNLR+C DCH   KLLS+IY REI+VRD  RFH FK G+
Sbjct: 565 ERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGS 624

Query: 713 CSCMDFW 719
           CSCMD+W
Sbjct: 625 CSCMDYW 631



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 241/513 (46%), Gaps = 33/513 (6%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           L H+  L+L ++C + ++  Q+H   + + + NH   SS+L++ ++     N L  +R +
Sbjct: 14  LPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKI-NDLGYARSI 72

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F +I   ++  WNT+++ Y  +    + +VL+  ++ + +  P+NFT P V+  CARL  
Sbjct: 73  FDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL--PDNFTLPCVIKGCARLGV 130

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD---------- 174
            + G QIH   +K G   D+F++ +L++ YS  G I+ A KVF+G + +D          
Sbjct: 131 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 190

Query: 175 -LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
            LVS+N +INGY +  +   AL LF +M       D  T+  M +   ELN   +     
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIW----DLVTWNLMIAG-YELNGQFMDAVKM 245

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYT 290
             +   LG   S+  L  +V++  +   ++     + S M   G        +S+I  Y 
Sbjct: 246 FFMMLKLGSRPSHATL-VSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYA 304

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           + G IE A  +F  + ++ +  WTA+I G    G  + AL LF +M   G+ P+ +  + 
Sbjct: 305 KCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIG 364

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC   G +D G++     +        +     ++D+  + G ++ A +    +P +
Sbjct: 365 VLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS 424

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGK 469
              V ++ S++ G   H  G+  I  +    ++ + P+ +  ++ +    +  G+ E+  
Sbjct: 425 PNKV-IWMSLLGGSRNH--GKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVS 481

Query: 470 QFFESMLNYGIKPQ-----MEHYGCMVDLLARD 497
              E M   G +       +EH G + + +  D
Sbjct: 482 HVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGD 514


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 394/713 (55%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLLA   S   L +  Q+H  ++ +G++  +I    L+  +   G    +  +  +F  
Sbjct: 248 ASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGV---IVEALEIFKS 304

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D  N+ +WN ++  Y +     ++  L+  M++ G V PN FT+P +L +C        
Sbjct: 305 GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAG-VRPNEFTYPCLLRTCTYAGEINL 363

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH   IK G E D+++   LI  YS +G+++ A ++ E   A+D+VS+ ++I GY Q
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQ 423

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            +    AL  F+ MQ   I PD     +  SAC  +   R G+Q H+ VY          
Sbjct: 424 HEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVY---------- 473

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                     G S   + W+++++ Y R G+ + A  LF+ ++ 
Sbjct: 474 ------------------------VSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEH 509

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D ++W  M+SG++Q G + +ALE+F KM   G+  +  T V+ + A   L  +  GK++
Sbjct: 510 KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQI 569

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   I+         +  A+I +Y KCGSI+ A   F+++ +    VS +N+II+  +QH
Sbjct: 570 HATVIKTGCTSET-EVANALISLYGKCGSIEDAKMQFFEMSER-NHVS-WNTIITSCSQH 626

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G G  ++ +F +M+  GLKP+ VTF+ VL ACSH GLVEEG  +F+SM + +GI P+ +H
Sbjct: 627 GWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDH 686

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VD+L R G+LD A   ++ MP  AN+++WR LL+ACR+H+N +IGE+A + LL+LE
Sbjct: 687 YACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELE 746

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A YVLLSN  A T +W     VRK+M D G++K PG S+IE    +H F    + H
Sbjct: 747 PHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLH 806

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P   +I   L D+  +L   GY+     +  + ++E+K+     HSEKLA+AFGL++   
Sbjct: 807 PLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPP 866

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +R+ KNLR+C DCH   K  SE+  REI++RD  RFH F  GNCSC DFW
Sbjct: 867 SMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/501 (26%), Positives = 250/501 (49%), Gaps = 45/501 (8%)

Query: 27  IHGQIVHSGLNH-HISSSQLISFFALSGCKNGLF-RSRILFSQIDNPNIFIWNTLMRGYS 84
           IH + +  GL    I+ + LI  +A    K GL  R+R +F Q+   +   W  ++ GY+
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYA----KKGLVQRARRVFEQLSARDNVSWVAMLSGYA 119

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R+   +EA+ LY  M   G+V P  +    VL++C + + F+ G  +H  + K G   + 
Sbjct: 120 RNGLGEEAVGLYHQMHCSGVV-PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSET 178

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
            + NALI  Y  FG ++ A +VF      D V++NTLI+ +AQ      AL +F +M+ S
Sbjct: 179 VVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLS 238

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
              PD  T  ++ +AC  + D   GKQ H+ + K    +  + +++ +++++Y KCG+  
Sbjct: 239 GWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK--AGMSPDYIIEGSLLDLYVKCGV-- 294

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                                         I  A ++F   D+ ++V W  M+  Y Q+ 
Sbjct: 295 ------------------------------IVEALEIFKSGDRTNVVLWNLMLVAYGQIS 324

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
             +++ +LF +M + G+ P+E T   +LR C   G ++ G+++H   I+   F  +++++
Sbjct: 325 DLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT-GFESDMYVS 383

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
             +IDMY+K G +D A  +   +    K V  + S+I+G  QH   + ++  F++M+L G
Sbjct: 384 GVLIDMYSKYGWLDKARRILEVLEA--KDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG 441

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           + PD +   + + AC+    + +G+Q    +   G    +  +  +V+L AR GR  EA+
Sbjct: 442 IWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAF 501

Query: 505 GLIQSMPYDANSVIWRALLAA 525
            L +++ +  + + W  +++ 
Sbjct: 502 SLFEAIEHK-DKITWNGMVSG 521



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 19/179 (10%)

Query: 350 AVLRACVGLGALDFGKRL----------------HQQYIENVVFGRNIFLTTAVIDMYAK 393
           A +R C GLG++DF   L                H + I     G +      +ID+YAK
Sbjct: 31  AKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAI-TCGLGEDRIAGNLLIDLYAK 89

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
            G +  A  VF ++      VS + +++SG A++GLGE ++ ++ +M   G+ P      
Sbjct: 90  KGLVQRARRVFEQLSAR-DNVS-WVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLS 147

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           +VL AC+   L E+G+     +   G   +      ++ L  R G L  A  +   MPY
Sbjct: 148 SVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY 206


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 391/666 (58%), Gaps = 48/666 (7%)

Query: 64   LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
             +  +D  N+  WN+++   +R     EAL  ++S+   G++ P   +FP  + SC+ L 
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLI-PTRSSFPCTIKSCSALC 1156

Query: 124  SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               SG   H     FG E DLF+ +ALI  YS  G + +A  +F+    R++VS+ ++I 
Sbjct: 1157 DLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 1216

Query: 184  GYAQVKEPCPALWLFR-------KMQDSCIQP-DAFTFVAMFSACTELNDPRIGKQFHAV 235
            GY Q ++   AL LF+       +++D    P D+   V++ SAC+ ++   I +  H  
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 1276

Query: 236  VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            V K  G  GS + +   +++ YAKCG   ++++VF  M   K   +W+SMI+ Y + G  
Sbjct: 1277 VVKK-GFDGS-IGVGNTLMDAYAKCGQPLVSKKVFDWM-EEKDDISWNSMIAVYAQSG-- 1331

Query: 296  ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF-GKMESLGIHPDEVTMVAVLRA 354
                                 +SG        +ALE+F G +  +G+  + VT+ AVL A
Sbjct: 1332 ---------------------LSG--------EALEVFHGMVRHVGVRYNAVTLSAVLLA 1362

Query: 355  CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
            C   GAL  GK +H Q I+ +    N+ + T++IDMY KCG ++ A   F ++ +  K V
Sbjct: 1363 CAHAGALRAGKCIHDQVIK-MDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE--KNV 1419

Query: 415  SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
              + ++++G   HG  + ++ +F +M   G+KP+ +TFV+VL ACSH GLVEEG  +F +
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNA 1479

Query: 475  MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            M + Y I+P +EHYGCMVDL  R G L+EAY LI+ M    + V+W +LL ACR+H+N  
Sbjct: 1480 MKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVD 1539

Query: 534  IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
            +GEIA QKL +L+PD+  +YVLLSN+ A+  RW +  ++R LM +  + KPPG+S +E  
Sbjct: 1540 LGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 1599

Query: 594  GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
            G +H FL   K HP  + I   L+ +T++L+  GYVPN   V+ DVDEEEKE ++  HSE
Sbjct: 1600 GRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSE 1659

Query: 654  KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
            KLA+AFG++NS    TI I KNLR+CGDCH   KL+S++  R+ +VRD+ RFH FK G C
Sbjct: 1660 KLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVC 1719

Query: 714  SCMDFW 719
            SC D+W
Sbjct: 1720 SCGDYW 1725



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/409 (37%), Positives = 237/409 (57%), Gaps = 20/409 (4%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-----E 168
           F+L +C    +FK   QIH  II+ GL  D  +   LIH YS  G I  A  +F      
Sbjct: 32  FLLQNC---KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
            +   +L+     ING ++      AL L++ M    I  D FTF  +  ACT      +
Sbjct: 89  CTFTWNLIIRANTINGLSE-----QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDL 143

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           GK  H  + K  G  G ++ ++  +I+ Y KCG    A +VF  M + ++  +W+++ISG
Sbjct: 144 GKVVHGSLIK-YGFSG-DVFVQNNLIDFYFKCGHTRFALKVFEKMRV-RNVVSWTTVISG 200

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
               G ++ AR++FD++  +++VSWTAMI+GY +     +ALELF +M++  I P+E TM
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V++++AC  +G L  G+ +H   I+N +    ++L TA+IDMY+KCGSI  A+ VF  +P
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCI-EIGVYLGTALIDMYSKCGSIKDAIEVFETMP 319

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  K++  +NS+I+ L  HGLG+ ++ +F EME + +KPD +TF+ VLCAC H   V+EG
Sbjct: 320 R--KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377

Query: 469 KQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
             +F  M  +YGI P  EHY CM +L AR   LDEA+   + +   ANS
Sbjct: 378 CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANS 426



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 196/396 (49%), Gaps = 74/396 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L LL++CK+ K   QIH +I+ SGL N  + + +LI  ++  G    +  + +LF QI N
Sbjct: 31  LFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG---RIAYAILLFYQIQN 87

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P  F WN ++R  + +   ++AL+LY +M+ +GI + + FTFPFV+ +C    S   G  
Sbjct: 88  PCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA-DKFTFPFVIKACTNFLSIDLGKV 146

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT---------- 180
           +H  +IK+G   D+F++N LI FY   G+   A KVFE    R++VS+ T          
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 181 ---------------------LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                                +INGY + ++P  AL LF++MQ   I P+ +T V++  A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CTE+    +G+  H    KN  C+   + L TA+I+MY+KCG +  A  VF TM   KS 
Sbjct: 267 CTEMGILTLGRGIHDYAIKN--CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSL 323

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
             W+SMI+                             + G  Q     +AL LF +ME +
Sbjct: 324 PTWNSMITSLG--------------------------VHGLGQ-----EALNLFSEMERV 352

Query: 340 GIHPDEVTMVAVLRACVGLGALDFG----KRLHQQY 371
            + PD +T + VL ACV +  +  G     R+ Q Y
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHY 388



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 21/269 (7%)

Query: 27   IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
            +HG +V  G +  I     +   A + C   L  S+ +F  ++  +   WN+++  Y++S
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTL-MDAYAKCGQPLV-SKKVFDWMEEKDDISWNSMIAVYAQS 1330

Query: 87   DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
                EAL ++  M+    V  N  T   VL +CA   + ++G  IH  +IK  LE+++ +
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 1390

Query: 147  RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
              ++I  Y   G +  A K F+    +++ S+  ++ GY        AL +F KM  + +
Sbjct: 1391 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 1450

Query: 207  QPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYK--------NLGCVGSNMLLKTAVINMY 257
            +P+  TFV++ +AC+       G   F+A+ +K        + GC          +++++
Sbjct: 1451 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC----------MVDLF 1500

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
             + G +N A  +   M M      W S++
Sbjct: 1501 GRAGCLNEAYNLIKRMKMKPDFVVWGSLL 1529



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 174/385 (45%), Gaps = 67/385 (17%)

Query: 298  ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
            A   +  +D+ ++ SW ++I+  ++ G   +AL  F  +  LG+ P   +    +++C  
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 358  LGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
            L  L  G+  HQQ     VFG   ++F+++A+IDMY+KCG +  A ++F +IP  L+ V 
Sbjct: 1155 LCDLVSGRMSHQQAF---VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP--LRNVV 1209

Query: 416  LFNSIISGLAQHGLGETSIAVFR-------EMELMGLKP-DGVTFVTVLCACS------- 460
             + S+I+G  Q+   + ++ +F+       E+E     P D V  V+VL ACS       
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGI 1269

Query: 461  ----HGGLVEEG---------------KQFFESMLNYGIKPQMEH-----YGCMVDLLAR 496
                HG +V++G                +  + +++  +   ME      +  M+ + A+
Sbjct: 1270 TEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQ 1329

Query: 497  DGRLDEA----YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
             G   EA    +G+++ +    N+V   A+L AC      + G+    +++ ++ ++   
Sbjct: 1330 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVC 1389

Query: 553  Y-VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
                + +M  +  R E A++    M +  ++    W+ +         +A    H + KE
Sbjct: 1390 VGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK---SWTAM---------VAGYGMHGRAKE 1437

Query: 612  IELMLKDMTMKLKSAGYVPNTVQVV 636
                  D+  K+  AG  PN +  V
Sbjct: 1438 A----LDIFYKMVRAGVKPNYITFV 1458



 Score = 42.4 bits (98), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 396  SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            S+ + L+ ++    +   V  +NS+I+ LA+ G    ++  F  +  +GL P   +F   
Sbjct: 1089 SLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT 1148

Query: 456  LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            + +CS    +  G+   +    +G +  +     ++D+ ++ G+L +A  L   +P   N
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPL-RN 1207

Query: 516  SVIWRALLAA 525
             V W +++  
Sbjct: 1208 VVSWTSMITG 1217


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/609 (41%), Positives = 369/609 (60%), Gaps = 14/609 (2%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF---YSIFGYINNAHKVFEGSLA 172
           L  C++    K   QIH  ++K GL  D +     + F    +   ++  A  VF+G   
Sbjct: 21  LQRCSKQEELK---QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            D   +N +I G++   EP  +L L+++M  S    +A+TF ++  AC+ L+      Q 
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + K LG   +++    ++IN YA  G   +A  +F  +       +W+S+I GY + 
Sbjct: 138 HAQITK-LG-YENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSWNSVIKGYVKA 194

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           GK++ A  LF +M +++ +SWT MISGY Q     +AL+LF +M++  + PD V++   L
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  LGAL+ GK +H  Y+       +  L   +IDMYAKCG ++ AL VF  I K  K
Sbjct: 255 SACAQLGALEQGKWIHS-YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK--K 311

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           +V  + ++ISG A HG G  +I+ F EM+ MG+KP+ +TF  VL ACS+ GLVEEGK  F
Sbjct: 312 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371

Query: 473 ESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            SM  +Y +KP +EHYGC+VDLL R G LDEA   IQ MP   N+VIW ALL ACR+H+N
Sbjct: 372 YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 431

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++GE  G+ L+ ++P HG  YV  +N+ A   +W++A + R+LM + G+ K PG S I 
Sbjct: 432 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD-VDEEEKETVVSY 650
             GT H FLA  +SHP+ ++I+   + M  KL+  GYVP   +++ D VD++E+E +V  
Sbjct: 492 LEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQ 551

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+ +GLI ++    IRI KNLR+C DCH   KL+S+IY+R+I++RD  RFH F+ 
Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 611

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 612 GKCSCGDYW 620


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/650 (40%), Positives = 380/650 (58%), Gaps = 38/650 (5%)

Query: 100 LSKGIVSPN-NFTF----PFVLN----SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
           ++  I +PN  F F    P +L+    SC      K   Q+H   IK G   D      +
Sbjct: 1   MNSTIYNPNRTFNFSPQPPLILSKPFTSCKTPRDLK---QLHAIFIKTGQIQDPLTAAEV 57

Query: 151 IHFYSIFGY-INNAHKVFEGSLARDLVSYNTLINGYAQVKEP---CPALWLFRKMQ-DSC 205
           I F +     I+ A  VF      +   +NT++   A+  +      AL LF  M  D  
Sbjct: 58  IKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGR 117

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P+ FTF ++  AC   +  R GKQ H ++ K  G    +  + + ++ MY  C +M  
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVK-FG-FHEDEFVISNLVRMYVMCAVMED 175

Query: 266 AERVFST----------MGMSK-----STAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           A  +F            M + K     +   W+ MI G  R G I+ A+ LFD+M QR +
Sbjct: 176 AYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSV 235

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW  MISGY+Q G F +A+ LF +M+S  I P+ VT+V+VL A   +GAL+ GK +H  
Sbjct: 236 VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
             +N +   ++ L +A++DMY+KCGSID AL VF  +PK  +    +++II   A HG  
Sbjct: 296 AGKNKIEIDDV-LGSALVDMYSKCGSIDEALQVFETLPK--RNAITWSAIIGAFAMHGRA 352

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGC 489
           E +I  F  M   G+ P+ V ++ +L ACSH GLVEEG+ FF  M+   G++P++EHYGC
Sbjct: 353 EDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC 412

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R G L+EA  LI++MP + + VIW+ALL AC++H+N K+GE   + L++L P  
Sbjct: 413 MVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHD 472

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YV LSN+ A    WE   +VR  M    I+K PG S+IE +G +H FL    SH + 
Sbjct: 473 SGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKA 532

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           KEI+ ML +M+MKL+S GY PNT++V  + DE+E+   + YHSEK+A+AFGLI++  +  
Sbjct: 533 KEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHP 592

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++I KNLRIC DCH + KL+S IY+R+I+VRD  RFH F+ G+CSCMD+W
Sbjct: 593 LKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/516 (46%), Positives = 344/516 (66%), Gaps = 10/516 (1%)

Query: 208 PDAFTFVAMFSACTELNDPRIGKQF--HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           P+ +TFV +F AC        G+Q   HA+    +G + SN+ +  A+I MYA  GL++ 
Sbjct: 30  PNRYTFVFVFKACGNGLGVLEGEQIRVHAI---KIG-LESNLFVTNAMIRMYANWGLVDE 85

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A RVF    + +   +W+ MI GY   G+I RA+++FD+M +RD+VSWT +I+GY QVG 
Sbjct: 86  ARRVFD-WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGC 144

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
           F +AL+LF +M   G  P+E T+ + L AC  L ALD G+ +H  YI+      N  L  
Sbjct: 145 FKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHV-YIDKSEIKMNERLLA 203

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           +++DMYAKCG ID A  VF+        V  +N++I G A HG  + +I +F +M++  +
Sbjct: 204 SLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV 263

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAY 504
            P+ VTFV +L ACSHG LVEEG+ +F+SM + YGI+P++EHYGCMVDLL R G L EA 
Sbjct: 264 SPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAE 323

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
             + +MP   ++ IW ALL ACR+H++ + G+  G+ + +L+ DH   +VLL+N+ + + 
Sbjct: 324 ETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASG 383

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           +W+EA+ VR+ ++ SG +K PG S IE NG  H+FL   +SHPQTK++ L L +MT KLK
Sbjct: 384 QWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLK 443

Query: 625 SAGYVPNTVQVVFDV-DEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
           +AGYVP   +V+ D+ DEE+KET +S HSEKLA+AFGLIN+     IRI KNLR+C DCH
Sbjct: 444 NAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCH 503

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            A K +S++Y+REI+VRD IR+H FK G CSC D+W
Sbjct: 504 EATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 190/459 (41%), Gaps = 110/459 (23%)

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
           S   ++ ++ SM+      PN +TF FV  +C        G QI  H IK GLE +LF+ 
Sbjct: 11  SSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVT 70

Query: 148 NALIHFYSIFGYINNAHKVFEGSL-------------------------------ARDLV 176
           NA+I  Y+ +G ++ A +VF+ SL                                RD+V
Sbjct: 71  NAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 130

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+ T+I GY QV     AL LF +M  +   P+ FT  +  +AC  L     G+  H  V
Sbjct: 131 SWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIH--V 188

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF-STMGMSKSTAAWSSMISGYTREGKI 295
           Y +   +  N  L  ++++MYAKCG ++ A +VF    G+      W++MI GY   GK 
Sbjct: 189 YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKS 248

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           + A  LF+QM                             K+E   + P++VT VA+L AC
Sbjct: 249 KEAIDLFEQM-----------------------------KVEK--VSPNKVTFVALLNAC 277

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
                       H + +E    GR  F                 +++  Y I   ++   
Sbjct: 278 S-----------HGKLVEE---GRGYF----------------KSMASSYGIEPEIEH-- 305

Query: 416 LFNSIISGLAQHG-LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            +  ++  L + G L E    VF     M + PD   +  +L AC     +E G++  + 
Sbjct: 306 -YGCMVDLLGRSGLLKEAEETVFN----MPMAPDATIWGALLGACRIHKDIERGQRIGKI 360

Query: 475 MLNYGIKPQMEHYGCMV---DLLARDGRLDEAYGLIQSM 510
           +         +H GC V   +L +  G+ DEA  + Q +
Sbjct: 361 IKEL----DSDHIGCHVLLANLYSASGQWDEAKAVRQKI 395



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R++ +F ++   ++  W T++ GY +    +EAL L+  ML  G   PN FT    L +C
Sbjct: 116 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTG-PPPNEFTLASALAAC 174

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF--EGSLARDLVS 177
           A L +   G  IH +I K  ++ +  +  +L+  Y+  G I+ A KVF  E  L   +  
Sbjct: 175 ANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWP 234

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N +I GYA   +   A+ LF +M+   + P+  TFVA+ +AC+       G+ +   + 
Sbjct: 235 WNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMA 294

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
            + G +   +     ++++  + GL+  AE     M M+     W +++        IER
Sbjct: 295 SSYG-IEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIER 353

Query: 298 AR---QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            +   ++  ++D   +     + + YS  G + +A  +  K+E  G
Sbjct: 354 GQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSG 399


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/618 (41%), Positives = 383/618 (61%), Gaps = 12/618 (1%)

Query: 27  IHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +H QI+  GL N  ++  +LISF A+    +  +  R +F QI  PN F++N+L+RGYS 
Sbjct: 7   LHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQR-MFDQIPQPNKFMYNSLIRGYSN 65

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           SD P +A++L+  M+  G+ SPN FT PFVL +C   S++     +H   IK G+   +F
Sbjct: 66  SDDPIDAVLLFRRMICSGL-SPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           ++NALI  Y + G I+ A K+F+    + LVS+N++I GYA +     A  LFRKM++  
Sbjct: 125 VQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWG 184

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++PD FTFV + S C++  D  +G+  H  +   +  V  +++++ A+++MYAKCG ++ 
Sbjct: 185 MEPDGFTFVNLLSVCSQSRDLDLGRYVHFCI--EITGVKIDIIVRNALVDMYAKCGNLHS 242

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A+ +F      K+  +W+SMIS Y + G IE ARQ+FDQM  +++VSW +MIS Y + G 
Sbjct: 243 AQAIFDRT-QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 301

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
           + +AL+LF KM +  + PDE T+V++L AC  LG L  GK++H  YI +      + L  
Sbjct: 302 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHN-YILSNKGAYGVTLYN 360

Query: 386 AVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           ++IDMYAKCG + TAL +F ++P KNL +   +N II  LA HG G  +I +F EM+  G
Sbjct: 361 SLIDMYAKCGPVVTALDIFLEMPGKNLVS---WNVIIGALALHGCGLEAIKLFEEMQADG 417

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEA 503
             PD +T   +L ACSH GLV+ G  +F+ M + Y +  ++EHY CMVDLL R G L EA
Sbjct: 418 TLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEA 477

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
             LI  MP   + V+W ALL ACR+H N +IG+   ++LL+LEP  G  YVL+SN+  E 
Sbjct: 478 IELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEA 537

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RWE+ +++RKLM D GI+K    S IE +G ++ F+   K H  +  I  ML  +T  L
Sbjct: 538 QRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHL 597

Query: 624 KSAGYVPNTVQVVFDVDE 641
           +SAGY+ N   V F+ +E
Sbjct: 598 RSAGYLCNISSVFFEAEE 615


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/647 (40%), Positives = 371/647 (57%), Gaps = 44/647 (6%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WN  +R  +R    QEAL LY  ML+ G  SPN FTFPF   SCA LS   +G Q+H H+
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGD-SPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDL-VSYNTLINGYAQVKEPCP 193
           IK G E + F++ +LI  Y     I +A KVF E   +R+L V YN LI GY+       
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ LFR+M+   +  +A T + +   C        G   HA   +               
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVR--------------- 187

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
                               G+    +  + +++ Y R G ++ AR+LFD M ++ L++W
Sbjct: 188 -------------------FGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITW 228

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            AMISGY+Q G     L+L+ KME  GI PD VT+V VL +C  LGA   G+ + Q+ IE
Sbjct: 229 NAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQR-IE 287

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              FG N FL  A+I+MYA+CG++  A ++F  + +  K V  + +II+G   HG GE +
Sbjct: 288 LSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE--KNVISWTAIIAGYGMHGQGELA 345

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVD 492
           + +F EM      PDG  FV+VL ACSH GL E+G  +F +M  +YG++P  EHY C+VD
Sbjct: 346 VQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVD 405

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R GRL+EA  LI SM  + +  +W ALL AC++HRN ++ E+A +K+++ EP +  +
Sbjct: 406 LLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGY 465

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVLLSN+ +E    E   +VR +M +  ++K PG SY+E+ G +H FLA  ++HPQ +EI
Sbjct: 466 YVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEI 525

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
             ML  +   +K  G   +  Q   +   EE  T +  HSEKLA+AFGLIN+     I +
Sbjct: 526 YHMLDGLEDIIKRRGGSNDNDQ---ESRNEELITGMGVHSEKLAIAFGLINTEPGTEITV 582

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCHL  KL+SEI  R+++VRDA RFH FK G CSC D+W
Sbjct: 583 IKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 176/341 (51%), Gaps = 20/341 (5%)

Query: 15  LESCKSLKQAL---QIHGQIVHSGLNHH-ISSSQLISFFALSGCK-NGLFRSRILFSQID 69
            +SC SL   L   Q+HG ++ +G        + LIS +    CK + +  +R +F +  
Sbjct: 63  FKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMY----CKCSTIASARKVFDENH 118

Query: 70  NP-NIFI-WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +  N+ + +N L+ GYS +    +A++L+  M  +G VS N  T   ++  CA       
Sbjct: 119 HSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEG-VSVNAVTMLGLIPVCAGPIHLGF 177

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H   ++FGL+ DL + N L+  Y   G ++ A K+F+G   + L+++N +I+GYAQ
Sbjct: 178 GTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQ 237

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                  L L+RKM+ + I PD  T V + S+C  L     G++    +   L   G N 
Sbjct: 238 NGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRI--ELSGFGFNP 295

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-- 305
            LK A+INMYA+CG +  A  +F  M   K+  +W+++I+GY   G+ E A QLFD+M  
Sbjct: 296 FLKNALINMYARCGNLVKARAIFDGM-TEKNVISWTAIIAGYGMHGQGELAVQLFDEMIS 354

Query: 306 --DQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHP 343
             +  D  ++ +++S  S  G   + L  F  ME   G+ P
Sbjct: 355 SDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQP 395


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/700 (36%), Positives = 398/700 (56%), Gaps = 42/700 (6%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           LK   Q++ Q++ SGL  H     +I F         +  +   F ++  P+I +WN ++
Sbjct: 15  LKHLDQVYVQLIVSGL--HKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAII 72

Query: 81  RGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           +GY++ +     + +Y  M +S+  V PN FTF +VL +C   S    G QIH    K+G
Sbjct: 73  KGYTQKNIVDAPIRMYMDMQISQ--VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYG 130

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
              ++F++N+L+  Y+ FG I+ A  VF+    R +VS+ ++I+GY Q  +P  AL +F+
Sbjct: 131 FGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFK 190

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M+   ++PD    V++ +A T + D   GK  H +V K                     
Sbjct: 191 EMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTK--------------------- 229

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
                        +G+        S+ + Y + G +E AR  F++M++ +L+ W AMISG
Sbjct: 230 -------------LGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISG 276

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           Y+  G   +A++LF +M +  I  D +TM + + A   +G+L+  + L   YI    +  
Sbjct: 277 YANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWL-DGYISKSEYRD 335

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           + F+ T +IDMYAKCGSI  A  VF ++    K V L++ +I G   HG G+ +I ++ E
Sbjct: 336 DTFVNTGLIDMYAKCGSIYLARCVFDRVAD--KDVVLWSVMIMGYGLHGHGQEAICLYNE 393

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499
           M+  G+ P+  TF+ +L AC + GLV+EG + F  M ++GI+P  +HY C+VDLL R G 
Sbjct: 394 MKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGY 453

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L++AY  I SMP      +W ALL+AC++HR  ++GEIA ++L  L+P +  HYV LSN+
Sbjct: 454 LNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNL 513

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A  + W     VR +M   G+ K  G S IE NG L  F    +SHP++KEI   L  +
Sbjct: 514 YASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRL 573

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             +LK+AGYVP+   V+ D++ EE E  + +HSE+LA+A+G+I++    T+RITKNLR C
Sbjct: 574 EKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRAC 633

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +CH A KL+S++  REI++RDA RFH FK G CSC DFW
Sbjct: 634 INCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/674 (37%), Positives = 386/674 (57%), Gaps = 67/674 (9%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W   +R  +RS+  +EA+  Y  M   G   P+NF FP VL + + L   K+G QIH   
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118

Query: 136 IKFG---------------------LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +KFG                     +    F  NAL+  Y+  G ++++  +FE  + RD
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRD 178

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+NT+I+ ++Q      AL  FR M    ++ D  T  ++  AC+ L    +GK+ HA
Sbjct: 179 MVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHA 238

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            V +N   +  N  + +A+++MY  C                                 +
Sbjct: 239 YVLRNNDLI-ENSFVGSALVDMYCNCR--------------------------------Q 265

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLR 353
           +E  R++FD +  R +  W AMISGY++ G   +AL LF +M +  G+ P+  TM +V+ 
Sbjct: 266 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 325

Query: 354 ACV-GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           ACV  L A+  GK +H   I N++   +I + +A++DMYAKCG ++ +  VF ++P   K
Sbjct: 326 ACVHSLAAIAKGKEIHAYAIRNML-ASDITVGSALVDMYAKCGCLNLSRRVFNEMPN--K 382

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMG-----LKPDGVTFVTVLCACSHGGLVEE 467
            V  +N +I     HG GE ++ +F+ M          KP+ VTF+TV  ACSH GL+ E
Sbjct: 383 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISE 442

Query: 468 GKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAA 525
           G   F  M  ++G++P  +HY C+VDLL R G+L+EAY L+ +MP + + V  W +LL A
Sbjct: 443 GLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 502

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR+H+N ++GE+A + LL LEP+  +HYVLLSN+ +    W +A +VRK M   G++K P
Sbjct: 503 CRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 562

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S+IE    +H+F+A   SHPQ++++   L+ ++ K++  GYVP+T  V+ +VDE+EKE
Sbjct: 563 GCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKE 622

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  HSEKLA+AFG++N+    TIR+ KNLR+C DCH A K +S+I  REI+VRD  RF
Sbjct: 623 NLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRF 682

Query: 706 HLFKKGNCSCMDFW 719
           H FK+G CSC D+W
Sbjct: 683 HHFKEGTCSCGDYW 696



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 198/430 (46%), Gaps = 42/430 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           S+ LF    + ++  WNT++  +S+SD   EAL  +  M+ +G V  +  T   VL +C+
Sbjct: 167 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG-VELDGVTIASVLPACS 225

Query: 121 RLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            L     G +IH ++++   L  + F+ +AL+  Y     + +  +VF+  L R +  +N
Sbjct: 226 HLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWN 285

Query: 180 TLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACT-ELNDPRIGKQFHAVVY 237
            +I+GYA+      AL LF +M + + + P+  T  ++  AC   L     GK+ HA   
Sbjct: 286 AMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAI 345

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           +N+  + S++ + +A+++MYAKCG +N++ RVF+ M  +K+   W+ +I      GK E 
Sbjct: 346 RNM--LASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEE 402

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A +LF  M               ++ G   +A             P+EVT + V  AC  
Sbjct: 403 ALELFKNM--------------VAEAGRGGEA------------KPNEVTFITVFAACSH 436

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
            G +  G  L  +   +            V+D+  + G ++ A  +   +P     V  +
Sbjct: 437 SGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAW 496

Query: 418 NSIISGLAQHG---LGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFE 473
           +S++     H    LGE +        L+ L+P+  +   +L    S  GL  +  +  +
Sbjct: 497 SSLLGACRIHQNVELGEVAAK-----NLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRK 551

Query: 474 SMLNYGIKPQ 483
           +M   G+K +
Sbjct: 552 NMRQMGVKKE 561



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 164/353 (46%), Gaps = 23/353 (6%)

Query: 6   LEHSSLLALLESCKSLKQ---ALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFR 60
           L+  ++ ++L +C  L++     +IH  ++ +   + +    S L+  +    C+  +  
Sbjct: 212 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYC--NCRQ-VES 268

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            R +F  I    I +WN ++ GY+R+   ++AL+L+  M+    + PN  T   V+ +C 
Sbjct: 269 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACV 328

Query: 121 R-LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
             L++   G +IH + I+  L  D+ + +AL+  Y+  G +N + +VF     ++++++N
Sbjct: 329 HSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWN 388

Query: 180 TLINGYAQVKEPCPALWLFRKM-----QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
            LI       +   AL LF+ M     +    +P+  TF+ +F+AC+       G     
Sbjct: 389 VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFY 448

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS-KSTAAWSSMISGYTREG 293
            +  + G V         V+++  + G +  A  + +TM        AWSS++       
Sbjct: 449 RMKHDHG-VEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 507

Query: 294 KIE----RARQLFDQMDQRDLVSWTAMISG-YSQVGGFSQALELFGKMESLGI 341
            +E     A+ L     + ++ S   ++S  YS  G +++A+E+   M  +G+
Sbjct: 508 NVELGEVAAKNLLHL--EPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGV 558



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 18/187 (9%)

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R   SW   +   ++   F +A+  + +M   G  PD     AVL+A  GL  L  G+++
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSI-------DTALSVFYKIPKNLKTVSLF--- 417
           H   ++      ++ +   +++MY KCG I       +  ++++ K+ +   + +LF   
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 418 --------NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
                   N++IS  +Q      ++A FR M L G++ DGVT  +VL ACSH   ++ GK
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 470 QFFESML 476
           +    +L
Sbjct: 235 EIHAYVL 241


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/717 (36%), Positives = 403/717 (56%), Gaps = 54/717 (7%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           + +  S K LKQ   +H  I+ + L     I  + LI+ +A   C++ L  +R  F ++ 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYAR--CRD-LELARKTFDEMG 121

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI--VSPNNFTFPFVLNSCARLSSFKS 127
              +  WN L+ GYSR+   + AL +Y  M+SK    + P+  TF   L +C  +     
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +I    +  G   D  ++NALI+ YS  G + +A KVF+    RD++++NT+I+GYA+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL LF++M  +  +P+  TF+ + +ACT L D   G+  H  V ++     S++
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED--GYESDL 299

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++   ++NMY KC                                  +E ARQ+F++M  
Sbjct: 300 VIGNVLLNMYTKCS-------------------------------SSLEEARQVFERMRT 328

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+++W  +I  Y Q G    AL++F +M+   + P+E+T+  VL AC  LGA   GK +
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 368 HQQYIENVVFGR---NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           H      +  GR   ++ L  ++++MY +CGS+D  + VF  I    K++  ++++I+  
Sbjct: 389 HAL----IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRD--KSLVSWSTLIAAY 442

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           AQHG   T +  F E+   GL  D VT V+ L ACSHGG+++EG Q F SM+ ++G+ P 
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPD 502

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
             H+ CMVDLL+R GRL+ A  LI  MP+  ++V W +LL+ C+LH + K       KL 
Sbjct: 503 YRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF 562

Query: 544 DLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           +LE  D  +   LLSN+ AE  RW++ R+ R   +    +K PG SYIE N T+H F+A 
Sbjct: 563 ELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAG 619

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            KSHP+ + I   +K ++ ++K AGYVP+   V+ +V EEEKE ++ YHSEKLA+A+GLI
Sbjct: 620 DKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLI 679

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++     + I KNLR C DCH A K +S I  R+I+VRD+ RFH F+ G+CSC D+W
Sbjct: 680 STPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 236/477 (49%), Gaps = 44/477 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  I++PN   W  ++  ++R+   +EAL  Y  M+ +G+  P+   F   +  C+   
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGAMFVVAIGVCSSSK 72

Query: 124 SFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
             K G  +H  I++   LEFD+ +  ALI  Y+    +  A K F+    + LV++N LI
Sbjct: 73  DLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 183 NGYAQVKEPCPALWLFRKMQDSC---IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            GY++  +   AL +++ M       ++PDA TF +   ACT + D   G++  A    +
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVAS 192

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                S+ +++ A+INMY+KCG +  A +VF  +  ++   AW++MISGY ++G      
Sbjct: 193 --GYASDSIVQNALINMYSKCGSLESARKVFDRL-KNRDVIAWNTMISGYAKQG------ 243

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                                      +QALELF +M      P+ VT + +L AC  L 
Sbjct: 244 -------------------------AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE 278

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDTALSVFYKIPKNLKTVSLFN 418
            L+ G+ +H++  E+  +  ++ +   +++MY KC  S++ A  VF ++    + V  +N
Sbjct: 279 DLEQGRAIHRKVRED-GYESDLVIGNVLLNMYTKCSSSLEEARQVFERM--RTRDVITWN 335

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
            +I    Q+G  + ++ +F++M+L  + P+ +T   VL AC+  G   +GK     + + 
Sbjct: 336 ILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             K  +     ++++  R G LD+  G+  ++  D + V W  L+AA   H +++ G
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-RDKSLVSWSTLIAAYAQHGHSRTG 451



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 202/412 (49%), Gaps = 41/412 (9%)

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y   G + +A  VF      + VS+  ++  +A+      AL  +R+M    ++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           FV     C+   D + G+  HA++ +    +  +++L TA+I MYA+C  + +A + F  
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETR-LLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           MG  K+   W+++I+GY+R G    A +++  M                     S++ E 
Sbjct: 120 MG-KKTLVTWNALIAGYSRNGDHRGALKIYQDM--------------------VSKSPE- 157

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
                  G+ PD +T  + L AC  +G +  G+ +  + + +  +  +  +  A+I+MY+
Sbjct: 158 -------GMKPDAITFSSALYACTVVGDISQGREIEARTVAS-GYASDSIVQNALINMYS 209

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCGS+++A  VF ++ KN + V  +N++ISG A+ G    ++ +F+ M     KP+ VTF
Sbjct: 210 KCGSLESARKVFDRL-KN-RDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTF 267

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR-DGRLDEAYGLIQSMP 511
           + +L AC++   +E+G+     +   G +  +     ++++  +    L+EA  + + M 
Sbjct: 268 IGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERM- 326

Query: 512 YDANSVIWRALLAACRLHRNAKIG-EIAGQ-KLLDLEPDHGAHYVLLSNMLA 561
              + + W  L+ A   +  AK   +I  Q +L ++ P+     + LSN+L+
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE----ITLSNVLS 374


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/716 (35%), Positives = 400/716 (55%), Gaps = 48/716 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRI-L 64
           +L  +L+ C   K+LKQ   IH  I+  G   +      L+  ++    K GL    I +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYS----KCGLAIDAIGV 371

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  I  P+I +W+ L+    +    +E++ L+  ++  G   PN +T   +L++     +
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTGN 430

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  IH  + K+G E D+ + NAL+  Y   G +++  K++E  + RDL+S+N  ++G
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
                     L +F  M +    P+ +TF+++  +C+ L D   G+Q HA + KN   + 
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ--LD 548

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            N  + TA+I+MYAKC  +                                E A   F++
Sbjct: 549 DNNFVCTALIDMYAKCMYL--------------------------------EDADVAFNR 576

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  RDL +WT +I+ Y+Q     +AL  F +M+  G+ P+E T+   L  C  L +L+ G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           ++LH    ++     ++F+ +A++DMYAKCG ++ A ++F  + +  +    +N+II G 
Sbjct: 637 QQLHSMVFKSGHVS-DMFVGSALVDMYAKCGCMEEAEALFEALIR--RDTIAWNTIICGY 693

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           AQ+G G  ++  FR M   G+ PDGVTF  +L ACSH GLVEEGK+ F SM  ++GI P 
Sbjct: 694 AQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPT 753

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           ++H  CMVD+L R G+ DE    IQ M    N++IW  +L A ++H N  +GE A  KL 
Sbjct: 754 VDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLF 813

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L+P+  + Y+LLSN+ A   RW++ ++VR LM   G++K PG S++E NG +H F++  
Sbjct: 814 ELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHD 873

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SHPQ +EI L L ++  +L S  YVP T  V+ +V E EK+  + +HSE+LAL F LI+
Sbjct: 874 YSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIS 933

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + S++ IRI KNLRIC DCH   K +S I  +EI+VRD  RFH FK G CSC DFW
Sbjct: 934 TSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 157/618 (25%), Positives = 280/618 (45%), Gaps = 80/618 (12%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLN--HHISSSQLISFFALSGCKNGLF 59
           K+ +  +SS+L    S +SL  A  IHG IV   +N   H+  S L++ +A   C+   +
Sbjct: 109 KKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVS-LVNVYA--KCRYSAY 165

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R++ +++ + ++  W  L++G        +++ L+  M ++GI+ PN FT    L +C
Sbjct: 166 -ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIM-PNEFTLATGLKAC 223

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           +   +   G Q+H    K GL  DLF+ +AL+  Y+  G I  A K+F G   ++ V++N
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF-------------------------- 213
            L+NGYAQ  +    L LF  M +  ++ + FT                           
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 214 ------------VAMFSACTELNDP----RIGKQFHAVVYKNL-GCVGSN---------- 246
                       V M+S C    D     +  K+   VV+  L  C+             
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 247 --MLLKTAVINMYAKCGLMNMAERVFS------------TMGMSKSTAAWSSMISGYTRE 292
             M L   + N Y  C L++ A    +              G     A  +++++ Y + 
Sbjct: 404 HLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN 463

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +    +L++ M  RDL+SW A +SG    G + + L +F  M   G  P+  T +++L
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISIL 523

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            +C  L  + +G+++H   I+N +   N F+ TA+IDMYAKC  ++ A   F ++  +++
Sbjct: 524 GSCSCLFDVHYGRQVHAHIIKNQLDDNN-FVCTALIDMYAKCMYLEDADVAFNRL--SVR 580

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            +  +  II+  AQ   GE ++  FR+M+  G+KP+  T    L  CS    +E G+Q  
Sbjct: 581 DLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLH 640

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
             +   G    M     +VD+ A+ G ++EA  L +++    +++ W  ++     +   
Sbjct: 641 SMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQG 699

Query: 533 KIGEIAGQKLLD--LEPD 548
                A + +LD  + PD
Sbjct: 700 NKALTAFRMMLDEGISPD 717


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/699 (36%), Positives = 397/699 (56%), Gaps = 42/699 (6%)

Query: 22  KQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           K   Q++ Q++ SGL  H     +I F         +  +   F ++  P+I +WN +++
Sbjct: 1   KHLDQVYVQLIVSGL--HKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK 58

Query: 82  GYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
           GY++ +     + +Y  M +S+  V PN FTF +VL +C   S    G QIH    K+G 
Sbjct: 59  GYTQKNIVDAPIRMYMDMQISQ--VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF 116

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
             ++F++N+L+  Y+ FG I+ A  VF+    R +VS+ ++I+GY Q  +P  AL +F++
Sbjct: 117 GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 176

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M+   ++PD    V++ +A T + D   GK  H +V K                      
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTK---------------------- 214

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
                       +G+        S+ + Y + G +E AR  F++M++ +L+ W AMISGY
Sbjct: 215 ------------LGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGY 262

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +  G   +A++LF +M +  I  D +TM + + A   +G+L+  + L   YI    +  +
Sbjct: 263 ANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWL-DGYISKSEYRDD 321

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
            F+ T +IDMYAKCGSI  A  VF ++    K V L++ +I G   HG G+ +I ++ EM
Sbjct: 322 TFVNTGLIDMYAKCGSIYLARCVFDRVAD--KDVVLWSVMIMGYGLHGHGQEAICLYNEM 379

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
           +  G+ P+  TF+ +L AC + GLV+EG + F  M ++GI+P  +HY C+VDLL R G L
Sbjct: 380 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYL 439

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
           ++AY  I SMP      +W ALL+AC++HR  ++GEIA ++L  L+P +  HYV LSN+ 
Sbjct: 440 NQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLY 499

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           A  + W     VR +M   G+ K  G S IE NG L  F    +SHP++KEI   L  + 
Sbjct: 500 ASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLE 559

Query: 621 MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
            +LK+AGYVP+   V+ D++ EE E  + +HSE+LA+A+G+I++    T+RITKNLR C 
Sbjct: 560 KRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACI 619

Query: 681 DCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +CH A KL+S++  REI++RDA RFH FK G CSC DFW
Sbjct: 620 NCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/650 (40%), Positives = 380/650 (58%), Gaps = 38/650 (5%)

Query: 100 LSKGIVSPN---NFTF--PFVLN----SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
           ++  I +PN   NF+   P +L+    SC      K   Q+H   IK G   D      +
Sbjct: 1   MNSTIYNPNRTLNFSPQPPLILSKPFTSCKTPRDLK---QLHAIFIKTGQIQDPLTAAEV 57

Query: 151 IHFYSIFGY-INNAHKVFEGSLARDLVSYNTLINGYAQVKEP---CPALWLFRKMQ-DSC 205
           I F +     I+ A  VF      +   +NT++   A+  +      AL LF  M  D  
Sbjct: 58  IKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGR 117

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P+ FTF ++  AC   +  R GKQ H ++ K  G    +  + + ++ MY  C +M  
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVK-FG-FHEDEFVISNLVRMYVMCAVMED 175

Query: 266 AERVFST----------MGMSK-----STAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           A  +F            M + K     +   W+ MI G  R G I+ A+ LFD+M  R +
Sbjct: 176 AYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSV 235

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW  MISGY+Q G F +A+ LF +M+S  I P+ VT+V+VL A   +GAL+ GK +H  
Sbjct: 236 VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
             +N V   ++ L +A++DMY+KCGSID AL VF  +PK  +    +++II   A HG  
Sbjct: 296 AGKNKVEIDDV-LGSALVDMYSKCGSIDKALQVFETLPK--RNAITWSAIIGAFAMHGRA 352

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGC 489
           E +I  F  M   G+ P+ V ++ +L ACSH GLVEEG+ FF  M+   G++P++EHYGC
Sbjct: 353 EDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC 412

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R G L+EA  LI++MP + + VIW+ALL AC++H+N K+GE   + L++L P  
Sbjct: 413 MVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHD 472

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YV LSN+ A    WE   +VR  M    I+K PG S+IE +G +H FL    SH + 
Sbjct: 473 SGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKA 532

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           KEI+ ML +M+MKL+S GY PNT++V  + DE+E+   + YHSEK+A+AFGLI++  +  
Sbjct: 533 KEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHP 592

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++I KNLRIC DCH + KL+S IY+R+I+VRD  RFH F+ G+CSCMD+W
Sbjct: 593 LKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/659 (40%), Positives = 373/659 (56%), Gaps = 79/659 (11%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSI-----FGYINNAHKVFEGSLARDLVSYNTLING 184
           Q+H   +K  +    F+ + L+  YS       GY   A  +F+    R L+ +NT+I  
Sbjct: 31  QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGY---ARSIFDRIQRRSLIHWNTIIKC 87

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y + +     + LF ++    + PD FT   +   C  L   + GKQ H +  K +G  G
Sbjct: 88  YVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALK-IG-FG 144

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG----------- 293
           S++ ++ +++NMY+KCG ++ A +VF  M + K    W+S+I GY R G           
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 294 --------------------KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
                               K+E AR+LFDQM  R+LVSW AMI+GY + G F  ALELF
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 334 GKME-------------------------------SLGIHPDEVTMVAVLRACVGLGALD 362
            +M                                 LG  P   T+V+VL A  GL  L 
Sbjct: 264 YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG 323

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G+ +H  Y+E   F  +  L T++I+MYAKCG I++AL+VF  I K  K V  + +II 
Sbjct: 324 KGRWIHS-YMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQK--KKVGHWTAIIV 380

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           GL  HG+   ++A+F EM   GLKP+ + F+ VL AC+H GLV++G+Q+F+ M+N Y I+
Sbjct: 381 GLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIE 440

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P +EHYGC+VD+L R G L+EA   I++MP   N VIW +LL   R H    IGE A Q+
Sbjct: 441 PTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQR 500

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           ++++ P+    Y+LLSNM A +  WE+   VR++M   G +K PG S +EH GTLH F+ 
Sbjct: 501 VIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIV 560

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD-EEEKETVVSYHSEKLALAFG 660
              SHPQTKEI   + +M  KLK  G+VP+T QV+  ++ E+EKE  +  HSE+LA+AFG
Sbjct: 561 GDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFG 620

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LIN +    IRI KNLR+C DCH   KLLS+IY REI+VRD  RFH FK G+CSCMD+W
Sbjct: 621 LINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/709 (36%), Positives = 405/709 (57%), Gaps = 49/709 (6%)

Query: 51  LSGCKNG--LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN 108
           LSG   G  L  +  +F ++  P+   W  ++ GY++    + A+ ++  M+S   V P 
Sbjct: 86  LSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDD-VPPT 144

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS----------IF- 157
            FT   VL SCA +     G ++H  ++K GL   + + N+L++ Y+          +F 
Sbjct: 145 QFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFD 204

Query: 158 --------------------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                               G ++ A   FE  + RD+VS+N +I+GY Q      AL +
Sbjct: 205 RMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDI 264

Query: 198 FRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV----YKNLGCVGSNMLLKTA 252
           F KM  DS  +PD FT  +  SAC  L + ++GKQ HA +    +   G VG+      A
Sbjct: 265 FSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGN------A 318

Query: 253 VINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           +I+MY+K G + +A+++     +S     A+++++ GY + G I  AR++FD +  RD+V
Sbjct: 319 LISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVV 378

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           +WTAMI GY Q G    A+ELF  M   G  P+  T+  +L     L +LD G+++H   
Sbjct: 379 AWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASA 438

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
             +     ++ ++ A+I MYAK GSI+ A  VF  I     T++ + S+I  LAQHGLGE
Sbjct: 439 TRSG-NASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTIT-WTSMIIALAQHGLGE 496

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            ++ +F  M   G+KPD +T+V VL AC+H GLVE+G+ ++  M N + I P   HY CM
Sbjct: 497 EALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACM 556

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           +DL  R G L EA+  I++MP + + + W +LLA+C++H+N ++ E+A ++LL +EP++ 
Sbjct: 557 IDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENS 616

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
             Y  L+N+ +   +WE A  +RK M D G++K  G+S+++    +H F      HPQ  
Sbjct: 617 GAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRD 676

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
            I  M+  +  ++K  G+VP+T  V+ D++EE KE ++S+HSEKLA+AFGLI +    T+
Sbjct: 677 AIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTL 736

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RI KNLR+C DCH A K +S++  REI+VRDA RFH FK G CSC D+W
Sbjct: 737 RIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 253/523 (48%), Gaps = 72/523 (13%)

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
           S+ + SP++    F+  S      F +G  IH  IIK GL   +F+ N L++FY+  G+I
Sbjct: 6   SQILTSPSDPYTSFLQRSLKFKDPF-TGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFI 64

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYA-------------QVKEPCPALW----------- 196
            +AH+VF+    + + S+N +++GYA             ++ EP    W           
Sbjct: 65  YDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMG 124

Query: 197 -------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
                  +FR+M    + P  FT   + ++C  +    IG++ H+ V K+   + S + +
Sbjct: 125 QFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKH--GLSSYISV 182

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             +++NMYAK G    A+ VF  M + KST++W++MIS + + G ++ A+  F+QM +RD
Sbjct: 183 ANSLLNMYAKSGDPVTAKIVFDRMKL-KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERD 241

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +VSW AMISGY+Q G   +AL++F KM       PD+ T+ + L AC  L  L  GK++H
Sbjct: 242 VVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIH 301

Query: 369 QQYI--------------------------------ENVVFGRNIFLTTAVIDMYAKCGS 396
              I                                ++++   ++   TA++D Y K G 
Sbjct: 302 AHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGD 361

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           I+ A  +F  +   ++ V  + ++I G  Q+G  + ++ +FR M   G KP+  T  T+L
Sbjct: 362 INPARRIFDSL--RVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATML 419

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
              S    ++ G+Q   S    G    +     ++ + A+ G +++A  +   + +  ++
Sbjct: 420 SVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDT 479

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAHYVLLS 557
           + W +++ A   H   +      +++L+  ++PDH  +  +LS
Sbjct: 480 ITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/621 (42%), Positives = 384/621 (61%), Gaps = 22/621 (3%)

Query: 113 PFVLNSCARLSSFKSGC-------QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           PF  +  +RL S    C       Q H  +I   L       N L+   +    ++ AHK
Sbjct: 10  PFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC-ASLSYAHK 68

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPC-PALWLFRKM-QDSCIQPDAFTFVAMFSACTEL 223
           +F+     DL  YNT+I  ++     C  +L +FR + QD  + P+ ++FV  FSAC   
Sbjct: 69  LFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNG 128

Query: 224 NDPRIGKQ--FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
              + G+Q   HAV    +G + +N+ +  A+I MY K GL+  +++VF    + +   +
Sbjct: 129 LGVQEGEQVRIHAV---KVG-LENNVFVVNALIGMYGKWGLVGESQKVFQ-WAVDRDLYS 183

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W+++I+ Y   G +  A++LFD M +RD+VSW+ +I+GY QVG F +AL+ F KM  +G 
Sbjct: 184 WNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGP 243

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+E T+V+ L AC  L ALD GK +H  YI       N  L  ++IDMYAKCG I++A 
Sbjct: 244 KPNEYTLVSALAACSNLVALDQGKWIHA-YIGKGEIKMNERLLASIIDMYAKCGEIESAS 302

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF++  K  + V L+N++I G A HG+   +I VF +M++  + P+ VTF+ +L ACSH
Sbjct: 303 RVFFE-HKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSH 361

Query: 462 GGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           G +VEEGK +F  M+ +Y I P++EHYGCMVDLL+R G L EA  +I SMP   +  IW 
Sbjct: 362 GYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWG 421

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           ALL ACR++++ + G   G+ +  ++P+H   +VLLSN+ + + RW EAR +R+  + S 
Sbjct: 422 ALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISR 481

Query: 581 IQKP-PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
            +K  PG S IE  GT H+FL   +SHPQ++EI   L +MT KLKSAGYVP   +++ D+
Sbjct: 482 DRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDI 541

Query: 640 DEEE-KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           D+EE KET +S HSEKLA+AFGL+N+ +   IRI KNLR+CGDCH A K +S++Y R I+
Sbjct: 542 DDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVII 601

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD  R+H F+ G CSC D+W
Sbjct: 602 VRDRTRYHHFEDGICSCKDYW 622



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 208/434 (47%), Gaps = 70/434 (16%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S L++L++SCKS++Q  Q H Q++ + L +H +S+++L+    L+ C + L  +  LF 
Sbjct: 16  YSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLK---LAACAS-LSYAHKLFD 71

Query: 67  QIDNPNIFIWNTLMRGYSRSD-SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           QI  P++FI+NT+++ +S S  S   +L+++ S+     + PN ++F F  ++C      
Sbjct: 72  QIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGV 131

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL---- 181
           + G Q+  H +K GLE ++F+ NALI  Y  +G +  + KVF+ ++ RDL S+NTL    
Sbjct: 132 QEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAY 191

Query: 182 ---------------------------INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
                                      I GY QV     AL  F KM     +P+ +T V
Sbjct: 192 VGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLV 251

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           +  +AC+ L     GK  HA + K  G +  N  L  ++I+MYAKCG +  A RVF    
Sbjct: 252 SALAACSNLVALDQGKWIHAYIGK--GEIKMNERLLASIIDMYAKCGEIESASRVFFEHK 309

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
           + +    W++MI G+   G    A  +F+QM                             
Sbjct: 310 VKQKVWLWNAMIGGFAMHGMPNEAINVFEQM----------------------------- 340

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           K+E   I P++VT +A+L AC     ++ GK   +  + +      I     ++D+ ++ 
Sbjct: 341 KVEK--ISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRS 398

Query: 395 GSIDTALSVFYKIP 408
           G +  A  +   +P
Sbjct: 399 GLLKEAEDMISSMP 412



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 145/301 (48%), Gaps = 9/301 (2%)

Query: 41  SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
           S + LI+ +  SG    +  ++ LF  +   ++  W+T++ GY +     EAL  +  ML
Sbjct: 183 SWNTLIAAYVGSG---NMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKML 239

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
             G   PN +T    L +C+ L +   G  IH +I K  ++ +  +  ++I  Y+  G I
Sbjct: 240 QIG-PKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEI 298

Query: 161 NNAHKV-FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
            +A +V FE  + + +  +N +I G+A    P  A+ +F +M+   I P+  TF+A+ +A
Sbjct: 299 ESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNA 358

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C+       GK +  ++  +   +   +     ++++ ++ GL+  AE + S+M M+   
Sbjct: 359 CSHGYMVEEGKLYFRLMVSDYA-ITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDV 417

Query: 280 AAWSSMISGYTREGKIERAR---QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           A W ++++       +ER     ++   MD   +     + + YS  G +++A  L  K 
Sbjct: 418 AIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKN 477

Query: 337 E 337
           E
Sbjct: 478 E 478


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/779 (35%), Positives = 418/779 (53%), Gaps = 79/779 (10%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L++C   + L    ++HG  V +G       ++ L+  +A  G    L  SR LF  I
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL---LDDSRRLFGGI 143

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+  WN L   Y +S+   EA+ L+  M+  GI+ PN F+   +LN+CA L     G
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM-PNEFSISIILNACAGLQEGDLG 202

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  ++K GL+ D F  NAL+  YS  G I  A  VF+     D+VS+N +I G    
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN------LGC 242
                AL L  +M+ S  +P+ FT  +   AC  +    +G+Q H+ + K          
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 243 VG-----------------------SNMLLKTAVINMYAKCGLMNMAERVFSTM------ 273
           VG                        +++   A+I+ Y++CG    A  +FS M      
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDID 382

Query: 274 --------------------------------GMSKSTAAWSSMISGYTREGKIERARQL 301
                                           G+       +S++  Y +   I+ A ++
Sbjct: 383 FNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKI 442

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F++    DLV++T+MI+ YSQ G   +AL+L+ +M+   I PD     ++L AC  L A 
Sbjct: 443 FEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAY 502

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           + GK+LH   I+   F  +IF + ++++MYAKCGSI+ A   F +IP   + +  ++++I
Sbjct: 503 EQGKQLHVHAIK-FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPN--RGIVSWSAMI 559

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
            G AQHG G+ ++ +F +M   G+ P+ +T V+VLCAC+H GLV EGKQ+FE M + +GI
Sbjct: 560 GGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGI 619

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           KP  EHY CM+DLL R G+L+EA  L+ S+P++A+  +W ALL A R+H+N ++G+ A +
Sbjct: 620 KPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAK 679

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            L DLEP+    +VLL+N+ A    WE   +VRK M DS ++K PG S+IE    ++ F+
Sbjct: 680 MLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFI 739

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              +SH ++ EI   L  +   L  AGY       + +VD+ EKE ++ +HSEKLA+AFG
Sbjct: 740 VGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFG 799

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI +     IR+ KNLRIC DCH  FK + +I  REI+VRD  RFH FK G+CSC D+W
Sbjct: 800 LIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 265/554 (47%), Gaps = 52/554 (9%)

Query: 25  LQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           +++H  ++  G +   S  + L++ +  S C+   + +R L  +    ++  W++L+ GY
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLY--SKCRRFGY-ARKLVDESSELDVVSWSSLLSGY 57

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
            ++   +EAL+++  M   G V  N FTFP VL +C+       G ++H   +  G E D
Sbjct: 58  VQNGFVEEALLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESD 116

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
            F+ N L+  Y+  G ++++ ++F G + R++VS+N L + Y Q +    A+ LF++M  
Sbjct: 117 GFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVR 176

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           S I P+ F+   + +AC  L +  +G++ H ++ K                         
Sbjct: 177 SGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLK------------------------- 211

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                    MG+     + ++++  Y++ G+IE A  +F  +   D+VSW A+I+G    
Sbjct: 212 ---------MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
                AL L  +M+  G  P+  T+ + L+AC  +G  + G++LH   I+      ++F 
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHS-DLFA 321

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
              ++DMY+KC  +D A   +  +PK  K +  +N++ISG +Q G    ++++F +M   
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPK--KDIIAWNALISGYSQCGDHLDAVSLFSKMFSE 379

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
            +  +  T  TVL + +    ++  KQ     +  GI         ++D   +   +DEA
Sbjct: 380 DIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEA 439

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL-----DLEPDHGAHYVLLSN 558
             + +   ++ + V + +++ A   + +   GE A +  L     D++PD      LL N
Sbjct: 440 SKIFEERTWE-DLVAYTSMITAYSQYGD---GEEALKLYLQMQDADIKPDPFICSSLL-N 494

Query: 559 MLAETYRWEEARQV 572
             A    +E+ +Q+
Sbjct: 495 ACANLSAYEQGKQL 508


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/782 (34%), Positives = 431/782 (55%), Gaps = 80/782 (10%)

Query: 10  SLLALLESCKSLKQAL---QIHGQIVHSGLNHH---ISSSQLISFFALSGCKNGLFRSRI 63
           +L+ +L+ C S+   +   Q+HG  +  G +     + +S +  +       +G    R 
Sbjct: 105 ALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDG----RK 160

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   N+  W +L+ GY +  +  + + L+  M ++G V PN+ TF  VL+  A   
Sbjct: 161 VFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEG-VWPNSVTFASVLSVVASQG 219

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G ++H   +KFG    +F+ N+L++ Y+  G +  A  VF G   RD+VS+NTL+ 
Sbjct: 220 MVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMA 279

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV------- 236
           G         AL LF   + S       T+  +   C  +    + +Q H+ V       
Sbjct: 280 GLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHS 339

Query: 237 -----------YKNLGCVGS------------NMLLKTAVINMYAKCGLMNMAERVFSTM 273
                      Y   G +G+            N++  TA+IN   + G + +A  +FS M
Sbjct: 340 YGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399

Query: 274 ---GMSKSTAAWSSMISG-------------------------------YTREGKIERAR 299
              G++ +   +S++++                                Y++    E A 
Sbjct: 400 REDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEAL 459

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F  +DQ+D+VSW+AM++ Y+Q G    A  +F KM   G+ P+E T+ +V+ AC    
Sbjct: 460 SIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPT 519

Query: 360 A-LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           A +D G++ H   I++      + +++A++ MYA+ GSI++A  +F +  +  + +  +N
Sbjct: 520 AGVDLGRQFHAISIKHRCHDA-LCVSSALVSMYARKGSIESAQCIFER--QTDRDLVSWN 576

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
           S++SG AQHG  + ++ VFR+ME  G++ DGVTF++V+  C+H GLVEEG+++F+SM  +
Sbjct: 577 SMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARD 636

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           YGI P MEHY CMVDL +R G+LDEA  LI+ M + A  ++WR LL AC++H+N ++G++
Sbjct: 637 YGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKL 696

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A +KLL LEP   A YVLLSN+ +   +W+E  +VRKLMD   ++K  G S+I+    +H
Sbjct: 697 AAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVH 756

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+AS KSHP +++I   L+ MT KLK  GY P+T   + +V EE+KE +++ HSE+LAL
Sbjct: 757 SFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLAL 816

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI +     + I KNLR+CGDCH   K++S+I  REI++RD  RFH F  G CSC D
Sbjct: 817 AFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGD 876

Query: 718 FW 719
           FW
Sbjct: 877 FW 878



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 10/253 (3%)

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
           S+ST A S  +   T       ARQ FD++  R+ +     +  +++ G   QAL+ F  
Sbjct: 35  SQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTLDHA--LFDHARRGSVHQALDHF-- 90

Query: 336 MESLGIHPDEV---TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           ++    H   V    +V VL+ C  +     GK+LH   I       ++ + T+++DMY 
Sbjct: 91  LDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYM 150

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           K  S+     VF  +PK  + V  + S+++G  Q G     + +F  M   G+ P+ VTF
Sbjct: 151 KWHSVVDGRKVFEAMPK--RNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTF 208

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            +VL   +  G+V+ G++     + +G    +     ++++ A+ G ++EA  +   M  
Sbjct: 209 ASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGME- 267

Query: 513 DANSVIWRALLAA 525
             + V W  L+A 
Sbjct: 268 TRDMVSWNTLMAG 280


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 267/726 (36%), Positives = 406/726 (55%), Gaps = 54/726 (7%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQ--IDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           I+ + LI+ ++  G    L  +R +F++  +D  +   +N ++ GYS  +    A+ L+ 
Sbjct: 80  IARTTLITAYSALG---NLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFR 136

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-QIHCHIIKFGLEFDLFIRNALIHFYS- 155
           +M       P++FTF  VL++   +   +  C Q+H  ++KFG+E    + NAL+  Y  
Sbjct: 137 AMRWANF-QPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVK 195

Query: 156 ----------------------------------IFGYINN-----AHKVFEGSLARDLV 176
                                             I GY+ N     A ++ +    +  +
Sbjct: 196 CASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGI 255

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N +I+GY        AL LFRKM+   +Q D  T+ ++ SAC +     +GKQ HA +
Sbjct: 256 AWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYI 315

Query: 237 YKNLGCVGSNMLLKTA--VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            KN      + LL     +I +Y K G ++ A ++F  M + K    W++++SGY   G+
Sbjct: 316 LKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV-KDIITWNTLLSGYVNAGR 374

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +E A+  F QM +++L++WT MISG +Q G   QAL+LF +M+  G  P++      + A
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  LGAL+ G++LH Q I ++     + +  A+I MYA+CG ++ A ++F  +P  +  V
Sbjct: 435 CSVLGALENGRQLHAQ-IVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPV 492

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
           S +NS+I+ L QHG G  +I ++ +M   G+ PD  TF+TVL ACSH GLVEEG ++F S
Sbjct: 493 S-WNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNS 551

Query: 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           ML NYGI P  +HY  M+DL  R G+  +A  +I SMP++A + IW ALLA CR H N  
Sbjct: 552 MLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMD 611

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G  A +KL  L P H   YVLLSNM A   RW +  + RKLM D G++K P  S+ E  
Sbjct: 612 LGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVE 671

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H FL     HP+   I   L+ + +++K  GY+P+T  V+ D++ E KE  +S HSE
Sbjct: 672 NKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSE 731

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGL+      T+R+ KNLRICGDCH A K +S++  REI+VRD  RFH FK G C
Sbjct: 732 KLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGEC 791

Query: 714 SCMDFW 719
           SC ++W
Sbjct: 792 SCRNYW 797



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 237/493 (48%), Gaps = 58/493 (11%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D+  R  LI  YS  G +  A ++F  +    RD V YN +I GY+ + +   A+ LFR 
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 201 MQDSCIQPDAFTFVAMFSACTEL-NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           M+ +  QPD FTF ++ SA T +  D R   Q H  V K    +   +L   A++++Y K
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVL--NALLSVYVK 195

Query: 260 CG---------LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           C          LM  A ++F  M   ++   W+++I+GY R G +  AR++ D M ++  
Sbjct: 196 CASSPLVSSSSLMASARKLFDEMP-KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPG 254

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           ++W AMISGY   G F  AL LF KM  LG+  DE T  +V+ AC   G    GK++H  
Sbjct: 255 IAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314

Query: 371 YIENVVFGRNIFLTT---AVIDMYAKCGSIDTALSVFYKIP------------------- 408
            ++N +     FL +    +I +Y K G +D A  +FY++P                   
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374

Query: 409 -------------KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
                        KNL T ++   +ISGLAQ+G GE ++ +F +M+L G +P+   F   
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTV---MISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGA 431

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           + ACS  G +E G+Q    +++ G    +     M+ + AR G ++ A  +  +MP+  +
Sbjct: 432 ITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VD 490

Query: 516 SVIWRALLAACRLH-RNAKIGEIAGQKLLD-LEPDHGAHYVLLSNMLAETYRWEEARQVR 573
            V W +++AA   H    K  E+  Q L + + PD      +LS         E  R   
Sbjct: 491 PVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFN 550

Query: 574 KLMDDSGIQKPPG 586
            ++++ GI   PG
Sbjct: 551 SMLENYGI--APG 561



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 199/480 (41%), Gaps = 109/480 (22%)

Query: 22  KQALQIHGQIVHSG-------LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           +Q  Q+HG +V  G       LN  +S     +   L    + +  +R LF ++   N F
Sbjct: 165 RQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEF 224

Query: 75  IWNTLMRGYSR--------------SDSP-----------------QEALVLYTSMLSKG 103
           IW TL+ GY R              ++ P                 ++AL L+  M   G
Sbjct: 225 IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL----EFDLFIRNALIHFYSIFGY 159
            V  +  T+  V+++CA    F  G Q+H +I+K  L    +F L + N LI  Y  +G 
Sbjct: 285 -VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGK 343

Query: 160 INNAHKVFEGSLARDLVSYNTLINGY-------------AQVKEPCPALW---------- 196
           ++ A K+F     +D++++NTL++GY             AQ+ E     W          
Sbjct: 344 VDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQN 403

Query: 197 --------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                   LF +M+    +P+ + F    +AC+ L     G+Q HA +  +LG   S + 
Sbjct: 404 GFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIV-HLGH-DSTLS 461

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  A+I MYA+CG++  A  +F TM       +W+SMI+   + G   +A +L++QM + 
Sbjct: 462 VGNAMITMYARCGIVEAARTMFLTMPFVDPV-SWNSMIAALGQHGHGVKAIELYEQMLKE 520

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          GI PD  T + VL AC   G ++ G R  
Sbjct: 521 -------------------------------GILPDRRTFLTVLSACSHAGLVEEGNRYF 549

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +EN            +ID++ + G    A +V   +P   +   ++ ++++G   HG
Sbjct: 550 NSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARA-PIWEALLAGCRTHG 608



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 153/356 (42%), Gaps = 46/356 (12%)

Query: 26  QIHGQIVHSGLNHHIS-----SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           Q+H  I+ + LN          + LI+ +   G  +G   +R +F ++   +I  WNTL+
Sbjct: 310 QVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDG---ARKIFYEMPVKDIITWNTLL 366

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVS------------------------------PNNF 110
            GY  +   +EA   +  M  K +++                              PN++
Sbjct: 367 SGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDY 426

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
            F   + +C+ L + ++G Q+H  I+  G +  L + NA+I  Y+  G +  A  +F   
Sbjct: 427 AFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTM 486

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
              D VS+N++I    Q      A+ L+ +M    I PD  TF+ + SAC+       G 
Sbjct: 487 PFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGN 546

Query: 231 QFHAVVYKNLGCV-GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           ++   + +N G   G +   +  +I+++ + G  + A+ V  +M        W ++++G 
Sbjct: 547 RYFNSMLENYGIAPGEDHYAR--MIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGC 604

Query: 290 TREGK----IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
              G     IE A +LF  + Q D  ++  + + Y+ +G ++        M   G+
Sbjct: 605 RTHGNMDLGIEAAEKLFKLIPQHD-GTYVLLSNMYASLGRWNDVARTRKLMRDRGV 659



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 20  SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           +L+   Q+H QIVH G +  +S  + +I+ +A  G       +R +F  +   +   WN+
Sbjct: 440 ALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEA---ARTMFLTMPFVDPVSWNS 496

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           ++    +     +A+ LY  ML +GI+ P+  TF  VL++C+     + G
Sbjct: 497 MIAALGQHGHGVKAIELYEQMLKEGIL-PDRRTFLTVLSACSHAGLVEEG 545


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 283/749 (37%), Positives = 410/749 (54%), Gaps = 95/749 (12%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEA---LVLYTSMLSKGIVSPNNFTFPF 114
           L R+  LF QI +P++  +N L+R YS S SP  A   L LY  ML +  V+PNN+TFPF
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRML-RHRVAPNNYTFPF 130

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            L +C+ L+    G  IH H I  GL+ DLF+  AL+  Y     + +A  +F    ARD
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 175 LVSYNTLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           LV++N ++ GYA   +     A  L  +MQ   ++P+A T VA+     +      G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 233 HAVVYKNLGCVGSN----------MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           HA  Y+   C+ SN          +LL TA+++MYAKCG +  A RVF  M  +++   W
Sbjct: 251 HA--YRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP-ARNEVTW 307

Query: 283 SSMISGYTREGKIERARQLFDQMDQR---------------------------------- 308
           S++I G+    ++ +A  LF  M  +                                  
Sbjct: 308 SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLA 367

Query: 309 ------DLVSWTAMISGYSQVGGFSQALELFG---------------------------- 334
                 DL +  +++S Y++ G   QA+ LF                             
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 335 ---KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
              KM++  + PD  TMV+++ AC  L AL  G+  H   I   +      +  A+IDMY
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL-ASETSICNALIDMY 486

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKCG ID +  VF  +P   + +  +N++I+G   HGLG+ + A+F EM  +G  PDGVT
Sbjct: 487 AKCGRIDLSRQVFNMMPS--RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVT 544

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+ +L ACSH GLV EGK +F  M + YG+ P+MEHY CMVDLL+R G LDEAY  IQSM
Sbjct: 545 FICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM 604

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P  A+  +W ALL ACR+++N  +G+   + + +L P+   ++VLLSN+ +   R++EA 
Sbjct: 605 PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAA 664

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VR +    G +K PG S+IE NG+LH F+   +SHPQ+ EI   L ++ + +K  GY P
Sbjct: 665 EVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQP 724

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +T  V+ D++EEEKE  +  HSEKLA+A+G+++    +TI +TKNLR+CGDCH   K +S
Sbjct: 725 DTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHIS 784

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + RR I+VRDA RFH FK G CSC DFW
Sbjct: 785 LLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 180/408 (44%), Gaps = 55/408 (13%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA--LWLFRKMQDSCIQPDAFTFVA 215
           G+++ AH +F+   + D+ +YN LI  Y+       A  L L+R+M    + P+ +TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 216 MFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
              AC+ L D   G+  H   ++  L    +++ + TA+++MY KC  +  A  +F+TM 
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGL---QADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
            ++   AW++M++GY   G    A      M                             
Sbjct: 188 -ARDLVAWNAMLAGYAHHGMYHHAVAHLLSM----------------------------- 217

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-RN--------IFLTT 385
           +M+   + P+  T+VA+L      GAL  G  +H   I   +   RN        + L T
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGT 277

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG- 444
           A++DMYAKCGS+  A  VF  +P   +    ++++I G         +  +F+ M   G 
Sbjct: 278 ALLDMYAKCGSLLYARRVFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 445 --LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
             L P   +  + L AC+    +  G+Q    +   G+   +     ++ + A+ G +D+
Sbjct: 336 CFLSP--TSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQ 393

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL--LDLEPD 548
           A  L   M    ++V + AL++    +  A+   +  +K+   ++EPD
Sbjct: 394 AIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 18/246 (7%)

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA--LELFGKMESLGIHPDEVTMV 349
            G + RA  LFDQ+   D+ ++  +I  YS     + A  L L+ +M    + P+  T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
             L+AC  L     G+ +H+  I +     ++F++TA++DMY KC  +  A  +F  +P 
Sbjct: 130 FALKACSALADHHCGRAIHRHAI-HAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIA--VFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
             + +  +N++++G A HG+   ++A  +  +M++  L+P+  T V +L   +  G + +
Sbjct: 189 --RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 468 GKQFFESML------NYGIKPQMEH----YGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           G       +      N   K ++         ++D+ A+ G L  A  +  +MP   N V
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEV 305

Query: 518 IWRALL 523
            W AL+
Sbjct: 306 TWSALI 311


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 364/591 (61%), Gaps = 23/591 (3%)

Query: 41  SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
           +SS+LI+F A+S  ++  + + ILF+   NPN F WN  +RG+  S++P+EA+VLY  +L
Sbjct: 12  ASSRLIAFCAISEWRDLDYCTNILFNT-RNPNTFSWNVAIRGFLDSENPREAVVLYKRVL 70

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
                 P+N+T+P +  +CARLS  + G +I  H++  G + D+F+ NA+IH     G +
Sbjct: 71  QCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDL 130

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           + A K+F+ S  RDLVS+N++INGY +      AL  +R+M+   I+PD  T + + S+C
Sbjct: 131 DGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSC 190

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            +L D  +G++ H  + +N   +   + L  A+++MY KCG +  A ++F +M  +K+  
Sbjct: 191 AQLEDLDLGRESHCYIEEN--GLKLTVPLANALMDMYMKCGNLESARKLFDSM-TNKTMV 247

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           +W++M               LFD+M  +D+V W AMI GY       +AL LF +M+++ 
Sbjct: 248 SWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 292

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I+PDEVTMV+ L AC  LGALD G  +H  YIE      N+ L TA+IDMYAKCG I  A
Sbjct: 293 INPDEVTMVSCLSACSQLGALDVGIWIHH-YIEKHELSLNVALGTALIDMYAKCGKITKA 351

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
           + VF ++P   +    + +IISGLA HG    +IA F EM    + PD VTF+ +L AC 
Sbjct: 352 IQVFQELPG--RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACC 409

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           HGGLVEEG+++F  M + + + P+++HY CMVDLL R G L+EA  LI+SMP +A++V+W
Sbjct: 410 HGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVW 469

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
            AL  ACR+H N  +GE A  KLL ++P     YVLL+NM  E   W+EA + RKLM   
Sbjct: 470 GALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQR 529

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           G++K PG S IE NG ++ F+   KSHPQ+++I   L  +T +L+     P
Sbjct: 530 GVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTP 580


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 404/717 (56%), Gaps = 54/717 (7%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           + +  S K LKQ   +H  I+ + L     I  + LI+ +A   C++ L  +R  F ++ 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYAR--CRD-LELARKTFDEMG 121

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI--VSPNNFTFPFVLNSCARLSSFKS 127
              +  WN L+ GYSR+   + AL +Y  M+SK    + P+  TF   L +C+ +     
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +I    +  G   D  ++NALI+ YS  G + +A KVF+    RD++++NT+I+GYA+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL LF++M  +  +P+  TF+ + +ACT L D   G+  H  V ++     S++
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEH--GYESDL 299

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++   ++NMY KC                                  +E ARQ+F+++  
Sbjct: 300 VIGNVLLNMYTKCS-------------------------------SSLEEARQVFERLRT 328

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+++W  +I  Y Q G    AL++F +M+   + P+E+T+  VL AC  LGA   GK +
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 368 HQQYIENVVFGR---NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           H      +  GR   ++ L  ++++MY +CGS+D  + VF  I    K++  ++++I+  
Sbjct: 389 HAL----IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRD--KSLVSWSTLIAAY 442

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           AQHG   T +  F E+   GL  D VT V+ L ACSHGG+++EG Q F SM+ ++G+ P 
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPD 502

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
             H+ CMVDLL+R GRL+ A  LI  MP+  ++V W +LL+ C+LH + K       KL 
Sbjct: 503 YRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF 562

Query: 544 DLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           +LE  D  +   LLSN+ AE  RW++ R+ R   +    +K PG SYIE N T+H F+A 
Sbjct: 563 ELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAG 619

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            KSHP+ + I   +K ++ ++K AGYVP+   V+ +V EEEKE ++ YHSEKLA+A+GLI
Sbjct: 620 DKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLI 679

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++     + I KNLR C DCH A K +S I  R+I+VRD+ RFH F+ G+CSC D+W
Sbjct: 680 STPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/477 (26%), Positives = 236/477 (49%), Gaps = 44/477 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  I++PN   W  ++  ++R+   +EAL  Y  M+ +G+  P+   F   +  C+   
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGAMFVVAIGVCSSSK 72

Query: 124 SFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
             K G  +H  I++   LEFD+ +  ALI  Y+    +  A K F+    + LV++N LI
Sbjct: 73  DLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 183 NGYAQVKEPCPALWLFRKMQDSC---IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            GY++  +   AL +++ M       ++PDA TF +   AC+ + D   G++  A    +
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVAS 192

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                S+ +++ A+INMY+KCG +  A +VF  +  ++   AW++MISGY ++G      
Sbjct: 193 --GYASDSIVQNALINMYSKCGSLESARKVFDRL-KNRDVIAWNTMISGYAKQG------ 243

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                                      +QALELF +M      P+ VT + +L AC  L 
Sbjct: 244 -------------------------AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE 278

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDTALSVFYKIPKNLKTVSLFN 418
            L+ G+ +H++  E+  +  ++ +   +++MY KC  S++ A  VF ++    + V  +N
Sbjct: 279 DLEQGRAIHRKVKEH-GYESDLVIGNVLLNMYTKCSSSLEEARQVFERL--RTRDVITWN 335

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
            +I    Q+G  + ++ +F++M+L  + P+ +T   VL AC+  G   +GK     + + 
Sbjct: 336 ILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             K  +     ++++  R G LD+  G+  ++  D + V W  L+AA   H +++ G
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-RDKSLVSWSTLIAAYAQHGHSRTG 451



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 203/412 (49%), Gaps = 41/412 (9%)

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y   G + +A  VF      + VS+  ++  +A+      AL  +R+M    ++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           FV     C+   D + G+  HA++ +    +  +++L TA+I MYA+C  + +A + F  
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILET-QLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           MG  K+   W+++I+GY+R G    A +++  M                     S++ E 
Sbjct: 120 MG-KKTLVTWNALIAGYSRNGDHRGALKIYQDM--------------------VSKSPE- 157

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
                  G+ PD +T  + L AC  +G +  G+ +  + + +  +  +  +  A+I+MY+
Sbjct: 158 -------GMKPDAITFSSALYACSVVGDISQGREIEARTVAS-GYASDSIVQNALINMYS 209

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCGS+++A  VF ++ KN + V  +N++ISG A+ G    ++ +F+ M     KP+ VTF
Sbjct: 210 KCGSLESARKVFDRL-KN-RDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTF 267

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR-DGRLDEAYGLIQSMP 511
           + +L AC++   +E+G+     +  +G +  +     ++++  +    L+EA  + + + 
Sbjct: 268 IGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERL- 326

Query: 512 YDANSVIWRALLAACRLHRNAKIG-EIAGQ-KLLDLEPDHGAHYVLLSNMLA 561
              + + W  L+ A   +  AK   +I  Q +L ++ P+     + LSN+L+
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE----ITLSNVLS 374


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/625 (40%), Positives = 373/625 (59%), Gaps = 29/625 (4%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF--YSIFGYINNAHKVFEGSLAR 173
           + +C  +   K   Q+H  ++K G   D  I   ++     S F  I  A  VF+    R
Sbjct: 22  IKACKSMRELK---QVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 174 DLVSYNTLINGYAQVKEP-CPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
           +  ++NT+I   A+ ++    AL +F +M  ++ ++P+ FTF ++  AC  +     GKQ
Sbjct: 79  NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF---------------STMGMS 276
            H ++ K  G V    ++ T ++ MY  CG M  A  +F                  G  
Sbjct: 139 VHGLLLK-FGLVDDEFVV-TNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGRE 196

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
            +    + M+ GY R G ++ AR+LFD+M QR +VSW  MISGY+Q G + +A+E+F +M
Sbjct: 197 FNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRM 256

Query: 337 ESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
             +G + P+ VT+V+VL A   LG L+ GK +H  Y E      +  L +A++DMYAKCG
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHL-YAEKNKIRIDDVLGSALVDMYAKCG 315

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
           SI+ A+ VF ++P+N   V  +N++I GLA HG           ME  G+ P  VT++ +
Sbjct: 316 SIEKAIQVFERLPQN--NVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAI 373

Query: 456 LCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACSH GLV+EG+ FF  M+N  G+KP++EHYGCMVDLL R G L+EA  LI +MP   
Sbjct: 374 LSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKP 433

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           + VIW+ALL A ++H+N KIG  A + L+ + P     YV LSNM A +  W+    VR 
Sbjct: 434 DDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRL 493

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           +M D  I+K PG S+IE +G +H FL    SH + K+I  ML++++ KL   G++P+T Q
Sbjct: 494 MMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQ 553

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+  +DE+ KE+V+ YHSEK+A+AFGLI++  K  + I KNLRIC DCH + KL+S++Y 
Sbjct: 554 VLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYE 613

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           R+I++RD  RFH F+ G+CSCMD+W
Sbjct: 614 RKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 203/444 (45%), Gaps = 85/444 (19%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           +++CKS+++  Q+H  +V +G  H  + +++++   A S  ++ +  +  +F Q+   N 
Sbjct: 22  IKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRD-IGYALSVFDQLPERNC 80

Query: 74  FIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           F WNT++R  + + D   +AL+++  MLS+  V PN FTFP VL +CA ++    G Q+H
Sbjct: 81  FAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVH 140

Query: 133 CHIIKFGL-----------------------------------------------EFDLF 145
             ++KFGL                                               EF++ 
Sbjct: 141 GLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVV 200

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF-RKMQDS 204
           + N ++  Y+  G +  A ++F+    R +VS+N +I+GYAQ      A+ +F R MQ  
Sbjct: 201 LCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMG 260

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            + P+  T V++  A + L    +GK  H    KN   +  + +L +A+++MYAKCG + 
Sbjct: 261 DVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNK--IRIDDVLGSALVDMYAKCGSIE 318

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A +VF                                +++ Q ++++W A+I G +  G
Sbjct: 319 KAIQVF--------------------------------ERLPQNNVITWNAVIGGLAMHG 346

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
             +       +ME  GI P +VT +A+L AC   G +D G+      + +V     I   
Sbjct: 347 KANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHY 406

Query: 385 TAVIDMYAKCGSIDTALSVFYKIP 408
             ++D+  + G ++ A  +   +P
Sbjct: 407 GCMVDLLGRAGYLEEAEELILNMP 430



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 132/287 (45%), Gaps = 4/287 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   ++  WN ++ GY+++   +EA+ ++  M+  G V PN  T   VL + +
Sbjct: 218 ARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAIS 277

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           RL   + G  +H +  K  +  D  + +AL+  Y+  G I  A +VFE     +++++N 
Sbjct: 278 RLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNA 337

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A   +         +M+   I P   T++A+ SAC+       G+ F   +  ++
Sbjct: 338 VIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSV 397

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---R 297
           G +   +     ++++  + G +  AE +   M M      W +++        I+   R
Sbjct: 398 G-LKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMR 456

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           A ++  QM   D  ++ A+ + Y+  G +     +   M+ + I  D
Sbjct: 457 AAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKD 503


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/515 (44%), Positives = 337/515 (65%), Gaps = 7/515 (1%)

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P+ FT   +  AC  +     GKQ H  + K +G   S+++++TA+++MYA+CG +  
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIK-MG-FESDVVVQTALVHMYARCGSLED 63

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  VF  M   +ST  W++MI+G+ +   +++A +LF +M +RD+VSWTA+I+GY+Q G 
Sbjct: 64  AGHVFDKMS-ERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGY 122

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             ++L +F +M   G+  D   M +VL AC  L AL+ G++ H  Y+    F  +I + +
Sbjct: 123 GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHA-YVVQSGFALDIVVGS 181

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++DMYAK GS++ A  VF K+P+  +    +NSII+G AQHG G  ++ +F +M   G+
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQ--RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           KP+ ++FV VL ACSH GLV EG+ +F  M  NYGI P + HY CM+DLL R G LDEA 
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
             I  MP + +  +W ALL ACR+H N ++ +   + LL +E      YVLLSN+ A   
Sbjct: 300 NFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           +W++A +VRKLM D G+ K PG+S+IE    +H F+A + SHPQ KEI   L+ ++ K+K
Sbjct: 360 QWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMK 419

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
           +AGYVPN   V+ DV+++EKE  +S+HSEKLA+AFG+IN+    TIR+ KNLR+CGDCH 
Sbjct: 420 AAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHT 479

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             K +S  + R+I+VRDA RFH FK G CSC D+W
Sbjct: 480 VIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 67/383 (17%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           M+ KG V PN FT   V+ +CA ++S + G Q H +IIK G E D+ ++ AL+H Y+  G
Sbjct: 1   MVGKG-VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCG 59

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL-------------W--------- 196
            + +A  VF+    R   ++N +I G+AQ ++   AL             W         
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 197 ---------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                    +F +M+ + ++ D F   ++ SAC +L    +G+QFHA V ++      ++
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS--GFALDI 177

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++ +A+++MYAK G M  A +VF  M   ++  +W+S+I+G  + G+   A  LF+QM Q
Sbjct: 178 VVGSALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ 236

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                           GI P+E++ V VL AC   G ++ G+  
Sbjct: 237 -------------------------------AGIKPNEISFVGVLSACSHTGLVNEGRGY 265

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
                +N     ++   T +ID+  + G +D A +    +P     VS++ +++     H
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVE-PDVSVWGALLGACRIH 324

Query: 428 GLGETSIAVFREMELMGLKPDGV 450
           G  E +  +   +  M ++  G+
Sbjct: 325 GNTELAKRIAEHLLGMEVQIAGI 347



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 129/242 (53%), Gaps = 2/242 (0%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  W  ++ GY+++    E+L ++  M   G+ S + F    VL++CA L+
Sbjct: 98  LFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKS-DRFIMGSVLSACADLA 156

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G Q H ++++ G   D+ + +AL+  Y+  G + +A +VF+    R+ VS+N++I 
Sbjct: 157 ALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIIT 216

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G AQ      A+ LF +M  + I+P+  +FV + SAC+       G+ +  ++ +N G V
Sbjct: 217 GCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIV 276

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++   T +I++  + G ++ AE   + M +    + W +++      G  E A+++ +
Sbjct: 277 -PDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAE 335

Query: 304 QM 305
            +
Sbjct: 336 HL 337



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G+KP+  T  TV+ AC+    +E+GKQ    ++  G +  +     +V + AR G L++A
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAK 533
             +   M  + ++  W A++     +R+ K
Sbjct: 65  GHVFDKMS-ERSTRTWNAMITGHAQNRDMK 93


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/616 (42%), Positives = 378/616 (61%), Gaps = 23/616 (3%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY--SIFGYINNAHKVFEGSLAR 173
           L++C  L  F    +I   +I  G   D F  + L+ F   S F  ++ + ++F+     
Sbjct: 36  LHNCHNLKQFN---RILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENS 92

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +   +NT++  Y Q      AL L++ M  + + PD +T+  +  AC        GK+ H
Sbjct: 93  NGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIH 152

Query: 234 AVVYKNLGCVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
             V K    VG  S++ ++  +INMYA CG M  A ++F    +  S + W+S+++GY +
Sbjct: 153 DHVLK----VGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS-WNSILAGYVK 207

Query: 292 EG---KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           +G   ++  A +LF++MD++D+VSW+A+ISGY Q G + +AL +F +M + G+  DEV +
Sbjct: 208 KGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 267

Query: 349 VAVLRACVGLGALDFGKRLH----QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           V+VL AC  L  +  GK +H    +  IE+ V  +N  L     DMY KCG ++ AL VF
Sbjct: 268 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNA-LIHMYSDMYMKCGCVENALEVF 326

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             + +  K VS +N++I GLA +GL E S+ +F EM+  G+ P+ +TF+ VL AC H GL
Sbjct: 327 NGMEE--KGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 384

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+EG+  F SM+  +GI+P ++HYGCMVDLL R G L+EA  LI+SMP   +   W ALL
Sbjct: 385 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            AC+ H + ++GE  G+KL++L+PDH   +VLLSN+ A    WE+  +VR +M   G+ K
Sbjct: 445 GACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK 504

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            PG S IE NG +H FLA  K+HP   ++E ML +M  +LK  GY P+T +V  D+DEEE
Sbjct: 505 TPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEE 564

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KET +  HSEKLA+AFGL+       IRI KNLRIC DCH A KL+S+ Y REI+VRD  
Sbjct: 565 KETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRH 624

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK+G CSCMD+W
Sbjct: 625 RFHYFKEGACSCMDYW 640



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 243/482 (50%), Gaps = 80/482 (16%)

Query: 15  LESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           L +C +LKQ  +I  Q++ +G ++   ++S+L+ F   S    GL  S  +F +I+N N 
Sbjct: 36  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFI-GLDYSLQIFDRIENSNG 94

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-RLSSFKSGCQIH 132
           F+WNT+MR Y +S+S ++AL+LY  M+ K  V P+N+T+P V+ +CA RL  F  G +IH
Sbjct: 95  FMWNTMMRAYIQSNSAEKALLLYKLMV-KNNVGPDNYTYPLVVQACAVRLLEF-GGKEIH 152

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-------------------- 172
            H++K G + D++++N LI+ Y++ G + +A K+F+ S                      
Sbjct: 153 DHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMG 212

Query: 173 --------------RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
                         +D+VS++ LI+GY Q      AL +F +M  + ++ D    V++ S
Sbjct: 213 QVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 272

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA----KCGLMNMAERVFSTMG 274
           AC  L+  + GK  H +V + +G + S + L+ A+I+MY+    KCG +  A  VF+ M 
Sbjct: 273 ACAHLSIVKTGKMIHGLVIR-MG-IESYVNLQNALIHMYSDMYMKCGCVENALEVFNGME 330

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             K  ++W+++I G    G +ER                               +L++F 
Sbjct: 331 -EKGVSSWNALIIGLAVNGLVER-------------------------------SLDMFS 358

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           +M++ G+ P+E+T + VL AC  +G +D G+      IE      N+     ++D+  + 
Sbjct: 359 EMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRA 418

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G ++ A  +   +P     V+ + +++    +HG  E    V R  +L+ L+PD   F  
Sbjct: 419 GLLNEAEKLIESMPM-APDVATWGALLGACKKHGDTEMGERVGR--KLIELQPDHDGFHV 475

Query: 455 VL 456
           +L
Sbjct: 476 LL 477


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/515 (44%), Positives = 337/515 (65%), Gaps = 7/515 (1%)

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           + PD FT   +  AC +L+D   GK  H + ++ LG  GSN+ L+  ++N+Y  CG M  
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGL-FQKLG-FGSNLFLQNMILNLYGLCGEMGD 63

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  +F  M   +    W+ +I+   + G I+ A   F +M  +++ SWT+MISG+ Q G 
Sbjct: 64  AMLLFEKMP-QRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGK 122

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
            ++A++LF K+E   + P+EVT+V+VL AC  LG LD G+ +H+ Y     F RN+ +  
Sbjct: 123 PNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHE-YSTKSGFKRNVHVCN 181

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
            +IDMY KCG ++ A  VFY++ +  +TV  ++++I+GLA HG  E ++ +F EM  +G+
Sbjct: 182 TLIDMYVKCGCLENARRVFYEMEE--RTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV 239

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           KP+GVTF+ +L ACSH GL++EG++FF SM  +YG+ PQ+EHYGC+VDL +R G L+EA+
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAH 299

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
             I SMP   N V+W ALL  C++H+N  + E A + L +L+P +  +YV++SN+ AE  
Sbjct: 300 EFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAE 359

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           RWE+A +VRKLM D G++K  GWS I  NG +H F+A  ++HPQ ++I  +   + +K+K
Sbjct: 360 RWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMK 419

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
             GY P T  V+ D++E+EKE  +  HSEKLA+ FGL+ +     IRI KNLR+C DCH 
Sbjct: 420 RRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHA 479

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           A K++S I  REI+VRD  RFH F+ G CSC DFW
Sbjct: 480 ALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 165/371 (44%), Gaps = 69/371 (18%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V P+ FT  FVL +C +LS   +G  IH    K G   +LF++N +++ Y + G + +A 
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 165 KVFEGSLARDLVSYN-------------------------------TLINGYAQVKEPCP 193
            +FE    RD V++N                               ++I+G+ Q  +P  
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ LF K++D  ++P+  T V++ +AC +L D  +G+  H   Y        N+ +   +
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHE--YSTKSGFKRNVHVCNTL 183

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+MY KCG +  A RVF  M   ++  +WS+MI+G    G+ E                 
Sbjct: 184 IDMYVKCGCLENARRVFYEM-EERTVVSWSAMIAGLAMHGQAE----------------- 225

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                         +AL LF +M  LG+ P+ VT + +L AC  +G +D G+R       
Sbjct: 226 --------------EALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTA 271

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH---GLG 430
           +      I     V+D++++ G ++ A      +P     V ++ +++ G   H    L 
Sbjct: 272 DYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGV-VWGALLGGCKVHKNIDLA 330

Query: 431 ETSIAVFREME 441
           E +I    E++
Sbjct: 331 EEAIKHLSELD 341



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F ++ N N+  W +++ G+ +   P EA+ L+  +  +  V PN  T   VL +CA L 
Sbjct: 98  FFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEA-VRPNEVTVVSVLAACADLG 156

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G  +H +  K G + ++ + N LI  Y   G + NA +VF     R +VS++ +I 
Sbjct: 157 DLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIA 216

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A   +   AL LF +M    ++P+  TF+ +  AC+ +     G++F A +  + G +
Sbjct: 217 GLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVI 276

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
              +     V++++++ GL+  A     +M +  +   W +++ G      I+ A +   
Sbjct: 277 -PQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIK 335

Query: 304 QMDQRD 309
            + + D
Sbjct: 336 HLSELD 341



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 31/227 (13%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M    + PD  T   VL+AC+ L  +  GK +H  + + + FG N+FL   ++++Y  CG
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLF-QKLGFGSNLFLQNMILNLYGLCG 59

Query: 396 SIDTALSVFYKIPK------NL-----------------------KTVSLFNSIISGLAQ 426
            +  A+ +F K+P+      N+                       K V  + S+ISG  Q
Sbjct: 60  EMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQ 119

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
            G    +I +F ++E   ++P+ VT V+VL AC+  G ++ G+   E     G K  +  
Sbjct: 120 CGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHV 179

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
              ++D+  + G L+ A  +   M  +   V W A++A   +H  A+
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAE 225



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 24/160 (15%)

Query: 10  SLLALLESCKSLKQALQIHGQIVH-----SGL--NHHISSSQLISFFALSGCKNGLFRSR 62
           +++++L +C  L   L + G+IVH     SG   N H+ ++ LI  +   GC   L  +R
Sbjct: 144 TVVSVLAACADLGD-LDL-GRIVHEYSTKSGFKRNVHVCNT-LIDMYVKCGC---LENAR 197

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F +++   +  W+ ++ G +     +EAL L++ M+  G V PN  TF  +L++C+ +
Sbjct: 198 RVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLG-VKPNGVTFIGLLHACSHM 256

Query: 123 SSFKSGCQIHC----------HIIKFGLEFDLFIRNALIH 152
                G +              I  +G   DLF R  L+ 
Sbjct: 257 GLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLE 296


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/663 (37%), Positives = 392/663 (59%), Gaps = 45/663 (6%)

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           +++ ML++GIV P++   P V+ +CA LS+ ++G Q+HC  +  GL  D  + ++L+H Y
Sbjct: 61  VFSYMLTQGIV-PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMY 119

Query: 155 SIFGYINNAHKVFE--------------GSLAR---------------------DLVSYN 179
             F ++ +A  VF+                 AR                     +LVS+N
Sbjct: 120 VQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWN 179

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I+G+ +      A+ +F+ M    ++PD  +  ++  A  +L+ P +G Q H  V K 
Sbjct: 180 GMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQ 239

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +G +  + +A+I+MY KC   +    VF+ M       A +++++G +R G ++ A 
Sbjct: 240 --GLGPDKFVVSALIDMYGKCACASEMSGVFNEMD-EVDVGACNALVTGLSRNGLVDNAL 296

Query: 300 QLFDQMDQRDL--VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           ++F Q    DL  VSWT+MI+  SQ G   +ALELF +M+  G+ P+ VT+  +L AC  
Sbjct: 297 EVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGN 356

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           + AL  GK  H   + N +F  ++++ +A+IDMYAKCG +  +   F  +P N   VS +
Sbjct: 357 IAALLHGKAAHCFSLRNGIF-NDVYVGSALIDMYAKCGRMLASRLCFDMMP-NRNLVS-W 413

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-L 476
           NS+++G A HG    +I +F  M+  G KPD V+F  VL AC+ GGL EEG  +F+SM  
Sbjct: 414 NSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSR 473

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           N+G++ +MEHY CMV LL R GRL+EAY +I+ MP++ +S +W ALL++CR+H    +GE
Sbjct: 474 NHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGE 533

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           IA +++ +LEP +  +Y+LLSN+ A    W E   VR +M   G++K PG+S+IE    +
Sbjct: 534 IAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKV 593

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H  LA   SHPQ  +I   L  +T+++K +GYVP+T  V+ DV+E++KE ++  HSEKLA
Sbjct: 594 HMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLA 653

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +  GL+N++    +++ KNLRIC DCH   K +S+  +REI VRD  RFH FK G CSC 
Sbjct: 654 VVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCG 713

Query: 717 DFW 719
           D+W
Sbjct: 714 DYW 716



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 127/256 (49%), Gaps = 9/256 (3%)

Query: 55  KNGLFRSRI-LFSQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT 111
           +NGL  + + +F Q    + N+  W +++   S++    EAL L+  M  +G V PN+ T
Sbjct: 288 RNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEG-VKPNSVT 346

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
            P +L +C  +++   G   HC  ++ G+  D+++ +ALI  Y+  G +  +   F+   
Sbjct: 347 IPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMP 406

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R+LVS+N+L+ GYA   +   A+ +F  MQ    +PD  +F  + SACT+      G  
Sbjct: 407 NRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWF 466

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
           +   + +N G V + M   + ++ +  + G +  A  +   M     +  W +++S    
Sbjct: 467 YFDSMSRNHG-VEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRV 525

Query: 292 EGKIE----RARQLFD 303
             +++     A+++F+
Sbjct: 526 HNRVDLGEIAAKRVFE 541



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 66/281 (23%)

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH-- 368
           +S    I  +S++  F   + +F  M + GI PD   +  V++ C  L AL  GK++H  
Sbjct: 40  ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99

Query: 369 -----------------QQYI--ENVVFGRNIF---------LTTAVIDMYAKCGSIDTA 400
                              Y+  +++   RN+F          ++A+I  +A+ G +   
Sbjct: 100 ALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKET 159

Query: 401 LSVFYK---IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             +FY+   +   L  VS +N +ISG  + G    ++ +F+ M L GLKPDG +  +VL 
Sbjct: 160 KELFYQTRDLGVELNLVS-WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLP 218

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQ-------MEHYG---------------------- 488
           A     +   G Q    ++  G+ P        ++ YG                      
Sbjct: 219 AVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGA 278

Query: 489 --CMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAAC 526
              +V  L+R+G +D A  + +     D N V W +++A+C
Sbjct: 279 CNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASC 319


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/787 (34%), Positives = 430/787 (54%), Gaps = 85/787 (10%)

Query: 10  SLLALLESCKSLKQ-----------ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG 57
           SL  LLE C +L Q           A  +H +++ SGL   +   + L++ ++ +G    
Sbjct: 8   SLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYA-- 65

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRS---DS--------PQEALVLYTSM------- 99
              +R LF ++     F WNT++  YS+    DS        PQ   V +T+M       
Sbjct: 66  -LHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNI 124

Query: 100 ------------LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
                       + K  + P  FT   VL S A     ++G ++H  I+K GL  ++ + 
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVS 184

Query: 148 NALIHFYS----------IF---------------------GYINNAHKVFEGSLARDLV 176
           N+L++ Y+          +F                     G ++ A   FE    RD+V
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 177 SYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA- 234
           ++N++I+G+ Q      AL +F KM +DS + PD FT  ++ SAC  L    IGKQ H+ 
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSH 304

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREG 293
           +V       G   ++  A+I+MY++CG +  A R+    G        +++++ GY + G
Sbjct: 305 IVTTGFDISG---IVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
            + +A+ +F  +  RD+V+WTAMI GY Q G + +A+ LF  M   G  P+  T+ A+L 
Sbjct: 362 DMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLS 421

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
               L +L  GK++H   +++     ++ ++ A+I MYAK G+I +A   F  I     T
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEI-YSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           VS + S+I  LAQHG  E ++ +F  M + GL+PD +T+V V  AC+H GLV +G+Q+F+
Sbjct: 481 VS-WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539

Query: 474 SMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M +   I P + HY CMVDL  R G L EA   I+ MP + + V W +LL+ACR+H+N 
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNI 599

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
            +G++A ++LL LEP++   Y  L+N+ +   +WEEA ++RK M D  ++K  G+S+IE 
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV 659

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F     +HP+  EI + +K +  ++K  GYVP+T  V+ D++EE KE ++ +HS
Sbjct: 660 KHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHS 719

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFGLI++  K T+RI KNLR+C DCH A K +S++  REI+VRD  RFH FK G 
Sbjct: 720 EKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGF 779

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 780 CSCRDYW 786



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 159/339 (46%), Gaps = 42/339 (12%)

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC--VGSNML----LKTAVINMYAKCG 261
           P   +   +   CT L    + K       + + C  + S ++    L   ++N+Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
               A ++F  M + ++  +W++++S Y++ G ++   + FDQ+ QRD VSWT MI GY 
Sbjct: 64  YALHARKLFDEMPL-RTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            +G + +A+ + G M   GI P + T+  VL +      ++ GK++H  +I  +    N+
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVH-SFIVKLGLRGNV 181

Query: 382 FLTTAVIDMYAKCGS-------------------------------IDTALSVFYKIPKN 410
            ++ ++++MYAKCG                                +D A++ F ++ + 
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE- 240

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGK 469
            + +  +NS+ISG  Q G    ++ +F +M     L PD  T  +VL AC++   +  GK
Sbjct: 241 -RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
           Q    ++  G          ++ + +R G ++ A  LI+
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/648 (37%), Positives = 380/648 (58%), Gaps = 41/648 (6%)

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           I  WN L+   SR+ SP  AL ++ ++ S     P++ TF   L +CARL    +   + 
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVFRALPSSA--RPDSTTFTLALTACARLGDLDAAEAVR 134

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
                 G   D+F+ +AL+H YS  G + +A +VF+G   +D V+++T++ G+     P 
Sbjct: 135 VRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPV 194

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL ++ +M++  +  D    V +  ACT   + R+G   H    ++   +  ++++ T+
Sbjct: 195 EALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRH--GMRMDVVIATS 252

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +++MYAK                                 G  + ARQ+F  M  R+ VS
Sbjct: 253 LVDMYAK--------------------------------NGHFDVARQVFRMMPYRNAVS 280

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W A+ISG++Q G   +AL+LF +M + G+ PD   +V+ L AC  +G L  GK +H   +
Sbjct: 281 WNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFIL 340

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
             + F     L TAV+DMY+KCGS+++A  +F K+    + + L+N++I+    HG G  
Sbjct: 341 RRLEF--QCILGTAVLDMYSKCGSLESARKLFNKLSS--RDLVLWNAMIACCGTHGCGHD 396

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMV 491
           ++A+F+E+   G+KPD  TF ++L A SH GLVEEGK +F+ M+  +GI+P  +H  C+V
Sbjct: 397 ALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVV 456

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLLAR G ++EA  ++ SM  +    IW ALL+ C  ++  ++GE   +K+L+ +P+   
Sbjct: 457 DLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIG 516

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
              L+SN+ A   +W++ R++RKLM DSG +K PG+S IE +GT H F+   +SHPQ +E
Sbjct: 517 VLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQE 576

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I  M+  ++ +++  GYVP T  V  D+DE+ KE ++SYHSE+LA+AFGL+N+     + 
Sbjct: 577 ILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLV 636

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I KNLR+CGDCH A K +S+I  REI+VRDA RFH FK G CSC D+W
Sbjct: 637 IIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 178/393 (45%), Gaps = 43/393 (10%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S L+  ++  G      R   +F  +   +   W+T++ G+  +  P EAL +Y+ M   
Sbjct: 150 SALLHVYSRCGAMGDAIR---VFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREH 206

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G V+ +      V+ +C    + + G  +H   ++ G+  D+ I  +L+  Y+  G+ + 
Sbjct: 207 G-VAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDV 265

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF     R+ VS+N LI+G+AQ      AL LFR+M  S +QPD+   V+   AC +
Sbjct: 266 ARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACAD 325

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           +   ++GK  H  + + L       +L TAV++MY+KCG +  A ++             
Sbjct: 326 VGFLKLGKSIHGFILRRLEF---QCILGTAVLDMYSKCGSLESARKL------------- 369

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                              F+++  RDLV W AMI+     G    AL LF ++   GI 
Sbjct: 370 -------------------FNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIK 410

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD  T  ++L A    G ++ GK    + I              V+D+ A+ G ++ A  
Sbjct: 411 PDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANE 470

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHG---LGET 432
           +   +     T+ ++ +++SG   +    LGET
Sbjct: 471 MLASMHTE-PTIPIWVALLSGCLNNKKLELGET 502



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 145/298 (48%), Gaps = 12/298 (4%)

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQ-LFDQMDQRDLV-SWTAMISGYSQVGG 325
           R+ + + +S S   + S+ + Y R G ++ A   L      R  + +W A+++  S+ G 
Sbjct: 33  RLHALLVVSSSQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGS 92

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
              AL +F  + S    PD  T    L AC  LG LD  + +  +      +GR++F+ +
Sbjct: 93  PGAALRVFRALPS-SARPDSTTFTLALTACARLGDLDAAEAVRVRAFA-AGYGRDVFVCS 150

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++ +Y++CG++  A+ VF  +P+  K    ++++++G    G    ++ ++  M   G+
Sbjct: 151 ALLHVYSRCGAMGDAIRVFDGMPR--KDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGV 208

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
             D V  V V+ AC+  G    G       L +G++  +     +VD+ A++G  D A  
Sbjct: 209 AEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQ 268

Query: 506 LIQSMPYDANSVIWRALLA--ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           + + MPY  N+V W AL++  A   H +  +          L+PD GA   L+S +LA
Sbjct: 269 VFRMMPYR-NAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGA---LVSALLA 322


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 412/716 (57%), Gaps = 52/716 (7%)

Query: 11   LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRSRILFSQID 69
            +L ++     L+   QIHG ++ SGL+  +S    LI+ +  +G    + R+R +F Q++
Sbjct: 941  MLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAG---SVSRARSVFGQMN 997

Query: 70   NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS-FKSG 128
              ++  WNT++ G + S   + ++ ++  +L   ++ P+ FT   VL +C+ L   +   
Sbjct: 998  EVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLL-PDQFTVASVLRACSSLEGGYYLA 1056

Query: 129  CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             QIH   +K G+  D F+  ALI  YS  G +  A  +F      DL S+N +++GY   
Sbjct: 1057 TQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVS 1116

Query: 189  KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---NLGCVGS 245
             +   AL L+  MQ+S  + D  T V    A   L   + GKQ HAVV K   NL     
Sbjct: 1117 GDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNL----- 1171

Query: 246  NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            ++ + + V++MY KCG M                                E AR++F ++
Sbjct: 1172 DLFVTSGVLDMYLKCGEM--------------------------------ESARRVFSEI 1199

Query: 306  DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
               D V+WT MISG  + G    AL  + +M    + PDE T   +++AC  L AL+ G+
Sbjct: 1200 PSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGR 1259

Query: 366  RLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            ++H   ++ N  F  + F+ T+++DMYAKCG+I+ A  +F +   N + ++ +N++I GL
Sbjct: 1260 QIHANIVKLNCAF--DPFVMTSLVDMYAKCGNIEDARGLFKRT--NTRRIASWNAMIVGL 1315

Query: 425  AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
            AQHG  + ++  F+ M+  G+ PD VTF+ VL ACSH GLV E  + F SM  NYGI+P+
Sbjct: 1316 AQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPE 1375

Query: 484  MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +EHY C+VD L+R GR++EA  +I SMP++A++ ++R LL ACR+  + + G+   +KLL
Sbjct: 1376 IEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLL 1435

Query: 544  DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
             LEP   A YVLLSN+ A   +WE     R +M    ++K PG+S+++    +H F+A  
Sbjct: 1436 ALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGD 1495

Query: 604  KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            +SH +T  I   ++ +  +++  GYVP+T   + DV+EE+KE  + YHSEKLA+A+GL+ 
Sbjct: 1496 RSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMK 1555

Query: 664  SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +    T+R+ KNLR+CGDCH A K +S++++REI++RDA RFH F+ G CSC D+W
Sbjct: 1556 TPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 231/479 (48%), Gaps = 46/479 (9%)

Query: 59   FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
            + +++     D  ++ +WN  +  + +     EA+  +  M++   V+ +  TF  +L  
Sbjct: 886  YATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSR-VACDGLTFVVMLTV 944

Query: 119  CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
             A L+  + G QIH  +++ GL+  + + N LI+ Y   G ++ A  VF      DL+S+
Sbjct: 945  VAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISW 1004

Query: 179  NTLINGYAQVK-EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVV 236
            NT+I+G      E C        ++DS + PD FT  ++  AC+ L     +  Q HA  
Sbjct: 1005 NTMISGCTLSGLEECSVGMFVHLLRDSLL-PDQFTVASVLRACSSLEGGYYLATQIHACA 1063

Query: 237  YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
             K    V  +  + TA+I++Y+K G M  AE +F         A+W++++ GY       
Sbjct: 1064 MK--AGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQD-GFDLASWNAIMHGY------- 1113

Query: 297  RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                         +VS           G F +AL L+  M+  G   D++T+V   +A  
Sbjct: 1114 -------------IVS-----------GDFPKALRLYILMQESGERSDQITLVNAAKAAG 1149

Query: 357  GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            GL  L  GK++H   ++   F  ++F+T+ V+DMY KCG +++A  VF +IP        
Sbjct: 1150 GLVGLKQGKQIHAVVVKR-GFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVA-- 1206

Query: 417  FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM- 475
            + ++ISG  ++G  E ++  + +M L  ++PD  TF T++ ACS    +E+G+Q   ++ 
Sbjct: 1207 WTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIV 1266

Query: 476  -LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
             LN    P +     +VD+ A+ G +++A GL +          W A++     H NAK
Sbjct: 1267 KLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTN-TRRIASWNAMIVGLAQHGNAK 1322



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 131/566 (23%), Positives = 248/566 (43%), Gaps = 61/566 (10%)

Query: 10   SLLALLESCKSLKQALQIHGQIVHSGLNHHIS---SSQLISFFALSGCKNGLFRSRILFS 66
            S+L    +   L    + H +I+ SG  HH     ++ LI+ +A  G    L  +R LF 
Sbjct: 661  SILRQAIAASDLSLGKRAHARILTSG--HHPDRFVTNNLITMYAKCG---SLSSARKLFD 715

Query: 67   QIDNPN--IFIWNTLMRGYS-RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
               + N  +  WN ++   +  +D   +   L+  +L + +VS    T   V   C   +
Sbjct: 716  TTPDTNRDLVTWNAILSALAAHADKSHDGFHLF-RLLRRSVVSTTRHTLAPVFKMCLLSA 774

Query: 124  SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            S  +   +H + +K GL++D+F+  AL++ Y+ FG I  A  +F+G   RD+V +N ++ 
Sbjct: 775  SPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMK 834

Query: 184  GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK----- 238
             Y        A+ LF +   +  +PD  T   +        +    KQF A   K     
Sbjct: 835  AYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYD 894

Query: 239  -----------------------------------NLGCVGSNMLLKTAVINMYAKCGLM 263
                                                + C G   ++   V+       L 
Sbjct: 895  DDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELG 954

Query: 264  NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                 +    G+ +  +  + +I+ Y + G + RAR +F QM++ DL+SW  MISG +  
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 324  GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL-GALDFGKRLHQQYIENVVFGRNIF 382
            G    ++ +F  +    + PD+ T+ +VLRAC  L G      ++H   ++  V   + F
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVV-LDSF 1073

Query: 383  LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
            ++TA+ID+Y+K G ++ A  +F  + ++   ++ +N+I+ G    G    ++ ++  M+ 
Sbjct: 1074 VSTALIDVYSKRGKMEEAEFLF--VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQE 1131

Query: 443  MGLKPDGVTFVTVLCACSHGGLV--EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
             G + D +T V    A + GGLV  ++GKQ    ++  G    +     ++D+  + G +
Sbjct: 1132 SGERSDQITLVNA--AKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEM 1189

Query: 501  DEAYGLIQSMPYDANSVIWRALLAAC 526
            + A  +   +P   + V W  +++ C
Sbjct: 1190 ESARRVFSEIP-SPDDVAWTTMISGC 1214



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 152/312 (48%), Gaps = 24/312 (7%)

Query: 7    EHSSLLALLESCKS------LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
            E S  + L+ + K+      LKQ  QIH  +V  G N        +  F  SG  +   +
Sbjct: 1134 ERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFN--------LDLFVTSGVLDMYLK 1185

Query: 61   ------SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFP 113
                  +R +FS+I +P+   W T++ G   +   + AL  Y  M LSK  V P+ +TF 
Sbjct: 1186 CGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSK--VQPDEYTFA 1243

Query: 114  FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
             ++ +C+ L++ + G QIH +I+K    FD F+  +L+  Y+  G I +A  +F+ +  R
Sbjct: 1244 TLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTR 1303

Query: 174  DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
             + S+N +I G AQ      AL  F+ M+   + PD  TF+ + SAC+         +  
Sbjct: 1304 RIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENF 1363

Query: 234  AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
              + KN G +   +   + +++  ++ G +  AE+V S+M    S + + ++++    + 
Sbjct: 1364 YSMQKNYG-IEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQV 1422

Query: 294  KIERARQLFDQM 305
              E  +++ +++
Sbjct: 1423 DRETGKRVAEKL 1434


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/713 (35%), Positives = 390/713 (54%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLLA   S   L++  Q+H  ++ +G++  +I+   L+  +   G    +  +  +F+ 
Sbjct: 249 ASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG---DIETAHDIFNL 305

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D  N+ +WN ++  Y +     ++  ++  M + GI  PN FT+P +L +C      + 
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI-HPNKFTYPCILRTCTCTGQIEL 364

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH   IK G E D+++   LI  YS +  ++ A K+ E    RD+VS+ ++I GY Q
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL  F++MQD  + PD     +  SAC  +   R G Q HA VY          
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY---------- 474

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                     G +   + W+++++ Y R G+ E A  LF ++D 
Sbjct: 475 ------------------------VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDH 510

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D ++W  +ISG+ Q   + QAL +F KM   G   +  T ++ + A   L  +  GK++
Sbjct: 511 KDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQV 570

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H + ++         +  A+I +Y KCGSI+ A  +F ++  +L+    +N+II+  +QH
Sbjct: 571 HGRAVKTG-HTSETEVANALISLYGKCGSIEDAKMIFSEM--SLRNEVSWNTIITSCSQH 627

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G G  ++ +F +M+  GLKP+ VTF+ VL ACSH GLVEEG  +F+SM N YG+ P  +H
Sbjct: 628 GRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDH 687

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VD+L R G+LD A   +  MP  AN++IWR LL+AC++H+N +IGE+A + LL+LE
Sbjct: 688 YACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELE 747

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A YVLLSN  A T +W    QVRK+M D GI+K PG S+IE    +H F    + H
Sbjct: 748 PHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLH 807

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P + +I   L ++  +L   GY      +  + ++E+K+     HSEKLA+AFGL+    
Sbjct: 808 PLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPP 867

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +R+ KNLR+C DCH   K  SE+ RREI++RD  RFH F  G+CSC D+W
Sbjct: 868 CIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 265/536 (49%), Gaps = 52/536 (9%)

Query: 6   LEHSSLLALLESCKSLKQ----ALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGL-F 59
           L  + L   L++C+         L+IH   V  GL    +  + LI  +A    KNGL +
Sbjct: 40  LGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYA----KNGLVW 95

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++R +F ++ + +   W  ++ GY++    +EA  LY+ M    ++ P  +    VL++C
Sbjct: 96  QARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSAC 154

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            +   F  G  IH  + K     + F+ NALI  Y  FG    A +VF   L  D V++N
Sbjct: 155 TKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFN 214

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           TLI+G+AQ      AL +F +MQ S ++PD  T  ++ +AC  + D + GKQ H+ + K 
Sbjct: 215 TLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK- 273

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +  + + + +++++Y KCG                                 IE A 
Sbjct: 274 -AGMSFDYITEGSLLDLYVKCG--------------------------------DIETAH 300

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F+  D+ ++V W  M+  Y Q+   +++ E+FG+M++ GIHP++ T   +LR C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            ++ G+++H   I+N  F  +++++  +IDMY+K   +D A  +   + K  + V  + S
Sbjct: 361 QIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYRCLDKARKILEMLEK--RDVVSWTS 417

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +I+G  QH   E ++A F+EM+  G+ PD +   +   AC+    + +G Q    +   G
Sbjct: 418 MIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG 477

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA---CRLHRNA 532
               +  +  +V+L AR GR +EA+ L + + +  + + W  L++     RL+  A
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLISGFGQSRLYEQA 532



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 136/257 (52%), Gaps = 5/257 (1%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I  Y + G + +ARQ+F ++  RD VSW AM+SGY+Q G   +A  L+ +M    + P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
              + +VL AC        G+ +H Q  +   F    F+  A+I +Y   GS   A  VF
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQ-AFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +    +    FN++ISG AQ G GE ++ +F EM+L GL+PD VT  ++L AC+  G 
Sbjct: 203 CDMLFCDRVT--FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           +++GKQ    +L  G+       G ++DL  + G ++ A+ +  ++    N V+W  +L 
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLV 319

Query: 525 A-CRLHRNAKIGEIAGQ 540
           A  ++   AK  EI GQ
Sbjct: 320 AYGQISDLAKSFEIFGQ 336


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/713 (35%), Positives = 391/713 (54%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLLA   S   L++  Q+H  ++ +G++  +I+   L+  +   G    +  +  +F+ 
Sbjct: 249 ASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG---DIETAHDIFNL 305

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D  N+ +WN ++  Y +     ++  ++  M + GI  PN FT+P +L +C      + 
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI-HPNQFTYPCILRTCTCTGQIEL 364

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH   IK G E D+++   LI  YS +G ++ A K+ E    RD+VS+ ++I GY Q
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL  F++MQD  + PD     +  SAC  +   R G Q HA VY          
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY---------- 474

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                     G +   + W+++++ Y R G+ E A  LF +++ 
Sbjct: 475 ------------------------VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEH 510

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D ++W  +ISG+ Q   + QAL +F KM   G   +  T ++ + A   L  +  GK++
Sbjct: 511 KDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQV 570

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H + ++         +  A+I +Y KCGSI+ A  +F ++  +L+    +N+II+  +QH
Sbjct: 571 HGRAVKTG-HTSETEVANALISLYGKCGSIEDAKMIFSEM--SLRNEVSWNTIITSCSQH 627

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G G  ++ +F +M+  GLKP+ VTF+ VL ACSH GLVEEG  +F+SM N YG+ P  +H
Sbjct: 628 GRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDH 687

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VD+L R G+LD A   +  MP  AN++IWR LL+AC++H+N +IGE+A + LL+LE
Sbjct: 688 YACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELE 747

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A YVLLSN  A T +W    QVRK+M D GI+K PG S+IE    +H F    + H
Sbjct: 748 PHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLH 807

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P + +I   L ++  +L   GY      +  + ++E+K+     HSEKLA+AFGL+    
Sbjct: 808 PLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPP 867

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +R+ KNLR+C DCH   K  SE+ RREI++RD  RFH F  G+CSC D+W
Sbjct: 868 CIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/536 (27%), Positives = 268/536 (50%), Gaps = 52/536 (9%)

Query: 6   LEHSSLLALLESCKSLKQ----ALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGL-F 59
           L  + L   L++C+         L+IH   V  GL    +  + LI  +A    KNGL +
Sbjct: 40  LGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYA----KNGLVW 95

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++R +F ++ + +   W  ++ GY++S   +EA  LY+ M    ++ P  +    VL++C
Sbjct: 96  QARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSAC 154

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            +   F  G  IH  + K     + F+ NALI  Y  FG    A +VF   L  D V++N
Sbjct: 155 TKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFN 214

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           TLI+G+AQ      AL +F +MQ S ++PD  T  ++ +AC  + D + GKQ H+ + K 
Sbjct: 215 TLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK- 273

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +  + + + +++++Y KCG                                 IE A 
Sbjct: 274 -AGMSFDYITEGSLLDLYVKCG--------------------------------DIETAH 300

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F+  D+ ++V W  M+  Y Q+   +++ E+FG+M++ GIHP++ T   +LR C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            ++ G+++H   I+N  F  +++++  +IDMY+K G +D A  +   + K  + V  + S
Sbjct: 361 QIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEK--RDVVSWTS 417

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +I+G  QH   E ++A F+EM+  G+ PD +   +   AC+    + +G Q    +   G
Sbjct: 418 MIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG 477

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA---CRLHRNA 532
               +  +  +V+L AR GR +EA+ L + + +  + + W  L++     RL++ A
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLISGFGQSRLYKQA 532



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 136/257 (52%), Gaps = 5/257 (1%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I  Y + G + +ARQ+F ++  RD VSW AM+SGY+Q G   +A  L+ +M    + P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
              + +VL AC        G+ +H Q  +   F    F+  A+I +Y   GS   A  VF
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQ-AFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +    +    FN++ISG AQ G GE ++ +F EM+L GL+PD VT  ++L AC+  G 
Sbjct: 203 CDMLFCDRVT--FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           +++GKQ    +L  G+       G ++DL  + G ++ A+ +  ++    N V+W  +L 
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLV 319

Query: 525 A-CRLHRNAKIGEIAGQ 540
           A  ++   AK  EI GQ
Sbjct: 320 AYGQISDLAKSFEIFGQ 336


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/618 (40%), Positives = 366/618 (59%), Gaps = 50/618 (8%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           +P     P    S   LS+ +   QIH HIIK              HF+       N   
Sbjct: 72  NPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIK-------------THFHHALQIPLND-- 116

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
            F   L+     +N +I  Y +  +P  AL ++ +++    + D F   ++  AC +++ 
Sbjct: 117 -FPSGLSPS-AQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSW 174

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW--- 282
            ++GK+ H  V K    +  ++ +  A++ MY +C  +  A  VF  M M +   +W   
Sbjct: 175 TQLGKEIHGFVLKK--GLDRDVFVGNALMLMYGECACVEYARLVFDKM-MERDVVSWIPT 231

Query: 283 -SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            ++++  Y + G +  ARQLF+ + Q+ +VSWTAMI+G  +     +  +LF +M+   I
Sbjct: 232 TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENI 291

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+E+TM+   R  V                       +  L TA++DMYAKCG I+ A 
Sbjct: 292 FPNEITMLNKERVEV-----------------------DCILNTALVDMYAKCGDINAAG 328

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            +F  I    + + ++N+II+G A HG GE ++ +F EME  G+KP+ +TF+ +L ACSH
Sbjct: 329 RLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 386

Query: 462 GGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            GLV EGK+ FE M++ +G+ PQ+EHYGCMVDLL R G LDEA+ +I+SMP   N+++W 
Sbjct: 387 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 446

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           AL+AACRLH+N ++GE+A  +LL++EP++  + VL+SN+ A   RW +A  VRK M   G
Sbjct: 447 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 506

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           ++K PG S IE NGT+H FL   +SHPQ + I  ML +M  KL  AGYVP+T  V+ ++D
Sbjct: 507 MKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNID 566

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEEKET ++YHSEKLA+AFGLI++     IRI KNLR+C DCH A KLLS+IY R I+VR
Sbjct: 567 EEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVR 626

Query: 701 DAIRFHLFKKGNCSCMDF 718
           D  RFH F++G CSC D+
Sbjct: 627 DRNRFHHFREGYCSCGDY 644



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 197/436 (45%), Gaps = 67/436 (15%)

Query: 20  SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           +L+Q  QIH  I+ +  +H +          L+   +GL  S    +Q        WN +
Sbjct: 90  TLEQTKQIHAHIIKTHFHHALQ-------IPLNDFPSGLSPS----AQ--------WNFV 130

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           +  Y++ + P+ AL +Y + L K     +NF  P VL +C ++S  + G +IH  ++K G
Sbjct: 131 ITSYTKRNQPRNALNVY-AQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG 189

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           L+ D+F+ NAL+  Y     +  A  VF+  + RD+VS+         +   C  L L R
Sbjct: 190 LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLAR 249

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF-----------HAVVYKNLGCVGSNML 248
           ++ +   Q    ++ AM + C   N    G +            + +   N   V  + +
Sbjct: 250 QLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERVEVDCI 309

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L TA+++MYAKCG +N A R+F    +S+    W+++I+G+                   
Sbjct: 310 LNTALVDMYAKCGDINAAGRLF-IEAISRDICMWNAIITGFA------------------ 350

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                   + GY +     +AL++F +ME  G+ P+++T + +L AC   G +  GK+L 
Sbjct: 351 --------MHGYGE-----EALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF 397

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           ++ +        I     ++D+  + G +D A  +   +P    T+ ++ ++++    H 
Sbjct: 398 EKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTI-VWGALVAACRLHK 456

Query: 429 ---LGETSIAVFREME 441
              LGE +     E+E
Sbjct: 457 NPQLGELAATQLLEIE 472


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/642 (38%), Positives = 379/642 (59%), Gaps = 46/642 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF--YSIFGYINNAHKVFEGSLA 172
           +LN C  L++FK   QIH +++K GLE D FI   L+H    S+   ++ A ++F  +  
Sbjct: 11  LLNICKSLTTFK---QIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPN 67

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            D+  +NTLI G  +   P  +L  F +M+ +S   PD+F+F  +  A   L   R+G Q
Sbjct: 68  PDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQ 127

Query: 232 FH--AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA--------- 280
            H  A+V+     + +++ + T +I+MY +CG +  A +VF  M    + A         
Sbjct: 128 LHCQALVHG----LDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACC 183

Query: 281 ---------------------AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
                                +W+ M++GYT+ G++E AR++F +M  +D VSW+ MI G
Sbjct: 184 RGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVG 243

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           ++  G F +A   F +++  G+ P+E ++  VL AC   GAL+FGK LH  +IE      
Sbjct: 244 FAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHG-FIEKSGLAW 302

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
            + +  A++D Y+KCG++  A  VF +I  N + +  + S+++ LA HG GE +I +F +
Sbjct: 303 IVSVNNALLDTYSKCGNVLMAQLVFERI-MNERNIVSWTSMMAALAMHGHGEEAIGIFHK 361

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           ME  G++PD + F+++L ACSH GLVE+G ++F+ M   Y I+P +EHYGCMVDL  R G
Sbjct: 362 MEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAG 421

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           +L +AY  +  MP    ++IWR LL AC +H + K+ E   ++L +L+P++ + +VLLSN
Sbjct: 422 QLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSN 481

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
             A   +W++A  VR+ M +  I K PGWS IE +  ++ FLA  K +  T+E    LK+
Sbjct: 482 AYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKE 541

Query: 619 MTMKLK-SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           +  +L+   GYVP   +V+ D++EEEKE  VS HSEKLA+AFG+       TIRI KNLR
Sbjct: 542 IIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLR 601

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IC DCH   KL+S+IY+ EI+VRD  RFH FK G CSC D+W
Sbjct: 602 ICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 126/250 (50%), Gaps = 3/250 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++   +   W+T++ G++ +   +EA   +  +  KG+  PN  +   VL++CA
Sbjct: 222 AREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGM-RPNETSLTGVLSACA 280

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-ARDLVSYN 179
           +  + + G  +H  I K GL + + + NAL+  YS  G +  A  VFE  +  R++VS+ 
Sbjct: 281 QAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWT 340

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +++   A       A+ +F KM++S I+PD   F+++  AC+       G ++   + K 
Sbjct: 341 SMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKM-KG 399

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           +  +  ++     ++++Y + G +  A      M +  +   W +++   +  G ++ A 
Sbjct: 400 MYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAE 459

Query: 300 QLFDQMDQRD 309
           Q+ +++ + D
Sbjct: 460 QVKERLSELD 469



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 9   SSLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           +SL  +L +C    +L+    +HG I  SGL   +S +  +     S C N L  ++++F
Sbjct: 270 TSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNAL-LDTYSKCGNVLM-AQLVF 327

Query: 66  SQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            +I N  NI  W ++M   +     +EA+ ++  M   GI  P+   F  +L +C+    
Sbjct: 328 ERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGI-RPDEIAFISLLYACSHAGL 386

Query: 125 FKSGCQ 130
            + GC+
Sbjct: 387 VEQGCE 392


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/783 (33%), Positives = 419/783 (53%), Gaps = 75/783 (9%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRI 63
           ++  ++ L   +   S+    Q H QI+  G  + IS  ++L    +  G    ++ +R 
Sbjct: 17  LISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLG---AIYYARD 73

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +  P++F++N LMRG+S ++SP  +L ++  +     + PN+ T+ F +++ +   
Sbjct: 74  IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFR 133

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             ++G  IH   +  G + +L + + ++  Y  F  + +A KVF+    +D + +NT+I+
Sbjct: 134 DDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193

Query: 184 GYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           GY + +    ++ +FR +  +SC + D  T + +  A  EL + R+G Q H++  K  GC
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKT-GC 252

Query: 243 VGSNMLLK------------------------------TAVINMYAKCGLMNMAERVFST 272
              + +L                                A+I+ Y   G   ++  +F  
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 273 MGMSKSTAAWSSMIS-----------------------------------GYTREGKIER 297
           + +S +    S+++S                                    Y++  +IE 
Sbjct: 313 LMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIES 372

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR+LFD+  ++ L SW AMISGY+Q G    A+ LF +M+     P+ VT+  +L AC  
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQ 432

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           LGAL  GK +H   + +  F  +I+++TA+I MYAKCGSI  A  +F  + K  K    +
Sbjct: 433 LGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK--KNEVTW 489

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           N++ISG   HG G+ ++ +F EM   G+ P  VTF+ VL ACSH GLV+EG + F SM++
Sbjct: 490 NTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            YG +P ++HY CMVD+L R G L  A   I++M  +  S +W  LL ACR+H++  +  
Sbjct: 550 RYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLAR 609

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
              +KL +L+PD+  ++VLLSN+ +    + +A  VR+      + K PG++ IE   T 
Sbjct: 610 TVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETP 669

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F +  +SHPQ KEI   L+ +  K++ AGY P T   + DV+EEE+E +V  HSE+LA
Sbjct: 670 HVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLA 729

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGLI +     IRI KNLR+C DCH   KL+S+I  R I+VRDA RFH FK G CSC 
Sbjct: 730 IAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCG 789

Query: 717 DFW 719
           D+W
Sbjct: 790 DYW 792


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/649 (38%), Positives = 376/649 (57%), Gaps = 51/649 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WN  +R  +      E++ LY SML  G  SP+ F+FPF+L SCA LS   SG Q+HCH+
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSG-SSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVKEPCP 193
           I+ G E + F+  ALI  Y   G + +A KVFE +   ++  V YN LI+GY    +   
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A ++FR+M+++ +  D+ T + +   CT      +G+  H        CV      + AV
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHG------ECVKGGTYSEVAV 190

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           +N                            S I+ Y + G +E  R+LFD+M  + L++W
Sbjct: 191 LN----------------------------SFITMYMKCGSVESGRRLFDEMPVKGLITW 222

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            A+ISGYSQ G     LELF +M+S G+ PD  T+V+VL +C  LGA   G+ +  + +E
Sbjct: 223 NAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEV-GELVE 281

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  N+FL+ A+I MYA+CG++  A +VF  +P  +K++  + ++I     HG+GET 
Sbjct: 282 ANGFAPNVFLSNALISMYARCGNLAKARAVFDIMP--VKSLVSWTAMIGCYGMHGMGETG 339

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVD 492
           + +F +M   G++PDG  FV VL ACSH GL ++G + F +M   Y ++P  EHY C+VD
Sbjct: 340 LTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 399

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R GRLDEA   I SMP + +  +W ALL AC++H+N  + E+A  K+++ EP +  +
Sbjct: 400 LLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGY 459

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVL+SN+ +++   E   ++R +M +   +K PG+SY+EH G +H FLA  +SH QT+E+
Sbjct: 460 YVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEV 519

Query: 613 ELMLKDM-TMKLKSAGYVPNTVQVVFDVDE-EEKETVVSYHSEKLALAFGLINSRSKETI 670
             ML ++ T  ++ AG +        D D  EE  +    HSE+LA+AFG++NS     I
Sbjct: 520 HRMLDELETSVMELAGNM--------DCDRGEEVSSTTREHSERLAIAFGILNSIPGTEI 571

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + KNLR+C DCH+  KL+S+I  R  +VRDA RFH FK G CSC D+W
Sbjct: 572 LVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 8/282 (2%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
            +HG+ V  G    ++   L SF  +      +   R LF ++    +  WN ++ GYS+
Sbjct: 174 SLHGECVKGGTYSEVAV--LNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQ 231

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +    + L L+  M S G V P+ FT   VL+SCA L + K G ++   +   G   ++F
Sbjct: 232 NGLAYDVLELFEQMKSSG-VCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVF 290

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           + NALI  Y+  G +  A  VF+    + LVS+  +I  Y         L LF  M    
Sbjct: 291 LSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRG 350

Query: 206 IQPDAFTFVAMFSACTE--LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           I+PD   FV + SAC+   L D  + + F A+  +     G      + ++++  + G +
Sbjct: 351 IRPDGAVFVMVLSACSHSGLTDKGL-ELFRAMKREYKLEPGPEHY--SCLVDLLGRAGRL 407

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           + A     +M +    A W +++        ++ A   F ++
Sbjct: 408 DEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKV 449



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 2/214 (0%)

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           SW   +   +    F++++ L+  M   G  PD  +   +L++C  L     G++LH   
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I         F+ TA+I MY KCG ++ A  VF + P + +    +N++ISG   +    
Sbjct: 77  IRGGCEAEP-FVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            +  +FR M+  G+  D VT + ++  C+    +  G+      +  G   ++      +
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +  + G ++    L   MP     + W A+++ 
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKG-LITWNAVISG 228


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/551 (42%), Positives = 353/551 (64%), Gaps = 14/551 (2%)

Query: 178 YNTLINGYAQVK-EPC----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           +NTLI  + Q + +P       + +F +M+   +QPD  TF  +  +    +   +G+  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + +  G +  +  ++T++I+MY+ CG +  A +VF  +       +W+S+I+   + 
Sbjct: 87  HAQILR-FG-LAIDPFVQTSLISMYSSCGNLGFARQVFDEIP-QPDLPSWNSIINANFQA 143

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH---PDEVTMV 349
           G ++ AR LF  M +R+++SW+ MI+GY + G + +AL LF +M+ LG++   P+E TM 
Sbjct: 144 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 203

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
            VL AC  LGAL+ GK  H  YI+      ++ L TA+IDMYAKCGS++ A  VF  +  
Sbjct: 204 GVLAACGRLGALEHGKWAHA-YIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 262

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
           N K V  ++++ISGLA HGL E  + +F +M   G++P+ VTF+ V CAC HGGLV EGK
Sbjct: 263 N-KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 321

Query: 470 QFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            +   M  +Y I P ++HYGCMVDL  R GR+ EA+ +++SMP + + ++W ALL+  R+
Sbjct: 322 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 381

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H + +  E+A +KL++LEP +   YVLLSN+ A+  RWE+ R VR LM+  GI+K PG S
Sbjct: 382 HGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCS 441

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE  G LH F     SHP+T++I +ML+++  +LK  GYV NT +V+ D+DEE KE  +
Sbjct: 442 LIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELAL 501

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           S HSEKLALA+G + +     IRI KNLRIC DCH+A K++S+++ REI+VRD  RFH F
Sbjct: 502 SLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHF 561

Query: 709 KKGNCSCMDFW 719
            +G CSC D+W
Sbjct: 562 TQGLCSCRDYW 572



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 204/449 (45%), Gaps = 79/449 (17%)

Query: 74  FIWNTLMRGY----SRSDSPQEALV-LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           F+WNTL+R +    ++   P  + + ++  M   G V P+  TFPF+L S A  S    G
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHG-VQPDFHTFPFLLQSFASPSLLHLG 83

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT-------- 180
             +H  I++FGL  D F++ +LI  YS  G +  A +VF+     DL S+N+        
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQA 143

Query: 181 -----------------------LINGYAQVKEPCPALWLFRKMQ---DSCIQPDAFTFV 214
                                  +INGY +  +   AL LFR+MQ    + ++P+ FT  
Sbjct: 144 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 203

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
            + +AC  L     GK  HA + K   C +  +++L TA+I+MYAKCG +  A  VFS +
Sbjct: 204 GVLAACGRLGALEHGKWAHAYIDK---CGMPVDVVLGTALIDMYAKCGSVEKATWVFSNL 260

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           G +K   AWS+MISG    G  E                               + + LF
Sbjct: 261 GPNKDVMAWSAMISGLAMHGLAE-------------------------------ECVGLF 289

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
            KM + G+ P+ VT +AV  ACV  G +  GK   ++  E+      I     ++D+Y +
Sbjct: 290 SKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGR 349

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTF 452
            G I  A +V   +P     V ++ +++SG   HG  ET     +  +L+ L+P +   +
Sbjct: 350 AGRIKEAWNVVKSMPME-PDVLVWGALLSGSRMHGDIETCELALK--KLIELEPTNSGAY 406

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           V +    +  G  E+ +   + M   GIK
Sbjct: 407 VLLSNVYAKRGRWEDVRHVRDLMETMGIK 435



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 176/373 (47%), Gaps = 28/373 (7%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
            +SL+++  SC +L  A Q+  +I    L    S + +I+    +G  +    +R LF+ 
Sbjct: 102 QTSLISMYSSCGNLGFARQVFDEIPQPDLP---SWNSIINANFQAGLVD---MARNLFAV 155

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI--VSPNNFTFPFVLNSCARLSSF 125
           +   N+  W+ ++ GY R    +EAL L+  M   G+  V PN FT   VL +C RL + 
Sbjct: 156 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 215

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLING 184
           + G   H +I K G+  D+ +  ALI  Y+  G +  A  VF      +D+++++ +I+G
Sbjct: 216 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 275

Query: 185 YAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            A   + E C    LF KM +  ++P+A TF+A+F AC        GK +   + ++   
Sbjct: 276 LAMHGLAEECVG--LFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSI 333

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER---AR 299
           +   +     ++++Y + G +  A  V  +M M      W +++SG    G IE    A 
Sbjct: 334 I-PTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELAL 392

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +   +++  +  ++  + + Y++ G +     +   ME++GI           +   G  
Sbjct: 393 KKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI-----------KKVPGCS 441

Query: 360 ALDFGKRLHQQYI 372
            ++ G  LH+ ++
Sbjct: 442 LIEVGGVLHEFFV 454


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 375/591 (63%), Gaps = 11/591 (1%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH  +++ GL  +  +   L   Y+  G ++ +  VF      ++ S++ +I+ + Q +
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A   + +M    ++P+AFTF ++  +C+       GK  H    K LG +GS++ +
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIK-LG-LGSDLYV 178

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +T ++++YA+ G +  A ++F  M   +S  + ++M++ Y++ G++++AR LF+ M +RD
Sbjct: 179 RTGLVDVYARGGDVVCARQLFDKMP-ERSLVSLTTMLTCYSKMGELDKARSLFEGMKERD 237

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           +V W  MI GY+Q G  +++L+LF +M      P+EVT++AVL AC  LGAL+ G+ +H 
Sbjct: 238 VVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHS 297

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YIEN     N+ + TA+IDMY+KCGS++ A  VF +I    K V  +NS+I G A HG 
Sbjct: 298 -YIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD--KDVVAWNSMIVGYAMHGF 354

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
            + ++ +F EM   G KP  +TF+ +L AC HGGLVEEG+ FF  M + YGI+P++EHYG
Sbjct: 355 SQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYG 414

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMV+LL R G L+EAYGL+++M   A+ V+W  LL  CRLH N K+GE   + L+D +  
Sbjct: 415 CMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLA 474

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +   YVLLSNM A T  WE   ++R LM + GI+K  G S IE +  +H F+A ++ HP+
Sbjct: 475 NSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPK 534

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
           +KEI +ML ++   LK+ GY P T  V+ D+ EE+KE  +  HSEKLA+AFGLI+++   
Sbjct: 535 SKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGT 594

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           T++I KNLR+C DCH   K++SEI  R+I++RD  RFH F+ G CSC D+W
Sbjct: 595 TVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 199/431 (46%), Gaps = 78/431 (18%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           +L++  KS+   LQIH  ++  GL H+ I + +L   +A  G    L  S  +F+  D P
Sbjct: 52  SLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALG---RLDCSVFVFNTFDEP 108

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N+F ++ ++  + +S     A   Y+ MLS G V PN FTF  VL SC    S +SG  +
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCG-VEPNAFTFSSVLKSC----SLESGKVL 163

Query: 132 HCHIIKFGLEFDLFIRNALIHF-------------------------------YSIFGYI 160
           HC  IK GL  DL++R  L+                                 YS  G +
Sbjct: 164 HCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGEL 223

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           + A  +FEG   RD+V +N +I GYAQ   P  +L LFR+M  +   P+  T +A+ SAC
Sbjct: 224 DKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSAC 283

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            +L     G+  H+ + +N G +  N+ + TA+I+MY+KCG +  A  VF  +   K   
Sbjct: 284 GQLGALESGRWIHSYI-ENKG-IQINVHVGTALIDMYSKCGSLEDARLVFDRI-RDKDVV 340

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           AW+SMI GY                           + G+SQ      AL+LF +M   G
Sbjct: 341 AWNSMIVGYA--------------------------MHGFSQ-----HALQLFEEMTETG 369

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
             P ++T + +L AC   G ++ G+   +   +       I     ++++  + G ++ A
Sbjct: 370 HKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEA 429

Query: 401 LSVFYKIPKNL 411
               Y + KN+
Sbjct: 430 ----YGLVKNM 436



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVL 116
           L ++R LF  +   ++  WN ++ GY++S  P E+L L+  ML +K I  PN  T   VL
Sbjct: 223 LDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI--PNEVTVLAVL 280

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           ++C +L + +SG  IH +I   G++ ++ +  ALI  YS  G + +A  VF+    +D+V
Sbjct: 281 SACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVV 340

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N++I GYA       AL LF +M ++  +P   TF+ + SAC        G+ F  ++
Sbjct: 341 AWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLM 400

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
               G +   +     ++N+  + G +  A  +   M ++     W +++
Sbjct: 401 RDKYG-IEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLL 449


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 281/749 (37%), Positives = 408/749 (54%), Gaps = 95/749 (12%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEA---LVLYTSMLSKGIVSPNNFTFPF 114
           L R+  LF QI +P++  +N L+R YS S SP  A   L LY  ML +  V+PNN+TFPF
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRML-RHRVAPNNYTFPF 130

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            L +C+ L+    G  IH H I  GL+ DLF+  AL+  Y     + +A  +F    ARD
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 175 LVSYNTLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           LV++N ++ GYA   +     A  L  +MQ   ++P+A T VA+     +      G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 233 HAVVYKNLGCVGSN----------MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           HA   +   C+  N          +LL TA+++MYAKCG +  A RVF  M  +++   W
Sbjct: 251 HAYCIR--ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP-ARNEVTW 307

Query: 283 SSMISGYTREGKIERARQLFDQMDQR---------------------------------- 308
           S++I G+    ++ +A  LF  M  +                                  
Sbjct: 308 SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLA 367

Query: 309 ------DLVSWTAMISGYSQVGGFSQALELFG---------------------------- 334
                 DL +  +++S Y++ G   QA+ LF                             
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 335 ---KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
              KM++  + PD  TMV+++ AC  L AL  G+  H   I   +      +  A+IDMY
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL-ASETSICNALIDMY 486

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKCG ID +  VF  +P   + +  +N++I+G   HGLG+ + A+F EM  +G  PDGVT
Sbjct: 487 AKCGRIDLSRQVFNMMPS--RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVT 544

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+ +L ACSH GLV EGK +F  M + YG+ P+MEHY CMVDLL+R G LDEAY  IQSM
Sbjct: 545 FICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM 604

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P  A+  +W ALL ACR+++N  +G+   + + +L P+   ++VLLSN+ +   R++EA 
Sbjct: 605 PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAA 664

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VR +    G +K PG S+IE NG+LH F+   +SHPQ+ EI   L ++ + +K  GY P
Sbjct: 665 EVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQP 724

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +T  V+ D++EEEKE  +  HSEKLA+A+G+++    +TI +TKNLR+CGDCH   K +S
Sbjct: 725 DTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHIS 784

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + RR I+VRDA RFH FK G CSC DFW
Sbjct: 785 LVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 180/408 (44%), Gaps = 55/408 (13%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA--LWLFRKMQDSCIQPDAFTFVA 215
           G+++ AH +F+   + D+ +YN LI  Y+       A  L L+R+M    + P+ +TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 216 MFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
              AC+ L D   G+  H   ++  L    +++ + TA+++MY KC  +  A  +F+TM 
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGL---QADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
            ++   AW++M++GY   G    A      M                             
Sbjct: 188 -ARDLVAWNAMLAGYAHHGMYHHAVAHLLSM----------------------------- 217

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF-GRN--------IFLTT 385
           +M+   + P+  T+VA+L      GAL  G  +H   I   +   RN        + L T
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 277

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG- 444
           A++DMYAKCGS+  A  VF  +P   +    ++++I G         +  +F+ M   G 
Sbjct: 278 ALLDMYAKCGSLLYARRVFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 445 --LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
             L P   +  + L AC+    +  G+Q    +   G+   +     ++ + A+ G +D+
Sbjct: 336 CFLSP--TSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQ 393

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL--LDLEPD 548
           A  L   M    ++V + AL++    +  A+   +  +K+   ++EPD
Sbjct: 394 AIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 18/246 (7%)

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA--LELFGKMESLGIHPDEVTMV 349
            G + RA  LFDQ+   D+ ++  +I  YS     + A  L L+ +M    + P+  T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
             L+AC  L     G+ +H+  I +     ++F++TA++DMY KC  +  A  +F  +P 
Sbjct: 130 FALKACSALADHHCGRAIHRHAI-HAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIA--VFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
             + +  +N++++G A HG+   ++A  +  +M++  L+P+  T V +L   +  G + +
Sbjct: 189 --RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 468 GKQFFESMLNYGIKPQMEHYG----------CMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           G       +   + P                 ++D+ A+ G L  A  +  +MP   N V
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEV 305

Query: 518 IWRALL 523
            W AL+
Sbjct: 306 TWSALI 311


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/715 (36%), Positives = 389/715 (54%), Gaps = 46/715 (6%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           + L +L++C S   LK   + H Q++  G        + L+S +   G  +G   +R +F
Sbjct: 164 TFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDG---ARQVF 220

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  +N ++ GY++S   ++A  L+  M  +G   PN  +F  +L+ C+   + 
Sbjct: 221 DGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF-KPNRISFLSILDGCSTPEAL 279

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  +H   +  GL  D+ +  ALI  Y   G I  A +VF+    RD+VS+  +I GY
Sbjct: 280 AWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGY 339

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+      A  LF  MQ+  IQPD  T++ + +AC    D  + ++ H+ V +     G+
Sbjct: 340 AENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR--AGFGT 397

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++L+ TA+++MYAKCG +  A +VF  M   +   +WS+MI  Y   G  E         
Sbjct: 398 DLLVDTALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGAYVENGCGE--------- 447

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                 +A E F  M+   + PD VT + +L AC  LGALD G 
Sbjct: 448 ----------------------EAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGM 485

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            ++ Q I+  +   +I +  A+I+M  K GSI+ A  +F  + +  + V  +N +I G +
Sbjct: 486 EIYTQAIKADLVS-HIPVGNALINMNVKHGSIERARYIFENMVQ--RDVVTWNVMIGGYS 542

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
            HG    ++ +F  M     +P+ VTFV VL ACS  G VEEG++FF  +L+  GI P M
Sbjct: 543 LHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTM 602

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           E YGCMVDLL R G LDEA  LI  MP   NS IW  LLAACR++ N  + E A ++ L 
Sbjct: 603 ELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLM 662

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
            EP  GA YV LS+M A    WE   +VRK+M+  G++K  G ++IE  G LH F+   +
Sbjct: 663 SEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDR 722

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHPQ  EI   L  +   +K  GY+P T  V+ +V E+EKE  +SYHSEKLA+A+G+++ 
Sbjct: 723 SHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSL 782

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            S   IRI KNLR+CGDCH A K +S++  REI+ RDA RFH FK G CSC D+W
Sbjct: 783 PSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 231/504 (45%), Gaps = 77/504 (15%)

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           L +G    ++ T+  +   C  L     G Q+  HII+ G + +++  N LI  +SI G 
Sbjct: 52  LGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGN 111

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +  A + F+    + +V++N +I GYAQ+     A  LFR+M D  ++P   TF+ +  A
Sbjct: 112 MLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDA 171

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C+     ++GK+FHA V K +G V S+  + TA+++MY K G M+ A +VF  +   +  
Sbjct: 172 CSSPAGLKLGKEFHAQVIK-VGFV-SDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDV 228

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQR-------------------DLVSW------- 313
           + ++ MI GY + G  E+A QLF +M Q                    + ++W       
Sbjct: 229 STFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQ 288

Query: 314 -------------TAMISGYSQVGGFSQALELFGK------------------------- 335
                        TA+I  Y   G    A  +F K                         
Sbjct: 289 CMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDA 348

Query: 336 ------MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
                 M+  GI PD +T + ++ AC     L   + +H Q +    FG ++ + TA++ 
Sbjct: 349 FGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR-AGFGTDLLVDTALVH 407

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MYAKCG+I  A  VF  + +  + V  ++++I    ++G GE +   F  M+   ++PD 
Sbjct: 408 MYAKCGAIKDARQVFDAMSR--RDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDV 465

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           VT++ +L AC H G ++ G + +   +   +   +     ++++  + G ++ A  + ++
Sbjct: 466 VTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFEN 525

Query: 510 MPYDANSVIWRALLAACRLHRNAK 533
           M    + V W  ++    LH NA+
Sbjct: 526 M-VQRDVVTWNVMIGGYSLHGNAR 548


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 376/617 (60%), Gaps = 14/617 (2%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHK 165
           P+N     + N C  L   K   Q+H  II      F L    +L        ++  A  
Sbjct: 65  PSNPQILSLFNPCKTLRHLK---QVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKT 121

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
           +F          YN+LI   +  K P  AL L+  M  S ++PD  T+  +  AC E + 
Sbjct: 122 IFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSV 181

Query: 226 PRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
              G   H  VV     C   +  + +++I++YA    +  A+++F+ +  ++   +W++
Sbjct: 182 TWFGLLVHTHVVKSGFEC---DSYIVSSLIHLYANGKDLGAAKQLFN-LCSARDVVSWNA 237

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           MI GY +  ++  AR +FD+M  RD++SW  MI+GY+  G  ++AL LF +M ++G+ P 
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPT 297

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           E T+V++L AC  LGALD G  LH  YI +     N  + TA++DMYAKCG I  A  VF
Sbjct: 298 EATVVSLLSACAHLGALDKGLHLHT-YINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 356

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +    K V  +N+II+G+A HG  + +  +F+EM+  G++P+ +TFV +L ACSH G+
Sbjct: 357 NAMES--KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGM 414

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+EG++  + M + YGI+P++EHYGC++DLLAR G L+EA  LI +MP + N     ALL
Sbjct: 415 VDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALL 474

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
             CR+H N ++GE+ G++L++L+P H   Y+LLSN+ A   +W++AR+VR LM  +GI K
Sbjct: 475 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 534

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQVVFDVDEE 642
            PG S IE  G +HRF+A   SHP++ +I   L ++  +LKSA GY  +T  V+ D++EE
Sbjct: 535 VPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEE 594

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           +KE  ++ HSEKLA+A+GL++  SKE IRI KNLR+C DCH   KL+S++Y REI+VRD 
Sbjct: 595 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDR 654

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH F+ G CSC+DFW
Sbjct: 655 NRFHHFEDGECSCLDFW 671



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 224/458 (48%), Gaps = 77/458 (16%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGC---KNGLFRSRILFSQ 67
           +L+L   CK+L+   Q+H QI+     HH S  QL +  +LS        L  ++ +F  
Sbjct: 70  ILSLFNPCKTLRHLKQVHAQII----THHNSPFQLSALASLSALSPFPTFLAYAKTIFHH 125

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + NP   ++N+L+R  S S +P EAL LY +ML  G+  P++ T+PFV+ +C   S    
Sbjct: 126 LQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL-KPDHMTYPFVIKACNESSVTWF 184

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYS--------------------------IFGYIN 161
           G  +H H++K G E D +I ++LIH Y+                          I GY+ 
Sbjct: 185 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 244

Query: 162 -----NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
                +A  VF+  + RD++S+NT+INGYA   +P  AL LF +M+   ++P   T V++
Sbjct: 245 HVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSL 304

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC  L    + K  H   Y N   +  N ++ TA+++MYAKCG +++A +VF+ M  S
Sbjct: 305 LSACAHLG--ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-S 361

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K   AW+++I+G    G ++ A+QLF +M +                             
Sbjct: 362 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEA---------------------------- 393

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ P+++T VA+L AC   G +D G++L      +      +     VID+ A+ G 
Sbjct: 394 ---GVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGF 450

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGE 431
           ++ A+ +   +P      S   +++ G   HG   LGE
Sbjct: 451 LEEAMELIGTMPME-PNPSALGALLGGCRIHGNFELGE 487


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/644 (40%), Positives = 382/644 (59%), Gaps = 31/644 (4%)

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
           ++ S G  SP +  FP + N+C  +       QIH   IK G   D      ++ F +  
Sbjct: 6   TLYSPGGNSPASSLFPQI-NTCRTIRDLS---QIHAVFIKSGQIRDTLAAAEILRFCATS 61

Query: 158 GY----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP--ALWLF-RKMQDSCIQPDA 210
                 ++ AHK+F     R+  S+NT+I G+++  E     A+ LF   M D  I+P+ 
Sbjct: 62  DLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNR 121

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM------- 263
           FTF ++  AC +    + GKQ H +  K     G +  + + ++ MY  CGLM       
Sbjct: 122 FTFPSVLKACAKTGKIQQGKQIHGLALKY--GFGGDEFVMSNLVRMYVICGLMKDACVLF 179

Query: 264 --NMAERVFSTM----GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
             N+ ER    M            W+ MI GY R G  + AR LFD+M QR +VSW  MI
Sbjct: 180 YKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 239

Query: 318 SGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           SGYSQ G F  A+E+F +M+    I P+ VT+V+VL A   LG+L+ G+ LH  Y E+  
Sbjct: 240 SGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHL-YAEDSG 298

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
              +  L +A+IDMY+KCG I+ A+ VF ++P+  + V  ++++I+G A HG    +I  
Sbjct: 299 IRIDDVLGSALIDMYSKCGIIEKAIMVFERLPR--ENVITWSAMINGFAIHGQAGDAIDC 356

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLA 495
           F +M   G++P  V ++ +L ACSH GLVEEG+++F  M++  G++P++EHYGCMVDLL 
Sbjct: 357 FCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 416

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G LDEA   I +MP   + VIW+ALL ACR+HRN ++G+     L+D+ P     YV 
Sbjct: 417 RLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVA 476

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSNM A    W E  ++R  M +  I+K PG S+I+ +G LH FL    SHP+ KEI  M
Sbjct: 477 LSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSM 536

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L +++ KL+ AGY P T QV+ +++EE+KE  + YHSEK+A AFGLI++   + IRI KN
Sbjct: 537 LVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKN 596

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LRIC DCH + KL+S++Y+R+I VRD  RFH F+ G+CSCMD+W
Sbjct: 597 LRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 190/414 (45%), Gaps = 84/414 (20%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKN-GLFRSRILFS 66
           SSL   + +C++++   QIH   + SG +   +++++++ F A S   +  L  +  +F+
Sbjct: 17  SSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFN 76

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQE--ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           Q+   N F WNT++RG+S SD  +   A+ L+  M+S   + PN FTFP VL +CA+   
Sbjct: 77  QMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGK 136

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN---------------------- 162
            + G QIH   +K+G   D F+ + L+  Y I G + +                      
Sbjct: 137 IQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRK 196

Query: 163 -----------------------AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
                                  A  +F+    R +VS+NT+I+GY+Q      A+ +FR
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256

Query: 200 KMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           +M+    I+P+  T V++  A + L    +G+  H  +Y     +  + +L +A+I+MY+
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLH--LYAEDSGIRIDDVLGSALIDMYS 314

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG++  A  VF  +   ++   WS+MI+G+   G                         
Sbjct: 315 KCGIIEKAIMVFERLP-RENVITWSAMINGFAIHG------------------------- 348

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
              Q G    A++ F KM   G+ P +V  + +L AC   G ++ G+R   Q +
Sbjct: 349 ---QAG---DAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMV 396



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 160/349 (45%), Gaps = 19/349 (5%)

Query: 48  FFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP 107
           +  L  CK     +R+LF ++   ++  WNT++ GYS++   ++A+ ++  M     + P
Sbjct: 211 YMRLGDCKA----ARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRP 266

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N  T   VL + +RL S + G  +H +    G+  D  + +ALI  YS  G I  A  VF
Sbjct: 267 NYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVF 326

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           E     ++++++ +ING+A   +   A+  F KM+ + ++P    ++ + +AC+      
Sbjct: 327 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVE 386

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G+++ + +    G +   +     ++++  + GL++ AE     M +      W +++ 
Sbjct: 387 EGRRYFSQMVSVDG-LEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLG 445

Query: 288 GYTREGKIE---RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                  +E   R   +   M   D  ++ A+ + Y+  G +S+  E+  +M+ + I  D
Sbjct: 446 ACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKD 505

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
                       G   +D    LH+  +E+    R   + + ++++  K
Sbjct: 506 P-----------GCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDK 543


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/682 (37%), Positives = 405/682 (59%), Gaps = 34/682 (4%)

Query: 45  LISF-FALSG-CKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           LIS+   LSG  KNG L  +R LF+Q+   ++  WN ++ G++++   +EA  ++  ML 
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV 181

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           K  +S N     +V N   R+   +        +    +++++   N L+  Y     ++
Sbjct: 182 KNEISWNGLLSAYVQN--GRIEDAR-------RLFDSKMDWEIVSWNCLMGGYVRKKRLD 232

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +A  +F+    RD +S+N +I GYAQ      A  LF ++       D F + AM S   
Sbjct: 233 DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSGFV 288

Query: 222 E---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +   L++    + F  +  KN        +   A+I  Y +   +  A  +F  M  S++
Sbjct: 289 QNGMLDEAT--RIFEEMPEKN-------EVSWNAMIAGYVQSQQIEKARELFDQMP-SRN 338

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
           T++W++M++GY + G I++A+ LFD+M QRD +SW AMISGY+Q G   +AL LF KM+ 
Sbjct: 339 TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G   +   +   L +C  + AL+ GK+LH + ++   F        A++ MY KCGSI+
Sbjct: 399 DGGILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIE 457

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF  I +  K +  +N++I+G A+HG G+ ++A+F  M+ M +KPD VT V VL A
Sbjct: 458 EAFDVFEDITE--KDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSA 514

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV++G ++F SM  NYGI    +HY CM+DLL R GRLDEA  L++SMP+  ++ 
Sbjct: 515 CSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
            W ALL A R+H + ++GE A +K+ ++EPD+   YVLLSN+ A + RW E R++R  M 
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMR 634

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D G++K PG+S++E     H F     SHP+ + I   L+++ ++LK  G+V +T  V+ 
Sbjct: 635 DKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           DV+EEEKE ++ YHSEKLA+AFG+++      IR+ KNLR+C DCH A K +S+I +R+I
Sbjct: 695 DVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQI 754

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD+ RFH F +G+CSC D+W
Sbjct: 755 IVRDSNRFHHFSEGSCSCGDYW 776



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 192/417 (46%), Gaps = 55/417 (13%)

Query: 147 RNALIHFYSIFGYINN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
           R+ + +   I GY++N     A KVFE    RDL+S+N +++GY +      A  LF +M
Sbjct: 89  RSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM 148

Query: 202 QDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
                + D  ++ AM S   +   + + R  K F  ++ KN   +  N LL       Y 
Sbjct: 149 P----EKDVVSWNAMLSGFAQNGFVEEAR--KIFDQMLVKNE--ISWNGLLSA-----YV 195

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           + G +  A R+F +  M     +W+ ++ GY R+ +++ AR LFD+M  RD +SW  MI+
Sbjct: 196 QNGRIEDARRLFDSK-MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMIT 254

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE----- 373
           GY+Q G  S+A  LF   E L I  D     A++   V  G LD   R+ ++  E     
Sbjct: 255 GYAQNGLLSEARRLF---EELPIR-DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 374 ---------------------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
                                + +  RN      ++  YA+CG+ID A  +F ++P+  +
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQ--R 368

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
               + ++ISG AQ G  E ++ +F +M+  G   +       L +C+    +E GKQ  
Sbjct: 369 DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLH 428

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             ++  G +        ++ +  + G ++EA+ + + +  + + V W  ++A    H
Sbjct: 429 GRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARH 484



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 21/283 (7%)

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           V S+++     I+ Y + G    A  VF+ M   +ST  +++MISGY    K + AR++F
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGM-RRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++M  RDL+SW  M+SGY + G  S A  LF +M       D V+  A+L      G ++
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGFVE 170

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
             +++  Q     +  +N      ++  Y + G I+ A  +F     + + VS +N ++ 
Sbjct: 171 EARKIFDQ-----MLVKNEISWNGLLSAYVQNGRIEDARRLF-DSKMDWEIVS-WNCLMG 223

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
           G  +    + + ++F  M +     D +++  ++   +  GL+ E ++ FE +    +  
Sbjct: 224 GYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA 279

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               +  MV    ++G LDEA  + + MP + N V W A++A 
Sbjct: 280 ----WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAG 317


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 406/712 (57%), Gaps = 44/712 (6%)

Query: 11   LLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQID 69
            +LA +     L+   Q+HG  V SGL+  +S ++ L++ ++  GC    + +R +F+ + 
Sbjct: 910  VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCA---YFAREVFNDMK 966

Query: 70   NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL-SSFKSG 128
            + ++  WN+++   ++S   +E++ L+  +L +G+  P++FT   VL +C+ L       
Sbjct: 967  HLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL-KPDHFTLASVLRACSSLIDGLNIS 1025

Query: 129  CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             QIH H +K G   D F+   LI  YS  G +  A  +F+     DL  +N ++ GY   
Sbjct: 1026 RQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIG 1085

Query: 189  KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             +   AL LF  +  S  + D  T      AC  L     GKQ HA   K      S++ 
Sbjct: 1086 NDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK--AGFDSDLH 1143

Query: 249  LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
            + + +++MY KCG M  A  VF+ +                                   
Sbjct: 1144 VNSGILDMYIKCGDMVNAGIVFNYISAP-------------------------------- 1171

Query: 309  DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
            D V+WT+MISG    G   QAL ++ +M    + PDE T   +++A   + AL+ G++LH
Sbjct: 1172 DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 1231

Query: 369  QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
               I+ +    + F+ T+++DMYAKCG+I+ A  +F K+  N++ ++L+N+++ GLAQHG
Sbjct: 1232 ANVIK-LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM--NVRNIALWNAMLVGLAQHG 1288

Query: 429  LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
              E ++ +F+ M+  G++PD V+F+ +L ACSH GL  E  ++  SM N YGI+P++EHY
Sbjct: 1289 NAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHY 1348

Query: 488  GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
             C+VD L R G + EA  +I++MP+ A++ I RALL ACR+  + + G+    +L  LEP
Sbjct: 1349 SCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEP 1408

Query: 548  DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
               A YVLLSN+ A   RW++    RK+M    ++K PG+S+I+    LH F+   +SHP
Sbjct: 1409 FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHP 1468

Query: 608  QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
            Q   I   +++M   ++  GYVP+T  V+ DV++EEKE  + YHSEKLA+A+GLI++ + 
Sbjct: 1469 QADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPAS 1528

Query: 668  ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             TIR+ KNLR+CGDCH A K +S+++ REI++RDA RFH F+ G CSC D+W
Sbjct: 1529 TTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 247/548 (45%), Gaps = 57/548 (10%)

Query: 28   HGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
            H +IV SG    H  S+ L++ ++  G    L  +R +F      ++  WN ++  Y+ S
Sbjct: 644  HARIVVSGSAGDHFLSNNLLTMYSKCGS---LSSARQVFDTTPERDLVTWNAILGAYAAS 700

Query: 87   -DS----PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
             DS     QE L L+  +L   + S    T   VL  C       +   +H + IK GLE
Sbjct: 701  VDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 759

Query: 142  FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            +D+F+  AL++ YS  G + +A  +F+    RD+V +N ++ GY Q+     A  LF + 
Sbjct: 760  WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 819

Query: 202  QDSCIQPDAFTFVAMFSACTELN---DPRIGKQFHAVVYK--------NLGC-------- 242
              S ++PD F+   + +  +E+N      +  Q  A   K        ++ C        
Sbjct: 820  HRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSEC 879

Query: 243  --VGSNMLLKTAVINM------YAKCGLMNMAERVFST---------------MGMSKST 279
               G N       +NM      Y    L+ +   V  T                G+    
Sbjct: 880  LWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDV 939

Query: 280  AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            +  +S+++ Y++ G    AR++F+ M   DL+SW +MIS  +Q     +++ LF  +   
Sbjct: 940  SVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHE 999

Query: 340  GIHPDEVTMVAVLRACVGL-GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+ PD  T+ +VLRAC  L   L+  +++H   ++      + F+ T +ID+Y+K G ++
Sbjct: 1000 GLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIA-DSFVATTLIDVYSKSGKME 1058

Query: 399  TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
             A  +F    K+   ++ +N+++ G      G+ ++ +F  +   G K D +T  T   A
Sbjct: 1059 EAEFLFQN--KDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKA 1116

Query: 459  CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
            C    L+++GKQ     +  G    +     ++D+  + G +  A G++ +     + V 
Sbjct: 1117 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVA 1175

Query: 519  WRALLAAC 526
            W ++++ C
Sbjct: 1176 WTSMISGC 1183



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 171/428 (39%), Gaps = 76/428 (17%)

Query: 132  HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
            H  I+  G   D F+ N L+  YS  G +++A +VF+ +  RDLV++N ++  YA   + 
Sbjct: 644  HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 703

Query: 192  C-----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                    L LFR ++ S       T   +   C                  N GC    
Sbjct: 704  NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCL-----------------NSGC---- 742

Query: 247  MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                     ++A  G+   A ++    G+        ++++ Y++ G++  AR LFD M 
Sbjct: 743  ---------LWAAEGVHGYAIKI----GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMR 789

Query: 307  QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            +RD+V W  M+ GY Q+G   +A +LF +    G+ PDE ++  +L              
Sbjct: 790  ERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNG------------ 837

Query: 367  LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
                 +  V +    +L   V    AK    D    VF            +N  +S    
Sbjct: 838  -----VSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVF-----------CWNKKLSECLW 881

Query: 427  HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
             G    +I  F  M  + +  D VT + VL A +    +E GKQ     +  G+   +  
Sbjct: 882  AGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSV 941

Query: 487  YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD-- 544
               +V++ ++ G    A  +   M +  + + W +++++C     + + E +    +D  
Sbjct: 942  ANSLVNMYSKMGCAYFAREVFNDMKH-LDLISWNSMISSC---AQSSLEEESVNLFIDLL 997

Query: 545  ---LEPDH 549
               L+PDH
Sbjct: 998  HEGLKPDH 1005


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/604 (38%), Positives = 373/604 (61%), Gaps = 11/604 (1%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L ++ESC +++Q  QI  ++  +G+  H    S++I+F AL+     L  +  +F++++ 
Sbjct: 161 LLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAH-SGDLHYAHTIFNRVEQ 219

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN F+WNT++RGY  +  P  A   +  M     V  ++ +F F L +C +  +   G  
Sbjct: 220 PNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLR-VEMDSRSFVFALKACQQFETVFEGES 278

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           ++C + K G + +L +RN LIHFY+  G + NA +VF+ S  +D+V++ T+I+GYA    
Sbjct: 279 VYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDC 338

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY-KNLGCVGSNMLL 249
              A+ +F  M  S ++P+  T +A+ SAC+++ +  +GK+ H  V  KN+ C   ++ L
Sbjct: 339 SEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRC---SLSL 395

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+++MY KC  +  A  +F  M  +K   +W+SM++GY + G +E AR+ FDQ  +++
Sbjct: 396 HNALLDMYVKCDCLVDARELFDRMA-TKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKN 454

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            V W+AMI+GYSQ     ++L+LF +M   G+ P E T+V+VL AC  L  L+ G  +HQ
Sbjct: 455 AVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQ 514

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            ++   +   ++ L  A++DMYAKCGSID A  VF  +P+  + +  +N++I+G A +G 
Sbjct: 515 YFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPE--RNLISWNTMIAGYAANGR 572

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
            + +I VF +M  MG +P+ +TFV++L ACSHGGL+ EG+++F++M   YGIKP+  HY 
Sbjct: 573 AKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYA 632

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R G L+EAY LI +MP       W ALL ACR+H N ++  ++   LL L+P+
Sbjct: 633 CMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPE 692

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
               YVLL+N  A   +W + R+VR LM D G++K PG+S IE +G    FL + +SHPQ
Sbjct: 693 DSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQ 752

Query: 609 TKEI 612
           ++EI
Sbjct: 753 SEEI 756


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 365/616 (59%), Gaps = 44/616 (7%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P   ++  V      L+  K G Q+H H++  GL+    + + ++ FY+  G I+++  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           F G                                       D FTF  +  +  EL   
Sbjct: 128 FNG-------------------------------------IGDYFTFPFVLKSSVELLSV 150

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +GK  H ++ + +G +  ++ + T++I +Y KCG +N A +VF  M + +  ++W++++
Sbjct: 151 WMGKCVHGLILR-IG-LQFDLYVATSLIILYGKCGEINDAGKVFDNMTI-RDVSSWNALL 207

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPD 344
           +GYT+ G I+ A  +F++M  R++VSWT MISGYSQ G   QAL LF +M  E  G+ P+
Sbjct: 208 AGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPN 267

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
            VT+++VL AC  L  L+ G+++H+     +    N  +  A+  MYAKCGS+  A + F
Sbjct: 268 WVTIMSVLPACAQLSTLERGRQIHELACR-MGLNSNASVLIALTAMYAKCGSLVDARNCF 326

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            K+ +N K +  +N++I+  A +G G  +++ FREM   G++PD +TF  +L  CSH GL
Sbjct: 327 DKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGL 386

Query: 465 VEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+ G ++F  M   Y I P++EHY C+ DLL R GRL EA  L+  MP  A   IW +LL
Sbjct: 387 VDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLL 446

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
           AACR HRN ++ E A +KL  LEP++  +YVLLSNM AE  RW+E  ++R ++   G +K
Sbjct: 447 AACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKK 506

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            PG S+IE NG  H FL    SHPQ KEI + L+ +  K+K+AGY P+T  V+ D+ EEE
Sbjct: 507 SPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEE 566

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  +  HSEKLA+AFG++N+ ++  +R+TKNLRICGDCH A   +SEIY RE++VRD  
Sbjct: 567 KEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDIN 626

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G CSC D+W
Sbjct: 627 RFHHFKGGCCSCGDYW 642



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 161/340 (47%), Gaps = 17/340 (5%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQ 67
           +SL+ L   C  +  A    G++  +     +SS + L++ +  SGC +       +F +
Sbjct: 173 TSLIILYGKCGEINDA----GKVFDNMTIRDVSSWNALLAGYTKSGCIDAALA---IFER 225

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLSSFK 126
           +   NI  W T++ GYS+S   Q+AL L+  M+ +   V PN  T   VL +CA+LS+ +
Sbjct: 226 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 285

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLING 184
            G QIH    + GL  +  +  AL   Y+  G + +A   F+      ++L+++NT+I  
Sbjct: 286 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 345

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YA       A+  FR+M  + IQPD  TF  + S C+      +G ++   +      + 
Sbjct: 346 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYS-IN 404

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQ 300
             +     V ++  + G +  A ++   M M    + W S+++   +   +E     AR+
Sbjct: 405 PRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARK 464

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           LF  ++  +  ++  + + Y++ G + +  +L   ++S G
Sbjct: 465 LF-VLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQG 503


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/723 (36%), Positives = 415/723 (57%), Gaps = 25/723 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+   L S  +  Q  ++H  I+  GL+H  I S++LI+ +A        F    L S 
Sbjct: 17  SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASP 76

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             + N+++WN+++R  + +    EAL LY S   +  + P+ +TFP V+N+CA L  F+ 
Sbjct: 77  --SNNVYLWNSIIRALTHNGLFSEALSLY-SETQRIRLQPDTYTFPSVINACAGLLDFEM 133

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY-- 185
              IH  ++  G   DL+I NALI  Y  F  ++ A KVFE    RD+VS+N+LI+GY  
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193

Query: 186 -----AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKN 239
                  ++    ++ LF +M +   +PD  T  ++  AC  L D   GK  H  ++   
Sbjct: 194 NGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 252

Query: 240 LGC--VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
             C    SN+L     INMYAKCG +  ++ VFS M   K + +W+SMI+ Y + GK+  
Sbjct: 253 YECDTTASNIL-----INMYAKCGNLLASQEVFSGMK-CKDSVSWNSMINVYIQNGKMGD 306

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           + ++F+ M  RD+++W  +I+        +  L +  +M + G+ PD  TM+++L  C  
Sbjct: 307 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 366

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L A   GK +H   I  +    ++ +   +I+MY+KCGS+  +  VF K+ K  K V  +
Sbjct: 367 LAAKRQGKEIHG-CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF-KLMKT-KDVVTW 423

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
            ++IS    +G G+ ++  F EME  G+ PD V FV ++ ACSH GLVEEG  +F  M  
Sbjct: 424 TALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKK 483

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +Y I+P++EHY C+VDLL+R   LD+A   I SMP   +S IW ALL+ACR+  + +I E
Sbjct: 484 DYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAE 543

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
              +++++L PD   +YVL+SN+ A   +W++ R +RK +   G++K PG S++E    +
Sbjct: 544 RVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 603

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           + F    K   Q +E+  +L  +   +   GY+ N   V+ D+DE+EK  ++  HSE+LA
Sbjct: 604 YVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLA 663

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGL+N++    +++ KNLR+C DCH   K +S+I +RE++VRDA RFH+FK G CSC 
Sbjct: 664 IAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCG 723

Query: 717 DFW 719
           D+W
Sbjct: 724 DYW 726


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/666 (37%), Positives = 380/666 (57%), Gaps = 24/666 (3%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++  WN+++  Y  +     AL L+  M ++ ++SP+  +   +L +CA L++   G Q+
Sbjct: 327 DLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQV 386

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H   I+ GL  D+F+ NA++  Y+  G +  A+KVF+    +D+VS+N ++ GY+Q    
Sbjct: 387 HGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRL 446

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSA-------CTELNDPR----IGKQFHAVVYKNL 240
             AL LF +M +  I+ D  T+ A+ +        C  L+  R     G + + V   +L
Sbjct: 447 EHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSL 506

Query: 241 --GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
              CV    LL     + YA   ++N+          +      + +I  Y +    E A
Sbjct: 507 LSACVSVGALLHGKETHCYAIKFILNLD----GPDPGADDLKVINGLIDMYAKCQSTEVA 562

Query: 299 RQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESL--GIHPDEVTMVAVLRA 354
           R++FD +    RD+V+WT MI GY+Q G  + AL+LF  M  +   I P++ T+   L A
Sbjct: 563 RKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVA 622

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  L AL FG+++H   + N      +F+   +IDMY+K G +DTA  VF  +P+  +  
Sbjct: 623 CARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ--RNA 680

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             + S+++G   HG GE ++ VF EM  + L PDG+TF+ VL ACSH G+V+ G  FF  
Sbjct: 681 VSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNR 740

Query: 475 M-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M  ++G+ P  EHY CMVDL  R GRL EA  LI  MP +   V+W ALL+ACRLH N +
Sbjct: 741 MSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVE 800

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +GE A  +LL+LE  +   Y LLSN+ A   RW++  ++R  M  +GI+K PG S+I+  
Sbjct: 801 LGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGR 860

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +  F    +SHPQ+++I   L D+  ++K+ GYVP T   + DVD+EEK  ++  HSE
Sbjct: 861 KGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSE 920

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLALA+G++    +  IRITKNLRICGDCH A   +S+I   EI++RD+ RFH FK G+C
Sbjct: 921 KLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSC 980

Query: 714 SCMDFW 719
           SC  +W
Sbjct: 981 SCKGYW 986



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 167/538 (31%), Positives = 284/538 (52%), Gaps = 29/538 (5%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI--D 69
           +  L+ C SL  A  +H Q +  GL  H++++ + ++ A     N    + +L  ++   
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLFHLATNLIGTYIA----SNSTAYAILLLERLPPS 220

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             ++F WN L+R      SP++   LY  M S G  +P+++TFPFV  +CA LSS   G 
Sbjct: 221 PSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGW-TPDHYTFPFVFKACANLSSLSLGA 279

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYA 186
            +H  + + G   ++F+ NA++  Y   G + +AH +F+    R   DLVS+N++++ Y 
Sbjct: 280 SLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM 339

Query: 187 QVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
              +   AL LF KM     + PD  + V +  AC  L     G+Q H    ++ G V  
Sbjct: 340 WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS-GLV-D 397

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  AV++MYAKCG M  A +VF  M   K   +W++M++GY++ G++E A  LF++M
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVFQRMKF-KDVVSWNAMVTGYSQAGRLEHALSLFERM 456

Query: 306 DQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
            +     D+V+WTA+I+GY+Q G   +AL++F +M   G  P+ VT+V++L ACV +GAL
Sbjct: 457 TEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGAL 516

Query: 362 DFGKRLHQQYIENVVF-------GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
             GK  H   I+ ++          ++ +   +IDMYAKC S + A  +F  +    + V
Sbjct: 517 LHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDV 576

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELM--GLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
             +  +I G AQHG    ++ +F  M  M   +KP+  T    L AC+    +  G+Q  
Sbjct: 577 VTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVH 636

Query: 473 ESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             +L N+     +    C++D+ ++ G +D A  +  +MP   N+V W +L+    +H
Sbjct: 637 AYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGYGMH 693


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 405/713 (56%), Gaps = 47/713 (6%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCK-NGLFRSRILFSQI 68
           +LA      SL    Q+H   +  GL+  ++ S+ LI+ +    CK   +  +R +F+ +
Sbjct: 328 VLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMY----CKLRKIGLARTVFNNM 383

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS- 127
              ++  WN+++ G ++SD   EA+ L+  +L  G+  P+++T   VL + + L    S 
Sbjct: 384 SERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGL-KPDHYTMTSVLKAASSLPEGLSL 442

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
             QIH H IK     D F+  ALI  YS    +  A  +F G    DLV++N +++GY Q
Sbjct: 443 SKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQ 501

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +    L LF  M     + D FT   +   C  L     GKQ HA   K+      ++
Sbjct: 502 SHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS--GYDLDL 559

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + + +++MY KCG M+ A+  F                                D +  
Sbjct: 560 WVSSGILDMYVKCGDMSAAQFAF--------------------------------DSIPV 587

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            D V+WT +ISG  + G   +AL +F +M  +G+ PDE T+  + +A   L AL+ G+++
Sbjct: 588 PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 647

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   ++ +    + F+ T+++DMYAKCGSID A  +F +I   +  ++ +N+++ GLAQH
Sbjct: 648 HANALK-LNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRI--EMMNITAWNAMLVGLAQH 704

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           G G+ ++ +F++ME +G+KPD VTF+ VL ACSH GLV E  ++  SM  +YGIKP++EH
Sbjct: 705 GEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEH 764

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+ D L R G + EA  LI SM  +A++ ++R LLAACR+  + + G+    KLL+LE
Sbjct: 765 YSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 824

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   + YVLLSNM A   +W+E +  R +M    ++K PG+S+IE    +H F+   +S+
Sbjct: 825 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSN 884

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           PQT+ I   +KDM   +K  GYVP T   + DV+EEEKE  + YHSEKLA+AFGL+++  
Sbjct: 885 PQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPP 944

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+ KNLR+CGDCH A K +S++Y REI++RDA RFH FK G CSC D+W
Sbjct: 945 STPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 152/560 (27%), Positives = 251/560 (44%), Gaps = 61/560 (10%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N ++ GY  +      L  +  M+   +   +  TF  VL +  RL S   G Q+HC  +
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDL-ECDQVTFILVLATAVRLDSLALGQQVHCMAL 349

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K GL+  L + N+LI+ Y     I  A  VF     RDL+S+N++I G AQ      A+ 
Sbjct: 350 KLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVC 409

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
           LF ++    ++PD +T  ++  A + L +   + KQ H    K      S   + TA+I+
Sbjct: 410 LFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADS--FVSTALID 467

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
            Y++   M  AE +F          AW++M+SGYT                         
Sbjct: 468 AYSRNRCMKEAEVLFGRNNF--DLVAWNAMMSGYT------------------------- 500

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
                 Q     + LELF  M   G   D+ T+  VL+ C  L A++ GK++H   I++ 
Sbjct: 501 ------QSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS- 553

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            +  ++++++ ++DMY KCG +  A   F  IP  +     + ++ISG  ++G  E ++ 
Sbjct: 554 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP--VPDDVAWTTLISGCIENGEEERALH 611

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           VF +M LMG+ PD  T  T+  A S    +E+G+Q   + L             +VD+ A
Sbjct: 612 VFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYA 671

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHY 553
           + G +D+AY L + +    N   W A+L     H   K  +      + L ++PD     
Sbjct: 672 KCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFI 730

Query: 554 VLL-----SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
            +L     S +++E Y++     +R +  D GI KP     IEH   L   L        
Sbjct: 731 GVLSACSHSGLVSEAYKY-----IRSMHRDYGI-KPE----IEHYSCLADALGRAG---L 777

Query: 609 TKEIELMLKDMTMKLKSAGY 628
            KE E ++  M+M+  ++ Y
Sbjct: 778 VKEAENLIDSMSMEASASMY 797



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 235/530 (44%), Gaps = 60/530 (11%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS-----DSPQEALVLYT 97
           + LIS ++  G    L  +R +F ++   ++  WN+++  Y++S     ++ +EA +L+ 
Sbjct: 85  NNLISMYSKCG---SLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLF- 140

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
            +L + +V  +  T   +L  C       +    H +  K GL+ D F+  AL++ Y  F
Sbjct: 141 RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKF 200

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G +     +FE    RD+V +N ++  Y ++     A+ L      S + P+  T + + 
Sbjct: 201 GKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT-LRLL 259

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG--------LMNMAER- 268
           S  +   D     Q  +    N     S ++ +  +++ Y   G         M+M E  
Sbjct: 260 SRIS--GDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESD 317

Query: 269 ----------VFST-------------------MGMSKSTAAWSSMISGYTREGKIERAR 299
                     V +T                   +G+       +S+I+ Y +  KI  AR
Sbjct: 318 LECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLAR 377

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F+ M +RDL+SW ++I+G +Q     +A+ LF ++   G+ PD  TM +VL+A   L 
Sbjct: 378 TVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLP 437

Query: 360 -ALDFGKRLHQQYIE--NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             L   K++H   I+  NV    + F++TA+ID Y++   +  A  +F +   N   V+ 
Sbjct: 438 EGLSLSKQIHVHAIKTNNVA---DSFVSTALIDAYSRNRCMKEAEVLFGR--NNFDLVA- 491

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N+++SG  Q   G  ++ +F  M   G + D  T  TVL  C     + +GKQ     +
Sbjct: 492 WNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAI 551

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
             G    +     ++D+  + G +  A     S+P   + V W  L++ C
Sbjct: 552 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGC 600



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 186/443 (41%), Gaps = 62/443 (13%)

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  I+      + F+ N LI  YS  G +  A +VF+    RDLVS+N+++  YAQ  E 
Sbjct: 69  HARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEG 128

Query: 192 C-----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  A  LFR ++   +     T   M   C         + FH    K +G  G +
Sbjct: 129 VVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACK-IGLDGDD 187

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF---- 302
             +  A++N+Y K G +     +F  M   +    W+ M+  Y   G  E A  L     
Sbjct: 188 -FVAGALVNIYLKFGKVKEGRVLFEEMPY-RDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 245

Query: 303 ----------------------------------DQMDQRDLVSWTAMISGYSQVGGFSQ 328
                                             D     +++S   ++SGY   G +S 
Sbjct: 246 TSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSA 305

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT--A 386
            L+ F  M    +  D+VT + VL   V L +L  G+++H   ++    G ++ LT   +
Sbjct: 306 LLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK---LGLDLMLTVSNS 362

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +I+MY K   I  A +VF  + +  + +  +NS+I+G+AQ  L   ++ +F ++   GLK
Sbjct: 363 LINMYCKLRKIGLARTVFNNMSE--RDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLK 420

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ--MEHY--GCMVDLLARDGRLDE 502
           PD  T  +VL A S    + EG    + +  + IK     + +    ++D  +R+  + E
Sbjct: 421 PDHYTMTSVLKAASS---LPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKE 477

Query: 503 AYGLIQSMPYDANSVIWRALLAA 525
           A  L     +D   V W A+++ 
Sbjct: 478 AEVLFGRNNFDL--VAWNAMMSG 498



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           LR  +    L  GK  H + I  +      FL   +I MY+KCGS+  A  VF K+P+  
Sbjct: 53  LRDAISTSDLMLGKCTHAR-ILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPE-- 109

Query: 412 KTVSLFNSIISGLAQHGLG-----ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           + +  +NSI++  AQ   G     + +  +FR +    +    +T   +L  C H G V 
Sbjct: 110 RDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVC 169

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             + F       G+       G +V++  + G++ E   L + MPY  + V+W  +L A
Sbjct: 170 ASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPY-RDVVLWNLMLKA 227


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/741 (35%), Positives = 409/741 (55%), Gaps = 72/741 (9%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +LL    S KS  QA Q+H QI+ + L    S S L +  ++    N L  S ++F+ + 
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSLP---SPSLLSTILSIYSNLNLLHDSLLIFNSLP 66

Query: 70  NP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +P     W +++R Y+       +L  +  ML+ G   P++  FP VL SC  +   + G
Sbjct: 67  SPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFG 125

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFG-----------------------------Y 159
             +H  II+ G+ FDL+  NAL++ YS F                              Y
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY 185

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           + +  KVFE    RD+VS+NT+I+G AQ      AL + R+M ++ ++PD+FT  ++   
Sbjct: 186 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 245

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
             E  +   GK+ H    +N     +++ + +++I+MYAKC                   
Sbjct: 246 FAEYVNLLKGKEIHGYAIRN--GYDADVFIGSSLIDMYAKCT------------------ 285

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         +++ + ++F  + Q D +SW ++I+G  Q G F + L+ F +M   
Sbjct: 286 --------------RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIA 331

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
            I P+ V+  +++ AC  L  L  GK+LH  YI    F  N+F+ +A++DMYAKCG+I T
Sbjct: 332 KIKPNHVSFSSIMPACAHLTTLHLGKQLHG-YIIRSRFDGNVFIASALVDMYAKCGNIRT 390

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A  +F K+   L  +  + ++I G A HG    +I++F+ ME+ G+KP+ V F+ VL AC
Sbjct: 391 ARWIFDKM--ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTAC 448

Query: 460 SHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLV+E  ++F SM  +Y I P +EHY  + DLL R GRL+EAY  I  M  +    +
Sbjct: 449 SHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSV 508

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W  LLAACR+H+N ++ E   +KL  ++P +   YVLLSN+ +   RW++AR++R  M D
Sbjct: 509 WSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRD 568

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G++K P  S+IE    +H F+A  KSHP    I   LK +  +++  GYV +T +V+ D
Sbjct: 569 KGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHD 628

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           V+EE+K  ++  HSE+LA+ FG+I++ +  TIR+TKNLR+C DCH A K +S+I  REI+
Sbjct: 629 VEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIV 688

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD  RFH FK G CSC DFW
Sbjct: 689 VRDNSRFHHFKDGKCSCGDFW 709



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 161/337 (47%), Gaps = 9/337 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+L +     +L +  +IHG  + +G +  +   S LI  +A     +   R   +  Q
Sbjct: 240 SSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 299

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D  +   WN+++ G  ++    E L  +  ML   I  PN+ +F  ++ +CA L++   
Sbjct: 300 HDGIS---WNSIIAGCVQNGMFDEGLKFFQQMLIAKI-KPNHVSFSSIMPACAHLTTLHL 355

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H +II+   + ++FI +AL+  Y+  G I  A  +F+     D+VS+  +I GYA 
Sbjct: 356 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 415

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF++M+   ++P+   F+A+ +AC+         ++   + ++   +   +
Sbjct: 416 HGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRII-PGL 474

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-- 305
               AV ++  + G +  A    S M +  + + WS++++       IE A ++  ++  
Sbjct: 475 EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT 534

Query: 306 -DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            D +++ ++  + + YS  G +  A +L   M   G+
Sbjct: 535 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGM 571


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/753 (35%), Positives = 419/753 (55%), Gaps = 48/753 (6%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           H+    L  S  SL QA Q H  I+   L      ++ L+SF+A +   +    S  L S
Sbjct: 3   HALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSS 62

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            + +P +F +++L+  ++RS      L  ++ +    ++ P+ F  P  + SCA L +  
Sbjct: 63  HLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLI-PDAFLLPSAIKSCASLRALD 121

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H      G   D  + ++L H Y     I +A K+F+    RD+V ++ +I GY+
Sbjct: 122 PGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYS 181

Query: 187 QVK-----------------EPCPALW------------------LFRKMQDSCIQPDAF 211
           ++                  EP    W                  +FR M      PD  
Sbjct: 182 RLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGS 241

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T   +  A   L D  +G Q H  V K    +GS+  + +A+++MY KCG +    RVF 
Sbjct: 242 TVSCVLPAVGCLEDVVVGAQVHGYVIKQ--GLGSDKFVVSAMLDMYGKCGCVKEMSRVFD 299

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLF----DQMDQRDLVSWTAMISGYSQVGGFS 327
            +       + ++ ++G +R G ++ A ++F    DQ  + ++V+WT++I+  SQ G   
Sbjct: 300 EVE-EMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDL 358

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           +ALELF  M++ G+ P+ VT+ +++ AC  + AL  GK +H   +   +F  ++++ +A+
Sbjct: 359 EALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD-DVYVGSAL 417

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           IDMYAKCG I  A   F K+   L  VS +N+++ G A HG  + ++ +F  M   G KP
Sbjct: 418 IDMYAKCGRIQLARRCFDKMSA-LNLVS-WNAVMKGYAMHGKAKETMEMFHMMLQSGQKP 475

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           D VTF  VL AC+  GL EEG + + SM   +GI+P+MEHY C+V LL+R G+L+EAY +
Sbjct: 476 DLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSI 535

Query: 507 IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566
           I+ MP++ ++ +W ALL++CR+H N  +GEIA +KL  LEP +  +Y+LLSN+ A    W
Sbjct: 536 IKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLW 595

Query: 567 EEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA 626
           +E  ++R++M   G++K PG+S+IE    +H  LA  +SHPQ K+I   L  + M++K +
Sbjct: 596 DEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKS 655

Query: 627 GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAF 686
           GY+P T  V+ DV+E++KE ++  HSEKLA+  GL+N+   + +++ KNLRIC DCH   
Sbjct: 656 GYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVI 715

Query: 687 KLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           K++S +  REI VRD  RFH FK G CSC DFW
Sbjct: 716 KVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/546 (42%), Positives = 345/546 (63%), Gaps = 10/546 (1%)

Query: 178 YNTLINGYAQVKEP---CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +NT I G+++ + P     ++ LF +M    + P+ FTF  +F  C+      +G+QFH 
Sbjct: 57  FNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHG 116

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +V KN      ++ ++ ++I  Y+ CG +N A  VF          +W+SMI G  R G 
Sbjct: 117 MVIKN--SFEMDVFVRNSIIRFYSVCGRLNDARWVFDESS-ELDVVSWNSMIDGCIRNGN 173

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           I  A  LF +M +R+ +SW  MISGY+Q G   +AL LF +M+ L   P+   +V+VL A
Sbjct: 174 ILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSA 233

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  LGALD G  +H  YI       +  L+ A+IDMYAKCGSID A+  F    K  + V
Sbjct: 234 CSQLGALDHGCWVHC-YIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRK--RDV 290

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
           S + + ISGLA +G  E ++ +F +M+  G+ PDGV+++ VLCACSH G VE+G  +F S
Sbjct: 291 SAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFAS 350

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M + +GI+P+++HY CMVDLL R G L+EA   + SMP   ++VIW ALL ACR++ NA+
Sbjct: 351 MSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAE 410

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G+  G  L++ + +H   Y+LLSN+ AE+ + E+A QVRK M    + + PG S IE  
Sbjct: 411 MGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVA 470

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
           G +H F +  +SH +T+EI LM +++  ++K  GY   T  VVFDV+EEEKE V+ +HSE
Sbjct: 471 GFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSE 530

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFG + ++S  T+RI KN+RIC DCH A KL+S++++R+I +RD   FH F++G C
Sbjct: 531 KLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLC 590

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 591 SCKDYW 596



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 199/425 (46%), Gaps = 74/425 (17%)

Query: 21  LKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           +KQ  + H Q++ +GL H   S   +ISF AL    +  +   +L      P +F++NT 
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVS--PNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           +RG+SR+  P   L      +  G++S  PNNFTF F+   C+   +F  G Q H  +IK
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN-------------- 183
              E D+F+RN++I FYS+ G +N+A  VF+ S   D+VS+N++I+              
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180

Query: 184 -----------------GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
                            GYAQ  +P  AL LFR+MQ    +P++   V++ SAC++L   
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGAL 240

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
             G   H  + K   CV  + +L  A+I+MYAKCG +++A + FST    +  +A+++ I
Sbjct: 241 DHGCWVHCYIGKK--CVRVDSILSAALIDMYAKCGSIDLAMQAFST-SRKRDVSAYTAAI 297

Query: 287 SGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKME----- 337
           SG    G  E A QLF+QM       D VS+ A++   S  G   +    F  M      
Sbjct: 298 SGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGI 357

Query: 338 ----------------------------SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                                       S+ I PD V   A+L AC   G  + G+R+  
Sbjct: 358 RPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGS 417

Query: 370 QYIEN 374
             +E+
Sbjct: 418 LLVES 422


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/790 (33%), Positives = 419/790 (53%), Gaps = 92/790 (11%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLFRSRI 63
           L  ++L +L+    +     Q H Q + +G    +++   ++   F  S  ++    +R 
Sbjct: 10  LSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRH----ARA 65

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF  +  P+IF++N L+RG+S +DSP  ++ LYT +     +SP+NFT+ F + +C   S
Sbjct: 66  LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC---S 122

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + K    +H H I  G   ++F+ +AL+  Y  F  +  A KVF+G   RD V +NT+IN
Sbjct: 123 NDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMIN 182

Query: 184 GYAQVKEPC--PALWLFRKMQDSCIQPDAFT----------------------------- 212
           G   VK  C   ++ LFR+M    ++ D+ T                             
Sbjct: 183 GL--VKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGF 240

Query: 213 ---------FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
                     ++++S C ++N  R+   F  +   +L  +  N ++     N   +C + 
Sbjct: 241 GFCDYVLTGLISLYSKCGDVNTARL--LFRRINRPDL--IAYNAMISGFTANGGTECSVK 296

Query: 264 NMAERVFSTMGMSKST---------------------------------AAWSSMISGYT 290
              E +FS   +S ST                                    ++  + Y 
Sbjct: 297 LFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN 356

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           +  +I+ AR LFD+  ++ +V+W AMISGY+Q G    A+ LF +M      P+ VT+  
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +L AC  LG+L FGK +H   I++     NI+++TA++DMYAKCG+I  A  +F  + + 
Sbjct: 417 ILSACAQLGSLSFGKWVHH-LIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSE- 474

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K    +N++I G   HG G  ++ ++ EM  +G  P  VTF++VL ACSH GLV EG++
Sbjct: 475 -KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEE 533

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            F +M+N Y I+P +EHY CMVD+L R G+L++A   I+ MP +    +W  LL AC +H
Sbjct: 534 IFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIH 593

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           ++  I  +A ++L +L+P    +YVLLSN+ +    + +A  +R+++    + K PG + 
Sbjct: 594 KDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTL 653

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           IE NGT H F++  +SH    +I   L+ +T K++  GY   TV  + DV+EEEKE  V+
Sbjct: 654 IEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVN 713

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSEKLA+AFGLI +     IRI KNLR+C DCH A K +S+I  R I+VRDA RFH FK
Sbjct: 714 VHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK 773

Query: 710 KGNCSCMDFW 719
            G CSC D+W
Sbjct: 774 DGICSCGDYW 783


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/682 (37%), Positives = 404/682 (59%), Gaps = 34/682 (4%)

Query: 45  LISF-FALSG-CKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           LIS+   LSG  KNG L  +R LF+Q+   ++  WN ++ G++++   +EA  ++  ML 
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV 181

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           K  +S N     +V N   R+   +        +    +++++   N L+  Y     ++
Sbjct: 182 KNEISWNGLLSAYVQN--GRIEDAR-------RLFDSKMDWEIVSWNCLMGGYVRKKRLD 232

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +A  +F+    RD +S+N +I GYAQ      A  LF ++       D F + AM S   
Sbjct: 233 DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSGFV 288

Query: 222 E---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +   L++    + F  +  KN        +   A+I  Y +   +  A  +F  M  S++
Sbjct: 289 QNGMLDEAT--RIFEEMPEKN-------EVSWNAMIAGYVQSQQIEKARELFDQMP-SRN 338

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
           T++W++M++GY + G I++A+ LFD+M QRD +SW AMISGY+Q G   +AL LF KM+ 
Sbjct: 339 TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G   +   +   L +C  + AL+ GK+LH + ++   F        A++ MY KCGSI+
Sbjct: 399 DGGILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIE 457

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF  I +  K +  +N++I+G A+HG G+ ++A+F  M+ M +KPD VT V VL A
Sbjct: 458 EAFDVFEDITE--KDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSA 514

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH G V++G ++F SM  NYGI    +HY CM+DLL R GRLDEA  L++SMP+  ++ 
Sbjct: 515 CSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
            W ALL A R+H + ++GE A +K+ ++EPD+   YVLLSN+ A + RW E R++R  M 
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMR 634

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D G++K PG+S++E     H F     SHP+ + I   L+++ ++LK  G+V +T  V+ 
Sbjct: 635 DKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           DV+EEEKE ++ YHSEKLA+AFG+++      IR+ KNLR+C DCH A K +S+I +R+I
Sbjct: 695 DVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQI 754

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD+ RFH F +G+CSC D+W
Sbjct: 755 IVRDSNRFHHFSEGSCSCGDYW 776



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 192/417 (46%), Gaps = 55/417 (13%)

Query: 147 RNALIHFYSIFGYINN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
           R+ + +   I GY++N     A KVFE    RDL+S+N +++GY +      A  LF +M
Sbjct: 89  RSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM 148

Query: 202 QDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
                + D  ++ AM S   +   + + R  K F  ++ KN   +  N LL       Y 
Sbjct: 149 P----EKDVVSWNAMLSGFAQNGFVEEAR--KIFDQMLVKNE--ISWNGLLSA-----YV 195

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           + G +  A R+F +  M     +W+ ++ GY R+ +++ AR LFD+M  RD +SW  MI+
Sbjct: 196 QNGRIEDARRLFDSK-MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMIT 254

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE----- 373
           GY+Q G  S+A  LF   E L I  D     A++   V  G LD   R+ ++  E     
Sbjct: 255 GYAQNGLLSEARRLF---EELPIR-DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 374 ---------------------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
                                + +  RN      ++  YA+CG+ID A  +F ++P+  +
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQ--R 368

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
               + ++ISG AQ G  E ++ +F +M+  G   +       L +C+    +E GKQ  
Sbjct: 369 DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLH 428

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             ++  G +        ++ +  + G ++EA+ + + +  + + V W  ++A    H
Sbjct: 429 GRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARH 484



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 21/283 (7%)

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           V S+++     I+ Y + G    A  VF+ M   +ST  +++MISGY    K + AR++F
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGM-RRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++M  RDL+SW  M+SGY + G  S A  LF +M       D V+  A+L      G ++
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGFVE 170

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
             +++  Q     +  +N      ++  Y + G I+ A  +F     + + VS +N ++ 
Sbjct: 171 EARKIFDQ-----MLVKNEISWNGLLSAYVQNGRIEDARRLF-DSKMDWEIVS-WNCLMG 223

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
           G  +    + + ++F  M +     D +++  ++   +  GL+ E ++ FE +    +  
Sbjct: 224 GYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA 279

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               +  MV    ++G LDEA  + + MP + N V W A++A 
Sbjct: 280 ----WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAG 317


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 380/674 (56%), Gaps = 58/674 (8%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP--------------FVLNSCARLSSF 125
           M G+SR+ S    L    ++ ++G  SPN   FP               +L+ C   S  
Sbjct: 1   MIGFSRNLSTVSKLSHLQNLQTRG--SPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQI 58

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYS------------IFGYINNAHKVFEGSLAR 173
           K   Q+H HII+ GL    ++   LI   +            +FG +N  +         
Sbjct: 59  K---QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFL------ 109

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
               +  +I GYA       +   + +M+   + P +FTF A+F AC    +  +GKQ H
Sbjct: 110 ----WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A     +G   S++ +  ++I++Y KCG +  A +VF  M   +   +W+ +I  Y + G
Sbjct: 166 AQTIL-IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAKYG 223

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
            +E A  LFD +  +D+V+WTAM++GY+Q G   +ALE F KM+ +G+  DEVT+  V+ 
Sbjct: 224 DMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVIS 283

Query: 354 ACVGLGALDFGKRLHQQYIENVV----FGR--NIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           AC  LGA+      H  +I ++     FG   N+ + +A+IDMY+KCGS D A  VF  +
Sbjct: 284 ACAQLGAVK-----HANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM 338

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
            +  + V  ++S+I G A HG   +++ +F +M    ++P+ VTF+ +L ACSH GLVE+
Sbjct: 339 KE--RNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQ 396

Query: 468 GKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+Q F  M  + G+ P  +HY CMVDLL R G L+EA  L+++MP + N  +W ALL AC
Sbjct: 397 GRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGAC 456

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H N  I +IA  +L  LEP+   +Y+LLSN+ A   RWEE  ++RK++ + G +K PG
Sbjct: 457 RIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPG 516

Query: 587 WSYIE-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
            S+ E  NG +H F A   +HP++ EI   LK +  +L+S GY PN     +D+ ++EKE
Sbjct: 517 CSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKE 576

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  HSEKLALA+GL+ + + +TI+I KN+RIC DCH      SEI  REI+VRD +RF
Sbjct: 577 RILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRF 636

Query: 706 HLFKKGNCSCMDFW 719
           H F  G CSC +FW
Sbjct: 637 HHFHNGTCSCGNFW 650



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 172/371 (46%), Gaps = 41/371 (11%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L+++L  C    Q  Q+H  I+ +GL+      ++LI          G +   ++F Q++
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSY-PLLVFGQVN 103

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            PN F+W  ++RGY+      E+   YT M   G V P +FTF  +  +C    +   G 
Sbjct: 104 YPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDG-VGPVSFTFSALFKACGAALNMDLGK 162

Query: 130 QIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI------ 182
           Q+H   I   G   DL++ N++I  Y   G++  A KVF+    RD+VS+  LI      
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 183 -------------------------NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
                                     GYAQ   P  AL  F+KMQD  ++ D  T   + 
Sbjct: 223 GDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC +L   +       +  ++      N+++ +A+I+MY+KCG  + A +VF  M   +
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM-KER 341

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGFSQALELF 333
           +  ++SSMI GY   G+   A QLF  M + ++    V++  ++S  S  G   Q  +LF
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 334 GKMES-LGIHP 343
            KME   G+ P
Sbjct: 402 AKMEKFFGVAP 412


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 374/608 (61%), Gaps = 40/608 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           VL  C   ++ + G ++H H+IK   E  +++R  LI  Y+    + +A +V +    R+
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+  +I+GY+Q      AL LF +M  S   P+ FTF  + ++CT  +  ++G+Q H+
Sbjct: 76  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 135

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +V K      S++ + +++++MYAK G                                K
Sbjct: 136 LVIKT--SFESHIFVGSSLLDMYAKAG--------------------------------K 161

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           I  AR++FD + +RD+VS TA+ISGY+Q+G   +AL+LF +++  G+  + VT  +VL A
Sbjct: 162 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 221

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
             GL ALD G+++H  ++        + L  ++IDMY+KCGS+  +  +F  +P+  +TV
Sbjct: 222 LSGLAALDHGRQVHS-HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPE--RTV 278

Query: 415 SLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
             +N+++ G ++HGLG  ++ +F+ M E   +KPD VTF+ VL  CSHGG+ + G + F 
Sbjct: 279 ISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFY 338

Query: 474 SMLNY--GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            M+N   G +P++EHYGC+VDL  R GR++EA+  I+ MP++  + IW +LL ACR+H+N
Sbjct: 339 EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQN 398

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             IGE   ++LL++E ++  +YV+LSN+ A   RW++ R VR+LM +  + K PG S+IE
Sbjct: 399 VHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 458

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            + TLH F AS +SHP+ +E+   ++++++K+K AGYVP    V++DVD+E+KE ++  H
Sbjct: 459 LDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGH 518

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLALAFGLI +     +RI KNLRIC DCH   K LS +Y RE+ +RD  RFH    G
Sbjct: 519 SEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGG 578

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 579 TCSCGDYW 586



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 185/345 (53%), Gaps = 15/345 (4%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           + S+L    S  ++++  ++H  ++ +     +   ++LI  +    C   L  +R +  
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC---LGDARRVLD 69

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   N+  W  ++ GYS+     EAL L+  ML  G  +PN FTF  VL SC   S F+
Sbjct: 70  EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSG-TAPNEFTFATVLTSCTSSSGFQ 128

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G QIH  +IK   E  +F+ ++L+  Y+  G I  A +VF+G   RD+VS   +I+GYA
Sbjct: 129 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 188

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q+     AL LFR++Q   ++ +  T+ ++ +A + L     G+Q H+ V +    +   
Sbjct: 189 QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR--AKLPFY 246

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++L+ ++I+MY+KCG +  + R+F +M   ++  +W++M+ GY++ G    A +LF  M 
Sbjct: 247 VVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELFKLMK 305

Query: 307 QR-----DLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPD 344
           +      D V++ A++SG S  G   + LE+F +M  +  G  P+
Sbjct: 306 EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPE 350



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL  C+   A+  G+R+H   I+   +   ++L T +I +Y KC  +  A  V  ++P+
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIK-TCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 73

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + V  + ++ISG +Q G    ++ +F EM + G  P+  TF TVL +C+     + G+
Sbjct: 74  --RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 131

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           Q    ++    +  +     ++D+ A+ G++ EA  +   +P
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           M+   + ++S+L  L    +L    Q+H  ++ + L  ++   + LI  ++  G    L 
Sbjct: 208 MRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCG---SLT 264

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            SR +F  +    +  WN ++ GYS+    +EA+ L+  M  +  V P++ TF  VL+ C
Sbjct: 265 YSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGC 324

Query: 120 ARLSSFKSGCQIHCHII--KFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           +       G +I   ++  K G E ++     ++    +FG      + FE
Sbjct: 325 SHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV---DLFGRAGRVEEAFE 372


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 271/716 (37%), Positives = 410/716 (57%), Gaps = 48/716 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNGLFRSRILF 65
           ++LL LL S       L +H  +   G  H   +   + LI  +++ G  +    +R +F
Sbjct: 108 TTLLKLLVSMDLADTCLSVHAYVYKLG--HQADAFVGTALIDAYSVCGNVDA---ARQVF 162

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             I   ++  W  ++  Y+ +   +++L+L+  M   G   PNNFT    L SC  L +F
Sbjct: 163 DGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG-YRPNNFTISAALKSCNGLEAF 221

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           K G  +H   +K   + DL++  AL+  Y+  G I  A + FE     DL+ ++ +I+ Y
Sbjct: 222 KVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRY 281

Query: 186 AQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           AQ  +   AL LF +M Q S + P+ FTF ++  AC  L    +G Q H+ V K +G + 
Sbjct: 282 AQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLK-VG-LD 339

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           SN+ +  A++++YAKCG                                +IE + +LF  
Sbjct: 340 SNVFVSNALMDVYAKCG--------------------------------EIENSVKLFTG 367

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
             +++ V+W  +I GY Q+G   +AL LF  M  L I P EVT  +VLRA   L AL+ G
Sbjct: 368 STEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPG 427

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           +++H   I+ + + ++  +  ++IDMYAKCG ID A   F K+ K    VS +N++I G 
Sbjct: 428 RQIHSLTIKTM-YNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQ-DEVS-WNALICGY 484

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           + HGLG  ++ +F  M+    KP+ +TFV VL ACS+ GL+++G+  F+SML +YGI+P 
Sbjct: 485 SIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPC 544

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EHY CMV LL R G+ DEA  LI  +P+  + ++WRALL AC +H+N  +G++  Q++L
Sbjct: 545 IEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVL 604

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           ++EP   A +VLLSNM A   RW+    VRK M    ++K PG S++E+ G +H F    
Sbjct: 605 EMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGD 664

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SHP  K I  ML+ +  K + AGYVP+   V+ DV+++EKE ++  HSE+LALAFGLI 
Sbjct: 665 TSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQ 724

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             S  +IRI KNLRIC DCH   KL+S+I +REI++RD  RFH F++G CSC D+W
Sbjct: 725 IPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 216/493 (43%), Gaps = 78/493 (15%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           ++ ++  +L    R     +G  +HCHI+K G   DLF +N L++ Y  FG++ +A K+F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +     + VS+ TL  G+++  +   A  L  ++     + + F F  +      ++   
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
                HA VYK LG   ++  + TA+I+ Y+ CG ++ A +VF  +   K   +W+ M++
Sbjct: 122 TCLSVHAYVYK-LG-HQADAFVGTALIDAYSVCGNVDAARQVFDGIYF-KDMVSWTGMVA 178

Query: 288 GYTREGKIERARQLFDQMD---------------------------------------QR 308
            Y      E +  LF QM                                         R
Sbjct: 179 CYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR 238

Query: 309 DLVSWTAMISGYSQVGGFSQA-------------------------------LELFGKM- 336
           DL    A++  Y++ G  ++A                               LELF +M 
Sbjct: 239 DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR 298

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
           +S  + P+  T  +VL+AC  L  L+ G ++H   ++ V    N+F++ A++D+YAKCG 
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLK-VGLDSNVFVSNALMDVYAKCGE 357

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           I+ ++ +F    +  K    +N+II G  Q G GE ++ +F  M  + ++P  VT+ +VL
Sbjct: 358 IENSVKLFTGSTE--KNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVL 415

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
            A +    +E G+Q     +             ++D+ A+ GR+D+A      M    + 
Sbjct: 416 RASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMD-KQDE 474

Query: 517 VIWRALLAACRLH 529
           V W AL+    +H
Sbjct: 475 VSWNALICGYSIH 487


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/609 (39%), Positives = 367/609 (60%), Gaps = 43/609 (7%)

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
           P V+ +C  L     G +IHC ++K G E+D+F+  +L+H YS FG + +A K+F+   A
Sbjct: 1   PPVVKACGDL---LDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD  S+N +I+GY Q      AL +  +M+   ++ DA T  ++   C ++ D   GK  
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H  V K+   +   + +  A+INMYAK G +  A++VF  +                   
Sbjct: 118 HLYVIKH--GLEFELFVSNALINMYAKFGSLGHAQKVFGLL------------------- 156

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAV 351
                          +D+VSW  +I+GY+Q G  S+A+E++  ME    I P++ T V++
Sbjct: 157 --------------IKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSI 202

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L A   +GAL  G R+H Q I+N ++  ++F+ T +IDMY KCG +D A+S+FY++P+  
Sbjct: 203 LPAYSHVGALQQGMRIHGQVIKNCLYS-DVFVGTCLIDMYGKCGKLDDAISLFYQVPR-- 259

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K    +N++IS    HG GE ++ +FREM+   +KPD +TFV++L ACSH GLV + +  
Sbjct: 260 KNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWC 319

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  M   YGIKP ++HYGCMVDL  R G L+ A+  I+ MP   ++  W ALL ACR+H 
Sbjct: 320 FNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHG 379

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N ++G+ A ++L +++ ++  +YVLLSN+ A   +WE    VR L  D G++K PGWS I
Sbjct: 380 NIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSI 439

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
             N  +  F    ++HP+ +EI   L+D+T K+K+ GYVP+   V+ DV+E+EKE ++  
Sbjct: 440 ILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMG 499

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSE+LA+A+G+I++  K  IRI KNLR+CGDCH   K +S I  REI+VRD+ RFH FK 
Sbjct: 500 HSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKG 559

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 560 GTCSCGDYW 568



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 151/552 (27%), Positives = 254/552 (46%), Gaps = 93/552 (16%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI----SSSQLISFFALSGCKNGLFRSRILFSQID 69
           ++++C  L    +IH  ++  G    +    S   + S F L G       +R LF  + 
Sbjct: 3   VVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVG------DARKLFDDMP 56

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   WN ++ GY ++ +  EAL +   M  +G V  +  T   VL  CA++    SG 
Sbjct: 57  ARDRGSWNAMISGYCQNGNAAEALDIADEMRLEG-VKMDAITVASVLPVCAQVGDILSGK 115

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            IH ++IK GLEF+LF+ NALI+ Y+ FG + +A KVF G L +D+VS+NTLI GYAQ  
Sbjct: 116 LIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNG 174

Query: 190 EPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
               A+ ++  M++   I P+  T+V++  A + +   + G + H  V KN  C+ S++ 
Sbjct: 175 LASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN--CLYSDVF 232

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD-- 306
           + T +I+MY KCG ++ A  +F  +   K++  W++MIS Y   G  E+A +LF +M   
Sbjct: 233 VGTCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGEKALELFREMKAE 291

Query: 307 --QRDLVSWTAMISGYSQVGGFSQA-----------------------LELFGK------ 335
             + D +++ +++S  S  G  S A                       ++LFG+      
Sbjct: 292 RVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEM 351

Query: 336 ----MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
               ++ + I PD     A+L AC   G ++ GK   ++  E  V   N+     + ++Y
Sbjct: 352 AFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFE--VDSENVGYYVLLSNIY 409

Query: 392 AKCG---SIDTALSVFYKIPKNLKTVSLFNSII---------SGLAQHGLGETSIAVFRE 439
           A  G    +D   S+     + L+    ++SII         +G   H   E    ++RE
Sbjct: 410 ANVGKWEGVDDVRSLARD--RGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEE---IYRE 464

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499
           +  +  K   + +V   C       VEE ++              EH      L+    R
Sbjct: 465 LRDLTSKIKTIGYVPDFCFVLQD--VEEDEK--------------EHI-----LMGHSER 503

Query: 500 LDEAYGLIQSMP 511
           L  AYG+I + P
Sbjct: 504 LAIAYGIISTSP 515



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 156/322 (48%), Gaps = 12/322 (3%)

Query: 10  SLLALLESCKSLKQALQ---IHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           ++ ++L  C  +   L    IH  ++  GL   +  S+ LI+ +A  G    L  ++ +F
Sbjct: 97  TVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFG---SLGHAQKVF 153

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  WNTL+ GY+++    EA+ +Y  M     + PN  T+  +L + + + + 
Sbjct: 154 GLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGAL 212

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G +IH  +IK  L  D+F+   LI  Y   G +++A  +F     ++ V +N +I+ Y
Sbjct: 213 QQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCY 272

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
               +   AL LFR+M+   ++PD  TFV++ SAC+        +    ++ +  G +  
Sbjct: 273 GVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYG-IKP 331

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLF 302
           ++     +++++ + G + MA      M +    +AW ++++     G IE    A +  
Sbjct: 332 SLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERL 391

Query: 303 DQMDQRDLVSWTAMISGYSQVG 324
            ++D  ++  +  + + Y+ VG
Sbjct: 392 FEVDSENVGYYVLLSNIYANVG 413


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 374/608 (61%), Gaps = 40/608 (6%)

Query: 115  VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            VL  C   ++ + G ++H H+IK   E  +++R  LI  Y+    + +A +V +    R+
Sbjct: 483  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 175  LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
            +VS+  +I+GY+Q      AL LF +M  S   P+ FTF  + ++CT  +  ++G+Q H+
Sbjct: 543  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 602

Query: 235  VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            +V K      S++ + +++++MYAK G                                K
Sbjct: 603  LVIKT--SFESHIFVGSSLLDMYAKAG--------------------------------K 628

Query: 295  IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            I  AR++FD + +RD+VS TA+ISGY+Q+G   +AL+LF +++  G+  + VT  +VL A
Sbjct: 629  ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 688

Query: 355  CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              GL ALD G+++H  ++        + L  ++IDMY+KCGS+  +  +F  +P+  +TV
Sbjct: 689  LSGLAALDHGRQVHS-HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPE--RTV 745

Query: 415  SLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
              +N+++ G ++HGLG  ++ +F+ M E   +KPD VTF+ VL  CSHGG+ + G + F 
Sbjct: 746  ISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFY 805

Query: 474  SMLNY--GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             M+N   G +P++EHYGC+VDL  R GR++EA+  I+ MP++  + IW +LL ACR+H+N
Sbjct: 806  EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQN 865

Query: 532  AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
              IGE   ++LL++E ++  +YV+LSN+ A   RW++ R VR+LM +  + K PG S+IE
Sbjct: 866  VHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 925

Query: 592  HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
             + TLH F AS +SHP+ +E+   ++++++K+K AGYVP    V++DVD+E+KE ++  H
Sbjct: 926  LDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGH 985

Query: 652  SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
            SEKLALAFGLI +     +RI KNLRIC DCH   K LS +Y RE+ +RD  RFH    G
Sbjct: 986  SEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGG 1045

Query: 712  NCSCMDFW 719
             CSC D+W
Sbjct: 1046 TCSCGDYW 1053



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 185/345 (53%), Gaps = 15/345 (4%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           + S+L    S  ++++  ++H  ++ +     +   ++LI  +    C   L  +R +  
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC---LGDARRVLD 536

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   N+  W  ++ GYS+     EAL L+  ML  G  +PN FTF  VL SC   S F+
Sbjct: 537 EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSG-TAPNEFTFATVLTSCTSSSGFQ 595

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G QIH  +IK   E  +F+ ++L+  Y+  G I  A +VF+G   RD+VS   +I+GYA
Sbjct: 596 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 655

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q+     AL LFR++Q   ++ +  T+ ++ +A + L     G+Q H+ V +    +   
Sbjct: 656 QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR--AKLPFY 713

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++L+ ++I+MY+KCG +  + R+F +M   ++  +W++M+ GY++ G    A +LF  M 
Sbjct: 714 VVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELFKLMK 772

Query: 307 QR-----DLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPD 344
           +      D V++ A++SG S  G   + LE+F +M  +  G  P+
Sbjct: 773 EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPE 817



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL  C+   A+  G+R+H   I+   +   ++L T +I +Y KC  +  A  V  ++P+
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIK-TCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 540

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + V  + ++ISG +Q G    ++ +F EM + G  P+  TF TVL +C+     + G+
Sbjct: 541 --RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 598

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           Q    ++    +  +     ++D+ A+ G++ EA  +   +P
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           M+   + ++S+L  L    +L    Q+H  ++ + L  ++   + LI  ++  G    L 
Sbjct: 675 MRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCG---SLT 731

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            SR +F  +    +  WN ++ GYS+    +EA+ L+  M  +  V P++ TF  VL+ C
Sbjct: 732 YSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGC 791

Query: 120 ARLSSFKSGCQIHCHII--KFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           +       G +I   ++  K G E ++     ++    +FG      + FE
Sbjct: 792 SHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV---DLFGRAGRVEEAFE 839


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/625 (41%), Positives = 361/625 (57%), Gaps = 69/625 (11%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFD-------LFIRNALI--HFYSIFGYINNAHK 165
           +L  C  L + K   Q+H H+I  GL F        L I + ++  H  SIF +I N   
Sbjct: 15  LLEKCKTLDTLK---QVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNP-- 69

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCP-ALWLF-RKMQDSCIQPDAFTFVAMFSACTEL 223
                    +  YNTLI+  A +K     A  L+ R +  + ++P+ FTF ++F AC   
Sbjct: 70  --------TIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQ 121

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
              R G+  H  V K L     +  ++ A++N YAKCG                      
Sbjct: 122 PWLRHGRALHTHVLKFLEPT-CDPFVQAALLNYYAKCG---------------------- 158

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS--------QALELFGK 335
                     K+   R LF+Q+ + DL SW +++S Y    G          + L LF +
Sbjct: 159 ----------KVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIE 208

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M+   I  +EVT+VA++ AC  LGAL  G   H  Y+       N F+ TA+IDMY+KCG
Sbjct: 209 MQKSLIKANEVTLVALISACAELGALSQGAWAHV-YVLKHNLKLNHFVGTALIDMYSKCG 267

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            +D A  +F ++P   +    +N++I G A HG G  ++ +F++M L GL PD VT V  
Sbjct: 268 CLDLACQLFDQLPH--RDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVT 325

Query: 456 LCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           +C+CSH GLVEEG   FESM   YG++P++EHYGC+VDLL R GRL EA   + +MP   
Sbjct: 326 MCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKP 385

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           N+VIWR+LL A R+H N +IGE+  + L+ LEP+   +YVLLSNM A   RW++ ++VRK
Sbjct: 386 NAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRK 445

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           LM D GI K PG S +E  G +H FL   K+HP++KEI L L++M+ +L   G+ P T++
Sbjct: 446 LMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLE 505

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+FD++EEEKE  +SYHSE+LA+AF LI S     IRI KNLR+CGDCH + KL+S+IY 
Sbjct: 506 VLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYE 565

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REI+VRD  RFH FK+G CSC D+W
Sbjct: 566 REIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 212/458 (46%), Gaps = 72/458 (15%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH--------ISSSQLISFFALSGCKNGLFRSRI 63
           L LLE CK+L    Q+H  ++ +GL  H        + SS ++   ALS           
Sbjct: 13  LQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALS----------- 61

Query: 64  LFSQIDNPNIFIWNTLMRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           +F+ I NP IF++NTL+   +        A  LY+ +L+   + PN FTFP +  +C   
Sbjct: 62  IFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQ 121

Query: 123 SSFKSGCQIHCHIIKFGLE--FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              + G  +H H++KF LE   D F++ AL+++Y+  G +     +F      DL S+N+
Sbjct: 122 PWLRHGRALHTHVLKF-LEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNS 180

Query: 181 LINGYAQ--------VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           +++ Y          V      L LF +MQ S I+ +  T VA+ SAC EL     G   
Sbjct: 181 ILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWA 240

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H  V K+   +  N  + TA+I+MY+KCG +++A ++F                      
Sbjct: 241 HVYVLKH--NLKLNHFVGTALIDMYSKCGCLDLACQLF---------------------- 276

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                     DQ+  RD + + AMI G++  G   QAL+LF KM   G+ PD+VT+V  +
Sbjct: 277 ----------DQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTM 326

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKN 410
            +C  +G ++ G  + +   E  V+G    L     ++D+  + G +  A      +P  
Sbjct: 327 CSCSHVGLVEEGCDVFESMKE--VYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMK 384

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
              V ++ S++     HG  E    V +   L+ L+P+
Sbjct: 385 PNAV-IWRSLLGAARVHGNLEIGEVVLK--HLIQLEPE 419



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 29/325 (8%)

Query: 5   VLEHSSL-------LALLESCKSLKQALQIHGQIVHSGLNHHISSS-------QLISFFA 50
           VL H++L        +L ++C S  Q    HG+ +H+ +   +  +        L++++A
Sbjct: 98  VLTHTTLKPNGFTFPSLFKACGS--QPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYA 155

Query: 51  LSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSP--------QEALVLYTSMLSK 102
             G K G    R LF+QI  P++  WN+++  Y  +            E L L+  M  K
Sbjct: 156 KCG-KVG--ACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEM-QK 211

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
            ++  N  T   ++++CA L +   G   H +++K  L+ + F+  ALI  YS  G ++ 
Sbjct: 212 SLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDL 271

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F+    RD + YN +I G+A       AL LF+KM    + PD  T V    +C+ 
Sbjct: 272 ACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSH 331

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           +     G      + +  G V   +     ++++  + G +  AE     M M  +   W
Sbjct: 332 VGLVEEGCDVFESMKEVYG-VEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIW 390

Query: 283 SSMISGYTREGKIERARQLFDQMDQ 307
            S++      G +E    +   + Q
Sbjct: 391 RSLLGAARVHGNLEIGEVVLKHLIQ 415


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/687 (35%), Positives = 383/687 (55%), Gaps = 28/687 (4%)

Query: 52  SGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT 111
           S C++ L  +R +F ++   ++  WN+++  Y++   P+ AL +++ M ++    P+N T
Sbjct: 173 SRCRS-LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNIT 231

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
              VL  CA L +   G Q+HC  +   +  ++F+ N L+  Y+  G ++ A+ VF    
Sbjct: 232 LVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMS 291

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA------------ 219
            +D+VS+N ++ GY+Q+     A+ LF KMQ+  I+ D  T+ A  S             
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351

Query: 220 -CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
            C ++    I      ++    GC     L+    I+ YA    +++ +      G    
Sbjct: 352 VCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN-----GHGDE 406

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKM 336
               + +I  Y +  K++ AR +FD +   +RD+V+WT MI GYSQ G  ++ALEL  +M
Sbjct: 407 NMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM 466

Query: 337 --ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
             E     P+  T+   L AC  L AL  GK++H   + N      +F++  +IDMYAKC
Sbjct: 467 FEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKC 526

Query: 395 GSIDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           GSI  A  VF  +  KN  T   + S+++G   HG GE ++ +F EM  +G K DGVT +
Sbjct: 527 GSISDARLVFDNMMAKNEVT---WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583

Query: 454 TVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            VL ACSH G++++G ++F  M   +G+ P  EHY C+VDLL R GRL+ A  LI+ MP 
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           +   V+W A L+ CR+H   ++GE A +K+ +L  +H   Y LLSN+ A   RW++  ++
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           R LM   G++K PG S++E       F    K+HP  KEI  +L D   ++K  GYVP T
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPET 763

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
              + DVD+EEK+ ++  HSEKLALA+G++ +     IRITKNLR+CGDCH AF  +S I
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +I++RD+ RFH FK G+CSC  +W
Sbjct: 824 IDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 167/536 (31%), Positives = 278/536 (51%), Gaps = 32/536 (5%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
            +  CK++ Q   IH +++  G+     +S LIS +   GC +        F   D   +
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSD-AGV 92

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
           + WN+L+R Y  +    + L L+  M S    +P+N+TFPFV  +C  +SS + G   H 
Sbjct: 93  YHWNSLIRSYGDNGCANKCLYLFGLMHSLSW-TPDNYTFPFVFKACGEISSVRCGESAHA 151

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
             +  G   ++F+ NAL+  YS    +++A KVF+     D+VS+N++I  YA++ +P  
Sbjct: 152 LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV 211

Query: 194 ALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFH--AVVYKNLGCVGSNMLLK 250
           AL +F +M +    +PD  T V +   C  L    +GKQ H  AV  + +     NM + 
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMI----QNMFVG 267

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR-- 308
             +++MYAKCG+M+ A  VFS M + K   +W++M++GY++ G+ E A +LF++M +   
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSV-KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKI 326

Query: 309 --DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             D+V+W+A ISGY+Q G   +AL +  +M S GI P+EVT+++VL  C  +GAL  GK 
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386

Query: 367 LHQQYIENVV------FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +H   I+  +       G    +   +IDMYAKC  +DTA ++F  +    + V  +  +
Sbjct: 387 IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVM 446

Query: 421 ISGLAQHGLGETSIAVFREM--ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
           I G +QHG    ++ +  EM  E    +P+  T    L AC+    +  GKQ       Y
Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA----Y 502

Query: 479 GIKPQMEHY-----GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            ++ Q          C++D+ A+ G + +A  +  +M    N V W +L+    +H
Sbjct: 503 ALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMH 557


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 380/674 (56%), Gaps = 58/674 (8%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP--------------FVLNSCARLSSF 125
           M G+SR+ S    L    ++ ++G  SPN   FP               +L+ C   S  
Sbjct: 1   MIGFSRNLSTVSKLSHLQNLQTRG--SPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQI 58

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYS------------IFGYINNAHKVFEGSLAR 173
           K   Q+H HII+ GL    ++   LI   +            +FG +N  +         
Sbjct: 59  K---QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFL------ 109

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
               +  +I GYA       +   + +M+   + P +FTF A+F AC    +  +GKQ H
Sbjct: 110 ----WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A     +G   S++ +  ++I++Y KCG +  A +VF  M   +   +W+ +I  Y + G
Sbjct: 166 AQTIL-IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAKYG 223

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
            +E A  LFD +  +D+V+WTAM++GY+Q G   +ALE F KM+ +G+  DEVT+  V+ 
Sbjct: 224 DMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVIS 283

Query: 354 ACVGLGALDFGKRLHQQYIENVV----FGR--NIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           AC  LGA+      H  +I ++     FG   N+ + +A+IDMY+KCGS D A  VF  +
Sbjct: 284 ACAQLGAVK-----HANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM 338

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
            +  + V  ++S+I G A HG   +++ +F +M    ++P+ VTF+ +L ACSH GLVE+
Sbjct: 339 KE--RNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQ 396

Query: 468 GKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+Q F  M  + G+ P  +HY CMVDLL R G L+EA  L+++MP + N  +W ALL AC
Sbjct: 397 GRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGAC 456

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H N  I +IA  +L  LEP+   +Y+LLSN+ A   RWEE  ++RK++ + G +K PG
Sbjct: 457 RIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPG 516

Query: 587 WSYIE-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
            S+ E  NG +H F A   +HP++ EI   LK +  +L+S GY PN     +D+ ++EKE
Sbjct: 517 CSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKE 576

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  HSEKLALA+GL+ + + +TI+I KN+RIC DCH      SEI  REI+VRD +RF
Sbjct: 577 RILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRF 636

Query: 706 HLFKKGNCSCMDFW 719
           H F  G CSC +FW
Sbjct: 637 HHFHNGTCSCGNFW 650



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 204/478 (42%), Gaps = 80/478 (16%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L+++L  C    Q  Q+H  I+ +GL+      ++LI          G +   ++F Q++
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSY-PLLVFGQVN 103

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            PN F+W  ++RGY+      E+   YT M   G V P +FTF  +  +C    +   G 
Sbjct: 104 YPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDG-VGPVSFTFSALFKACGAALNMDLGK 162

Query: 130 QIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI------ 182
           Q+H   I   G   DL++ N++I  Y   G++  A KVF+    RD+VS+  LI      
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 183 -------------------------NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
                                     GYAQ   P  AL  F+KMQD  ++ D  T   + 
Sbjct: 223 GDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC +L   +       +  ++      N+++ +A+I+MY+KCG  + A +VF  M   +
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVM-KER 341

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGFSQALELF 333
           +  ++SSMI GY   G+   A QLF  M + ++    V++  ++S  S  G   Q  +LF
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 334 GKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
            KME   G+ P          AC                               ++D+  
Sbjct: 402 AKMEKFFGVAPSPDHY-----AC-------------------------------MVDLLG 425

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           + G ++ AL +   +P       ++ +++     H  G   IA     EL  L+P+G+
Sbjct: 426 RAGCLEEALDLVKTMPME-PNGGVWGALLGACRIH--GNPDIAQIAANELFKLEPNGI 480


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/756 (33%), Positives = 428/756 (56%), Gaps = 70/756 (9%)

Query: 4   LVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           ++L+ S+   L+ +C     +K   ++HG+I+  G   + S ++ L+  ++  G    L 
Sbjct: 129 VLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCG---KLK 185

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
               LF ++ + ++  WNT++  Y      +EAL L+  ML  G++ P+  T   ++++C
Sbjct: 186 EVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVL-PDEITMVSLVSTC 244

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH--------------- 164
           A+L   + G ++H +I+   L     + N L+  YS  G ++ AH               
Sbjct: 245 AKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVL 304

Query: 165 ------------------KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
                             ++F+    R LVS+ T+++GY Q    C +L LF++M+   +
Sbjct: 305 WTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENV 364

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHA--VVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            PD    V + SAC  L D  +G+  HA  V Y  L     +  L  A++++YAKCG ++
Sbjct: 365 IPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGML----VDGFLGNALLDLYAKCGKLD 420

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A R F  +   KS A+W+SM+ G+ R G +++AR  F+++ ++D+VSW  M++ Y +  
Sbjct: 421 EALRTFEQLP-CKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHD 479

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
            F+++ E+F KM+S  + PD+ T++++L +C  +GAL+ G  ++  YIE    G +  L 
Sbjct: 480 LFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNV-YIEKNEIGIDAMLG 538

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           TA+IDMY KCG ++ A  +F +I +  K V ++ ++++  A  G    +I ++ EME  G
Sbjct: 539 TALIDMYGKCGCVEMAYEIFTQIIE--KNVFVWTAMMAAYAMEGQALEAIDLYLEMEERG 596

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
           +KPD VTF+ +L ACSHGGLV+EG ++F  + + Y I P + HYGCMVDLL R G L+E 
Sbjct: 597 VKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEET 656

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
              I+ MP + +  IW +L+ ACR H N ++ E A ++L++++P +   +VLLSN+ A+ 
Sbjct: 657 VKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADA 716

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RW++  +VR  + ++G+ K PG++ IE NG +H F+AS      + +I  ML+D+  +L
Sbjct: 717 GRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLV---SADILCMLQDIERRL 773

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
                          + ++E     S HSE+LA+AFGLIN++    IR+  ++R+C DCH
Sbjct: 774 ---------------LVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCH 818

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              KL+S+ Y REI++RD  RFH F  G+CSC D+W
Sbjct: 819 SVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 175/589 (29%), Positives = 298/589 (50%), Gaps = 47/589 (7%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           VL    ++ LL+SC ++++   IH  ++ + L H    +  +  F LS   N L  +  +
Sbjct: 32  VLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLS--VNNLDCAHQI 89

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            S    P   IWNTL+    +   PQE L  Y  M+++G++   + TF F++++C +   
Sbjct: 90  LSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDIS-TFHFLIHACCKNFD 148

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            K G ++H  I+K G   +  + N L+  YS  G +    ++FE    RD++S+NT+I+ 
Sbjct: 149 VKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISC 208

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y        AL LF +M  S + PD  T V++ S C +L D  +GK+ H  +  N   + 
Sbjct: 209 YVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIR 268

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFD 303
            ++L    +++MY+KCG M+ A  + S    S+     W++++SGY +  KI++ARQLFD
Sbjct: 269 GSLL--NCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFD 326

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M++R LVSWT M+SGY Q G + ++LELF +M    + PDEV +V VL ACV L   D 
Sbjct: 327 KMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDL 386

Query: 364 GKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNL---------- 411
           G+ +H  +I  V +G  +  FL  A++D+YAKCG +D AL  F ++P             
Sbjct: 387 GRSVH-AFI--VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDG 443

Query: 412 -------------------KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
                              K +  +N++++   +H L   S  +F +M+   +KPD  T 
Sbjct: 444 FCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTL 503

Query: 453 VTVLCACSHGGLVEEG--KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           +++L +C+  G +  G     +      GI   +     ++D+  + G ++ AY +   +
Sbjct: 504 ISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG--TALIDMYGKCGCVEMAYEIFTQI 561

Query: 511 PYDANSVIWRALLAACRLHRNA--KIGEIAGQKLLDLEPDHGAHYVLLS 557
             + N  +W A++AA  +   A   I      +   ++PDH     LL+
Sbjct: 562 -IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLA 609


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/710 (37%), Positives = 403/710 (56%), Gaps = 50/710 (7%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS----SQLISFFALSGCKNGLFRSRILFSQIDN 70
           + S  +L+   ++H    H+G    IS     + LI  +A  G  +    +R++F  + +
Sbjct: 244 ITSTGALEWVKEVHK---HAGKAGFISDLRVGNALIHMYAKCGSID---DARLVFDGMCD 297

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            ++  WN ++ G +++    EA  ++  M  +G V P++ T+  +LN+     +++   +
Sbjct: 298 RDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV-PDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H H ++ GL  DL + +A +H Y   G I++A  +F+    R++ ++N +I G AQ K 
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF +M+     PDA TFV + SA          K+ H+    + G V  ++ + 
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI-DAGLV--DLRVG 473

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+++MYAKCG         +TM                        A+Q+FD M +R++
Sbjct: 474 NALVHMYAKCG---------NTM-----------------------YAKQVFDDMVERNV 501

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
            +WT MISG +Q G   +A  LF +M   GI PD  T V++L AC   GAL++ K +H  
Sbjct: 502 TTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSH 561

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            + N     ++ +  A++ MYAKCGS+D A  VF  + +  + V  +  +I GLAQHG G
Sbjct: 562 AV-NAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLE--RDVYSWTVMIGGLAQHGRG 618

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK-QFFESMLNYGIKPQMEHYGC 489
             ++ +F +M+L G KP+G +FV VL ACSH GLV+EG+ QF     +YGI+P MEHY C
Sbjct: 619 LDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTC 678

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R G+L+EA   I +MP +     W ALL AC  + N ++ E A ++ L L+P  
Sbjct: 679 MVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKS 738

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
            + YVLLSN+ A T  WE+   VR +M   GI+K PG S+IE +  +H F+    SHP++
Sbjct: 739 ASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPES 798

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           KEI   LKD+  +LK+ GYVP+T  V+ + D+E KE  +  HSEKLA+ +GL+++  +  
Sbjct: 799 KEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNP 858

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IR+ KNLR+C DCH A K +S++  REI+ RDA RFH FK G CSC D+W
Sbjct: 859 IRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 240/477 (50%), Gaps = 51/477 (10%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           + L++L++C    SLK   +IH  I+ SG    +   + L++ +   G  +    ++++F
Sbjct: 32  TYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSID---DAQLIF 88

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   N+  W  ++ G +     QEA   +  M  +G + PN++T+  +LN+ A   + 
Sbjct: 89  DKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI-PNSYTYVSILNANASAGAL 147

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           +   ++H H +  GL  DL + NAL+H Y+  G I++A  VF+G + RD+ S+  +I G 
Sbjct: 148 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG- 244
           AQ      A  LF +M+     P+  T++++ +A    +   +  ++   V+K+ G  G 
Sbjct: 208 AQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGAL--EWVKEVHKHAGKAGF 265

Query: 245 -SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S++ +  A+I+MYAKCG ++ A  VF  M   +   +W++MI G               
Sbjct: 266 ISDLRVGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMIGG--------------- 309

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                            +Q G   +A  +F KM+  G  PD  T +++L   V  GA ++
Sbjct: 310 ----------------LAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEW 353

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            K +H+  +E V    ++ + +A + MY +CGSID A  +F K+   ++ V+ +N++I G
Sbjct: 354 VKEVHKHAVE-VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA--VRNVTTWNAMIGG 410

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           +AQ   G  ++++F +M   G  PD  TFV +L A     + EE  ++ + + +Y I
Sbjct: 411 VAQQKCGREALSLFLQMRREGFFPDATTFVNILSA----NVGEEALEWVKEVHSYAI 463



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 219/465 (47%), Gaps = 52/465 (11%)

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ GY+     ++A+ +Y+ M  +G   PN  T+  +L +C    S K G +IH HII+ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREG-GQPNEITYLSILKACCSPVSLKWGKKIHAHIIQS 59

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G + D+ +  AL++ Y   G I++A  +F+  + R+++S+  +I G A       A   F
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +MQ     P+++T+V++ +A          K+ H+    N G +  ++ +  A+++MYA
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV-NAG-LALDLRVGNALVHMYA 177

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           K G ++ A  VF  M + +   +W+ MI G  + G+ +                      
Sbjct: 178 KSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQ---------------------- 214

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC--VGLGALDFGKRLHQQYIENVV 376
                    +A  LF +ME  G  P+  T +++L A      GAL++ K +H ++     
Sbjct: 215 ---------EAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVH-KHAGKAG 264

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           F  ++ +  A+I MYAKCGSID A  VF  +    + V  +N++I GLAQ+G G  +  +
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMCD--RDVISWNAMIGGLAQNGCGHEAFTI 322

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
           F +M+  G  PD  T++++L      G  E  K+  +  +  G+   +      V +  R
Sbjct: 323 FLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIR 382

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
            G +D+A  +   +    N   W           NA IG +A QK
Sbjct: 383 CGSIDDAQLIFDKLAV-RNVTTW-----------NAMIGGVAQQK 415


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 397/712 (55%), Gaps = 48/712 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRI-L 64
           +L  +L+ C   K+LKQ   IH  I+  G   +      L+  ++    K GL    I +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYS----KCGLAIDAIGV 371

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  I  P+I +W+ L+    +    +E++ L+  ++  G   PN +T   +L++     +
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTGN 430

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  IH  + K+G E D+ + NAL+  Y   G +++  K++E  + RDL+S+N  ++G
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
                     L +F  M +    P+ +TF+++  +C+ L D   G+Q HA + KN   + 
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ--LD 548

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            N  + TA+I+MYAKC  +                                E A   F++
Sbjct: 549 DNNFVCTALIDMYAKCMYL--------------------------------EDADVAFNR 576

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  RDL +WT +I+ Y+Q     +AL  F +M+  G+ P+E T+   L  C  L +L+ G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           ++LH    ++     ++F+ +A++DMYAKCG ++ A ++F  + +  +    +N+II G 
Sbjct: 637 QQLHSMVFKSGHVS-DMFVGSALVDMYAKCGCMEEAEALFEALIR--RDTIAWNTIICGY 693

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           AQ+G G  ++  FR M   G+ PDGVTF  +L ACSH GLVEEGK+ F SM  ++GI P 
Sbjct: 694 AQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPT 753

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           ++H  CMVD+L R G+ DE    IQ M    N++IW  +L A ++H N  +GE A  KL 
Sbjct: 754 VDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLF 813

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L+P+  + Y+LLSN+ A   RW++ ++VR LM   G++K PG S++E NG +H F++  
Sbjct: 814 ELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHD 873

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SHPQ +EI L L ++  +L S  YVP T  V+ +V E EK+  + +HSE+LAL F LI+
Sbjct: 874 YSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIS 933

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           + S++ IRI KNLRIC DCH   K +S I  +EI+VRD  RFH FK G CSC
Sbjct: 934 TSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 157/618 (25%), Positives = 280/618 (45%), Gaps = 80/618 (12%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLN--HHISSSQLISFFALSGCKNGLF 59
           K+ +  +SS+L    S +SL  A  IHG IV   +N   H+  S L++ +A   C+   +
Sbjct: 109 KKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVS-LVNVYA--KCRYSAY 165

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R++ +++ + ++  W  L++G        +++ L+  M ++GI+ PN FT    L +C
Sbjct: 166 -ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIM-PNEFTLATGLKAC 223

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           +   +   G Q+H    K GL  DLF+ +AL+  Y+  G I  A K+F G   ++ V++N
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF-------------------------- 213
            L+NGYAQ  +    L LF  M +  ++ + FT                           
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 214 ------------VAMFSACTELNDP----RIGKQFHAVVYKNL-GCVGSN---------- 246
                       V M+S C    D     +  K+   VV+  L  C+             
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 247 --MLLKTAVINMYAKCGLMNMAERVFS------------TMGMSKSTAAWSSMISGYTRE 292
             M L   + N Y  C L++ A    +              G     A  +++++ Y + 
Sbjct: 404 HLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN 463

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +    +L++ M  RDL+SW A +SG    G + + L +F  M   G  P+  T +++L
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISIL 523

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            +C  L  + +G+++H   I+N +   N F+ TA+IDMYAKC  ++ A   F ++  +++
Sbjct: 524 GSCSCLFDVHYGRQVHAHIIKNQLDDNN-FVCTALIDMYAKCMYLEDADVAFNRL--SVR 580

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            +  +  II+  AQ   GE ++  FR+M+  G+KP+  T    L  CS    +E G+Q  
Sbjct: 581 DLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLH 640

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
             +   G    M     +VD+ A+ G ++EA  L +++    +++ W  ++     +   
Sbjct: 641 SMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQG 699

Query: 533 KIGEIAGQKLLD--LEPD 548
                A + +LD  + PD
Sbjct: 700 NKALTAFRMMLDEGISPD 717


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/766 (33%), Positives = 416/766 (54%), Gaps = 76/766 (9%)

Query: 22  KQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           K   Q+H Q V  GL  H+S  + L+  +  +   N     R +F ++   N+  W +L+
Sbjct: 110 KLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVND---GRRVFDEMGERNVVSWTSLL 166

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
            GYS +        L+  M  +G++ PN +T   V+ +         G Q+H  ++K G 
Sbjct: 167 AGYSWNGLYGYVWELFCQMQYEGVL-PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGF 225

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           E  + + N+LI  YS  G + +A  VF+    RD V++N++I GY +  +      +F K
Sbjct: 226 EEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNK 285

Query: 201 MQDSCIQPDAFTFVAM--------------------------------------FSACTE 222
           MQ + ++P   TF ++                                       S C E
Sbjct: 286 MQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKE 345

Query: 223 LNDP-------RIGKQFHAVVYKNLGC--------------------VGSNMLLKTAVIN 255
           ++D          GK   +      GC                    V  N    +A++ 
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           ++    +  M   V  T    +S++  ++++  Y + G    A ++F+ ++ +DL++W+A
Sbjct: 406 VHYPVFVSEMHAEVIKT-NYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSA 464

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG-LGALDFGKRLHQQYIEN 374
           M++GY+Q G   +A +LF ++   GI P+E T  +V+ AC     A + GK+ H  Y   
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHA-YAIK 523

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
           +     + +++A++ MYAK G+ID+A  VF K  K    VS +NS+ISG +QHG  + ++
Sbjct: 524 MRLNNALCVSSALVTMYAKRGNIDSAHEVF-KRQKERDLVS-WNSMISGYSQHGQAKKAL 581

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDL 493
            VF EM+   +  D VTF+ V+ AC+H GLVE+G+++F SM+N + I P M+HY CM+DL
Sbjct: 582 EVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDL 641

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
            +R G L++A G+I  MP+   + +WR LL A R+HRN ++GE+A +KL+ L+P+  A Y
Sbjct: 642 YSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAY 701

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLLSNM A    W+E   VRKLMD   ++K PG+S+IE     + FLA   +HP + +I 
Sbjct: 702 VLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIY 761

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
             L +++++LK AGY P+T  V  D+++E+KET++S+HSE+LA+AFGLI +  +  I+I 
Sbjct: 762 SKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIV 821

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR+CGDCH   KL+S + +R I+VRD+ RFH FK G CSC D+W
Sbjct: 822 KNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 188/380 (49%), Gaps = 37/380 (9%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N L+  YSR    +EAL L+ S+L   +  P+  T   V N CA     K G Q+HC  +
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSL-QPDESTLSCVFNICAGSLDGKLGRQVHCQCV 120

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           KFGL   + +  +L+  Y     +N+  +VF+    R++VS+ +L+ GY+          
Sbjct: 121 KFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWE 180

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           LF +MQ   + P+ +T   + +A        IG Q HA+V K+                 
Sbjct: 181 LFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH----------------- 223

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
                            G  ++   ++S+IS Y+R G +  AR +FD+M+ RD V+W +M
Sbjct: 224 -----------------GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSM 266

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I+GY + G   +  E+F KM+  G+ P  +T  +V+++C  L  L   K +  + +++  
Sbjct: 267 IAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKS-G 325

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           F  +  + TA++   +KC  +D ALS+F  + +    VS + ++ISG  Q+G  + ++ +
Sbjct: 326 FTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVS-WTAMISGCLQNGGNDQAVNL 384

Query: 437 FREMELMGLKPDGVTFVTVL 456
           F +M   G+KP+  T+  +L
Sbjct: 385 FSQMRREGVKPNHFTYSAIL 404



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 198/410 (48%), Gaps = 54/410 (13%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS---FFALSGCKNGLFRSRIL 64
           H +  ++++SC SL++ L +   +    L    ++ Q++      ALS CK  +  +  L
Sbjct: 295 HMTFASVIKSCASLRE-LALVKLMQCKALKSGFTTDQIVITALMVALSKCKE-MDDALSL 352

Query: 65  FSQIDN-PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           FS ++   N+  W  ++ G  ++    +A+ L++ M  +G V PN+FT+  +L       
Sbjct: 353 FSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG-VKPNHFTYSAILT--VHYP 409

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            F S  ++H  +IK   E    +  AL+  Y   G   +A KVFE   A+DL++++ ++ 
Sbjct: 410 VFVS--EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLA 467

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC-TELNDPRIGKQFHAVVYK---- 238
           GYAQ  E   A  LF ++    I+P+ FTF ++ +AC +       GKQFHA   K    
Sbjct: 468 GYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLN 527

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           N  CV S      A++ MYAK G ++ A  VF      +   +W+SMISGY++ G+ ++A
Sbjct: 528 NALCVSS------ALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAKKA 580

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            ++FD+M +R++                                 D VT + V+ AC   
Sbjct: 581 LEVFDEMQKRNM-------------------------------DVDAVTFIGVITACTHA 609

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           G ++ G++     I +      +   + +ID+Y++ G ++ A+ +  ++P
Sbjct: 610 GLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMP 659



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 205/455 (45%), Gaps = 59/455 (12%)

Query: 150 LIHFYSIFGYINN--------AHKVFEGSLAR--DLVSYNTLINGYAQVKEPCPALWLFR 199
            IH+     +I+N        AH +F+    R   L  +N L+  Y++ K+   AL LF 
Sbjct: 23  FIHYSISLKFISNTVLCVPHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFV 82

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
            +  S +QPD  T   +F+ C    D ++G+Q H    K  G V  ++ + T++++MY K
Sbjct: 83  SLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK-FGLV-DHVSVGTSLVDMYMK 140

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
              +N   RVF  MG  ++  +W+S+++GY                      SW      
Sbjct: 141 TENVNDGRRVFDEMG-ERNVVSWTSLLAGY----------------------SWN----- 172

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
               G +    ELF +M+  G+ P+  T+  V+ A V  G +  G ++H   +++  F  
Sbjct: 173 ----GLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH-GFEE 227

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
            I +  ++I +Y++ G +  A  VF K+   ++    +NS+I+G  ++G       +F +
Sbjct: 228 AIPVFNSLISLYSRLGMLRDARDVFDKM--EIRDWVTWNSMIAGYVRNGQDLEVFEIFNK 285

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499
           M+L G+KP  +TF +V+ +C+    +   K      L  G          ++  L++   
Sbjct: 286 MQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKE 345

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLH--RNAKIGEIAGQKLLDLEPDH-------G 550
           +D+A  L   M    N V W A+++ C  +   +  +   +  +   ++P+H        
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405

Query: 551 AHY-VLLSNMLAETYR--WEEARQVRKLMDDSGIQ 582
            HY V +S M AE  +  +E +  V   + D+ ++
Sbjct: 406 VHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVK 440


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/610 (39%), Positives = 372/610 (60%), Gaps = 11/610 (1%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
           + L +CAR  S   G ++HCHIIK G++    + N LI+ Y   G I +A  +F     R
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
           D +S+ +++    Q   P   L +F  M  QD  +QPD + F  +  AC  L   + GKQ
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDG-LQPDHYVFACLVKACAILGAMKQGKQ 126

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            HA     +  V  + ++K+++++MYAKCGL ++   VF ++  SK++ +W++MISGY +
Sbjct: 127 VHATFI--VSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSIS-SKNSISWTAMISGYAQ 183

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVA 350
            G+   A QLF +M  ++L+SWTA+ISG  Q G +  +  LF +M S GI   D   + +
Sbjct: 184 SGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSS 243

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           ++ A   L  L  GK++H   I  + +  ++F++ A++DMYAKC  +  A  +F ++ + 
Sbjct: 244 IIGASANLAVLGLGKQIHCLVIL-LGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQ- 301

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + +  + SII G AQHGL E +++++  M   GLKP+ VTFV ++ ACSH GLV +G+ 
Sbjct: 302 -RDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRY 360

Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           FF SM+ +YGI P ++HY C++DLL+R G L+EA  LI++MP+  +   W ALL+AC  H
Sbjct: 361 FFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHH 420

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           RN  IG      LL L+P+  + Y+LLSN+ A    WE   +VR+LM    ++K PG+S 
Sbjct: 421 RNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSC 480

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           I        FLA + SHP  +EI  +L+++  ++K  GY+P+T  V+ D++++EKE  + 
Sbjct: 481 IVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLF 540

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           +HSE+LA+A+GL+       + I KNLR+CGDCH   K +S I +REI+VRDA R+H FK
Sbjct: 541 WHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFK 600

Query: 710 KGNCSCMDFW 719
            G CSC +FW
Sbjct: 601 DGKCSCNNFW 610



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 117/522 (22%), Positives = 236/522 (45%), Gaps = 80/522 (15%)

Query: 8   HSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI 63
           +S L+  L++C   +S     ++H  I+ +G++   S S+ LI+ +     K GL +  +
Sbjct: 3   YSHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYG----KCGLIQDAL 58

Query: 64  -LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF+Q+ + +   W +++   ++++ P   L ++ +M  +  + P+++ F  ++ +CA L
Sbjct: 59  NLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAIL 118

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            + K G Q+H   I   +  D  ++++L+  Y+  G  +    VF+   +++ +S+  +I
Sbjct: 119 GAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMI 178

Query: 183 NGYAQVKEPCPALWLFRKMQ-----------DSCIQP----DAF-TFVAMFSACTELNDP 226
           +GYAQ      A+ LF+KM               +Q     D+F  F+ M S   ++ DP
Sbjct: 179 SGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDP 238

Query: 227 RI----------------GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            I                GKQ H +V   L    S++ +  A+++MYAKC  +  A+++F
Sbjct: 239 FILSSIIGASANLAVLGLGKQIHCLVI--LLGYESSLFVSNALVDMYAKCSDVLAAKKIF 296

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             M + +   +W+S+I G  + G  E                                AL
Sbjct: 297 GRM-VQRDIVSWTSIIVGTAQHGLAEE-------------------------------AL 324

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
            L+ +M S G+ P+EVT V ++ AC  +G +  G+      I++     ++   T ++D+
Sbjct: 325 SLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDL 384

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DG 449
            ++ G ++ A ++   +P      + + +++S    H    T I +     L+ LKP D 
Sbjct: 385 LSRSGHLEEAENLIKAMPFKPDEAT-WAALLSACNHH--RNTLIGIRVADHLLSLKPEDP 441

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            T++ +    +   + E   +    M    +K +   Y C+V
Sbjct: 442 STYILLSNIYASAAMWESVSKVRRLMAAMEVKKE-PGYSCIV 482


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/791 (33%), Positives = 422/791 (53%), Gaps = 85/791 (10%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGL 58
           M R  +  ++LLAL+    +     + H Q++ +G  H +++   ++   F +   ++  
Sbjct: 1   MIRGDISRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRH-- 58

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +R LF  +  P+IF++N L++G+S S     ++  YT +L    +SP+NFT+ F +++
Sbjct: 59  --ARALFFSVPKPDIFLFNVLIKGFSFSPDAS-SISFYTHLLKNTTLSPDNFTYAFAISA 115

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
                    G  +H H +  G + +LF+ +AL+  Y  F  +  A KVF+    RD V +
Sbjct: 116 SP---DDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLW 172

Query: 179 NTLINGYAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR--------- 227
           NT+I G   V+  C   ++ +F+ M    ++ D+ T   +  A  E+ + +         
Sbjct: 173 NTMITGL--VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLA 230

Query: 228 --IGKQFHAVVYKNLGCVGS-----------------------NMLLKTAVINMYAKCGL 262
             +G  F   V   L  V S                       N L+     N   +C +
Sbjct: 231 LKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAV 290

Query: 263 MNMAERVFSTMGMSKST---------------------------------AAWSSMISGY 289
               E + S   +S ST                                 +  +++ + Y
Sbjct: 291 KYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIY 350

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
           +R  +I+ ARQLFD+  ++ + +W AMISGY+Q G    A+ LF +M +    P+ VT+ 
Sbjct: 351 SRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTIT 410

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++L AC  LGAL FGK +HQ  I++    +NI+++TA+IDMYAKCG+I  A S  + +  
Sbjct: 411 SILSACAQLGALSFGKSVHQ-LIKSKNLEQNIYVSTALIDMYAKCGNISEA-SQLFDLTS 468

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
              TV+ +N++I G   HG G+ ++ +F EM  +G +P  VTF++VL ACSH GLV EG 
Sbjct: 469 EKNTVT-WNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGD 527

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           + F +M+N Y I+P  EHY CMVD+L R G+L++A   I+ MP +    +W  LL AC +
Sbjct: 528 EIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMI 587

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H++  +  +A ++L +L+P +  +YVLLSN+ +    + +A  VR+ +    + K PG +
Sbjct: 588 HKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCT 647

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE NGT H F+   +SH QT  I   L+++T K++  GY   TV  + DV+EEEKE + 
Sbjct: 648 LIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMF 707

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           + HSEKLA+AFGLI +     IRI KNLR+C DCH A K +S+I  R I+VRDA RFH F
Sbjct: 708 NVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHF 767

Query: 709 KKGNCSCMDFW 719
           K G CSC D+W
Sbjct: 768 KDGICSCGDYW 778


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/601 (41%), Positives = 358/601 (59%), Gaps = 15/601 (2%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGY--INNAHKVFEGSLARDLVSYNTLINGYA- 186
           QIH H IK G          L+ F ++     I  A K F      +  S+NT+I   A 
Sbjct: 33  QIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALAD 92

Query: 187 -------QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
                   V      L+    + D  ++P+ FTF  +  AC +L     GKQ H  V K 
Sbjct: 93  SDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVK- 151

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           LG V S+  +++ ++ +Y  CG M  A  +F    +  +   W+ MI GY R G +  +R
Sbjct: 152 LGLV-SDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASR 210

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LFD M  + +VSW  MISG +Q G F +A+E+F  M+   + P+ VT+V+VL A   LG
Sbjct: 211 ELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLG 270

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           A++ GK +H    +N +   ++ L +A+IDMY+KCGSID A+ VF  I +N K    +++
Sbjct: 271 AIELGKWVHLFAEKNEIEIDDV-LGSALIDMYSKCGSIDKAVQVFEGI-RNKKNPITWSA 328

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           II GLA HG    ++  F  M+  G+ P  V ++ VL ACSH GLVEEG+  +  M+N  
Sbjct: 329 IIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIV 388

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G+ P++EHYGCMVDLL R G L+EA  LI +MP   + VI +ALL AC++H N ++GE  
Sbjct: 389 GLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERI 448

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            + L+   P     YV LSNM A    WE   +VR  M +  I+K PG S+IE +G +H 
Sbjct: 449 AKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHE 508

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           FL    SHP+ + I  ML++M+ +L+S GY PNT QV+ ++DE+EK++ + YHSEK+A+A
Sbjct: 509 FLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIA 568

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGLI++R +  ++I KNLR+C DCH + KL+S+IY R+I+VRD  RFH F+ G+CSCMD+
Sbjct: 569 FGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDY 628

Query: 719 W 719
           W
Sbjct: 629 W 629


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/728 (34%), Positives = 410/728 (56%), Gaps = 56/728 (7%)

Query: 10  SLLALLESCKSLK--QALQIHGQIVHSGLNHHISSSQLI-SFFALSGCKNGLFRSRILFS 66
           +L++++ +C +L   + L +  Q+   GL     +S +I +  A+ G    L  S++L  
Sbjct: 114 TLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLG 173

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
                ++  WNT++    +++   EAL     M+ +G V P+ FT   VL +C+ L   +
Sbjct: 174 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSHLEMLR 232

Query: 127 SGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           +G ++H + +K G L+ + F+ +AL+  Y     + +  +VF+G   R +  +N +I GY
Sbjct: 233 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 292

Query: 186 AQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +Q +    AL LF  M++S  +  ++ T   +  AC         +  H  V K      
Sbjct: 293 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR----- 347

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                                        G+ +     ++++  Y+R GKI+ A ++F +
Sbjct: 348 -----------------------------GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 378

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL-----------GIHPDEVTMVAVLR 353
           M+ RDLV+W  MI+GY        AL L  KM++L            + P+ +T++ +L 
Sbjct: 379 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 438

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           +C  L AL  GK +H   I+N +   ++ + +A++DMYAKCG +  +  VF +IP+  K 
Sbjct: 439 SCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ--KN 495

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  +N II     HG G+ +I + R M + G+KP+ VTF++V  ACSH G+V+EG + F 
Sbjct: 496 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 555

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAACRLHRN 531
            M  +YG++P  +HY C+VDLL R GR+ EAY L+  MP D N    W +LL A R+H N
Sbjct: 556 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 615

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            +IGEIA Q L+ LEP+  +HYVLL+N+ +    W++A +VR+ M + G++K PG S+IE
Sbjct: 616 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
           H   +H+F+A   SHPQ++++   L+ +  +++  GYVP+T  V+ +V+E+EKE ++  H
Sbjct: 676 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGH 735

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFG++N+     IR+ KNLR+C DCHLA K +S+I  REI++RD  RFH FK G
Sbjct: 736 SEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNG 795

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 796 TCSCGDYW 803



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 200/426 (46%), Gaps = 43/426 (10%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNA 163
           + P+N+ FP +L + A L   + G QIH H+ KFG   D + + N L++ Y   G     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
           +KVF+    R+ VS+N+LI+     ++   AL  FR M D  ++P +FT V++ +AC+ L
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 224 NDPR---IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             P    +GKQ HA   +     G    L + +IN                         
Sbjct: 126 PMPEGLMMGKQVHAYGLRK----GE---LNSFIIN------------------------- 153

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
              ++++ Y + GK+  ++ L      RDLV+W  ++S   Q     +ALE   +M   G
Sbjct: 154 ---TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 210

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PDE T+ +VL AC  L  L  GK LH   ++N     N F+ +A++DMY  C  + + 
Sbjct: 211 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 270

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCAC 459
             VF  +    + + L+N++I+G +Q+   + ++ +F  M E  GL  +  T   V+ AC
Sbjct: 271 RRVFDGMFD--RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 328

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
              G     +     ++  G+         ++D+ +R G++D A  +   M  D + V W
Sbjct: 329 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTW 387

Query: 520 RALLAA 525
             ++  
Sbjct: 388 NTMITG 393



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 9/215 (4%)

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           LGI PD     A+L+A   L  ++ GK++H    +      ++ +   ++++Y KCG   
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
               VF +I +    VS +NS+IS L      E ++  FR M    ++P   T V+V+ A
Sbjct: 64  AVYKVFDRISER-NQVS-WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTA 121

Query: 459 CSHGGLVEEGKQFFESMLNYGI-KPQMEHY--GCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           CS+  +  EG    + +  YG+ K ++  +    +V +  + G+L  +  L+ S     +
Sbjct: 122 CSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRD 179

Query: 516 SVIWRALLAA-CRLHRNAKIGEIAGQKLLD-LEPD 548
            V W  +L++ C+  +  +  E   + +L+ +EPD
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/616 (41%), Positives = 371/616 (60%), Gaps = 20/616 (3%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF------GYINNAHK 165
            P     C++    K   QIH  ++K GL  D +   A+  F S         ++  A  
Sbjct: 46  MPNTETRCSKQEELK---QIHARMLKTGLIQDSY---AITKFLSCCISSTSSDFLPYAQI 99

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
           VF+G    D   +N +I G++   EP  +L L+++M       +A+TF ++  AC+ L+ 
Sbjct: 100 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSA 159

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
                Q HA + K LG   +++    ++IN YA  G   +A  +F  +       +W+S+
Sbjct: 160 LEETTQIHAQITK-LG-YENDVYAVNSLINSYAATGNFKLAHLLFDRIP-KPDAVSWNSV 216

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I GY + GK++ A  LF +M +++ +SWT MISGY Q G   +AL+LF +M++  + PD 
Sbjct: 217 IKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDN 276

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           V++   L AC  LGAL+ GK +H  Y+       +  L   +IDMYAKCG +  AL VF 
Sbjct: 277 VSLANALSACAQLGALEQGKWIHS-YLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFK 335

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
            I +  K+V  + ++ISG A HG G  +I+ F EM+ MG+KP+ +TF TVL ACS+ GLV
Sbjct: 336 NIQR--KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLV 393

Query: 466 EEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           EEGK  F +M  +Y +KP +EHYGC+VDLL+R G LDEA   IQ MP   N+VIW ALL 
Sbjct: 394 EEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLK 453

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           ACR+H+N ++GE  G+ L+ ++P HG  YV  +N+ A   +W++A + R+LM + G+ K 
Sbjct: 454 ACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKV 513

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN-TVQVVFDVDEEE 643
           PG S I   GT H FLA  +SHP+ ++I+   K M  KL+  GYVP     ++  VD++E
Sbjct: 514 PGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDE 573

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           +ET+V  HSEKLA+ +GLI ++   TIRI KNLR+C DCH   KL+S+IY+R+I++RD  
Sbjct: 574 RETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRT 633

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH F+ G CSC D+W
Sbjct: 634 RFHHFRDGKCSCGDYW 649



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 199/428 (46%), Gaps = 77/428 (17%)

Query: 18  CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGC-----KNGLFRSRILFSQIDNPN 72
           C   ++  QIH +++ +GL   I  S  I+ F LS C      + L  ++I+F   D P+
Sbjct: 53  CSKQEELKQIHARMLKTGL---IQDSYAITKF-LSCCISSTSSDFLPYAQIVFDGFDRPD 108

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-FTFPFVLNSCARLSSFKSGCQI 131
            F+WN ++RG+S SD P+ +L+LY  ML     +P+N +TFP +L +C+ LS+ +   QI
Sbjct: 109 TFLWNLMIRGFSCSDEPERSLLLYQRMLC--CSAPHNAYTFPSLLKACSNLSALEETTQI 166

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  I K G E D++  N+LI+ Y+  G    AH +F+     D VS+N++I GYA+  + 
Sbjct: 167 HAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKM 226

Query: 192 CPALWLFRK-------------------------------MQDSCIQPDAFTFVAMFSAC 220
             AL LFRK                               MQ+S ++PD  +     SAC
Sbjct: 227 DIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSAC 286

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            +L     GK  H+ + K    +  + +L   +I+MYAKCG M  A  VF  +   KS  
Sbjct: 287 AQLGALEQGKWIHSYLTKTR--IRMDSVLGCVLIDMYAKCGDMGEALEVFKNI-QRKSVQ 343

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           AW+++ISGY   G                                  +A+  F +M+ +G
Sbjct: 344 AWTALISGYAYHGH-------------------------------GREAISKFMEMQKMG 372

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I P+ +T   VL AC   G ++ GK +      +      I     V+D+ ++ G +D A
Sbjct: 373 IKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEA 432

Query: 401 LSVFYKIP 408
                ++P
Sbjct: 433 KRFIQEMP 440



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 144/323 (44%), Gaps = 35/323 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           SLL    +  +L++  QIH QI   G  + + + + LI+ +A +G       + +LF +I
Sbjct: 149 SLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATG---NFKLAHLLFDRI 205

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS---------------------- 106
             P+   WN++++GY+++     AL L+  M+ K  +S                      
Sbjct: 206 PKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFH 265

Query: 107 --------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
                   P+N +    L++CA+L + + G  IH ++ K  +  D  +   LI  Y+  G
Sbjct: 266 EMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCG 325

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            +  A +VF+    + + ++  LI+GYA       A+  F +MQ   I+P+  TF  + +
Sbjct: 326 DMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLT 385

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC+       GK     + ++   +   +     V+++ ++ GL++ A+R    M +  +
Sbjct: 386 ACSYTGLVEEGKLIFYNMERDYN-LKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPN 444

Query: 279 TAAWSSMISGYTREGKIERARQL 301
              W +++        IE   ++
Sbjct: 445 AVIWGALLKACRIHKNIELGEEI 467


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/649 (38%), Positives = 374/649 (57%), Gaps = 51/649 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WN  +R  +      E++ LY SML  G  SP+ F+FPF+L SCA LS   SG Q+HCH+
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSG-SSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS--YNTLINGYAQVKEPCP 193
            K G E + F+  ALI  Y   G + +A KVFE +     +S  YN LI+GY    +   
Sbjct: 80  TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A ++FR+M+++ +  D+ T + +   CT      +G+  H    K  G + S + +  + 
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVK--GGLDSEVAVLNSF 197

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I MY KC                                G +E  R+LFD+M  + L++W
Sbjct: 198 ITMYMKC--------------------------------GSVEAGRRLFDEMPVKGLITW 225

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            A+ISGYSQ G     LEL+ +M+S G+ PD  T+V+VL +C  LGA   G  +  + +E
Sbjct: 226 NAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEV-GKLVE 284

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           +  F  N+F++ A I MYA+CG++  A +VF  +P  +K++  + ++I     HG+GE  
Sbjct: 285 SNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP--VKSLVSWTAMIGCYGMHGMGEIG 342

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVD 492
           + +F +M   G++PDG  FV VL ACSH GL ++G + F +M   Y ++P  EHY C+VD
Sbjct: 343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 402

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R GRLDEA   I+SMP + +  +W ALL AC++H+N  + E+A  K+++ EP++  +
Sbjct: 403 LLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGY 462

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVL+SN+ +++   E   ++R +M +   +K PG+SY+EH G +H FLA  +SH QT+E+
Sbjct: 463 YVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEV 522

Query: 613 ELMLKDM-TMKLKSAGYVPNTVQVVFDVDE-EEKETVVSYHSEKLALAFGLINSRSKETI 670
             ML ++ T  ++ AG +        D D  EE  +    HSE+LA+AFG++NS     I
Sbjct: 523 HRMLDELETSVMELAGNM--------DCDRGEEVSSTTREHSERLAIAFGILNSIPGTEI 574

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + KNLR+C DCH+  K +S+I  R+ +VRDA RFH FK G CSC D+W
Sbjct: 575 LVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 4/279 (1%)

Query: 27  IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
           +HGQ V  GL+  ++   L SF  +      +   R LF ++    +  WN ++ GYS++
Sbjct: 178 LHGQCVKGGLDSEVAV--LNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQN 235

Query: 87  DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
               + L LY  M S G V P+ FT   VL+SCA L + K G ++   +   G   ++F+
Sbjct: 236 GLAYDVLELYEQMKSSG-VCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFV 294

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            NA I  Y+  G +  A  VF+    + LVS+  +I  Y         L LF  M    I
Sbjct: 295 SNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGI 354

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           +PD   FV + SAC+       G +    + +    +       + ++++  + G ++ A
Sbjct: 355 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK-LEPGPEHYSCLVDLLGRAGRLDEA 413

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                +M +    A W +++        ++ A   F ++
Sbjct: 414 MEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKV 452


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/624 (37%), Positives = 371/624 (59%), Gaps = 43/624 (6%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           +L  G ++P    +  ++ +CA+  +      IH H+ +  L  D F+ N+LIH Y   G
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            +++A  VF+G   RD+VS+  LI GYAQ   P  AL L   M  +  +P  FTF +   
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLK 171

Query: 219 ACTELNDPRIGKQFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           A        IG+Q HA+  K NL     ++ + +A+++MYA+C  M+MA RV        
Sbjct: 172 AAGACGGRGIGEQMHALAVKYNLD---EDVYVGSALLDMYARCQQMDMAIRV-------- 220

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                                   FD +D ++ VSW A+I+G+++ G     L  F +M+
Sbjct: 221 ------------------------FDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQ 256

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCG 395
             G      T  +V  A   +GAL+ G+ +H   I++   G+ +  F+   ++ MYAK G
Sbjct: 257 RNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKS---GQKLTAFVANTILGMYAKSG 313

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
           S+  A  VF ++ +  + +  +N++++  AQ+GLG+ ++A F E+   G++ + +TF++V
Sbjct: 314 SMVDARKVFDRVDQ--RDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSV 371

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           L ACSHGGLV+EGKQ+F+ M +Y ++P+++HY   VDLL R G L EA   +  MP +  
Sbjct: 372 LTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPT 431

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
           + +W ALL ACR+H+NAKIG+ A   + +L+P+     VLL N+ A T +W++A +VRK+
Sbjct: 432 AAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKM 491

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           M  +G++K P  S++E   ++H F+A   +HP+++EI  M +++  ++K AGYVPNT  V
Sbjct: 492 MKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYV 551

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
           +  + E+E+ET + YHSEK+ALAF LIN  +  TIRI KN+RICGDCH AF+ +SE+++R
Sbjct: 552 LLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKR 611

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           EI+VRD  RFH F  G+CSC D+W
Sbjct: 612 EIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 196/423 (46%), Gaps = 46/423 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFS 66
           HS + A  +S K+L  A  IH  +  S L        L++      CK G +  +R +F 
Sbjct: 66  HSIITACAQS-KNLAGARAIHSHLSRSRL---AGDGFLLNSLIHMYCKCGAVSDARHVFD 121

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            I   ++  W  L+ GY+++D P EAL L   ML +    P+ FTF   L +        
Sbjct: 122 GIPTRDVVSWTYLITGYAQNDMPAEALGLLPDML-RARFRPSGFTFTSFLKAAGACGGRG 180

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H   +K+ L+ D+++ +AL+  Y+    ++ A +VF+   +++ VS+N LI G+A
Sbjct: 181 IGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFA 240

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  +    L  F +MQ +      FT+ ++FSA   +     G+  HA + K+    G  
Sbjct: 241 RKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKS----GQK 296

Query: 247 M--LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +   +   ++ MYAK G M  A +V                                FD+
Sbjct: 297 LTAFVANTILGMYAKSGSMVDARKV--------------------------------FDR 324

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +DQRDLV+W  M++ ++Q G   +A+  F ++   GI  +++T ++VL AC   G +  G
Sbjct: 325 VDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEG 384

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K+     +++      I    + +D+  + G +  AL   +K+P    T +++ +++   
Sbjct: 385 KQYFDM-MKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPME-PTAAVWGALLGAC 442

Query: 425 AQH 427
             H
Sbjct: 443 RMH 445


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/782 (34%), Positives = 425/782 (54%), Gaps = 80/782 (10%)

Query: 10  SLLALLESCKSLKQAL---QIHGQIVHSGLNH---HISSSQLISFFALSGCKNGLFRSRI 63
           +LL +++ C S+   +   Q+H   V  G +H    + +S +  +       +G    R 
Sbjct: 57  ALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDG----RK 112

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   N+  W +L+ GY ++    + + L+  M ++G V PN FTF  VL+  A   
Sbjct: 113 VFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEG-VWPNPFTFSSVLSMVASQG 171

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G  +H   IKFG    +F+ N+L++ Y+  G +  A  VF     RD+VS+NTL+ 
Sbjct: 172 MVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMA 231

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN---- 239
           G         AL LF   + S       T+  + + C  L    + +Q H+ V K+    
Sbjct: 232 GLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHS 291

Query: 240 --------------------------LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
                                     L     N++  TA+I+   + G + +A  +FS M
Sbjct: 292 YGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRM 351

Query: 274 ---GMSKSTAAWSSMIS-------------------------------GYTREGKIERAR 299
              G++ +   +S++++                                Y++    E A 
Sbjct: 352 REDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEAL 411

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F  +DQ+D+VSW+AM++ Y+Q G  + A   F KM   G+ P+E T+ + + AC    
Sbjct: 412 SIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPA 471

Query: 360 A-LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           A +D G++ H   I++      + +++A++ MYA+ GSI+ A  VF +  +  + +  +N
Sbjct: 472 AGVDLGRQFHAISIKHRCHDA-LCVSSALVSMYARKGSIENAQCVFER--QTDRDLLSWN 528

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
           S++SG AQHG  + ++ VFR+ME+ G+  DG+TF++V+  C+H GLVEEG+Q+F+ M+ +
Sbjct: 529 SMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRD 588

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           YGI P M+HY CMVDL +R G+LDE   LI+ MP+ A   IWRALL ACR+H+N ++G++
Sbjct: 589 YGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKL 648

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A +KLL LEP   A YVLLSN+ +   +W+E  +VRKLMD   ++K  G S+I+    +H
Sbjct: 649 AAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVH 708

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+AS KSHP +++I   L+ MT KLK  GY P+T  V  DV E++KE +++ HSE+LAL
Sbjct: 709 FFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLAL 768

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI +     + I KNLR+ GD H   K++SEI  REI++RD  RFH FK G CSC D
Sbjct: 769 AFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGD 828

Query: 718 FW 719
           FW
Sbjct: 829 FW 830


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/782 (33%), Positives = 420/782 (53%), Gaps = 83/782 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
           + S+L L    KSL+   ++H  I+ +G++      ++L+  +   G    L + R +F 
Sbjct: 97  YCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCG---DLVQGRKIFD 153

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +I N  +F+WN LM  Y++  + +E++ L+  M   G+V  N +TF  VL   A L   K
Sbjct: 154 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVK 212

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
              ++H +++K G   +  + N+LI  Y  FG + +AH +F+     D+VS+N++ING  
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 272

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                   L +F +M    ++ D  T V++  AC  + +  +G+  H    K   C    
Sbjct: 273 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVK--ACFSEE 330

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++    +++MY+KCG +N A  VF  MG   +  +W+S+I+ Y REG    A  LFD+M 
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQ 389

Query: 307 Q--------------------------RDLVSW-------------TAMISGYSQVG--- 324
                                      RD+ S+              A+I+ Y++ G   
Sbjct: 390 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 449

Query: 325 ----------------------GFSQ------ALELFGKMESLGIHPDEVTMVAVLRACV 356
                                 G+SQ      ALELF  M+     PD++TM  VL AC 
Sbjct: 450 EARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACA 508

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
           GL ALD G+ +H   +    F  ++ +  A++DMYAKCG +  A  +F  IPK  K +  
Sbjct: 509 GLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFDMIPK--KDLIS 565

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +  +I+G   HG G  +I+ F EM + G++PD  +F  +L ACSH GL+ EG +FF SM 
Sbjct: 566 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMR 625

Query: 477 NY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           N  G++P++EHY C+VDLLAR G L +AY  I+SMP   ++ IW  LL+ CR+H + K+ 
Sbjct: 626 NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 685

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           E   + + +LEPD+  +YV+L+N+ AE  +WEE +++RK M   G ++ PG S+IE  G 
Sbjct: 686 EKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGK 745

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
            + F+A    HPQ K+I+++L  +TM++++  Y      V+ + D+ EKE +   HSEK 
Sbjct: 746 FNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKS 805

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+AFG++N     T+R++KN R+CGDCH   K +S+  + EI++RD+ RFH FK G CSC
Sbjct: 806 AMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSC 865

Query: 716 MD 717
            D
Sbjct: 866 RD 867


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/702 (35%), Positives = 413/702 (58%), Gaps = 50/702 (7%)

Query: 23  QALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           + LQ+H  +V +GL+  I  S+ LI+ +   G    + ++RILF + +  ++  WN+++ 
Sbjct: 216 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCG---NVRKARILFDKTEVKSVVTWNSMIS 272

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           GY+ +    EAL ++ SM     V  +  +F  ++  CA L   +   Q+HC ++K+G  
Sbjct: 273 GYAANGLDLEALGMFYSM-RLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFV 331

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           FD  IR AL+  YS    + +A ++F E     ++VS+  +I+G+ Q      A+ LF +
Sbjct: 332 FDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M+   ++P+ FT+  + +A   ++   +    HA V K                      
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVISPSEV----HAQVVKT--------------------- 426

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
                           +S+   ++++  Y + GK++ A ++F  +D +D+V+W+AM++GY
Sbjct: 427 -------------NYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGY 473

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVVFGR 379
           +Q G    A+++F ++   G+ P+E T  ++L  C    A +  GK+ H   I++ +   
Sbjct: 474 AQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL-DS 532

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           ++ +++A++ MYAK G I++A  VF +  +  K +  +NS+ISG AQHG    ++ VF+E
Sbjct: 533 SLCVSSALLTMYAKKGHIESAEEVFKR--QREKDLVSWNSMISGYAQHGQAMKALDVFKE 590

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDG 498
           M+   +K D VTF+ V  AC+H GLVEEG+++F+ M+ +  I P  EH  CMVDL +R G
Sbjct: 591 MKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 650

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           +L++A  +I +MP  A S IWR +LAACR+H+  ++G +A +K++ + P+  A YVLLSN
Sbjct: 651 QLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSN 710

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           M AE+  W+E  +VRKLM++  ++K PG+S+IE     + FLA  +SHP   +I + L+D
Sbjct: 711 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLED 770

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           ++ +LK  GY P+T  V+ D+D+E KE V++ HSE+LA+AFGLI +     + I KNLR+
Sbjct: 771 LSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRV 830

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK-GNCSCMDFW 719
           CGDCH+  KL+++I  REI+VRD+ RFH F   G CSC DFW
Sbjct: 831 CGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 203/428 (47%), Gaps = 49/428 (11%)

Query: 6   LEHSSLLALLESCKSLKQ---ALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFR 60
           L  SS  ++++ C +LK+     Q+H  +V  G   + +I ++ ++++   S C   L  
Sbjct: 297 LSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAY---SKCMAMLDA 353

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            R+        N+  W  ++ G+ ++D  +EA+ L++ M  KG V PN FT+  +L +  
Sbjct: 354 LRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKG-VRPNEFTYSVILTALP 412

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            +S      ++H  ++K   E    +  AL+  Y   G ++ A KVF G   +D+V+++ 
Sbjct: 413 VISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSA 468

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR-IGKQFHAVVYKN 239
           ++ GYAQ  E   A+ +F ++    ++P+ FTF ++ + C         GKQFH    K+
Sbjct: 469 MLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKS 528

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              + S++ + +A++ MYAK G +  AE VF      K   +W+SMISGY + G+  +A 
Sbjct: 529 R--LDSSLCVSSALLTMYAKKGHIESAEEVFKRQ-REKDLVSWNSMISGYAQHGQAMKAL 585

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F +M +R                                +  D VT + V  AC   G
Sbjct: 586 DVFKEMKKRK-------------------------------VKMDSVTFIGVFAACTHAG 614

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            ++ G++     + +          + ++D+Y++ G ++ A+ V   +P NL   +++ +
Sbjct: 615 LVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMP-NLAGSTIWRT 673

Query: 420 IISGLAQH 427
           I++    H
Sbjct: 674 ILAACRVH 681



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 216/469 (46%), Gaps = 44/469 (9%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L+ +  LF +  + +   + +L+ G+SR    QEA  L+ ++   G+   +   F  VL 
Sbjct: 47  LYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGM-EMDCSIFSSVLK 105

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
             A L     G Q+HC  IKFG   D+ +  +L+  Y       +   VF+    R++V+
Sbjct: 106 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVT 165

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           + TLI+GYA+       L LF +MQD   QP++FTF A      E      G Q H VV 
Sbjct: 166 WTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 225

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           KN   +   + +  ++IN+Y KCG +  A  +F    + KS   W+SMISGY   G    
Sbjct: 226 KN--GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV-KSVVTWNSMISGYAANG---- 278

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
                      DL                 +AL +F  M    +   E +  ++++ C  
Sbjct: 279 ----------LDL-----------------EALGMFYSMRLNHVRLSESSFASIIKLCAN 311

Query: 358 LGALDFGKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
           L  L F ++LH   ++   VF +NI   TA++  Y+KC ++  AL +F K    L  V  
Sbjct: 312 LKELRFTEQLHCSVVKYGFVFDQNI--RTALMVAYSKCMAMLDALRLF-KETGFLGNVVS 368

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           + ++ISG  Q+   E ++ +F EM+  G++P+  T+  +L A       E   Q  ++  
Sbjct: 369 WTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT-- 426

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           NY     +     ++D   + G++DEA  +   +  + + V W A+LA 
Sbjct: 427 NYERSSTVGT--ALLDAYVKLGKVDEAAKVFSGID-NKDIVAWSAMLAG 472



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 178/400 (44%), Gaps = 41/400 (10%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           AH +F+ S  RD  SY +L+ G+++      A  LF  +Q   ++ D   F ++      
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L D   G+Q H    K                                   G     +  
Sbjct: 110 LCDELFGRQLHCQCIK----------------------------------FGFLDDVSVG 135

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +S++  Y +    +  R +FD+M +R++V+WT +ISGY++     + L LF +M+  G  
Sbjct: 136 TSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQ 195

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+  T  A L      G    G ++H   ++N +  + I ++ ++I++Y KCG++  A  
Sbjct: 196 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL-DKTIPVSNSLINLYLKCGNVRKARI 254

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           +F K    +K+V  +NS+ISG A +GL   ++ +F  M L  ++    +F +++  C++ 
Sbjct: 255 LFDKT--EVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANL 312

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
             +   +Q   S++ YG          ++   ++   + +A  L +   +  N V W A+
Sbjct: 313 KELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAM 372

Query: 523 LAACRLHRNAK---IGEIAGQKLLDLEPDHGAHYVLLSNM 559
           ++   L  + K   +G  +  K   + P+   + V+L+ +
Sbjct: 373 ISGF-LQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL 411



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           G     ++  A  LFD+   RD  S+T+++ G+S+ G   +A  LF  ++ LG+  D   
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
             +VL+    L    FG++LH Q I+   F  ++ + T+++D Y K  +     +VF ++
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIK-FGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEM 158

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
            +  + V  + ++ISG A++ L E  + +F  M+  G +P+  TF   L   +  G+   
Sbjct: 159 KE--RNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGR 216

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G Q    ++  G+   +     +++L  + G + +A  L       +  V W ++++ 
Sbjct: 217 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISG 273


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/719 (36%), Positives = 409/719 (56%), Gaps = 58/719 (8%)

Query: 11   LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRSRILFSQID 69
            +L+++     L+   QIHG +V SGL+  +S    LI+ +  +G    + R+R +F Q++
Sbjct: 912  MLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGS---VSRARTVFWQMN 968

Query: 70   NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
              ++  WNT++ G + S   + ++ ++  +L  G++ P+ FT   VL +C   SS   GC
Sbjct: 969  EVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLL-PDQFTVASVLRAC---SSLGGGC 1024

Query: 130  ----QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
                QIH   +K G+  D F+   LI  YS  G +  A  +F      DL S+N +++GY
Sbjct: 1025 HLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGY 1084

Query: 186  AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---NLGC 242
                +   AL L+  MQ+S  + +  T      A   L   + GKQ  AVV K   NL  
Sbjct: 1085 IVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL-- 1142

Query: 243  VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
               ++ + + V++MY KCG M                                E AR++F
Sbjct: 1143 ---DLFVISGVLDMYLKCGEM--------------------------------ESARRIF 1167

Query: 303  DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
            +++   D V+WT MISG  + G    AL  +  M    + PDE T   +++AC  L AL+
Sbjct: 1168 NEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALE 1227

Query: 363  FGKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             G+++H   ++ N  F  + F+ T+++DMYAKCG+I+ A  +F +   N   ++ +N++I
Sbjct: 1228 QGRQIHANTVKLNCAF--DPFVMTSLVDMYAKCGNIEDARGLFKRT--NTSRIASWNAMI 1283

Query: 422  SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
             GLAQHG  E ++  F EM+  G+ PD VTF+ VL ACSH GLV E  + F SM   YGI
Sbjct: 1284 VGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGI 1343

Query: 481  KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            +P++EHY C+VD L+R GR+ EA  +I SMP++A++ ++R LL ACR+  + + G+   +
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1403

Query: 541  KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            KLL LEP   A YVLLSN+ A   +WE     R +M  + ++K PG+S+++    +H F+
Sbjct: 1404 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFV 1463

Query: 601  ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
            A  +SH +T  I   ++ +  +++  GY+P+T   + DV+EE+KE  + YHSEKLA+A+G
Sbjct: 1464 AGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYG 1523

Query: 661  LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            L+ +    T+R+ KNLR+CGDCH A K +S+++ RE+++RDA RFH F+ G CSC D+W
Sbjct: 1524 LMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 176/352 (50%), Gaps = 19/352 (5%)

Query: 4    LVLEHSSLLALLESCKSLKQ----ALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNG 57
            L+ +  ++ ++L +C SL      A QIH   + +G  L+  +S++ LI  ++ SG    
Sbjct: 1003 LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTT-LIDVYSKSG---K 1058

Query: 58   LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
            +  +  LF   D  ++  WN +M GY  S    +AL LY  M   G    N  T      
Sbjct: 1059 MEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG-ERANQITLANAAK 1117

Query: 118  SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
            +   L   K G QI   ++K G   DLF+ + ++  Y   G + +A ++F    + D V+
Sbjct: 1118 AAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVA 1177

Query: 178  YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
            + T+I+G  +  +   AL+ +  M+ S +QPD +TF  +  AC+ L     G+Q HA   
Sbjct: 1178 WTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTV 1237

Query: 238  KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
            K L C     ++ T++++MYAKCG +  A  +F     S+  A+W++MI G  + G  E 
Sbjct: 1238 K-LNCAFDPFVM-TSLVDMYAKCGNIEDARGLFKRTNTSR-IASWNAMIVGLAQHGNAEE 1294

Query: 298  ARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHPD 344
            A Q F++M  R    D V++  ++S  S  G  S+A E F  M+ + GI P+
Sbjct: 1295 ALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPE 1346



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 125/553 (22%), Positives = 249/553 (45%), Gaps = 66/553 (11%)

Query: 26   QIHGQIVHSGLNHHIS---SSQLISFFALSGCKNGLFRSRILFSQIDNP--NIFIWNTLM 80
            + H +I+ SG  HH     ++ LI+ ++  G    L  +R LF    +   ++  WN ++
Sbjct: 647  RAHARILTSG--HHPDRFLTNNLITMYSKCGS---LSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 81   RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
              ++  D  ++   L+  +L +  VS    T   V   C   +S  +   +H + +K GL
Sbjct: 702  SAHA--DKARDGFHLF-RLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGL 758

Query: 141  EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
            ++D+F+  AL++ Y+ FG I  A  +F+G   RD+V +N ++  Y        AL LF +
Sbjct: 759  QWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSE 818

Query: 201  MQDSCIQPDAFTFVA---------------------------MFSACTELNDP------- 226
               + ++PD  T                              M+    + +D        
Sbjct: 819  FNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTL 878

Query: 227  ----RIGKQFHAV------VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
                + G+ + AV      +   + C G   ++  +V+       L      +    G+ 
Sbjct: 879  SWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLD 938

Query: 277  KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
            +  +  + +I+ Y + G + RAR +F QM++ DLVSW  MISG +  G    ++ +F  +
Sbjct: 939  QVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDL 998

Query: 337  ESLGIHPDEVTMVAVLRACVGL-GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
               G+ PD+ T+ +VLRAC  L G      ++H   ++  V   + F++T +ID+Y+K G
Sbjct: 999  LRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV-LDSFVSTTLIDVYSKSG 1057

Query: 396  SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
             ++ A  +F  + ++   ++ +N+++ G    G    ++ ++  M+  G + + +T    
Sbjct: 1058 KMEEAEFLF--VNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLAN- 1114

Query: 456  LCACSHGGLV--EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
              A + GGLV  ++GKQ    ++  G    +     ++D+  + G ++ A  +   +P  
Sbjct: 1115 -AAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-S 1172

Query: 514  ANSVIWRALLAAC 526
             + V W  +++ C
Sbjct: 1173 PDDVAWTTMISGC 1185



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 12/180 (6%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++LR  +    L  GKR H + + +     + FLT  +I MY+KCGS+ +A  +F   P 
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSG-HHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD 689

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + +  +N+I+S  A          +FR +    +     T   V   C    L+    
Sbjct: 690 TSRDLVTWNAILSAHADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMC----LLSASP 743

Query: 470 QFFESMLNYGIKPQMEH----YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              ES+  Y +K  ++      G +V++ A+ GR+ EA  L   M    + V+W  ++ A
Sbjct: 744 SAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGL-RDVVLWNVMMKA 802


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/608 (39%), Positives = 361/608 (59%), Gaps = 10/608 (1%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L  CAR  S  +  ++H  IIK G +    + N L+  Y   G I  A ++F+    RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           VS+ +++  + +   P   L +   M     +QPD F F  +  AC+ L   R+GKQ HA
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
               +  C   + ++K+++I+MY KCG  + A  VF ++ + K++ +W+SMISGY R G+
Sbjct: 130 RFMLSFFC--DDEVVKSSLIDMYTKCGQPDDARAVFDSI-LFKNSVSWTSMISGYARSGR 186

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVAVLR 353
              A  LF Q   R+L SWTA+ISG  Q G    +  LF +M   GI   D + + +V+ 
Sbjct: 187 KCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVG 246

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
            C  L  L+ GK++H   I  + F   +F++ A++DMYAKC  I  A  +FY++P+  K 
Sbjct: 247 GCANLALLELGKQIHGLVIA-LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPR--KD 303

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + SII G AQHG  E ++ ++ EM L  +KP+ VTFV +L ACSH GLV  G++ F 
Sbjct: 304 VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFR 363

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM  +Y I P ++HY C++DLL+R G LDEA  L+  +P+  +   W +LL+AC  H N 
Sbjct: 364 SMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNL 423

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G     ++LDL+P+  + Y+LLSN+ A    W    +VRKLM    ++K PG+S I+ 
Sbjct: 424 EMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDF 483

Query: 593 NGTLHRFLASKK-SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
                 F A +   HP   EI  +LKD+  +++  GYVPNT  V++D++++EKE  + +H
Sbjct: 484 GKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWH 543

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+A+GL+ +     IRI KNLRICGDCH   K +S+I +REIMVRDA R+H FK+G
Sbjct: 544 SERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEG 603

Query: 712 NCSCMDFW 719
            CSC DFW
Sbjct: 604 KCSCNDFW 611



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 229/521 (43%), Gaps = 95/521 (18%)

Query: 19  KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIW 76
           +S   A ++H QI+ +G +   + S+ L+  +     K GL    + LF ++ N +   W
Sbjct: 17  QSASAAGELHSQIIKAGFDKSSLLSNTLLDVYG----KCGLIPQALQLFDEMPNRDHVSW 72

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +++  ++++  P+  L +  +M +   + P++F F  ++ +C+ L   + G Q+H    
Sbjct: 73  ASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA--- 129

Query: 137 KFGLEF---DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
           +F L F   D  ++++LI  Y+  G  ++A  VF+  L ++ VS+ ++I+GYA+    C 
Sbjct: 130 RFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 194 AL-------------W------------------LFRKMQDSCIQ-PDAFTFVAMFSACT 221
           A+             W                  LF +M+   I   D     ++   C 
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L    +GKQ H +V   LG   S + +  A+++MYAKC  +  A+ +F  M   K   +
Sbjct: 250 NLALLELGKQIHGLVIA-LG-FESCLFISNALVDMYAKCSDILAAKDIFYRMP-RKDVIS 306

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W+S+I G  + GK E A  L+D+M          ++S                      I
Sbjct: 307 WTSIIVGTAQHGKAEEALTLYDEM----------VLS---------------------RI 335

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+EVT V +L AC   G +  G+ L +    +     ++   T ++D+ ++ G +D A 
Sbjct: 336 KPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAE 395

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFV---TVLC 457
           ++  KIP      + + S++S   +H   E  + +     ++ LKP D  T++    V  
Sbjct: 396 NLLDKIPFKPDEPT-WASLLSACMRHNNLEMGVRIAD--RVLDLKPEDPSTYILLSNVYA 452

Query: 458 ACSHGGLVEEGKQFFESM----------LNYGIKPQMEHYG 488
                G V + ++   SM          +++G   Q+ H G
Sbjct: 453 GAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAG 493



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 160/363 (44%), Gaps = 27/363 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SSL+ +   C     A  +   I+     + +S + +IS +A SG K     +  LF Q 
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSIL---FKNSVSWTSMISGYARSGRK---CEAMDLFLQA 197

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F W  L+ G  +S     +  L+  M  +GI   +      V+  CA L+  + G
Sbjct: 198 PVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELG 257

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH  +I  G E  LFI NAL+  Y+    I  A  +F     +D++S+ ++I G AQ 
Sbjct: 258 KQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQH 317

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   AL L+ +M  S I+P+  TFV +  AC+       G++    +  +   +  ++ 
Sbjct: 318 GKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYS-INPSLQ 376

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM--- 305
             T ++++ ++ G ++ AE +   +        W+S++S   R   +E   ++ D++   
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL 436

Query: 306 ---DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
              D    +  + + +G    G  S+  +L   ME              +R   G  ++D
Sbjct: 437 KPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSME--------------VRKEPGYSSID 482

Query: 363 FGK 365
           FGK
Sbjct: 483 FGK 485


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/728 (34%), Positives = 410/728 (56%), Gaps = 56/728 (7%)

Query: 10  SLLALLESCKSLK--QALQIHGQIVHSGLNHHISSSQLI-SFFALSGCKNGLFRSRILFS 66
           +L++++ +C +L   + L +  Q+   GL     +S +I +  A+ G    L  S++L  
Sbjct: 201 TLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLG 260

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
                ++  WNT++    +++   EAL     M+ +G V P+ FT   VL +C+ L   +
Sbjct: 261 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSHLEMLR 319

Query: 127 SGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           +G ++H + +K G L+ + F+ +AL+  Y     + +  +VF+G   R +  +N +I GY
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379

Query: 186 AQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +Q +    AL LF  M++S  +  ++ T   +  AC         +  H  V K      
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR----- 434

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                                        G+ +     ++++  Y+R GKI+ A ++F +
Sbjct: 435 -----------------------------GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL-----------GIHPDEVTMVAVLR 353
           M+ RDLV+W  MI+GY        AL L  KM++L            + P+ +T++ +L 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           +C  L AL  GK +H   I+N +   ++ + +A++DMYAKCG +  +  VF +IP+  K 
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ--KN 582

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  +N II     HG G+ +I + R M + G+KP+ VTF++V  ACSH G+V+EG + F 
Sbjct: 583 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 642

Query: 474 SM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAACRLHRN 531
            M  +YG++P  +HY C+VDLL R GR+ EAY L+  MP D N    W +LL A R+H N
Sbjct: 643 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 702

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            +IGEIA Q L+ LEP+  +HYVLL+N+ +    W++A +VR+ M + G++K PG S+IE
Sbjct: 703 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
           H   +H+F+A   SHPQ++++   L+ +  +++  GYVP+T  V+ +V+E+EKE ++  H
Sbjct: 763 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGH 822

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFG++N+     IR+ KNLR+C DCHLA K +S+I  REI++RD  RFH FK G
Sbjct: 823 SEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNG 882

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 883 TCSCGDYW 890



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 221/468 (47%), Gaps = 52/468 (11%)

Query: 71  PNIFI--------WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           P+IFI        W  L+R   RS+  +EA++ Y  M+  GI  P+N+ FP +L + A L
Sbjct: 52  PSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAFPALLKAVADL 110

Query: 123 SSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
              + G QIH H+ KFG   D + + N L++ Y   G     +KVF+    R+ VS+N+L
Sbjct: 111 QDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSL 170

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVYK 238
           I+     ++   AL  FR M D  ++P +FT V++ +AC+ L  P    +GKQ HA   +
Sbjct: 171 ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR 230

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                G    L + +IN                            ++++ Y + GK+  +
Sbjct: 231 K----GE---LNSFIIN----------------------------TLVAMYGKLGKLASS 255

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           + L      RDLV+W  ++S   Q     +ALE   +M   G+ PDE T+ +VL AC  L
Sbjct: 256 KVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
             L  GK LH   ++N     N F+ +A++DMY  C  + +   VF  +    + + L+N
Sbjct: 316 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD--RKIGLWN 373

Query: 419 SIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           ++I+G +Q+   + ++ +F  M E  GL  +  T   V+ AC   G     +     ++ 
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK 433

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            G+         ++D+ +R G++D A  +   M  D + V W  ++  
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITG 480



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W  ++    +     +A+  +  M  LGI PD     A+L+A   L  ++ GK++H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +      ++ +   ++++Y KCG       VF +I +    VS +NS+IS L      E 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER-NQVS-WNSLISSLCSFEKWEM 182

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHY--GC 489
           ++  FR M    ++P   T V+V+ ACS+  +  EG    + +  YG+ K ++  +    
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA-CRLHRNAKIGEIAGQKLLD-LEP 547
           +V +  + G+L  +  L+ S     + V W  +L++ C+  +  +  E   + +L+ +EP
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 548 DH 549
           D 
Sbjct: 301 DE 302


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/608 (39%), Positives = 361/608 (59%), Gaps = 10/608 (1%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L  CAR  S  +  ++H  IIK G +    + N L+  Y   G I  A ++F+    RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           VS+ +++  + +   P   L +   M     +QPD F F  +  AC+ L   R+GKQ HA
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
               +  C   + ++K+++I+MY KCG  + A  VF ++ + K++ +W+SMISGY R G+
Sbjct: 130 RFMLSXFC--DDEVVKSSLIDMYTKCGQPDEARAVFDSI-LFKNSVSWTSMISGYARSGR 186

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVAVLR 353
              A  LF Q   R+L SWTA+ISG  Q G    +  LF +M   GI   D + + +V+ 
Sbjct: 187 KCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVG 246

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
            C  L  L+ GK++H   I  + F   +F++ A++DMYAKC  I  A  +FY++P+  K 
Sbjct: 247 GCANLALLELGKQIHGLVIA-LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPR--KD 303

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + SII G AQHG  E ++ ++ EM L  +KP+ VTFV +L ACSH GLV  G++ F 
Sbjct: 304 VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFR 363

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM  +Y I P ++HY C++DLL+R G LDEA  L+  +P+  +   W +LL+AC  H N 
Sbjct: 364 SMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNL 423

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G     ++LDL+P+  + Y+LLSN+ A    W    +VRKLM    ++K PG+S I+ 
Sbjct: 424 EMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDF 483

Query: 593 NGTLHRFLASKK-SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
                 F A +   HP   EI  +LKD+  +++  GYVPNT  V++D++++EKE  + +H
Sbjct: 484 GKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWH 543

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+A+GL+ +     IRI KNLRICGDCH   K +S+I +REIMVRDA R+H FK+G
Sbjct: 544 SERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEG 603

Query: 712 NCSCMDFW 719
            CSC DFW
Sbjct: 604 KCSCNDFW 611



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/518 (22%), Positives = 225/518 (43%), Gaps = 89/518 (17%)

Query: 19  KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIW 76
           +S   A ++H QI+ +G +   + S+ L+  +     K GL    + LF ++ N +   W
Sbjct: 17  QSASAAGELHSQIIKAGFDKSSLLSNTLLDVYG----KCGLIPQALQLFDEMPNRDHVSW 72

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +++  ++++  P+  L +  +M +   + P++F F  ++ +C+ L   + G Q+H   +
Sbjct: 73  ASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFM 132

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL- 195
                 D  ++++LI  Y+  G  + A  VF+  L ++ VS+ ++I+GYA+    C A+ 
Sbjct: 133 LSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMD 192

Query: 196 ------------W------------------LFRKMQDSCIQ-PDAFTFVAMFSACTELN 224
                       W                  LF +M+   I   D     ++   C  L 
Sbjct: 193 LFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLA 252

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
              +GKQ H +V   LG   S + +  A+++MYAKC  +  A+ +F  M   K   +W+S
Sbjct: 253 LLELGKQIHGLVIA-LG-FESCLFISNALVDMYAKCSDILAAKDIFYRMP-RKDVISWTS 309

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I G  + GK E A  L+D+M          ++S                      I P+
Sbjct: 310 IIVGTAQHGKAEEALTLYDEM----------VLS---------------------RIKPN 338

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           EVT V +L AC   G +  G+ L +    +     ++   T ++D+ ++ G +D A ++ 
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLL 398

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFV---TVLCACS 460
            KIP      + + S++S   +H   E  + +     ++ LKP D  T++    V     
Sbjct: 399 DKIPFKPDEPT-WASLLSACMRHNNLEMGVRIAD--RVLDLKPEDPSTYILLSNVYAGAE 455

Query: 461 HGGLVEEGKQFFESM----------LNYGIKPQMEHYG 488
             G V + ++   SM          +++G   Q+ H G
Sbjct: 456 MWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAG 493



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 161/363 (44%), Gaps = 27/363 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SSL+ +   C    +A  +   I+     + +S + +IS +A SG K     +  LF Q 
Sbjct: 144 SSLIDMYTKCGQPDEARAVFDSIL---FKNSVSWTSMISGYARSGRK---CEAMDLFLQA 197

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F W  L+ G  +S     +  L+  M  +GI   +      V+  CA L+  + G
Sbjct: 198 PVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELG 257

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH  +I  G E  LFI NAL+  Y+    I  A  +F     +D++S+ ++I G AQ 
Sbjct: 258 KQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQH 317

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   AL L+ +M  S I+P+  TFV +  AC+       G++    +  +   +  ++ 
Sbjct: 318 GKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYS-INPSLQ 376

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM--- 305
             T ++++ ++ G ++ AE +   +        W+S++S   R   +E   ++ D++   
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL 436

Query: 306 ---DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
              D    +  + + +G    G  S+  +L   ME              +R   G  ++D
Sbjct: 437 KPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSME--------------VRKEPGYSSID 482

Query: 363 FGK 365
           FGK
Sbjct: 483 FGK 485


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/631 (38%), Positives = 384/631 (60%), Gaps = 13/631 (2%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           +  + LL++LE CKSL Q  QI  Q+V +GL  +  ++S+L++F ALS  K   + +RIL
Sbjct: 55  VRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRIL 114

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           + +I   N+F WN  +RGY  S   +   +LY  ML  G + P+N T+P +L  C    S
Sbjct: 115 Y-RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYS 173

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G  +  H++KFG E D+F+ NA I      G ++ A+ VF  S  RDLV++N++I G
Sbjct: 174 SCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
             +      A+ ++++M+   ++P+  T + M S+C+++ D  +GK+FH  + ++   + 
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEH--GLE 291

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
             + L  A+++MY KCG +  A  +F  M   K+  +W++M+ GY R G ++ AR++  +
Sbjct: 292 FTIPLTNALMDMYVKCGELLTARVLFDNMA-QKTLVSWTTMVLGYARFGFLDVAREILYK 350

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           + ++ +V W A+ISG  Q     +AL LF +M+   I PD+VTMV  L AC  LGALD G
Sbjct: 351 IPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVG 410

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             +H  YIE      ++ L TA++DMYAKCG+I  AL VF +IP+  +    + ++I GL
Sbjct: 411 IWIHH-YIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ--RNCLTWTAVICGL 467

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           A HG  + +++ F +M  +G+ PD +TF+ VL AC HGGLVEEG+++F  M + + + P+
Sbjct: 468 ALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPK 527

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           ++HY CMVDLL R G L+EA  L+++MP  A++ +  AL  ACR++ N +IGE    KLL
Sbjct: 528 LKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLL 587

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +++P    +YVLL++M +E   W+EAR  RKLM+D G++K PG S +E NG +H F+   
Sbjct: 588 EIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRD 647

Query: 604 KSHPQTKEIELMLKDMTMKL----KSAGYVP 630
            SHPQ++ I   L  +T +L    +  GY P
Sbjct: 648 VSHPQSEWIYECLVTLTKQLDVIVRKHGYFP 678


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/625 (40%), Positives = 362/625 (57%), Gaps = 40/625 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH  I    L  +  +   LI        ++ A  +F      +L  +N LI G A+  
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV------------- 236
               ++  F  M    I+PD  T   +  +   L D  +G+  H  V             
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 237 -----YKNLGCVG---------------SNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
                Y  +G +G                ++LL   +IN   K G ++ A  +F  M   
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMP-E 236

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           ++  +W+S+I+G+ R G ++RAR+LF QM ++++VSWT MI+G+SQ G   +AL +F +M
Sbjct: 237 RNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRM 296

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ P+++T+V+ L AC  +GAL  G+R+H  Y+ +  F  N  + TA++DMYAKCG+
Sbjct: 297 LEEGVRPNDLTVVSALLACTKIGALQVGERIHN-YLSSNGFQLNRGIGTALVDMYAKCGN 355

Query: 397 IDTALSVFYKIP-KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
           I +A  VF +   K+L T S+   +I G A HG  + ++  F +M+  G+ PD V F+ +
Sbjct: 356 IKSASRVFVETKGKDLLTWSV---MIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI 412

Query: 456 LCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACSH G V++G  FFESM L+Y I+P M+HY  +VDLL R GRLDEA   IQSMP + 
Sbjct: 413 LTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINP 472

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           + VIW AL  ACR H+N ++ E+  +KLL LEP H   YV LSN+ A   RWE+  +VR 
Sbjct: 473 DFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRT 532

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           LM + G++K PGWSYIE  G +H F+A   +H + +EI L L+++T   K  GY+P T  
Sbjct: 533 LMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAW 592

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+ +++EEEKE  +  HSEKLALAFGLI++    TIRI KNLR+CGDCH   K  S++ R
Sbjct: 593 VLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSR 652

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REI++RD  RFH FK G CSC D+W
Sbjct: 653 REIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 201/470 (42%), Gaps = 107/470 (22%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCK-NGLFRSRILFSQ 67
           +  + L+ +  +L Q  QIH QI    L++  S+S++++    S C    L  +  +F  
Sbjct: 41  THFIPLIHASNTLPQLHQIHAQIF---LHNLFSNSRVVTQLISSSCSLKSLDYALSIFRC 97

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D+PN+F++N L+RG + +   + ++  +  ML   I  P+  T PFVL S A L     
Sbjct: 98  FDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSI-RPDRLTLPFVLKSVAALVDVGL 156

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFY-----------------------SIF------- 157
           G  +H  ++K GLEFD F+R +L+  Y                       SI        
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLIN 216

Query: 158 -----GYINNAHKVFEGSLARDLVSYNTLING-------------YAQVKEPCPALW--- 196
                G ++ A  +FE    R+  S+N+LING             + Q+ E     W   
Sbjct: 217 GCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTM 276

Query: 197 ---------------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
                          +F +M +  ++P+  T V+   ACT++   ++G++ H  +  N  
Sbjct: 277 INGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSN-- 334

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVF-STMGMSKSTAAWSSMISGYTREGKIERARQ 300
               N  + TA+++MYAKCG +  A RVF  T G  K    WS MI G+           
Sbjct: 335 GFQLNRGIGTALVDMYAKCGNIKSASRVFVETKG--KDLLTWSVMIWGWAIH-------- 384

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                  G F QAL+ F KM+S GI+PDEV  +A+L AC   G 
Sbjct: 385 -----------------------GCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGN 421

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +D G    +    +      +   T ++D+  + G +D ALS    +P N
Sbjct: 422 VDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPIN 471


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/773 (33%), Positives = 422/773 (54%), Gaps = 88/773 (11%)

Query: 24  ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
            ++IHG ++  G +  +     L++F+   G   GL ++  +F ++ NP   +WN  +  
Sbjct: 152 GMEIHGCLIKRGFDLDVYLRCALMNFY---GRCWGLEKANQVFHEMPNPEALLWNEAIIL 208

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
             +S+  Q+ + L+  M     +     T   VL +C ++ +  +  QIH ++ +FGL+ 
Sbjct: 209 NLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDS 267

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+ + N LI  YS  G +  A +VF+    R+  S+N++I+ YA +     A  LF +++
Sbjct: 268 DVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELE 327

Query: 203 DSCIQPDAFTFVAMFS-----------------------------------ACTELNDPR 227
            S ++PD  T+  + S                                   A +EL    
Sbjct: 328 SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLN 387

Query: 228 IGKQFHAVVYKN-LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           +GK+ H  V +N   C   ++ + T++I+MY K   +  A+ VF  M  +++  AW+S++
Sbjct: 388 MGKETHGYVLRNGFDC---DVYVGTSLIDMYVKNHSLTSAQAVFDNMK-NRNIFAWNSLV 443

Query: 287 SGYTREGKIERARQLFDQMDQR-------------------------------------- 308
           SGY+ +G  E A +L +QM++                                       
Sbjct: 444 SGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLT 503

Query: 309 -DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            ++VSWTA+ISG SQ G    +L+ F +M+  G+ P+  ++  +LRAC  L  L  GK +
Sbjct: 504 PNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEI 563

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   I N  F  ++F+ TA+IDMY+K  S+  A  VF +I    KT++ +N +I G A  
Sbjct: 564 HCLSIRNG-FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN--KTLASWNCMIMGFAIF 620

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           GLG+ +I+VF EM+ +G+ PD +TF  +L AC + GL+ EG ++F+SM+ +Y I P++EH
Sbjct: 621 GLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEH 680

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMVDLL R G LDEA+ LI +MP   ++ IW ALL +CR+H+N K  E A + L  LE
Sbjct: 681 YCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLE 740

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P++ A+Y+L+ N+ +   RWE+   +R+LM  +G++    WS+I+ N  +H F + +K H
Sbjct: 741 PNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPH 800

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P   +I   L  +  ++K  GYVP+   V  ++DE EK+ ++  H+EKLA+ +GLI  ++
Sbjct: 801 PDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKA 860

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            E IR+ KN RIC DCH A K +S +  RE+ +RD +RFH F++G CSC DFW
Sbjct: 861 GEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 21  LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGC-KNGLFRSRILFSQIDNPNIFIWNT 78
            + AL++  Q+   G+    ++ + +IS +A+ GC K  L       S    PN+  W  
Sbjct: 452 FEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTA 511

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L+ G S++ + +++L  +  M  +G++ PN+ +   +L +CA LS  + G +IHC  I+ 
Sbjct: 512 LISGSSQAGNNRDSLKFFAQMQQEGVM-PNSASITCLLRACASLSLLQKGKEIHCLSIRN 570

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G   D+F+  ALI  YS    + NAHKVF     + L S+N +I G+A       A+ +F
Sbjct: 571 GFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVF 630

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIG---KQFHAVV--YKNLGCVGSNMLLKTAV 253
            +MQ   + PDA TF A+ SAC   N   IG   K F +++  Y+    +   +     +
Sbjct: 631 NEMQKVGVGPDAITFTALLSACK--NSGLIGEGWKYFDSMITDYR----IVPRLEHYCCM 684

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           +++  + G ++ A  +  TM +      W +++
Sbjct: 685 VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 717



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 18/311 (5%)

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY-SQVGGFSQALELFGKMES 338
           AA  ++IS Y   G    A  +F     R+ + W + +  + S  G     LE+F ++  
Sbjct: 67  AAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHG 126

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+  D       L+ C  +  +  G  +H   I+   F  +++L  A+++ Y +C  ++
Sbjct: 127 KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKR-GFDLDVYLRCALMNFYGRCWGLE 185

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF+++P N + +    +II  L    L +  + +FR+M+   LK +  T V VL A
Sbjct: 186 KANQVFHEMP-NPEALLWNEAIILNLQSEKL-QKGVELFRKMQFSFLKAETATIVRVLQA 243

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           C   G +   KQ    +  +G+   +     ++ + +++G+L+ A  +  SM  + N+  
Sbjct: 244 CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSME-NRNTSS 302

Query: 519 WRALLAACRLHRNAKIGEIAGQKLL-------DLEPDHGAHYVLLSNMLAETYRWEEARQ 571
           W +++++      A +G +     L       D++PD      LLS      Y+ EE   
Sbjct: 303 WNSMISSY-----AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK-EEVLN 356

Query: 572 VRKLMDDSGIQ 582
           + + M   G +
Sbjct: 357 ILQRMQGEGFK 367


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/623 (41%), Positives = 375/623 (60%), Gaps = 22/623 (3%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P++ TF  +L     L+  K   QIH  ++  GL  +  +   LIH Y     ++ A  V
Sbjct: 53  PSHSTFVQLLKKRPSLTQIK---QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 167 FE--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTE 222
           F+   SL   ++ +N +I  Y++      +L+LF +M         D +TF  +F+AC+ 
Sbjct: 110 FDQFPSLPPTII-WNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSR 168

Query: 223 LNDPR-IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
               R  G+  H +V K+     S++ +  +++NMY+    M  A+RVF  M   +    
Sbjct: 169 HPTLRGYGENVHGMVVKD--GYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP-QRDVIT 225

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG- 340
           W+S++ GY   G++ RAR+LFD M  R+ VSW  M++GY     +++AL+ F  M     
Sbjct: 226 WTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDE 285

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN-VVFGRNIFLTTAVIDMYAKCGSIDT 399
           + P+E  +V++L AC  LGALD GK +H    +N ++   NI  +TA+IDMYAKCG ID 
Sbjct: 286 VKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNI--STALIDMYAKCGRIDC 343

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A  VF  + K  + +  + S+ISGL+ HGLG   +  F EM   G KPD +T + VL  C
Sbjct: 344 ARRVFDGLHK--RDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGC 401

Query: 460 SHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLVEEG   F  M+  +GI P++EHYGC++DLL R GRL+ A+  I+SMP + + V 
Sbjct: 402 SHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVA 461

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           WRALL+ACR+H +  +GE     + +L P  HG  YVLLSN+ A   +WE   +VRK M 
Sbjct: 462 WRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMS 521

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVV 636
             G +  PG S+IE +G +H FLA+ K HP+  EI   L ++  ++    GYVP+T QV+
Sbjct: 522 QRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVL 581

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
           FD++EE+KE  VS+HSEKLA+AFGL++++ + TIRITKNLR C DCH A K +S ++ RE
Sbjct: 582 FDLNEEDKEQAVSWHSEKLAVAFGLLSTQ-EGTIRITKNLRTCEDCHSAMKTISLVFNRE 640

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD  RFH F+ GNCSC D+W
Sbjct: 641 IVVRDRSRFHTFRYGNCSCTDYW 663



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 224/495 (45%), Gaps = 93/495 (18%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFS 66
           HS+ + LL+   SL Q  QIH Q+V  GL  + S    LI  +   GC+N  F +RI+F 
Sbjct: 55  HSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYI--GCRNLSF-ARIVFD 111

Query: 67  QIDN-PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSS 124
           Q  + P   IWN +++ YS++ S QE+L L+  ML+ G   S + +TF FV  +C+R  +
Sbjct: 112 QFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPT 171

Query: 125 FKS-GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            +  G  +H  ++K G E D+F+ N+L++ YSIF  + +A +VF+    RD++++ +++ 
Sbjct: 172 LRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVK 231

Query: 184 GYAQVKEPCPALWLFRKMQD-----------------------SC---------IQPDAF 211
           GYA   E   A  LF  M                          C         ++P+  
Sbjct: 232 GYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEA 291

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
             V++ SAC  L     GK  H  + KN   + SN  + TA+I+MYAKCG ++ A RVF 
Sbjct: 292 VLVSILSACAHLGALDQGKWIHVYIDKNRILLSSN--ISTALIDMYAKCGRIDCARRVFD 349

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
            +   +    W+SMISG +  G                             +G  ++ L 
Sbjct: 350 GL-HKRDLLTWTSMISGLSMHG-----------------------------LG--AECLW 377

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
            F +M + G  PD++T++ VL  C   G ++ G  +    I        +     +ID+ 
Sbjct: 378 TFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLL 437

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREMELMGLKPD 448
            + G +++A      +P     V+ + +++S    HG   LGE  I              
Sbjct: 438 GRAGRLESAFEAIKSMPMEPDVVA-WRALLSACRIHGDVDLGERII-------------- 482

Query: 449 GVTFVTVLCACSHGG 463
               +  LC  SHGG
Sbjct: 483 --NHIAELCPGSHGG 495


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/645 (36%), Positives = 377/645 (58%), Gaps = 44/645 (6%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WN L+  +SR+ +P  AL ++ ++ S     PN+ TF   L +CARL    +   +    
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSA--RPNSTTFTLTLTACARLGDLDAAESVRVRA 133

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
              G   D+F+ +AL+H YS  G +  A +VF+G   +D V+++T++ G+     P  AL
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            ++ +M++  +  D    V +  AC    + RIG   H  + ++  C+  +++  T++++
Sbjct: 194 AMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRH--CMRMDVVTTTSLVS 251

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MYAK                                 G ++ A Q+F  M  R+ V+W+A
Sbjct: 252 MYAK--------------------------------NGHLDVACQVFRMMPYRNDVTWSA 279

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           +ISG++Q G   +AL+LF ++++ G+ P    +V+ L AC  +G L  GK +H   +  +
Sbjct: 280 LISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRL 339

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            +     L TAV+DMY+KCGS+++A  +F K+    + + L+N+II+    HG G  ++A
Sbjct: 340 EW--QCILGTAVLDMYSKCGSLESARKLFNKLSS--RDLVLWNAIIACCGTHGCGHDALA 395

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLL 494
           +F+E+   G+KPD  TF ++L A SH GLVEEGK +F+ M+  +GI+P  +HY C+VDLL
Sbjct: 396 LFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLL 455

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
           AR G ++EA  ++ SM  +    IW  LL+ C  ++  ++GE   +K+L+L P+      
Sbjct: 456 ARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLA 515

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           L+SN+ A   +W++ R++RKLM DSG +K PG+S IE  GT H F+   +SHPQ +EI  
Sbjct: 516 LVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILK 575

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
           M+  +  +++  GYVP T  V  D+DE++   ++SYHSE+LA+AFGL+N+     + I K
Sbjct: 576 MVAKLNSEMRKLGYVPRTEFVYHDLDEDQ---LLSYHSERLAIAFGLLNTSPGTRLVIIK 632

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+CGDCH A K +S+I  REI+VRDA RFH FK G CSC D+W
Sbjct: 633 NLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 143/291 (49%), Gaps = 12/291 (4%)

Query: 11  LLALLESCKSLKQA---LQIHGQIV-HSGLNHHISSSQLISFFALSGCKNG-LFRSRILF 65
           ++ ++++C S   A     +HG+++ H      ++++ L+S +A    KNG L  +  +F
Sbjct: 211 MVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYA----KNGHLDVACQVF 266

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   N   W+ L+ G++++    EAL L+  + + G+  P ++     L +CA +   
Sbjct: 267 RMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGL-QPCSWALVSALLACASVGFL 325

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           K G  IH  I++  LE+   +  A++  YS  G + +A K+F    +RDLV +N +I   
Sbjct: 326 KLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACC 384

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   AL LF+++ ++ I+PD  TF ++ SA +       GK +   + K  G   +
Sbjct: 385 GTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPA 444

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
                  ++++ A+ GL+  A  + ++M    + A W  ++SG     K+E
Sbjct: 445 EKHY-VCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLE 494


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/657 (37%), Positives = 388/657 (59%), Gaps = 17/657 (2%)

Query: 64   LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
             F  +   N + W T++  +++     +A+ LY  +  + +      T   ++ + A++ 
Sbjct: 418  FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA-----TKTAMMTAYAQVG 472

Query: 124  SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
              +    I   I    L  ++   NA+I  Y+  G +  A  +F+    ++  S+  +I 
Sbjct: 473  RIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIA 528

Query: 184  GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            G+ Q +E   AL L  ++  S   P   +F +  SAC  + D  IG+  H++  K  GC 
Sbjct: 529  GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKT-GC- 586

Query: 244  GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
              N  +   +I+MYAKCG +     VF T+ + K T +W+S+ISG +    ++ AR +F+
Sbjct: 587  QFNSYVMNGLISMYAKCGNVEDGSHVFRTIRV-KDTVSWNSLISGLSENYMLDDARVVFE 645

Query: 304  QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            +M +RD+VSWTA+IS Y Q G    AL+LF  M + GI P+++T+ ++L AC  LGA+  
Sbjct: 646  KMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKL 705

Query: 364  GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            G++ H   I  + F   +F+  ++I MY KCG  D    VF ++P++   +  +N+++ G
Sbjct: 706  GEQFHA-LIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEH--DLITWNAVLVG 761

Query: 424  LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
             AQ+GLG+ +I +F +ME+ G+ PD ++F+ VLCACSH GLV+EG   F SM   YGI P
Sbjct: 762  CAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMP 821

Query: 483  QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
             + HY CMVDLL R G L EA  LI++MP   +SVIW ALL ACR+HRN ++G+   ++L
Sbjct: 822  LVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERL 881

Query: 543  LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
              +     A YVLLSN+ A    W++  ++RKLM D G+ K PG S+I+    LH F+  
Sbjct: 882  FQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTG 941

Query: 603  KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
             ++H Q +EI   LK+     ++ GY+P+T  V+ DV+EE+K+  + YHSEKLA+ FG++
Sbjct: 942  DRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGIL 1001

Query: 663  NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            ++ +   I+I KNLRICGDCH   K +S++  R+I++RD  RFH F+ G+CSC D+W
Sbjct: 1002 STPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 132/559 (23%), Positives = 249/559 (44%), Gaps = 110/559 (19%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R+LF      NI  W  L+ GY++    +EA  ++ SM  + +VS N     +V N   
Sbjct: 221 ARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQN--- 277

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                K+  ++   +     E ++   N+++  Y     ++ A ++F+    R+ VS+  
Sbjct: 278 --GDLKNARKLFDEMP----EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMV 331

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY  + +   A  +F KM  +  +PD   FV + SA T L+D  +      +  K  
Sbjct: 332 MISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKT- 390

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI-------------- 286
           G  G ++++ +A++N Y + G +++A   F TM   ++  +W++MI              
Sbjct: 391 GYEG-DVVVGSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQ 448

Query: 287 -----------------SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                            + Y + G+I++AR +FD++   ++V+W A+I+GY+Q G   +A
Sbjct: 449 LYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEA 508

Query: 330 LELFGKM----------------------ESL---------GIHPDEVTMVAVLRACVGL 358
            +LF KM                      E+L         G  P + +  + L AC  +
Sbjct: 509 KDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANI 568

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI--------------------- 397
           G ++ G+ +H   I+      N ++   +I MYAKCG++                     
Sbjct: 569 GDVEIGRVIHSLAIKTGC-QFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSL 627

Query: 398 ----------DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
                     D A  VF K+PK  + V  + +IIS   Q G GE ++ +F +M   G+KP
Sbjct: 628 ISGLSENYMLDDARVVFEKMPK--RDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKP 685

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           + +T  ++L AC + G ++ G+QF   +   G    +     ++ +  + G  ++ + + 
Sbjct: 686 NQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVF 744

Query: 508 QSMPYDANSVIWRALLAAC 526
           + MP + + + W A+L  C
Sbjct: 745 EEMP-EHDLITWNAVLVGC 762



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 194/382 (50%), Gaps = 23/382 (6%)

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
           LF  N  I      G +  A +VF   + RD+VS+N++INGY+Q  +   A  LF    D
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----D 226

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           + +  +  T+  + +   +  + RI +     V++++     N++   A+I+ Y + G +
Sbjct: 227 AFVGKNIRTWTILLTGYAK--EGRIEEARE--VFESM--TERNVVSWNAMISGYVQNGDL 280

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
             A ++F  M   K+ A+W+S+++GY    ++  AR+LFDQM +R+ VSW  MISGY  +
Sbjct: 281 KNARKLFDEMP-EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHI 339

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
             + +A ++F KM      PD+   V VL A  GL  L+    L    I+    G ++ +
Sbjct: 340 SDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEG-DVVV 398

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
            +A+++ Y + GS+D A+  F  +P+  +    + ++I+  AQ G  + +I ++  +   
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETMPE--RNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ 456

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
            +     T   ++ A +  G +++ +  F+ +LN    P +  +  ++    ++G L EA
Sbjct: 457 TV----ATKTAMMTAYAQVGRIQKARLIFDEILN----PNVVAWNAIIAGYTQNGMLKEA 508

Query: 504 YGLIQSMPYDANSVIWRALLAA 525
             L Q MP   NS  W A++A 
Sbjct: 509 KDLFQKMPV-KNSASWAAMIAG 529


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/728 (34%), Positives = 410/728 (56%), Gaps = 56/728 (7%)

Query: 10  SLLALLESCKSLK--QALQIHGQIVHSGLNHHISSSQLI-SFFALSGCKNGLFRSRILFS 66
           +L++++ +C +L   + L +  Q+   GL     +S +I +  A+ G    L  S++L  
Sbjct: 201 TLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLG 260

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
                ++  WNT++    +++   EAL     M+ +G V P+ FT   VL +C+ L   +
Sbjct: 261 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSHLEMLR 319

Query: 127 SGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           +G ++H + +K G L+ + F+ +AL+  Y     + +  +VF+G   R +  +N +I GY
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379

Query: 186 AQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +Q +    AL LF  M++S  +  ++ T   +  AC         +  H  V K      
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR----- 434

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                                        G+ +     ++++  Y+R GKI+ A ++F +
Sbjct: 435 -----------------------------GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL-----------GIHPDEVTMVAVLR 353
           M+ RDLV+W  MI+GY        AL L  KM++L            + P+ +T++ +L 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           +C  L AL  GK +H   I+N +   ++ + +A++DMYAKCG +  +  VF +IP+  K 
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ--KN 582

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  +N II     HG G+ +I + R M + G+KP+ VTF++V  ACSH G+V+EG + F 
Sbjct: 583 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 642

Query: 474 SM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAACRLHRN 531
            M  +YG++P  +HY C+VDLL R GR+ EAY L+  MP D N    W +LL A R+H N
Sbjct: 643 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 702

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            +IGEIA Q L+ LEP+  +HYVLL+N+ +    W++A +VR+ M + G++K PG S+IE
Sbjct: 703 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
           H   +H+F+A   SHPQ++++   L+ +  +++  GYVP+T  V+ +V+E+EKE ++  H
Sbjct: 763 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGH 822

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFG++N+     IR+ KNLR+C DCHLA K +S+I  REI++RD  RFH FK G
Sbjct: 823 SEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNG 882

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 883 TCSCGDYW 890



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 221/468 (47%), Gaps = 52/468 (11%)

Query: 71  PNIFI--------WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           P+IFI        W  L+R   RS+  +EA++ Y  M+  GI  P+N+ FP +L + A L
Sbjct: 52  PSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAFPALLKAVADL 110

Query: 123 SSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
              + G QIH H+ KFG   D + + N L++ Y   G     +KVF+    R+ VS+N+L
Sbjct: 111 QDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSL 170

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVYK 238
           I+     ++   AL  FR M D  ++P +FT V++ +AC+ L  P    +GKQ HA   +
Sbjct: 171 ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR 230

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                G    L + +IN                            ++++ Y + GK+  +
Sbjct: 231 K----GE---LNSFIIN----------------------------TLVAMYGKLGKLASS 255

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           + L      RDLV+W  ++S   Q     +ALE   +M   G+ PDE T+ +VL AC  L
Sbjct: 256 KVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHL 315

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
             L  GK LH   ++N     N F+ +A++DMY  C  + +   VF  +    + + L+N
Sbjct: 316 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD--RKIGLWN 373

Query: 419 SIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           ++I+G +Q+   + ++ +F  M E  GL  +  T   V+ AC   G     +     ++ 
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK 433

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            G+         ++D+ +R G++D A  +   M  D + V W  ++  
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITG 480



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W  ++    +     +A+  +  M  LGI PD     A+L+A   L  ++ GK++H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +      ++ +   ++++Y KCG       VF +I +    VS +NS+IS L      E 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER-NQVS-WNSLISSLCSFEKWEM 182

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHY--GC 489
           ++  FR M    ++P   T V+V+ ACS+  +  EG    + +  YG+ K ++  +    
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA-CRLHRNAKIGEIAGQKLLD-LEP 547
           +V +  + G+L  +  L+ S     + V W  +L++ C+  +  +  E   + +L+ +EP
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 548 DH 549
           D 
Sbjct: 301 DE 302


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/610 (39%), Positives = 356/610 (58%), Gaps = 44/610 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK-VFEGSLAR 173
           +L +C  L       Q+H HIIK G + +  +        S    I  A   VF    AR
Sbjct: 13  ILQACNTLPKL---AQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR 69

Query: 174 --DLVSYNTLINGYAQVKEPC-PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             D   ++T+I  YA+  +    A++ +  M    I P+ + F  +  AC  L D  +GK
Sbjct: 70  VYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGK 129

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
             H  + K  G    ++ ++  +++MY  C                              
Sbjct: 130 AVHGSLVK-FG-FDDDIFVQNTMVHMYCCCS----------------------------- 158

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             G +E AR+LFD+M + D V+WTAMI GY+++G  + A+ LF KM+  G+ PD+VTMV+
Sbjct: 159 --GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVS 216

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC  LGAL+ GK + + YIE     + + L+ A++DM+AKCG +D AL +F  + K 
Sbjct: 217 VLSACTDLGALELGKWI-ESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSK- 274

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            +T+  + S+I GLA HG G  ++++F EM+  G+ P+ + F+ +L ACSH GLVE G+Q
Sbjct: 275 -RTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQ 333

Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F  M   +GI P++EHYGCMVDLL+R G + EA   ++ MP + N +IWR L++ACR+H
Sbjct: 334 YFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVH 393

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
              K+GE   ++L+  EP H ++YVLLSN+  +   WE+  ++R  M   GIQK PG + 
Sbjct: 394 GELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTM 453

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           IE +  +H F+   +SH Q  EI  M+ +M  ++K AGY P T +V  D+DEE+KE  +S
Sbjct: 454 IELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALS 513

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSEKLA+AF L+N+     IRITKNLR+CGDCH A K +S+IY REI++RD  RFH F+
Sbjct: 514 RHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFR 573

Query: 710 KGNCSCMDFW 719
            G CSC DFW
Sbjct: 574 DGQCSCGDFW 583



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 212/429 (49%), Gaps = 46/429 (10%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           L +L++C +L +  Q+H  I+  G  ++     L  F + S   + +  +  L   +++ 
Sbjct: 11  LDILQACNTLPKLAQLHTHIIKLGFQNN--PLVLTKFTSASSNLDAIPYAMSLVFSVEDA 68

Query: 72  NI---FIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            +   F+++T++R Y+ S  S   A+  Y  ML  GI SPN + FPFVL +CA L     
Sbjct: 69  RVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGI-SPNKYAFPFVLKACAGLRDLNL 127

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIF-GYINNAHKVFEGSLARDLVSYNTLINGYA 186
           G  +H  ++KFG + D+F++N ++H Y    G +  A K+F+     D V++  +I GYA
Sbjct: 128 GKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYA 187

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           ++ +   A+ LFRKMQ + + PD  T V++ SACT+L    +GK   + + K    V   
Sbjct: 188 RLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKER--VLKT 245

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + L  A+++M+AKCG ++ A  +F  M   ++  +W+S+I G    G+            
Sbjct: 246 VELSNALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMHGR------------ 292

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                             G  +A+ LF +M++ G+ P+++  + +L AC   G ++ G++
Sbjct: 293 ------------------GL-EAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQ 333

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
              +          I     ++D+ ++ G +  AL    ++P     + ++ ++IS    
Sbjct: 334 YFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPI-IWRTLISACRV 392

Query: 427 HG---LGET 432
           HG   LGE+
Sbjct: 393 HGELKLGES 401


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/713 (36%), Positives = 400/713 (56%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S++L LL S +  K    +H  +   G +      + LI  +++ G       +R +F  
Sbjct: 149 STVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAEC---ARQVFDA 205

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I+  ++  W  ++  Y  ++  +E+L L++ M   G   PNNFTF  VL +C  L  F  
Sbjct: 206 IEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGF-KPNNFTFASVLKACVGLEVFNV 264

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H    K     +LF+   LI  Y   G +++A +VFE     D++ ++ +I  YAQ
Sbjct: 265 GKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQ 324

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            ++   A+ +F +M+   + P+ FT  ++  AC  L D ++G Q H  V K +G +  N+
Sbjct: 325 SEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK-VG-LDMNV 382

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+++MYAKCG                                ++E + QLF +   
Sbjct: 383 FVSNALMDMYAKCG--------------------------------RMENSLQLFSESPN 410

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
              VSW  +I GY Q G   +AL LF  M    +   EVT  +VLRAC G+ AL+ G ++
Sbjct: 411 CTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQI 470

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   ++ + + +N  +  A+IDMYAKCG+I  A  VF  + +    VS +N++ISG + H
Sbjct: 471 HSLSVKTI-YDKNTVVGNALIDMYAKCGNIKDARLVF-DMLREHDQVS-WNAMISGYSVH 527

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           GL   ++  F  M     KPD VTFV +L ACS+ GL++ G+ +F+SM+  Y I+P  EH
Sbjct: 528 GLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEH 587

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMV LL R G LD+A  L+  +P++ + ++WRALL+AC +H + ++G I+ Q++L++E
Sbjct: 588 YTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIE 647

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+  A +VLLSN+ A   RW     +R  M   GI+K PG S+IE+ G +H F     SH
Sbjct: 648 PEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSH 707

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P TK I  ML+ + MK ++ GYVP+   V+ DV++ +KE  +  HSE+LALA+GLI + S
Sbjct: 708 PDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPS 767

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +RI KNLRIC DCH A KL+S+I +R+I++RD  RFH F +G CSC D+W
Sbjct: 768 ISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 196/423 (46%), Gaps = 48/423 (11%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N + +  +L SC R     +G  +HC IIK G   DLF  N L++FY  +  + +A K+F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +    R+ VS+ TLI GY+Q      A+ LF ++Q    + + F F  +          +
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           +G   HA VYK LG   S+  + TA+I+ Y+ CG    A +VF  +   K   +W+ M++
Sbjct: 163 LGFSVHACVYK-LG-FDSDAFVGTALIDCYSVCGYAECARQVFDAIEY-KDMVSWTGMVA 219

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y                                    F ++L+LF +M  +G  P+  T
Sbjct: 220 CYVEN-------------------------------ECFEESLKLFSRMRIVGFKPNNFT 248

Query: 348 MVAVLRACVGLGALDFGKRLH-----QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
             +VL+ACVGL   + GK +H       Y+E       +F+   +ID+Y K G +D AL 
Sbjct: 249 FASVLKACVGLEVFNVGKAVHGCAFKTSYLE------ELFVGVELIDLYIKSGDVDDALQ 302

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF ++PK+   V  ++ +I+  AQ    E +I +F  M    + P+  T  ++L AC+  
Sbjct: 303 VFEEMPKD--DVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASL 360

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
             ++ G Q    ++  G+   +     ++D+ A+ GR++ +  L    P +   V W  +
Sbjct: 361 VDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP-NCTDVSWNTV 419

Query: 523 LAA 525
           +  
Sbjct: 420 IVG 422


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/550 (40%), Positives = 358/550 (65%), Gaps = 12/550 (2%)

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           ++ S+N++I   A+  +   AL  F  M+   ++P+  TF     +C+ L D   G+Q H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 234 --AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
             A+++        ++ + +A+++MY+KCG +  A  +F  +   ++  +W+SMI+GY +
Sbjct: 100 QQALIFG----FEPDLFVSSALVDMYSKCGELRDARTLFDEIS-HRNIVSWTSMITGYVQ 154

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVA 350
                RA ++FD M +RD++SW ++I+ Y+Q G  ++++E+F +M   G I+ + VT+ A
Sbjct: 155 NDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSA 214

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC   G+   GK +H Q I+ +    N+F+ T++IDMY KCG ++ A   F ++ + 
Sbjct: 215 VLLACAHSGSQRLGKCIHDQVIK-MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE- 272

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K V  ++++++G   HG  + ++ VF EM + G+KP+ +TFV+VL ACSH GL+EEG  
Sbjct: 273 -KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F++M + + ++P +EHYGCMVDLL R G L EA+ LI+ M    + V+W ALL ACR+H
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           +N  +GEI+ +KL +L+P +  +YVLLSN+ A+  RWE+  ++R LM +SG+ KPPG+S 
Sbjct: 392 KNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSL 451

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           ++  G +H FL   + HPQ ++I   L+ ++MKL+  GYVP+   V+ DV  EEKE V+ 
Sbjct: 452 VDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLR 511

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSEKLA+AFG++N+    TI I KNLR+CGDCH A K +S+I  REI+VRD+ RFH F+
Sbjct: 512 VHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFR 571

Query: 710 KGNCSCMDFW 719
            G CSC D+W
Sbjct: 572 DGLCSCGDYW 581



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 162/334 (48%), Gaps = 68/334 (20%)

Query: 64  LFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           LF++ +D  N+F WN+++   +RS    EAL  ++SM  K  + PN  TFP  + SC+ L
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSM-RKLSLKPNRSTFPCAIKSCSAL 89

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS--------------------------I 156
               SG Q H   + FG E DLF+ +AL+  YS                          I
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 157 FGYINN--AH---KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDA 210
            GY+ N  AH   +VF+G   RD++S+N++I  YAQ      ++ +F +M +D  I  +A
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T  A+  AC      R+GK  H  V K +G + SN+ + T++I+MY KCG + MA + F
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIK-MG-LESNVFVGTSIIDMYCKCGKVEMARKAF 267

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             M   K+  +WS+M++GY   G  +                               +AL
Sbjct: 268 DRM-REKNVKSWSAMVAGYGMHGHAK-------------------------------EAL 295

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           E+F +M   G+ P+ +T V+VL AC   G L+ G
Sbjct: 296 EVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 37/266 (13%)

Query: 301 LFDQ-MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           LF++ +D+ ++ SW ++I+  ++ G   +AL  F  M  L + P+  T    +++C  L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 360 ALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL----- 411
            L  G++ HQQ +   +FG   ++F+++A++DMY+KCG +  A ++F +I  +N+     
Sbjct: 91  DLHSGRQAHQQAL---IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTS 147

Query: 412 -----------------------KTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKP 447
                                  + V  +NSII+  AQ+G+   S+ +F  M   G +  
Sbjct: 148 MITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY 207

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           + VT   VL AC+H G    GK   + ++  G++  +     ++D+  + G+++ A    
Sbjct: 208 NAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAF 267

Query: 508 QSMPYDANSVIWRALLAACRLHRNAK 533
             M  + N   W A++A   +H +AK
Sbjct: 268 DRMR-EKNVKSWSAMVAGYGMHGHAK 292



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 169/369 (45%), Gaps = 18/369 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L+ +   C  L+ A  +  +I H  +   +S + +I+ +  +   +   R+  +F  +
Sbjct: 115 SALVDMYSKCGELRDARTLFDEISHRNI---VSWTSMITGYVQN---DDAHRALRVFDGM 168

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++  WN+++  Y+++    E++ ++  M+  G ++ N  T   VL +CA   S + G
Sbjct: 169 AERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG 228

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH  +IK GLE ++F+  ++I  Y   G +  A K F+    +++ S++ ++ GY   
Sbjct: 229 KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMH 288

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL +F +M  + ++P+  TFV++ +AC+       G  +   +      V   + 
Sbjct: 289 GHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD-VEPGVE 347

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQ 304
               ++++  + G +  A  +   M +      W +++        ++     AR+LF +
Sbjct: 348 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLF-E 406

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVL-RACVGLGALD 362
           +D ++   +  + + Y+  G +     +   M++ G + P   ++V +  R  V L    
Sbjct: 407 LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFL---- 462

Query: 363 FGKRLHQQY 371
            G R H Q+
Sbjct: 463 VGDREHPQH 471


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/604 (40%), Positives = 367/604 (60%), Gaps = 47/604 (7%)

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG 169
            T+PFV+ +C   S    G  +H H++K G E D +I N+LIH Y+    +  A ++F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
              RD+VS+N +I+GY +  E      +F +M                            
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM---------------------------- 92

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
                        V  +++    +IN YA  G ++ A+R+F  M   ++  +W+SM+SG+
Sbjct: 93  -------------VCRDVISWNTIINGYAIVGKIDEAKRLFDEMP-ERNLVSWNSMLSGF 138

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            + G +E A  LF +M  RD+VSW +M++ Y+Q G  ++AL LF +M ++G+ P E T+V
Sbjct: 139 VKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV 198

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++L AC  LGALD G  LH  YI +     N  + TA++DMYAKCG I  A  VF  +  
Sbjct: 199 SLLSACAHLGALDKGLHLHT-YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 257

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K V  +N+II+G+A HG  + +  +F+EM+   ++P+ +TFV +L ACSH G+V+EG+
Sbjct: 258 --KDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQ 315

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           +  + M + YGI+P++EHY C++DLLAR G L+EA  LI +MP + N     ALL  CR+
Sbjct: 316 KLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRI 375

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H N ++GE+ G++L++L+P H   Y+LLSN+ A   +W++AR+VR LM  +GI K PG S
Sbjct: 376 HGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVS 435

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQVVFDVDEEEKETV 647
            IE  G +HRF+A   SHP++ +I   L ++  +LKSA GY  +T  V+ D++EE+KE  
Sbjct: 436 VIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHA 495

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           ++ HSEKLA+A+GL++  SKE IRI KNLR+C DCH   KL+S++Y REI+VRD  RFH 
Sbjct: 496 LAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHH 555

Query: 708 FKKG 711
           F+ G
Sbjct: 556 FEDG 559



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 193/415 (46%), Gaps = 57/415 (13%)

Query: 24  ALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNG--LFRSRILFSQIDNPNIFIWNTL 79
            L +H  +V SG   + +I +S LI  +A     NG  L  ++ LFS   + ++  WN +
Sbjct: 19  GLLVHTHVVKSGFECDSYIVNS-LIHLYA-----NGKDLGAAKQLFSLCSDRDVVSWNAM 72

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           + GY +        +++  M+ + ++S N      ++N  A +       ++   +    
Sbjct: 73  IDGYVKRGEMGHTRMVFDRMVCRDVISWNT-----IINGYAIVGKIDEAKRLFDEMP--- 124

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
            E +L   N+++  +   G +  A  +F     RD+VS+N+++  YAQ  +P  AL LF 
Sbjct: 125 -ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFD 183

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M+   ++P   T V++ SAC  L    + K  H   Y N   +  N ++ TA+++MYAK
Sbjct: 184 QMRAVGVKPTEATVVSLLSACAHLG--ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 241

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CG +++A +VF+ M  SK   AW+++I+G    G ++ A+QLF +M +            
Sbjct: 242 CGKISLATQVFNAM-ESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE------------ 288

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
                                + P+++T VA+L AC   G +D G++L      +     
Sbjct: 289 -------------------ASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGE 431
            +     VID+ A+ G ++ A+ +   +P      S   +++ G   HG   LGE
Sbjct: 330 KVEHYDCVIDLLARAGLLEEAMELIGTMPME-PNPSALGALLGGCRIHGNFELGE 383


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/638 (37%), Positives = 367/638 (57%), Gaps = 41/638 (6%)

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           +SR  SP  AL ++ ++       P++ TF   L++CARL   + G  +       G + 
Sbjct: 84  HSRRGSPASALRVFRAL--PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+F+ ++L+H Y+ +G + +A KVF+    RD V+++T++ G+    +P  A+ ++R+M+
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +  ++ D    + +  ACT   + R+G   H  + ++                       
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRH----------------------- 238

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                      GM       +S++  Y + G ++ A ++F  M  R+ VSW+AMISG++Q
Sbjct: 239 -----------GMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQ 287

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G   +AL LF  M++ GI PD   +V+ L AC  +G L  G+ +H   +    F  N  
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF--NCI 345

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L TA IDMY+KCGS+ +A  +F  I    + + L+N++I+    HG G+ ++ +F+EM  
Sbjct: 346 LGTAAIDMYSKCGSLASAQMLFNMISD--RDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G++PD  TF ++L A SH GLVEEGK +F  M+N + I P  +HY C+VDLLAR G ++
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA  L+ SM  +    IW ALL+ C  ++  ++GE     +L+L+PD      L+SN+ A
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            T +W++ RQVRKLM DSG +K PG S IE  GT H FL   +SHPQ +EI   +  + +
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDL 583

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           +++  GY+P T  V  D++EE KE  +SYHSEKLA+AFGL+N+     + I KNLR+CGD
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A K +S+I  REI+VRDA RFH FK G CSC D+W
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 400/713 (56%), Gaps = 44/713 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           +LL    +   L +  +IH   V  GLN  I   + L++     G    +  ++  F  I
Sbjct: 234 NLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCG---DVDSAKQAFKGI 290

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + ++ ++N L+   ++     EA   Y  M S G V+ N  T+  +LN+C+   + ++G
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG-VALNRTTYLSILNACSTSKALEAG 349

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH HI + G   D+ I NALI  Y+  G +  A ++F     RDL+S+N +I GYA+ 
Sbjct: 350 KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARR 409

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           ++   A+ L+++MQ   ++P   TF+ + SAC   +    GK  H  + ++   + SN  
Sbjct: 410 EDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS--GIKSNGH 467

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L  A++NMY +CG +  A+ V                                F+    R
Sbjct: 468 LANALMNMYRRCGSLMEAQNV--------------------------------FEGTQAR 495

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D++SW +MI+G++Q G +  A +LF +M++  + PD +T  +VL  C    AL+ GK++H
Sbjct: 496 DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIH 555

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            +  E+ +   ++ L  A+I+MY +CGS+  A +VF+ +    + V  + ++I G A  G
Sbjct: 556 GRITESGL-QLDVNLGNALINMYIRCGSLQDARNVFHSLQH--RDVMSWTAMIGGCADQG 612

Query: 429 LGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
               +I +F +M+  G +P DG TF ++L AC+H GLV EG Q F SM + YG+ P +EH
Sbjct: 613 EDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEH 672

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGC+V LL R  R  EA  LI  MP+  ++ +W  LL ACR+H N  + E A    L L 
Sbjct: 673 YGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLN 732

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
             + A Y+LLSN+ A   RW++  ++R++M+  GI+K PG S+IE +  +H F+A+ +SH
Sbjct: 733 ARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSH 792

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P+T EI   LK ++++++ AGY P+T  V+ D+ +  +ET +  HSE+LA+A+GLI +  
Sbjct: 793 PETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPP 852

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IRI KNLRICGDCH A K +S++  REI+ RD+ RFH FK G CSC D+W
Sbjct: 853 GTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 156/582 (26%), Positives = 289/582 (49%), Gaps = 49/582 (8%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           + ++ +ALL++C   + L +A +IH Q+V +G+   I  S L+    +  C++ +  +  
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVK-CRS-VLDAHQ 83

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   ++  WN+L+  Y++    ++A  L+  M + G + PN  T+  +L +C   +
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPA 142

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             ++G +IH  IIK G + D  ++N+L+  Y   G +  A +VF G   RD+VSYNT++ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YAQ       L LF +M    I PD  T++ +  A T  +    GK+ H +  +    +
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE--GL 260

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S++ + TA++ M  +C                                G ++ A+Q F 
Sbjct: 261 NSDIRVGTALVTMCVRC--------------------------------GDVDSAKQAFK 288

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            +  RD+V + A+I+  +Q G   +A E + +M S G+  +  T +++L AC    AL+ 
Sbjct: 289 GIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H    E+     ++ +  A+I MYA+CG +  A  +FY +PK  + +  +N+II+G
Sbjct: 349 GKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMPK--RDLISWNAIIAG 405

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            A+      ++ ++++M+  G+KP  VTF+ +L AC++     +GK   E +L  GIK  
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNAKIGEIAGQKL 542
                 ++++  R G L EA  + +     A  VI W +++A    H + +      Q++
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGT--QARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 543 L--DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
              +LEPD+     +LS         E  +Q+   + +SG+Q
Sbjct: 524 QNEELEPDNITFASVLSG-CKNPEALELGKQIHGRITESGLQ 564



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 261/521 (50%), Gaps = 46/521 (8%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           + +++L +C S   L+   +IH QI+ +G        + L+S +   G    L R+R +F
Sbjct: 130 TYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG---DLPRARQVF 186

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + I   ++  +NT++  Y++    +E L L+  M S+GI SP+  T+  +L++    S  
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSML 245

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH   ++ GL  D+ +  AL+      G +++A + F+G   RD+V YN LI   
Sbjct: 246 DEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAAL 305

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ      A   + +M+   +  +  T++++ +AC+       GK  H+ + ++     S
Sbjct: 306 AQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED--GHSS 363

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  A+I+MYA+CG +  A  +F TM   +   +W+++I+GY R  + +R        
Sbjct: 364 DVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYAR--REDRG------- 413

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                 +A+ L+ +M+S G+ P  VT + +L AC    A   GK
Sbjct: 414 ----------------------EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H+  + + +   N  L  A+++MY +CGS+  A +VF       + V  +NS+I+G A
Sbjct: 452 MIHEDILRSGI-KSNGHLANALMNMYRRCGSLMEAQNVFEGT--QARDVISWNSMIAGHA 508

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           QHG  ET+  +F+EM+   L+PD +TF +VL  C +   +E GKQ    +   G++  + 
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
               ++++  R G L +A  +  S+ +  + + W A++  C
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQH-RDVMSWTAMIGGC 608



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 189/350 (54%), Gaps = 17/350 (4%)

Query: 4   LVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           + L  ++ L++L +C   K+L+    IH  I   G +  +   + LIS +A  G    L 
Sbjct: 326 VALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG---DLP 382

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++R LF  +   ++  WN ++ GY+R +   EA+ LY  M S+G V P   TF  +L++C
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG-VKPGRVTFLHLLSAC 441

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A  S++  G  IH  I++ G++ +  + NAL++ Y   G +  A  VFEG+ ARD++S+N
Sbjct: 442 ANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWN 501

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++I G+AQ      A  LF++MQ+  ++PD  TF ++ S C       +GKQ H  + ++
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +  N  L  A+INMY +CG +  A  VF ++   +   +W++MI G   +G+  +A 
Sbjct: 562 GLQLDVN--LGNALINMYIRCGSLQDARNVFHSL-QHRDVMSWTAMIGGCADQGEDMKAI 618

Query: 300 QLFDQMDQR-----DLVSWTAMISGYSQVGGFSQALELFGKMES-LGIHP 343
           +LF QM        D  ++T+++S  +  G   +  ++F  MES  G+ P
Sbjct: 619 ELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLP 668


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/514 (45%), Positives = 335/514 (65%), Gaps = 7/514 (1%)

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           D FT   +  +C +L+   +G+  H    + +G  G +  +  ++I+MY KCG++  A +
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLR-VGLEG-DFYVGASLIDMYVKCGVIGDARK 163

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           +F  M + +  A+W+++I+GY +EG+I  A  LF++M+ R++VSWTAMISGY+Q G   Q
Sbjct: 164 LFDKM-IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQ 222

Query: 329 ALELFGKMESLG--IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
           AL LF +M   G  + P+ VT+V+VL AC    AL+ G+R+H  +   +    N  + TA
Sbjct: 223 ALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD-FANGIGLHLNSSVQTA 281

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +  MYAKC S+  A   F  I +N K +  +N++I+  A HG G  ++++F  M   G++
Sbjct: 282 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 341

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           PD VTF+ +L  CSH GL++ G   F  M   + ++P++EHY C+VDLL R GRL EA  
Sbjct: 342 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 401

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
           LI  MP  A   +W ALLAACR HRN +I E+A ++L  LEPD+  +YVLLSN+ AE   
Sbjct: 402 LISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 461

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           WEE +++R L+   G++K PG S+IE NG  H F+ + KSHPQ KEI   L+ +  K+K 
Sbjct: 462 WEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKM 521

Query: 626 AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLA 685
           AGY+P+T  V+ D+ EEEKE  ++ HSEKLA+AFGL+N+R    +R+TKNLRICGDCH A
Sbjct: 522 AGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAA 581

Query: 686 FKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            K +S+IY REI+VRD  RFH FK G+CSC D+W
Sbjct: 582 TKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 14/377 (3%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           +NFT PFVL SCA LS    G  +H   ++ GLE D ++  +LI  Y   G I +A K+F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +  + RD+ S+N LI GY +  E   A  LF +M+   I     ++ AM S  T+     
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNGFAE 221

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF---STMGMSKSTAAWSS 284
                   + ++   +  N +   +V+   A+   +    R+    + +G+  +++  ++
Sbjct: 222 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTA 281

Query: 285 MISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +   Y +   +  AR  FD + Q  ++L++W  MI+ Y+  G   +A+ +F  M   G+ 
Sbjct: 282 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 341

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD VT + +L  C   G +D G                +     V+D+  + G +  A  
Sbjct: 342 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 401

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSH 461
           +  ++P      S++ ++++    H      IA      L  L+PD    +V +    + 
Sbjct: 402 LISQMPMQAGP-SVWGALLAACRSH--RNLEIAELAARRLFVLEPDNSGNYVLLSNLYAE 458

Query: 462 GGLVEEGKQFFESMLNY 478
            G+ EE K+   ++L Y
Sbjct: 459 AGMWEEVKK-LRALLKY 474



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARL 122
           LF ++++ NI  W  ++ GY+++   ++AL L+  ML  G  + PN  T   VL +CA+ 
Sbjct: 195 LFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQS 254

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNT 180
           ++ + G +IH      GL  +  ++ AL   Y+    +  A   F+      ++L+++NT
Sbjct: 255 AALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNT 314

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I  YA       A+ +F  M  + +QPDA TF+ + S C+       G       + ++
Sbjct: 315 MITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNH----FNDM 370

Query: 241 GCVGS---NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE- 296
           G + S    +     V+++  + G +  A+ + S M M    + W ++++       +E 
Sbjct: 371 GTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEI 430

Query: 297 ---RARQLF 302
               AR+LF
Sbjct: 431 AELAARRLF 439


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 361/606 (59%), Gaps = 34/606 (5%)

Query: 89  PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF--I 146
           PQ +  L   +L        NF  PF L             Q+H  IIK      +    
Sbjct: 24  PQSSETLKIDLL-------RNFNSPFELR------------QVHAQIIKTNAPLSILPLT 64

Query: 147 RNALI-HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           R  L+  F   F Y     +  E       V +N+ +   A+   P  A+ LF +++   
Sbjct: 65  RVGLVCAFTPSFHYAQQIFECVEKQKPETFV-WNSCLKALAEGDSPIDAIMLFYRLRQYD 123

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLM 263
           + PD FT  ++  AC  L D   G+  H VV K    VG  SN+ L+  ++++YA CG M
Sbjct: 124 VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK----VGFRSNLYLQNMIVHLYASCGEM 179

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
             A  +F  M   +    W+ MI+   ++G  E A  LF +M +R++ SWT+MI+GY Q 
Sbjct: 180 GEARLLFEKMP-QRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A+ LF KME  G+  +EVT+VAVL AC  LGALD G R+H+ Y     F RN+ +
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHE-YSNRHGFKRNVRI 297

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
           +  +IDMY KCG ++ A  VF ++ +  +TV  ++++I GLA HG  E ++ +F +M  +
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEE--RTVVSWSAMIGGLAMHGRAEEALRLFSDMSQV 355

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDE 502
           G++P+GVTF+ +L ACSH GL+ EG++FF SM  +YGI PQ+EHYGCMVDLL+R G L E
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           A+  I +MP   N V+W ALL ACR+H+N ++ E A + LL+L+P +  +YV+LSN+ AE
Sbjct: 416 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAE 475

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             RWE+  +VRK M D  ++K PGWS I  +G +H F+A ++SHP T++I    +++  +
Sbjct: 476 AGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEE 535

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           ++  GYVPNT  V+ D++E EK   VS HSEKLAL FGL+N+ ++  IRI KNLRIC DC
Sbjct: 536 MRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDC 595

Query: 683 HLAFKL 688
           H AF++
Sbjct: 596 HSAFQI 601



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 185/430 (43%), Gaps = 70/430 (16%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN- 70
           + LL +  S  +  Q+H QI+ +  N  +S   L     +         ++ +F  ++  
Sbjct: 32  IDLLRNFNSPFELRQVHAQIIKT--NAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQ 89

Query: 71  -PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            P  F+WN+ ++  +  DSP +A++L+   L +  V P+ FT   VL +C  L    +G 
Sbjct: 90  KPETFVWNSCLKALAEGDSPIDAIMLFYR-LRQYDVCPDTFTCSSVLRACLNLLDLSNGR 148

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN---------- 179
            +H  + K G   +L+++N ++H Y+  G +  A  +FE    RD+V++N          
Sbjct: 149 ILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQG 208

Query: 180 ---------------------TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
                                ++I GY Q  +   A+ LF KM+++ ++ +  T VA+ +
Sbjct: 209 DHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLA 268

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC +L    +G + H   Y N      N+ +   +I+MY KCG +  A +VF  M   ++
Sbjct: 269 ACADLGALDLGMRIHE--YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERT 325

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +WS+MI G    G+ E A +LF  M Q                               
Sbjct: 326 VVSWSAMIGGLAMHGRAEEALRLFSDMSQ------------------------------- 354

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           +GI P+ VT + +L AC  +G +  G+R       +      I     ++D+ ++ G + 
Sbjct: 355 VGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLH 414

Query: 399 TALSVFYKIP 408
            A      +P
Sbjct: 415 EAHEFILNMP 424



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 126/264 (47%), Gaps = 5/264 (1%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LFS++   N+  W +++ GY +    +EA+ L+  M   G V  N  T   VL +CA L 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLG 274

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G +IH +  + G + ++ I N LI  Y   G +  A KVFE    R +VS++ +I 
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A       AL LF  M    I+P+  TF+ +  AC+ +     G++F A + ++ G +
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
              +     ++++ ++ GL++ A      M M  +   W +++        +E A +   
Sbjct: 395 -PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 304 QMDQRDLVS---WTAMISGYSQVG 324
            + + D ++   +  + + Y++ G
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAG 477


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 379/615 (61%), Gaps = 20/615 (3%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY---SIFGYINN----AHKVF 167
           +L SC+  S  K    IH  +++  L  D+F+ + L+      S F    N    A+ +F
Sbjct: 18  LLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIF 74

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
                 +L  +N LI  ++   EP  A   + +M  S I PD  TF  +  A +E+    
Sbjct: 75  SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           +G+Q H+ + +  G   +++ ++ ++++MYA CG +  A R+F  MG  +   +W+SM++
Sbjct: 135 VGEQTHSQIVR-FG-FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF-RDVVSWTSMVA 191

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           GY + G +E AR++FD+M  R+L +W+ MI+GY++   F +A++LF  M+  G+  +E  
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           MV+V+ +C  LGAL+FG+R ++ Y+       N+ L TA++DM+ +CG I+ A+ VF  +
Sbjct: 252 MVSVISSCAHLGALEFGERAYE-YVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGL 310

Query: 408 PKNLKTVSL-FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           P+   T SL ++SII GLA HG    ++  F +M  +G  P  VTF  VL ACSHGGLVE
Sbjct: 311 PE---TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVE 367

Query: 467 EGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +G + +E+M  ++GI+P++EHYGC+VD+L R G+L EA   I  M    N+ I  ALL A
Sbjct: 368 KGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGA 427

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           C++++N ++ E  G  L+ ++P+H  +YVLLSN+ A   +W++   +R +M +  ++KPP
Sbjct: 428 CKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPP 487

Query: 586 GWSYIEHNGTLHRF-LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           GWS IE +G +++F +   + HP+  +I    +++  K++  GY  NT    FDVDEEEK
Sbjct: 488 GWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEK 547

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           E+ +  HSEKLA+A+G++ ++   TIRI KNLR+C DCH   KL+SE+Y RE++VRD  R
Sbjct: 548 ESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNR 607

Query: 705 FHLFKKGNCSCMDFW 719
           FH F+ G CSC D+W
Sbjct: 608 FHHFRNGVCSCRDYW 622



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 202/408 (49%), Gaps = 23/408 (5%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGC---------KNGLFRSR 62
           LALL+SC S      IHG ++ +    H+ S   ++   L+ C          N L  + 
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRT----HLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +FSQI NPN+F++N L+R +S    P +A   YT ML K  + P+N TFPF++ + + +
Sbjct: 72  GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEM 130

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
                G Q H  I++FG + D+++ N+L+H Y+  G+I  A ++F     RD+VS+ +++
Sbjct: 131 ECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMV 190

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GY +    C  +   R+M D     + FT+  M +   + N     K      +     
Sbjct: 191 AGYCK----CGMVENAREMFDEMPHRNLFTWSIMINGYAKNN--CFEKAIDLFEFMKREG 244

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW---SSMISGYTREGKIERAR 299
           V +N  +  +VI+  A  G +   ER +  +  S  T      ++++  + R G IE+A 
Sbjct: 245 VVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAI 304

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F+ + + D +SW+++I G +  G   +A+  F +M SLG  P +VT  AVL AC   G
Sbjct: 305 HVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGG 364

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
            ++ G  +++   ++      +     ++DM  + G +  A +   K+
Sbjct: 365 LVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM 412


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 265/782 (33%), Positives = 419/782 (53%), Gaps = 83/782 (10%)

Query: 8    HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
            + S+L L    KSL+   ++H  I+ +G++      ++L+  +   G    L + R +F 
Sbjct: 372  YCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCG---DLVQGRKIFD 428

Query: 67   QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +I N  +F+WN LM  Y++  + +E++ L+  M   G+V  N +TF  VL   A L   K
Sbjct: 429  KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVK 487

Query: 127  SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
               ++H +++K G   +  + N+LI  Y  FG + +AH +F+     D+VS+N++ING  
Sbjct: 488  ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 187  QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                    L +F +M    ++ D  T V++  A   + +  +G+  H    K   C    
Sbjct: 548  VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVK--ACFSEE 605

Query: 247  MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            ++    +++MY+KCG +N A  VF  MG   +  +W+S I+ Y REG    A  LFD+M 
Sbjct: 606  VVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQ 664

Query: 307  Q--------------------------RDLVSW-------------TAMISGYSQVG--- 324
                                       RD+ S+              A+I+ Y++ G   
Sbjct: 665  SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 724

Query: 325  ----------------------GFSQ------ALELFGKMESLGIHPDEVTMVAVLRACV 356
                                  G+SQ      ALELF  M+     PD++TM  VL AC 
Sbjct: 725  EARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACA 783

Query: 357  GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            GL ALD G+ +H   +    F  ++ +  A++DMYAKCG +  A  +F  IPK  K +  
Sbjct: 784  GLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFDMIPK--KDLIS 840

Query: 417  FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
            +  +I+G   HG G  +I+ F EM + G++PD  +F  +L ACSH GL+ EG +FF SM 
Sbjct: 841  WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMR 900

Query: 477  NY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
            N  G++P++EHY C+VDLLAR G L +AY  I+SMP   ++ IW  LL+ CR+H + K+ 
Sbjct: 901  NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 960

Query: 536  EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
            E   + + +LEPD+  +YV+L+N+ AE  +WEE +++RK M   G ++ PG S+IE  G 
Sbjct: 961  EKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGK 1020

Query: 596  LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
             + F+A    HPQ K I+++L+ +TM++++  Y      V+ + D+ EKE +   HSEK 
Sbjct: 1021 FNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKS 1080

Query: 656  ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
            A+AFG++N     T+R++KN R+CGDCH   K +S+  +REI++RD+ RFH FK G CSC
Sbjct: 1081 AMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSC 1140

Query: 716  MD 717
             D
Sbjct: 1141 RD 1142


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/700 (35%), Positives = 396/700 (56%), Gaps = 47/700 (6%)

Query: 26   QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
            QIH  ++ S     +  S+ L++ ++ +G      ++ I   ++D   +  WNT++  Y+
Sbjct: 915  QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD---LISWNTMISSYA 971

Query: 85   RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS---FKSGCQIHCHIIKFGLE 141
            +++   EA+  +  +L  G+  P+ FT   VL +C+       F  G Q+H + IK G+ 
Sbjct: 972  QNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 142  FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
             D F+  ALI  YS  G ++ A  +  G    DL S+N ++ GY +  +   AL  F  M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 202  QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             +  I  D  T      A   L + + GKQ  A   K LG   +++ + + V++MY KCG
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK-LG-FNNDLWVSSGVLDMYIKCG 1148

Query: 262  LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
             M                                  A +LF ++ + D V+WT MISGY 
Sbjct: 1149 DM--------------------------------PNALELFGEISRPDEVAWTTMISGYI 1176

Query: 322  QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            + G    AL ++  M   G+ PDE T   +++A   L AL+ GK++H   ++ + +  + 
Sbjct: 1177 ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK-LDYSLDH 1235

Query: 382  FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            F+ T+++DMY KCGS+  A  VF K+  +++ V  +N+++ GLAQHG  + ++ +FR M+
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKM--DVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQ 1293

Query: 442  LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRL 500
              G++PD VTF+ VL ACSH GL  E  ++F++M   YGI P++EHY C+VD L R GR+
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 501  DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
             EA  +I SMP+ A++ ++RALL ACR   +A+  +    KLL L+P   + YVLLSN+ 
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIY 1413

Query: 561  AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
            A + +W++    R +M    ++K PG+S+I+    +H F+   +SHPQ   I   ++D+ 
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLM 1473

Query: 621  MKLKSAG-YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             +++  G YVP+T   + DV+EEEKE  + YHSEKLA+AFGLI++    TIR+ KNLR+C
Sbjct: 1474 KRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533

Query: 680  GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            GDCH A K +S++ +REI++RDA RFH F+ G CSC D+W
Sbjct: 1534 GDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 140/288 (48%), Gaps = 8/288 (2%)

Query: 20   SLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
            +LKQ  QI    +  G N+   +SS  L  +       N L     LF +I  P+   W 
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNAL----ELFGEISRPDEVAWT 1169

Query: 78   TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            T++ GY  +     AL +Y  M   G V P+ +TF  ++ + + L++ + G QIH +++K
Sbjct: 1170 TMISGYIENGDEDHALSVYHLMRVSG-VQPDEYTFATLIKASSCLTALEQGKQIHANVVK 1228

Query: 138  FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                 D F+  +L+  Y   G + +A++VF     R +V +N ++ G AQ      AL L
Sbjct: 1229 LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNL 1288

Query: 198  FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            FR MQ + IQPD  TF+ + SAC+         ++   ++K  G +   +   + +++  
Sbjct: 1289 FRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYG-ITPEIEHYSCLVDAL 1347

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
             + G +  AE V ++M    S + + +++     +G  E A+++ D++
Sbjct: 1348 GRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL 1395



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 220/513 (42%), Gaps = 78/513 (15%)

Query: 21   LKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
            LK   + H +IV SG L     ++ LI+ ++  G    L  +R +F +  + ++  WN++
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGS---LCSARQVFDKSSDRDLVTWNSI 683

Query: 80   MRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-----QIHC 133
            +  Y++ +DS  E ++    +   G++    F+   +  +        SG       +H 
Sbjct: 684  LAAYAQFADSSYENVLEGFRLF--GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 134  HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            + +K G E DLF+  AL++ Y  +G +  A  +F+    RD V +N ++  Y +      
Sbjct: 742  YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE------ 795

Query: 194  ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
                      +  Q +A  F + F       D           + NL CV          
Sbjct: 796  ----------NSFQDEALRFFSAFHRSGFXPD-----------FSNLHCV---------- 824

Query: 254  INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
                   G +N          +S +    +  +  Y        A ++F      ++ +W
Sbjct: 825  ------IGGVNS--------DVSNNRKRHAEQVKAY--------AMKMFPFDQGSNIFAW 862

Query: 314  TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
               ++ +   G    A++ F  +    I  D VT+V +L A VG   LD G+++H   I+
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 374  NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
            +  F   + ++ ++++MY+K G +  A   F   P+ L  +S +N++IS  AQ+ L   +
Sbjct: 923  S-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPE-LDLIS-WNTMISSYAQNNLEMEA 979

Query: 434  IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKPQMEHYGCM 490
            I  FR++   GLKPD  T  +VL ACS G   E    G Q     +  GI         +
Sbjct: 980  ICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 491  VDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            +DL ++ G++DEA  L+    YD +   W A++
Sbjct: 1040 IDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/700 (35%), Positives = 396/700 (56%), Gaps = 47/700 (6%)

Query: 26   QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
            QIH  ++ S     +  S+ L++ ++ +G      ++ I   ++D   +  WNT++  Y+
Sbjct: 915  QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD---LISWNTMISSYA 971

Query: 85   RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS---FKSGCQIHCHIIKFGLE 141
            +++   EA+  +  +L  G+  P+ FT   VL +C+       F  G Q+H + IK G+ 
Sbjct: 972  QNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 142  FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
             D F+  ALI  YS  G ++ A  +  G    DL S+N ++ GY +  +   AL  F  M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 202  QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             +  I  D  T      A   L + + GKQ  A   K LG   +++ + + V++MY KCG
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK-LG-FNNDLWVSSGVLDMYIKCG 1148

Query: 262  LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
             M                                  A +LF ++ + D V+WT MISGY 
Sbjct: 1149 DM--------------------------------PNALELFGEISRPDEVAWTTMISGYI 1176

Query: 322  QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            + G    AL ++  M   G+ PDE T   +++A   L AL+ GK++H   ++ + +  + 
Sbjct: 1177 ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK-LDYSLDH 1235

Query: 382  FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            F+ T+++DMY KCGS+  A  VF K+  +++ V  +N+++ GLAQHG  + ++ +FR M+
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKM--DVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQ 1293

Query: 442  LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRL 500
              G++PD VTF+ VL ACSH GL  E  ++F++M   YGI P++EHY C+VD L R GR+
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 501  DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
             EA  +I SMP+ A++ ++RALL ACR   +A+  +    KLL L+P   + YVLLSN+ 
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIY 1413

Query: 561  AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
            A + +W++    R +M    ++K PG+S+I+    +H F+   +SHPQ   I   ++D+ 
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLM 1473

Query: 621  MKLKSAG-YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             +++  G YVP+T   + DV+EEEKE  + YHSEKLA+AFGLI++    TIR+ KNLR+C
Sbjct: 1474 KRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533

Query: 680  GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            GDCH A K +S++ +REI++RDA RFH F+ G CSC D+W
Sbjct: 1534 GDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 220/513 (42%), Gaps = 78/513 (15%)

Query: 21   LKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
            LK   + H +IV SG L     ++ LI+ ++  G    L  +R +F +  + ++  WN++
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGS---LCSARQVFDKSSDRDLVTWNSI 683

Query: 80   MRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-----QIHC 133
            +  Y++ +DS  E ++    +   G++    F+   +  +        SG       +H 
Sbjct: 684  LAAYAQFADSSYENVLEGFRLF--GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 134  HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            + +K G E DLF+  AL++ Y  +G +  A  +F+    RD V +N ++  Y +      
Sbjct: 742  YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE------ 795

Query: 194  ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
                      +  Q +A  F + F       D           + NL CV          
Sbjct: 796  ----------NSFQDEALRFFSAFHRSGFFPD-----------FSNLHCV---------- 824

Query: 254  INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
                   G +N          +S +    +  +  Y        A ++F      ++ +W
Sbjct: 825  ------IGGVNS--------DVSNNRKRHAEQVKAY--------AMKMFPFDQGSNIFAW 862

Query: 314  TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
               ++ +   G    A++ F  +    I  D VT+V +L A VG   LD G+++H   I+
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 374  NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
            +  F   + ++ ++++MY+K G +  A   F   P+ L  +S +N++IS  AQ+ L   +
Sbjct: 923  S-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPE-LDLIS-WNTMISSYAQNNLEMEA 979

Query: 434  IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKPQMEHYGCM 490
            I  FR++   GLKPD  T  +VL ACS G   E    G Q     +  GI         +
Sbjct: 980  ICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 491  VDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            +DL ++ G++DEA  L+    YD +   W A++
Sbjct: 1040 IDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 140/288 (48%), Gaps = 8/288 (2%)

Query: 20   SLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
            +LKQ  QI    +  G N+   +SS  L  +       N L     LF +I  P+   W 
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNAL----ELFGEISRPDEVAWT 1169

Query: 78   TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            T++ GY  +     AL +Y  M   G V P+ +TF  ++ + + L++ + G QIH +++K
Sbjct: 1170 TMISGYIENGDEDHALSVYHLMRVSG-VQPDEYTFATLIKASSCLTALEQGKQIHANVVK 1228

Query: 138  FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                 D F+  +L+  Y   G + +A++VF     R +V +N ++ G AQ      AL L
Sbjct: 1229 LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNL 1288

Query: 198  FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            FR MQ + IQPD  TF+ + SAC+         ++   ++K  G +   +   + +++  
Sbjct: 1289 FRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYG-ITPEIEHYSCLVDAL 1347

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
             + G +  AE V ++M    S + + +++     +G  E A+++ D++
Sbjct: 1348 GRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKL 1395



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 114/504 (22%), Positives = 215/504 (42%), Gaps = 73/504 (14%)

Query: 27   IHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF-RSRILFSQIDNPNIFIWNTLMRGYS 84
            +HG  V  G    +  S  L++ +    CK GL  ++R+LF ++   +  +WN +++ Y 
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIY----CKYGLVGQARLLFDKMPERDAVLWNVMLKAYV 794

Query: 85   RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
             +    EAL  +++    G        FP   N             +HC I   G+  D+
Sbjct: 795  ENSFQDEALRFFSAFHRSGF-------FPDFSN-------------LHCVI--GGVNSDV 832

Query: 145  FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
               N   H   +  Y   A K+F      ++ ++N  +  +    +   A+  F+ +  S
Sbjct: 833  -SNNRKRHAEQVKAY---AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 205  CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
             I  D+ T V + SA    +D  +G+Q HA+V K+       + +  +++NMY+K G++ 
Sbjct: 889  TIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS--SFAPVVPVSNSLMNMYSKAGVVY 946

Query: 265  MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
             AE+ F                                    + DL+SW  MIS Y+Q  
Sbjct: 947  AAEKTFIN--------------------------------SPELDLISWNTMISSYAQNN 974

Query: 325  GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF---GKRLHQQYIENVVFGRNI 381
               +A+  F  +   G+ PD+ T+ +VLRAC      ++   G ++H   I+  +   + 
Sbjct: 975  LEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII-NDS 1033

Query: 382  FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            F++TA+ID+Y+K G +D A  + +   K    ++ +N+I+ G  +      ++  F  M 
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHG--KYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 442  LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
             MG+  D +T  T + A      +++GKQ     +  G    +     ++D+  + G + 
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 502  EAYGLIQSMPYDANSVIWRALLAA 525
             A  L   +    + V W  +++ 
Sbjct: 1152 NALELFGEISR-PDEVAWTTMISG 1174



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 138/365 (37%), Gaps = 81/365 (22%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           VL+H  L  L  + ++  Q LQ++   +  G  HH   S+  +   ++  +  +    + 
Sbjct: 509 VLKHE-LSVLRSTARASGQRLQVY---ICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLD 564

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL-------- 116
           FS+   P +     L+R + +  S               I S  +F  PF+L        
Sbjct: 565 FSE-PQPGLLRVKMLLRAHLKVPS---------------ISSRTSFACPFLLFCRFSSLS 608

Query: 117 ----------NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
                      S   ++  K G + H  I+  G   D ++ N LI  YS  G + +A +V
Sbjct: 609 SSSSQWFSLLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQV 668

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPC-----PALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           F+ S  RDLV++N+++  YAQ  +           LF  +++        T   +   C 
Sbjct: 669 FDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCL 728

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGS--NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
                ++ +  H    K    +G   ++ +  A++N+Y K GL                 
Sbjct: 729 LSGFVQVSETVHGYAVK----IGFELDLFVSGALVNIYCKYGL----------------- 767

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                          + +AR LFD+M +RD V W  M+  Y +     +AL  F      
Sbjct: 768 ---------------VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRS 812

Query: 340 GIHPD 344
           G  PD
Sbjct: 813 GFFPD 817



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           R+ + +  L  GKR H + + +     + +LT  +I MY+KCGS+ +A  VF K   + +
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDL-PDRYLTNNLITMYSKCGSLCSARQVFDK--SSDR 675

Query: 413 TVSLFNSIISGLAQHGLG--ETSIAVFREMELM---GLKPDGVTFVTVLCACSHGGLVEE 467
            +  +NSI++  AQ      E  +  FR   L+   G     +T   +L  C   G V+ 
Sbjct: 676 DLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQV 735

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +      +  G +  +   G +V++  + G + +A  L   MP + ++V+W  +L A
Sbjct: 736 SETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/703 (35%), Positives = 394/703 (56%), Gaps = 43/703 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           + L+   ++H  ++ +G +  + +++ L+  ++  G    +  + ++F ++   ++  WN
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLG---DIRMAAVVFGKVPETDVVSWN 272

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
             + G       Q AL L   M S G+V PN FT   +L +CA   +F  G QIH  ++K
Sbjct: 273 AFISGCVLHGHDQHALELLLQMKSSGLV-PNVFTLSSILKACAGSGAFNLGRQIHGFMVK 331

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              + D +I   L+  Y+  G +++A KVF+    RDLV +N LI+G +   +   AL L
Sbjct: 332 ANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSL 391

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +M+      +  T  A+  +   L      +Q HA+  K LG +  + ++   +I+ Y
Sbjct: 392 FCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEK-LGFLSDSHVV-NGLIDSY 449

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KC  +N A RVF   G                                  D++++T+MI
Sbjct: 450 WKCDCLNYAYRVFEKHG--------------------------------SYDIIAFTSMI 477

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I+   F
Sbjct: 478 TALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ-F 536

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++F   A++  YAKCGSI+ A   F  +P+  K V  ++++I GLAQHG G+ ++ VF
Sbjct: 537 MSDVFAGNALVYTYAKCGSIEDADLAFSGLPE--KGVVSWSAMIGGLAQHGHGKRALDVF 594

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M    + P+ +T  +VLCAC+H GLV+E K++F SM   +GI+   EHY CM+DLL R
Sbjct: 595 HRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGR 654

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+LD+A  L+ SMP+  N+ +W ALLAA R+HR+ ++G +A +KL  LEP+    +VLL
Sbjct: 655 AGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLL 714

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           +N  A    W++  +VRKLM DS ++K P  S++E    +H F+   KSHP+ ++I   L
Sbjct: 715 ANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKL 774

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
            ++   +  AGYVPN    + DVD+ EKE ++S+HSE+LA+AF LI++ +   IR+ KNL
Sbjct: 775 DELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNL 834

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RIC DCH AFK +S+I  REI++RD  RFH F+ G CSC D+W
Sbjct: 835 RICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 144/527 (27%), Positives = 240/527 (45%), Gaps = 44/527 (8%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID-NPNIFIWNTLMRGYS 84
           Q+H   + +GL   I  +   +  A+ G    +  +R++F +     N   WN LM  Y 
Sbjct: 121 QLHALAMATGLGGDIFVAN--ALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           ++D    A+ ++  M+  G V PN F F  V+N+C      ++G ++H  +I+ G + D+
Sbjct: 179 KNDRCSHAVKVFGEMVWGG-VQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F  NAL+  YS  G I  A  VF      D+VS+N  I+G         AL L  +M+ S
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            + P+ FT  ++  AC       +G+Q H  + K      S+  +   +++MYAK GL++
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVK--ANADSDNYIAFGLVDMYAKHGLLD 355

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A++V                                FD + QRDLV W A+ISG S   
Sbjct: 356 DAKKV--------------------------------FDWIPQRDLVLWNALISGCSHGA 383

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
             ++AL LF +M   G   +  T+ AVL++   L A+   +++H    E + F  +  + 
Sbjct: 384 QHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVH-ALAEKLGFLSDSHVV 442

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
             +ID Y KC  ++ A  VF K       +  F S+I+ L+Q   GE +I +F EM   G
Sbjct: 443 NGLIDSYWKCDCLNYAYRVFEK--HGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKG 500

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           L PD     ++L AC+     E+GKQ    ++       +     +V   A+ G +++A 
Sbjct: 501 LDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDAD 560

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDH 549
                +P +   V W A++     H + K       +++D  + P+H
Sbjct: 561 LAFSGLP-EKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNH 606



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 223/447 (49%), Gaps = 46/447 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           LL    + +SL Q   IH  ++ SGL   +  + L+SF+  S C+     +R +F +I +
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGL-FAVFRNHLLSFY--SKCRLP-GSARRVFDEIPD 65

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P    W++L+  YS +  P++AL  + SM S   V  N F  P VL  CA  + F  G Q
Sbjct: 66  PCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCS-VRCNEFVLPVVLK-CAPDAGF--GTQ 121

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGYAQVK 189
           +H   +  GL  D+F+ NAL+  Y  FG+++ A  VF E    R+ VS+N L++ Y +  
Sbjct: 122 LHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKND 181

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ +F +M    +QP+ F F  + +ACT   D   G++ HA+V +       ++  
Sbjct: 182 RCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRT--GYDKDVFT 239

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+++MY+K G + MA  VF  +  +    +W++ ISG                     
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVPET-DVVSWNAFISG--------------------- 277

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                 ++ G+ Q      ALEL  +M+S G+ P+  T+ ++L+AC G GA + G+++H 
Sbjct: 278 -----CVLHGHDQ-----HALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHG 327

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             ++      N ++   ++DMYAK G +D A  VF  IP+  + + L+N++ISG +    
Sbjct: 328 FMVKANADSDN-YIAFGLVDMYAKHGLLDDAKKVFDWIPQ--RDLVLWNALISGCSHGAQ 384

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVL 456
              ++++F  M   G   +  T   VL
Sbjct: 385 HAEALSLFCRMRKEGFDVNRTTLAAVL 411


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/693 (35%), Positives = 383/693 (55%), Gaps = 28/693 (4%)

Query: 45  LISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI 104
           L++ ++  G    L  +R +F ++   ++  WN+++  Y++   P+ AL +++ M ++  
Sbjct: 168 LVAMYSRCG---SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFG 224

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
             P++ T   VL  CA + +   G Q H   +   +  ++F+ N L+  Y+ FG ++ A+
Sbjct: 225 FRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEAN 284

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA----- 219
            VF     +D+VS+N ++ GY+Q+     A+ LF +MQ+  I+ D  T+ A  S      
Sbjct: 285 TVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRG 344

Query: 220 --------CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
                   C ++    I      ++    GC     L+    I+ YA    M++ +    
Sbjct: 345 LGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKN--- 401

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQA 329
             G        + +I  Y +  K++ AR +FD +   +RD+V+WT MI GYSQ G  ++A
Sbjct: 402 --GHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459

Query: 330 LELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           LEL  +M  E     P+  T+   L AC  L AL  GK++H   + N      +F++  +
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCL 519

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           IDMYAKCG I  A  VF  + +  K    + S+++G   HG GE ++ +F EM  +G K 
Sbjct: 520 IDMYAKCGDIGDARLVFDNMME--KNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKL 577

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           DGVT + VL ACSH G++++G ++F  M  ++G+ P  EHY C+VDLL R GRL+ A  L
Sbjct: 578 DGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRL 637

Query: 507 IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566
           I+ MP +   V+W ALL+ CR+H   ++GE A +K+ +L  ++   Y LLSNM A   RW
Sbjct: 638 IEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRW 697

Query: 567 EEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA 626
           ++  ++R LM   GI+K PG S++E       F    K+HP  KEI  +L D   ++K  
Sbjct: 698 KDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDI 757

Query: 627 GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAF 686
           GYVP T   + DVD+EEK+ ++  HSEKLALA+G++ +     IRITKNLR+CGDCH AF
Sbjct: 758 GYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAF 817

Query: 687 KLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             +S I   EI++RD+ RFH FK G CSC  +W
Sbjct: 818 TYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/534 (30%), Positives = 275/534 (51%), Gaps = 28/534 (5%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
            +  CK++ Q   IH +++  G+     +S LIS +   GC +        F   D   +
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSD-AGV 92

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
           + WN+L+R Y  +    + L  +  M S    +P+N+TFPFV  +C  +SS + G   H 
Sbjct: 93  YHWNSLIRSYGNNGRANKCLSSFCLMHSLSW-TPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
                G   ++F+ NAL+  YS  G +++A KVF+     D+VS+N++I  YA++ +P  
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 194 ALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
           AL +F KM +    +PD  T V +   C  +    +GKQFH     +   +  NM +   
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSE--MIQNMFVGNC 269

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR---- 308
           +++MYAK G+M+ A  VFS M + K   +W++M++GY++ G+ E A +LF+QM +     
Sbjct: 270 LVDMYAKFGMMDEANTVFSNMPV-KDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKM 328

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D+V+W+A ISGY+Q G   +AL +  +M S GI P+EVT+++VL  C  +GAL  GK +H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 369 QQYIENVV------FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
              I+  +       G    +   +IDMYAKC  +D A ++F  +    + V  +  +I 
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIG 448

Query: 423 GLAQHGLGETSIAVFREM--ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           G +QHG    ++ +  EM  E    +P+  T    L AC+    +  GKQ       Y +
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHA----YAL 504

Query: 481 KPQMEHY-----GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + Q          C++D+ A+ G + +A  +  +M  + N V W +L+    +H
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMH 557


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 362/607 (59%), Gaps = 41/607 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           ++ +CAR  S      IH H+        +F+ N+LIH Y   G + +A +VF+G  ARD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           + S+ +LI GYAQ   P  AL L   M     +P+ FTF ++  A        IG+Q HA
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +  K       ++ + +A+++MYA+CG                                +
Sbjct: 190 LTVKY--DWHDDVYVGSALLDMYARCG--------------------------------R 215

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           ++ A  +FDQ++ ++ VSW A+I+G+++ G     L +F +M+  G      T  +V  A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
             G+GAL+ GK +H   I++   G  +  F+   ++DMYAK GS+  A  VF ++ K  K
Sbjct: 276 IAGIGALEQGKWVHAHMIKS---GERLSAFVGNTILDMYAKSGSMIDARKVFDRVDK--K 330

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +NS+++  AQ+GLG  ++  F EM   G+  + +TF+++L ACSHGGLV+EGKQ+F
Sbjct: 331 DVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF 390

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           + M  Y ++P+++HY  +VDLL R G L++A   I  MP    + +W ALL +CR+H+NA
Sbjct: 391 DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNA 450

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           KIG+ A   + +L+PD     VLL N+ A T +W+ A +VRK+M  +G++K P  S++E 
Sbjct: 451 KIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEI 510

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
             ++H F+A+  +HP+++EI    ++++++++ AGYVPNT  V+  VDE+E++  + YHS
Sbjct: 511 ENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHS 570

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EK+ALAF LIN     TIRI KN+RICGDCH AF+ +S++++REI+VRD  RFH F  G+
Sbjct: 571 EKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGS 630

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 631 CSCGDYW 637



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 213/444 (47%), Gaps = 47/444 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG-LFRSRILF 65
           + SL+      +SL  A  IH  +  S     +   + LI  +    CK G +  +R +F
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLY----CKCGAVADARRVF 122

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  W +L+ GY+++D P EAL L   ML +G   PN FTF  +L +    +S 
Sbjct: 123 DGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGASASS 181

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G QIH   +K+    D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI G+
Sbjct: 182 GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF 241

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +    L +F +MQ +  +   FT+ ++FSA   +     GK  HA + K+   + +
Sbjct: 242 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
              +   +++MYAK G M  A +VF                                D++
Sbjct: 302 --FVGNTILDMYAKSGSMIDARKVF--------------------------------DRV 327

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D++D+V+W +M++ ++Q G   +A+  F +M   G+H +++T +++L AC   G +  GK
Sbjct: 328 DKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGK 387

Query: 366 RLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           +      E N+    + ++T  V+D+  + G ++ AL   +K+P    T +++ +++   
Sbjct: 388 QYFDMMKEYNLEPEIDHYVT--VVDLLGRAGLLNDALVFIFKMPMK-PTAAVWGALLGSC 444

Query: 425 AQHGLGETSIAVFREMELMGLKPD 448
             H      I  F    +  L PD
Sbjct: 445 RMH--KNAKIGQFAADHVFELDPD 466



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 4/175 (2%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +++ AC    +LD  + +H  ++    F  ++FL  ++I +Y KCG++  A  VF  +P 
Sbjct: 69  SLITACARYRSLDDARAIHA-HLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPA 127

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + +  + S+I+G AQ+ + + ++ +   M     KP+G TF ++L A         G+
Sbjct: 128 --RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           Q     + Y     +     ++D+ AR GR+D A  +   +    N V W AL+A
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE-SKNGVSWNALIA 239


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/650 (38%), Positives = 370/650 (56%), Gaps = 49/650 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WNT +R  ++     +AL LY  ML  G   PN FTFPF L SCA LS    G Q H  I
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-ARDL-VSYNTLINGYAQVKEPCP 193
            K G  F+ F++  LI  Y     ++NA KVFE +  +R L V YN L++GY    +   
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ LFR+M +  +  ++ T + +  AC    +  +G   H    K      S++ +    
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY--GFDSDVSVVNCF 193

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I MY KCG +N A                                ++LFD+M  + L+SW
Sbjct: 194 ITMYMKCGSVNYA--------------------------------QKLFDEMPVKGLISW 221

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            AM+SGY+Q G  +  LEL+  M+  G+HPD VT+V VL +C  LGA   G  +  + I+
Sbjct: 222 NAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK-IQ 280

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  N FL  A+I+MYA+CG++  A +VF  +P+  +T+  + +II G   HG GE +
Sbjct: 281 ASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE--RTLVSWTAIIGGYGMHGHGEIA 338

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVD 492
           + +F+EM   G++PDG  FV VL ACSH GL ++G ++F+ M  NY ++P  EHY CMVD
Sbjct: 339 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 398

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R GRL EA  LI+SMP   +  +W ALL AC++H+N ++ E+A +++++LEP++  +
Sbjct: 399 LLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGY 458

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVLLSN+ +     +   ++R +M +  ++K PG SY+E  G +H F+   ++H Q+ EI
Sbjct: 459 YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEI 518

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE---TVVSYHSEKLALAFGLINSRSKET 669
             +L+++   +      P       D  EE  +   T V  HSEKLA+AFGL+N+ +   
Sbjct: 519 YRVLEELEAIIMQEFGKPEK-----DNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAE 573

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + I KNLRIC DCHL FK++S+I  R++ VRDA RFH F+ G+CSC D+W
Sbjct: 574 VVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 177/402 (44%), Gaps = 48/402 (11%)

Query: 15  LESCKSLKQAL---QIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLF-RSRILFSQID 69
           L+SC +L   +   Q HGQI   G +      + LIS +    CK  L   +R +F +  
Sbjct: 56  LKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMY----CKGSLVDNARKVFEENF 111

Query: 70  NPN--IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +       +N L+ GY  +    EA++L+  M  +G V  N+ T   ++ +C    + + 
Sbjct: 112 HSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLEL 170

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +HC  +K+G + D+ + N  I  Y   G +N A K+F+    + L+S+N +++GYAQ
Sbjct: 171 GSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQ 230

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSN 246
                  L L+R M  + + PD  T V + S+C  L    +G   H V +K       SN
Sbjct: 231 NGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG---HEVEFKIQASGFTSN 287

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             L  A+INMYA+CG +  A+ VF  M   ++  +W+++I GY   G  E A QLF +M 
Sbjct: 288 PFLNNALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 346

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +                                GI PD    V VL AC   G  D G  
Sbjct: 347 RS-------------------------------GIEPDGTAFVCVLSACSHAGLTDQGLE 375

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             +    N          + ++D+  + G +  A ++   +P
Sbjct: 376 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 417



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 9/300 (3%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRSRILF 65
           +LL L+ +C S   L+    +H   +  G +  +S     I+ +   G  N    ++ LF
Sbjct: 154 TLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVN---YAQKLF 210

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++    +  WN ++ GY+++      L LY +M   G V P+  T   VL+SCA L + 
Sbjct: 211 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNG-VHPDPVTLVGVLSSCANLGAQ 269

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G ++   I   G   + F+ NALI+ Y+  G +  A  VF+G   R LVS+  +I GY
Sbjct: 270 SVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGY 329

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   A+ LF++M  S I+PD   FV + SAC+       G ++  ++ +N   +  
Sbjct: 330 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQ-LEP 388

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                + ++++  + G +  A+ +  +M +    A W +++        +E A   F+++
Sbjct: 389 GPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV 448


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/656 (37%), Positives = 392/656 (59%), Gaps = 16/656 (2%)

Query: 72   NIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            N   WN+ +  + S + S    L ++  +  KG+V  ++  +   L +C R+     G +
Sbjct: 486  NYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF-DSEVYSVALKTCTRVMDIWLGME 544

Query: 131  IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
            IH  +IK G + D+++R AL++FY     +  A++VF      + + +N  I    Q ++
Sbjct: 545  IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 604

Query: 191  PCPALWLFRKMQDSCIQPDAFTFVAMFSAC-TELNDPRIGKQFHAVVYKN-LGCVGSNML 248
                + LFRKMQ S ++ +  T V +  A  +EL    +GK+ H  V +N   C   ++ 
Sbjct: 605  LQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDC---DVY 661

Query: 249  LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
            + T++I+MY K   +  A+ VF  M  +++  AW+S++SGY+ +G  E A +L +QM++ 
Sbjct: 662  VGTSLIDMYVKNHSLTSAQAVFDNMK-NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKE 720

Query: 309  ----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
                DLV+W  MISGY+  G   +AL  F +M+  G+ P+  ++  +LRAC  L  L  G
Sbjct: 721  GIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKG 780

Query: 365  KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            K +H   I N  F  ++F+ TA+IDMY+K  S+  A  VF +I    KT++ +N +I G 
Sbjct: 781  KEIHCLSIRNG-FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN--KTLASWNCMIMGF 837

Query: 425  AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
            A  GLG+ +I+VF EM+ +G+ PD +TF  +L AC + GL+ EG ++F+SM+ +Y I P+
Sbjct: 838  AIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPR 897

Query: 484  MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +EHY CMVDLL R G LDEA+ LI +MP   ++ IW ALL +CR+H+N K  E A + L 
Sbjct: 898  LEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLF 957

Query: 544  DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
             LEP++ A+Y+L+ N+ +   RWE+   +R+LM  +G++    WS+I+ N  +H F + +
Sbjct: 958  KLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDE 1017

Query: 604  KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            K HP   +I   L  +  ++K  GYVP+   V  ++DE EK+ ++  H+EKLA+ +GLI 
Sbjct: 1018 KPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIK 1077

Query: 664  SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             ++ E IR+ KN RIC DCH A K +S +  RE+ +RD +RFH F++G CSC DFW
Sbjct: 1078 MKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 148/327 (45%), Gaps = 53/327 (16%)

Query: 4   LVLEHSSLLALLESCKS----LKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGL 58
           L  E ++++ +L++  S    L    + HG ++ +G +  +   + LI  +  +   + L
Sbjct: 620 LKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKN---HSL 676

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-------------- 104
             ++ +F  + N NIF WN+L+ GYS     ++AL L   M  +GI              
Sbjct: 677 TSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGY 736

Query: 105 --------------------VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
                               V PN+ +   +L +CA LS  + G +IHC  I+ G   D+
Sbjct: 737 AMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDV 796

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+  ALI  YS    + NAHKVF     + L S+N +I G+A       A+ +F +MQ  
Sbjct: 797 FVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKV 856

Query: 205 CIQPDAFTFVAMFSACTELNDPRIG---KQFHAVV--YKNLGCVGSNMLLKTAVINMYAK 259
            + PDA TF A+ SAC   N   IG   K F +++  Y+    +   +     ++++  +
Sbjct: 857 GVGPDAITFTALLSACK--NSGLIGEGWKYFDSMITDYR----IVPRLEHYCCMVDLLGR 910

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMI 286
            G ++ A  +  TM +      W +++
Sbjct: 911 AGYLDEAWDLIHTMPLKPDATIWGALL 937



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 177/421 (42%), Gaps = 73/421 (17%)

Query: 24  ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
            ++IHG ++  G +  +     L++F+   G   GL ++  +F ++ NP   +WN  +  
Sbjct: 542 GMEIHGCLIKRGFDLDVYLRCALMNFY---GRCWGLEKANQVFHEMPNPEALLWNEAIIL 598

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
             +S+  Q+ + L+  M    + +        +  S + L     G + H ++++ G + 
Sbjct: 599 NLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDC 658

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLAR----------------------------- 173
           D+++  +LI  Y     + +A  VF+    R                             
Sbjct: 659 DVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQME 718

Query: 174 ------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
                 DLV++N +I+GYA       AL  F +MQ   + P++ +   +  AC  L+  +
Sbjct: 719 KEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQ 778

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            GK+ H +  +N G +  ++ + TA+I+MY+K   +  A +VF  +  +K+ A+W+ MI 
Sbjct: 779 KGKEIHCLSIRN-GFI-EDVFVATALIDMYSKSSSLKNAHKVFRRI-QNKTLASWNCMIM 835

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           G+   G  + A  +F++                               M+ +G+ PD +T
Sbjct: 836 GFAIFGLGKEAISVFNE-------------------------------MQKVGVGPDAIT 864

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
             A+L AC   G +  G +     I +      +     ++D+  + G +D A  + + +
Sbjct: 865 FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 924

Query: 408 P 408
           P
Sbjct: 925 P 925



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 6/248 (2%)

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY-SQVGGFSQALELFGKMES 338
           AA  ++IS Y   G    A  +F     R+ + W + +  + S  G     LE+F ++  
Sbjct: 457 AAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHG 516

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+  D       L+ C  +  +  G  +H   I+   F  +++L  A+++ Y +C  ++
Sbjct: 517 KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKR-GFDLDVYLRCALMNFYGRCWGLE 575

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF+++P N + +    +II  L    L +  + +FR+M+   LK +  T V VL A
Sbjct: 576 KANQVFHEMP-NPEALLWNEAIILNLQSEKL-QKGVELFRKMQFSFLKAETATIVRVLQA 633

Query: 459 C-SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
             S  G +  GK+    +L  G    +     ++D+  ++  L  A  +  +M  + N  
Sbjct: 634 SISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK-NRNIF 692

Query: 518 IWRALLAA 525
            W +L++ 
Sbjct: 693 AWNSLVSG 700


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/787 (33%), Positives = 434/787 (55%), Gaps = 78/787 (9%)

Query: 4   LVLEHSSLLALLESCKSLKQAL---QIHGQIVHSGLNH-HISS-SQLISFFALSGCKNGL 58
           ++++ ++L  +L++C+S+   +   Q+H   V  G +   +S+ + L+  +   G    +
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCG---SV 151

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
                +F  +   N+  W +L+ G + +    E + L+  M ++GI  PN FTF  VL++
Sbjct: 152 CEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW-PNPFTFASVLSA 210

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
            A   +   G ++H   +KFG    +F+ N+L++ Y+  G + +A  VF     RD+VS+
Sbjct: 211 VASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSW 270

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV-- 236
           NTL+ G    +    AL LF + + +  +    T+  +   C  L    + +Q H+ V  
Sbjct: 271 NTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 237 ----------------YKNLG-----------CVGS-NMLLKTAVINMYAKCGLMNMAER 268
                           Y   G             GS N++  TA+I+   + G + +A  
Sbjct: 331 HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 269 VFSTM-------------GMSKST---------------------AAWSSMISGYTREGK 294
           +FS M              M K++                     +  +++++ Y++ G 
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGS 450

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            E A  +F  ++Q+D+V+W+AM+S ++Q G    A  LF KM   GI P+E T+ +V+ A
Sbjct: 451 TEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 355 CVGLGA-LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           C    A +D G++ H   I+   +   I +++A++ MY++ G+ID+A  VF +  +  + 
Sbjct: 511 CACPSAGVDQGRQFHAISIK-YRYHDAICVSSALVSMYSRKGNIDSAQIVFER--QTDRD 567

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           +  +NS+ISG AQHG    +I  FR+ME  G++ DGVTF+ V+  C+H GLV EG+Q+F+
Sbjct: 568 LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFD 627

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM+ ++ I P MEHY CMVDL +R G+LDE   LI+ MP+ A +++WR LL ACR+H+N 
Sbjct: 628 SMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNV 687

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G+ +  KLL LEP   + YVLLSN+ A   +W+E  +VRKLMD   ++K  G S+I+ 
Sbjct: 688 ELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F+A  KSHP + +I   LK +  +LK  GY PNT  V+ D+ E++KE ++  HS
Sbjct: 748 KNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHS 807

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LALAFGLI +     ++I KNLR+CGDCH+  K++S I  REI++RD  RFH F  G 
Sbjct: 808 ERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGA 867

Query: 713 CSCMDFW 719
           CSC DFW
Sbjct: 868 CSCGDFW 874



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 298 ARQLFDQMDQRDL-VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
           AR   D++ +RD  V    ++  Y++ G   + L+ F      G+  D  T+  VL+AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            +     G++LH   ++       +   T+++DMY KCGS+   + VF  +PK  K V  
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPK--KNVVT 168

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           + S+++G A   +    +A+F  M   G+ P+  TF +VL A +  G ++ G++     +
Sbjct: 169 WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSV 228

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            +G +  +     ++++ A+ G +++A  +   M    + V W  L+A  +L+
Sbjct: 229 KFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAGLQLN 280


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 371/614 (60%), Gaps = 21/614 (3%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFD-----LFIRNALIHFYSIFGYINNAHKVFEG 169
           +LNSC  L   K   QIH  ++  G+  +      F+    +H  +   Y N   K+   
Sbjct: 15  LLNSCTTLKEMK---QIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYAN---KLLNH 68

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKM---QDSCIQPDAFTFVAMFSACTELNDP 226
           +    L + N++I  Y++   P  +   +  +    ++ + PD +TF  +   C +L   
Sbjct: 69  NNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAH 128

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
             G   H  V K+   +  +  ++T ++ MYA+ G ++    VF    +       ++M+
Sbjct: 129 VTGLCVHGAVIKHGFELDPH--VQTGLVFMYAELGCLSSCHNVFDG-AVEPDLVTQTAML 185

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
           +   + G I+ AR++FD+M +RD V+W AMI+GY+Q G   +AL++F  M+  G+  +EV
Sbjct: 186 NACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEV 245

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           +MV VL AC  L  LD G+ +H  Y+E       + L TA++DMYAKCG++D A+ VF+ 
Sbjct: 246 SMVLVLSACTHLQVLDHGRWVHA-YVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWG 304

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           + +  + V  ++S I GLA +G GE S+ +F +M+  G++P+G+TF++VL  CS  GLVE
Sbjct: 305 MKE--RNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVE 362

Query: 467 EGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG++ F+SM N YGI PQ+EHYG MVD+  R GRL EA   I SMP   +   W ALL A
Sbjct: 363 EGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHA 422

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR+++N ++GEIA +K+++LE  +   YVLLSN+ A+   WE    +R+ M   G++K P
Sbjct: 423 CRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLP 482

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S IE +G +H F+   KSHP+  EIE+ L++++  L+ +GYV NT  V+FD++EEEKE
Sbjct: 483 GCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKE 542

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             +S HSEK+A+AFGLI+ +    IR+  NLRIC DCH   K++S+I+ REI+VRD  RF
Sbjct: 543 DALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRF 602

Query: 706 HLFKKGNCSCMDFW 719
           H FK G CSC D+W
Sbjct: 603 HHFKDGECSCKDYW 616



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 209/434 (48%), Gaps = 75/434 (17%)

Query: 12  LALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++LL SC +LK+  QIH Q+V  G LN+     Q ++  AL    N  + +++L +  +N
Sbjct: 13  ISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLL-NHNNN 71

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSML--SKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           P +F  N+++R YS+S +P ++   Y ++L  +   +SP+N+TF F++ +CA+L +  +G
Sbjct: 72  PTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTG 131

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL----------------- 171
             +H  +IK G E D  ++  L+  Y+  G +++ H VF+G++                 
Sbjct: 132 LCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKC 191

Query: 172 --------------ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
                          RD V++N +I GYAQ      AL +F  MQ   ++ +  + V + 
Sbjct: 192 GDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVL 251

Query: 218 SACTELNDPRIGKQFHAVV--YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           SACT L     G+  HA V  YK    V   + L TA+++MYAKCG ++ A +VF  M  
Sbjct: 252 SACTHLQVLDHGRWVHAYVERYK----VRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK- 306

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            ++   WSS I G    G  E +  LF+ M +                            
Sbjct: 307 ERNVYTWSSAIGGLAMNGFGEESLDLFNDMKRE--------------------------- 339

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV-FGRNIFLTTAVIDMYAKC 394
               G+ P+ +T ++VL+ C  +G ++ G++ H   + NV   G  +     ++DMY + 
Sbjct: 340 ----GVQPNGITFISVLKGCSVVGLVEEGRK-HFDSMRNVYGIGPQLEHYGLMVDMYGRA 394

Query: 395 GSIDTALSVFYKIP 408
           G +  AL+    +P
Sbjct: 395 GRLKEALNFINSMP 408


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/787 (33%), Positives = 434/787 (55%), Gaps = 78/787 (9%)

Query: 4   LVLEHSSLLALLESCKSLKQAL---QIHGQIVHSGLNH-HISS-SQLISFFALSGCKNGL 58
           ++++ ++L  +L++C+S+   +   Q+H   V  G +   +S+ + L+  +   G    +
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCG---SV 151

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
                +F  +   N+  W +L+ G + +    E + L+  M ++GI  PN FTF  VL++
Sbjct: 152 CEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW-PNPFTFASVLSA 210

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
            A   +   G ++H   +KFG    +F+ N+L++ Y+  G + +A  VF     RD+VS+
Sbjct: 211 VASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSW 270

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV-- 236
           NTL+ G    +    AL LF + + +  +    T+  +   C  L    + +Q H+ V  
Sbjct: 271 NTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 237 ----------------YKNLG-----------CVGS-NMLLKTAVINMYAKCGLMNMAER 268
                           Y   G             GS N++  TA+I+   + G + +A  
Sbjct: 331 HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 269 VFSTM-------------GMSKSTAA---------------------WSSMISGYTREGK 294
           +FS M              M K++ +                      +++++ Y++ G 
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGS 450

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            E A  +F  ++Q+D+V+W+AM+S ++Q G    A  LF KM   GI P+E T+ +V+ A
Sbjct: 451 TEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 355 CVGLGA-LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           C    A +D G++ H   I+   +   I +++A++ MY++ G+ID+A  VF +  +  + 
Sbjct: 511 CACPSAGVDQGRQFHAISIK-YRYHDAICVSSALVSMYSRKGNIDSAQIVFER--QTDRD 567

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           +  +NS+ISG AQHG    +I  FR+ME  G++ DGVTF+ V+  C+H GLV EG+Q+F+
Sbjct: 568 LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFD 627

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM+ ++ I P MEHY CMVDL +R G+LDE   LI+ MP+ A +++WR LL ACR+H+N 
Sbjct: 628 SMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNV 687

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G+ +  KLL LEP   + YVLLSN+ A   +W+E  +VRKLMD   ++K  G S+I+ 
Sbjct: 688 ELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F+A  KSHP + +I   LK +  +LK  GY PNT  V+ D+ E++KE ++  HS
Sbjct: 748 KNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHS 807

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LALAFGLI +     ++I KNLR+CGDCH+  K++S I  REI++RD  RFH F  G 
Sbjct: 808 ERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGA 867

Query: 713 CSCMDFW 719
           CSC DFW
Sbjct: 868 CSCGDFW 874



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 298 ARQLFDQMDQRDL-VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
           AR   D++ +RD  V    ++  Y++ G   + L+ F      G+  D  T+  VL+AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            +     G++LH   ++       +   T+++DMY KCGS+   + VF  +PK  K V  
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPK--KNVVT 168

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           + S+++G A   +    +A+F  M   G+ P+  TF +VL A +  G ++ G++     +
Sbjct: 169 WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSV 228

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            +G +  +     ++++ A+ G +++A  +   M    + V W  L+A  +L+
Sbjct: 229 KFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAGLQLN 280


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/689 (36%), Positives = 391/689 (56%), Gaps = 38/689 (5%)

Query: 55  KNGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           +NG F  +R+LF ++   ++  WN +++GY R+ +  +A  L+  M  + + S N     
Sbjct: 102 RNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSG 161

Query: 114 FVLNSC--------------------ARLSSFKSGCQIHCHIIKFGLE--FDLFIRNALI 151
           +  N C                    A LS++    ++    + FG    + L   N L+
Sbjct: 162 YAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLL 221

Query: 152 HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAF 211
             +     I  A + F+    RD+VS+NT+I GYAQ  E   A  LF    D     D F
Sbjct: 222 GGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF----DESPVHDVF 277

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T+ AM S   +       ++    + +       N +   A++  Y +   + MA+ +F 
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMPER------NEVSWNAMLAGYVQGERVEMAKELFD 331

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
            M   ++ + W++MI+GY + GKI  A+ LFD+M +RD VSW AMI+GYSQ G   +AL 
Sbjct: 332 VMP-CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALR 390

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF  ME  G   +  +  + L  C  + AL+ GK+LH + ++   +    F+  A++ MY
Sbjct: 391 LFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG-YETGCFVGNALLLMY 449

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
            KCGSI+ A  +F ++    K +  +N++I+G ++HG GE ++  F  M+  GLKPD  T
Sbjct: 450 CKCGSIEEANDLFKEMAG--KDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507

Query: 452 FVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            V VL ACSH GLV++G+Q+F +M  +YG++P  +HY CMVDLL R G L+EA+ L+++M
Sbjct: 508 MVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P++ ++ IW  LL A R+H N ++ E A  K+  +EP++   YVLLSN+ A + RW +  
Sbjct: 568 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 627

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           ++R  M D G++K PG+S+IE     H F    + HP+  EI   L+D+ +++K AGYV 
Sbjct: 628 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVS 687

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
            T  V+ DV+EEEKE +V YHSE+LA+A+G++   S   IR+ KNLR+C DCH A K ++
Sbjct: 688 KTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMA 747

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++  R I++RD  RFH FK G+CSC D+W
Sbjct: 748 KVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 224/502 (44%), Gaps = 58/502 (11%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + +I  WN  +  Y R+    EAL ++  M     VS N     ++ N    L+      
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARM---- 111

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
                +     E DL   N +I  Y     +  A ++FE    RD+ S+NT+++GYAQ  
Sbjct: 112 -----LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNG 166

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY----KNLGCVGS 245
               A  +F +M     + +  ++ A+ SA  + +     K   A V     +N   V  
Sbjct: 167 CVDDARRVFDRMP----EKNDVSWNALLSAYVQNS-----KLEEACVLFGSRENWALVSW 217

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N LL       + K   +  A + F +M + +   +W+++I+GY + G+I+ ARQLFD+ 
Sbjct: 218 NCLLGG-----FVKKKKIVEARQFFDSMKV-RDVVSWNTIITGYAQNGEIDEARQLFDES 271

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
              D+ +WTAM+SGY Q     +A ELF +M       +EV+  A+L   V    ++  K
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAK 327

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            L      +V+  RN+     +I  YA+CG I  A ++F K+PK  +    + ++I+G +
Sbjct: 328 ELF-----DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPK--RDPVSWAAMIAGYS 380

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           Q G    ++ +F  ME  G + +  +F + L  C+    +E GKQ    ++  G +    
Sbjct: 381 QSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET--- 437

Query: 486 HYGCMVD-----LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA-- 538
             GC V      +  + G ++EA  L + M    + V W  ++A    H     GE A  
Sbjct: 438 --GCFVGNALLLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRH---GFGEEALR 491

Query: 539 ---GQKLLDLEPDHGAHYVLLS 557
                K   L+PD      +LS
Sbjct: 492 FFESMKREGLKPDDATMVAVLS 513



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 36/301 (11%)

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W+  IS Y R G+   A ++F +M +   VS+ AMISGY + G F  A  LF +M     
Sbjct: 62  WNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP---- 117

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
             D V+   +++  V    L   + L ++  E  V   N  L+      YA+ G +D A 
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSG-----YAQNGCVDDAR 172

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF ++P+  K    +N+++S   Q+   E +  +F   E          +  V   C  
Sbjct: 173 RVFDRMPE--KNDVSWNALLSAYVQNSKLEEACVLFGSRE---------NWALVSWNCLL 221

Query: 462 GGLVE-----EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           GG V+     E +QFF+SM    +      +  ++   A++G +DEA  L    P   + 
Sbjct: 222 GGFVKKKKIVEARQFFDSMKVRDVVS----WNTIITGYAQNGEIDEARQLFDESPVH-DV 276

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
             W A+++    +R  +      ++L D  P+   + V  + MLA   + E     ++L 
Sbjct: 277 FTWTAMVSGYIQNRMVE----EARELFDRMPER--NEVSWNAMLAGYVQGERVEMAKELF 330

Query: 577 D 577
           D
Sbjct: 331 D 331


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 361/593 (60%), Gaps = 40/593 (6%)

Query: 130 QIHCHIIKFGLEFDL--FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           QIH   I+ G+  +     ++ +    S+   ++ A+ VF      ++ ++NT+I GYA+
Sbjct: 36  QIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAE 95

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P PA   +R+M  SC++PD  T+  +  A ++  + R G+  H+V  +N     S +
Sbjct: 96  SDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRN--GFESLV 153

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            ++ +++++YA CG                                  E A ++F+ M +
Sbjct: 154 FVQNSLLHIYAACG--------------------------------DTESAYKVFELMKE 181

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RDLV+W +MI+G++  G  ++AL LF +M   G+ PD  T+V++L A   LGAL+ G+R+
Sbjct: 182 RDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRV 241

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  Y+  V   +N  +T +++D+YAKCG+I  A  VF ++ +  +    + S+I GLA +
Sbjct: 242 HV-YLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE--RNAVSWTSLIVGLAVN 298

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEH 486
           G GE ++ +F+EME  GL P  +TFV VL ACSH G+++EG ++F  M    GI P++EH
Sbjct: 299 GFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEH 358

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGCMVDLL+R G + +AY  IQ+MP   N+VIWR LL AC +H +  +GEIA   LL+LE
Sbjct: 359 YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLE 418

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P H   YVLLSN+ A   RW + + +R+ M   G++K PG+S +E    ++ F    +SH
Sbjct: 419 PKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSH 478

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           PQ++++  +L+ +T  LK  GYVP+T  V+ D++EEEKE  +SYHSEK+A+AF L+N+  
Sbjct: 479 PQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPP 538

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+ KNLR+C DCH+A KL+++IY REI++RD  RFH F+ G+CSC D+W
Sbjct: 539 GTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 221/440 (50%), Gaps = 45/440 (10%)

Query: 12  LALLESCKSLKQAL-QIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++LL+ C S K  L QIH   +  G  LN+      LI  F +      +  +  +F+ I
Sbjct: 21  ISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLI--FTIVSLSAPMSYAYNVFTVI 78

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            NPN+F WNT++RGY+ SD+P  A + Y  M+    V P+  T+PF+L + ++  + + G
Sbjct: 79  HNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVV-SCVEPDTHTYPFLLKAISKSLNVREG 137

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH   I+ G E  +F++N+L+H Y+  G   +A+KVFE    RDLV++N++ING+A  
Sbjct: 138 EAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALN 197

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  AL LFR+M    ++PD FT V++ SA  EL    +G++ H  + K +G +  N  
Sbjct: 198 GRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK-VG-LSKNSH 255

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  +++++YAKCG +  A+RVFS M   ++  +W+S+I G    G  E A +LF +M+ +
Sbjct: 256 VTNSLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQ 314

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
            LV                               P E+T V VL AC   G LD G    
Sbjct: 315 GLV-------------------------------PSEITFVGVLYACSHCGMLDEGFEYF 343

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           ++  E       I     ++D+ ++ G +  A      +P     V ++ +++     HG
Sbjct: 344 RRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAV-IWRTLLGACTIHG 402

Query: 429 -LGETSIAVFREMELMGLKP 447
            LG   IA      L+ L+P
Sbjct: 403 HLGLGEIA---RSHLLNLEP 419


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/687 (36%), Positives = 402/687 (58%), Gaps = 33/687 (4%)

Query: 40  ISSSQLISF-FALSGC--KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           + +  L+S+   +SGC     L  +R+LF Q+   ++  WN ++ GY+++   +EA  ++
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             M  K  +S N     +V N   R+   +        + +   +++L   N ++  Y  
Sbjct: 166 DEMPCKNSISWNGMLAAYVQN--GRIEDAR-------RLFESKADWELISWNCMMGGYVK 216

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
              + +A  +F+    RD VS+NT+I+GYAQ  E   A  LF   ++S ++ D FT+ AM
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTWTAM 272

Query: 217 FSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
            S   +   L++ R  + F  +  KN   V  N     A+I  Y +C  M+ A  +F  M
Sbjct: 273 VSGYVQNGMLDEAR--RVFDGMPEKN--SVSWN-----AIIAGYVQCKRMDQARELFEAM 323

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
              ++ ++W++MI+GY + G I +AR  FD+M QRD +SW A+I+GY+Q G   +AL LF
Sbjct: 324 P-CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
            +M+  G   +  T  + L  C  + AL+ GK++H + ++        ++  A++ MY K
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK-AGLESGCYVGNALLVMYCK 441

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG+ID A  VF  I +  K V  +N++I+G A+HG G+ ++ +F  M+  G+ PD VT V
Sbjct: 442 CGNIDDAYIVFEGIEE--KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMV 499

Query: 454 TVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            VL ACSH GLV++G ++F SM  +YGI    +HY CM+DLL R GRLD+A  L+++MP+
Sbjct: 500 GVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPF 559

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           + ++  W ALL A R+H N ++GE A + + ++EPD+   YVLLSN+ A + RW +  ++
Sbjct: 560 EPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRM 619

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           R  M D G++K PG+S++E    +H F      HP+   I   L+++ +K+K  GYV +T
Sbjct: 620 RLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSST 679

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
             V+ DV+EEEK  ++ YHSEKLA+AFG++   +   IR+ KNLR+C DCH A K +S+I
Sbjct: 680 KLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKI 739

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
             R I++RD+ RFH F  G CSC D+W
Sbjct: 740 VGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 205/491 (41%), Gaps = 94/491 (19%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + +I  WN  +  + R+     AL L+ SM  +  +S N               +  SGC
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWN---------------AMISGC 90

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
                     L  D F             Y+  A ++FE    RDLVS+N +I+G  + +
Sbjct: 91  ----------LSNDKF-------------YL--ARQLFEKMPTRDLVSWNVMISGCVRYR 125

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A  LF +M +     D  ++ AM S   +    +  K+    ++  + C   N + 
Sbjct: 126 NLRAARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEAKE----IFDEMPC--KNSIS 175

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
              ++  Y + G +  A R+F +        +W+ M+ GY +  ++  AR +FD+M +RD
Sbjct: 176 WNGMLAAYVQNGRIEDARRLFESKA-DWELISWNCMMGGYVKRNRLVDARGIFDRMPERD 234

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            VSW  MISGY+Q G   +A  LF   E   +  D  T  A++   V  G LD  +R+  
Sbjct: 235 EVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTWTAMVSGYVQNGMLDEARRVFD 290

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS---------- 419
              E     +N     A+I  Y +C  +D A  +F  +P   + VS +N+          
Sbjct: 291 GMPE-----KNSVSWNAIIAGYVQCKRMDQARELFEAMP--CQNVSSWNTMITGYAQNGD 343

Query: 420 ---------------------IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
                                II+G AQ G GE ++ +F EM+  G + +  TF + L  
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           C+    +E GKQ    ++  G++        ++ +  + G +D+AY + + +  +   V 
Sbjct: 404 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE-EKEVVS 462

Query: 519 WRALLAACRLH 529
           W  ++A    H
Sbjct: 463 WNTMIAGYARH 473



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
           +  S++        W+  I+ + R G+ + A +LF+ M +R  +SW AMISG      F 
Sbjct: 38  KTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFY 97

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
            A +LF KM +     D V+   ++  CV    L   + L  Q  E     R++    A+
Sbjct: 98  LARQLFEKMPT----RDLVSWNVMISGCVRYRNLRAARLLFDQMPE-----RDVVSWNAM 148

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF---------- 437
           +  YA+ G +  A  +F ++P   K    +N +++   Q+G  E +  +F          
Sbjct: 149 LSGYAQNGYVKEAKEIFDEMP--CKNSISWNGMLAAYVQNGRIEDARRLFESKADWELIS 206

Query: 438 ------------REMELMGL-----KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
                       R ++  G+     + D V++ T++   +  G + E ++ FE       
Sbjct: 207 WNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE------ 260

Query: 481 KPQME--HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            P  +   +  MV    ++G LDEA  +   MP + NSV W A++A 
Sbjct: 261 SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP-EKNSVSWNAIIAG 306



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 54/265 (20%)

Query: 6   LEHSSLLALLESCK---SLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNG-LF 59
           L  S+  + L +C    +L+   Q+HG++V +GL    ++ ++ L+ +     CK G + 
Sbjct: 392 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMY-----CKCGNID 446

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            + I+F  I+   +  WNT++ GY+R    +EAL+L+ SM   GI+ P++ T   VL++C
Sbjct: 447 DAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSAC 505

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI---FGYINNAHKVFEGSLARDLV 176
           +           H  ++  G E+          FYS+   +G   N+             
Sbjct: 506 S-----------HTGLVDKGTEY----------FYSMTQDYGITANSKH----------- 533

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
            Y  +I+   +      A  L + M     +PDA T+ A+  A     +  +G++   ++
Sbjct: 534 -YTCMIDLLGRAGRLDDAQNLMKNMP---FEPDAATWGALLGASRIHGNTELGEKAAKMI 589

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCG 261
           ++       N  +   + N+YA  G
Sbjct: 590 FE---MEPDNSGMYVLLSNLYAASG 611


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/712 (36%), Positives = 407/712 (57%), Gaps = 78/712 (10%)

Query: 22  KQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFR-SRILFSQIDNPNIFIWNTL 79
           K     H  ++  G ++ H   + ++  +A    KNG    +R LF Q+    +  WN++
Sbjct: 112 KSGNMFHAYVLKLGHIDDHFIRNAILDMYA----KNGQVDLARNLFEQMAERTLADWNSM 167

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           + G  +S +  EA+VL+  M ++ I++                                 
Sbjct: 168 ISGCWKSGNETEAVVLFNMMPARNIIT--------------------------------- 194

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
                    +++  Y+  G + +A + F+    R +VS+N + + YAQ + P  AL LF 
Sbjct: 195 -------WTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFH 247

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDP-------RIGKQFHAVVYKNLGCVGSNMLLKTA 252
           +M +  I PD  T+V   S+C+ + DP       R+  Q H V+         N  +KTA
Sbjct: 248 QMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVL---------NSFVKTA 298

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +++M+AK G + +A  +F  +G  ++   W+ MIS YTR GK+  AR+LFD M +RD+VS
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVS 358

Query: 313 WTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           W +MI+GY+Q G  + ++ELF +M S + I PDEVT+ +VL AC  +GAL         +
Sbjct: 359 WNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL-----SYW 413

Query: 372 IENVVFGRNIFLT----TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           + ++V  +NI L      ++I MY+KCGS+  A  +F  +    + V  FN++ISG A +
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM--GTRDVVSFNTLISGFAAN 471

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
           G G+ +I +   ME  G++PD VT++ VL ACSH GL+ EGK  F+S+      P ++HY
Sbjct: 472 GHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ----APTVDHY 527

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            CMVDLL R G LDEA  LIQSMP   ++ ++ +LL A R+H+   +GE+A  KL +LEP
Sbjct: 528 ACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEP 587

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
            +  +YVLLSN+ A   RWE+ ++VR++M   G++K  G S++E+ G +H+F    +SH 
Sbjct: 588 QNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHE 647

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q+K+I  +L ++  K+K  G+V +    + DV+EEEKE ++  HSEKLA+ F L+ S   
Sbjct: 648 QSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVG 707

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            TIR+ KNLRIC DCH A K++S++  REI+VRD  RFH F +G CSC D+W
Sbjct: 708 TTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/650 (38%), Positives = 370/650 (56%), Gaps = 49/650 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WNT +R  ++     +AL LY  ML  G   PN FTFPF L SCA LS    G Q H  I
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-ARDL-VSYNTLINGYAQVKEPCP 193
            K G  F+ F++  LI  Y     ++NA KVFE +  +R L V YN L++GY    +   
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ LFR+M +  +  ++ T + +  AC    +  +G   H    K      S++ +    
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY--GFDSDVSVVNCF 184

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I MY KCG +N A                                ++LFD+M  + L+SW
Sbjct: 185 ITMYMKCGSVNYA--------------------------------QKLFDEMPVKGLISW 212

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            AM+SGY+Q G  +  LEL+  M+  G+HPD VT+V VL +C  LGA   G  +  + ++
Sbjct: 213 NAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK-MQ 271

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  N FL  A+I+MYA+CG++  A +VF  +P+  +T+  + +II G   HG GE +
Sbjct: 272 ASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE--RTLVSWTAIIGGYGMHGHGEIA 329

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVD 492
           + +F+EM   G++PDG  FV VL ACSH GL ++G ++F+ M  NY ++P  EHY CMVD
Sbjct: 330 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 389

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R GRL EA  LI+SMP   +  +W ALL AC++H+N ++ E+A +++++LEP++  +
Sbjct: 390 LLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGY 449

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVLLSN+ +     +   ++R +M +  ++K PG SY+E  G +H F+   ++H Q+ EI
Sbjct: 450 YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEI 509

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE---TVVSYHSEKLALAFGLINSRSKET 669
             +L+++   +      P       D  EE  +   T V  HSEKLA+AFGL+N+ +   
Sbjct: 510 YRVLEELEAIIMQEFGKPEK-----DNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAE 564

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + I KNLRIC DCHL FK++S+I  R++ VRDA RFH F+ G+CSC D+W
Sbjct: 565 VVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 177/402 (44%), Gaps = 48/402 (11%)

Query: 15  LESCKSLKQAL---QIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLF-RSRILFSQID 69
           L+SC +L   +   Q HGQI   G +      + LIS +    CK  L   +R +F +  
Sbjct: 47  LKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMY----CKGSLVDNARKVFEENF 102

Query: 70  NPN--IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +       +N L+ GY  +    +A++L+  M  +G V  N+ T   ++ +C    + + 
Sbjct: 103 HSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLEL 161

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +HC  +K+G + D+ + N  I  Y   G +N A K+F+    + L+S+N +++GYAQ
Sbjct: 162 GSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQ 221

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSN 246
                  L L+R M  + + PD  T V + S+C  L    +G   H V +K       SN
Sbjct: 222 NGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG---HEVEFKMQASGFTSN 278

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             L  A+INMYA+CG +  A+ VF  M   ++  +W+++I GY   G  E A QLF +M 
Sbjct: 279 PFLNNALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 337

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +                                GI PD    V VL AC   G  D G  
Sbjct: 338 RS-------------------------------GIEPDGTAFVCVLSACSHAGLTDQGLE 366

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             +    N          + ++D+  + G +  A ++   +P
Sbjct: 367 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 408



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 9/300 (3%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRSRILF 65
           +LL L+ +C S   L+    +H   +  G +  +S     I+ +   G  N    ++ LF
Sbjct: 145 TLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVN---YAQKLF 201

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++    +  WN ++ GY+++      L LY +M   G V P+  T   VL+SCA L + 
Sbjct: 202 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNG-VHPDPVTLVGVLSSCANLGAQ 260

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G ++   +   G   + F+ NALI+ Y+  G +  A  VF+G   R LVS+  +I GY
Sbjct: 261 SVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGY 320

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   A+ LF++M  S I+PD   FV + SAC+       G ++  ++ +N   +  
Sbjct: 321 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQ-LEP 379

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                + ++++  + G +  A+ +  +M +    A W +++        +E A   F+++
Sbjct: 380 GPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV 439


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/706 (36%), Positives = 406/706 (57%), Gaps = 78/706 (11%)

Query: 28  HGQIVHSG-LNHHISSSQLISFFALSGCKNGLFR-SRILFSQIDNPNIFIWNTLMRGYSR 85
           H  ++  G ++ H   + ++  +A    KNG    +R LF Q+    +  WN+++ G  +
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYA----KNGQVDLARNLFEQMAERTLADWNSMISGCWK 173

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           S +  EA+VL+  M ++ I++                                       
Sbjct: 174 SGNETEAVVLFNMMPARNIIT--------------------------------------- 194

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
              +++  Y+  G + +A + F+    R +VS+N + + YAQ + P  AL LF +M +  
Sbjct: 195 -WTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEG 253

Query: 206 IQPDAFTFVAMFSACTELNDP-------RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           I PD  T+V   S+C+ + DP       R+  Q H V+         N  +KTA+++M+A
Sbjct: 254 ITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVL---------NSFVKTALLDMHA 304

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           K G + +A  +F  +G  ++   W+ MIS YTR GK+  AR+LFD M +RD+VSW +MI+
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 319 GYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           GY+Q G  + ++ELF +M S + I PDEVT+ +VL AC  +GAL         ++ ++V 
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL-----SYWVLDIVR 419

Query: 378 GRNIFLT----TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
            +NI L      ++I MY+KCGS+  A  +F  +    + V  FN++ISG A +G G+ +
Sbjct: 420 EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM--GTRDVVSFNTLISGFAANGHGKEA 477

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           I +   ME  G++PD VT++ VL ACSH GL+ EGK  F+S+      P ++HY CMVDL
Sbjct: 478 IKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ----APTVDHYACMVDL 533

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           L R G LDEA  LIQSMP   ++ ++ +LL A R+H+   +GE+A  KL +LEP +  +Y
Sbjct: 534 LGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNY 593

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLLSN+ A   RWE+ ++VR++M   G++K  G S++E+ G +H+F    +SH Q+K+I 
Sbjct: 594 VLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIY 653

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
            +L ++  K+K  G+V +    + DV+EEEKE ++  HSEKLA+ F L+ S    TIR+ 
Sbjct: 654 KLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVV 713

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLRIC DCH A K++S++  REI+VRD  RFH F +G CSC D+W
Sbjct: 714 KNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 364/613 (59%), Gaps = 46/613 (7%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSL 171
           F+   C  +S  K   Q H  +++  L  +    + LI F ++   G +N A K+F    
Sbjct: 16  FLKTHCTSISKTK---QAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQ 72

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
             D    NT+I GYA+ + P  A+ L+  M +  +  D +T+  + +AC  L   ++G++
Sbjct: 73  NPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRR 132

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
           FH  V KN    GS++ +  A+I  Y  CG    A  VF                     
Sbjct: 133 FHCEVLKN--GFGSDLFVINALIQFYHNCGSFGCACDVF--------------------- 169

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVA 350
                      D+   RD+V+W  MI+ +   G   +A +L  +M  L  + PDEVTMV+
Sbjct: 170 -----------DESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVS 218

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRN--IFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++ AC  LG L+ GK LH    E   F  N  + L TA++DMYAKCGSID AL VF ++ 
Sbjct: 219 LVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM- 277

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
             ++ V  +N++I GLA HG GE +I++F +ME   L PD VTF+ +LCACSH GLV+EG
Sbjct: 278 -RVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEG 336

Query: 469 KQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
              F++M N + I+P+MEHYGC+VDLL R  ++D+A   I++MP  ANSV+W  LL ACR
Sbjct: 337 LAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACR 396

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
              +  + E  G+++++LEPD    YV+LSN+ A   +W+ A ++RK M + GI+K PG 
Sbjct: 397 SGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGC 456

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVDEEEKET 646
           S+IE NG +H+F+A  +SH QT++I  M+++MT ++    G+VP T  V+FD++EEEKE 
Sbjct: 457 SWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEH 516

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            +  HSEKLA+A GLI++ S   IRI KNLR+C DCH   K+ S++Y REI+ RD  RFH
Sbjct: 517 SLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFH 576

Query: 707 LFKKGNCSCMDFW 719
            FK+G+CSCMDFW
Sbjct: 577 HFKEGSCSCMDFW 589



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 225/435 (51%), Gaps = 42/435 (9%)

Query: 18  CKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           C S+ +  Q H  ++ + L H+ + SS+LISF ALS     L  +R LF+Q+ NP+ FI 
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSH-SGDLNYARKLFTQMQNPDPFIC 79

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           NT++RGY+RS +P EA+ LY  M+ +G V  +N+T+PFVL +CARL + K G + HC ++
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRFHCEVL 138

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G   DLF+ NALI FY   G    A  VF+ S  RD+V++N +IN +        A  
Sbjct: 139 KNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFD 198

Query: 197 LFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC--VGSNMLLKTAV 253
           L  +M     ++PD  T V++  AC +L +   GK  H+   K L    +  +++L+TA+
Sbjct: 199 LLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS-YSKELDKFEINCDLVLETAL 257

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           ++MYAKCG +++A +VF  M + ++   W+++I G    G  E A  LFDQM+   L+  
Sbjct: 258 VDMYAKCGSIDLALQVFRRMRV-RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM-- 314

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                                        PD+VT +A+L AC   G +D G  + Q    
Sbjct: 315 -----------------------------PDDVTFIALLCACSHAGLVDEGLAMFQAMKN 345

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
                  +     V+D+  +   +D AL+    +P  +K  S+  + + G  + G G   
Sbjct: 346 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMP--IKANSVLWATLLGACRSG-GHFD 402

Query: 434 IAVFREMELMGLKPD 448
           +A      ++ L+PD
Sbjct: 403 LAEKIGRRVIELEPD 417


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/676 (37%), Positives = 387/676 (57%), Gaps = 43/676 (6%)

Query: 45   LISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI 104
            LI  +A  G    +  +R++F  + + ++  WN +M G +++    EA  ++  M  +G+
Sbjct: 464  LIHMYAKCG---SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGL 520

Query: 105  VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
            V P++ T+  +LN+     + +   ++H H ++ GL  D  + +A IH Y   G I++A 
Sbjct: 521  V-PDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDAR 579

Query: 165  KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
             +F+    R + ++N +I G AQ +    AL LF +MQ     PDA TF+ + SA  +  
Sbjct: 580  LLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEE 639

Query: 225  DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
                 K+ H+    + G V  ++ +  A+++ Y+KCG                       
Sbjct: 640  ALEWVKEVHSHA-TDAGLV--DLRVGNALVHTYSKCG----------------------- 673

Query: 285  MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                      ++ A+Q+FD M +R++ +WT MI G +Q G    A   F +M   GI PD
Sbjct: 674  ---------NVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPD 724

Query: 345  EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
              T V++L AC   GAL++ K +H   +   +   ++ +  A++ MYAKCGSID A SVF
Sbjct: 725  ATTYVSILSACASTGALEWVKEVHNHAVSAGLVS-DLRVGNALVHMYAKCGSIDDARSVF 783

Query: 405  YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
              + +  + V  +  +I GLAQHG G  ++  F +M+  G KP+G ++V VL ACSH GL
Sbjct: 784  DDMVE--RDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGL 841

Query: 465  VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            V+EG++ F SM  +YGI+P MEHY CMVDLL R G L+EA   I +MP + +   W ALL
Sbjct: 842  VDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALL 901

Query: 524  AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
             AC  + N ++ E A ++ L L+P   + YVLLSN+ A T +WE+   VR +M   GI+K
Sbjct: 902  GACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRK 961

Query: 584  PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
             PG S+IE +  +H F+    SHP++KEI   L D+  +LK+ GYVP+T  V+ + D+E 
Sbjct: 962  EPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEH 1021

Query: 644  KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
            KE  +  HSEKLA+ +GL++++SK+ IR+ KNLR+C DCH A K +S+I  REI+ RDA 
Sbjct: 1022 KEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAK 1081

Query: 704  RFHLFKKGNCSCMDFW 719
            RFH FK G CSC D+W
Sbjct: 1082 RFHHFKDGVCSCGDYW 1097



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 153/592 (25%), Positives = 276/592 (46%), Gaps = 63/592 (10%)

Query: 4   LVLEHSSLLALLESCKSLKQ-----ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNG 57
           + ++  S + +L+ C  LKQ     A Q+H  I+ SG+  ++  +++L+  +   G    
Sbjct: 114 IAIDSFSYVNILQRC--LKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCG---R 168

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  +R +F ++   NI+IW T++ GY+     ++A+ +Y  M  +    PN  T+  +L 
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQE-CGQPNEITYLSILK 227

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +C    + K G +IH HII+ G + D+ +  AL++ Y   G I +A  +F+  + R+++S
Sbjct: 228 ACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVIS 287

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +  +I G A       A  LF +MQ     P+++T+V++ +A          K+ H+   
Sbjct: 288 WTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 347

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
            N G +  ++ +  A+++MYAK G ++ A  VF  M   +   +W+ MI G  + G+ + 
Sbjct: 348 -NAG-LALDLRVGNALVHMYAKSGSIDDARVVFDGM-TERDIFSWTVMIGGLAQHGRGQE 404

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC-- 355
           A  LF QM QR+                              G  P+  T +++L A   
Sbjct: 405 AFSLFLQM-QRN------------------------------GCLPNLTTYLSILNASAI 433

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
               AL++ K +H ++ E   F  ++ +  A+I MYAKCGSID A  VF  +    + V 
Sbjct: 434 ASTSALEWVKVVH-KHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCD--RDVI 490

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N+++ GLAQ+G G  +  VF +M+  GL PD  T++++L        +E   +  +  
Sbjct: 491 SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           +  G+          + +  R G +D+A  L   +    +   W A++      R    G
Sbjct: 551 VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSV-RHVTTWNAMIGGAAQQR---CG 606

Query: 536 EIAGQKLLDLE-----PDHGAHYVLLS-NMLAETYRWEEARQVRKLMDDSGI 581
             A    L ++     PD      +LS N+  E   W   ++V     D+G+
Sbjct: 607 REALSLFLQMQREGFIPDATTFINILSANVDEEALEW--VKEVHSHATDAGL 656



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 156/640 (24%), Positives = 294/640 (45%), Gaps = 77/640 (12%)

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
           + ++A+ +    + +GI + ++F++  +L  C +        Q+H  IIK G+E +L++ 
Sbjct: 98  TAKDAVAMLKIRVQQGI-AIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVA 156

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           N L+  Y   G +  A +VF+  L +++  + T+I GYA+      A+ ++ KM+  C Q
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
           P+  T++++  AC    + + GK+ HA + ++     S++ ++TA++NMY KCG +  A+
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQS--GFQSDVRVETALVNMYVKCGSIEDAQ 274

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
            +F  M + ++  +W+ MI G    G+ + A  LF QM QR+                  
Sbjct: 275 LIFDKM-VERNVISWTVMIGGLAHYGRGQEAFHLFLQM-QRE------------------ 314

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
                       G  P+  T V++L A    GAL++ K +H   + N     ++ +  A+
Sbjct: 315 ------------GFIPNSYTYVSILNANASAGALEWVKEVHSHAV-NAGLALDLRVGNAL 361

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           + MYAK GSID A  VF  + +  + +  +  +I GLAQHG G+ + ++F +M+  G  P
Sbjct: 362 VHMYAKSGSIDDARVVFDGMTE--RDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLP 419

Query: 448 DGVTFVTVL--CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           +  T++++L   A +    +E  K   +     G    +     ++ + A+ G +D+A  
Sbjct: 420 NLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARL 479

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-----PDHGAHYVLLSNML 560
           +   M  D + + W A++    L +N   G  A    L ++     PD    Y+ L N  
Sbjct: 480 VFDGMC-DRDVISWNAMMGG--LAQNG-CGHEAFTVFLQMQQEGLVPD-STTYLSLLNTH 534

Query: 561 AETYRWEEARQVRKLMDDSGIQKP--PGWSYIE---HNGTLH--RFLASKKSHPQTKEIE 613
             T   E   +V K   ++G+      G ++I      G++   R L  K S        
Sbjct: 535 GSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWN 594

Query: 614 LMLK------------DMTMKLKSAGYVPNTVQVV----FDVDEEEKETVVSYHSEKLAL 657
            M+              + ++++  G++P+    +     +VDEE  E V   HS   A 
Sbjct: 595 AMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSH--AT 652

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
             GL++ R    +  T +   CG+   A ++  ++  R +
Sbjct: 653 DAGLVDLRVGNALVHTYSK--CGNVKYAKQVFDDMVERNV 690



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 156/329 (47%), Gaps = 8/329 (2%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           ++L+   ++H     +GL      + L+  +  S C N  +  ++ F  +   N+  W  
Sbjct: 639 EALEWVKEVHSHATDAGLVDLRVGNALVHTY--SKCGNVKYAKQV-FDDMVERNVTTWTM 695

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ G ++     +A   +  ML +GIV P+  T+  +L++CA   + +   ++H H +  
Sbjct: 696 MIGGLAQHGCGHDAFSHFLQMLREGIV-PDATTYVSILSACASTGALEWVKEVHNHAVSA 754

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL  DL + NAL+H Y+  G I++A  VF+  + RD+ S+  +I G AQ      AL  F
Sbjct: 755 GLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFF 814

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            KM+    +P+ +++VA+ +AC+       G++    + ++ G +   M   T ++++  
Sbjct: 815 VKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYG-IEPTMEHYTCMVDLLG 873

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ---MDQRDLVSWTA 315
           + GL+  AE     M +    A W +++      G +E A     +   +  +   ++  
Sbjct: 874 RAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 933

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPD 344
           + + Y+  G + Q L +   M+  GI  +
Sbjct: 934 LSNIYAATGKWEQKLLVRSMMQRKGIRKE 962


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/713 (34%), Positives = 390/713 (54%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLLA   +   L++  Q+H  ++ +G++  +I    L+  +  SG    +  +  +F  
Sbjct: 248 ASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSG---DIEEALQIFDS 304

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D  N+ +WN ++  Y + D   ++  ++  ML+ G V PN FT+P +L +C        
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAG-VRPNKFTYPCMLRTCTHTGEIGL 363

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH   IK G + D+++   LI  YS +G+++ A ++ +    +D+VS+ ++I GY Q
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQ 423

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            +    AL  F++MQ   I PD     +  SAC  +     G Q HA VY          
Sbjct: 424 HEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVY---------- 473

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                     G S   + W+ ++  Y R G  + A   F+ ++ 
Sbjct: 474 ------------------------VSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEH 509

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           ++ ++W  +ISG++Q G + +AL++F KM+  G   +  T V+ + A   L  +  GK++
Sbjct: 510 KEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQI 569

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H + I+   +     ++ A+I +Y KCGSI+ A   F+++ K    VS +N+II+  +QH
Sbjct: 570 HARVIKTG-YTSETEISNALISLYGKCGSIEDAKMDFFEMTKR-NEVS-WNTIITCCSQH 626

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G G  ++ +F +M+  GLKP  VTFV VL ACSH GLVEEG  +F+SM N +GI P+ +H
Sbjct: 627 GRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDH 686

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VD+L R G+LD A   ++ MP  A+S++WR LL+AC++H+N +IGE A + LL+LE
Sbjct: 687 YACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELE 746

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A YVLLSN  A T +W    Q+RK+M D G++K PG S+IE    +H F    + H
Sbjct: 747 PHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLH 806

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P   +I   L  +  +L   GY      +  + ++E K+     HSEKLA+AFGL++  S
Sbjct: 807 PLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPS 866

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +R+ KNLR+C DCH   K  S +  REI++RD  RFH F  G+CSC D+W
Sbjct: 867 CMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 244/501 (48%), Gaps = 43/501 (8%)

Query: 26  QIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           +IH + +  GL+ + I  + LI  +A  G    + R+R +F ++   +   W  ++ GY+
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGF---VRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           ++   +EA+ LY  M   G+V P  +    +L++C +   F+ G  IH  + K G   + 
Sbjct: 120 QNGLGEEAVRLYREMHRSGVV-PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ NALI  Y        A +VF   L  D V++NTLI+G+AQ      AL +F +MQ S
Sbjct: 179 FVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLS 238

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            + PD+ T  ++ +AC+ + D R GKQ H+ + K                          
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLK-------------------------- 272

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                    GMS       S++  Y + G IE A Q+FD  D+ ++V W  M+  Y Q+ 
Sbjct: 273 --------AGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQID 324

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
             +++ ++F +M + G+ P++ T   +LR C   G +  G+++H   I+N  F  +++++
Sbjct: 325 DLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN-GFQSDMYVS 383

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
             +IDMY+K G +D A  +   I +  K V  + S+I+G  QH   + ++  F+EM+  G
Sbjct: 384 GVLIDMYSKYGWLDKAQRILDMIEE--KDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           + PD +   + + AC+    V +G Q    +   G    +  +  +V L AR G   EA+
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 505 GLIQSMPYDANSVIWRALLAA 525
              +++ +    + W  L++ 
Sbjct: 502 SSFEAIEHK-EGITWNGLISG 521


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 377/618 (61%), Gaps = 9/618 (1%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFSQI 68
           SL  LL  C+S+++  Q+H  ++  G     S   L S+ AL+   +G L  +R LF  I
Sbjct: 13  SLQKLLRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGI 72

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P+  ++NT++R Y  S  P+EAL L+  ML +GI+ PN FT PFV+ +C    + +  
Sbjct: 73  PGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGIL-PNEFTLPFVVKACTIAQAREHA 131

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H   ++ GL   +F+ NAL+H Y+  G + ++ + F+  + R++VS+N++I GYAQ 
Sbjct: 132 LAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQA 191

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +      LF +M+      D FT V++  AC++  +  IG+  H  +  +   V  +++
Sbjct: 192 GDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRV--DLI 249

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L++A+++MY KCG + MA R F  M + KS  +W+SM+   T+ G +  AR  FD M +R
Sbjct: 250 LESALVDMYGKCGDLWMARRCFEMMPI-KSVVSWTSMLCAQTKHGSVNAARCWFDHMPER 308

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           ++VSW AMIS Y Q G   +AL+L+ +M+S G+ PDE+T+VAVL A   +G L  GK +H
Sbjct: 309 NIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVH 368

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             YI + ++  ++ L  +++DMYAKCG +DTA+S+F ++    + V  +N II GLA HG
Sbjct: 369 L-YIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCN--RNVVSWNVIIGGLAMHG 425

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
               +I  FR M      PDG+TFV +L ACSHGGL+E G+ +FESM + Y +K ++EHY
Sbjct: 426 RALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHY 485

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            CMVDLL R G L++A  LI+ MP   + V+W ALL ACR+H N KIG    ++LL+LE 
Sbjct: 486 ACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEG 545

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
             G  +VL+SN+L ET++WE+ +++RKLM + G +K  G S IE N ++H F      H 
Sbjct: 546 ISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHE 605

Query: 608 QTKEIELMLKDMTMKLKS 625
           ++ EI  ++  ++  L S
Sbjct: 606 RSSEIYAVVDQLSYHLIS 623


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/617 (40%), Positives = 367/617 (59%), Gaps = 51/617 (8%)

Query: 115 VLNS-CARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL---------IHFYSIFGYINNAH 164
           +LNS C  LS      QIH  I+K GL+ +  I             IH+ + F +   +H
Sbjct: 23  LLNSHCNTLSKLT---QIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLF-PPSH 78

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF-RKMQDSCIQPDAFTFVAMFSACTEL 223
                + + D   +NTLI  Y+Q ++     +LF R M    + P+ FTF  +   C  +
Sbjct: 79  TTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGI 138

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
              R+GK  H  V K  G      +L T +I+MY   G                      
Sbjct: 139 GSLRLGKCVHGCVVK-FGFEEDVHVLNT-LIHMYCCLG---------------------- 174

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                   E   E A ++FD   + D V+W+AMI+G+ ++G  S+A++LF +M+ +G+ P
Sbjct: 175 --------EDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCP 226

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           DE+TMV+VL AC  LGAL+ GK + + Y+E     +++ L  A+IDM+AKCG++D A+ +
Sbjct: 227 DEITMVSVLSACADLGALELGKWV-ESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKL 285

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F ++  + +T+  + S+I+GLA HG G  ++++F EM   G+ PD V F+ VL ACSH G
Sbjct: 286 FRQM--DSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSG 343

Query: 464 LVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           LV++G+ +F SM  N+ I P++EHYGCMVDLL R G + EA+  +Q MP++ N +IWR +
Sbjct: 344 LVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTI 403

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           + AC      K+GE   ++L+  EP H ++YVLLSN+ A+  +WE+  +VR++MD  G++
Sbjct: 404 ITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMK 463

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PG + IE N  ++ F+A  KSH Q KEI  M+ +M  ++K AGYVP T QV+ D+DEE
Sbjct: 464 KVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEE 523

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           +KE  +  HSEKLA+AF L+N+    +IRI KNLR+C DCH A K +S++Y REI+VRD 
Sbjct: 524 DKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDR 583

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G CSC DFW
Sbjct: 584 NRFHHFKNGLCSCRDFW 600



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 219/454 (48%), Gaps = 52/454 (11%)

Query: 6   LEHSSLLALLES-CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL-FRSRI 63
           L   ++L LL S C +L +  QIH  I+ +GL ++     L  F + S   N + + +  
Sbjct: 15  LTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNN--PLILTKFTSTSSNLNSIHYATSF 72

Query: 64  LF-----SQIDNP--NIFIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
           LF     +    P  + F++NTL+R YS++ DS   + + Y +ML  G V+PN FTFPFV
Sbjct: 73  LFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYG-VTPNKFTFPFV 131

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY--INNAHKVFEGSLAR 173
           L  CA + S + G  +H  ++KFG E D+ + N LIH Y   G      A KVF+ S   
Sbjct: 132 LKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKM 191

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           D V+++ +I G+ ++     A+ LFR+MQ   + PD  T V++ SAC +L    +GK   
Sbjct: 192 DTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVE 251

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           + V K    +  ++ L  A+I+M+AKCG ++ A ++F  M  S++  +W+S+I+G    G
Sbjct: 252 SYVEKK--NIPKSVELCNALIDMFAKCGNVDKAIKLFRQMD-SRTIVSWTSVIAGLAMHG 308

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
           +   A  LFD+M +                                GI PD+V  + VL 
Sbjct: 309 RGLDAVSLFDEMVEN-------------------------------GITPDDVAFIGVLS 337

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC   G +D G+        N      +     ++D+  + G +  A     K+P     
Sbjct: 338 ACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQ 397

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           + ++ +II+  A H  GE  +      EL+  +P
Sbjct: 398 I-IWRTIIT--ACHATGELKLGESISKELIKSEP 428


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/721 (35%), Positives = 409/721 (56%), Gaps = 52/721 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFR-SRILFS 66
           + +L L  +   L  A  +HG  +  GL   +  S  L++ ++    K G  R +R+LF 
Sbjct: 187 APVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYS----KCGRMRDARLLFD 242

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC--ARLSS 124
            +   ++ +WN +++GY +    +EA  L++     G+  P+ F+   +LN C  A    
Sbjct: 243 WMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGL-RPDEFSVQLILNGCLWAGTDD 301

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G Q+H   +K GL+ D+ + N+L++ YS  G    A +VF      DL+S+N++I+ 
Sbjct: 302 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS 361

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF-----SACTELNDPRIGKQFHAVVYKN 239
            AQ      ++ LF  +    ++PD FT  ++       AC  L     GKQ HA   K 
Sbjct: 362 CAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK- 420

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                S++ + + +++MY KCG M  A  VF+ +                          
Sbjct: 421 -AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP----------------------- 456

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                    D V+WT+MISG    G   QAL ++ +M    + PDE T   +++A   + 
Sbjct: 457 ---------DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVT 507

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL+ G++LH   I+ +    + F+ T+++DMYAKCG+I+ A  +F K+  N++ ++L+N+
Sbjct: 508 ALEQGRQLHANVIK-LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM--NVRNIALWNA 564

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           ++ GLAQHG  E ++ +F+ M+  G++PD V+F+ +L ACSH GL  E  ++  SM N Y
Sbjct: 565 MLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDY 624

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI+P++EHY C+VD L R G + EA  +I++MP+ A++ I RALL ACR+  + + G+  
Sbjct: 625 GIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRV 684

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
             +L  LEP   A YVLLSN+ A   RW++    RK+M    ++K PG+S+I+    LH 
Sbjct: 685 AARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHL 744

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F+   +SHPQ   I   +++M   ++  GYVP+T  V+ DV++EEKE  + YHSEKLA+A
Sbjct: 745 FVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIA 804

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           +GLI++ +  TIR+ KNLR+CGDCH A K +S+++ REI++RDA RFH F+ G CSC D+
Sbjct: 805 YGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDY 864

Query: 719 W 719
           W
Sbjct: 865 W 865



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 154/586 (26%), Positives = 265/586 (45%), Gaps = 66/586 (11%)

Query: 28  HGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
           H +IV SG    H  S+ L++ ++  G    L  +R +F      ++  WN ++  Y+ S
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCG---SLSSARQVFDTTPERDLVTWNAILGAYAAS 156

Query: 87  -DS----PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
            DS     QE L L+  +L   + S    T   VL  C       +   +H + IK GLE
Sbjct: 157 VDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 215

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
           +D+F+  AL++ YS  G + +A  +F+    RD+V +N ++ GY Q+     A  LF + 
Sbjct: 216 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 202 QDSCIQPDAFTFVAMFSAC--TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
             S ++PD F+   + + C     +D  +GKQ H +  K+   + S++ +  +++NMY+K
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKS--GLDSDVSVANSLVNMYSK 333

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
            G    A  V                                F+ M   DL+SW +MIS 
Sbjct: 334 MGCAYFAREV--------------------------------FNDMKHLDLISWNSMISS 361

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVL-----RACVGLGALDFGKRLHQQYIEN 374
            +Q     +++ LF  +   G+ PD  T+ ++      +AC  L  LD GK++H   I+ 
Sbjct: 362 CAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK- 420

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI--PKNLKTVSLFNSIISGLAQHGLGET 432
             F  ++ + + ++DMY KCG +  A  VF  I  P ++     + S+ISG   +G  + 
Sbjct: 421 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA----WTSMISGCVDNGNEDQ 476

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           ++ ++  M    + PD  TF T++ A S    +E+G+Q   +++             +VD
Sbjct: 477 ALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVD 536

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHG 550
           + A+ G +++AY L + M    N  +W A+L     H NA+  +      K   +EPD  
Sbjct: 537 MYAKCGNIEDAYRLFKKMNV-RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRV 595

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           +   +LS         E    +  + +D GI+       IEH   L
Sbjct: 596 SFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPE-----IEHYSCL 636


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/739 (33%), Positives = 402/739 (54%), Gaps = 80/739 (10%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           KS  QA Q+H Q + +    H S+S +IS +        L  + +LF  + +P +  W +
Sbjct: 19  KSKSQAKQLHAQFIRTQSLSHTSASIVISIYT---NLKLLHEALLLFKTLKSPPVLAWKS 75

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++R ++      +AL  +  M + G   P++  FP VL SC  +   + G  +H  I++ 
Sbjct: 76  VIRCFTDQSLFSKALASFVEMRASG-RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 139 GLEFDLFIRNALIHFYS-------------------------------------IFGYIN 161
           G++ DL+  NAL++ Y+                                      FG I+
Sbjct: 135 GMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG-ID 193

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +  +VFE    +D+VSYNT+I GYAQ      AL + R+M  + ++PD+FT  ++    +
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           E  D   GK+ H  V +    + S++ + +++++MYAK                      
Sbjct: 254 EYVDVIKGKEIHGYVIRK--GIDSDVYIGSSLVDMYAK---------------------- 289

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
                       +IE + ++F ++  RD +SW ++++GY Q G +++AL LF +M +  +
Sbjct: 290 ----------SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P  V   +V+ AC  L  L  GK+LH  Y+    FG NIF+ +A++DMY+KCG+I  A 
Sbjct: 340 KPGAVAFSSVIPACAHLATLHLGKQLHG-YVLRGGFGSNIFIASALVDMYSKCGNIKAAR 398

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            +F ++  N+     + +II G A HG G  ++++F EM+  G+KP+ V FV VL ACSH
Sbjct: 399 KIFDRM--NVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 456

Query: 462 GGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            GLV+E   +F SM   YG+  ++EHY  + DLL R G+L+EAY  I  M  +    +W 
Sbjct: 457 VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWS 516

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            LL++C +H+N ++ E   +K+  ++ ++   YVL+ NM A   RW+E  ++R  M   G
Sbjct: 517 TLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKG 576

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           ++K P  S+IE     H F++  +SHP   +I   LK +  +++  GYV +T  V+ DVD
Sbjct: 577 LRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVD 636

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EE K  ++  HSE+LA+AFG+IN+    TIR+TKN+RIC DCH+A K +S+I  REI+VR
Sbjct: 637 EEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVR 696

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH F +GNCSC D+W
Sbjct: 697 DNSRFHHFNRGNCSCGDYW 715


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/599 (39%), Positives = 364/599 (60%), Gaps = 49/599 (8%)

Query: 130 QIHCHIIKFGLEFD--LFIRNALIHF--YSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           Q+H HI+   L      F  + ++ F   S FG IN A  VF      ++ S+N+LI GY
Sbjct: 6   QLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGY 65

Query: 186 AQV----KEPCPALWLFRKMQDSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +Q+    KEP   ++LF+K+ ++    P++FT   +  AC  +     G Q H+ V K+ 
Sbjct: 66  SQIHTLSKEP---IFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKD- 121

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              GS++ ++T+++N Y KC                                 +I  AR+
Sbjct: 122 -GFGSSLFVQTSLVNFYGKCE--------------------------------EIGFARK 148

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +F++M  R+LV+WTAMISG+++VG   +A+ELF +M+  GI PD +T+V+V+ AC   GA
Sbjct: 149 VFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGA 208

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G  LH  YIE      ++ L+TA++DMYAKCG I+ A  VF  +P  +K  + ++S+
Sbjct: 209 LDIGYWLHA-YIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP--VKDTTAWSSM 265

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           I G A HGL + +I  F++M    + PD VTF+ VL AC+HGGLV  G++F+  ML +GI
Sbjct: 266 IMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGI 325

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P +EHYGC VDLL R G ++EAY +  +M    N+  WR+LL  C+  +   +GEI  +
Sbjct: 326 EPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVAR 385

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            LL+LEP +  +Y+++SN+ +   +WE+  ++RK+M +  I+  PG S IE +G +H F+
Sbjct: 386 YLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFV 445

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              +SHP+ K +   +++M+M+++ +GY P+   V+  V +EEKE  +S HSE+ A+A+G
Sbjct: 446 MGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYG 505

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+ +R+   IR+ KNLR+C DCH   K++S++Y REI+VRD +RFH F KG CSC DFW
Sbjct: 506 LLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/427 (32%), Positives = 221/427 (51%), Gaps = 52/427 (12%)

Query: 26  QIHGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
           Q+H  I+   L   +   + S++++F ALS   N +  +R +F+QI +PNIF WN+L++G
Sbjct: 6   QLHAHILTRPLPLSSFAFALSKIVAFCALSPFGN-INYARSVFAQIPHPNIFSWNSLIKG 64

Query: 83  YSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           YS+  +  +E + L+  +   G   PN+FT  FVL +CA +++F  G Q+H H++K G  
Sbjct: 65  YSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFG 124

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
             LF++ +L++FY     I  A KVFE    R+LV++  +I+G+A+V     A+ LFR+M
Sbjct: 125 SSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREM 184

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           Q + IQPDA T V++ SAC       IG   HA + K    V +++ L TA+++MYAKCG
Sbjct: 185 QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYF--VLTDLELSTALVDMYAKCG 242

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            +  A++VF  M + K T AWSSMI G+   G  + A   F QM + +            
Sbjct: 243 CIERAKQVFVHMPV-KDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE------------ 289

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG--R 379
                              + PD VT +AVL AC   G +  G+R     +E   FG   
Sbjct: 290 -------------------VTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLE---FGIEP 327

Query: 380 NIFLTTAVIDMYAKCGSIDTA--LSVFYKIPKNLKTVSLFNSIISGLAQH---GLGETSI 434
           ++      +D+  + G ++ A  ++   KIP N  T   + S++ G  +     LGE   
Sbjct: 328 SVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAAT---WRSLLMGCKKKKLLNLGEIVA 384

Query: 435 AVFREME 441
               E+E
Sbjct: 385 RYLLELE 391



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 171/351 (48%), Gaps = 33/351 (9%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           +L  +L++C    +  + LQ+H  ++  G    +   + L++F+    C+   F +R +F
Sbjct: 94  TLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYG--KCEEIGF-ARKVF 150

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   N+  W  ++ G++R  +  EA+ L+  M   GI  P+  T   V+++CA   + 
Sbjct: 151 EEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGI-QPDAMTLVSVVSACAVAGAL 209

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  +H +I K+ +  DL +  AL+  Y+  G I  A +VF     +D  +++++I G+
Sbjct: 210 DIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGF 269

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV--------Y 237
           A       A+  F++M ++ + PD  TF+A+ SAC        G++F +++         
Sbjct: 270 AYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSV 329

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE----- 292
           ++ GC           +++  + GL+  A R+ +TM +  + A W S++ G  ++     
Sbjct: 330 EHYGCK----------VDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNL 379

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           G+I  AR L  +++  +  ++  + + YS +  + +  EL   M+   I P
Sbjct: 380 GEI-VARYLL-ELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKP 428


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/742 (33%), Positives = 410/742 (55%), Gaps = 73/742 (9%)

Query: 10   SLLALLESCKSLKQAL----QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
            +L+++  +C  ++  +    Q+H   + +G     +++ L++ +A  G  N    ++ LF
Sbjct: 435  TLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVND---AKALF 491

Query: 66   SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
               D  ++  WNT++   S++D  +EAL+    M+  G V P+  T   VL +C++L   
Sbjct: 492  GVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG-VRPDGVTLASVLPACSQLERL 550

Query: 126  KSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G +IHC+ ++ G L  + F+  AL+  Y           VF+G + R +  +N L+ G
Sbjct: 551  RIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAG 610

Query: 185  YAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YA+ +    AL LF +M  +S   P+A TF ++  AC         +  H  + K     
Sbjct: 611  YARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKR---- 666

Query: 244  GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                                          G  K     ++++  Y+R G++E ++ +F 
Sbjct: 667  ------------------------------GFGKDKYVQNALMDMYSRMGRVEISKTIFG 696

Query: 304  QMDQRDLVSWTAMISGYSQVGGFSQALELFGKME------------------SLGIHPDE 345
            +M++RD+VSW  MI+G    G +  AL L  +M+                   +   P+ 
Sbjct: 697  RMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNS 756

Query: 346  VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            VT++ VL  C  L AL  GK +H  Y        ++ + +A++DMYAKCG ++ A  VF 
Sbjct: 757  VTLMTVLPGCAALAALGKGKEIHA-YAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFD 815

Query: 406  KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG------LKPDGVTFVTVLCAC 459
            ++P  ++ V  +N +I     HG GE ++ +FR M   G      ++P+ VT++ +  AC
Sbjct: 816  QMP--IRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAAC 873

Query: 460  SHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV- 517
            SH G+V+EG   F +M  ++G++P+ +HY C+VDLL R GR+ EAY LI +MP + N V 
Sbjct: 874  SHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVD 933

Query: 518  IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
             W +LL ACR+H++ + GEIA + L  LEP+  +HYVL+SN+ +    W++A  VRK M 
Sbjct: 934  AWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMK 993

Query: 578  DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
            + G++K PG S+IEH   +H+FL+   SHPQ+KE+   L+ ++ +++  GYVP+   V+ 
Sbjct: 994  EMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLH 1053

Query: 638  DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
            +VD+EEKET++  HSE+LA+AFGL+N+    TIR+ KNLR+C DCH+A K++S+I  REI
Sbjct: 1054 NVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREI 1113

Query: 698  MVRDAIRFHLFKKGNCSCMDFW 719
            ++RD  RFH F  G CSC D+W
Sbjct: 1114 ILRDVRRFHHFANGTCSCGDYW 1135



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 223/494 (45%), Gaps = 55/494 (11%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W  L+R  + S S ++A+  Y +ML+      +NF FP VL + A +     G QIH H+
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPP-DNFAFPAVLKAAAAVHDLCLGKQIHAHV 356

Query: 136 IKFG--LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            KFG      + + N+L++ Y   G +  A +VF+    RD VS+N++I    + +E   
Sbjct: 357 FKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWEL 416

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTA 252
           +L LFR M    + P +FT V++  AC+ +    R+GKQ HA   +N            A
Sbjct: 417 SLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL---RTYTNNA 473

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++ MYA+ G +N A+ +F                     +GK              DLVS
Sbjct: 474 LVTMYARLGRVNDAKALFGVF------------------DGK--------------DLVS 501

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W  +IS  SQ   F +AL     M   G+ PD VT+ +VL AC  L  L  G+ +H   +
Sbjct: 502 WNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYAL 561

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
            N     N F+ TA++DMY  C        VF  + +  +TV+++N++++G A++   + 
Sbjct: 562 RNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVR--RTVAVWNALLAGYARNEFDDQ 619

Query: 433 SIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
           ++ +F EM       P+  TF +VL AC    +  + +     ++  G          ++
Sbjct: 620 ALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALM 679

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC-----------RLHR-NAKIGEIAG 539
           D+ +R GR++ +  +   M    + V W  ++  C            LH    + GE   
Sbjct: 680 DMYSRMGRVEISKTIFGRM-NKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGS 738

Query: 540 QKLLDLEPDHGAHY 553
              +D E D G  +
Sbjct: 739 DTFVDYEDDGGVPF 752



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 240/524 (45%), Gaps = 59/524 (11%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           QIH  +   G     S +   S   + G    L  +R +F  I + +   WN+++    R
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL-SSFKSGCQIHCHIIKFGLEFDL 144
            +  + +L L+  MLS+  V P +FT   V ++C+ +    + G Q+H + ++ G +   
Sbjct: 411 FEEWELSLHLFRLMLSEN-VDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRT 468

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           +  NAL+  Y+  G +N+A  +F     +DLVS+NT+I+  +Q      AL     M   
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            ++PD  T  ++  AC++L   RIG++ H    +N G +  N  + TA+++MY  C    
Sbjct: 529 GVRPDGVTLASVLPACSQLERLRIGREIHCYALRN-GDLIENSFVGTALVDMYCNCKQPK 587

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
               VF  + + ++ A W+++++GY        AR  FD                     
Sbjct: 588 KGRLVFDGV-VRRTVAVWNALLAGY--------ARNEFDD-------------------- 618

Query: 325 GFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
              QAL LF +M S     P+  T  +VL ACV        + +H  YI    FG++ ++
Sbjct: 619 ---QALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIH-GYIVKRGFGKDKYV 674

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL- 442
             A++DMY++ G ++ + ++F ++  N + +  +N++I+G    G  + ++ +  EM+  
Sbjct: 675 QNALMDMYSRMGRVEISKTIFGRM--NKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRR 732

Query: 443 -----------------MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
                            +  KP+ VT +TVL  C+    + +GK+     +   +   + 
Sbjct: 733 QGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVA 792

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
               +VD+ A+ G L+ A  +   MP   N + W  L+ A  +H
Sbjct: 793 VGSALVDMYAKCGCLNLASRVFDQMPI-RNVITWNVLIMAYGMH 835



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 15/209 (7%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +++R    W  ++   +    F  A+  +  M +    PD     AVL+A   +  L  G
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 365 KRLHQQYIENVVFGR----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           K++H    +   FG     ++ +  ++++MY KCG +  A  VF  IP +   VS +NS+
Sbjct: 350 KQIHAHVFK---FGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIP-DRDHVS-WNSM 404

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH-GGLVEEGKQFFESMLNYG 479
           I+ L +    E S+ +FR M    + P   T V+V  ACSH  G V  GKQ     L  G
Sbjct: 405 IATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG 464

Query: 480 IKPQMEHY--GCMVDLLARDGRLDEAYGL 506
               +  Y    +V + AR GR+++A  L
Sbjct: 465 ---DLRTYTNNALVTMYARLGRVNDAKAL 490


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/617 (39%), Positives = 356/617 (57%), Gaps = 47/617 (7%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V P+  +F  +L SCA     + G   HC I+K G E+D+ ++                 
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTG--------------- 50

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
                           L++ YA+V +   A  +F  M     + D     AM SA ++  
Sbjct: 51  ----------------LLDFYAKVGDLKCAKRVFMGMP----RRDVVANNAMISALSKHG 90

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
                +     + +   C  ++M      I  Y K G +N A  +F    + K   +W++
Sbjct: 91  YVEEARNLFDNMTERNSCSWNSM------ITCYCKLGDINSARLMFDCNPV-KDVVSWNA 143

Query: 285 MISGYTREGKIERARQLFDQM-DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           +I GY +  ++  A++LF  M   R+ V+W  MIS Y Q G F  A+ +F +M+S  + P
Sbjct: 144 IIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKP 203

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
            EVTMV++L AC  LGALD G+ +H  YI       ++ L  A+IDMY KCG+++ A+ V
Sbjct: 204 TEVTMVSLLSACAHLGALDMGEWIHG-YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDV 262

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F+ + +  K +  +NSII GL  +G GE +IA F  ME  G+KPDGVTFV +L  CSH G
Sbjct: 263 FHGLSR--KNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSG 320

Query: 464 LVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           L+  G+++F  ML  YG++P +EHYGCMVDLL R G L EA  LI++MP   NS++  +L
Sbjct: 321 LLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSL 380

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L AC++H++ K+GE   Q+LL+L+P  G +YV LSN+ A   RW++    RKLM   G+ 
Sbjct: 381 LRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVH 440

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PG S IE N  +H F+A   SHPQ  +I   L ++  +LK  G+VPNT  V+ D++EE
Sbjct: 441 KTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEE 500

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           EKE  + YHSE++A+AFGL+++   +TIR+ KNLR C DCH A KL+S  ++REI+VRD 
Sbjct: 501 EKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDR 560

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH F+ G+CSC D+W
Sbjct: 561 KRFHHFRNGSCSCNDYW 577



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 143/365 (39%), Gaps = 78/365 (21%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N   WNT++  Y +      A+ ++  M S+  V P   T   +L++CA L +   G  I
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSEN-VKPTEVTMVSLLSACAHLGALDMGEWI 227

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H +I    L+ D+ + NALI  Y   G +  A  VF G   +++  +N++I G       
Sbjct: 228 HGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRG 287

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             A+  F  M+   I+PD  TFV + S C+                              
Sbjct: 288 EEAIAAFIVMEKEGIKPDGVTFVGILSGCSH----------------------------- 318

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
                    GL++  +R F            S M+  Y  E  +E               
Sbjct: 319 --------SGLLSAGQRYF------------SEMLGVYGLEPGVEH-------------- 344

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
            +  M+    + G   +ALEL   + ++ + P+ + + ++LRAC        G+++ QQ 
Sbjct: 345 -YGCMVDLLGRAGYLKEALEL---IRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQL 400

Query: 372 IE-------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP--KNLKTVSLFNSIIS 422
           +E       N VF  N++ + +  D    C  +     V +K P   +++  ++ +  ++
Sbjct: 401 LELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGV-HKTPGCSSIEVNNIVHEFVA 459

Query: 423 GLAQH 427
           G   H
Sbjct: 460 GDTSH 464



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 113/289 (39%), Gaps = 45/289 (15%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI-L 64
           ++++LL +C    +L     IHG I    L   +   + LI  +    CK G   + I +
Sbjct: 207 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMY----CKCGALEAAIDV 262

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +   NIF WN+++ G   +   +EA+  +  M  +GI  P+  TF  +L+ C+    
Sbjct: 263 FHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI-KPDGVTFVGILSGCSHSGL 321

Query: 125 FKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +G +    ++  +GLE  +     ++      GY+                       
Sbjct: 322 LSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKE--------------------- 360

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
                     AL L R M    ++P++    ++  AC    D ++G+Q    + +   C 
Sbjct: 361 ----------ALELIRAMP---MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 407

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           G N +  + +    ++   +N   ++    G+ K+    S  ++    E
Sbjct: 408 GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHE 456


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/621 (39%), Positives = 368/621 (59%), Gaps = 42/621 (6%)

Query: 103 GIVSPNNFT---FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           G VSP+ F    +   L  C +      G  +HC I+K G   DLF  N L++ Y    +
Sbjct: 29  GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDF 88

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           + +A K+F+    R+ +S+ TLI GYA+      A+ LF ++    + P+ FTF ++  A
Sbjct: 89  LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVL-PNQFTFASVLQA 147

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C  +    +G Q H  V K +G + S++ +  A++++YAKCG                  
Sbjct: 148 CATMEGLNLGNQIHCHVIK-IG-LHSDVFVSNALMDVYAKCG------------------ 187

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
                         ++E + +LF +   R+ V+W  +I G+ Q+G   +AL LF  M   
Sbjct: 188 --------------RMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEY 233

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
            +   EVT  + LRAC  L AL+ G ++H   ++   F ++I +T A+IDMYAKCGSI  
Sbjct: 234 RVQATEVTYSSALRACASLAALEPGLQIHSLTVKTT-FDKDIVVTNALIDMYAKCGSIKD 292

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A  VF  + K    VS +N++ISG + HGLG  ++ +F +M+   +KPD +TFV VL AC
Sbjct: 293 ARLVFDLMNKQ-DEVS-WNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSAC 350

Query: 460 SHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           ++ GL+++G+ +F SM+ ++GI+P +EHY CMV LL R G LD+A  LI  +P+  + ++
Sbjct: 351 ANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMV 410

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           WRALL AC +H + ++G I+ Q++L++EP   A +VLLSNM A   RW+    VRK M  
Sbjct: 411 WRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKR 470

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G++K PG S+IE  GT+H F     SHP+ + I  ML+ + MK K AGY+PN   V+ D
Sbjct: 471 KGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLD 530

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           V++EEKE ++  HSE+LAL+FG+I + S   IRI KNLRIC DCH A K +S++ +REI+
Sbjct: 531 VEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIV 590

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD  RFH F++G CSC D+W
Sbjct: 591 VRDINRFHHFQEGLCSCGDYW 611



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 183/381 (48%), Gaps = 40/381 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   N   + TL++GY+ S    EA+ L+  +  +  V PN FTF  VL +CA + 
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE--VLPNQFTFASVLQACATME 152

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G QIHCH+IK GL  D+F+ NAL+  Y+  G + N+ ++F  S  R+ V++NT+I 
Sbjct: 153 GLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIV 212

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+ Q+ +   AL LF  M +  +Q    T+ +   AC  L     G Q H++  K     
Sbjct: 213 GHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKT--TF 270

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++++  A+I+MYAKCG +  A  VF  M   +   +W++MISGY+  G    A ++FD
Sbjct: 271 DKDIVVTNALIDMYAKCGSIKDARLVFDLMN-KQDEVSWNAMISGYSMHGLGREALRIFD 329

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                                          KM+   + PD++T V VL AC   G LD 
Sbjct: 330 -------------------------------KMQETEVKPDKLTFVGVLSACANAGLLDQ 358

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+      I++      I   T ++ +  + G +D A+ +  +IP    +V ++ +++  
Sbjct: 359 GQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQ-PSVMVWRALLGA 417

Query: 424 LAQHG---LGETSIAVFREME 441
              H    LG  S     EME
Sbjct: 418 CVIHNDIELGRISAQRVLEME 438



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           +SS L    S  +L+  LQIH   V +  +  I  ++ LI  +A  G    +  +R++F 
Sbjct: 242 YSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCG---SIKDARLVFD 298

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            ++  +   WN ++ GYS     +EAL ++  M  +  V P+  TF  VL++CA      
Sbjct: 299 LMNKQDEVSWNAMISGYSMHGLGREALRIFDKM-QETEVKPDKLTFVGVLSACANAGLLD 357

Query: 127 SG 128
            G
Sbjct: 358 QG 359


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/719 (33%), Positives = 419/719 (58%), Gaps = 54/719 (7%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           +L ++L  C SL   +    IHG +V +G   ++   + L+  +A   C   +  +  LF
Sbjct: 164 TLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKC---VSEAEFLF 220

Query: 66  S--QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
              + D  N  +W  ++ GY+++    +A+  +  M ++G V  N +TFP +L +C+ + 
Sbjct: 221 KGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQG-VECNQYTFPTILTACSSVL 279

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G Q+H  I+K G   ++++++AL+  Y+  G + NA  + E     D+VS+N+L+ 
Sbjct: 280 ARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMV 339

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN-DPRIGKQFHAVVYKNLGC 242
           G+ +      AL LF+ M    ++ D +TF ++ + C   + +P   K  H ++ K    
Sbjct: 340 GFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINP---KSVHGLIIKT--G 394

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             +  L+  A+++MYAK G M+ A                      YT          +F
Sbjct: 395 FENYKLVSNALVDMYAKTGDMDCA----------------------YT----------VF 422

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++M ++D++SWT++++GY+Q     ++L++F  M   G++PD+  + ++L AC  L  L+
Sbjct: 423 EKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLE 482

Query: 363 FGKRLHQQYIEN-VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           FGK++H  +I++ + + ++++   +++ MYAKCG +D A ++F  +   +K V  + +II
Sbjct: 483 FGKQVHLDFIKSGLRWSQSVY--NSLVAMYAKCGCLDDADAIF--VSMQVKDVITWTAII 538

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
            G AQ+G G  S+  +  M   G +PD +TF+ +L ACSH GLV+EG+++F+ M   YGI
Sbjct: 539 VGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGI 598

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           KP  EHY CM+DL  R G+LDEA  L+  M    ++ +W++LL+ACR+H N ++ E A  
Sbjct: 599 KPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAAT 658

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            L +LEP +   YV+LSNM + + +W +  ++RKLM   GI K PG S++E N  ++ F+
Sbjct: 659 NLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFI 718

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           +  + HP+  EI   + ++ +++K AGYVP+    + D+D+E KE  ++YHSEKLA+AFG
Sbjct: 719 SDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFG 778

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+ +     IRI KNLR+CGDCH A K +S ++ R I++RD+  FH F++G CSC D+W
Sbjct: 779 LLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 189/388 (48%), Gaps = 48/388 (12%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D +  N +I  Y   G +  A ++F+G   +  ++++++I+GY +      A  LFR M+
Sbjct: 95  DEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMR 154

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
               +   FT  ++   C+ L   + G+  H  V KN G  G N+ + T +++MYAKC  
Sbjct: 155 LEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKN-GFEG-NVFVVTGLVDMYAKCKC 212

Query: 263 MNMAERVFSTMGMS-KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
           ++ AE +F  +    K+   W++M++GY + G                         GY 
Sbjct: 213 VSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG------------------------DGY- 247

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
                 +A+E F  M + G+  ++ T   +L AC  + A  FG+++H  +I    FG N+
Sbjct: 248 ------KAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVH-GFIVKSGFGSNV 300

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++ +A++DMYAKCG +  A ++   +  +   V  +NS++ G  +HGL E ++ +F+ M 
Sbjct: 301 YVQSALVDMYAKCGDLKNAKNMLETMEDD--DVVSWNSLMVGFVRHGLEEEALRLFKNMH 358

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY----GCMVDLLARD 497
              +K D  TF +VL  C  G +        +S+    IK   E+Y      +VD+ A+ 
Sbjct: 359 GRNMKIDDYTFPSVLNCCVVGSINP------KSVHGLIIKTGFENYKLVSNALVDMYAKT 412

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G +D AY + + M  + + + W +L+  
Sbjct: 413 GDMDCAYTVFEKM-LEKDVISWTSLVTG 439



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 169/342 (49%), Gaps = 33/342 (9%)

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++N  +K G +N A ++F  M   K   +W++MIS Y   G++  AR+LFD    +  ++
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMP-QKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSIT 129

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W+++ISGY + G   +A +LF  M   G    + T+ +VLR C  LG +  G+ +H   +
Sbjct: 130 WSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVV 189

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +N  F  N+F+ T ++DMYAKC  +  A  +F  +  + K   L+ ++++G AQ+G G  
Sbjct: 190 KN-GFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           ++  FR M   G++ +  TF T+L ACS       G+Q    ++  G    +     +VD
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVD 308

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH---------------RNAKIGEI 537
           + A+ G L  A  ++++M  D + V W +L+     H               RN KI + 
Sbjct: 309 MYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDY 367

Query: 538 AGQKLLD------LEPD--HG-------AHYVLLSNMLAETY 564
               +L+      + P   HG        +Y L+SN L + Y
Sbjct: 368 TFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMY 409


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/667 (36%), Positives = 394/667 (59%), Gaps = 14/667 (2%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L R+  LF +I  P++  W  L+ G+++   P++A+ +Y+++LS+  V P+ F    V  
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRN-VRPDKFVLLSVAK 85

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +CA         +IH   I+FG   DL + NALI  +    ++N A  VF+  + +D+VS
Sbjct: 86  ACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVS 145

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           + ++   Y         + LFR+M  + I+ ++ T  ++  AC +    ++G++ H  + 
Sbjct: 146 WTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFIL 203

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           +N   +  N+ + +A++NMYA    +  A  VF +M   +   +W+ M++ Y    + ER
Sbjct: 204 RNE--MEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLNKEYER 260

Query: 298 ARQLFDQMDQRDL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
              LF QM +  +     SW A ISG  Q G    AL +  KM+  GI P+ +T+V+ L 
Sbjct: 261 GLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALP 320

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
            C  L +L  GK +H  Y+    F  ++ +TTA++ +YAKCG ++ +  VF  +P+  K 
Sbjct: 321 GCTNLESLRGGKEIHG-YVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPR--KD 377

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  +N++I   + HG G  S+ +F +M   G++P+ VTF+ VL  CSH  L +EG   F 
Sbjct: 378 VVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFN 437

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM + + I P  +HY CMVD+L+R GRL+EAY  I+ MP +  +  W ALL ACR+++N 
Sbjct: 438 SMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNV 497

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G +A  +L ++EPD+  +YVLLSN+L    +W EA ++RK+M D G+ K PG S+++ 
Sbjct: 498 ELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQV 557

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              ++ F+   KS+ Q   I   L ++  K++  GY PNT  V+ +VD+E++E  +  HS
Sbjct: 558 KNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHS 617

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LA+AFG++NS  K T+R+ KNLRICGDCH A KL+++I   +I+VRD++RFH F+ G 
Sbjct: 618 ERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGY 677

Query: 713 CSCMDFW 719
           C+C DFW
Sbjct: 678 CTCNDFW 684



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 6/251 (2%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I      G ++RA  LFD++ + DL +WT +ISG++Q G   +A++++  + S  + PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           +  +++V +AC   G L   K++H   I+   F +++ L  A+IDM+ KC  ++ A  VF
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQ-FGFNKDLVLGNALIDMFGKCKFVNGARCVF 135

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +   +K V  + S+       G+    I +FREM L G++ + +T  ++L AC+    
Sbjct: 136 DDMV--VKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD--Y 191

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++ G++    +L   ++  +     +V++ A    L +A  +  SM Y  + V W  +L 
Sbjct: 192 IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLT 250

Query: 525 ACRLHRNAKIG 535
           A  L++  + G
Sbjct: 251 AYFLNKEYERG 261



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 183/429 (42%), Gaps = 79/429 (18%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G +  A  +F+     DL ++  LI+G+ Q   P  A+ ++  +    ++PD F  +++ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 218 SACTELNDPRIGKQFH--AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
            AC    D  + K+ H  A+ +        +++L  A+I+M+ KC  +N A  VF  M +
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFG----FNKDLVLGNALIDMFGKCKFVNGARCVFDDM-V 139

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            K   +W+SM   Y                                  G   Q + LF +
Sbjct: 140 VKDVVSWTSMTYCYV-------------------------------NCGMCRQGILLFRE 168

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M   GI  + +T+ ++L AC     +  G+ +H   + N + G N+++++A+++MYA   
Sbjct: 169 MGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEG-NVYVSSALVNMYASSL 225

Query: 396 SIDTA-------------------------------LSVFYKIPK---NLKTVSLFNSII 421
            +  A                               L +F+++ K    L   S +N+ I
Sbjct: 226 GLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQAS-WNAAI 284

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           SG  Q+G  E ++ +  +M+  G+KP+ +T V+ L  C++   +  GK+    +  +   
Sbjct: 285 SGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFI 344

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
             +     +V L A+ G L+ +  +  +MP   + V W  ++ A  +H       I   K
Sbjct: 345 EDVTITTALVLLYAKCGDLELSRHVFNTMPR-KDVVAWNTMIMANSMHGKGGESLILFNK 403

Query: 542 LLD--LEPD 548
           +LD  +EP+
Sbjct: 404 MLDSGVEPN 412



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 39/245 (15%)

Query: 13  ALLESCKS-LKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++L +C   +K   ++HG I+ + +  ++  SS L++ +A S    GL ++R++F  + +
Sbjct: 183 SILPACADYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSL---GLKQARLVFDSMYH 239

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-------------------------- 104
            +I  WN ++  Y  +   +  L L+  M  +GI                          
Sbjct: 240 RDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGI 299

Query: 105 --------VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
                   + PN  T    L  C  L S + G +IH ++ +     D+ I  AL+  Y+ 
Sbjct: 300 LCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAK 359

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +  +  VF     +D+V++NT+I   +   +   +L LF KM DS ++P++ TF+ +
Sbjct: 360 CGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGV 419

Query: 217 FSACT 221
            S C+
Sbjct: 420 LSGCS 424


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 366/638 (57%), Gaps = 41/638 (6%)

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           +SR  SP  AL ++ ++       P++ TF   L++CARL   + G  +       G + 
Sbjct: 84  HSRRGSPASALRVFRAL--PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+F+ ++L+H Y+ +G + +A KVF     RD V+++T++ G+    +P  A+ ++R+M+
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +  ++ D    + +  ACT   + R+G   H  + ++                       
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRH----------------------- 238

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                      GM       +S++  Y + G ++ A ++F  M  R+ VSW+AMISG++Q
Sbjct: 239 -----------GMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQ 287

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G   +AL LF  M++ GI PD   +V+ L AC  +G L  G+ +H   +    F  N  
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF--NCI 345

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L TA IDMY+KCGS+ +A  +F  I    + + L+N++I+    HG G+ ++ +F+EM  
Sbjct: 346 LGTAAIDMYSKCGSLASAQMLFNMISD--RDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G++PD  TF ++L A SH GLVEEGK +F  M+N + I P  +HY C+VDLLAR G ++
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA  L+ SM  +    IW ALL+ C  ++  ++GE     +L+L+PD      L+SN+ A
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            T +W++ RQVRKLM DSG +K PG S IE  GT H F+   +SHPQ +EI   +  + +
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDL 583

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           +++  GY+P T  V  D++EE KE  +SYHSE+LA+AFGL+N+     + I KNLR+CGD
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A K +S+I  REI+VRDA RFH FK G CSC D+W
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +  +LN C    + + G ++H H+IK      +++   LI  Y+    +  A  VF+   
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R++VS+  +I+GY+Q      AL LF +M  S  +P+ FTF  + S+CT  +   +G+Q
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H+ ++K                         N    +F            SS++  Y +
Sbjct: 133 IHSHIFKR------------------------NYENHIF----------VGSSLLDMYAK 158

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+I  AR +F+ + +RD+VS TA+ISGY+Q+G   +ALELF +++  G+  + VT  ++
Sbjct: 159 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASL 218

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L A  GL ALD GK++H  ++        + L  ++IDMY+KCG+++ A  +F  +P  +
Sbjct: 219 LTALSGLAALDHGKQVHS-HVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMP--V 275

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           +TV  +N+++ G ++HG G   + +F+ M E   +KPD VTF+ VL  CSHGGL ++G +
Sbjct: 276 RTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLE 335

Query: 471 FFESMLNYG--IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            F+ M+N G  I+  +EHYGC++DLL R GR++EA+ LI+ MP++  + IW +LL ACR+
Sbjct: 336 MFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRV 395

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H N  IGE  G +LL++EP++  +YV+LSN+ A   RWE+ R VR+LM +  + K PG S
Sbjct: 396 HSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRS 455

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           +IE + T+H F AS +SHP+ +E+ L ++++ +K K +GYVP+   V++DVDEE+KE ++
Sbjct: 456 WIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKIL 515

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLALAFGLI++     +R+ KNLRIC DCH   K +S++Y R++ +RD  RFH  
Sbjct: 516 LGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHV 575

Query: 709 KKGNCSCMDFW 719
             G CSC D+W
Sbjct: 576 AGGICSCGDYW 586



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 223/453 (49%), Gaps = 55/453 (12%)

Query: 14  LLESC---KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL  C   +++++  ++H  ++ +  L     S++LI  +    C   L  +R +F ++ 
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC---LGCARHVFDEMR 72

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  W  ++ GYS+     EAL L+  ML +    PN FTF  VL+SC   S F+ G 
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQML-RSDTEPNEFTFATVLSSCTGFSGFELGR 131

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH HI K   E  +F+ ++L+  Y+  G I+ A  VFE    RD+VS   +I+GYAQ+ 
Sbjct: 132 QIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 191

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNML 248
               AL LF ++Q   +  +  T+ ++ +A + L     GKQ H+ V   L C +   ++
Sbjct: 192 LDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHV---LRCELPFYVV 248

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L+ ++I+MY+KCG +N A ++F+ M + ++  +W++M+ GY++ GK     +LF  M + 
Sbjct: 249 LQNSLIDMYSKCGNLNYARKIFNNMPV-RTVISWNAMLVGYSKHGKGIEVVKLFKLMREE 307

Query: 309 -----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                D V++ A++SG S  G   + LE+F +M + G   DE+            G   +
Sbjct: 308 NKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGG---DEIEA----------GIEHY 354

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G                      VID+  + G ++ A  +  K+P    T +++ S++  
Sbjct: 355 G---------------------CVIDLLGRAGRVEEAFELIKKMPFE-PTAAIWGSLLGA 392

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
              H    T+I  F    L+ ++P+      +L
Sbjct: 393 CRVH--SNTNIGEFVGCRLLEIEPENAGNYVIL 423



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 19/190 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           ++SLL  L    +L    Q+H  ++   L  ++   + LI  +  S C N L  +R +F+
Sbjct: 215 YASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMY--SKCGN-LNYARKIFN 271

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +    +  WN ++ GYS+     E + L+  M  +  V P++ TF  VL+ C+      
Sbjct: 272 NMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLED 331

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++   ++  G E    I   + H+  +   +  A +V E   A +L+          
Sbjct: 332 KGLEMFDEMMNGGDE----IEAGIEHYGCVIDLLGRAGRVEE---AFELIKKMPF----- 379

Query: 187 QVKEPCPALW 196
              EP  A+W
Sbjct: 380 ---EPTAAIW 386


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/559 (41%), Positives = 347/559 (62%), Gaps = 6/559 (1%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF G  + +   +N +I  Y+   EP  A   +++M  S +  +++TF  +  AC  
Sbjct: 41  AQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRN 100

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L       Q H +V K LG  GS++    A++++YA CG ++ A ++F  +   +   +W
Sbjct: 101 LLAMGEALQVHGLVIK-LG-FGSDVFALNALLHVYALCGEIHCARQLFDNIP-ERDAVSW 157

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + MI GY + G ++ A  +F  M  +++VSWT++ISG  + G   +AL L  +M++ G  
Sbjct: 158 NIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFE 217

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D V + ++L AC  LGALD G+ LH  Y+ N     +  +  A+++MY KCG ++ ALS
Sbjct: 218 LDGVAIASLLTACANLGALDQGRWLHF-YVLNNGVDVDRVIGCALVNMYVKCGDMEEALS 276

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF K+  N K V ++ ++I G A HG G  ++  F  M   G++P+ +TF  VL ACS+G
Sbjct: 277 VFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYG 336

Query: 463 GLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLVEEGK+ F+SM   Y + P +EHYGCMVDLL R GRLDEA  LI+ MP   ++VIW A
Sbjct: 337 GLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGA 396

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL AC +HR+  +G   G  L++++ DH   Y+ L+ +LA   +W+EA +VR  M   G+
Sbjct: 397 LLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGV 456

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVD 640
              PG S +  NG +H FLA  + HPQ ++I+L LK +  +L+   GY P T  ++ D++
Sbjct: 457 PISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLE 516

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
            EEKET ++ HSEKLA+AFGLIN++   TIR+ KNLRIC DCH   KL+S+IY REI++R
Sbjct: 517 NEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMR 576

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D +RFH F+ G+CSC D+W
Sbjct: 577 DRVRFHHFRDGSCSCKDYW 595



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 193/424 (45%), Gaps = 74/424 (17%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN----GLFRSRILFSQIDNPNIFIW 76
           +KQ  QI  Q++ + +   I+  +L + F L+ C +     L  ++ +F+ I +PN F+W
Sbjct: 1   MKQLKQIQAQMIKTAI---ITEPKLATKF-LTLCTSPHVGDLLYAQRVFNGITSPNTFMW 56

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N ++R YS SD P+ A + Y  MLS   V  N++TFPF+L +C  L +     Q+H  +I
Sbjct: 57  NAIIRAYSNSDEPELAFLSYQQMLSSS-VPHNSYTFPFLLRACRNLLAMGEALQVHGLVI 115

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY----------- 185
           K G   D+F  NAL+H Y++ G I+ A ++F+    RD VS+N +I+GY           
Sbjct: 116 KLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYG 175

Query: 186 --------------------AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
                                +  +   AL L  +MQ++  + D     ++ +AC  L  
Sbjct: 176 VFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGA 235

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSS 284
              G+  H  V  N   V  + ++  A++NMY KCG M  A  VF  + G  K    W++
Sbjct: 236 LDQGRWLHFYVLNN--GVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           MI G+   G+                                 +ALE F +M   GI P+
Sbjct: 294 MIDGFAIHGR-------------------------------GVEALEWFNRMRREGIRPN 322

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
            +T  AVLRAC   G ++ GK L +          +I     ++D+  + G +D A  + 
Sbjct: 323 SITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELI 382

Query: 405 YKIP 408
            K+P
Sbjct: 383 KKMP 386



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 166/372 (44%), Gaps = 53/372 (14%)

Query: 14  LLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL +C++L    +ALQ+HG ++  G    + + + L+  +AL G    +  +R LF  I 
Sbjct: 94  LLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCG---EIHCARQLFDNIP 150

Query: 70  NPNIFIWNTLMRGYSRS-----------DSPQEALVLYTSMLSKGIVSP----------- 107
             +   WN ++ GY +S           D P + +V +TS++S G+V             
Sbjct: 151 ERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLIS-GLVEAGQSVEALSLCY 209

Query: 108 ---------NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
                    +      +L +CA L +   G  +H +++  G++ D  I  AL++ Y   G
Sbjct: 210 EMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCG 269

Query: 159 YINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
            +  A  VF G L    +D+  +  +I+G+A       AL  F +M+   I+P++ TF A
Sbjct: 270 DMEEALSVF-GKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTA 328

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGC---VGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           +  AC+       GK+    ++K++ C   V  ++     ++++  + G ++ A+ +   
Sbjct: 329 VLRACSYGGLVEEGKE----LFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKK 384

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQL---FDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           M M  S   W +++             Q+     ++D      +  + +  +  G + +A
Sbjct: 385 MPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEA 444

Query: 330 LELFGKMESLGI 341
            E+  KM+SLG+
Sbjct: 445 AEVRLKMKSLGV 456



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 31/267 (11%)

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +  A+++F+ +   +   W A+I  YS       A   + +M S  +  +  T   +L
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-- 410
           RAC  L A+    ++H   I+ + FG ++F   A++ +YA CG I  A  +F  IP+   
Sbjct: 96  RACRNLLAMGEALQVHGLVIK-LGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDA 154

Query: 411 ---------------------------LKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
                                      LK V  + S+ISGL + G    ++++  EM+  
Sbjct: 155 VSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNA 214

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G + DGV   ++L AC++ G +++G+     +LN G+         +V++  + G ++EA
Sbjct: 215 GFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEA 274

Query: 504 YGLIQSMPYDANSV-IWRALLAACRLH 529
             +   +  +   V IW A++    +H
Sbjct: 275 LSVFGKLKGNQKDVYIWTAMIDGFAIH 301


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/608 (40%), Positives = 370/608 (60%), Gaps = 49/608 (8%)

Query: 122 LSSFKSGCQIHCHIIKFGLEF-DLFIRNALIHFYSIF----GYINNAHKVFEG-SLARDL 175
           +SS     QIH   I+ G+   D  +   LI FY +       ++ AHKVF       ++
Sbjct: 27  VSSITKLRQIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
             +NTLI GYA++     A  L+R+M+ S  ++PD  T+  +  A T + D R+G+  H+
Sbjct: 86  FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           VV ++    GS + ++ +++++YA CG                                 
Sbjct: 146 VVIRS--GFGSLIYVQNSLLHLYANCG--------------------------------D 171

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +  A ++FD+M ++DLV+W ++I+G+++ G   +AL L+ +M S GI PD  T+V++L A
Sbjct: 172 VASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSA 231

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKT 413
           C  +GAL  GKR+H  Y+  V   RN+  +  ++D+YA+CG ++ A ++F + + KN  +
Sbjct: 232 CAKIGALTLGKRVHV-YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--S 288

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREME-LMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           VS + S+I GLA +G G+ +I +F+ ME   GL P  +TFV +L ACSH G+V+EG ++F
Sbjct: 289 VS-WTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYF 347

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             M   Y I+P++EH+GCMVDLLAR G++ +AY  I+SMP   N VIWR LL AC +H +
Sbjct: 348 RRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGD 407

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
           + + E A  ++L LEP+H   YVLLSNM A   RW + +++RK M   G++K PG S +E
Sbjct: 408 SDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVE 467

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
               +H FL   KSHPQ+  I   LK+MT +L+S GYVP    V  DV+EEEKE  V YH
Sbjct: 468 VGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYH 527

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEK+A+AF LI++  +  I + KNLR+C DCHLA KL+S++Y REI+VRD  RFH FK G
Sbjct: 528 SEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNG 587

Query: 712 NCSCMDFW 719
           +CSC D+W
Sbjct: 588 SCSCQDYW 595



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 239/461 (51%), Gaps = 70/461 (15%)

Query: 11  LLALLESCKSLKQAL---------QIHGQIVHSGLNHHISSSQL---ISFFALS-GCKNG 57
           LL ++E C +L Q           QIH   +  G++  IS ++L   + F+ +S      
Sbjct: 11  LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVS--ISDAELGKHLIFYLVSLPSPPP 68

Query: 58  LFRSRILFSQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           +  +  +FS+I+ P N+FIWNTL+RGY+   +   A  LY  M   G+V P+  T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +   ++  + G  IH  +I+ G    ++++N+L+H Y+  G + +A+KVF+    +DLV
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N++ING+A+  +P  AL L+ +M    I+PD FT V++ SAC ++    +GK+ H  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K +G +  N+     ++++YA+CG +  A+ +F  M + K++ +W+S+I G        
Sbjct: 249 IK-VG-LTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLA------ 299

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGF-SQALELFGKMESL-GIHPDEVTMVAVLRA 354
                                     V GF  +A+ELF  MES  G+ P E+T V +L A
Sbjct: 300 --------------------------VNGFGKEAIELFKYMESTEGLLPCEITFVGILYA 333

Query: 355 CVGLG----ALDFGKRLHQQY-IENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           C   G      ++ +R+ ++Y IE  +  FG        ++D+ A+ G +  A      +
Sbjct: 334 CSHCGMVKEGFEYFRRMREEYKIEPRIEHFG-------CMVDLLARAGQVKKAYEYIKSM 386

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           P     V ++ +++     H  G++ +A F  ++++ L+P+
Sbjct: 387 PMQ-PNVVIWRTLLGACTVH--GDSDLAEFARIQILQLEPN 424


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/624 (39%), Positives = 378/624 (60%), Gaps = 15/624 (2%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRIL 64
           L   S +  L +CKS+ Q  QI  QI   GL     + ++L++F A S   N  +  +I 
Sbjct: 141 LTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKI- 199

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F+ + +P++F++N +++ Y++    ++ L+L+  +   G+  P+ FT+PFVL +   L  
Sbjct: 200 FNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGL-WPDGFTYPFVLKAIGCLRD 258

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G ++   I+K G++ D ++ N+LI  Y     + NA K+F+    RD VS+N +I+G
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318

Query: 185 YAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           Y + +    A+  FR+MQ +   +PD  T V+  SACT L +  +G + H  V K LG  
Sbjct: 319 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT 378

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                +  A+++MYAKCG +N+A  +F  M M K+   W+SMISGY   G +  AR LFD
Sbjct: 379 TR---IDNALLDMYAKCGCLNIARNIFDEMSM-KNVICWTSMISGYINCGDLREARDLFD 434

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +   RD+V WTAMI+GY Q   F  A+ LF +M+   + PD+ T+V +L  C  LGAL+ 
Sbjct: 435 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQ 494

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H    EN +   ++ + TA+I+MY+KCG +D +L +FY++    K  + + SII G
Sbjct: 495 GKWIHGYLDENRI-TMDVVVGTALIEMYSKCGCVDKSLEIFYELED--KDTASWTSIICG 551

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
           LA +G    ++ +F EME +G KPD +TF+ VL ACSHGGLVEEG++FF SM   + I+P
Sbjct: 552 LAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 611

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI---WRALLAACRLHRNAKIGEIAG 539
           ++EHYGC++DLL R G LDEA  LIQ +P +   ++   + ALL+ACR+H N  +GE   
Sbjct: 612 KVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLA 671

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +KL ++E    + + LL+N+ A   RWE+A++VR+ M + G++K PG S IE +G +H F
Sbjct: 672 KKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEF 731

Query: 600 LASKKSHPQTKEIELMLKDMTMKL 623
           L    SHP+  EI  ML  +T +L
Sbjct: 732 LVGDPSHPEMMEICSMLNRVTGQL 755


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/644 (38%), Positives = 377/644 (58%), Gaps = 49/644 (7%)

Query: 88  SPQEALVLYTSMLSKGIVSPNNFT---FPFVLNSCARL-----SSFKSGCQIHCHIIKFG 139
           S Q + + +TS       S  NF      F+L  C  L     SS     QIH   I+ G
Sbjct: 3   STQLSFLCFTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHG 62

Query: 140 L--EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
           +  +   F ++ +    S+   ++ A ++F    A ++ ++NT+I G+A+ + P PA+ L
Sbjct: 63  VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122

Query: 198 FRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           F +M   S I PD  TF  +F A  +L D  +G+  H+VV +N                 
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRN----------------- 165

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
                            G        +S++  Y+  G +  A Q+F+ M  RD V+W ++
Sbjct: 166 -----------------GFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSV 208

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I+G++  G  ++AL L+ +M S G+ PD  TMV++L ACV LGAL  G+R+H  Y+  V 
Sbjct: 209 INGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHM-YMVKVG 267

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
             +N   + A++D+Y+KCG+   A  VF ++ +  ++V  + S+I GLA +GLG  ++ +
Sbjct: 268 LVQNQHASNALLDLYSKCGNFRDAQKVFDEMEE--RSVVSWTSLIVGLAVNGLGNEALKL 325

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F E+E  GLKP  +TFV VL ACSH G+++EG  +F  M   YGI P++EH+GCMVDLL 
Sbjct: 326 FGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLC 385

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G++ +AY  I++MP   N+VIWR LL AC +H + ++GE+A  ++  LE  H   +VL
Sbjct: 386 RAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVL 445

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+ A   RW + + VRK+M   G++K PG+S +E    ++ F+   +SHPQ++E   M
Sbjct: 446 LSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAM 505

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L  +T  LK  GYVP TV V+ D++EEEKET +S+H+EK+A+AF L+N+     IRI KN
Sbjct: 506 LAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKN 565

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+C DCHLA KL+S+++ REI+VRD  RFH FK G+CSC D+W
Sbjct: 566 LRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 219/434 (50%), Gaps = 39/434 (8%)

Query: 12  LALLESCKSLKQAL-QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++L++ C S +  L QIH   +  G+            FAL      +  +  +F+QI  
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PNIF WNT++RG++ S++P  A+ L++ M +   + P+  TFPF+  + A+L     G  
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH  +++ G +   F++N+L+H YS+ G + +A++VFE    RD V++N++ING+A    
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL L+R+M    ++PD FT V++ SAC EL    +G++ H  + K +G V  N    
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK-VGLV-QNQHAS 275

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A++++Y+KCG    A++VF  M   +S  +W+S+I G    G                 
Sbjct: 276 NALLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVGLAVNG----------------- 317

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                       +G  ++AL+LFG++E  G+ P E+T V VL AC   G LD G    ++
Sbjct: 318 ------------LG--NEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRR 363

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG-- 428
             E       I     ++D+  + G +  A      +P     V ++ +++     HG  
Sbjct: 364 MKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAV-IWRTLLGACTIHGHL 422

Query: 429 -LGETSIAVFREME 441
            LGE + A  + +E
Sbjct: 423 ELGEVARAEIQRLE 436


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/675 (37%), Positives = 395/675 (58%), Gaps = 32/675 (4%)

Query: 51  LSGC--KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN 108
           L GC     L  +R+LF Q+   ++  WN ++ GY+++   +EA  ++  M  K  +S N
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 96

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
                +V N   R+   +        + +   +++L   N ++  Y     + +A  +F+
Sbjct: 97  GMLAAYVQN--GRIEDAR-------RLFESKADWELISWNCMMGGYVKRNRLVDARGIFD 147

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LND 225
               RD VS+NT+I+GYAQ  E   A  LF   ++S ++ D FT+ AM S   +   L++
Sbjct: 148 RMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTWTAMVSGYVQNGMLDE 203

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
            R  + F  +  KN   V  N     A+I  Y +C  M+ A  +F  M   ++ ++W++M
Sbjct: 204 AR--RVFDGMPEKN--SVSWN-----AIIAGYVQCKRMDQARELFEAMP-CQNVSSWNTM 253

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I+GY + G I +AR  FD+M QRD +SW A+I+GY+Q G   +AL LF +M+  G   + 
Sbjct: 254 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 313

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            T  + L  C  + AL+ GK++H + ++        ++  A++ MY KCG+ID A  VF 
Sbjct: 314 STFTSTLSTCAEIAALELGKQVHGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFE 372

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
            I +  K V  +N++I+G A+HG G+ ++ +F  M+  G+ PD VT V VL ACSH GLV
Sbjct: 373 GIEE--KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 430

Query: 466 EEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++G ++F SM  +YGI    +HY CM+DLL R GRLD+A  L+++MP++ ++  W ALL 
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           A R+H N ++GE A + + ++EPD+   YVLLSN+ A + RW +  ++R  M D G++K 
Sbjct: 491 ASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKV 550

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           PG+S++E    +H F      HP+   I   L+++ +K+K  GYV +T  V+ DV+EEEK
Sbjct: 551 PGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEK 610

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
             ++ YHSEKLA+AFG++   +   IR+ KNLR+C DCH A K +S+I  R I++RD+ R
Sbjct: 611 VHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHR 670

Query: 705 FHLFKKGNCSCMDFW 719
           FH F  G CSC D+W
Sbjct: 671 FHHFNGGQCSCGDYW 685



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 54/265 (20%)

Query: 6   LEHSSLLALLESCK---SLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNG-LF 59
           L  S+  + L +C    +L+   Q+HG++V +GL    ++ ++ L+ +     CK G + 
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMY-----CKCGNID 365

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            + I+F  I+   +  WNT++ GY+R    +EAL+L+ SM   GI+ P++ T   VL++C
Sbjct: 366 DAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSAC 424

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI---FGYINNAHKVFEGSLARDLV 176
           +           H  ++  G E+          FYS+   +G   N+             
Sbjct: 425 S-----------HTGLVDKGTEY----------FYSMTQDYGITANSKH----------- 452

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
            Y  +I+   +      A  L + M     +PDA T+ A+  A     +  +G++   ++
Sbjct: 453 -YTCMIDLLGRAGRLDDAQNLMKNMP---FEPDAATWGALLGASRIHGNTELGEKAAKMI 508

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCG 261
           ++       N  +   + N+YA  G
Sbjct: 509 FE---MEPDNSGMYVLLSNLYAASG 530


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/644 (38%), Positives = 377/644 (58%), Gaps = 49/644 (7%)

Query: 88  SPQEALVLYTSMLSKGIVSPNNFT---FPFVLNSCARL-----SSFKSGCQIHCHIIKFG 139
           S Q + + +TS       S  NF      F+L  C  L     SS     QIH   I+ G
Sbjct: 3   STQLSFLCFTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHG 62

Query: 140 L--EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
           +  +   F ++ +    S+   ++ A ++F    A ++ ++NT+I G+A+ + P PA+ L
Sbjct: 63  VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122

Query: 198 FRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           F +M   S I PD  TF  +F A  +L D  +G+  H+VV +N                 
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRN----------------- 165

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
                            G        +S++  Y+  G  E A Q+F+ M  RD V+W ++
Sbjct: 166 -----------------GFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSV 208

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I+G++  G  ++AL L+ +M S G+ PD  TMV++L ACV LGAL  G+R+H  Y+  V 
Sbjct: 209 INGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHM-YMVKVG 267

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
             +N   + A++D+Y+KCG+   A  VF ++ +  ++V  + S+I GLA +GLG  ++ +
Sbjct: 268 LVQNQHASNALLDLYSKCGNFRDAQKVFDEMEE--RSVVSWTSLIVGLAVNGLGNEALKL 325

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F E+E  GLKP  +TFV VL ACSH G+++EG  +F  M   YGI P++EH+GCMVDLL 
Sbjct: 326 FGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLC 385

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G++ +AY  I++MP   N+VIWR LL AC +H + ++GE+A  ++  LE  H   +VL
Sbjct: 386 RAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVL 445

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+ A   RW + + VRK+M   G++K PG+S +E    ++ F+   +SHPQ++E   M
Sbjct: 446 LSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAM 505

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L  +T  LK  GYVP TV V+ D++EEEKET +S+H+EK+A+AF L+N+     IRI KN
Sbjct: 506 LAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKN 565

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+C DCHLA KL+S+++ REI+VRD  RFH FK G+CSC D+W
Sbjct: 566 LRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 220/434 (50%), Gaps = 39/434 (8%)

Query: 12  LALLESCKSLKQAL-QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++L++ C S +  L QIH   +  G+            FAL      +  +  +F+QI  
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PNIF WNT++RG++ S++P  A+ L++ M +   + P+  TFPF+  + A+L     G  
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH  +++ G +   F++N+L+H YS+FG+  +A++VFE    RD V++N++ING+A    
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL L+R+M    ++PD FT V++ SAC EL    +G++ H  + K +G V  N    
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK-VGLV-QNQHAS 275

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A++++Y+KCG    A++VF  M   +S  +W+S+I G    G                 
Sbjct: 276 NALLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVGLAVNG----------------- 317

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                       +G  ++AL+LFG++E  G+ P E+T V VL AC   G LD G    ++
Sbjct: 318 ------------LG--NEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRR 363

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG-- 428
             E       I     ++D+  + G +  A      +P     V ++ +++     HG  
Sbjct: 364 MKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAV-IWRTLLGACTIHGHL 422

Query: 429 -LGETSIAVFREME 441
            LGE + A  + +E
Sbjct: 423 ELGEVARAEIQRLE 436


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/755 (35%), Positives = 416/755 (55%), Gaps = 53/755 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+L      K L+   Q+HG +V SG    +  ++ L+  +A   C +    S+ LF +
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYA--KC-DEFLDSKRLFDE 217

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I   N+  WN L   Y + D   EA+ L+  M+  GI  PN F+   ++N+C  L     
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGI-KPNEFSLSSMVNACTGLRDSSR 276

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH ++IK G ++D F  NAL+  Y+  G + +A  VFE     D+VS+N +I G   
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 188 VKEPCPALWLF----RKMQDSCIQPD-------AFTFVAMFSACTELNDPRIGKQFHAVV 236
            +    AL L     R++  S ++ D       +   V M+S C  L D R+   F+ + 
Sbjct: 337 HEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMA--FNLLP 394

Query: 237 YKNLGC----------------------------VGSNMLLKTAVINMYAKCGLMNMAER 268
            K+L                              +G N    + ++   A   ++++  +
Sbjct: 395 EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQ 454

Query: 269 VFS---TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           V       G        +S+I  Y +   +E A ++F++    DLVS+T+MI+ Y+Q G 
Sbjct: 455 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 514

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +AL+LF +M+ + + PD     ++L AC  L A + GK+LH  +I    F  +IF   
Sbjct: 515 GEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHV-HILKYGFVLDIFAGN 573

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           ++++MYAKCGSID A   F ++ +  + +  ++++I GLAQHG G  ++ +F +M   G+
Sbjct: 574 SLVNMYAKCGSIDDAGRAFSELTE--RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAY 504
            P+ +T V+VL AC+H GLV E K +FESM   +G KP  EHY CM+DLL R G+++EA 
Sbjct: 632 SPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAV 691

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
            L+  MP++AN+ +W ALL A R+H++ ++G  A + L  LEP+    +VLL+N+ A   
Sbjct: 692 ELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAG 751

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           +WE   +VR+LM DS ++K PG S+IE    ++ FL   +SH +++EI   L +++  + 
Sbjct: 752 KWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMD 811

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
            AGYVP     + DV++ EKE ++ +HSEKLA+AFGLI +     IR+ KNLR+C DCH 
Sbjct: 812 KAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHT 871

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           AFK + +I  REI+VRD  RFH FK G+CSC D+W
Sbjct: 872 AFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 161/572 (28%), Positives = 283/572 (49%), Gaps = 55/572 (9%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           + +S LL+   + KSL+  LQIH  I  SGL+   S  + LI+ +  S C+   + +R L
Sbjct: 57  VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY--SKCRXFGY-ARKL 113

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
             +   P++  W+ L+ GY+++     AL+ +  M   G V  N FTF  VL +C+ +  
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKD 172

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G Q+H  ++  G E D+F+ N L+  Y+      ++ ++F+    R++VS+N L + 
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y Q      A+ LF +M  S I+P+ F+  +M +ACT L D   GK  H  + K LG   
Sbjct: 233 YVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK-LG-YD 290

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---------------- 288
            +     A+++MYAK G +  A  VF  +       +W+++I+G                
Sbjct: 291 WDPFSANALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 289 ---------------------------YTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                                      Y++   +E AR  F+ + ++DL++W A+ISGYS
Sbjct: 350 MKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 409

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q     +AL LF +M   GI  ++ T+  +L++  GL  +   +++H   +++  F  +I
Sbjct: 410 QYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS-GFHSDI 468

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++  ++ID Y KC  ++ A  +F +    +  +  F S+I+  AQ+G GE ++ +F EM+
Sbjct: 469 YVVNSLIDSYGKCSHVEDAERIFEEC--TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 526

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
            M LKPD     ++L AC++    E+GKQ    +L YG    +     +V++ A+ G +D
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           +A G   S   +   V W A++     H + +
Sbjct: 587 DA-GRAFSELTERGIVSWSAMIGGLAQHGHGR 617



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 51/379 (13%)

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           S+ PQ   +L  +++ KG  +P + ++  +L+ C    S + G QIH HI K GL  D  
Sbjct: 35  SEDPQTTAIL--NLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 146 IRNALIHFYS---IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           IRN LI+ YS    FGY   A K+ + S   DLVS++ LI+GYAQ      AL  F +M 
Sbjct: 93  IRNHLINLYSKCRXFGY---ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              ++ + FTF ++  AC+ + D RIGKQ H VV  + G  G   +  T V+ MYAKC  
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVS-GFEGDVFVANTLVV-MYAKCDE 207

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
              ++R+                                FD++ +R++VSW A+ S Y Q
Sbjct: 208 FLDSKRL--------------------------------FDEIPERNVVSWNALFSCYVQ 235

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                +A+ LF +M   GI P+E ++ +++ AC GL     GK +H  Y+  + +  + F
Sbjct: 236 XDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIH-GYLIKLGYDWDPF 294

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME- 441
              A++DMYAK G +  A+SVF KI K    VS +N++I+G   H   E ++ +  +M+ 
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKI-KQPDIVS-WNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 442 -----LMGLKPDGVTFVTV 455
                LM +  +   FV+V
Sbjct: 353 QLHSSLMKMDMESDLFVSV 371



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 165/361 (45%), Gaps = 39/361 (10%)

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI    Q  E      +   +      P + ++  + S C      R G Q HA + K+ 
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS- 85

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +  +  ++  +IN+Y+KC       R F                 GY        AR+
Sbjct: 86  -GLSDDPSIRNHLINLYSKC-------RXF-----------------GY--------ARK 112

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           L D+  + DLVSW+A+ISGY+Q G    AL  F +M  LG+  +E T  +VL+AC  +  
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L  GK++H   + +  F  ++F+   ++ MYAKC     +  +F +IP+  + V  +N++
Sbjct: 173 LRIGKQVHGVVVVSG-FEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE--RNVVSWNAL 229

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
            S   Q      ++ +F EM L G+KP+  +  +++ AC+       GK     ++  G 
Sbjct: 230 FSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG-EIAG 539
                    +VD+ A+ G L +A  + + +    + V W A++A C LH + +   E+ G
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 540 Q 540
           Q
Sbjct: 349 Q 349



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 143/298 (47%), Gaps = 14/298 (4%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSR 62
           +L+ ++ L ++  C+      Q+HG  V SG +   ++ +S + S+   S  ++    + 
Sbjct: 439 ILKSTAGLQVVHVCR------QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVED----AE 488

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F +    ++  + +++  Y++    +EAL L+  M    +  P+ F    +LN+CA L
Sbjct: 489 RIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL-KPDRFVCSSLLNACANL 547

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S+F+ G Q+H HI+K+G   D+F  N+L++ Y+  G I++A + F     R +VS++ +I
Sbjct: 548 SAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMI 607

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            G AQ      AL LF +M    + P+  T V++  AC         K +   + +  G 
Sbjct: 608 GGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFG- 666

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                     +I++  + G +N A  + + M    + + W +++        +E  R+
Sbjct: 667 FKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRR 724


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 377/620 (60%), Gaps = 15/620 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQI 68
           S +  L +CKS+ Q  QI  QI   GL     + ++L++F A S   N  +  +I F+ +
Sbjct: 99  SCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKI-FNYV 157

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +P++F++N +++ Y++    ++ L+L+  +   G+  P+ FT+PFVL +   L   + G
Sbjct: 158 QDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLW-PDGFTYPFVLKAIGCLRDVRQG 216

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            ++   I+K G++ D ++ N+LI  Y     + NA K+F+    RD VS+N +I+GY + 
Sbjct: 217 EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRC 276

Query: 189 KEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
           +    A+  FR+MQ +   +PD  T V+  SACT L +  +G + H  V K LG      
Sbjct: 277 RRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTR-- 334

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+++MYAKCG +N+A  +F  M M K+   W+SMISGY   G +  AR LFD+   
Sbjct: 335 -IDNALLDMYAKCGCLNIARNIFDEMSM-KNVICWTSMISGYINCGDLREARDLFDKSPV 392

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+V WTAMI+GY Q   F  A+ LF +M+   I PD+ T+V +L  C  LGAL+ GK +
Sbjct: 393 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWI 452

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H    EN +   ++ + TA+I+MY+KCG +D +L +FY++    K  + + SII GLA +
Sbjct: 453 HGYLDENRI-TMDVVVGTALIEMYSKCGCVDKSLEIFYELED--KDTASWTSIICGLAMN 509

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G    ++ +F EME +G KPD +TF+ VL ACSHGGLVEEG++FF SM   + I+P++EH
Sbjct: 510 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH 569

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVI---WRALLAACRLHRNAKIGEIAGQKLL 543
           YGC++DLL R G LDEA  LIQ +P +   ++   + ALL+ACR+H N  +GE   +KL 
Sbjct: 570 YGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLE 629

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           ++E    + + LL+N+ A   RWE+A++VR+ M + G++K PG S IE +G +H FL   
Sbjct: 630 NIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGD 689

Query: 604 KSHPQTKEIELMLKDMTMKL 623
            SHP+  EI  ML  +T +L
Sbjct: 690 PSHPEMIEICSMLNRVTGQL 709


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/720 (35%), Positives = 391/720 (54%), Gaps = 49/720 (6%)

Query: 7   EHSSLLALLESCKSLK---QALQIHGQIVHSGLNHH-ISSSQLISFFALSGCK-NGLFRS 61
           ++ + + LL  C   +   Q  Q+  QI+  G +   I  + L+     S CK N L  +
Sbjct: 148 DYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVD----SYCKSNRLDLA 203

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             LF ++   +   +N ++ GYS+    ++A+ L+  M + G+  P  FTF  VL +   
Sbjct: 204 CQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGL-KPTEFTFAAVLCANIG 262

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L     G QIH  +IK    +++F+ NAL+ FYS    + +A K+F+    +D VSYN +
Sbjct: 263 LDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 322

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+GYA   +   A  LFR++Q +      F F  M S  +   D  +G+Q HA     + 
Sbjct: 323 ISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI--VT 380

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
              S +L+  ++++MYAKCG                                K E A  +
Sbjct: 381 TADSEILVGNSLVDMYAKCG--------------------------------KFEEAEMI 408

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F  +  R  V WTAMIS Y Q G + + L+LF KM    +  D+ T  ++LRA   + +L
Sbjct: 409 FTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASL 468

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             GK+LH  +I    F  N+F  +A++D+YAKCGSI  A+  F ++P   + +  +N++I
Sbjct: 469 SLGKQLHS-FIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD--RNIVSWNAMI 525

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
           S  AQ+G  E ++  F+EM L GL+PD V+F+ VL ACSH GLVEEG   F SM   Y +
Sbjct: 526 SAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKL 585

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P+ EHY  +VD+L R GR +EA  L+  MP D + ++W ++L ACR+H+N ++   A  
Sbjct: 586 DPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAAD 645

Query: 541 KLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +L ++E     A YV +SN+ A   +WE   +V K M D G++K P +S++E     H F
Sbjct: 646 QLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMF 705

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            A+ + HPQ +EI   +  +T  ++  GY P+T   + + DE+ K   + YHSE+LA+AF
Sbjct: 706 SANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAF 765

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            LI++     I + KNLR C DCH A K++S+I  REI VRD+ RFH F+ G CSC DFW
Sbjct: 766 ALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 186/380 (48%), Gaps = 42/380 (11%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           N +I  Y   G +  A K+F+G + R  V++  LI GY+Q+ +   A  LF +MQ    +
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYK--NLGCVGSNMLLKTAVINMYAKCGLMNM 265
           PD  TFV + S C   N   +G Q   V  +   LG   S +++   +++ Y K   +++
Sbjct: 147 PDYVTFVTLLSGC---NGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRLDL 202

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A ++F  M    S  ++++MI+GY+++G  E+                            
Sbjct: 203 ACQLFKEMPEIDSV-SYNAMITGYSKDGLDEK---------------------------- 233

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
              A+ LF +M++ G+ P E T  AVL A +GL  +  G+++H  ++    F  N+F++ 
Sbjct: 234 ---AVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIH-SFVIKTNFVWNVFVSN 289

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++D Y+K  S+  A  +F ++P+    VS +N IISG A  G  + +  +FRE++    
Sbjct: 290 ALLDFYSKHDSVIDARKLFDEMPEQ-DGVS-YNVIISGYAWDGKHKYAFDLFRELQFTAF 347

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
                 F T+L   S+    E G+Q     +      ++     +VD+ A+ G+ +EA  
Sbjct: 348 DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 407

Query: 506 LIQSMPYDANSVIWRALLAA 525
           +  ++ + + +V W A+++A
Sbjct: 408 IFTNLTHRS-AVPWTAMISA 426



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 138/257 (53%), Gaps = 8/257 (3%)

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           + K G ++ A ++F  M   K+T + + MISGY + G +  AR+LFD M +R  V+WT +
Sbjct: 62  FLKNGELSQARQLFEKMP-HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTIL 120

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I GYSQ+  F +A ELF +M+  G  PD VT V +L  C G    + G ++ Q   + + 
Sbjct: 121 IGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNG---HEMGNQITQVQTQIIK 177

Query: 377 FGRN--IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
            G +  + +   ++D Y K   +D A  +F ++P+ + +VS +N++I+G ++ GL E ++
Sbjct: 178 LGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE-IDSVS-YNAMITGYSKDGLDEKAV 235

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
            +F EM+  GLKP   TF  VLCA      +  G+Q    ++       +     ++D  
Sbjct: 236 NLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFY 295

Query: 495 ARDGRLDEAYGLIQSMP 511
           ++   + +A  L   MP
Sbjct: 296 SKHDSVIDARKLFDEMP 312


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 366/638 (57%), Gaps = 41/638 (6%)

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           +SR  SP  AL ++ ++       P++ TF   L++CARL   + G  +       G + 
Sbjct: 84  HSRRGSPASALRVFRALPPA--ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+F+ ++L+H Y+ +G + +A KVF     RD V+++T++ G+    +P  A+ ++R+M+
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +  ++ D    + +  ACT   + R+G   H  + ++                       
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRH----------------------- 238

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                      GM       +S++  Y + G ++ A ++F  M  R+ VSW+AMISG++Q
Sbjct: 239 -----------GMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQ 287

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G   +AL LF  M++ GI PD   +V+ L AC  +G L  G+ +H   +    F  N  
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF--NCI 345

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L TA IDMY+KCGS+ +A  +F  I    + + L+N++I+    HG G+ ++ +F+EM  
Sbjct: 346 LGTAAIDMYSKCGSLASAQMLFNMISD--RDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G++PD  TF ++L A SH GLVEEGK +F  M+N + I P  +HY C+VDLLAR G ++
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA  L+ SM  +    IW ALL+ C  ++  ++GE     +L+L+PD      L+SN+ A
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            T +W++ RQVRKLM DSG +K PG S IE  GT H F+   +SHPQ +EI   +  + +
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDL 583

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           +++  GY+P T  V  D++EE KE  +SYHSE+LA+AFGL+N+     + I KNLR+CGD
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A K +S+I  REI+VRDA RFH FK G CSC D+W
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/563 (44%), Positives = 356/563 (63%), Gaps = 14/563 (2%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEP-CPALWLFRKM-QDSCIQPDAFTFVAMFSAC 220
           AHK+F+     DL  YNT+I  ++        ++ +FR + +DS   P+ ++FV  F AC
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288

Query: 221 TELNDPRIGKQF--HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
                 R G+Q   HAV    +G  G N+ +  A+I M+ K G +  A  VF +  + + 
Sbjct: 289 GNGMCVREGEQVFTHAV---KVGLDG-NVFVVNALIGMFGKWGRVEDARNVFDS-AVDRD 343

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W++MI  Y   G +  A++LFD+M +RD+VSW+ +I+GY QVG F +AL+ F KM  
Sbjct: 344 FYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ 403

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
             + P+E TMV+ L AC  L ALD GK +H  YI       N  L  ++IDMYAKCG ID
Sbjct: 404 SEVKPNEYTMVSALAACSNLVALDQGKWIHV-YIRRDNIKMNDRLLASLIDMYAKCGEID 462

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           +A SVF++  K  + V  +N++I G A HG  E +I VF +M++  + P+ VTF+ +L A
Sbjct: 463 SASSVFHE-HKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNA 521

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSHG +V+EGK +FE M  +YGI P++EHYGCMVDLL+R G L ++  +I SMP   +  
Sbjct: 522 CSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVA 581

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           IW ALL ACR++++ + G   G+ + +++P+H    VLL N+ + + RW EAR VR+  +
Sbjct: 582 IWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNE 641

Query: 578 -DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
            +S  +K PG+S IE NG  H FL   +SHPQ++EI   L +M  KLK AGYVP   +V+
Sbjct: 642 INSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVL 701

Query: 637 FDVDEEE-KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
            D D+EE KET +S HSEKLA+AFGL+N+     IRI KNLR+CGDCH A K +S++Y R
Sbjct: 702 LDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDR 761

Query: 696 EIMVRDAIRFHLFKKGNCSCMDF 718
            I+VRD +R+H FK G CSC D+
Sbjct: 762 VIIVRDRMRYHHFKDGICSCKDY 784



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 197/436 (45%), Gaps = 70/436 (16%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRIL 64
           + HS L +L++ CKS+ Q  Q H  ++ +  +   + +++ +   AL+     L  +  L
Sbjct: 177 VNHSKLSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVALAS----LTYAHKL 232

Query: 65  FSQIDNPNIFIWNTLMRGYSRSD-SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           F QI  P++FI+NT+++ +S S  S  +++ ++ S++      PN ++F F   +C    
Sbjct: 233 FDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGM 292

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             + G Q+  H +K GL+ ++F+ NALI  +  +G + +A  VF+ ++ RD  S+NT+I 
Sbjct: 293 CVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIG 352

Query: 184 -------------------------------GYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
                                          GY QV     AL  F KM  S ++P+ +T
Sbjct: 353 AYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYT 412

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            V+  +AC+ L     GK  H  VY     +  N  L  ++I+MYAKCG ++ A  VF  
Sbjct: 413 MVSALAACSNLVALDQGKWIH--VYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHE 470

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
             + +    W++MI G+   GK E                               +A+ +
Sbjct: 471 HKVKRKVWPWNAMIGGFAMHGKPE-------------------------------EAINV 499

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F KM+   + P++VT +A+L AC     +  GK   +    +      I     ++D+ +
Sbjct: 500 FEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLS 559

Query: 393 KCGSIDTALSVFYKIP 408
           + G +  +  +   +P
Sbjct: 560 RSGHLKDSEEMILSMP 575


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/596 (40%), Positives = 361/596 (60%), Gaps = 14/596 (2%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-DLVSYNTLINGYAQV 188
           QIH  ++K GL  D +     + F     + + AH VF     R D   +N +I G +  
Sbjct: 29  QIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSCS 88

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +P  +L L+ +M       +A+TF  +  AC+ L+  +   Q HA + K  G  G ++ 
Sbjct: 89  DQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITK-FG-YGHDIY 146

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
              ++IN YA  G    A  +F  +       +W+S+I GY + G+++ A  LF +M ++
Sbjct: 147 AVNSLINSYAVTGNFKHAHLLFDRI-QEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEK 205

Query: 309 D-LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +  +SWT MISGY Q G   +AL+LF +M++  + PD V++ + L AC  LGAL+ GK +
Sbjct: 206 NNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWI 265

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT--VSLFNSIISGLA 425
           H  Y        +  L   +IDMYAKCG ++ AL VF    KN+KT  V ++ ++ISG A
Sbjct: 266 HS-YANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVF----KNMKTKSVQVWTALISGYA 320

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            HGLG  +I+ F EM+ MG+KP+ +TF  VL ACS+ GLVEEGK  F ++  +Y +KP +
Sbjct: 321 YHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTI 380

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHYGCMVDLL R G L+EA   IQ MP   N+VIW +LL AC++H+N ++GE  G+ L++
Sbjct: 381 EHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIE 440

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           ++ +HG  YV ++N+ A   +W++A + R+LM + G+ K PG S I   GT H FLA  +
Sbjct: 441 MDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDR 500

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD-VDEEEKETVVSYHSEKLALAFGLIN 663
           SH + +EI    + +  KL+  GYVP    ++ D VD+EEKE +V  HSEKLA+ +GL+ 
Sbjct: 501 SHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMK 560

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++   TIRI KNLR+C DCH    L+S+IY+R+I++RD  RFH FK G CSC D+W
Sbjct: 561 TKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/663 (37%), Positives = 386/663 (58%), Gaps = 24/663 (3%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L ++R LF  +   ++  WNT++ GY+++    +A  ++  M  K  VS N     +V N
Sbjct: 142 LGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQN 201

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           S           +  C + K    + L   N L+  +     I  A + F+    RD+VS
Sbjct: 202 S---------KMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS 252

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +NT+I GYAQ  +   A  LF    +S +Q D FT+ AM S   +    R+ ++   +  
Sbjct: 253 WNTIITGYAQSGKIDEARQLF---DESPVQ-DVFTWTAMVSGYIQ---NRMVEEARELFD 305

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K       N +   A++  Y +   M MA+ +F  M   ++ + W++MI+GY + GKI  
Sbjct: 306 K---MPERNEVSWNAMLAGYVQGERMEMAKELFDVMP-CRNVSTWNTMITGYAQCGKISE 361

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A+ LFD+M +RD VSW AMI+GYSQ G   +AL LF +ME  G   +  +  + L  C  
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           + AL+ GK+LH + ++   +    F+  A++ MY KCGSI+ A  +F ++    K +  +
Sbjct: 422 VVALELGKQLHGRLVKGG-YETGCFVGNALLLMYCKCGSIEEANDLFKEMAG--KDIVSW 478

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
           N++I+G ++HG GE ++  F  M+  GLKPD  T V VL ACSH GLV++G+Q+F +M  
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +YG+ P  +HY CMVDLL R G L++A+ L+++MP++ ++ IW  LL A R+H N ++ E
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAE 598

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A  K+  +EP++   YVLLSN+ A + RW +  ++R  M D G++K PG+S+IE     
Sbjct: 599 TAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKT 658

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F    + HP+  EI   L+++ +++K AGYV  T  V+ DV+EEEKE +V YHSE+LA
Sbjct: 659 HTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLA 718

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +A+G++   S   IR+ KNLR+C DCH A K ++ I  R I++RD  RFH FK G+CSC 
Sbjct: 719 VAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCG 778

Query: 717 DFW 719
           D+W
Sbjct: 779 DYW 781



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 228/501 (45%), Gaps = 56/501 (11%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + +I  WN  +  Y R+    EAL ++  M     VS N     ++ N    L+      
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELAR----- 115

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
                +     E DL   N +I  Y     +  A ++FE    RD+ S+NT+++GYAQ  
Sbjct: 116 ----KLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNG 171

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---NLGCVGSN 246
               A  +F +M     + +  ++ A+ SA  + +      +   +++K   N   V  N
Sbjct: 172 CVDDARSVFDRMP----EKNDVSWNALLSAYVQNSK----MEEACMLFKSRENWALVSWN 223

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            LL       + K   +  A + F +M + +   +W+++I+GY + GKI+ ARQLFD+  
Sbjct: 224 CLLGG-----FVKKKKIVEARQFFDSMNV-RDVVSWNTIITGYAQSGKIDEARQLFDESP 277

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            +D+ +WTAM+SGY Q     +A ELF KM       +EV+  A+L   V    ++  K 
Sbjct: 278 VQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKE 333

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           L      +V+  RN+     +I  YA+CG I  A ++F K+PK  +    + ++I+G +Q
Sbjct: 334 LF-----DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPK--RDPVSWAAMIAGYSQ 386

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
            G    ++ +F +ME  G + +  +F + L  C+    +E GKQ    ++  G +     
Sbjct: 387 SGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET---- 442

Query: 487 YGCMVD-----LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA--- 538
            GC V      +  + G ++EA  L + M    + V W  ++A    H     GE+A   
Sbjct: 443 -GCFVGNALLLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRH---GFGEVALRF 497

Query: 539 --GQKLLDLEPDHGAHYVLLS 557
               K   L+PD      +LS
Sbjct: 498 FESMKREGLKPDDATMVAVLS 518



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 68/343 (19%)

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           L C  S++      I+ Y + G  N A RVF  M    S+ +++ MISGY R G+ E AR
Sbjct: 57  LKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMP-RWSSVSYNGMISGYLRNGEFELAR 115

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LFD+M +RDLVSW  MI GY +     +A ELF       I P+               
Sbjct: 116 KLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF------EIMPE--------------- 154

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
                              R++     ++  YA+ G +D A SVF ++P+  K    +N+
Sbjct: 155 -------------------RDVCSWNTMLSGYAQNGCVDDARSVFDRMPE--KNDVSWNA 193

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE-----EGKQFFES 474
           ++S   Q+   E +  +F+  E          +  V   C  GG V+     E +QFF+S
Sbjct: 194 LLSAYVQNSKMEEACMLFKSRE---------NWALVSWNCLLGGFVKKKKIVEARQFFDS 244

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
           M    +      +  ++   A+ G++DEA  L    P   +   W A+++    +R  + 
Sbjct: 245 MNVRDVVS----WNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVSGYIQNRMVE- 298

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
                ++L D  P+   + V  + MLA   + E     ++L D
Sbjct: 299 ---EARELFDKMPER--NEVSWNAMLAGYVQGERMEMAKELFD 336


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 387/667 (58%), Gaps = 49/667 (7%)

Query: 64  LFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           LF++ +D  ++F WN+++   +RS    EAL+ ++SM  K  + P   +FP  + +C+ L
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSM-RKLSLYPTRSSFPCAIKACSSL 89

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
               SG Q H     FG + D+F+ +ALI  YS  G + +A KVF+    RD+VS+ ++I
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMI 149

Query: 183 NGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
            GY        A+ LF+ +       D  +  D+   V++ SAC+ +    + +  H+ V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR--EGK 294
            K                                   G  +  +  ++++  Y +  EG 
Sbjct: 210 IKR----------------------------------GFDRGVSVGNTLLDAYAKGGEGG 235

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLR 353
           +  AR++FDQ+  +D VS+ +++S Y+Q G  ++A E+F ++ ++  +  + +T+  VL 
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLL 295

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           A    GAL  GK +H Q I  +    ++ + T++IDMY KCG ++TA   F ++ KN K 
Sbjct: 296 AVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM-KN-KN 352

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + ++I+G   HG    ++ +F  M   G++P+ +TFV+VL ACSH GL  EG ++F 
Sbjct: 353 VRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN 412

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           +M   +G++P +EHYGCMVDLL R G L +AY LIQ M    +S+IW +LLAACR+H+N 
Sbjct: 413 AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNV 472

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++ EI+  +L +L+  +  +Y+LLS++ A+  RW++  +VR +M + G+ KPPG+S +E 
Sbjct: 473 ELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLEL 532

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           NG +H FL   + HPQ ++I   L ++  KL  AGYV NT  V  DVDEEEKE  +  HS
Sbjct: 533 NGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHS 592

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFG++N+    T+ + KNLR+C DCH   KL+S+I  RE +VRDA RFH FK G 
Sbjct: 593 EKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGG 652

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 653 CSCGDYW 659



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 177/381 (46%), Gaps = 67/381 (17%)

Query: 1   MKRLVL--EHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L L    SS    +++C SL       Q H Q    G    I  SS LI  ++  G 
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG- 125

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-------------S 101
              L  +R +F +I   +I  W +++RGY  + +  +A+ L+  +L             S
Sbjct: 126 --KLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY-- 159
            G+VS        V+++C+R+ +      IH  +IK G +  + + N L+  Y+  G   
Sbjct: 184 MGLVS--------VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGG 235

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFS 218
           +  A K+F+  + +D VSYN++++ YAQ      A  +FR++ ++  +  +A T   +  
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLL 295

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           A +     RIGK  H  V + +G +  ++++ T++I+MY KCG +  A + F  M  +K+
Sbjct: 296 AVSHSGALRIGKCIHDQVIR-MG-LEDDVIVGTSIIDMYCKCGRVETARKAFDRM-KNKN 352

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W++MI+GY   G                                 ++ALELF  M  
Sbjct: 353 VRSWTAMIAGYGMHGHA-------------------------------AKALELFPAMID 381

Query: 339 LGIHPDEVTMVAVLRACVGLG 359
            G+ P+ +T V+VL AC   G
Sbjct: 382 SGVRPNYITFVSVLAACSHAG 402



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 140/300 (46%), Gaps = 8/300 (2%)

Query: 4   LVLEHSSLLALLESC-----KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL 58
           + L+   L++++ +C     K L ++  IH  ++  G +  +S    +      G + G+
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTES--IHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGV 236

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +R +F QI + +   +N++M  Y++S    EA  ++  ++   +V+ N  T   VL +
Sbjct: 237 AVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLA 296

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
            +   + + G  IH  +I+ GLE D+ +  ++I  Y   G +  A K F+    +++ S+
Sbjct: 297 VSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSW 356

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
             +I GY        AL LF  M DS ++P+  TFV++ +AC+       G ++   +  
Sbjct: 357 TAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKG 416

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
             G V   +     ++++  + G +  A  +   M M   +  WSS+++       +E A
Sbjct: 417 RFG-VEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELA 475


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/598 (40%), Positives = 354/598 (59%), Gaps = 40/598 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF------EGSLARDLVSYNTLIN 183
           QIH  I+K GL  +  +        S F  ++ A  V           + D   +NTLI 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 184 GYAQVKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            +AQ     P AL  +  M+   + P+ FTF  +  AC  +    +G   HA + K  G 
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVK-FG- 257

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              +  ++  +++MY  C             G S   +A                 +++F
Sbjct: 258 FEEDPHVRNTLVHMYCCC----------CQDGSSGPVSA-----------------KKVF 290

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+   +D V+W+AMI GY++ G  ++A+ LF +M+  G+ PDE+TMV+VL AC  LGAL+
Sbjct: 291 DESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALE 350

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK L + YIE     R++ L  A+IDM+AKCG +D A+ VF ++   ++T+  + S+I 
Sbjct: 351 LGKWL-ESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREM--KVRTIVSWTSMIV 407

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           GLA HG G  ++ VF EM   G+ PD V F+ VL ACSH GLV++G  +F +M N + I 
Sbjct: 408 GLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIV 467

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P++EHYGCMVD+L+R GR++EA   +++MP + N VIWR+++ AC      K+GE   ++
Sbjct: 468 PKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKE 527

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L+  EP H ++YVLLSN+ A+  RWE+  +VR++MD  G++K PG + IE N  ++ F+A
Sbjct: 528 LIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVA 587

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             KSH Q KEI  M+++M  ++K AGYVP T QV+ D+DEE+KE  +  HSEKLA+AF L
Sbjct: 588 GDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFAL 647

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +++     IRI KNLR+C DCH A K +S++Y REI+VRD  RFH FK G CSC DFW
Sbjct: 648 LSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 211/435 (48%), Gaps = 54/435 (12%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGL-FRSRILF--SQIDNP---NIFIWNTL 79
           QIH  I+  GL+H  +   L  F A S   N + + S +LF   Q   P   + F++NTL
Sbjct: 140 QIHSLILKLGLHH--NPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTL 197

Query: 80  MRGYSRSD-SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           +R ++++  S   AL  Y +M  +  VSPN FTFPFVL +CA +   + G  +H  ++KF
Sbjct: 198 IRAFAQTTHSKPHALRFYNTM-RRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKF 256

Query: 139 GLEFDLFIRNALIHFYSI------FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
           G E D  +RN L+H Y         G + +A KVF+ S  +D V+++ +I GYA+     
Sbjct: 257 GFEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMIGGYARAGNSA 315

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A+ LFR+MQ + + PD  T V++ SAC +L    +GK   + + +    +  ++ L  A
Sbjct: 316 RAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERK--NIMRSVELCNA 373

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +I+M+AKCG ++ A +VF  M + ++  +W+SMI G    G+   A  +FD+M ++    
Sbjct: 374 LIDMFAKCGDVDRAVKVFREMKV-RTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQ---- 428

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                                      G+ PD+V  + VL AC   G +D G        
Sbjct: 429 ---------------------------GVDPDDVAFIGVLSACSHSGLVDKGHYYFNTME 461

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
                   I     ++DM ++ G ++ AL     +P     V ++ SI++  A H  GE 
Sbjct: 462 NMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQV-IWRSIVT--ACHARGEL 518

Query: 433 SIAVFREMELMGLKP 447
            +      EL+  +P
Sbjct: 519 KLGESVAKELIRREP 533


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/716 (34%), Positives = 400/716 (55%), Gaps = 57/716 (7%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN------GLFRSRIL 64
           LL+ C     L+   +IHG +V SG +        +  FA++G +N       +  +R +
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFS--------LDLFAMTGLENMYAKCRQVNEARKV 192

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++   ++  WNT++ GYS++   + AL +  SM  + +  P+  T   VL + + L  
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENL-KPSFITIVSVLPAVSALRL 251

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G +IH + ++ G +  + I  AL+  Y+  G +  A ++F+G L R++VS+N++I+ 
Sbjct: 252 ISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 311

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y Q + P  A+ +F+KM D  ++P   + +    AC +L D   G+  H           
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH----------- 360

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                                  ++   +G+ ++ +  +S+IS Y +  +++ A  +F +
Sbjct: 361 -----------------------KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK 397

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  R LVSW AMI G++Q G    AL  F +M S  + PD  T V+V+ A   L      
Sbjct: 398 LQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K +H   + + +  +N+F+TTA++DMYAKCG+I  A  +F  + +  + V+ +N++I G 
Sbjct: 458 KWIHGVVMRSCL-DKNVFVTTALVDMYAKCGAIMIARLIFDMMSE--RHVTTWNAMIDGY 514

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG-KQFFESMLNYGIKPQ 483
             HG G+ ++ +F EM+   +KP+GVTF++V+ ACSH GLVE G K F+    NY I+  
Sbjct: 515 GTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELS 574

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           M+HYG MVDLL R GRL+EA+  I  MP      ++ A+L AC++H+N    E A ++L 
Sbjct: 575 MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLF 634

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L PD G ++VLL+N+      WE+  QVR  M   G++K PG S +E    +H F +  
Sbjct: 635 ELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGS 694

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            +HP +K+I   L+ +   +K AGYVP+T  +V  V+ + KE ++S HSEKLA++FGL+N
Sbjct: 695 TAHPDSKKIYAFLEKLICHIKEAGYVPDT-NLVLGVENDVKEQLLSTHSEKLAISFGLLN 753

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + +  TI + KNLR+C DCH A K +S +  REI+VRD  RFH FK G CSC D+W
Sbjct: 754 TTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 135/262 (51%), Gaps = 4/262 (1%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + ++S + R G ++ A ++F+ +D +  V +  M+ G+++V    +AL+ F +M    + 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P       +L+ C     L  GK +H   +++  F  ++F  T + +MYAKC  ++ A  
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GFSLDLFAMTGLENMYAKCRQVNEARK 191

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF ++P+  + +  +N+I++G +Q+G+   ++ + + M    LKP  +T V+VL A S  
Sbjct: 192 VFDRMPE--RDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
            L+  GK+     +  G    +     +VD+ A+ G L+ A  L   M  + N V W ++
Sbjct: 250 RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSM 308

Query: 523 LAACRLHRNAKIGEIAGQKLLD 544
           + A   + N K   +  QK+LD
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLD 330


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 403/715 (56%), Gaps = 46/715 (6%)

Query: 10  SLLALLESCKSLKQALQ---IHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILF 65
           SL +++ +C  L+ + +   IHG ++  G +    S++ L+  +A  G    L  +  +F
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG---DLADAISVF 316

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            +I  P+I  WN ++ G    +  ++AL L   M   GI  PN FT    L +CA +   
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC-PNIFTLSSALKACAGMGLK 375

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G Q+H  ++K  +E DLF+   L+  YS    + +A   F     +DL+++N +I+GY
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           +Q  E   AL LF +M    I  +  T   +  +   L    + +Q H +  K+     S
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS--GFHS 493

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  ++I+ Y KC                                  +E A ++F++ 
Sbjct: 494 DIYVVNSLIDSYGKCS--------------------------------HVEDAERIFEEC 521

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
              DLVS+T+MI+ Y+Q G   +AL+LF +M+ + + PD     ++L AC  L A + GK
Sbjct: 522 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 581

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           +LH  +I    F  +IF   ++++MYAKCGSID A   F ++ +  + +  ++++I GLA
Sbjct: 582 QLHV-HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE--RGIVSWSAMIGGLA 638

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
           QHG G  ++ +F +M   G+ P+ +T V+VL AC+H GLV E K +FESM   +G KP  
Sbjct: 639 QHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQ 698

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY CM+DLL R G+++EA  L+  MP++AN+ +W ALL A R+H++ ++G  A + L  
Sbjct: 699 EHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFI 758

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           LEP+    +VLL+N+ A   +WE   +VR+LM DS ++K PG S+IE    ++ FL   +
Sbjct: 759 LEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDR 818

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SH +++EI   L +++  +  AGYVP     + DV++ EKE ++ +HSEKLA+AFGLI +
Sbjct: 819 SHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIAT 878

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                IR+ KNLR+C DCH AFK + +I  REI+VRD  RFH FK G+CSC D+W
Sbjct: 879 PQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 234/452 (51%), Gaps = 42/452 (9%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRIL 64
           + +S LL+   + KSL+  LQIH  I  SGL+   S  + LI+ +  S C+N  + +R L
Sbjct: 57  VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLY--SKCRNFGY-ARKL 113

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
             +   P++  W+ L+ GY+++     AL+ +  M   G V  N FTF  VL +C+ +  
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKD 172

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G Q+H  ++  G E D+F+ N L+  Y+      ++ ++F+    R++VS+N L + 
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y Q+     A+ LF +M  S I+P+ F+  +M +ACT L D   GK  H  + K LG   
Sbjct: 233 YVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK-LG-YD 290

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            +     A+++MYAK G                                 +  A  +F++
Sbjct: 291 WDPFSANALVDMYAKVG--------------------------------DLADAISVFEK 318

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           + Q D+VSW A+I+G        QALEL G+M+  GI P+  T+ + L+AC G+G  + G
Sbjct: 319 IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG 378

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           ++LH   ++ +    ++F++  ++DMY+KC  ++ A   F  +P+  K +  +N+IISG 
Sbjct: 379 RQLHSSLMK-MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE--KDLIAWNAIISGY 435

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +Q+     ++++F EM   G+  +  T  T+L
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 467



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 227/443 (51%), Gaps = 46/443 (10%)

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           S  PQ   +L  +++ KG  +P + ++  +L+ C    S + G QIH HI K GL  D  
Sbjct: 35  SQDPQTTAIL--NLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 146 IRNALIHFYSI---FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           IRN LI+ YS    FGY   A K+ + S   DLVS++ LI+GYAQ      AL  F +M 
Sbjct: 93  IRNHLINLYSKCRNFGY---ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              ++ + FTF ++  AC+ + D RIGKQ H VV  + G  G   +  T V+ MYAKC  
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVS-GFEGDVFVANTLVV-MYAKCDE 207

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
              ++R                                LFD++ +R++VSW A+ S Y Q
Sbjct: 208 FLDSKR--------------------------------LFDEIPERNVVSWNALFSCYVQ 235

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
           +    +A+ LF +M   GI P+E ++ +++ AC GL     GK +H  Y+  + +  + F
Sbjct: 236 IDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIH-GYLIKLGYDWDPF 294

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
              A++DMYAK G +  A+SVF KI K    VS +N++I+G   H   E ++ +  +M+ 
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKI-KQPDIVS-WNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            G+ P+  T  + L AC+  GL E G+Q   S++   ++  +     +VD+ ++   L++
Sbjct: 353 SGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 412

Query: 503 AYGLIQSMPYDANSVIWRALLAA 525
           A      +P + + + W A+++ 
Sbjct: 413 ARMAFNLLP-EKDLIAWNAIISG 434



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SSLL    +  + +Q  Q+H  I+  G    I + + L++ +A  G  +   R+   FS+
Sbjct: 565 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA---FSE 621

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           +    I  W+ ++ G ++    ++AL L+  ML +G VSPN+ T   VL +C
Sbjct: 622 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG-VSPNHITLVSVLGAC 672


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/660 (36%), Positives = 383/660 (58%), Gaps = 24/660 (3%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   ++  WN+L+ GY+++    EA  ++ +M  K  +S N     +V N   
Sbjct: 130 ARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN--G 187

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           R+          C + +   ++DL   N L+  +     + +A  +F+    RD +S+NT
Sbjct: 188 RIEE-------ACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT 240

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GYAQ      A    R++ D     D FT+ AM S   +       K F   + +  
Sbjct: 241 MISGYAQGGGLSQA----RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE-- 294

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                N +   A+I  Y +   M++A  +F +M   ++ ++W++MI+GY + G I +AR+
Sbjct: 295 ----KNEVSYNAMIAGYVQTKKMDIARELFESMP-CRNISSWNTMITGYGQIGDIAQARK 349

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
            FD M QRD VSW A+I+GY+Q G + +AL +F +++  G   +  T    L  C  + A
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L+ GK++H Q ++ + +G   F+  A++ MY KCGSID A   F  I +  K V  +N++
Sbjct: 410 LELGKQIHGQAVK-MGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEE--KDVVSWNTM 466

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYG 479
           ++G A+HG G  ++ VF  M+  G+KPD +T V VL ACSH GL++ G ++F SM  +YG
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P  +HY CM+DLL R GRL+EA  LI++MP+   +  W ALL A R+H N ++GE A 
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           + +  +EP +   YVLLSN+ A + RW +A ++R  M D G+QK PG+S++E    +H F
Sbjct: 587 EMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTF 646

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
                SHP+ + I   L+++ +K++  GYV  T  V+ DV+EEEKE ++ YHSEKLA+AF
Sbjct: 647 SVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAF 706

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           G++       IR+ KNLR+C DCH A K +S+I  R I++RD+ RFH F +G CSC D+W
Sbjct: 707 GILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 177/411 (43%), Gaps = 62/411 (15%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           IS + +IS +A  G   GL ++R LF +    ++F W  ++ GY ++    EA   +  M
Sbjct: 236 ISWNTMISGYAQGG---GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSS--FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
             K  VS N     +V      ++   F+S   + C  I           N +I  Y   
Sbjct: 293 PEKNEVSYNAMIAGYVQTKKMDIARELFES---MPCRNISSW--------NTMITGYGQI 341

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G I  A K F+    RD VS+  +I GYAQ      AL +F +++      +  TF    
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           S C ++    +GKQ H    K +G  G+   +  A++ MY KCG ++ A   F  +   K
Sbjct: 402 STCADIAALELGKQIHGQAVK-MG-YGTGCFVGNALLAMYFKCGSIDEANDTFEGI-EEK 458

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
              +W++M++GY R G        F +                       QAL +F  M+
Sbjct: 459 DVVSWNTMLAGYARHG--------FGR-----------------------QALTVFESMK 487

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT----TAVIDMYAK 393
           + G+ PDE+TMV VL AC   G LD G     +Y  ++     +  T    T +ID+  +
Sbjct: 488 TAGVKPDEITMVGVLSACSHTGLLDRG----TEYFYSMTKDYGVIPTSKHYTCMIDLLGR 543

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREME 441
            G ++ A  +   +P      S + +++     HG   LGE +  +  +ME
Sbjct: 544 AGRLEEAQDLIRNMPFQPGAAS-WGALLGASRIHGNTELGEKAAEMVFKME 593



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 191/464 (41%), Gaps = 75/464 (16%)

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++ +P+I  WN  +  + R+     AL ++ +M  +  VS N     ++ NS        
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS-------- 94

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
                     KF L                      A  +F+    RDL S+N ++ GY 
Sbjct: 95  ----------KFNL----------------------ARNLFDQMPERDLFSWNVMLTGYV 122

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCV 243
           +      A    R++ D   + D  ++ ++ S   +   +++ R  + F  +  KN   +
Sbjct: 123 RNCRLGDA----RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR--EVFDNMPEKN--SI 174

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N LL   V N     G +  A  +F +        +W+ ++ G+ R+ K+  AR LFD
Sbjct: 175 SWNGLLAAYVHN-----GRIEEACLLFESKS-DWDLISWNCLMGGFVRKKKLGDARWLFD 228

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M  RD +SW  MISGY+Q GG SQA  LF +  +     D  T  A++   V  G LD 
Sbjct: 229 KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT----RDVFTWTAMVSGYVQNGMLDE 284

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            K    +  E     +N     A+I  Y +   +D A  +F  +P   + +S +N++I+G
Sbjct: 285 AKTFFDEMPE-----KNEVSYNAMIAGYVQTKKMDIARELFESMP--CRNISSWNTMITG 337

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             Q G     IA  R+   M  + D V++  ++   +  G  EE    F  +   G    
Sbjct: 338 YGQIG----DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393

Query: 484 MEHYGCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRALLA 524
              +GC +   A    L+   + +G    M Y     +  ALLA
Sbjct: 394 RATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 58/259 (22%)

Query: 463 GLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GL++ G ++F  M   Y + P  +HY CM+DLL R  RL+E                  A
Sbjct: 778 GLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG-----------------A 820

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL A R+H N ++GE A Q    + P +                      + K M D G+
Sbjct: 821 LLGASRIHGNTELGEKAAQMFFKMGPQNSG--------------------ISK-MRDVGV 859

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           QK PG+S+ E    +H F        + + I   L+++ +K++                E
Sbjct: 860 QKVPGYSWFEVQNKIHTFSVGLFLSRERENIGF-LEELDLKMRER--------------E 904

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRI-TKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEKE  + Y SE LA A G++        R+  K + +C DC  A K +S+I  R I +R
Sbjct: 905 EEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLR 964

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D+   H F +  CSC ++W
Sbjct: 965 DS---HRFNESICSCGEYW 980



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 139/300 (46%), Gaps = 31/300 (10%)

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+ Y +    N+A  +F  M   +   +W+ M++GY R  ++  AR+LFD M ++D+
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMP-ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDV 142

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW +++SGY+Q G   +A E+F  M       + ++   +L A V  G ++    L + 
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFES 198

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
             +  +   N  +       + +   +  A  +F K+P  ++    +N++ISG AQ G  
Sbjct: 199 KSDWDLISWNCLMGG-----FVRKKKLGDARWLFDKMP--VRDAISWNTMISGYAQGGGL 251

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH--YG 488
             +  +F E        D  T+  ++      G+++E K FF+ M      P+     Y 
Sbjct: 252 SQARRLFDESPTR----DVFTWTAMVSGYVQNGMLDEAKTFFDEM------PEKNEVSYN 301

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA-GQKLLDLEP 547
            M+    +  ++D A  L +SMP   N   W  ++         +IG+IA  +K  D+ P
Sbjct: 302 AMIAGYVQTKKMDIARELFESMPC-RNISSWNTMITGY-----GQIGDIAQARKFFDMMP 355


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/689 (36%), Positives = 389/689 (56%), Gaps = 59/689 (8%)

Query: 41  SSSQLISFFAL-SGCKN--GLFR-----SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEA 92
           SSS L S   + S CK   G FR     S   F  ID+ N      L+R    S +    
Sbjct: 8   SSSVLKSLLQIVSPCKRDLGSFRRLWQHSESTFCVIDDRN------LLRPSLNSKTGLHV 61

Query: 93  LVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
           L     ++  G + P+   +  +L  C +L   K G  +H H++    + DL I+N+L+ 
Sbjct: 62  L----DLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y+  G +  A ++F+    RD+VS+ ++I GYAQ      AL LF +M     +P+ FT
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
             ++   C  +     G+Q HA  +K  GC  SN+ + +++++MYA+C            
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWK-YGC-HSNVFVGSSLVDMYARC------------ 223

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                          GY  E  +     +FD++  ++ VSW A+I+GY++ G   +AL L
Sbjct: 224 ---------------GYLGEAML-----VFDKLGCKNEVSWNALIAGYARKGEGEEALAL 263

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV--VFGRNIFLTTAVIDM 390
           F +M+  G  P E T  A+L +C  +G L+ GK LH   +++   + G   ++   ++ M
Sbjct: 264 FVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVG---YVGNTLLHM 320

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           YAK GSI  A  VF K+ K +  VS  NS++ G AQHGLG+ +   F EM   G++P+ +
Sbjct: 321 YAKSGSIRDAEKVFDKLVK-VDVVSC-NSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDI 378

Query: 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           TF++VL ACSH  L++EGK +F  M  Y I+P++ HY  +VDLL R G LD+A   I+ M
Sbjct: 379 TFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEM 438

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P +    IW ALL A ++H+N ++G  A Q++ +L+P +   + LL+N+ A   RWE+  
Sbjct: 439 PIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVA 498

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VRK+M DSG++K P  S++E   ++H F+A+  +HPQ ++I  M + +  K+K  GYVP
Sbjct: 499 KVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVP 558

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +T  V+  VD++EKE  + YHSEKLAL+F L+N+    TIRI KN+R+CGDCH A K +S
Sbjct: 559 DTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVS 618

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + +REI+VRD  RFH F  G CSC D+W
Sbjct: 619 LVVKREIIVRDTNRFHHFCDGFCSCGDYW 647


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/621 (37%), Positives = 360/621 (57%), Gaps = 39/621 (6%)

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           L  G ++P    +   + +CA+  +     +IH H+     E D F+ N+LIH Y   G 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGS 101

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +  AHKVF+    +D+VS+ +LI GYAQ   P  A+ L   M     +P+ FTF ++  A
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 220 CTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
                D  IG Q HA+  K   C    ++ + +A+++MYA+CG M+MA  VF  +  SK+
Sbjct: 162 AGAYADSGIGGQIHALAVK---CDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKN 217

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W+++ISG+ R+G  E                                AL +F +M+ 
Sbjct: 218 GVSWNALISGFARKGDGE-------------------------------TALMVFAEMQR 246

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G      T  ++     G+GAL+ GK +H   +++       F+   ++DMYAK GS+ 
Sbjct: 247 NGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQ-KLTAFVGNTMLDMYAKSGSMI 305

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF ++    K +  +NS+++  AQ+GLG+ +++ F EM   G+  + +TF+ +L A
Sbjct: 306 DARKVFERVLN--KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTA 363

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           CSHGGLV+EGK +F+ +  Y ++P++EHY  +VDLL R G L+ A   I  MP +  + +
Sbjct: 364 CSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAV 423

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W ALLAACR+H+NAK+G+ A   +  L+PD     VLL N+ A T  W+ A +VRK+M  
Sbjct: 424 WGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKA 483

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
           +G++K P  S++E   ++H F+A+  +HP+ +EI  M  +++MK++  GYVP+   V+  
Sbjct: 484 TGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLH 543

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           VDE+E+E  + YHSEK+ALAF LI   +  TIRI KN+RICGDCH AFK +S+++ REI+
Sbjct: 544 VDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIV 603

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD  RFH F  G+CSC D+W
Sbjct: 604 VRDTNRFHHFSNGSCSCGDYW 624



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 203/445 (45%), Gaps = 56/445 (12%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNG-LFRSRILFSQ 67
           A + +C   K+L  A +IHG +  S         + LI  +    CK G +  +  +F +
Sbjct: 56  AFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLY----CKCGSVVEAHKVFDK 111

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   ++  W +L+ GY+++D P EA+ L   ML KG   PN FTF  +L +    +    
Sbjct: 112 MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSGI 170

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH   +K     D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI+G+A+
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN----LGCV 243
             +   AL +F +MQ +  +   FT+ ++FS    +     GK  HA + K+       V
Sbjct: 231 KGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFV 290

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G+ ML      +MYAK G M  A +VF  + ++K    W+SM                  
Sbjct: 291 GNTML------DMYAKSGSMIDARKVFERV-LNKDLVTWNSM------------------ 325

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                        ++ ++Q G   +A+  F +M   GI+ +++T + +L AC   G +  
Sbjct: 326 -------------LTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKE 372

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK      I+       I     V+D+  + G ++ AL   +K+P    T +++ ++++ 
Sbjct: 373 GKHYFDM-IKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPME-PTAAVWGALLAA 430

Query: 424 LAQHGLGETSIAVFREMELMGLKPD 448
              H      +  F    +  L PD
Sbjct: 431 CRMH--KNAKVGQFAADHVFQLDPD 453



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 26  QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           QIH   V    +  +   S L+  +A  G  +    +  +F ++D+ N   WN L+ G++
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMD---MATAVFDKLDSKNGVSWNALISGFA 229

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R    + AL+++  M   G     +FT+  + +  A + + + G  +H H++K   +   
Sbjct: 230 RKGDGETALMVFAEMQRNGF-EATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA 288

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N ++  Y+  G + +A KVFE  L +DLV++N+++  +AQ      A+  F +M+ S
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLM 263
            I  +  TF+ + +AC+     + GK +  ++ + NL      +     V+++  + GL+
Sbjct: 349 GIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNL---EPEIEHYVTVVDLLGRAGLL 405

Query: 264 NMAERVFSTMGMSKSTAAWSSMISG--YTREGKIER--ARQLFDQMDQRDLVSWTAMISG 319
           N A      M M  + A W ++++     +  K+ +  A  +F Q+D  D      + + 
Sbjct: 406 NYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVF-QLDPDDSGPPVLLYNI 464

Query: 320 YSQVGGFSQALELFGKMESLGI 341
           Y+  G +  A  +   M++ G+
Sbjct: 465 YASTGHWDAAARVRKMMKATGV 486


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/743 (34%), Positives = 411/743 (55%), Gaps = 53/743 (7%)

Query: 18  CKS--LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
           CKS  L  A Q+  +I        I+ + ++S +  SG    L RS    + +   +  +
Sbjct: 60  CKSSELDYARQLFDEISEP---DKIARTTMVSGYCASG-DIALARSVFEETPVSMRDTVM 115

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-QIHCH 134
           +N ++ G+S ++    A+ L+  M  +G   P++FT+  VL   A +   +  C Q H  
Sbjct: 116 YNAMITGFSHNNDGYSAINLFCKMKHEGF-KPDDFTYASVLAGLALVVDDEKQCVQFHAA 174

Query: 135 IIKFGLEFDLFIRNALIHFYSIFG----YINNAHKVFEGSLARD---------------- 174
            +K G  +   + NAL+  YS        +++A KVF+    +D                
Sbjct: 175 ALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGC 234

Query: 175 ----------------LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
                           LV+YN +I+GY        AL + R+M  S I+ D FT+ ++  
Sbjct: 235 FDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIR 294

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC      ++GKQ HA V +       +     +++ +Y KCG  N A  +F  M  +K 
Sbjct: 295 ACANARLLQLGKQVHAYVLRR---EDFSFHFDNSLVTLYYKCGKFNEARAIFEKMP-AKD 350

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W++++SGY   G I  A+ +F +M +++++SW  MISG ++ G   + L+LF  M+ 
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G  P +      +++C  LGA   G++ H Q ++ + F  ++    A+I MYAKCG ++
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVK-IGFDSSLSAGNALITMYAKCGVVE 469

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF  +P  L +VS +N++I+ L QHG G  ++ V+ EM   G++PD +TF+TVL A
Sbjct: 470 EAQQVFRTMP-CLDSVS-WNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTA 527

Query: 459 CSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV++G+++F SM   Y I P  +HY  ++DLL R G+  EA  +I+S+P+   + 
Sbjct: 528 CSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAE 587

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           IW ALL+ CR+H N ++G IA  KL  L P+H   Y+LLSNM A T +WEE  +VRKLM 
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMR 647

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D G++K    S+IE    +H FL    SHP+ + +   L+D+  +++  GYVP+T  V+ 
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLH 707

Query: 638 DVDEE-EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
           DV+ +  KE +++ HSEK+A+AFGL+      TIRI KNLR CGDCH  F+ LS++ +R+
Sbjct: 708 DVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRD 767

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I++RD  RFH F+ G CSC +FW
Sbjct: 768 IILRDRKRFHHFRNGECSCGNFW 790



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 155/340 (45%), Gaps = 19/340 (5%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +SL+ L   C    +A  I  ++    L   +S + L+S +  SG    +  ++++F ++
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDL---VSWNALLSGYVSSG---HIGEAKLIFKEM 377

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              NI  W  ++ G + +   +E L L++ M  +G   P ++ F   + SCA L ++ +G
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF-EPCDYAFSGAIKSCAVLGAYCNG 436

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q H  ++K G +  L   NALI  Y+  G +  A +VF      D VS+N LI    Q 
Sbjct: 437 QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQH 496

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH---AVVYKNLGCVGS 245
                A+ ++ +M    I+PD  TF+ + +AC+       G+++      VY+    +  
Sbjct: 497 GHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYR----IPP 552

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQL 301
                  +I++  + G  + AE +  ++    +   W +++SG    G +E     A +L
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           F  + + D  ++  + + Y+  G + +   +   M   G+
Sbjct: 613 FGLIPEHD-GTYMLLSNMYAATGQWEEVARVRKLMRDRGV 651



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 187/406 (46%), Gaps = 60/406 (14%)

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--MDQRDL 310
           +I++Y K   ++ A ++F  +       A ++M+SGY   G I  AR +F++  +  RD 
Sbjct: 55  LIDVYCKSSELDYARQLFDEIS-EPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDT 113

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQ 369
           V + AMI+G+S       A+ LF KM+  G  PD+ T  +VL    GL   +D  K+  Q
Sbjct: 114 VMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL---AGLALVVDDEKQCVQ 170

Query: 370 QYIENVVFGRNIF--LTTAVIDMYAKCGS----IDTALSVFYKIP--------------- 408
            +   +  G      ++ A++ +Y++C S    + +A  VF  IP               
Sbjct: 171 FHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYV 230

Query: 409 ----------------KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
                           +N+K V+ +N++ISG    GL + ++ + R M   G++ D  T+
Sbjct: 231 KNGCFDLGKELLKGMDENMKLVA-YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTY 289

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY-GCMVDLLARDGRLDEAYGLIQSMP 511
            +V+ AC++  L++ GKQ    +L    +    H+   +V L  + G+ +EA  + + MP
Sbjct: 290 PSVIRACANARLLQLGKQVHAYVLRR--EDFSFHFDNSLVTLYYKCGKFNEARAIFEKMP 347

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLL--DLEPDHGAHYVLLSNMLAETYRWEEA 569
              + V W ALL+          G I   KL+  +++  +   ++++ + LAE    EE 
Sbjct: 348 AK-DLVSWNALLSG-----YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEG 401

Query: 570 RQVRKLMDDSGIQKPPGWSY---IEHNGTLHRFLASKKSHPQTKEI 612
            ++   M   G + P  +++   I+    L  +   ++ H Q  +I
Sbjct: 402 LKLFSCMKREGFE-PCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI 446



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 17/161 (10%)

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           A  + G + + G  P    +  ++        LD+ ++L  +  E     R     T ++
Sbjct: 33  ARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIAR-----TTMV 87

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
             Y   G I  A SVF + P +++   ++N++I+G + +  G ++I +F +M+  G KPD
Sbjct: 88  SGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 449 GVTFVTVL------------CACSHGGLVEEGKQFFESMLN 477
             T+ +VL            C   H   ++ G  +  S+ N
Sbjct: 148 DFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSN 188


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/665 (36%), Positives = 390/665 (58%), Gaps = 12/665 (1%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R+R LF  I  P+    +TL+   +      EA+ +Y+S+  +GI  P+   F     +C
Sbjct: 30  RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI-KPDMPVFLAAAKAC 88

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A         ++H    + G+  D+F+ NALIH Y     +  A +VF+  + RD+VS+ 
Sbjct: 89  AVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWT 148

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +L + Y +   P   + +FR+M  S ++P+  T  ++  AC EL D + GK+ H    ++
Sbjct: 149 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 208

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              V  N+ + +A++++YAKC  +  A  VF  M   +   +W+ +++ Y +  + E+  
Sbjct: 209 GMVV--NLFVCSALVSLYAKCLSVREARMVFDLMP-HRDVVSWNGVLTAYFKNKEYEKGF 265

Query: 300 QLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            LF +M +     D  +W A+I G  + G   +A+E+F KM+ +G  P+E+T+ ++L AC
Sbjct: 266 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 325

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
                L  GK +H     +   G ++  TTA++ MYAKCG ++ + +VF  + +  K V 
Sbjct: 326 SFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLSRNVFDMMRR--KDVV 382

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N++I   A HG G+ ++ +F +M L  ++P+ VTF  VL  CSH  LVEEG Q F SM
Sbjct: 383 AWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSM 442

Query: 476 -LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
             ++ ++P   HY C+VD+ +R GRL+EAY  IQ MP +  +  W ALLAACR+++N ++
Sbjct: 443 GRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVEL 502

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            +I+ +KL ++EP++  +YV L N+L     W EA QVR LM + GI K PG S+++   
Sbjct: 503 AKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGN 562

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F+   KS+ ++ +I   L ++  K+K AGY P+T  V+ D+D+EEK   +  HSEK
Sbjct: 563 KVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEK 622

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFG++N   + TIR+ KNLRICGDCH A K +S++    I+VRD++RFH FK GNCS
Sbjct: 623 LAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCS 682

Query: 715 CMDFW 719
           C D W
Sbjct: 683 CKDLW 687



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G   RARQLFD + Q D  + + +IS  +  G  ++A++++  ++  GI PD    +A  
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC   G     K +H       V   ++F+  A+I  Y KC  ++ A  VF  +   ++
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMS-DVFVGNALIHAYGKCKCVEGARRVFDDLV--VR 142

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + S+ S   + G     + VFREM   G+KP+ +T  ++L AC+    ++ GK+  
Sbjct: 143 DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIH 202

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              + +G+   +     +V L A+   + EA  +   MP+  + V W  +L A
Sbjct: 203 GFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPH-RDVVSWNGVLTA 254


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/665 (36%), Positives = 390/665 (58%), Gaps = 12/665 (1%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R+R LF  I  P+    +TL+   +      EA+ +Y+S+  +GI  P+   F     +C
Sbjct: 116 RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI-KPDMPVFLAAAKAC 174

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A         ++H    + G+  D+F+ NALIH Y     +  A +VF+  + RD+VS+ 
Sbjct: 175 AVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWT 234

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +L + Y +   P   + +FR+M  S ++P+  T  ++  AC EL D + GK+ H    ++
Sbjct: 235 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 294

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              V  N+ + +A++++YAKC  +  A  VF  M   +   +W+ +++ Y +  + E+  
Sbjct: 295 GMVV--NLFVCSALVSLYAKCLSVREARMVFDLMP-HRDVVSWNGVLTAYFKNKEYEKGF 351

Query: 300 QLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            LF +M +     D  +W A+I G  + G   +A+E+F KM+ +G  P+E+T+ ++L AC
Sbjct: 352 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 411

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
                L  GK +H     +   G ++  TTA++ MYAKCG ++ + +VF  + +  K V 
Sbjct: 412 SFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLSRNVFDMMRR--KDVV 468

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N++I   A HG G+ ++ +F +M L  ++P+ VTF  VL  CSH  LVEEG Q F SM
Sbjct: 469 AWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSM 528

Query: 476 -LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
             ++ ++P   HY C+VD+ +R GRL+EAY  IQ MP +  +  W ALLAACR+++N ++
Sbjct: 529 GRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVEL 588

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            +I+ +KL ++EP++  +YV L N+L     W EA QVR LM + GI K PG S+++   
Sbjct: 589 AKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGN 648

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F+   KS+ ++ +I   L ++  K+K AGY P+T  V+ D+D+EEK   +  HSEK
Sbjct: 649 KVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEK 708

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFG++N   + TIR+ KNLRICGDCH A K +S++    I+VRD++RFH FK GNCS
Sbjct: 709 LAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCS 768

Query: 715 CMDFW 719
           C D W
Sbjct: 769 CKDLW 773



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G   RARQLFD + Q D  + + +IS  +  G  ++A++++  ++  GI PD    +A  
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC   G     K +H       V   ++F+  A+I  Y KC  ++ A  VF  +   ++
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMS-DVFVGNALIHAYGKCKCVEGARRVFDDLV--VR 228

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + S+ S   + G     + VFREM   G+KP+ +T  ++L AC+    ++ GK+  
Sbjct: 229 DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIH 288

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              + +G+   +     +V L A+   + EA  +   MP+  + V W  +L A
Sbjct: 289 GFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPH-RDVVSWNGVLTA 340


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/660 (36%), Positives = 383/660 (58%), Gaps = 24/660 (3%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   ++  WN+L+ GY+++    EA  ++ +M  K  +S N     +V N   
Sbjct: 130 ARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN--G 187

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           R+          C + +   ++DL   N L+  +     + +A  +F+    RD +S+NT
Sbjct: 188 RIEE-------ACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT 240

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GYAQ      A    R++ D     D FT+ AM S   +       K F   + +  
Sbjct: 241 MISGYAQGGGLSQA----RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE-- 294

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                N +   A+I  Y +   M++A  +F +M   ++ ++W++MI+GY + G I +AR+
Sbjct: 295 ----KNEVSYNAMIAGYVQTKKMDIARELFESMP-CRNISSWNTMITGYGQIGDIAQARK 349

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
            FD M QRD VSW A+I+GY+Q G + +AL +F +++  G   +  T    L  C  + A
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L+ GK++H Q ++ + +G   F+  A++ MY KCGSID A   F  I +  K V  +N++
Sbjct: 410 LELGKQIHGQAVK-MGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEE--KDVVSWNTM 466

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYG 479
           ++G A+HG G  ++ VF  M+  G+KPD +T V VL ACSH GL++ G ++F SM  +YG
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P  +HY CM+DLL R GRL+EA  LI++MP+   +  W ALL A R+H N ++GE A 
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           + +  +EP +   YVLLSN+ A + RW +A ++R  M D G+QK PG+S++E    +H F
Sbjct: 587 EMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTF 646

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
                SHP+ + I   L+++ +K++  GYV  T  V+ DV+EEEKE ++ YHSEKLA+AF
Sbjct: 647 SVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAF 706

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           G++       IR+ KNLR+C DCH A K +S+I  R I++RD+ RFH F +G CSC D+W
Sbjct: 707 GILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 177/411 (43%), Gaps = 62/411 (15%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           IS + +IS +A  G   GL ++R LF +    ++F W  ++ GY ++    EA   +  M
Sbjct: 236 ISWNTMISGYAQGG---GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSS--FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
             K  VS N     +V      ++   F+S   + C  I           N +I  Y   
Sbjct: 293 PEKNEVSYNAMIAGYVQTKKMDIARELFES---MPCRNISSW--------NTMITGYGQI 341

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G I  A K F+    RD VS+  +I GYAQ      AL +F +++      +  TF    
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           S C ++    +GKQ H    K +G  G+   +  A++ MY KCG ++ A   F  +   K
Sbjct: 402 STCADIAALELGKQIHGQAVK-MG-YGTGCFVGNALLAMYFKCGSIDEANDTFEGI-EEK 458

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
              +W++M++GY R G        F +                       QAL +F  M+
Sbjct: 459 DVVSWNTMLAGYARHG--------FGR-----------------------QALTVFESMK 487

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT----TAVIDMYAK 393
           + G+ PDE+TMV VL AC   G LD G     +Y  ++     +  T    T +ID+  +
Sbjct: 488 TAGVKPDEITMVGVLSACSHTGLLDRG----TEYFYSMTKDYGVIPTSKHYTCMIDLLGR 543

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREME 441
            G ++ A  +   +P      S + +++     HG   LGE +  +  +ME
Sbjct: 544 AGRLEEAQDLIRNMPFQPGAAS-WGALLGASRIHGNTELGEKAAEMVFKME 593



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 191/464 (41%), Gaps = 75/464 (16%)

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++ +P+I  WN  +  + R+     AL ++ +M  +  VS N     ++ NS        
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS-------- 94

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
                     KF L                      A  +F+    RDL S+N ++ GY 
Sbjct: 95  ----------KFNL----------------------ARNLFDQMPERDLFSWNVMLTGYV 122

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCV 243
           +      A    R++ D   + D  ++ ++ S   +   +++ R  + F  +  KN   +
Sbjct: 123 RNCRLGDA----RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR--EVFDNMPEKN--SI 174

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N LL   V N     G +  A  +F +        +W+ ++ G+ R+ K+  AR LFD
Sbjct: 175 SWNGLLAAYVHN-----GRIEEACLLFESKS-DWDLISWNCLMGGFVRKKKLGDARWLFD 228

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M  RD +SW  MISGY+Q GG SQA  LF +  +     D  T  A++   V  G LD 
Sbjct: 229 KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT----RDVFTWTAMVSGYVQNGMLDE 284

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            K    +  E     +N     A+I  Y +   +D A  +F  +P   + +S +N++I+G
Sbjct: 285 AKTFFDEMPE-----KNEVSYNAMIAGYVQTKKMDIARELFESMP--CRNISSWNTMITG 337

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             Q G     IA  R+   M  + D V++  ++   +  G  EE    F  +   G    
Sbjct: 338 YGQIG----DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393

Query: 484 MEHYGCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRALLA 524
              +GC +   A    L+   + +G    M Y     +  ALLA
Sbjct: 394 RATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 139/300 (46%), Gaps = 31/300 (10%)

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+ Y +    N+A  +F  M   +   +W+ M++GY R  ++  AR+LFD M ++D+
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMP-ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDV 142

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW +++SGY+Q G   +A E+F  M       + ++   +L A V  G ++    L + 
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFES 198

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
             +  +   N  +       + +   +  A  +F K+P  ++    +N++ISG AQ G  
Sbjct: 199 KSDWDLISWNCLMGG-----FVRKKKLGDARWLFDKMP--VRDAISWNTMISGYAQGGGL 251

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH--YG 488
             +  +F E        D  T+  ++      G+++E K FF+ M      P+     Y 
Sbjct: 252 SQARRLFDESPTR----DVFTWTAMVSGYVQNGMLDEAKTFFDEM------PEKNEVSYN 301

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA-GQKLLDLEP 547
            M+    +  ++D A  L +SMP   N   W  ++         +IG+IA  +K  D+ P
Sbjct: 302 AMIAGYVQTKKMDIARELFESMPC-RNISSWNTMITGY-----GQIGDIAQARKFFDMMP 355


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/689 (37%), Positives = 383/689 (55%), Gaps = 47/689 (6%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRI---LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           IS   + SF A+        R  I   LF QI  P++  +NTL+  Y+       AL L+
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
           + M   G+   + FT   V+ +C          Q+H   +  G +  + + NAL+ +Y  
Sbjct: 129 SGMREMGL-DMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 157 FGYINNAHKVFEGSLA-RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
            G +++A +VF G    RD VS+N++I  Y Q +E   AL LF++M    +  D FT  +
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + +A T L D   G QFH  + K       N  + + +I++Y+KCG              
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKT--GFHQNSHVGSGLIDLYSKCG-------------- 289

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF-SQALELFG 334
                            G +   R++F+++ + DLV W  M+SGYSQ   F   ALE F 
Sbjct: 290 -----------------GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           +M+ +G  P++ + V V+ AC  L +   GK++H   +++ +    I +  A+I MY+KC
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G++  A  +F ++ ++  TVSL NS+I+G AQHG+   S+ +F+ M    + P  +TF++
Sbjct: 393 GNLQDARRLFDRMAEH-NTVSL-NSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFIS 450

Query: 455 VLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           VL AC+H G VEEG  +F  M   + I+P+ EHY CM+DLL R G+L EA  LI  MP++
Sbjct: 451 VLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFN 510

Query: 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573
             S+ W +LL ACR H N ++   A  ++L LEP + A YV+LSNM A   RWEE   VR
Sbjct: 511 PGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVR 570

Query: 574 KLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
           K M D G++K PG S+IE    +H F+A   SHP  KEI   L++M+ K+K AGYVP+  
Sbjct: 571 KFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVR 630

Query: 634 QVVFDVDEE---EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
             +   D     EKE  + +HSEKLA+AFGLI+++  E + + KNLRICGDCH A K +S
Sbjct: 631 WALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFIS 690

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            I  REI VRDA RFH FK+G CSC D+W
Sbjct: 691 AIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 207/438 (47%), Gaps = 52/438 (11%)

Query: 98  SMLSKGIVSPNNF---TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           S+  K  + P+ +    F  + + C RL+  +   Q          + ++F  NA+I  Y
Sbjct: 32  SLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS-------DPNVFSFNAIIAAY 84

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           +       AH++F+     DLVSYNTLI+ YA   E  PAL LF  M++  +  D FT  
Sbjct: 85  AKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLS 144

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           A+ +AC +  D  +  Q H+V   +     S + +  A++  Y K G ++ A+RVF  MG
Sbjct: 145 AVITACCD--DVGLIGQLHSVAVSS--GFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG 200

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             +   +W+SMI  Y                             G  Q G  S+AL LF 
Sbjct: 201 GIRDEVSWNSMIVAY-----------------------------GQHQEG--SKALGLFQ 229

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           +M   G++ D  T+ +VL A   L  L  G + H Q I+   F +N  + + +ID+Y+KC
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK-TGFHQNSHVGSGLIDLYSKC 288

Query: 395 -GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPDGVTF 452
            G +     VF +I +    + L+N+++SG +Q+    E ++  FR+M+ +G +P+  +F
Sbjct: 289 GGGMSDCRKVFEEITE--PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSF 346

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           V V+ ACS+     +GKQ     L   I   ++     ++ + ++ G L +A  L   M 
Sbjct: 347 VCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA 406

Query: 512 YDANSVIWRALLAACRLH 529
            + N+V   +++A    H
Sbjct: 407 -EHNTVSLNSMIAGYAQH 423



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 169/340 (49%), Gaps = 12/340 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L      + L   LQ HGQ++ +G   N H+ S  LI  +  S C  G+   R +F 
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSG-LIDLY--SKCGGGMSDCRKVFE 300

Query: 67  QIDNPNIFIWNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +I  P++ +WNT++ GYS+++   ++AL  +  M   G   PN+ +F  V+++C+ LSS 
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG-YRPNDCSFVCVISACSNLSSP 359

Query: 126 KSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G QIH   +K  +  + + + NALI  YS  G + +A ++F+     + VS N++I G
Sbjct: 360 SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAG 419

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ      +L LF+ M +  I P + TF+++ SAC        G  +  ++ +    + 
Sbjct: 420 YAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN-IE 478

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD- 303
                 + +I++  + G ++ AE + + M  +  +  W+S++      G IE A +  + 
Sbjct: 479 PEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 304 --QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             Q++  +   +  + + Y+  G + +   +   M   G+
Sbjct: 539 VLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGV 578


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/715 (34%), Positives = 406/715 (56%), Gaps = 47/715 (6%)

Query: 10  SLLALLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           + + +L+ C  L Q     ++H  ++  G   +I  + L+  +A  G  +   R   +F 
Sbjct: 267 TTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALR---VFR 323

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +I + +   WN+++  Y ++    EA+  +  M+  G  +P++     +L++   L    
Sbjct: 324 EIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGF-NPDHACIVSLLSAVGHLGRLI 382

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G ++H + +K  L+ DL I N L+  Y     +  + +VF+    +D VS+ T+I  YA
Sbjct: 383 NGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYA 442

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+  FR  Q   I+ D     ++  AC+ L    + KQ H+   +N G +  +
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRN-GLL--D 499

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++LK  +I++Y +CG                                ++  A  +F+ +D
Sbjct: 500 LILKNRIIDIYGECG--------------------------------EVCYALNIFEMLD 527

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++D+V+WT+M++ +++ G   +A+ LFGKM + GI PD V +V +L A  GL +L  GK 
Sbjct: 528 KKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKE 587

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   I    F     + ++++DMY+ CGS++ AL VF +     K V L+ ++I+    
Sbjct: 588 IHGFLIRGK-FPVEGAVVSSLVDMYSGCGSMNYALKVFDE--AKCKDVVLWTAMINATGM 644

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           HG G+ +I +F+ M   G+ PD V+F+ +L ACSH  LV+EGK + + M++ Y ++P  E
Sbjct: 645 HGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQE 704

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C+VDLL R G+ +EAY  I+SMP +  SV+W ALL ACR+H+N ++  IA  KLL+L
Sbjct: 705 HYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLEL 764

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           EPD+  +YVL+SN+ AE  +W   +++R  M + G++K P  S+IE   T+H F A   S
Sbjct: 765 EPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHS 824

Query: 606 HPQTKEIELMLKDMTMKLKSAG-YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           H  ++ I L L ++T KL+  G YV +T  V+ DV EEEK  ++  HSE+LA++FGLI++
Sbjct: 825 HRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLIST 884

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            S   +RI KNLR+CGDCH   KL+S+++ REI+VRDA RFH F  G CSC DFW
Sbjct: 885 ASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 210/456 (46%), Gaps = 45/456 (9%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLFRSRILFSQI 68
           +L L+   +++ +  Q+H   V +G      +  L +   F    C   L  +  LF  +
Sbjct: 61  VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGR-LPDAHRLFDGM 119

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS---PNNFTFPFVLNSCARLSSF 125
               +F WN L+     S    EA+ +Y +M +   V+   P+  T   VL +C      
Sbjct: 120 PARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDG 179

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-ARDLVSYNTLING 184
           + G ++H   +K GL+    + NAL+  Y+  G +++A +VFE     RD+ S+N+ I+G
Sbjct: 180 RCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISG 239

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
             Q      AL LFR+MQ      +++T V +   C EL     G++ HA + K   C  
Sbjct: 240 CVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLK---CGT 296

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
              +   A++ MYA+CG ++ A RV                                F +
Sbjct: 297 EFNIQCNALLVMYARCGWVDSALRV--------------------------------FRE 324

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  +D +SW +M+S Y Q   +++A++ FG+M   G +PD   +V++L A   LG L  G
Sbjct: 325 IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +H  Y        ++ +   ++DMY KC S++ +  VF ++   +K    + +II+  
Sbjct: 385 REVH-AYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRM--RIKDHVSWTTIIACY 441

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
           AQ      +I  FR  +  G+K D +   ++L ACS
Sbjct: 442 AQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 189/414 (45%), Gaps = 50/414 (12%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           +R   +    +EAL    +  ++G   P    + +VL+  A   +   G Q+H H +  G
Sbjct: 26  LRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATG 85

Query: 140 LEFDL---FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
              D    F+   L+  Y   G + +AH++F+G  AR + S+N LI           A+ 
Sbjct: 86  ALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVG 145

Query: 197 LFRKMQDS----CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
           ++R M+ S       PD  T  ++  AC    D R G + H +  K+   +  + L+  A
Sbjct: 146 VYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKS--GLDRSTLVANA 203

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++ MYAKCGL++ A RVF  M   +  A+W+S ISG                        
Sbjct: 204 LVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCV---------------------- 241

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                    Q G F +AL+LF +M+S G   +  T V VL+ C  L  L+ G+ LH   +
Sbjct: 242 ---------QNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 373 E-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +    F  NI    A++ MYA+CG +D+AL VF +I    K    +NS++S   Q+ L  
Sbjct: 293 KCGTEF--NI-QCNALLVMYARCGWVDSALRVFREIGD--KDYISWNSMLSCYVQNRLYA 347

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
            +I  F EM   G  PD    V++L A  H G +  G++       Y +K +++
Sbjct: 348 EAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHA----YAVKQRLD 397


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/739 (34%), Positives = 419/739 (56%), Gaps = 73/739 (9%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGC---KNGLFRSRILFSQIDNPNIFIWNTLMRG 82
           Q+H QI+H+ L+HH     L+    ++ C   +     + +LF+   NPN+F++ +++R 
Sbjct: 19  QLHAQIIHNSLHHHNYWVALL----INHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           YS      + +++Y  M   G V P+ F +P ++ S         G   H H++K G   
Sbjct: 75  YSHLQDHAKVVLMYEQMQGCG-VRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGS 128

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D F+RNA+I  Y+  G I +A KVF+      R +  +N +++GY + +    A WLF  
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDV 188

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK-TAVINMYAK 259
           M +     +  T+ AM +   ++ D    +++         C+    ++   A+++ YA+
Sbjct: 189 MPER----NVITWTAMVTGYAKVKDLEAARRY-------FDCMPERSVVSWNAMLSGYAQ 237

Query: 260 CGLMNMAERVFSTM---GMSKSTAAWSSMISG---------------------------- 288
            GL   A R+F  M   G+      W ++IS                             
Sbjct: 238 NGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFV 297

Query: 289 -------YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLG 340
                  Y + G ++ AR+LF+ M  R++V+W +MI+GY+Q G  + A+ELF +M  +  
Sbjct: 298 RTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 357

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PDEVTMV+V+ AC  LGAL+ G  + +   EN +   +I    A+I MY++CGS++ A
Sbjct: 358 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQI-KLSISGHNAMIFMYSRCGSMEDA 416

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             VF ++    + V  +N++ISG A HG G  +I +   M+  G++PD VTF+ VL ACS
Sbjct: 417 KRVFQEMAT--RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACS 474

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           H GL+EEG++ FES+ +    P ++HY CMVDLL R G L++A   ++ MP + ++ ++ 
Sbjct: 475 HAGLLEEGRKVFESIKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYG 530

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           +LL A R+H+  ++GE+A  KL +LEPD+  +++LLSN+ A   RW++  ++R+ M   G
Sbjct: 531 SLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGG 590

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           ++K  GWS++E+ G LH+F+ + +SH ++ +I  +L ++  K++ AGY+ +   V+ DV+
Sbjct: 591 VKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVE 650

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEEKE +V  HSEKLA+ + L+ S +   IR+ KNLR+C DCH A K++S++  R I+VR
Sbjct: 651 EEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVR 710

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH F  G CSC D+W
Sbjct: 711 DNNRFHCFNDGLCSCKDYW 729



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 249/504 (49%), Gaps = 58/504 (11%)

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI-HFYSIFGYINNAHKVFEGSLARDLVSY 178
           +R+ +F    Q+H  II   L    +    LI H   +    +  H +F  +L  ++  +
Sbjct: 9   SRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVF 68

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF-VAMFSACTELNDPRIGKQFHAVVY 237
            +++  Y+ +++    + ++ +MQ   ++PDAF + + + SA T       G  FHA V 
Sbjct: 69  TSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG------GIGFHAHVL 122

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSSMISGYTREGKIE 296
           K LG  GS+  ++ AVI+MYA+ G +  A +VF  +    +  A W++M+SGY +     
Sbjct: 123 K-LGH-GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEG 180

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQV-------------------------GGFSQ--- 328
           +A+ LFD M +R++++WTAM++GY++V                          G++Q   
Sbjct: 181 QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGL 240

Query: 329 ---ALELFGKMESLGIHPDEVTMVAVLRACVGLG----ALDFGKRLHQQYIENVVFGRNI 381
              AL LF +M + GI PDE T V V+ AC   G    A    + LHQ+ I+      N 
Sbjct: 241 AEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQ-----LNC 295

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM- 440
           F+ TA++DMYAK G +D+A  +F  +P   + V  +NS+I+G AQ+G    +I +F+EM 
Sbjct: 296 FVRTALLDMYAKFGDLDSARKLFNTMPG--RNVVTWNSMIAGYAQNGQSAMAIELFKEMI 353

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
               L PD VT V+V+ AC H G +E G      +    IK  +  +  M+ + +R G +
Sbjct: 354 TAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSM 413

Query: 501 DEAYGLIQSMPYDANSVIWRALLA--ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           ++A  + Q M    + V +  L++  A   H    I  ++  K   +EPD    ++ +  
Sbjct: 414 EDAKRVFQEMA-TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR-VTFIGVLT 471

Query: 559 MLAETYRWEEARQVRKLMDDSGIQ 582
             +     EE R+V + + D  I 
Sbjct: 472 ACSHAGLLEEGRKVFESIKDPAID 495


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 361/606 (59%), Gaps = 41/606 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           ++ +CAR  S      IH H+        +F+ N+LIH Y   G + +A +VF+G  ARD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           + S+ +LI GYAQ   P  AL L   M     +P+ FTF ++  A        IG+Q HA
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +  K       ++ + +A+++MYA+CG                                +
Sbjct: 190 LTVKYDW--HDDVYVGSALLDMYARCG--------------------------------R 215

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           ++ A  +FDQ++ ++ VSW A+I+G+++ G     L +F +M+  G      T  +V  A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
             G+GAL+ GK +H   I++   G  +  F+   ++DMYAK GS+  A  VF ++ K  K
Sbjct: 276 IAGIGALEQGKWVHAHMIKS---GERLSAFVGNTILDMYAKSGSMIDARKVFDRVDK--K 330

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +NS+++  AQ+GLG  ++  F EM   G+  + +TF+++L ACSHGGLV+EGKQ+F
Sbjct: 331 DVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF 390

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           + M  Y ++P+++HY  +VDLL R G L++A   I  MP    + +W ALL +CR+H+NA
Sbjct: 391 DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNA 450

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           KIG+ A   + +L+PD     VLL N+ A T +W+ A +VRK+M  +G++K P  S++E 
Sbjct: 451 KIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEI 510

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
             ++H F+A+  +HP+++EI    ++++++++ AGYVPNT  V+  VDE+E++  + YHS
Sbjct: 511 ENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHS 570

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EK+ALAF LIN     TIRI KN+RICGDCH AF+ +S++++REI+VRD  RFH F  G+
Sbjct: 571 EKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGS 630

Query: 713 CSCMDF 718
           CSC D+
Sbjct: 631 CSCGDY 636



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 206/444 (46%), Gaps = 47/444 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG-LFRSRILF 65
           + SL+      +SL  A  IH  +  S     +   + LI  +    CK G +  +R +F
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLY----CKCGAVADARRVF 122

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   ++  W +L+ GY+++D P EAL L   ML +G   PN FTF  +L +    +S 
Sbjct: 123 DGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGASASS 181

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G QIH   +K+    D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI G+
Sbjct: 182 GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF 241

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +    L +F +MQ +  +   FT+ ++FSA   +     GK  HA + K+   + +
Sbjct: 242 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
              +   +++MYAK G M  A +VF  +   K    W+SM                    
Sbjct: 302 --FVGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSM-------------------- 338

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                      ++ ++Q G   +A+  F +M   G+H +++T +++L AC   G +  GK
Sbjct: 339 -----------LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGK 387

Query: 366 RLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           +      E N+    + ++T  V+D+  + G ++ AL   +K+P    T +++ +++   
Sbjct: 388 QYFDMMKEYNLEPEIDHYVT--VVDLLGRAGLLNDALVFIFKMPMK-PTAAVWGALLGSC 444

Query: 425 AQHGLGETSIAVFREMELMGLKPD 448
             H      I  F    +  L PD
Sbjct: 445 RMH--KNAKIGQFAADHVFELDPD 466



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +++ AC    +LD  + +H  ++    F  ++FL  ++I +Y KCG++  A  VF  +P 
Sbjct: 69  SLITACARYRSLDDARAIHA-HLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPA 127

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + +  + S+I+G AQ+ + + ++ +   M     KP+G TF ++L A         G+
Sbjct: 128 --RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           Q     + Y     +     ++D+ AR GR+D A  +   +    N V W AL+A 
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE-SKNGVSWNALIAG 240


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/689 (37%), Positives = 383/689 (55%), Gaps = 47/689 (6%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRI---LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           IS   + SF A+        R  I   LF QI  P++  +NTL+  Y+       AL L+
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
           + M   G+   + FT   V+ +C          Q+H   +  G +  + + NAL+ +Y  
Sbjct: 129 SGMREMGL-DMDXFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 157 FGYINNAHKVFEGSLA-RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
            G +++A +VF G    RD VS+N++I  Y Q +E   AL LF++M    +  D FT  +
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + +A T L D   G QFH  + K       N  + + +I++Y+KCG              
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKT--GFHQNSHVGSGLIDLYSKCG-------------- 289

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF-SQALELFG 334
                            G +   R++F+++ + DLV W  M+SGYSQ   F   ALE F 
Sbjct: 290 -----------------GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           +M+ +G  P++ + V V+ AC  L +   GK++H   +++ +    I +  A+I MY+KC
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G++  A  +F ++ ++  TVSL NS+I+G AQHG+   S+ +F+ M    + P  +TF++
Sbjct: 393 GNLQDARRLFDRMAEH-NTVSL-NSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFIS 450

Query: 455 VLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           VL AC+H G VEEG  +F  M   + I+P+ EHY CM+DLL R G+L EA  LI  MP++
Sbjct: 451 VLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFN 510

Query: 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573
             S+ W +LL ACR H N ++   A  ++L LEP + A YV+LSNM A   RWEE   VR
Sbjct: 511 PGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVR 570

Query: 574 KLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
           K M D G++K PG S+IE    +H F+A   SHP  KEI   L++M+ K+K AGYVP+  
Sbjct: 571 KFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVR 630

Query: 634 QVVFDVDEE---EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
             +   D     EKE  + +HSEKLA+AFGLI+++  E + + KNLRICGDCH A K +S
Sbjct: 631 WALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFIS 690

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            I  REI VRDA RFH FK+G CSC D+W
Sbjct: 691 AIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 207/438 (47%), Gaps = 52/438 (11%)

Query: 98  SMLSKGIVSPNNF---TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           S+  K  + P+ +    F  + + C RL+  +   Q          + ++F  NA+I  Y
Sbjct: 32  SLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS-------DPNVFSFNAIIAAY 84

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           +       AH++F+     DLVSYNTLI+ YA   E  PAL LF  M++  +  D FT  
Sbjct: 85  AKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLS 144

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           A+ +AC +  D  +  Q H+V   +     S + +  A++  Y K G ++ A+RVF  MG
Sbjct: 145 AVITACCD--DVGLIGQLHSVAVSS--GFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG 200

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             +   +W+SMI  Y                             G  Q G  S+AL LF 
Sbjct: 201 GIRDEVSWNSMIVAY-----------------------------GQHQEG--SKALGLFQ 229

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           +M   G++ D  T+ +VL A   L  L  G + H Q I+   F +N  + + +ID+Y+KC
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK-TGFHQNSHVGSGLIDLYSKC 288

Query: 395 -GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPDGVTF 452
            G +     VF +I +    + L+N+++SG +Q+    E ++  FR+M+ +G +P+  +F
Sbjct: 289 GGGMSDCRKVFEEITE--PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSF 346

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           V V+ ACS+     +GKQ     L   I   ++     ++ + ++ G L +A  L   M 
Sbjct: 347 VCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA 406

Query: 512 YDANSVIWRALLAACRLH 529
            + N+V   +++A    H
Sbjct: 407 -EHNTVSLNSMIAGYAQH 423



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 169/340 (49%), Gaps = 12/340 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L      + L   LQ HGQ++ +G   N H+ S  LI  +  S C  G+   R +F 
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSG-LIDLY--SKCGGGMSDCRKVFE 300

Query: 67  QIDNPNIFIWNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +I  P++ +WNT++ GYS+++   ++AL  +  M   G   PN+ +F  V+++C+ LSS 
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG-YRPNDCSFVCVISACSNLSSP 359

Query: 126 KSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G QIH   +K  +  + + + NALI  YS  G + +A ++F+     + VS N++I G
Sbjct: 360 SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAG 419

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ      +L LF+ M +  I P + TF+++ SAC        G  +  ++ +    + 
Sbjct: 420 YAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN-IE 478

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD- 303
                 + +I++  + G ++ AE + + M  +  +  W+S++      G IE A +  + 
Sbjct: 479 PEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 304 --QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             Q++  +   +  + + Y+  G + +   +   M   G+
Sbjct: 539 VLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGV 578


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/713 (36%), Positives = 400/713 (56%), Gaps = 47/713 (6%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFR-SRILFSQI 68
           +LA      SL    Q+H   +  GL+  ++ S+ LI+ +    CK   F  +R +F  +
Sbjct: 321 MLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMY----CKLRKFGFARTVFDNM 376

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS- 127
              ++  WN+++ G +++    EA+ L+  +L  G+  P+ +T   VL + + L    S 
Sbjct: 377 SERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL-KPDQYTMTSVLKAASSLPEGLSL 435

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
             Q+H H IK     D F+  ALI  YS    +  A  +FE     DLV++N ++ GY Q
Sbjct: 436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAGYTQ 494

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +    L LF  M     + D FT   +F  C  L     GKQ HA   K+      ++
Sbjct: 495 SHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS--GYDLDL 552

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + + +++MY KCG M+ A+  F                                D +  
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAF--------------------------------DSIPV 580

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            D V+WT MISG  + G   +A  +F +M  +G+ PDE T+  + +A   L AL+ G+++
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   ++ +    + F+ T+++DMYAKCGSID A  +F +I   +  ++ +N+++ GLAQH
Sbjct: 641 HANALK-LNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI--EMMNITAWNAMLVGLAQH 697

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           G G+ ++ +F++M+ +G+KPD VTF+ VL ACSH GLV E  +   SM  +YGIKP++EH
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEH 757

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+ D L R G + +A  LI+SM  +A++ ++R LLAACR+  + + G+    KLL+LE
Sbjct: 758 YSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 817

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   + YVLLSNM A   +W+E +  R +M    ++K PG+S+IE    +H F+   +S+
Sbjct: 818 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSN 877

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            QT+ I   +KDM   +K  GYVP T   + DV+EEEKE  + YHSEKLA+AFGL+++  
Sbjct: 878 RQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPP 937

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+ KNLR+CGDCH A K ++++Y REI++RDA RFH FK G CSC D+W
Sbjct: 938 STPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/529 (26%), Positives = 239/529 (45%), Gaps = 54/529 (10%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  +  TF  +L +  ++ S   G Q+HC  +K GL+  L + N+LI+ Y        A 
Sbjct: 311 VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            VF+    RDL+S+N++I G AQ      A+ LF ++    ++PD +T  ++  A + L 
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLP 430

Query: 225 DP-RIGKQ--FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           +   + KQ   HA+   N+    S+  + TA+I+ Y++   M  AE +F          A
Sbjct: 431 EGLSLSKQVHVHAIKINNV----SDSFVSTALIDAYSRNRCMKEAEILFERHNF--DLVA 484

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W++M++GYT                               Q     + L+LF  M   G 
Sbjct: 485 WNAMMAGYT-------------------------------QSHDGHKTLKLFALMHKQGE 513

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
             D+ T+  V + C  L A++ GK++H   I++  +  ++++++ ++DMY KCG +  A 
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDMSAAQ 572

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
             F  IP  +     + ++ISG  ++G  E +  VF +M LMG+ PD  T  T+  A S 
Sbjct: 573 FAFDSIP--VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSC 630

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
              +E+G+Q   + L             +VD+ A+ G +D+AY L + +    N   W A
Sbjct: 631 LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNA 689

Query: 522 LLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
           +L     H   K  +      K L ++PD      +LS         E  + +R +  D 
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
           GI KP     IEH   L   L         K+ E +++ M+M+  ++ Y
Sbjct: 750 GI-KPE----IEHYSCLADALGRA---GLVKQAENLIESMSMEASASMY 790



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 239/532 (44%), Gaps = 64/532 (12%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS-----DSPQEALVLYT 97
           + LIS ++  G    L  +R +F ++ + ++  WN+++  Y++S     ++ Q+A +L+ 
Sbjct: 78  NNLISMYSKCG---SLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLF- 133

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
            +L + +V  +  T   +L  C       +    H +  K GL+ D F+  AL++ Y  F
Sbjct: 134 RILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKF 193

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G +     +FE    RD+V +N ++  Y ++     A+ L      S + P+  T   + 
Sbjct: 194 GKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLA 253

Query: 218 SACTELNDPRIGKQF---------HAVVYKNLGC-------------------VGSN--- 246
               + +D    K F           ++++N G                    V S+   
Sbjct: 254 RISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVEC 313

Query: 247 ------MLLKTAVINMYAKCGLMNMAERVFS---TMGMSKSTAAWSSMISGYTREGKIER 297
                 ++L TAV     K   + + ++V      +G+       +S+I+ Y +  K   
Sbjct: 314 DQVTFILMLATAV-----KVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGF 368

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR +FD M +RDL+SW ++I+G +Q G   +A+ LF ++   G+ PD+ TM +VL+A   
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428

Query: 358 LG-ALDFGKRLHQQYIE--NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           L   L   K++H   I+  NV    + F++TA+ID Y++   +  A  +F +   N   V
Sbjct: 429 LPEGLSLSKQVHVHAIKINNV---SDSFVSTALIDAYSRNRCMKEAEILFER--HNFDLV 483

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
           + +N++++G  Q   G  ++ +F  M   G + D  T  TV   C     + +GKQ    
Sbjct: 484 A-WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
            +  G    +     ++D+  + G +  A     S+P   + V W  +++ C
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC 593



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 191/463 (41%), Gaps = 63/463 (13%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F F+ N+    S    G   H  I+ F    + F+ N LI  YS  G +  A +VF+   
Sbjct: 43  FGFLRNAITS-SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMP 101

Query: 172 ARDLVSYNTLINGYAQVKEPC-----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
            RDLVS+N+++  YAQ  E        A  LFR ++   +     T   M   C      
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
              + FH    K +G  G    +  A++N+Y K G +   + +F  M   +    W+ M+
Sbjct: 162 WASESFHGYACK-IGLDGDE-FVAGALVNIYLKFGKVKEGKVLFEEMPY-RDVVLWNLML 218

Query: 287 SGYTREGKIERARQLFDQMDQRDL------VSWTAMISG--------------------- 319
             Y   G  E A  L        L      +   A ISG                     
Sbjct: 219 KAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVS 278

Query: 320 -----------YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                      Y   G +S  L+ F  M    +  D+VT + +L   V + +L  G+++H
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338

Query: 369 QQYIENVVFGRNIFLTT--AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
              ++    G ++ LT   ++I+MY K      A +VF  + +  + +  +NS+I+G+AQ
Sbjct: 339 CMALK---LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSE--RDLISWNSVIAGIAQ 393

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +GL   ++ +F ++   GLKPD  T  +VL A S    + EG    + +  + IK     
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LPEGLSLSKQVHVHAIKINNVS 450

Query: 487 YG----CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
                  ++D  +R+  + EA  L +   +D   V W A++A 
Sbjct: 451 DSFVSTALIDAYSRNRCMKEAEILFERHNFDL--VAWNAMMAG 491


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 403/715 (56%), Gaps = 46/715 (6%)

Query: 10  SLLALLESCKSLKQALQ---IHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILF 65
           SL +++  C  L+ ++Q   IHG ++  G +    S++ L+  +A  G    L  +  +F
Sbjct: 113 SLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGI---LEDASSVF 169

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            +I  P+I  WN ++ G    +    AL L   M   G+  PN FT    L +CA ++  
Sbjct: 170 DEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC-PNMFTLSSALKACAGMALR 228

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G Q+H  +IK  +  D F+   LI  YS    +++A  VF+    RD++++N +I+G+
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           +Q +E   A  LF  M    I  +  T   +  +   L    + +Q HA+  K      S
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLK------S 342

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                  V+N                            S+I  Y + G +E A ++F++ 
Sbjct: 343 GFEFDNYVVN----------------------------SLIDTYGKCGHVEDATRVFEES 374

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
              DLV +T++++ Y+Q G   +AL L+ +M+  GI PD     ++L AC  L A + GK
Sbjct: 375 PIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H  +I    F  +IF   ++++MYAKCGSI+ A   F +IP  ++ +  ++++I GLA
Sbjct: 435 QVHV-HILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIP--VRGIVSWSAMIGGLA 491

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
           QHG G+ ++ +F++M  +G+ P+ +T V+VLCAC+H GLV E K +F SM + +GI+P  
Sbjct: 492 QHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQ 551

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY CM+DLL R G+L+ A  L+  MP+ AN+++W ALL A R+H+N  +GE A + LL 
Sbjct: 552 EHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLA 611

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           LEP+    +VLL+N+ A    W++  +VR+LM D  ++K PG S++E    ++ F+   +
Sbjct: 612 LEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDR 671

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SH ++ EI   L +++  LK AGYVP     + DV+  EKE ++ +HSEKLA+AFGLI +
Sbjct: 672 SHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIAT 731

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                IR+ KNLRIC DCH   K +S+I  REI+VRD  RFH F++G+CSC ++W
Sbjct: 732 PPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/525 (28%), Positives = 253/525 (48%), Gaps = 46/525 (8%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L++C   K L    Q+HG +V +G +     ++ L+  +A  G   G   +R LF  I
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCG---GFGDARSLFDAI 71

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + ++  WN L   Y  SD   EA+ L+  M+  GI  PN F+   ++N C  L     G
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGI-RPNEFSLSSMINVCTGLEDSVQG 130

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH ++IK G + D F  NAL+  Y+  G + +A  VF+     D+VS+N +I G    
Sbjct: 131 RKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLH 190

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           +    AL L R+M  S + P+ FT  +   AC  +    +G+Q H+ + K    +GS+  
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM--DMGSDSF 248

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L   +I+MY+KC  M+ A  VF  M   +   AW+++ISG+++  + E A  LF  M   
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVISGHSQNEEDEEAASLFPLMHTE 307

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
            +              GF+Q                  T+  VL++   L A    +++H
Sbjct: 308 GI--------------GFNQ-----------------TTLSTVLKSIAALQANYMCRQIH 336

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +++  F  + ++  ++ID Y KCG ++ A  VF + P  +  + LF S+++  AQ G
Sbjct: 337 ALSLKS-GFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP--IVDLVLFTSLVTAYAQDG 393

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
            GE ++ ++ EM+  G+KPD     ++L AC+     E+GKQ    +L +G    +    
Sbjct: 394 QGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGN 453

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            +V++ A+ G +++A      +P     V W A++     H   K
Sbjct: 454 SLVNMYAKCGSIEDASCAFSRIPVRG-IVSWSAMIGGLAQHGYGK 497



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 211/457 (46%), Gaps = 79/457 (17%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N F FP VL +C        G Q+H  ++  G + D F+ N+L+  Y+  G   +A  +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +    R +VS+N L + Y        A+ LF  M  S I+P+ F+  +M + CT L D  
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G++ H  + K LG   S+     A+++MYAK G++  A  V                  
Sbjct: 129 QGRKIHGYLIK-LG-YDSDAFSANALVDMYAKVGILEDASSV------------------ 168

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
                         FD++ + D+VSW A+I+G        +ALEL  +M   G+ P+  T
Sbjct: 169 --------------FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFT 214

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           + + L+AC G+   + G++LH   I+ +  G + FL   +IDMY+KC S+D A  VF  +
Sbjct: 215 LSSALKACAGMALRELGRQLHSSLIK-MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL----------- 456
           P+  + +  +N++ISG +Q+   E + ++F  M   G+  +  T  TVL           
Sbjct: 274 PE--RDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYM 331

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYG-C--------------MVDLL------- 494
           C   H   ++ G +F     NY +   ++ YG C              +VDL+       
Sbjct: 332 CRQIHALSLKSGFEFD----NYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVT 387

Query: 495 --ARDGRLDEAYGL---IQSMPYDANSVIWRALLAAC 526
             A+DG+ +EA  L   +Q      +S +  +LL AC
Sbjct: 388 AYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC 424



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 149/320 (46%), Gaps = 38/320 (11%)

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           I+ + F F ++  ACT   D  +GKQ H +V   +    S+  +  +++ +YAKCG    
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVV--VTGFDSDEFVANSLVILYAKCGGFGD 63

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  +F                                D +  R +VSW A+ S Y     
Sbjct: 64  ARSLF--------------------------------DAIPDRSVVSWNALFSCYVHSDM 91

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +A+ LF  M   GI P+E ++ +++  C GL     G+++H  Y+  + +  + F   
Sbjct: 92  HGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIH-GYLIKLGYDSDAFSAN 150

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++DMYAK G ++ A SVF +I K    +  +N+II+G   H     ++ + REM   G+
Sbjct: 151 ALVDMYAKVGILEDASSVFDEIAK--PDIVSWNAIIAGCVLHEYHHRALELLREMNKSGM 208

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
            P+  T  + L AC+   L E G+Q   S++   +         ++D+ ++   +D+A  
Sbjct: 209 CPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARL 268

Query: 506 LIQSMPYDANSVIWRALLAA 525
           + + MP + + + W A+++ 
Sbjct: 269 VFKLMP-ERDMIAWNAVISG 287



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M  LGI  +E    +VL+AC     L  GK++H   +    F  + F+  +++ +YAKCG
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVT-GFDSDEFVANSLVILYAKCG 59

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
               A S+F  IP   ++V  +N++ S      +   ++++F +M L G++P+  +  ++
Sbjct: 60  GFGDARSLFDAIPD--RSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSM 117

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           +  C+      +G++    ++  G          +VD+ A+ G L++A  +   +    +
Sbjct: 118 INVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPD 176

Query: 516 SVIWRALLAACRLHR 530
            V W A++A C LH 
Sbjct: 177 IVSWNAIIAGCVLHE 191


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/635 (38%), Positives = 371/635 (58%), Gaps = 45/635 (7%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
           Q  L   +S  SK     N      +L+ C  L+  K   QI  + IK  L+ D+ +   
Sbjct: 10  QFTLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELK---QIQAYTIKTNLQSDISVLTK 66

Query: 150 LIHFYSI---FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
           LI+F ++     Y+++AH +F+  L +D++ +N +  GYA+   P  A  LF ++  S +
Sbjct: 67  LINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGL 126

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
            PD +TF ++  AC      R G   H    K LG +  N+ +   +INMYA+C  MN A
Sbjct: 127 LPDDYTFSSLLKACASSKALREGMGLHCFAVK-LG-LNHNIYICPTLINMYAECNDMNAA 184

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                                           R +FD+M+Q  +VS+ A+I+GY++    
Sbjct: 185 --------------------------------RGVFDEMEQPCIVSYNAIITGYARSSQP 212

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
           ++AL LF ++++  I P +VTM++V+ +C  LGALD GK +H+ Y++   F + + + TA
Sbjct: 213 NEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHE-YVKKKGFDKYVKVNTA 271

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +IDM+AKCGS+  A+S+F  +   ++    ++++I   A HG G  +I++F EM+  G++
Sbjct: 272 LIDMFAKCGSLTDAISIFEGM--RVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVR 329

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           PD +TF+ +L ACSH GLVE+G+ +F SM   YGI P ++HYGCMVDLL R G LDEAY 
Sbjct: 330 PDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYN 389

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
            +  +   A  ++WR LL+AC  H N ++ +   +++ +L+  HG  YV+LSN+ A   R
Sbjct: 390 FVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGR 449

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           WE+   +RKLM D G+ K PG S +E N  +H F +    H  + E+   L ++  ++K 
Sbjct: 450 WEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKL 509

Query: 626 AGYVPNTVQVVF-DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
            GYVP+T  V   D++EE KE V+ YHSEKLA+AFGL+N+    TIR+ KNLRICGDCH 
Sbjct: 510 VGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHN 569

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           A KL+S I+ R+I++RD  RFH F+ G CSC DFW
Sbjct: 570 AAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 208/420 (49%), Gaps = 41/420 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL  C SL +  QI    + + L   IS  ++LI+F  L+   + +  +  LF QI +
Sbjct: 33  LSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILD 92

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            +I ++N + RGY+RS+SP  A  L+  +L  G++ P+++TF  +L +CA   + + G  
Sbjct: 93  KDIILFNIMARGYARSNSPYLAFSLFGELLCSGLL-PDDYTFSSLLKACASSKALREGMG 151

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +HC  +K GL  +++I   LI+ Y+    +N A  VF+      +VSYN +I GYA+  +
Sbjct: 152 LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL LFR++Q S I+P   T +++  +C  L    +GK  H  V K     G +  +K
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK----GFDKYVK 267

Query: 251 --TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
             TA+I+M+AKCG +  A  +F  M + + T AWS+MI  +   G   +A  +F++M + 
Sbjct: 268 VNTALIDMFAKCGSLTDAISIFEGMRV-RDTQAWSAMIVAFATHGDGLKAISMFEEMKRE 326

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          G+ PDE+T + +L AC   G ++ G+   
Sbjct: 327 -------------------------------GVRPDEITFLGLLYACSHAGLVEQGRGYF 355

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
               +       I     ++D+  + G +D A +   K+      + L+ +++S  + HG
Sbjct: 356 YSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPI-LWRTLLSACSTHG 414



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 167/337 (49%), Gaps = 9/337 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           SSLL    S K+L++ + +H   V  GLNH+I     LI+ +A     N +  +R +F +
Sbjct: 134 SSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAEC---NDMNAARGVFDE 190

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           ++ P I  +N ++ GY+RS  P EAL L+  + +  I  P + T   V+ SCA L +   
Sbjct: 191 MEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNI-EPTDVTMLSVIMSCALLGALDL 249

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH ++ K G +  + +  ALI  ++  G + +A  +FEG   RD  +++ +I  +A 
Sbjct: 250 GKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFAT 309

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   A+ +F +M+   ++PD  TF+ +  AC+       G+ +   + K  G +   +
Sbjct: 310 HGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYG-ITPGI 368

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                ++++  + G ++ A      + +  +   W +++S  +  G +E A+++ +++ +
Sbjct: 369 KHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFE 428

Query: 308 RDLV---SWTAMISGYSQVGGFSQALELFGKMESLGI 341
            D      +  + + Y++VG +     L   M+  G+
Sbjct: 429 LDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGV 465


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 357/558 (63%), Gaps = 10/558 (1%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S +I  ++LS     L ++ ++F+QI+ P + +WN ++RG S+SD P EA+ +YT M  +
Sbjct: 53  SDVIRSYSLSS--TNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQ 110

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           GI + NN T  F+  +CAR+S   SG +IH H +K G E  LF+ NALIH Y++ G +  
Sbjct: 111 GI-TGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGF 169

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A K+F+G L RDLVS+NTLI GY+Q  +    L LF  M  + I+ DA T V +  AC+ 
Sbjct: 170 AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 229

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L D         V Y     +  ++ L   +I+MY +  L  +A+ VF  M   ++  +W
Sbjct: 230 LGDWEFADSM--VKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRM-RERNIVSW 286

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           ++++ G+ + G +  AR+LFD M +RD++SWT+MI+GYSQ   FS A++LF +M +  + 
Sbjct: 287 NALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 346

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD+VT+ +VL AC  LG LD G  +H  YI       +I++  ++IDMY KCG ++ AL 
Sbjct: 347 PDKVTVASVLSACAHLGKLDVGWAVHH-YIRRHGVQADIYVGNSLIDMYCKCGMVEKALE 405

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF+++ K+  +VS + S+ISGLA +G   +++ +F +M   G++P   TFV +L AC+H 
Sbjct: 406 VFHRM-KDKDSVS-WTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 463

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLV +G ++FESM + +G+ P M+HYGC+VDLL+R G +D+AY  I+ MP   + V+WR 
Sbjct: 464 GLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRI 523

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL+AC+LH N  + EIA ++LL+L+P    +YVLLSN  A   RW++A ++R+LM+DS +
Sbjct: 524 LLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDV 583

Query: 582 QKPPGWSYIEHNGTLHRF 599
           QKP G S IE +G +  +
Sbjct: 584 QKPSGSSSIEVDGMVSNY 601


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 381/623 (61%), Gaps = 21/623 (3%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN----GLFRSRILF 65
           S + LL++CKS++   QI  QI+ +G   H S   L  F     C +     L  +  +F
Sbjct: 34  SCIFLLKNCKSMQHLKQIQTQILRTGF--HQSGDTLNKFMVC--CTDPSIGNLHYAERIF 89

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + ID P +FI+N +++ ++++ S ++A++L+  +  +G+ SP+NFT+PFV  +   L   
Sbjct: 90  NYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGL-SPDNFTYPFVFKAIGCLGEV 148

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G +++  ++K GLEFD ++ N+L+  Y+  G + N  +VFE    RD+VS+N LI+GY
Sbjct: 149 REGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGY 208

Query: 186 AQVKEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            + +    A+ +FR+MQ  S ++P+  T V+  SAC  L    +GK+ H  V + LG   
Sbjct: 209 VKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLG--- 265

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
             + +  A+++MY KCG +++A  +F+ M + K+   W+SM+SGY   G+++ AR+LF++
Sbjct: 266 FTIKIGNALVDMYCKCGHLSIAREIFNDMPI-KTVICWTSMVSGYVNCGQLDEARELFER 324

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
              RD+V WTAMI+GY Q   F  A+ LF +M+   + PD  T+VA+L  C  LG L+ G
Sbjct: 325 SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG 384

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K +H    EN +   +  + TA+I+MYAKCG I+ +L +F  + +  K  + + SII GL
Sbjct: 385 KWIHGYIDENKIM-IDAVVGTALIEMYAKCGFIEKSLEIFNGLKE--KDTASWTSIICGL 441

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           A +G    ++ +F EM   G+KPD +TF+ VL ACSHGGLVEEG++ F SM   Y I+P+
Sbjct: 442 AMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPK 501

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI---WRALLAACRLHRNAKIGEIAGQ 540
           +EHYGC++DLL R G+LDEA  LI+  P   N VI   + ALL+ACR H N ++GE   +
Sbjct: 502 LEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAK 561

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           +L+ +E    + + LL+N+ A   RWE+  +VR+ M D G++K PG S +E NG +H FL
Sbjct: 562 RLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFL 621

Query: 601 ASKKSHPQTKEIELMLKDMTMKL 623
               SHP+ +EI  ML  +   L
Sbjct: 622 VGDASHPEMREIYSMLDSIAKPL 644


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/713 (34%), Positives = 394/713 (55%), Gaps = 48/713 (6%)

Query: 13  ALLESCKS---LKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           ALL SC +       L I   ++ +G   +H      LI  F   G    +  +R++F +
Sbjct: 150 ALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLD--IQSARMVFDK 207

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + N+  W  ++  YS+     +A+ L+  +L     +P+ FT   +L++C  L  F  
Sbjct: 208 MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSE-YTPDKFTLTSLLSACVELEFFSL 266

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H  +I+ GL  D+F+   L+  Y+    + N+ K+F   L  +++S+  LI+GY Q
Sbjct: 267 GKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQ 326

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            ++   A+ LF  M    + P+ FTF ++  AC  L D  IGKQ H    K         
Sbjct: 327 SRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIK--------- 377

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                    +G+S      +S+I+ Y R G +E AR+ F+ + +
Sbjct: 378 -------------------------LGLSTINCVGNSLINMYARSGTMECARKAFNILFE 412

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           ++L+S+       ++     ++     ++E  G+     T   +L     +G +  G+++
Sbjct: 413 KNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQI 470

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   +++  FG N+ +  A+I MY+KCG+ + AL VF  +    + V  + SIISG A+H
Sbjct: 471 HALIVKSG-FGTNLCINNALISMYSKCGNKEAALQVFNDM--GYRNVITWTSIISGFAKH 527

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           G    ++ +F EM  +G+KP+ VT++ VL ACSH GL++E  + F SM  N+ I P+MEH
Sbjct: 528 GFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEH 587

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMVDLL R G L EA   I SMP+DA++++WR  L +CR+HRN K+GE A +K+L+ E
Sbjct: 588 YACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILERE 647

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P   A Y+LLSN+ A   RW++   +RK M    + K  G+S+IE +  +H+F     SH
Sbjct: 648 PHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSH 707

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           PQ ++I   L ++ +K+K+ GY+PNT  V+ DV++E+KE  +  HSEK+A+A+ LI++  
Sbjct: 708 PQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPK 767

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + IR+ KNLR+CGDCH A K +S +  REI+VRDA RFH  K G CSC D+W
Sbjct: 768 PKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 217/460 (47%), Gaps = 48/460 (10%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSML--SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
           W+ ++  ++ +     AL+ +  ML  S+ I+ PN + F  +L SC+    F +G  I  
Sbjct: 110 WSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFA 169

Query: 134 HIIKFGLEFD--LFIRNALIHFYSIFGY-INNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
            ++K G  FD  + +  ALI  ++  G  I +A  VF+    ++LV++  +I  Y+Q+  
Sbjct: 170 FLLKTGY-FDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGL 228

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              A+ LF ++  S   PD FT  ++ SAC EL    +GKQ H+ V ++   + S++ + 
Sbjct: 229 LDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRS--GLASDVFVG 286

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             +++MYAK   +  + ++F+TM +  +  +W+++ISGY +     R  Q          
Sbjct: 287 CTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISGYVQ----SRQEQ---------- 331

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                            +A++LF  M    + P+  T  +VL+AC  L     GK+LH Q
Sbjct: 332 -----------------EAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQ 374

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGL 429
            I+  +   N  +  ++I+MYA+ G+++ A   F  +  KNL +   +N+     A+   
Sbjct: 375 TIKLGLSTINC-VGNSLINMYARSGTMECARKAFNILFEKNLIS---YNTAADANAKALD 430

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
            + S     E+E  G+     T+  +L   +  G + +G+Q    ++  G    +     
Sbjct: 431 SDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNA 488

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           ++ + ++ G  + A  +   M Y  N + W ++++    H
Sbjct: 489 LISMYSKCGNKEAALQVFNDMGY-RNVITWTSIISGFAKH 527



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 181/396 (45%), Gaps = 42/396 (10%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSL 171
            +L +C R  + + G  +H  +I  GL  D  + N+LI  YS  G   NA  +F   G  
Sbjct: 44  LLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKM---QDSCIQPDAFTFVAMFSACTELNDPRI 228
            RDLVS++ +I+ +A       AL  F  M     + I P+ + F A+  +C+       
Sbjct: 104 KRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL-MNMAERVFSTMGMSKSTAAWSSMIS 287
           G    A + K  G   S++ +  A+I+M+ K GL +  A  VF  M   K+   W+ MI+
Sbjct: 164 GLAIFAFLLKT-GYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKM-QHKNLVTWTLMIT 221

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y++ G ++ A  LF ++          ++S Y+                     PD+ T
Sbjct: 222 RYSQLGLLDDAVDLFCRL----------LVSEYT---------------------PDKFT 250

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           + ++L ACV L     GK+LH   I + +   ++F+   ++DMYAK  +++ +  +F  +
Sbjct: 251 LTSLLSACVELEFFSLGKQLHSWVIRSGL-ASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
             +   V  + ++ISG  Q    + +I +F  M    + P+  TF +VL AC+       
Sbjct: 310 LHH--NVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGI 367

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           GKQ     +  G+         ++++ AR G ++ A
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECA 403



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 5/178 (2%)

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +L+AC+  G L+ GK LH + I++ +   ++ L + +I +Y+KCG  + ALS+F  +  +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNS-LITLYSKCGDWENALSIFRNMGHH 103

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPDGVTFVTVLCACSHGGLVEE 467
            + +  +++IIS  A + +   ++  F  M       + P+   F  +L +CS+      
Sbjct: 104 KRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 468 GKQFFESMLNYGIKPQMEHYGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           G   F  +L  G        GC ++D+  + G   ++  ++       N V W  ++ 
Sbjct: 164 GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMIT 221


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/628 (39%), Positives = 368/628 (58%), Gaps = 16/628 (2%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLI-SFFALSGCK--NGLFR 60
           V+    +L LL  C+S++   QIH  +V  G +   S +SQLI S+  LS      GL  
Sbjct: 7   VVASRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCH 66

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +I  P+ F++NTL+R YS SD PQEAL L+  +L +GI+ PN FT PFVL +C 
Sbjct: 67  ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGIL-PNEFTLPFVLKACT 125

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + + +     H  ++K G    +F+ NAL+HF++  G + ++ + F     R++VS+NT
Sbjct: 126 TVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNT 185

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GYAQ  E   A  LF +M+   +  D FT V++  AC+   +  +G+  H     ++
Sbjct: 186 MIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHC----HM 241

Query: 241 GCVGSNM--LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
              GS +  +L  A+++MY KCG + MA R F  M + K+   W+SM+    + G ++  
Sbjct: 242 LVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPI-KNVVTWTSMLCAQAKHGSVDAV 300

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R  F+QM +R++VSW AMIS Y Q G   + L+L+ +M SLGI PDE T+  VL AC   
Sbjct: 301 RDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQN 360

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           G L  GK +H  Y+ +      + L  +++DMYA+CG +DTA+ +F ++P   K V  +N
Sbjct: 361 GDLASGKMIHC-YVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPN--KNVISWN 417

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
            II  LA HG  + ++  FR M      PD +TFV +L ACSHGGL+E G+ +FE+M   
Sbjct: 418 VIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARV 477

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y ++P++EHYGCMVDLL R G L +A  LI+ M    + V+W ALL ACR+H N +IG++
Sbjct: 478 YNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKL 537

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             ++LL+LE   G  +VL+ N+  ET +WE+ +++RKLM + G +K  G S IE    +H
Sbjct: 538 VIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIH 597

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKS 625
            F      H  T EI   +  ++  L S
Sbjct: 598 EFGVEDLRHESTNEIYAAVDQLSYHLVS 625


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/665 (35%), Positives = 387/665 (58%), Gaps = 12/665 (1%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R++ LF  I  P+    +TL+  ++    P EA+ LY S+ ++GI  P+N  F  V  +C
Sbjct: 84  RAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGI-KPHNSVFLTVAKAC 142

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
                     ++H   I+ G+  D F+ NALIH Y     +  A +VF+  + +D+VS+ 
Sbjct: 143 GASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWT 202

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++ + Y     P   L +F +M  + ++P++ T  ++  AC+EL D + G+  H    ++
Sbjct: 203 SMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRH 262

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G +  N+ + +A++++YA+C  +  A  VF  M   +   +W+ +++ Y    + ++  
Sbjct: 263 -GMI-ENVFVCSALVSLYARCLSVKQARLVFDLMP-HRDVVSWNGVLTAYFTNREYDKGL 319

Query: 300 QLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            LF QM  +    D  +W A+I G  + G   +A+E+  KM++LG  P+++T+ + L AC
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPAC 379

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             L +L  GK +H     + + G ++   TA++ MYAKCG ++ + +VF  I +  K V 
Sbjct: 380 SILESLRMGKEVHCYVFRHWLIG-DLTTMTALVYMYAKCGDLNLSRNVFDMICR--KDVV 436

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N++I   A HG G   + +F  M   G+KP+ VTF  VL  CSH  LVEEG Q F SM
Sbjct: 437 AWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSM 496

Query: 476 -LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
             ++ ++P   HY CMVD+ +R GRL EAY  IQ MP +  +  W ALL ACR+++N ++
Sbjct: 497 GRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVEL 556

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            +I+  KL ++EP++  +YV L N+L     W EA + R LM + GI K PG S+++   
Sbjct: 557 AKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGD 616

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F+   K++ ++ +I   L ++  K+KSAGY P+T  V+ D+D+EEK   +  HSEK
Sbjct: 617 RVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEK 676

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFG++N   + +IR+ KNLRICGDCH A K +S++    I+VRD++RFH F+ GNCS
Sbjct: 677 LAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCS 736

Query: 715 CMDFW 719
           C D W
Sbjct: 737 CQDLW 741



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 144/327 (44%), Gaps = 39/327 (11%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G    A ++F+     D  + +TLI+ +     P  A+ L+  ++   I+P    F+ + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 218 SACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            AC    D    K+ H    +   C + S+  L  A+I+ Y KC  +  A RVF  + + 
Sbjct: 140 KACGASGDASRVKEVHDDAIR---CGMMSDAFLGNALIHAYGKCKCVEGARRVFDDL-VV 195

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K   +W+SM S Y                             G  ++G     L +F +M
Sbjct: 196 KDVVSWTSMSSCYVN--------------------------CGLPRLG-----LAVFCEM 224

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ P+ VT+ ++L AC  L  L  G+ +H   + + +   N+F+ +A++ +YA+C S
Sbjct: 225 GWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMI-ENVFVCSALVSLYARCLS 283

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  A  VF  +P   + V  +N +++    +   +  +A+F +M   G++ D  T+  V+
Sbjct: 284 VKQARLVFDLMPH--RDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVI 341

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQ 483
             C   G  E+  +    M N G KP 
Sbjct: 342 GGCMENGQTEKAVEMLRKMQNLGFKPN 368



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 138/298 (46%), Gaps = 18/298 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L++L   C S+KQA  +   + H  +     +  L ++F       GL     LFSQ+
Sbjct: 272 SALVSLYARCLSVKQARLVFDLMPHRDVVSW--NGVLTAYFTNREYDKGL----ALFSQM 325

Query: 69  DNPNI----FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            +  +      WN ++ G   +   ++A+ +   M + G   PN  T    L +C+ L S
Sbjct: 326 SSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGF-KPNQITISSFLPACSILES 384

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G ++HC++ +  L  DL    AL++ Y+  G +N +  VF+    +D+V++NT+I  
Sbjct: 385 LRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIA 444

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG--- 241
            A        L LF  M  S I+P++ TF  + S C+       G Q    ++ ++G   
Sbjct: 445 NAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQ----IFNSMGRDH 500

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            V  +      +++++++ G ++ A      M M  + +AW +++        +E A+
Sbjct: 501 LVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAK 558


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/784 (33%), Positives = 419/784 (53%), Gaps = 82/784 (10%)

Query: 8    HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
            +SS+L L    K L++   +H  I  +G+    +  ++L+  +   G    L   R +F 
Sbjct: 454  YSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG---ALREGRRIFD 510

Query: 67   QIDNPN-IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             I + N +F+WN +M  Y++    +E++ L+  M   GI + N++TF  +L   A L   
Sbjct: 511  HILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGI-TGNSYTFSCILKCFATLGRV 569

Query: 126  KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
                +IH  + K G      + N+LI  Y   G +++AHK+F+    RD+VS+N++I+G 
Sbjct: 570  GECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 186  AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                    AL  F +M    +  D  T V   +AC  +    +G+  H    K   C   
Sbjct: 630  VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVK--ACFSR 687

Query: 246  NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
             ++    +++MY+KCG +N A + F  MG  K+  +W+S+I+ Y REG  + A +LF +M
Sbjct: 688  EVMFNNTLLDMYSKCGNLNDAIQAFEKMG-QKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 306  DQR----DLVSWT-----------------------------------AMISGYSQVGGF 326
            + +    D+ S T                                   A++  Y++ G  
Sbjct: 747  ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSM 806

Query: 327  SQALELFGKM----------------------ESLGI--------HPDEVTMVAVLRACV 356
             +A  +F ++                      E+L +         PD +TM  +L AC 
Sbjct: 807  EEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPACG 866

Query: 357  GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             L AL+ G+ +H   + N  +   + +  A+IDMY KCGS+  A  +F  IP+  K +  
Sbjct: 867  SLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHARLLFDMIPE--KDLIT 923

Query: 417  FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
            +  +ISG   HGLG  +IA F++M + G+KPD +TF ++L ACSH GL+ EG  FF SM+
Sbjct: 924  WTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMI 983

Query: 477  NY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
            +   ++P++EHY CMVDLLAR G L +AY LI++MP   ++ IW ALL  CR+H + ++ 
Sbjct: 984  SECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELA 1043

Query: 536  EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
            E   + + +LEPD+  +YVLL+N+ AE  +WEE +++R+ +   G++K PG S+IE  G 
Sbjct: 1044 EKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGK 1103

Query: 596  LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
               F+++  +HPQ K I  +L ++ +K+K+ G+ P     + +  + EKE  +  HSEKL
Sbjct: 1104 FTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKL 1163

Query: 656  ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
            A+AFG++N  S  TIR+ KNLR+C DCH   K +S+  RREI++RD+ RFH FK G CSC
Sbjct: 1164 AMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSC 1223

Query: 716  MDFW 719
             DFW
Sbjct: 1224 RDFW 1227


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 396/715 (55%), Gaps = 47/715 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNGLFRSRILF 65
           ++LL LL S         +H  +    L HH  +   + LI  +++ G    +  +R +F
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVY--KLGHHADAFVGTALIDAYSVRG---NVDVARHVF 194

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             I   ++  W  ++  Y+ +   +E+L L+  M   G   PNNFT    L SC  L +F
Sbjct: 195 DDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG-YKPNNFTISGALKSCLGLEAF 253

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  +H   +K   + DLF+  AL+  Y+  G I +A ++FE     DL+ ++ +I  Y
Sbjct: 254 NVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARY 313

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ      AL LF +M+ + + P+ FTF ++  AC       +GKQ H+ V K  G + S
Sbjct: 314 AQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK-FG-LNS 371

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N+ +  A++++YAKCG                                +IE + +LF+++
Sbjct: 372 NVFVSNAIMDVYAKCG--------------------------------EIENSMKLFEEL 399

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             R+ V+W  +I GY Q+G   +A+ LF  M    + P EVT  +VLRA   L AL+ G 
Sbjct: 400 PDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGL 459

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H   I+  ++ ++  +  ++IDMYAKCG I+ A   F K+ K    VS +N++I G +
Sbjct: 460 QIHSLTIK-TMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKR-DEVS-WNAMICGYS 516

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            HG+   ++ +F  M+    KP+ +TFV VL ACS+ GL+ +G+  FESM  +Y IKP +
Sbjct: 517 MHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCI 576

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY CMV LL R GR DEA  LI  + Y  + ++WRALL AC +H+   +G +  Q +L+
Sbjct: 577 EHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLE 636

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           +EP   A +VLLSNM A   RW+    VRK M    ++K PG S++E+ G +H F     
Sbjct: 637 MEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDT 696

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHP  K I  ML+ +  K + AGYVP+   V+ DV ++EKE  +  HSE+LALA+GLI +
Sbjct: 697 SHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRT 756

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               +IRI KNLRIC DCH   KL+S++ +REI++RD  RFH F+ G CSC D+W
Sbjct: 757 PLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 192/400 (48%), Gaps = 40/400 (10%)

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G  +HCHI+K G   DLF +N L++FY     + +A K+F+     + +S+ TL  GY+
Sbjct: 53  AGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  +   AL    ++     + + F F  +      ++   +    HA VYK LG   ++
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYK-LG-HHAD 170

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             + TA+I+ Y+  G +++A  VF  +   K   +W+ M++ Y      E + QLF+QM 
Sbjct: 171 AFVGTALIDAYSVRGNVDVARHVFDDI-CCKDMVSWTGMVACYAENCFYEESLQLFNQM- 228

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                     I GY                      P+  T+   L++C+GL A + GK 
Sbjct: 229 ---------RIMGYK---------------------PNNFTISGALKSCLGLEAFNVGKS 258

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK-NLKTVSLFNSIISGLA 425
           +H   ++   +  ++F+  A++++YAK G I  A  +F ++PK +L   SL   +I+  A
Sbjct: 259 VHGCALKG-CYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSL---MIARYA 314

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           Q    + ++ +F  M    + P+  TF +VL AC+    ++ GKQ    +L +G+   + 
Sbjct: 315 QSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVF 374

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               ++D+ A+ G ++ +  L + +P D N V W  ++  
Sbjct: 375 VSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWNTIIVG 413



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLF 59
           M+   + +SS+L    S  +L+  LQIH   + +  N   + ++ LI  +A  G  N   
Sbjct: 435 MQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRIND-- 492

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R+ F +++  +   WN ++ GYS      EAL L+  M+      PN  TF  VL++C
Sbjct: 493 -ARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLF-DMMQHTDCKPNKLTFVGVLSAC 550

Query: 120 A 120
           +
Sbjct: 551 S 551


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/627 (39%), Positives = 359/627 (57%), Gaps = 51/627 (8%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           ML  G  SPN FTFPF + SCA LS   +G Q+HCH+ K G   + F++ +LI  Y    
Sbjct: 1   MLRSG-ASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCS 59

Query: 159 YINNAHKVF-EGSLARDL-VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            I+NA K+F E   +R L V YN+L++GYA        + LF +M++  ++ +  T + +
Sbjct: 60  LIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
              C    +  +G   H    K                                   G+ 
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVK----------------------------------FGLD 145

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
             ++  + +++ Y + G+I+  R+LFD+M ++ L++W AMI+GY+Q G  +  LEL+ +M
Sbjct: 146 MDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEM 205

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
           ES G  PD +T+V VL +C  LGAL  GK + ++ +E   F  N FL  A+++MYA+CG+
Sbjct: 206 ESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERK-MEGFGFSSNPFLNNALVNMYARCGN 264

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  A  +F  +P  +K+V  + +II G   HG GE ++ +F EM   G+KPDG  FV+VL
Sbjct: 265 LKKARDIFDGMP--VKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVL 322

Query: 457 CACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSH GL  +G  +F  M   YG++P  EHY CMVDLL R GRL+EA  LI+SM   A+
Sbjct: 323 SACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRAD 382

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
             +W ALL AC++HRN ++ E+A +++++LEP +  +YVLLSN+  E    E   +VR L
Sbjct: 383 GALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRML 442

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           M    ++K PG SY+E  G +H F A  ++HPQT EI   L ++   +K           
Sbjct: 443 MRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKN--- 499

Query: 636 VFDVDEEEKETVVS---YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
               D E +E  ++    HSEKLA+AF L+N+R +  I I KNLRICGDCHL  KL+S+I
Sbjct: 500 ----DHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKI 555

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
             R+ +VRDA RFH FK G CSC ++W
Sbjct: 556 VDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 171/344 (49%), Gaps = 26/344 (7%)

Query: 15  LESCKSLKQAL---QIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++SC +L   +   Q+H  +  +G L      + LIS +   G  + +  +R LF +  N
Sbjct: 17  IKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMY---GKCSLIDNARKLFDE--N 71

Query: 71  PN----IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           P        +N+L+ GY+ +   ++ +VL+  M   G V  N  T   ++  C    +  
Sbjct: 72  PQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELG-VEINGVTMLGLVQPCGIPGNLG 130

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G  +H   +KFGL+ D  + N L+  Y   G I+   K+F+    + L+++N +INGYA
Sbjct: 131 LGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYA 190

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG-- 244
           Q       L L+++M+     PD  T V + S+C  L    +GK+    V + +   G  
Sbjct: 191 QNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE----VERKMEGFGFS 246

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           SN  L  A++NMYA+CG +  A  +F  M + KS  +W+++I GY   G+ E A  LFD+
Sbjct: 247 SNPFLNNALVNMYARCGNLKKARDIFDGMPV-KSVVSWTAIIGGYGMHGQGEVAVGLFDE 305

Query: 305 M----DQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHP 343
           M     + D  ++ +++S  S  G  ++ L+ FG ME   G+ P
Sbjct: 306 MIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRP 349



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRSRILF 65
           ++L L++ C    +L   + +HG  V  GL+   S    L++ +  SG    +   R LF
Sbjct: 115 TMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSG---EIDCGRKLF 171

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++    +  WN ++ GY+++      L LY  M SKG   P+  T   VL+SCA L + 
Sbjct: 172 DEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFC-PDPLTLVGVLSSCAHLGAL 230

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G ++   +  FG   + F+ NAL++ Y+  G +  A  +F+G   + +VS+  +I GY
Sbjct: 231 SVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGY 290

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
               +   A+ LF +M    I+PD   FV++ SAC+       G  +  V+ +  G +  
Sbjct: 291 GMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYG-LRP 349

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                + ++++  + G +N A  +  +M +    A W +++        +E A   F+Q+
Sbjct: 350 GAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQV 409


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/668 (37%), Positives = 388/668 (58%), Gaps = 51/668 (7%)

Query: 64  LFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           LF++ +D  ++F WN+++   +RS    EAL+ ++SM  K  + P   +FP  + +C+ L
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSM-RKLSLYPTRSSFPCAIKACSSL 89

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
               SG Q H     FG + D+F+ +ALI  YS  G + +A KVF+    R++VS+ ++I
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 183 NGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
            GY        A+ LF+ +       D  +  D+   V++ SAC+ +    + +  H+ V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 237 YK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            K   + G    N LL     + YAK G                              EG
Sbjct: 210 IKRGFDRGVSVGNTLL-----DAYAKGG------------------------------EG 234

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVL 352
            +  AR++FDQ+  +D VS+ +++S Y+Q G  ++A E+F ++ ++  +  + +T+  VL
Sbjct: 235 GVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVL 294

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            A    GAL  GK +H Q I  +    ++ + T++IDMY KCG ++TA   F ++ KN K
Sbjct: 295 LAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM-KN-K 351

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + ++I+G   HG    ++ +F  M   G++P+ +TFV+VL ACSH GL  EG ++F
Sbjct: 352 NVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWF 411

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            +M   +G++P +EHYGCMVDLL R G L +AY LIQ M    +S+IW +LLAACR+H+N
Sbjct: 412 NAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKN 471

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++ EI+  +L +L+  +  +Y+LLS++ A+  RW++  +VR +M + G+ KPPG+S +E
Sbjct: 472 VELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLE 531

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            NG +H FL   + HPQ ++I   L ++  KL  AGYV NT  V  DVDEEEKE  +  H
Sbjct: 532 LNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVH 591

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFG++N+    T+ + KNLR+C DCH   KL+S+I  RE +VRDA RFH FK G
Sbjct: 592 SEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDG 651

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 652 GCSCGDYW 659



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 177/381 (46%), Gaps = 67/381 (17%)

Query: 1   MKRLVL--EHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L L    SS    +++C SL       Q H Q    G    I  SS LI  ++  G 
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG- 125

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-------------S 101
              L  +R +F +I   NI  W +++RGY  + +  +A+ L+  +L             S
Sbjct: 126 --KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY-- 159
            G+VS        V+++C+R+ +      IH  +IK G +  + + N L+  Y+  G   
Sbjct: 184 MGLVS--------VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGG 235

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFS 218
           +  A K+F+  + +D VSYN++++ YAQ      A  +FR++ ++  +  +A T   +  
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLL 295

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           A +     RIGK  H  V + +G +  ++++ T++I+MY KCG +  A + F  M  +K+
Sbjct: 296 AVSHSGALRIGKCIHDQVIR-MG-LEDDVIVGTSIIDMYCKCGRVETARKAFDRM-KNKN 352

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W++MI+GY   G                                 ++ALELF  M  
Sbjct: 353 VRSWTAMIAGYGMHGHA-------------------------------AKALELFPAMID 381

Query: 339 LGIHPDEVTMVAVLRACVGLG 359
            G+ P+ +T V+VL AC   G
Sbjct: 382 SGVRPNYITFVSVLAACSHAG 402



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 140/300 (46%), Gaps = 8/300 (2%)

Query: 4   LVLEHSSLLALLESC-----KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL 58
           + L+   L++++ +C     K L ++  IH  ++  G +  +S    +      G + G+
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTES--IHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGV 236

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +R +F QI + +   +N++M  Y++S    EA  ++  ++   +V+ N  T   VL +
Sbjct: 237 AVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLA 296

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
            +   + + G  IH  +I+ GLE D+ +  ++I  Y   G +  A K F+    +++ S+
Sbjct: 297 VSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSW 356

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
             +I GY        AL LF  M DS ++P+  TFV++ +AC+       G ++   +  
Sbjct: 357 TAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKG 416

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
             G V   +     ++++  + G +  A  +   M M   +  WSS+++       +E A
Sbjct: 417 RFG-VEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELA 475


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/738 (34%), Positives = 412/738 (55%), Gaps = 64/738 (8%)

Query: 24   ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
             ++IHG ++  G +  +     L++F+   G   GL ++  +F ++ NP   +WN  +  
Sbjct: 693  GMEIHGCLIKRGFDLDVYLRCALMNFY---GRCWGLEKANQVFHEMPNPEALLWNEAIIL 749

Query: 83   YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
              +S+  Q+ + L+  M     +     T   VL +C ++ +  +  QIH ++ +FGL+ 
Sbjct: 750  NLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDS 808

Query: 143  DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK------------- 189
            D+ + N LI  YS  G +  A +VF+    R+  S+N++I+ YA +              
Sbjct: 809  DVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELE 868

Query: 190  ----EPCPALW------------------LFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
                +P    W                  + ++MQ    +P++ +  ++  A +EL    
Sbjct: 869  SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLN 928

Query: 228  IGKQFHAVVYKN-LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +GK+ H  V +N   C   ++ + T++I+MY K   +  A+ VF  M  +++  AW+S++
Sbjct: 929  MGKETHGYVLRNGFDC---DVYVGTSLIDMYVKNHSLXSAQAVFDNMK-NRNIFAWNSLV 984

Query: 287  SGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
            SGY+ +G  E A +L +QM++     DLV+W  MISGY+  G   +A             
Sbjct: 985  SGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAF-----------M 1033

Query: 343  PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            P+  ++  +LRAC  L  L  GK +H   I N  F  ++F+ TA+IDMY+K  S+  A  
Sbjct: 1034 PNSASITCLLRACASLSLLQKGKEIHCLSIRNG-FIEDVFVATALIDMYSKSSSLKNAHK 1092

Query: 403  VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
            VF +I    KT++ +N +I G A  GLG+ +I+VF EM+ +G+ PD +TF  +L AC + 
Sbjct: 1093 VFRRIQN--KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 1150

Query: 463  GLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
            GL+ EG ++F+SM+ +Y I P++EHY CMVDLL R G LDEA+ LI +MP   ++ IW A
Sbjct: 1151 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 1210

Query: 522  LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
            LL +CR+H+N    E A + L  LEP++ A+Y+L+ N+ +   RWE+   +R+LM  +G+
Sbjct: 1211 LLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 1270

Query: 582  QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
            +    WS+I+ N  +H F + +K HP   +I   L  +  ++K  GYVP+   V  ++DE
Sbjct: 1271 RNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDE 1330

Query: 642  EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
             EK+ ++  H+EKLA+ +GLI  ++ E IR+ KN RIC DCH A K +S +  RE+ +RD
Sbjct: 1331 VEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRD 1390

Query: 702  AIRFHLFKKGNCSCMDFW 719
             +RFH F++G CSC DFW
Sbjct: 1391 GVRFHHFREGKCSCNDFW 1408



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 18/311 (5%)

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY-SQVGGFSQALELFGKMES 338
           AA  ++IS Y   G    A  +F     R+ + W + +  + S  G     LE+F ++  
Sbjct: 608 AAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHG 667

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+  D       L+ C  +  +  G  +H   I+   F  +++L  A+++ Y +C  ++
Sbjct: 668 KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKR-GFDLDVYLRCALMNFYGRCWGLE 726

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF+++P N + +    +II  L    L +  + +FR+M+   LK +  T V VL A
Sbjct: 727 KANQVFHEMP-NPEALLWNEAIILNLQSEKL-QKGVELFRKMQFSFLKAETATIVRVLQA 784

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           C   G +   KQ    +  +G+   +     ++ + +++G+L+ A  +  SM  + N+  
Sbjct: 785 CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSME-NRNTSS 843

Query: 519 WRALLAACRLHRNAKIGEIAGQKLL-------DLEPDHGAHYVLLSNMLAETYRWEEARQ 571
           W +++++      A +G +     L       D++PD      LLS      Y+ EE   
Sbjct: 844 WNSMISSY-----AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK-EEVLN 897

Query: 572 VRKLMDDSGIQ 582
           + + M   G +
Sbjct: 898 ILQRMQGEGFK 908


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 371/580 (63%), Gaps = 10/580 (1%)

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           E ++    A++  Y+    +  A + F+    R +VS+N +++GYAQ       L LF +
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDE 250

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M ++ I+PD  T+V + SAC+   DP +       +++    +  N  ++TA+++MYAKC
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQ--IQLNCFVRTALLDMYAKC 308

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +  A R+F  +G  +++  W++MIS YTR G ++ AR+LF+ M  R++V+W +MI+GY
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368

Query: 321 SQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           +Q G  + A+ELF +M  +  + PDEVTMV+V+ AC  LGAL+ G  + +   EN +   
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQI-KL 427

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           +I    A+I MY++CGS++ A  VF ++    + V  +N++ISG A HG G  +I +   
Sbjct: 428 SISGHNAMIFMYSRCGSMEDAKRVFQEMAT--RDVVSYNTLISGFAAHGHGVEAINLMST 485

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499
           M+  G++PD VTF+ VL ACSH GL+EEG++ FES+ +    P ++HY CMVDLL R G 
Sbjct: 486 MKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD----PAIDHYACMVDLLGRVGE 541

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L++A   ++ MP + ++ ++ +LL A R+H+  ++GE+A  KL +LEPD+  +++LLSN+
Sbjct: 542 LEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNI 601

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A   RW++  ++R+ M   G++K  GWS++E+ G LH+F+ + +SH ++ +I  +L ++
Sbjct: 602 YASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIEL 661

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             K++ AGY+ +   V+ DV+EEEKE +V  HSEKLA+ + L+ S +   IR+ KNLR+C
Sbjct: 662 RKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVC 721

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH A K++S++  R I+VRD  RFH F  G CSC D+W
Sbjct: 722 WDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 148/533 (27%), Positives = 245/533 (45%), Gaps = 84/533 (15%)

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI-HFYSIFGYINNAHKVFEGSLARDLVSY 178
           +R+ +F    Q+H  II   L    +    LI H   +    +  H +F  +L  ++  +
Sbjct: 9   SRVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVF 68

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
            +++  Y+ +++    + +F  MQ   ++PDAF +  +  +         G  FHA V K
Sbjct: 69  TSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNG-----GIGFHAHVLK 123

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSSMISGYTREGKIER 297
            LG  GS+  ++ AVI+MYA+ G +  A +VF  +    +  A W++M+SGY +     +
Sbjct: 124 -LGH-GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQ 181

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQV-------------------------GGFSQ---- 328
           A+ LFD M +R++++WTAM++GY++V                          G++Q    
Sbjct: 182 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLA 241

Query: 329 --ALELFGKMESLGIHPDEVTMVAVLRACVGLG----ALDFGKRLHQQYIENVVFGRNIF 382
              L LF +M + GI PDE T V V+ AC   G    A    + LHQ+ I+      N F
Sbjct: 242 EEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQ-----LNCF 296

Query: 383 LTTAVIDMYAKCGSIDTALSVF------------------YKIPKNL------------K 412
           + TA++DMYAKCGSI  A  +F                  Y    NL            +
Sbjct: 297 VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGR 356

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            V  +NS+I+G AQ+G    +I +F+EM     L PD VT V+V+ AC H G +E G   
Sbjct: 357 NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV 416

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA--ACRLH 529
              +    IK  +  +  M+ + +R G +++A  + Q M    + V +  L++  A   H
Sbjct: 417 VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA-TRDVVSYNTLISGFAAHGH 475

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
               I  ++  K   +EPD    ++ +    +     EE R+V + + D  I 
Sbjct: 476 GVEAINLMSTMKEGGIEPDR-VTFIGVLTACSHAGLLEEGRKVFESIKDPAID 527



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 174/365 (47%), Gaps = 27/365 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++LL +   C S+  A +I  ++      + ++ + +IS +   G    L  +R LF+ +
Sbjct: 299 TALLDMYAKCGSIGAARRIFDEL--GAYRNSVTWNAMISAYTRVG---NLDSARELFNTM 353

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+  WN+++ GY+++     A+ L+  M++   ++P+  T   V+++C  L + + G
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +   + +  ++  +   NA+I  YS  G + +A +VF+    RD+VSYNTLI+G+A  
Sbjct: 414 NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAH 473

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ L   M++  I+PD  TF+ + +AC+       G++    V++++     +  
Sbjct: 474 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK----VFESIKDPAIDHY 529

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQ 304
               ++++  + G +  A+R    M M      + S+++      ++E     A +LF +
Sbjct: 530 --ACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLF-E 586

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           ++  +  ++  + + Y+  G +     +   M+  G+           +   G   +++G
Sbjct: 587 LEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV-----------KKTTGWSWVEYG 635

Query: 365 KRLHQ 369
            +LH+
Sbjct: 636 GKLHK 640


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/699 (36%), Positives = 387/699 (55%), Gaps = 44/699 (6%)

Query: 24  ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
            + IHG  V  GL+  +  ++ ++  ++  G  N    +++ F + +N N+  WNT++  
Sbjct: 267 GMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLN---EAQMSFVKNNNKNVVSWNTMISA 323

Query: 83  YSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           +S      EA  L   M  +G  +  N  T   VL +C      +S  ++H +  +   +
Sbjct: 324 FSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ 383

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
             + + NA I  Y+  G +N+A KVF G   + + S+N LI G+AQ  +P  AL L  +M
Sbjct: 384 H-VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQM 442

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             S  QPD FT  ++  AC  L   + GK+ H  V +N                      
Sbjct: 443 TYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRN---------------------- 480

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                       G+       +S++S Y   GK   AR LFD+M  ++LVSW AMISGYS
Sbjct: 481 ------------GLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYS 528

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G   ++L LF K  S GI   E+ +V+V  AC  L AL  GK  H  Y+   +   + 
Sbjct: 529 QNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHG-YVLKALQTEDA 587

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           F+  ++IDMYAK G I  +  VF  +    K V+ +N+II     HG G+ +I ++  M+
Sbjct: 588 FVGCSIIDMYAKSGCIKESRKVFDGLKD--KNVASWNAIIVAHGIHGHGKEAIELYERMK 645

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRL 500
            +G  PD  T++ +L AC H GLVEEG ++F+ M N+  I+P++EHY C++D+LAR GRL
Sbjct: 646 KVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRL 705

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
           D+A  L+  MP +A++ IW +LL +CR     +IGE   +KLL+LEPD   +YVLLSN+ 
Sbjct: 706 DDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLY 765

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           A   +W+  R+VR++M + G+QK  G S+IE  G ++ F+      P++ EI ++ + + 
Sbjct: 766 AGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLE 825

Query: 621 MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
            ++   GY PNT  V+ +V EEEK  ++  HSEKLA++FGL+ +    T+RI KNLRIC 
Sbjct: 826 ERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICA 885

Query: 681 DCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           DCH A KL+S+   REI+VRD  RFH F+ G CSC D+W
Sbjct: 886 DCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 254/518 (49%), Gaps = 46/518 (8%)

Query: 14  LLESC---KSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           LL++C   K ++   ++H  +  S    N ++ +++LI  +A+ G       SR++F  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSP---LDSRLVFDNM 105

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +  N+  WN L+ GY+R+    + + ++  ++S     P+NFTFP V+ +C  +   + G
Sbjct: 106 ETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG 165

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH  +IK GL  D+F+ NAL+  Y   G ++ A KVF+     +LVS+N++I  +++ 
Sbjct: 166 EVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSEN 225

Query: 189 KEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                +  L  +M  +  + PD  T V +   C    +  IG   H +  K LG +   +
Sbjct: 226 GFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK-LG-LSEEV 283

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++  A++ MY+KCG +N A+  F     +K+  +W++MIS ++ EG +  A  L  +M  
Sbjct: 284 MVNNAMVYMYSKCGYLNEAQMSF-VKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM-- 340

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                      +++   +  +EVT++ VL AC+    L   K L
Sbjct: 341 ---------------------------QIQGEEMKANEVTILNVLPACLDKLQLRSLKEL 373

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H     +    +++ L+ A I  YAKCG++++A  VF+ I    KTVS +N++I G AQ+
Sbjct: 374 HGYSFRHCF--QHVELSNAFILAYAKCGALNSAEKVFHGIGD--KTVSSWNALIGGHAQN 429

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
           G    ++ +  +M   G +PD  T  ++L AC+H   ++ GK+    +L  G++      
Sbjct: 430 GDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVG 489

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             ++      G+   A  L   M  D N V W A+++ 
Sbjct: 490 TSLLSHYIHCGKASSARVLFDRMK-DKNLVSWNAMISG 526



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 215/442 (48%), Gaps = 44/442 (9%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           ++L +L +C     L+   ++HG        H   S+  I  +A  G  N    +  +F 
Sbjct: 353 TILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNS---AEKVFH 409

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            I +  +  WN L+ G++++  P++AL L   M   G   P+ FT   +L +CA L S +
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG-QQPDWFTISSLLLACAHLKSLQ 468

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +IH ++++ GLE D F+  +L+  Y   G  ++A  +F+    ++LVS+N +I+GY+
Sbjct: 469 YGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYS 528

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q   P  +L LFRK     IQ      V++F AC++L+  R+GK+ H  V K L     +
Sbjct: 529 QNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQT--ED 586

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +  ++I+MYAK G +  + +VF  +   K+ A+W+++I  +                 
Sbjct: 587 AFVGCSIIDMYAKSGCIKESRKVFDGL-KDKNVASWNAIIVAHG---------------- 629

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                     I G+ +     +A+EL+ +M+ +G  PD  T + +L AC   G ++ G +
Sbjct: 630 ----------IHGHGK-----EAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLK 674

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             ++     +    +     +IDM A+ G +D AL +  ++P+      +++S++     
Sbjct: 675 YFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADN-RIWSSLLRSCRT 733

Query: 427 HGLGETSIAVFREMELMGLKPD 448
            G  E    V +  +L+ L+PD
Sbjct: 734 FGALEIGEKVAK--KLLELEPD 753



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 166/341 (48%), Gaps = 11/341 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SSLL      KSL+   +IHG ++ +GL       + L+S +   G  +    +R+LF +
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASS---ARVLFDR 511

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + N+  WN ++ GYS++  P E+L L+   LS+GI S +      V  +C++LS+ + 
Sbjct: 512 MKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQS-HEIAIVSVFGACSQLSALRL 570

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G + H +++K     D F+  ++I  Y+  G I  + KVF+G   +++ S+N +I  +  
Sbjct: 571 GKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGI 630

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ L+ +M+     PD FT++ +  AC        G ++   + +N   +   +
Sbjct: 631 HGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEM-QNFNLIEPKL 689

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFD 303
                +I+M A+ G ++ A R+ + M        WSS++      G +E     A++L  
Sbjct: 690 EHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLL- 748

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +++     ++  + + Y+ +G +     +   M+ +G+  D
Sbjct: 749 ELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKD 789



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 57/324 (17%)

Query: 216 MFSACTELNDPRIGKQFHAVV-----YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
           +  AC    D   G++ H  V     Y+N      + +L T +I MYA CG         
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRN------DYVLNTRLIKMYAMCG--------- 93

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                       S + S           R +FD M+ ++L+ W A++SGY++ G +   +
Sbjct: 94  ------------SPLDS-----------RLVFDNMETKNLIQWNALVSGYTRNGLYGDVV 130

Query: 331 ELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           ++F  + S     PD  T  +V++AC G+  +  G+ +H   I+ +    ++F+  A++ 
Sbjct: 131 KVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIK-MGLVLDVFVGNALVG 189

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPD 448
           MY KCG++D A+ VF  +P+    +  +NS+I   +++G    S  +  EM    GL PD
Sbjct: 190 MYGKCGAVDEAMKVFDFMPET--NLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPD 247

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            VT VT+L  C+  G V+ G       +  G+  ++     MV + ++ G L+EA     
Sbjct: 248 VVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA----- 302

Query: 509 SMPY----DANSVIWRALLAACRL 528
            M +    + N V W  +++A  L
Sbjct: 303 QMSFVKNNNKNVVSWNTMISAFSL 326


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/568 (41%), Positives = 348/568 (61%), Gaps = 41/568 (7%)

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC--PALWLFRKM-QDSCIQPDAF 211
           S +G I+ A K+F      ++ S+N++I G +Q + P   P + LFRKM +     P+ F
Sbjct: 35  SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVI-LFRKMVRRGYPNPNTF 93

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T   +  AC+ ++    G+Q HA V K+    GS+  ++TA++N YAKC  + +A +VF 
Sbjct: 94  TMAFVLKACSIVSALEEGQQVHANVLKS--GFGSSPFVETALVNFYAKCEDIVLASKVF- 150

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                                          D++  R+LV+W+ MISGY+++G  ++AL 
Sbjct: 151 -------------------------------DEITDRNLVAWSTMISGYARIGLVNEALG 179

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF  M+  G+ PDEVTMV+V+ AC   GALD GK +H  YI   +   ++ L+TA+++MY
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA-YINKQLIETDLELSTALVNMY 238

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKCG I+ A  VF  +P  +K    ++S+I GLA +GL E ++  F  ME   +KP+ VT
Sbjct: 239 AKCGCIERAKEVFDAMP--VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 296

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F+ VL AC+H GLV EG++++ SML +GI P ME YGCMVDLL R   +++A  L+++MP
Sbjct: 297 FIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMP 356

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
              N VIWR LL  C+  +N    E+  Q+LL+LEP +  +Y+LLSN+ A   +WE+  Q
Sbjct: 357 ISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQ 416

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRK M   GI+  PG S IE +G +H F+    SHP+  E+  +L+D++ ++ + G+ P 
Sbjct: 417 VRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPG 476

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
              V+ +V +EEKE  +  HSE+LA+A+GL+ +++   IRI KNLR+CGDCH   K++S 
Sbjct: 477 ISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISA 536

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            YRREI+VRD +RFH F  G+CSC DFW
Sbjct: 537 EYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 219/425 (51%), Gaps = 48/425 (11%)

Query: 26  QIHGQIVHSGLNHHISS-----SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           QIH +++   +   ISS      ++I F ALS   + +  +R LFSQI  PNIF WN+++
Sbjct: 6   QIHARLLTHAMP--ISSISFGLCKIIGFCALSPYGD-IDYARKLFSQIQRPNIFSWNSMI 62

Query: 81  RGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           RG S+S +P +E ++L+  M+ +G  +PN FT  FVL +C+ +S+ + G Q+H +++K G
Sbjct: 63  RGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSG 122

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
                F+  AL++FY+    I  A KVF+    R+LV+++T+I+GYA++     AL LFR
Sbjct: 123 FGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFR 182

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
            MQ + + PD  T V++ SAC        GK  HA + K L  + +++ L TA++NMYAK
Sbjct: 183 DMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL--IETDLELSTALVNMYAK 240

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CG +  A+ VF  M + K T AWSSMI G    G  E                       
Sbjct: 241 CGCIERAKEVFDAMPV-KDTKAWSSMIVGLAINGLAE----------------------- 276

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG- 378
                    ALE F +ME   + P+ VT + VL AC   G +  G+R     +E   FG 
Sbjct: 277 --------DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE---FGI 325

Query: 379 -RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++ L   ++D+  +   ++ A ++   +P +   V     ++       L ++ +   
Sbjct: 326 VPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQ 385

Query: 438 REMEL 442
           R +EL
Sbjct: 386 RLLEL 390


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/726 (34%), Positives = 407/726 (56%), Gaps = 49/726 (6%)

Query: 1   MKRLVLEHSS--LLALLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQLISFFALSGCK 55
           M+R VL  +S   + +L+ C  L Q     ++H  ++ SG   +I  + L+  +   G  
Sbjct: 257 MQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRV 316

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
           +   R   +F +ID  +   WN+++  Y ++    EA+   + ML +G   P++     +
Sbjct: 317 DSALR---VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEML-RGGFQPDHACIVSL 372

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
            ++   L    +G ++H + IK  L+ D  + N L+  Y    YI  +  VF+    +D 
Sbjct: 373 SSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDH 432

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +S+ T+I  YAQ      AL +FR+ Q   I+ D     ++  AC+ L    + KQ H  
Sbjct: 433 ISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCY 492

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
             +N G +  ++++K  +I++Y +CG                                ++
Sbjct: 493 AIRN-GLL--DLVVKNRIIDIYGECG--------------------------------EV 517

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
             + ++F+ ++Q+D+V+WT+MI+ Y+  G  ++AL LF +M+S  + PD V +V++L A 
Sbjct: 518 YHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAI 577

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
            GL +L  GK +H   I    F     + ++++DMY+ CGS+  AL VF  +    K + 
Sbjct: 578 GGLSSLAKGKEVHGFLIRRN-FHMEEAIVSSLVDMYSGCGSLSGALKVFNAV--KCKDMV 634

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
           L+ ++I+    HG G+ +I +F+ M   G+ PD V+F+ +L ACSH  LV EGK + + M
Sbjct: 635 LWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMM 694

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
           ++ Y ++P  EHY C+VDLL R G+ +EAY  I+SMP    SV+W +LL ACR+H+N ++
Sbjct: 695 MSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHEL 754

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
             +A  +LL+LEPD+  +YVL+SN+ AE  +W  A++VR  + + G++K P  S+IE   
Sbjct: 755 AVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGN 814

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
            +H F     SH   + I L L ++T +L K  GY  +T  V+ DV EEEK  V+  HSE
Sbjct: 815 NVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSE 874

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           +LA++FGLIN+R    +RI KNLR+CGDCH   KL+S+++ R+I+VRDA RFH F  G+C
Sbjct: 875 RLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSC 934

Query: 714 SCMDFW 719
           SC DFW
Sbjct: 935 SCGDFW 940



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 218/454 (48%), Gaps = 43/454 (9%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           +L L+ + K++ Q +Q+H   V +G               + G    +  +R+LF  + +
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSML--SKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             +F WN L+  Y  S S  EAL +Y +M   +   V+P+  T   VL +       + G
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE-GSLARDLVSYNTLINGYAQ 187
           C++H   +K GL+   F+ NALI  Y+  G +++A +VFE     RD+ S+N++I+G  Q
Sbjct: 184 CEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQ 243

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL LFR MQ + +  +++T V +   CTEL    +G++ HA + K+    GS +
Sbjct: 244 NGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS----GSEV 299

Query: 248 LLK-TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            ++  A++ MY KCG ++ A RVF  +   K   +W+SM+S Y                 
Sbjct: 300 NIQCNALLVMYTKCGRVDSALRVFREID-EKDYISWNSMLSCYV---------------- 342

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                          Q G +++A+E   +M   G  PD   +V++  A   LG L  GK 
Sbjct: 343 ---------------QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE 387

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   I+      +  +   ++DMY KC  I+ +  VF ++   +K    + +II+  AQ
Sbjct: 388 VHAYAIKQ-RLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRM--RIKDHISWTTIITCYAQ 444

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
                 ++ +FRE +  G+K D +   ++L ACS
Sbjct: 445 SSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 194/415 (46%), Gaps = 52/415 (12%)

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           T ++   +  + ++AL L TS       SP    + +VL+  A   +   G Q+H H + 
Sbjct: 29  TSLKQLCKEGNLRQALRLLTSQTPGR--SPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVA 86

Query: 138 FG-LEFDL-FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
            G LE D  F+   L+  Y   G + +A  +F+G  +R + S+N LI  Y      C AL
Sbjct: 87  TGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEAL 146

Query: 196 WLFRKMQ---DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            ++R M+    S + PD  T  ++  A     D R G + H +  K+             
Sbjct: 147 GVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKH------------- 193

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-DQRDLV 311
                                G+ +ST   +++I+ Y + G ++ A ++F+ M D RD+ 
Sbjct: 194 ---------------------GLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVA 232

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           SW +MISG  Q G F QAL+LF  M+   +  +  T V VL+ C  L  L+ G+ LH   
Sbjct: 233 SWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL 292

Query: 372 IENVVFGRNIFLT-TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           +++   G  + +   A++ MY KCG +D+AL VF +I +  K    +NS++S   Q+GL 
Sbjct: 293 LKS---GSEVNIQCNALLVMYTKCGRVDSALRVFREIDE--KDYISWNSMLSCYVQNGLY 347

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
             +I    EM   G +PD    V++  A  H G +  GK+       Y IK +++
Sbjct: 348 AEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHA----YAIKQRLD 398


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/516 (43%), Positives = 332/516 (64%), Gaps = 39/516 (7%)

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++PD  T V++  AC +L +   GK  H+   K LG +  N+ +  A+++MY KC     
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSY-SKELG-LDENLSVNNAILDMYCKCD---- 60

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
                                        IE A+++F+++ ++D++SWT+M+SG ++ G 
Sbjct: 61  ----------------------------DIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 92

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
           F ++L LF KM+   I PDE+T+V VL AC   GALD GK +H   I+      ++ L T
Sbjct: 93  FQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHL-LIDKFEINCDLVLET 151

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++DMYAKCGSID AL VF ++   ++ V  +N++I GLA HG GE +I++F +ME   L
Sbjct: 152 ALVDMYAKCGSIDLALQVFRRM--RVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKL 209

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAY 504
            PD VTF+ +LCACSH GLV+EG   F++M N + I+P+MEHYGC+VDLL R  ++D+A 
Sbjct: 210 MPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 269

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
             I++MP  ANSV+W  LL ACR   +  + E   +++++LEPD    YV+LSN+ A   
Sbjct: 270 AFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVS 329

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           +W+ A ++RK M + GI+K PG S+IE NG +H+F+A  +SH QT++I  M+++MT ++ 
Sbjct: 330 QWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVN 389

Query: 625 -SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
              G+VP T  V+FD++EEEKE  +  HSEKLA+A GLI++ S   IRI KNLR+C DCH
Sbjct: 390 LDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCH 449

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              K+ S++Y REI+ RD  RFH FK+G+CSCMDFW
Sbjct: 450 SFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 39/345 (11%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           + P+  T   ++ +CA+L + + G  +H +  + GL+ +L + NA++  Y     I +A 
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           +VF     +D++S+ ++++G A+      +L LFRKMQ   I+PD  T V + SAC +  
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 225 DPRIGKQFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
               GK  H ++ K  + C   +++L+TA+++MYAKCG +++A +VF  M + ++   W+
Sbjct: 127 ALDQGKYIHLLIDKFEINC---DLVLETALVDMYAKCGSIDLALQVFRRMRV-RNVFTWN 182

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           +MI G    G  E A  LFDQM+   L+                               P
Sbjct: 183 AMIGGLAMHGHGEDAISLFDQMEXDKLM-------------------------------P 211

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           D+VT +A+L AC   G +D G  + Q           +     V+D+  +   +D AL+ 
Sbjct: 212 DDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAF 271

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
              +P  +K  S+  + + G  + G G   +A      ++ L+PD
Sbjct: 272 IENMP--IKANSVLWATLLGACRSG-GHFDLAEKIXRRVIELEPD 313



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 169/344 (49%), Gaps = 22/344 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHS-----GLNHHISSSQLISFFALSGCK-NGLFRSRI 63
           ++++L+ +C  L    +  G+++HS     GL+ ++S +  I       CK + +  ++ 
Sbjct: 13  TMVSLVPACAQLGNLER--GKLLHSYSKELGLDENLSVNNAILDMY---CKCDDIESAQE 67

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARL 122
           +F++I   ++  W +++ G ++S   QE+L L+  M L K  + P+  T   VL++CA+ 
Sbjct: 68  VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHK--IEPDEITLVGVLSACAQT 125

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            +   G  IH  I KF +  DL +  AL+  Y+  G I+ A +VF     R++ ++N +I
Sbjct: 126 GALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMI 185

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--LNDPRIGKQFHAVVYKNL 240
            G A       A+ LF +M+   + PD  TF+A+  AC+   L D  +   F A+  KN 
Sbjct: 186 GGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA-MFQAM--KNK 242

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +   M     V+++  +   ++ A      M +  ++  W++++      G  + A +
Sbjct: 243 FQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEK 302

Query: 301 LFDQMD--QRDLVSWTAMISG-YSQVGGFSQALELFGKMESLGI 341
           +  ++   + D      M+S  Y+ V  +  AL+L  +M++ GI
Sbjct: 303 IXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGI 346


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 356/606 (58%), Gaps = 12/606 (1%)

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLARDLVS 177
           R SS     ++H  I    L+   ++   L+   +   ++   +    +F      +  +
Sbjct: 17  RCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFA 76

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +  LI  YA       AL  +  M+   + P +FTF A+FSAC  +    +G Q HA   
Sbjct: 77  WTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTL 136

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
             LG   S++ +  AVI+MY KCG +  A  VF  M   +   +W+ +I  YTR G +  
Sbjct: 137 L-LGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMP-ERDVISWTGLIVAYTRIGDMRA 194

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR LFD +  +D+V+WTAM++GY+Q      ALE+F ++   G+  DEVT+V V+ AC  
Sbjct: 195 ARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQ 254

Query: 358 LGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
           LGA  +   + +   E+  FG   N+ + +A+IDMY+KCG+++ A  VF  + +  + V 
Sbjct: 255 LGASKYANWI-RDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRE--RNVF 311

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            ++S+I G A HG    +I +F +M   G+KP+ VTFV VL ACSH GLV++G+Q F SM
Sbjct: 312 SYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASM 371

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              YG+ P  E Y CM DLL+R G L++A  L+++MP +++  +W ALL A  +H N  +
Sbjct: 372 EKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDV 431

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE-HN 593
            EIA ++L +LEPD+  +Y+LLSN  A   RW++  +VRKL+ +  ++K PGWS++E  N
Sbjct: 432 AEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKN 491

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
           G +H+F+A   SHP+  EI+  L D+  +LK  GY PN   + + +++ EK  ++  HSE
Sbjct: 492 GMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSE 551

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLALAFGL+++    TI+I KNLRIC DCH+     S++  R+I+VRD  RFH F  G C
Sbjct: 552 KLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGAC 611

Query: 714 SCMDFW 719
           SC +FW
Sbjct: 612 SCSNFW 617



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 215/483 (44%), Gaps = 74/483 (15%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFAL-SGCKNGLFRS 61
           R VLE   ++ +LE C SL QA ++H QI    L    SS  L     L +   +    S
Sbjct: 4   RRVLEWE-VVRILERCSSLNQAKEVHAQIYIKNLQQ--SSYVLTKLLRLVTALPHVPLHS 60

Query: 62  --RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
             R+LFSQ+  PN F W  L+R Y+      +AL  Y+SM  K  VSP +FTF  + ++C
Sbjct: 61  YPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSM-RKRRVSPISFTFSALFSAC 119

Query: 120 ARLSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHF------------------------- 153
           A +     G Q+H   +   G   DL++ NA+I                           
Sbjct: 120 AAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISW 179

Query: 154 ------YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
                 Y+  G +  A  +F+G   +D+V++  ++ GYAQ   P  AL +FR+++D  ++
Sbjct: 180 TGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVE 239

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
            D  T V + SAC +L   +       +   +   VG N+L+ +A+I+MY+KCG +  A 
Sbjct: 240 IDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAY 299

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
            VF  M   ++  ++SSMI G+   G   RAR                            
Sbjct: 300 DVFKGM-RERNVFSYSSMIVGFAIHG---RAR---------------------------- 327

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
            A++LF  M   G+ P+ VT V VL AC   G +D G++L     +         L   +
Sbjct: 328 AAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACM 387

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
            D+ ++ G ++ AL +   +P      +++ +++   A H  G   +A      L  L+P
Sbjct: 388 TDLLSRAGYLEKALQLVETMPME-SDGAVWGALLG--ASHVHGNPDVAEIASKRLFELEP 444

Query: 448 DGV 450
           D +
Sbjct: 445 DNI 447


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/642 (37%), Positives = 374/642 (58%), Gaps = 46/642 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI--HFYSIFGYINNAHKVFEGSLA 172
           +L +C  L + K   Q+H ++ K GL+ D  I   L+     S+   ++ A ++F     
Sbjct: 11  LLTNCRSLKNLK---QVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPN 67

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP-DAFTFVAMFSACTELNDPRIGKQ 231
            D+  +NTLI G A+   P  +L  F +M+     P D+F+F  +  A         G Q
Sbjct: 68  PDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQ 127

Query: 232 FH--AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA--------- 280
            H  A+V+     + +++ + T +++MY++CG +  A++VF  M      A         
Sbjct: 128 LHCQAIVHG----LDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACF 183

Query: 281 ---------------------AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
                                +W+ M++GYT+ G++E AR+LF +M  +D VSW+ MI G
Sbjct: 184 RCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVG 243

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           ++  G F +A   F +++ +G+ P+EV++   L AC   GA++FGK LH  +IE   F  
Sbjct: 244 FAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHG-FIEKSGFLW 302

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
            + +  A++D Y+KCG++  A  VF ++P+    VS + S+I+GLA HG GE +I +F E
Sbjct: 303 MVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVS-WTSMIAGLAMHGYGEEAIQLFHE 361

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           ME  G++PDG+ F+++L ACSH GL+E+G ++F  M + Y I+P +EHYGCMVDL  R G
Sbjct: 362 MEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAG 421

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           +LD+AY  I  MP    ++IWR LL AC +H N K+ E   ++L +L+P++   +VLLSN
Sbjct: 422 QLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSN 481

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + A   +W++   VR+ M D  + K PGWS IE +  ++ F+A +  +  T+E    LK+
Sbjct: 482 IYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKE 541

Query: 619 MTMKLKSAG-YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           + +KL+  G Y+P    V+ D+++EEKE  VS HSEKLA+AFG+        IRI KNLR
Sbjct: 542 IMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLR 601

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +C DCH   KL+S++Y  EI+VRD  RFH FK G+CSC D+W
Sbjct: 602 VCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 204/481 (42%), Gaps = 102/481 (21%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           +LL +C+SLK   Q+H  +  +GL+   I + +L+   A+S   + L  +R LF    NP
Sbjct: 10  SLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVS-VPDALDYARRLFLHFPNP 68

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++F+ NTL+RG + SD+PQ +L+ +  M  +     ++F+F F+L + A   S +SG Q+
Sbjct: 69  DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQL 128

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA------------------- 172
           HC  I  GL+  LF+   L+  YS  G++  A KVFE                       
Sbjct: 129 HCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDV 188

Query: 173 ------------RDLVSYNTLINGYAQVKE-----------PCP---------------- 193
                       R+L S+N ++ GY +  E           P                  
Sbjct: 189 KGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNG 248

Query: 194 ----ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--LGCVGSNM 247
               A   FR++Q   ++P+  +     SAC +      GK  H  + K+  L  V  N 
Sbjct: 249 FFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVN- 307

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
               A+++ Y+KCG + MA  VF  M   +S  +W+SMI+G    G  E A QLF +M++
Sbjct: 308 ---NALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEE 364

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                           GI PD +  +++L AC   G ++ G   
Sbjct: 365 S-------------------------------GIRPDGIAFISILYACSHAGLIEKGYEY 393

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
             +  +       I     ++D+Y + G +D A      +P  L T  ++ +++   + H
Sbjct: 394 FYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPV-LPTAIIWRTLLGACSIH 452

Query: 428 G 428
           G
Sbjct: 453 G 453


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/698 (35%), Positives = 390/698 (55%), Gaps = 42/698 (6%)

Query: 27  IHGQ-IVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +H Q ++ +  ++H   S L S   L      L  +R LF  +   N+  WN LM GY  
Sbjct: 34  MHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLH 93

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
             +  E LVL+ +M+S     PN + F   L++C+     K G Q H  + KFGL    +
Sbjct: 94  GGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQY 153

Query: 146 IRNALIHFYSIFGYINNAHKVFE---GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           +++AL+H YS   ++  A +V +   G    D+ SYN+++N   +      A+ + R+M 
Sbjct: 154 VKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMV 213

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           D C+  D  T+V +   C ++ D ++G + HA + +  G +  +  + + +I+MY KCG 
Sbjct: 214 DECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLR--GGLMFDEFVGSMLIDMYGKCG- 270

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                                          ++  AR +FD +  R++V WTA+++ Y Q
Sbjct: 271 -------------------------------EVLNARNVFDGLQNRNVVVWTALMTAYLQ 299

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G F ++L LF  M+  G  P+E T   +L AC G+ AL  G  LH + +E + F  ++ 
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHAR-VEKLGFKNHVI 358

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +  A+I+MY+K GSID++ +VF  +    + +  +N++I G + HGLG+ ++ VF++M  
Sbjct: 359 VRNALINMYSKSGSIDSSYNVFTDMI--YRDIITWNAMICGYSHHGLGKQALQVFQDMVS 416

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLD 501
               P+ VTF+ VL A SH GLV+EG  +   ++ N+ I+P +EHY CMV LL+R G LD
Sbjct: 417 AEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLD 476

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA   +++     + V WR LL AC +HRN  +G    + +L ++P     Y LLSNM A
Sbjct: 477 EAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYA 536

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
           +  RW+    +RKLM +  I+K PG S+++    +H FL+   +HP++ +I   ++ +  
Sbjct: 537 KARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLA 596

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
            +K  GYVPN   V+ DV++E+KE  +SYHSEKLALA+GL+   S   IRI KNLR+C D
Sbjct: 597 LIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDD 656

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A KL+S++  R I+VRDA RFH F+ G+C+C+D W
Sbjct: 657 CHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 163/316 (51%), Gaps = 9/316 (2%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           ++ L    + L+  L++H +++  GL       S LI  +   G    +  +R +F  + 
Sbjct: 227 VMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCG---EVLNARNVFDGLQ 283

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           N N+ +W  LM  Y ++   +E+L L+T M  +G + PN +TF  +LN+CA +++ + G 
Sbjct: 284 NRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTL-PNEYTFAVLLNACAGIAALRHGD 342

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +H  + K G +  + +RNALI+ YS  G I++++ VF   + RD++++N +I GY+   
Sbjct: 343 LLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHG 402

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL +F+ M  +   P+  TF+ + SA + L   + G  +   + +N   +   +  
Sbjct: 403 LGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFK-IEPGLEH 461

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---QMD 306
            T ++ + ++ GL++ AE    T  +     AW ++++        +  R++ +   QMD
Sbjct: 462 YTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMD 521

Query: 307 QRDLVSWTAMISGYSQ 322
             D+ ++T + + Y++
Sbjct: 522 PHDVGTYTLLSNMYAK 537



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 41/257 (15%)

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQY-IENVVFGR-NIFLTTAVIDMYAKCGSIDTA 400
           P    +  +L+ C  +  L FGK +H Q+ I N      +I    +++ +Y KCG +  A
Sbjct: 10  PSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLA 69

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCAC 459
            ++F  +P  L+ V  +N +++G    G     + +F+ M  L    P+   F T L AC
Sbjct: 70  RNLFDAMP--LRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSAC 127

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           SHGG V+EG Q    +  +G+         +V + +R   ++ A  ++ ++P        
Sbjct: 128 SHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVP-------- 179

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
                              G+ + D+       Y  + N L E+ R EEA +V + M D 
Sbjct: 180 -------------------GEHVNDIFS-----YNSVLNALVESGRGEEAVEVLRRMVDE 215

Query: 580 GIQKPPGWSYIEHNGTL 596
            +     W ++ + G +
Sbjct: 216 CV----AWDHVTYVGVM 228


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/716 (33%), Positives = 403/716 (56%), Gaps = 57/716 (7%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN------GLFRSRIL 64
           LL+ C     L+   +IHG +V SG +        +  FA++G +N       +  +R +
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFS--------LDLFAMTGLENMYAKCRQVHEARKV 192

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++   ++  WNT++ GYS++   + AL +   M  + +  P+  T   VL + + L  
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENL-KPSFITIVSVLPAVSALRL 251

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G +IH + ++ G +  + I  AL+  Y+  G +  A  +F+G L R++VS+N++I+ 
Sbjct: 252 IRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDA 311

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y Q + P  A+ +F+KM D  ++P   + +    AC +L D   G+  H           
Sbjct: 312 YVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH----------- 360

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                                  ++   + + ++ +  +S+IS Y +  +++ A  +F +
Sbjct: 361 -----------------------KLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGK 397

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  R +VSW AMI G++Q G   +AL  F +M++  + PD  T V+V+ A   L      
Sbjct: 398 LQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA 457

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K +H   + N +  +N+F+TTA++DMYAKCG+I  A  +F  + +  + V+ +N++I G 
Sbjct: 458 KWIHGVVMRNCL-DKNVFVTTALVDMYAKCGAIMIARLIFDMMSE--RHVTTWNAMIDGY 514

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
             HG+G+ ++ +F EM+   ++P+GVTF++V+ ACSH GLVE G + F  M  NY I+P 
Sbjct: 515 GTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPS 574

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           M+HYG MVDLL R GRL+EA+  I  MP      ++ A+L AC++H+N    E   ++L 
Sbjct: 575 MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLF 634

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L P+ G ++VLL+N+      WE+  QVR  M   G++K PG S +E    +H F +  
Sbjct: 635 ELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGS 694

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            +HP +K+I   L+ +  ++K AGYVP+T  ++  ++++ KE ++S HSEKLA++FGL+N
Sbjct: 695 TAHPSSKKIYAFLEKLICQIKEAGYVPDT-NLILGLEDDVKEQLLSSHSEKLAISFGLLN 753

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + +  TI + KNLR+C DCH A K +S +  REI+VRD  RFH FK G CSC D+W
Sbjct: 754 TTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 133/262 (50%), Gaps = 4/262 (1%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + ++S + R G ++ A ++F+ +D++  V +  M+ G+++V    +AL+ F +M    + 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVE 132

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P       +L+ C     L  GK +H   +++  F  ++F  T + +MYAKC  +  A  
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GFSLDLFAMTGLENMYAKCRQVHEARK 191

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF ++P+  + +  +N+I++G +Q+G+   ++ +   M    LKP  +T V+VL A S  
Sbjct: 192 VFDRMPE--RDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSAL 249

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
            L+  GK+     +  G    +     +VD+ A+ G L  A  L   M  + N V W ++
Sbjct: 250 RLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSM 308

Query: 523 LAACRLHRNAKIGEIAGQKLLD 544
           + A   + N K   +  QK+LD
Sbjct: 309 IDAYVQNENPKEAMVIFQKMLD 330


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/682 (36%), Positives = 402/682 (58%), Gaps = 43/682 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV---LNSCA 120
           LF  I  P+ + +NTL+   + S S  +A  L+  M  +  V+ N          L S A
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 121 R----LSSFKSGCQIHCHIIKF----------GL-----EFDLFIRNALIHFYSIFGYIN 161
           R    L+  K     +  +  +          GL     E+D+   NAL+  Y  +G ++
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMS 210

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A ++F+    RD+VS+N +++GYA+  +   A    R++ D+    D FT+ A+ S   
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAVVSGYA 266

Query: 222 E---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +   L + R  + F A+  +N   V  N     A++  Y +  +M+ A+ +F+ M   ++
Sbjct: 267 QNGMLEEAR--RVFDAMPERN--AVSWN-----AMVAAYIQRRMMDEAKELFNMMP-CRN 316

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
            A+W++M++GY + G +E A+ +FD M Q+D VSW AM++ YSQ G   + L+LF +M  
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G   +      VL  C  + AL+ G +LH + I    +G   F+  A++ MY KCG+++
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNME 435

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A + F ++ +  + V  +N++I+G A+HG G+ ++ +F  M     KPD +T V VL A
Sbjct: 436 DARNAFEEMEE--RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLVE+G  +F SM  ++G+  + EHY CM+DLL R GRL EA+ L++ MP++ +S 
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL A R+HRN ++G  A +K+ +LEP++   YVLLSN+ A + +W +AR++R +M+
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           + G++K PG+S+IE    +H F A    HP+ ++I   L+D+ M++K AGYV  T  V+ 
Sbjct: 614 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 673

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           DV+EEEKE ++ YHSEKLA+A+G++N      IR+ KNLR+CGDCH AFK +S I  R I
Sbjct: 674 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 733

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           ++RD+ RFH F+ G+CSC D+W
Sbjct: 734 LLRDSNRFHHFRGGSCSCGDYW 755



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 185/420 (44%), Gaps = 62/420 (14%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           LE ++   N  I  +   G + +A ++F     R   +YN ++ GY+       A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 200 KMQDSCIQPDAFTFVAMFSA---CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
            +     +PD +++  +  A    + L D R    F  +  ++   V  N++     I+ 
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADAR--GLFDEMPVRD--SVTYNVM-----ISS 140

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           +A  GL+++A   F  +   K   +W+ M++ Y R G++E AR LF+   + D++SW A+
Sbjct: 141 HANHGLVSLARHYFD-LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNAL 199

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           +SGY Q G  S+A ELF +M       D V+   ++      G +   +RL      +  
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLF-----DAA 250

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------------------------- 410
             R++F  TAV+  YA+ G ++ A  VF  +P+                           
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 411 ---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
               + V+ +N++++G AQ G+ E + AVF  M     + D V++  +L A S GG  EE
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQGGCSEE 366

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRALLA 524
             Q F  M   G       + C++   A    L+   + +G +    Y     +  ALLA
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 149/420 (35%), Gaps = 112/420 (26%)

Query: 55  KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           +NG +  +R LF+     ++  WN LM GY +     EA  L+  M  + +VS N     
Sbjct: 174 RNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN----- 228

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +++  AR        +    +       D+F   A++  Y+  G +  A +VF+    R
Sbjct: 229 IMVSGYARRGDMVEARR----LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQ---------------------------DSCI 206
           + VS+N ++  Y Q +    A  LF  M                            D+  
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344

Query: 207 QPDAFTFVAMFSA-----------------------------------CTELNDPRIGKQ 231
           Q DA ++ AM +A                                   C ++     G Q
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 232 FHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            H  + +    +GC   N LL      MY KCG M  A   F  M   +   +W++MI+G
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLA-----MYFKCGNMEDARNAFEEM-EERDVVSWNTMIAG 458

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y R G        F +                       +ALE+F  M +    PD++T+
Sbjct: 459 YARHG--------FGK-----------------------EALEIFDMMRTTSTKPDDITL 487

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V VL AC   G ++ G         +          T +ID+  + G +  A  +   +P
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 73/342 (21%)

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---- 296
           G +   ++     I  + + G +  AER+F+ M   +ST+ +++M++GY+  G++     
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMP-RRSTSTYNAMLAGYSANGRLPLAAS 90

Query: 297 ---------------------------RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                                       AR LFD+M  RD V++  MIS ++  G  S A
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACV---------GL-----------------GALDF 363
              F     L    D V+   +L A V         GL                 G + +
Sbjct: 151 RHYF----DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 206

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK    + + + + GR++     ++  YA+ G +  A  +F   P  ++ V  + +++SG
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP--VRDVFTWTAVVSG 264

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            AQ+G+ E +  VF  M     + + V++  ++ A     +++E K+ F  M    +   
Sbjct: 265 YAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVA-- 318

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +  M+   A+ G L+EA  +  +MP   ++V W A+LAA
Sbjct: 319 --SWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 58/295 (19%)

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I+ + R G++  A +LF  M +R   ++ AM++GYS  G    A  LF  +      PD 
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            +   +L A                                     A   S+  A  +F 
Sbjct: 101 YSYNTLLHAL------------------------------------AVSSSLADARGLFD 124

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++P  ++    +N +IS  A HGL    +++ R    +  + D V++  +L A    G V
Sbjct: 125 EMP--VRDSVTYNVMISSHANHGL----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRV 178

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EE +  F S   + +      +  ++    + G++ EA  L   MP   + V W  +++ 
Sbjct: 179 EEARGLFNSRTEWDVI----SWNALMSGYVQWGKMSEARELFDRMP-GRDVVSWNIMVSG 233

Query: 526 CRLHRNAKIGE-IAGQKLLDLEPDHGA-HYVLLSNMLAETYRWEEARQVRKLMDD 578
                 A+ G+ +  ++L D  P      +  + +  A+    EEAR+V   M +
Sbjct: 234 Y-----ARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 108/261 (41%), Gaps = 46/261 (17%)

Query: 6   LEHSSLLALLESCK---SLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFR 60
           +  S+   +L +C    +L+  +Q+HG+++ +G  +   + ++ L  +F    C N +  
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFK---CGN-MED 436

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F +++  ++  WNT++ GY+R    +EAL ++  M+      P++ T   VL +C+
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACS 495

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                + G         + +  D  +     H+  +   +  A ++ E   A DL     
Sbjct: 496 HSGLVEKGISYF-----YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE---AHDL----- 542

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
                               M+D   +PD+  + A+  A     +P +G+     +++  
Sbjct: 543 --------------------MKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE-- 580

Query: 241 GCVGSNMLLKTAVINMYAKCG 261
                N  +   + N+YA  G
Sbjct: 581 -LEPENAGMYVLLSNIYASSG 600


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/714 (35%), Positives = 392/714 (54%), Gaps = 45/714 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHI--SSSQLISFFALSGCKNGLFRSRILFS 66
            +SLL+   S  +L    Q H   + +G++  I    + L  +   S  K     +   F 
Sbjct: 376  ASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKT----AHEFFL 431

Query: 67   QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
              +  N+ +WN ++  Y   D+  E+  ++T M  +GI  PN FT+P +L +C+ L +  
Sbjct: 432  STETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI-EPNQFTYPSILRTCSSLRAVD 490

Query: 127  SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
             G QIH  ++K G +F++++ + LI  Y+  G +++A K+F     +D+VS+  +I GYA
Sbjct: 491  LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550

Query: 187  QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
            Q ++   AL LF++MQD  I  D   F +  SAC  +     G+Q HA       CV   
Sbjct: 551  QHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHA-----QACVS-- 603

Query: 247  MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                                       G S   +  ++++S Y R GK+  A   FD++ 
Sbjct: 604  ---------------------------GYSDDLSVGNALVSLYARCGKVRDAYFAFDKIF 636

Query: 307  QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             +D +SW ++ISG++Q G   +AL LF +M   G   +  T    + A   +  +  GK+
Sbjct: 637  SKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ 696

Query: 367  LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            +H   I+         ++  +I +YAKCG+ID A   F+++P+  K    +N++++G +Q
Sbjct: 697  IHAMIIK-TGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPE--KNEISWNAMLTGYSQ 753

Query: 427  HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
            HG G  ++++F +M+ +G+ P+ VTFV VL ACSH GLV+EG ++F+SM   +G+ P+ E
Sbjct: 754  HGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPE 813

Query: 486  HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            HY C+VDLL R G L  A   ++ MP   ++++ R LL+AC +H+N  IGE A   LL+L
Sbjct: 814  HYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLEL 873

Query: 546  EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            EP   A YVLLSNM A T +W    + R++M D G++K PG S+IE N ++H F A  + 
Sbjct: 874  EPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQK 933

Query: 606  HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            HP   +I   L+D+       GY+P T  ++ D +  +K      HSEKLA+AFGL++  
Sbjct: 934  HPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLS 993

Query: 666  SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            S   I + KNLR+CGDCH   K +S+I  R I+VRD+ RFH FK G CSC D+W
Sbjct: 994  SSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/502 (27%), Positives = 256/502 (50%), Gaps = 45/502 (8%)

Query: 26  QIHGQ-IVHSGLNHHISSSQLISFFALSGCKNGLFRS-RILFSQIDNPNIFIWNTLMRGY 83
           +IH + I H   N     + LI  +     KNG   S + +F  +   +   W  ++ G 
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYF----KNGFLNSAKKVFDGLQKRDSVSWVAMLSGL 246

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           S+S   +EA++L+  M + G V P  + F  VL++C ++  +K G Q+H  ++K G   +
Sbjct: 247 SQSGCEEEAVLLFCQMHTSG-VYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLE 305

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
            ++ NAL+  YS  G    A +VF   L RD VSYN+LI+G +Q      AL LF+KM  
Sbjct: 306 TYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCL 365

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
            C++PD  T  ++ SAC+ +    +GKQFH+   K    + S+++L+ A++++Y KC   
Sbjct: 366 DCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIK--AGMSSDIILEGALLDLYVKC--- 420

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                                          I+ A + F   +  ++V W  M+  Y  +
Sbjct: 421 -----------------------------SDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
              +++ ++F +M+  GI P++ T  ++LR C  L A+D G+++H Q ++   F  N+++
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLK-TGFQFNVYV 510

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
           ++ +IDMYAK G +D AL +F ++ +  K V  + ++I+G AQH     ++ +F+EM+  
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLKE--KDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ 568

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G+  D + F + + AC+    + +G+Q        G    +     +V L AR G++ +A
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628

Query: 504 YGLIQSMPYDANSVIWRALLAA 525
           Y     + +  +++ W +L++ 
Sbjct: 629 YFAFDKI-FSKDNISWNSLISG 649



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 209/459 (45%), Gaps = 46/459 (10%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
             L   YS  +     +     M  +G V  N+ T+ ++L+ C     F  G ++H  I+
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERG-VRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G   ++ +   L+  Y  FG ++ A  VF+    R L  +N +++ +   K     L 
Sbjct: 96  KMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLG 155

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG----SNMLLKTA 252
           LFR+M    ++PD  T+  +   C   + P     FH V   +   +     +++ +   
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGGGDVP-----FHCVEKIHARTITHGYENSLFVCNP 210

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +I++Y K G +N A++VF  +   + + +W +M+SG ++ G  E                
Sbjct: 211 LIDLYFKNGFLNSAKKVFDGL-QKRDSVSWVAMLSGLSQSGCEE---------------- 253

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                          +A+ LF +M + G++P      +VL AC  +     G++LH   +
Sbjct: 254 ---------------EAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVL 298

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +   F    ++  A++ +Y++ G+   A  VF  + +    VS +NS+ISGL+Q G  + 
Sbjct: 299 KQ-GFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQR-DEVS-YNSLISGLSQQGYSDK 355

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           ++ +F++M L  LKPD VT  ++L ACS  G +  GKQF    +  G+   +   G ++D
Sbjct: 356 ALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLD 415

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           L  +   +  A+    S   + N V+W  +L A  L  N
Sbjct: 416 LYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVAYGLLDN 453



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           Q+ L   TA+   YS   G +  +     ME  G+  +  T + +L  C+  G    G +
Sbjct: 30  QKFLEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWK 89

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH + I  + F   + L   ++D+Y   G +D A++VF ++P  ++ +S +N ++     
Sbjct: 90  LHGK-ILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMP--VRPLSCWNKVLHRFVA 146

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL-VEEGKQFFESMLNYGIKPQME 485
             +    + +FR M    +KPD  T+  VL  C  G +     ++     + +G +  + 
Sbjct: 147 GKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLF 206

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               ++DL  ++G L+ A  +   +    +SV W A+L+ 
Sbjct: 207 VCNPLIDLYFKNGFLNSAKKVFDGLQ-KRDSVSWVAMLSG 245


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/772 (33%), Positives = 415/772 (53%), Gaps = 87/772 (11%)

Query: 1   MKRL--VLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCK 55
           M+RL  + +H +   +L++C    SL+    +H  +  +GL  ++      S  A+ G  
Sbjct: 118 MQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICN--SIVAMYGRC 175

Query: 56  NGLFRSRILFSQI---DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS--PNNF 110
             L  +  +F ++      +I  WN+++  Y +    + AL +   M +   +   P+  
Sbjct: 176 GALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAI 235

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           T   +L +CA + + + G Q+H   ++ GL  D+F+ NAL+  Y+    +N A+KVFEG 
Sbjct: 236 TLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGI 295

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI------------------------ 206
             +D+VS+N ++ GY+Q+     AL LF+ MQ+  I                        
Sbjct: 296 KKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEAL 355

Query: 207 -----------QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN-----MLLK 250
                      +P+  T  ++ S C  +     GKQ HA V KN+  +  N     +L+ 
Sbjct: 356 DVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVL 415

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             +I+MYAKC    +A  +F ++                  EGK             +++
Sbjct: 416 NGLIDMYAKCKSYRVARSIFDSI------------------EGK------------DKNV 445

Query: 311 VSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           V+WT MI GY+Q G  + AL+LF ++  +   + P+  T+   L AC  LG L  G++LH
Sbjct: 446 VTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLH 505

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              + N      +++   +IDMY+K G ID A +VF  +   L+ V  + S+++G   HG
Sbjct: 506 AYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNM--KLRNVVSWTSLMTGYGMHG 563

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
            GE ++ +F +M+ +G   DG+TF+ VL ACSH G+V++G  +F  M+  +GI P  EHY
Sbjct: 564 RGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHY 623

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            CMVDLL R GRL+EA  LI++M  +  +V+W ALL+A R+H N ++GE A  KL +L  
Sbjct: 624 ACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGA 683

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           ++   Y LLSN+ A   RW++  ++R LM  +GI+K PG S+I+   +   F    +SHP
Sbjct: 684 ENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHP 743

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           ++++I  +L D+  ++K  GYVP T   + DVD+EEK  ++  HSEKLA+A+G++ +   
Sbjct: 744 ESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPG 803

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + IRI KNLRICGDCH A   +S I   EI++RD+ RFH FKKG+CSC  +W
Sbjct: 804 QPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 283/541 (52%), Gaps = 33/541 (6%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++LL  CK+L  A   H QI   G       +++ S+   +  + G     +   Q   
Sbjct: 33  LISLLRQCKTLINAKLAHQQIFVHGF------TEMFSYAVGAYIECGASAEAVSLLQRLI 86

Query: 71  PN---IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           P+   +F WN L+R   +     + L  Y  M   G + P+++TFPFVL +C  + S + 
Sbjct: 87  PSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWL-PDHYTFPFVLKACGEIPSLRH 145

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLING 184
           G  +H  +   GL  ++FI N+++  Y   G +++AH++F+  L R   D+VS+N+++  
Sbjct: 146 GASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAA 205

Query: 185 YAQVKEPCPALWLFRKMQDSC---IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           Y Q  +   AL +  +M +     ++PDA T V +  AC  +   + GKQ H    +N G
Sbjct: 206 YVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRN-G 264

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            V  ++ +  A+++MYAKC  MN A +VF  +   K   +W++M++GY++ G  + A  L
Sbjct: 265 LV-DDVFVGNALVSMYAKCSKMNEANKVFEGI-KKKDVVSWNAMVTGYSQIGSFDSALSL 322

Query: 302 FDQMDQRDL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           F  M + D+    ++W+A+I+GY+Q G   +AL++F +M+  G+ P+ VT+ ++L  C  
Sbjct: 323 FKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCAS 382

Query: 358 LGALDFGKRLHQQYIENVVF------GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           +GAL +GK+ H   I+N++         ++ +   +IDMYAKC S   A S+F  I    
Sbjct: 383 VGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD 442

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM--ELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
           K V  +  +I G AQHG    ++ +F ++  +   LKP+  T    L AC+  G +  G+
Sbjct: 443 KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502

Query: 470 QFFESMLNYGIKPQMEHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           Q     L    + ++ + G C++D+ ++ G +D A  +  +M    N V W +L+    +
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL-RNVVSWTSLMTGYGM 561

Query: 529 H 529
           H
Sbjct: 562 H 562


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/789 (33%), Positives = 408/789 (51%), Gaps = 85/789 (10%)

Query: 6   LEHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRS 61
           ++  + + L + C  L+ A    Q+   I+  G   +I   + LI  +++ G    +  +
Sbjct: 55  IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICG---NVTEA 111

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R +F  ++N  +  WN L+ GY++    +EA  L+  M+ +G+  P+  TF  VL++C+ 
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGL-EPSIITFLSVLDACSS 170

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            +    G ++H  ++  G   D  I  AL+  Y   G +++A +VF+G   RD+ ++N +
Sbjct: 171 PAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVM 230

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           + GYA+  +   A  LF +MQ   ++P+  +F+++   C        GK  HA    N G
Sbjct: 231 VGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCM-NAG 289

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            V  ++ + T++I MY  CG +  A RVF  M + +   +W+ MI GY   G IE A  L
Sbjct: 290 LV-DDIRVATSLIRMYTTCGSIEGARRVFDNMKV-RDVVSWTVMIEGYAENGNIEDAFGL 347

Query: 302 FDQMDQR---------------------------------------DLVSWTAMISGYSQ 322
           F  M +                                        DL+  TA++  Y++
Sbjct: 348 FATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAK 407

Query: 323 VGGF-------------------------------SQALELFGKMESLGIHPDEVTMVAV 351
            G                                 ++A E F  M+   I PD VT + +
Sbjct: 408 CGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINL 467

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  LGALD G  ++ Q I+  +   ++ L  A+I M AK GS++ A  +F  + +  
Sbjct: 468 LNACGHLGALDVGMEIYTQAIKADLVS-HVPLGNALIIMNAKHGSVERARYIFDTMVR-- 524

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           + V  +N++I G + HG    ++ +F  M     +P+ VTFV VL ACS  G V+EG++F
Sbjct: 525 RDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRF 584

Query: 472 FESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  +L   GI P ++ YGCMVDLL R G LDEA  LI+SMP    S IW +LL ACR+H 
Sbjct: 585 FTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHG 644

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N  + E A ++ L ++P  GA YV LS+M A    WE   +VRK+M+  GI+K  G ++I
Sbjct: 645 NLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWI 704

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E  G +H F+   +SHP   EI   L  +   +K  GY+P T  V+ DV E++KE  +SY
Sbjct: 705 EVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISY 764

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+A+G+++  S   IRI KNLR+C DCH A K +S++  REI+ RDA RFH FK 
Sbjct: 765 HSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKD 824

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 825 GVCSCGDYW 833



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR--NIFLTTA 386
           A ++  ++   G H D  T V + + C  L     GK++    I+    GR  NI+    
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQG---GRQLNIYELNT 97

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +I +Y+ CG++  A  +F  +    KTV  +N++I+G AQ G  + + A+FR+M   GL+
Sbjct: 98  LIKLYSICGNVTEARQIFDSVEN--KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           P  +TF++VL ACS    +  GK+    ++  G          +V +  + G +D+A
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDA 212


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 401/721 (55%), Gaps = 45/721 (6%)

Query: 4   LVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           L+ + ++L+ +L  C     ++  ++IHG  V  GL+  +  ++ L+  ++  G    L 
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY---LT 186

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +++LF + +  N   WNT++ G        EA  L+  M  +  +  N  T   +L +C
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
             +S  +S  ++H + I+ G ++D  + N  +  Y+  G +  A +VF     + + S+N
Sbjct: 247 LEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            LI G AQ  +P  AL L+ +M  S + PD FT  ++  A   L   R GK+ H  V ++
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              + S   +  +++++Y  CG  + A  +F  M   KS+ +W++MISGY++ G  E   
Sbjct: 367 GLEIDS--FIGISLLSLYIHCGESSSARLLFDGM-EEKSSVSWNAMISGYSQNGLPE--- 420

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                                        AL LF K+ S G  P ++ +V+VL AC    
Sbjct: 421 ----------------------------DALILFRKLVSDGFQPSDIAVVSVLGACSQQS 452

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL  GK  H  Y    +   ++F+  + IDMYAK G I  + SVF  + KN K ++ +N+
Sbjct: 453 ALRLGKETH-CYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGL-KN-KDLASWNA 509

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY- 478
           II+    HG GE SI +F  M  +G  PDG TF+ +L  CSH GLVEEG ++F  M N+ 
Sbjct: 510 IIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFH 569

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI+P++EHY C++D+L R GRLD+A  L+  MP   +S +W +LL+ CR     +IG+I 
Sbjct: 570 GIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIV 629

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +KLL+LEP +  +YV LSN+ A + RW++ R+VR+++ D G+QK  G S+IE  G +H 
Sbjct: 630 AEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHS 689

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F+A     PQ+KE+ +  + +  K+   GY PNT  V+ DVDEE+K   +  HSEKLA+ 
Sbjct: 690 FVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAIC 749

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGL+N+    T+RI KNLRIC DCH A K +SE+  REI++RD  RFH FK G CSC D+
Sbjct: 750 FGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDY 809

Query: 719 W 719
           W
Sbjct: 810 W 810



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 214/443 (48%), Gaps = 39/443 (8%)

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R++   +A+ ++  +++    + +NFTFP V+ +C        G  IH  +IK GL  D+
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ--VKEPCPALWLFRKMQ 202
           F+ NALI  Y  FG+++ A KVF     R+LVS+N++I+G+++    + C  + +     
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +  + PD  T V +   C    D ++G + H +  K LG +  ++ +  ++++MY+KCG 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK-LG-LSEDVRVNNSLVDMYSKCGY 184

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A+ +F      K+  +W++MI G   +G I  A  LF +M  ++             
Sbjct: 185 LTEAQMLFDK-NNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE------------- 230

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                             I  +EVT++ +L AC+ +  L   K LH   I +  F  +  
Sbjct: 231 -----------------DIEVNEVTVLNILPACLEISQLRSLKELHGYSIRH-GFQYDEL 272

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +    +  YAKCG +  A  VFY +    KTV+ +N++I G AQ+G    ++ ++ +M  
Sbjct: 273 VANGFVAAYAKCGMLICAERVFYSMET--KTVNSWNALIGGCAQNGDPRKALNLYIQMTY 330

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            GL PD  T  ++L A +H   +  GK+    +L +G++        ++ L    G    
Sbjct: 331 SGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSS 390

Query: 503 AYGLIQSMPYDANSVIWRALLAA 525
           A  L   M  + +SV W A+++ 
Sbjct: 391 ARLLFDGME-EKSSVSWNAMISG 412


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 393/713 (55%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLL+   S  +L +  Q+H  ++ +G++   I    L+  +    C + +  +  +F  
Sbjct: 318 ASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYV--NCSD-IKTAHEMFLT 374

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
               N+ +WN ++  + + D+  E+  ++  M  KG++ PN FT+P +L +C  + +   
Sbjct: 375 AQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI-PNQFTYPSILRTCTSVGALDL 433

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH  +IK G +F++++ + LI  Y+  G ++ AH +       D+VS+  LI+GYAQ
Sbjct: 434 GEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQ 493

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL  F++M +  IQ D   F +  SAC  +     G+Q HA  Y          
Sbjct: 494 HNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY---------- 543

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                                     G S+  +  ++++S Y R G+I+ A   F+++D 
Sbjct: 544 ------------------------VSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDA 579

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D +SW  +ISG++Q G    AL++F +M    +     T  + + A   +  +  GK++
Sbjct: 580 KDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQI 639

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   I+   F  +I ++ A+I  YAKCGSI+ A   F ++P+  K    +N++I+G +QH
Sbjct: 640 HAMIIKRG-FDSDIEVSNALITFYAKCGSIEDARREFCEMPE--KNDVSWNAMITGYSQH 696

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           G G  ++ +F +M+ +G  P+ VTFV VL ACSH GLV +G  +FESM   +G+ P+  H
Sbjct: 697 GYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAH 756

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+VDL++R G L  A   I+ MP + ++ IWR LL+AC +H+N ++GE A Q LL+LE
Sbjct: 757 YACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELE 816

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+  A YVLLSNM A + +W+   Q R++M + G++K PG S+IE   ++H F    + H
Sbjct: 817 PEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLH 876

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P   +I   L ++  K    GY  +   ++ DV++E+K+  V  HSEKLA+ FGL++   
Sbjct: 877 PLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSD 936

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              I + KNLR+C DCH   K +S+I  R I+VRDA RFH F+ G CSC D+W
Sbjct: 937 TVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 262/523 (50%), Gaps = 51/523 (9%)

Query: 10  SLLALLESCKS----LKQALQIHGQIV-HSGLNHHISSSQLISFFALSGCKNGLFRS-RI 63
           S  ++L +C      ++ A QIH +I+ H  L   I S+ LI  +A    KNGL  S R 
Sbjct: 113 SFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYA----KNGLIISARK 168

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   +   W  ++ G+S++   +EA+ L+  M + GI  P  + F  VL+ C ++ 
Sbjct: 169 VFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIF-PTPYVFSSVLSGCTKIK 227

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            F  G Q+H  + K+G   + ++ NAL+  YS      +A KVF    ++D VS+N+LI+
Sbjct: 228 LFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLIS 287

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G AQ      AL LF KM+   ++PD  T  ++ SAC        G+Q H+ V K    +
Sbjct: 288 GLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIK--AGI 345

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S+M+++ A++++Y  C                                  I+ A ++F 
Sbjct: 346 SSDMIVEGALLDLYVNCS--------------------------------DIKTAHEMFL 373

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                ++V W  M+  + ++   S++  +F +M+  G+ P++ T  ++LR C  +GALD 
Sbjct: 374 TAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDL 433

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+++H Q I+   F  N+++ + +IDMYAK G +DTA  +   + ++   V  + ++ISG
Sbjct: 434 GEQIHTQVIKTG-FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTED--DVVSWTALISG 490

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            AQH L   ++  F+EM   G++ D + F + + AC+    + +G+Q        G    
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAA 525
           +     +V L AR GR+ EAY  ++    DA +S+ W  L++ 
Sbjct: 551 LSIGNALVSLYARCGRIKEAY--LEFEKIDAKDSISWNGLISG 591



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 226/492 (45%), Gaps = 54/492 (10%)

Query: 1   MKRLVLEHSSLLALLESCKS---LKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKN 56
           +K L+    +  ++L +C S   L    QIH Q++ +G   ++   S LI  +A  G   
Sbjct: 408 IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHG--- 464

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            L  + ++   +   ++  W  L+ GY++ +   EAL  +  ML++GI S +N  F   +
Sbjct: 465 KLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQS-DNIGFSSAI 523

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           ++CA + +   G QIH      G   DL I NAL+  Y+  G I  A+  FE   A+D +
Sbjct: 524 SACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSI 583

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N LI+G+AQ      AL +F +M  + ++   FTF +  SA   + + + GKQ HA++
Sbjct: 584 SWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMI 643

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K      S++ +  A+I  YAKCG +  A R F  M   K+  +W++MI+GY++ G   
Sbjct: 644 IKR--GFDSDIEVSNALITFYAKCGSIEDARREFCEMP-EKNDVSWNAMITGYSQHGYGN 700

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A  LF++M Q                               +G  P+ VT V VL AC 
Sbjct: 701 EAVNLFEKMKQ-------------------------------VGEMPNHVTFVGVLSACS 729

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTA----VIDMYAKCGSIDTALSVFYKIPKNLK 412
            +G +  G      Y E++     +    A    V+D+ ++ G +  A     ++P    
Sbjct: 730 HVGLVTKG----LGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE-P 784

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQF 471
             +++ +++S    H      +  F    L+ L+P D  T+V +    +  G  +   Q 
Sbjct: 785 DATIWRTLLSACTVH--KNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQT 842

Query: 472 FESMLNYGIKPQ 483
            + M N G+K +
Sbjct: 843 RQMMRNRGVKKE 854



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 206/431 (47%), Gaps = 46/431 (10%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           M  +GI + N  T+ ++L+ C    S     ++H  I+K G   +  + N L+  Y   G
Sbjct: 1   MEHRGICA-NCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALG 59

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            ++   KVFE    R + S++ +I+G+ + K     L LF  M +  + P   +F ++  
Sbjct: 60  DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR 119

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
           AC+     RIG ++   ++  + C G   + ++   +I +YAK GL+  A +VF  +  +
Sbjct: 120 ACS---GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNL-CT 175

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K + +W +MISG+++ G  E                               +A+ LF +M
Sbjct: 176 KDSVSWVAMISGFSQNGYEE-------------------------------EAIHLFCEM 204

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKC 394
            + GI P      +VL  C  +   D G++LH    +   +G ++  ++  A++ +Y++ 
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFK---YGSSLETYVCNALVTLYSRM 261

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
            +  +A  VF K+    K    FNS+ISGLAQ G  + ++ +F +M+   LKPD VT  +
Sbjct: 262 PNFVSAEKVFSKMQS--KDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVAS 319

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           +L AC+  G + +G+Q    ++  GI   M   G ++DL      +  A+ +  +   + 
Sbjct: 320 LLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTE- 378

Query: 515 NSVIWRALLAA 525
           N V+W  +L A
Sbjct: 379 NVVLWNVMLVA 389


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/707 (35%), Positives = 395/707 (55%), Gaps = 46/707 (6%)

Query: 17  SCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS-RILFSQIDNPNIF 74
           S +S+    Q+HG I+ SG     S  + L++F+     KN    S R +F ++   ++ 
Sbjct: 207 SLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYL----KNHRVDSARKVFDEMTERDVI 262

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            WN+++ GY  +   ++ L ++  ML  GI   +  T   V   CA       G  +HC 
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGI-EIDLATIVSVFAGCADSRLISLGRAVHCF 321

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            +K     +    N L+  YS  G +++A  VF     R +VSY ++I GYA+      A
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEA 381

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           + LF +M++  I PD +T  A+ + C        GK+ H  + +N   +G ++ +  A++
Sbjct: 382 VKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEND--MGFDIFVSNALM 439

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
           +MYAKCG M  AE VFS                                +M  +D++SW 
Sbjct: 440 DMYAKCGSMREAELVFS--------------------------------EMRVKDIISWN 467

Query: 315 AMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            +I GYS+    ++AL LF  +       PDE T+  VL AC  L A D G+ +H   + 
Sbjct: 468 TVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N  F  +  +  +++DMYAKCG++  A  +F  I    K +  +  +I+G   HG G+ +
Sbjct: 528 NGYFS-DRHVANSLVDMYAKCGALLLARLLFDDITS--KDLVSWTVMIAGYGMHGFGKEA 584

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVD 492
           IA+F +M   G++PD ++FV++L ACSH GLV+EG +FF  M +   I+P +EHY C+VD
Sbjct: 585 IALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVD 644

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           +LAR G L +AY  I++MP   ++ IW ALL  CR+H + K+ E   +K+ +LEP++  +
Sbjct: 645 MLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGY 704

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVL++N+ AE  +WEE +++RK +   G++K PG S+IE  G ++ F+A   S+P+T++I
Sbjct: 705 YVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKI 764

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
           E  L+ +  ++   GY P T   + D +E EKE  +  HSEKLA+A G+I+S   + IR+
Sbjct: 765 EAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRV 824

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           TKNLR+CGDCH   K +S++ RREI++RD+ RFH FK G+CSC  FW
Sbjct: 825 TKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 143/283 (50%), Gaps = 8/283 (2%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           ++ A+L  C   + L +  ++H  I  + +   I  S+ L+  +A  G    +  + ++F
Sbjct: 399 TVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCG---SMREAELVF 455

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           S++   +I  WNT++ GYS++    EAL L+  +L +   SP+  T   VL +CA LS+F
Sbjct: 456 SEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAF 515

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH +I++ G   D  + N+L+  Y+  G +  A  +F+   ++DLVS+  +I GY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGY 575

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   A+ LF +M+ + I+PD  +FV++  AC+       G +F  ++      +  
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK-IEP 634

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            +     +++M A+ G ++ A R    M +      W +++ G
Sbjct: 635 TVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCG 677



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           YT  G ++ A ++FDQ+     + W  +++  ++ G FS ++ LF KM S G+  D  T 
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             V ++   L +++ G++LH  YI    FG    +  +++  Y K   +D+A  VF ++ 
Sbjct: 199 SCVSKSFSSLRSVNGGEQLH-GYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMT 257

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  + V  +NSII+G   +GL E  ++VF +M   G++ D  T V+V   C+   L+  G
Sbjct: 258 E--RDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 469 KQFFESMLNYGIKP--QMEHYGC--MVDLLARDGRLDEAYGLIQSM 510
           +    ++  +G+K     E   C  ++D+ ++ G LD A  + + M
Sbjct: 316 R----AVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREM 357


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/732 (34%), Positives = 411/732 (56%), Gaps = 70/732 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           +SL+A     ++L++  ++H  ++ +G    I   + L+  +A  G    L  ++ +F  
Sbjct: 34  TSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCG---SLDDAKRVFEG 90

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           ++  ++F W++++  Y+R+   + A+VLY  M+++G V PN  TF   L  CA ++    
Sbjct: 91  MEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEG-VEPNVVTFACALGGCASVAGLAD 149

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH  I+   +  D  ++++L++ Y     +  A KVFEG  AR++ SY  +I+ Y Q
Sbjct: 150 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 209

Query: 188 VKEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG-- 244
             E   AL LF +M     I+P+A+TF  +  A   L +   G++ H    ++L   G  
Sbjct: 210 AGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVH----RHLASRGFD 265

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +N++++ A++ MY KCG                                 +E AR++FD 
Sbjct: 266 TNVVVQNALVTMYGKCG-------------------------------SPVE-ARKVFDS 293

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  R+++SWT+MI+ Y+Q G   +AL LF +M+   + P  V+  + L AC  LGALD G
Sbjct: 294 MTARNVISWTSMIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGALDEG 350

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF--NSIIS 422
           + +H + +E  +      + T+++ MYA+CGS+D A  VF +    +KT   F  N++I+
Sbjct: 351 REIHHRVVEANLASPQ--METSLLSMYARCGSLDDARRVFNR----MKTRDAFSCNAMIA 404

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
              QHG  + ++ ++R+ME  G+  DG+TFV+VL ACSH  LV + + F +S+ +++G+ 
Sbjct: 405 AFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVV 464

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P +EHY CMVD+L R GRL +A  L+++MPY A++V W  LL+ C+ H +   GE A +K
Sbjct: 465 PLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARK 524

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           + +L P     YV LSNM A   R+++AR+VRK M++ G+ +P   SYIE +  LH F +
Sbjct: 525 VFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTS 584

Query: 602 SKKSHPQT-------KEIELMLKDMTMKLKSAGYVPNTVQVVFD----VDEEEKETVVSY 650
             +   Q        + +  +L ++   +K AGYVP+T +V  +      EEEK+  + +
Sbjct: 585 GGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQRSLCF 644

Query: 651 HSEKLALAFGLINSRSKE---TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           HSE+LA+A+GLI ++  +    +R+  + R+C  CH A KLLS+I  + I VRD  RFH 
Sbjct: 645 HSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHH 704

Query: 708 FKKGNCSCMDFW 719
           F+KG CSC D W
Sbjct: 705 FEKGACSCGDHW 716



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 186/397 (46%), Gaps = 45/397 (11%)

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG--SNML 248
           P  AL L+ +M++  I  D F   ++ +ACT+L     G++ H    ++L   G  +++ 
Sbjct: 11  PLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLH----EHLIITGFRTDIP 66

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L+TA++ MYAKCG ++ A+RVF  M + K   AWSS+I+ Y R G+ E            
Sbjct: 67  LETALLQMYAKCGSLDDAKRVFEGMEI-KDLFAWSSIIAAYARAGRGE------------ 113

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                               A+ L+ +M + G+ P+ VT    L  C  +  L  G+ +H
Sbjct: 114 -------------------MAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 154

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           Q+ + + V   ++ L  ++++MY KC  +  A  VF  +    + V  + ++IS   Q G
Sbjct: 155 QRILASKVPQDDV-LQDSLLNMYLKCDEMVEARKVFEGM--KARNVRSYTAMISAYVQAG 211

Query: 429 LGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
               ++ +F  M ++  ++P+  TF T+L A    G +E+G++    + + G    +   
Sbjct: 212 EHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 271

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
             +V +  + G   EA  +  SM    N + W +++AA   H N +   +   K +D+EP
Sbjct: 272 NALVTMYGKCGSPVEARKVFDSMTA-RNVISWTSMIAAYAQHGNPQEA-LNLFKRMDVEP 329

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
             G  +    N  A     +E R++   + ++ +  P
Sbjct: 330 S-GVSFSSALNACALLGALDEGREIHHRVVEANLASP 365



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 4/168 (2%)

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           MI+   + G   QALEL+G+ME  GI  D+  + +++ AC  L AL+ G+RLH+  I   
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLI-IT 59

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            F  +I L TA++ MYAKCGS+D A  VF  +   +K +  ++SII+  A+ G GE ++ 
Sbjct: 60  GFRTDIPLETALLQMYAKCGSLDDAKRVFEGM--EIKDLFAWSSIIAAYARAGRGEMAVV 117

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           ++R M   G++P+ VTF   L  C+    + +G+   + +L   + PQ
Sbjct: 118 LYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKV-PQ 164



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +I+   + G    ++ ++ EME  G+  D     +++ AC+    +EEG++  E ++  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            +  +     ++ + A+ G LD+A  + + M    +   W +++AA   +  A  GE+A
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK-DLFAWSSIIAA---YARAGRGEMA 115


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/591 (39%), Positives = 354/591 (59%), Gaps = 38/591 (6%)

Query: 130  QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            Q+H      G+  +L + N L+ FYS +  +++A+ +F+G   RD VS++ ++ G+A+V 
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 190  EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
            +       FR++     +PD +T   +  AC +L + ++G+  H +VYK  G +  +  +
Sbjct: 816  DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK-FG-LDLDHFV 873

Query: 250  KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
              A+++MY KC                              RE  IE AR LFD+M +RD
Sbjct: 874  CAALVDMYGKC------------------------------RE--IEDARFLFDKMXERD 901

Query: 310  LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            LV+WT MI GY++ G  +++L LF KM   G+ PD+V MV V+ AC  LGA+   + +  
Sbjct: 902  LVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI-D 960

Query: 370  QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             YI+   F  ++ L TA+IDM+AKCG +++A  +F ++ +  K V  ++++I+    HG 
Sbjct: 961  DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE--KNVISWSAMIAAYGYHGQ 1018

Query: 430  GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYG 488
            G  ++ +F  M   G+ P+ +T V++L ACSH GLVEEG +FF  M  +Y ++  ++HY 
Sbjct: 1019 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYT 1078

Query: 489  CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
            C+VDLL R GRLDEA  LI SM  + +  +W A L ACR H++  + E A   LL+L+P 
Sbjct: 1079 CVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQ 1138

Query: 549  HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
            +  HY+LLSN+ A   RWE+  ++R LM    ++K PGW++IE +   H+F     +HP+
Sbjct: 1139 NPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPR 1198

Query: 609  TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
            +KEI  MLK +  KL+  GYVP+T  V+ DVDEE K  ++  HSEKLA+AFGLI +    
Sbjct: 1199 SKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHT 1258

Query: 669  TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IRI KNLR+CGDCH   KL+S I  R I+VRDA RFH FK+G CSC D+W
Sbjct: 1259 PIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 331/563 (58%), Gaps = 41/563 (7%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L +C  L+  +   Q+H      G+  ++ + N LI+FYS +  +++A+ +F+G   RD 
Sbjct: 69  LVNCRNLTQVR---QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           VS++ ++ G+A+V +       FR++     +PD +T   +  AC +L + ++G+  H +
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           VYK  G +  +  +  A+++MY KC                              RE  I
Sbjct: 186 VYK-FG-LDLDHFVCAALVDMYVKC------------------------------RE--I 211

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           E AR LFD+M +RDLV+WT MI GY++ G  +++L LF KM   G+ PD+V MV V+ AC
Sbjct: 212 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 271

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LGA+    R+   YI+   F  ++ L TA+IDMYAKCG +++A  +F ++ +  K V 
Sbjct: 272 AKLGAM-HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE--KNVI 328

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            ++++I+    HG G  ++ +F  M   G+ PD +T  ++L ACSH GLVEEG +FF SM
Sbjct: 329 SWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSM 388

Query: 476 L-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
             +Y ++  ++HY C+VDLL R GRLDEA  LI+SM  + +  +W A L ACR H++  +
Sbjct: 389 WEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVL 448

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            E A   LL+L+  +  HYVLLSN+ A   RWE+  ++R LM    ++K PGW++IE + 
Sbjct: 449 AEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDN 508

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
             H+F     +HP++KEI  MLK ++ KL+  GYVP+T  V+ DVDEE K  ++  HSEK
Sbjct: 509 KSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEK 568

Query: 655 LALAFGLINSRSKETIRITKNLR 677
           LA+AFGLI +     IRI KNLR
Sbjct: 569 LAIAFGLIATPEHTPIRIIKNLR 591



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 188/393 (47%), Gaps = 39/393 (9%)

Query: 12  LALLESCKSLKQALQIHGQI-VHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++ L +C++L Q  Q+H Q  VH  L + + +++LI F++       L  +  LF  +  
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYY---RALDDAYGLFDGMCV 122

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            +   W+ ++ G+++          +  ++  G   P+N+T PFV+ +C  L + + G  
Sbjct: 123 RDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRL 181

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH  + KFGL+ D F+  AL+  Y     I +A  +F+    RDLV++  +I GYA+  +
Sbjct: 182 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 241

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              +L LF KM++  + PD    V +  AC +L      +     + +       +++L 
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK--FQLDVILG 299

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           TA+I+MYAKCG +  A  +F  M   K+  +WS+MI+ Y                     
Sbjct: 300 TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAY--------------------- 337

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                   GY   G   +AL+LF  M S G+ PD++T+ ++L AC   G ++ G R    
Sbjct: 338 --------GYHGQG--RKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSS 387

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
             E+     ++   T V+D+  + G +D AL +
Sbjct: 388 MWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKL 420



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 196/429 (45%), Gaps = 42/429 (9%)

Query: 20   SLKQALQIHGQI-VHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
            +L Q  Q+H Q  VH  L + I +++L+ F++       L  +  LF  +   +   W+ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYY---RALDDAYGLFDGMCVRDSVSWSV 806

Query: 79   LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
            ++ G+++          +  ++  G   P+N+T PFV+ +C  L + + G  IH  + KF
Sbjct: 807  MVGGFAKVGDYMNCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 865

Query: 139  GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
            GL+ D F+  AL+  Y     I +A  +F+    RDLV++  +I GYA+      +L LF
Sbjct: 866  GLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLF 925

Query: 199  RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             KM++  + PD    V +  AC +L      +     + +       +++L TA+I+M+A
Sbjct: 926  DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK--FQLDVILGTAMIDMHA 983

Query: 259  KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
            KCG +  A  +F  M   K+  +WS+MI+ Y                             
Sbjct: 984  KCGCVESAREIFDRME-EKNVISWSAMIAAY----------------------------- 1013

Query: 319  GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
            GY   G   +AL+LF  M   GI P+++T+V++L AC   G ++ G R      E+    
Sbjct: 1014 GYHGQG--RKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVR 1071

Query: 379  RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             ++   T V+D+  + G +D AL +   +    K   L+ + +     H   +  +A   
Sbjct: 1072 XDVKHYTCVVDLLGRAGRLDEALKLIXSMTXE-KDEGLWGAFLGACRTH--KDVXLAEKA 1128

Query: 439  EMELMGLKP 447
               L+ L+P
Sbjct: 1129 ATSLLELQP 1137


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/720 (35%), Positives = 402/720 (55%), Gaps = 66/720 (9%)

Query: 6   LEHSSLLALLESCKSLKQA---LQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS 61
           L++  L +LL++C          ++HG    +G    +   + L++ +   GC   L  +
Sbjct: 86  LDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGC---LVSA 142

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R++F Q+   ++  W T++  Y RS +  EAL L   M   G V  +      ++     
Sbjct: 143 RLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVG-VKLSGVALISLIAVFGN 201

Query: 122 LSSFKSGCQIHCHIIK-FGLE-FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           L   KSG  +H +I++  G E  ++ +  ALI  Y   G + +A ++F+    R +VS+ 
Sbjct: 202 LLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWT 261

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I G  +          F +M +  + P+  T +++ + C  +    +GK FHA + +N
Sbjct: 262 VMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRN 321

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
               G ++ L TA+I+MY KCG                                ++  AR
Sbjct: 322 --GFGMSLALVTALIDMYGKCG--------------------------------QVGYAR 347

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            LF+ + ++D+  W+ +IS Y+ V    Q   LF +M +  + P+ VTMV++L  C   G
Sbjct: 348 ALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAG 407

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           ALD GK  H  YI       ++ L TA+I+MYAKCG +  A S+F +  +  + + ++N+
Sbjct: 408 ALDLGKWTHA-YINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQ--RDIRMWNT 464

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +++G + HG G+ ++ +F EME  G++P+ +TFV++  ACSH GL               
Sbjct: 465 MMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL--------------- 509

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
               MEHYGC+VDLL R G LDEA+ +I++MP   N++IW ALLAAC+LH+N  +GE+A 
Sbjct: 510 ----MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAA 565

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +K+L+L+P +  + VL SN+ A   RW +   VR+ M  SG++K PG S+IE +G++H F
Sbjct: 566 RKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHF 625

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            +  K+  QT ++  M+ +M +KL+ +GY PNT  V+ ++DEEEKE+ +SYHSEKLA AF
Sbjct: 626 KSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAF 685

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GLI++     IRI KNLRIC DCH A KLLS+IY R I+VRD  RFH F +G CSCM +W
Sbjct: 686 GLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 198/481 (41%), Gaps = 90/481 (18%)

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           SGC  H H+    L+     +   +H + I    +N H  F  S      +YN LI+ Y 
Sbjct: 12  SGCSGHSHL---NLQ-----QTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYT 63

Query: 187 QVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
               P  +   +  M+ +     D F   ++  AC + +   +G++ H    KN     S
Sbjct: 64  NNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKN--GFAS 121

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ +  A++NMY KCG +  A  VF  M   +   +W++M+  Y R      A +L  +M
Sbjct: 122 DVFVCNALMNMYEKCGCLVSARLVFDQMP-ERDVVSWTTMLGCYVRSKAFGEALRLVREM 180

Query: 306 ----------------------------------------DQRDLVSW-TAMISGYSQVG 324
                                                   D++  VS  TA+I  Y + G
Sbjct: 181 QFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGG 240

Query: 325 GFSQALELFGKMESLGI-------------------------------HPDEVTMVAVLR 353
             + A  LF ++    +                                P+E+T+++++ 
Sbjct: 241 CLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLIT 300

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
            C  +G LD GK  H   + N  FG ++ L TA+IDMY KCG +  A ++F  + K  K 
Sbjct: 301 ECGFVGTLDLGKWFHAYLLRN-GFGMSLALVTALIDMYGKCGQVGYARALFNGVKK--KD 357

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V +++ +IS  A     +    +F EM    +KP+ VT V++L  C+  G ++ GK    
Sbjct: 358 VKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHA 417

Query: 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI-QSMPYDANSVIWRALLAACRLHRNA 532
            +  +G++  +     ++++ A+ G +  A  L  ++M  D    +W  ++A   +H   
Sbjct: 418 YINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIR--MWNTMMAGFSMHGCG 475

Query: 533 K 533
           K
Sbjct: 476 K 476


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/741 (34%), Positives = 414/741 (55%), Gaps = 72/741 (9%)

Query: 10  SLLALLESCKSLKQ------ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           +L+++  +C +L++        QIHG     G     S++ L++ +A  G    L  ++ 
Sbjct: 115 TLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLG---RLDDAKS 171

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           L    ++ ++  WN+++  +S+++   EAL+    M+ +G V P+  TF  VL +C+ L 
Sbjct: 172 LLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEG-VKPDGVTFASVLPACSHLD 230

Query: 124 SFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
             ++G +IH + ++   +  + F+ +AL+  Y   G + +   VF+  L R +  +N +I
Sbjct: 231 LLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMI 290

Query: 183 NGYAQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            GYAQ +    AL LF +M+ +  +  +A T  ++  A          +  H  V K   
Sbjct: 291 AGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKR-- 348

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            + +N  L+ A+I+MY++ G +  ++R+F +                             
Sbjct: 349 GLETNRYLQNALIDMYSRMGDIKTSKRIFDS----------------------------- 379

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL----------------GIHPDE 345
              M+ RD+VSW  +I+ Y   G  S AL L  +M+ +                   P+ 
Sbjct: 380 ---MEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNS 436

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           +T++ VL  C  L AL  GK +H   I N++    + + +A++DMYAKCG ++ A  VF 
Sbjct: 437 ITLMTVLPGCASLSALAKGKEIHAYAIRNLL-ASQVTVGSALVDMYAKCGCLNLARRVFD 495

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-----LKPDGVTFVTVLCACS 460
           ++P  ++ V  +N II     HG G+ S+ +F +M   G     +KP  VTF+ +  +CS
Sbjct: 496 QMP--IRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCS 553

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-I 518
           H G+V+EG   F  M N +GI+P  +HY C+VDL+ R G+++EAYGL+ +MP   + V  
Sbjct: 554 HSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGA 613

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W +LL ACR++ N +IGEIA + LL L+PD  +HYVLLSN+ +    W++A  +R+ M  
Sbjct: 614 WSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKA 673

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G++K PG S+IE+   +H+FLA   SHPQ++++   L+ ++ +LK  GYVP+T  V+ D
Sbjct: 674 MGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHD 733

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           +DEEEKET++  HSEKLA+AFG++N+    TIR+ KNLR+C DCH A K +S+I  REI+
Sbjct: 734 IDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREII 793

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           +RDA RFH FK G CSC D+W
Sbjct: 794 LRDARRFHHFKDGTCSCGDYW 814



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 202/433 (46%), Gaps = 45/433 (10%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF--DLFIRNALIHFYSI 156
           M+  G  SP+NF FP VL + A +     G QIH H+ KFG      + I N L++ Y  
Sbjct: 1   MIGSGF-SPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGK 59

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A+KVF+    RD VS+N++I+   + +E   A+  FR M     +P +FT V+M
Sbjct: 60  CGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSM 119

Query: 217 FSACTELNDPR---IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             AC+ L       +GKQ H                          C       R FS  
Sbjct: 120 ALACSNLRKRDGLWLGKQIHG-------------------------CCFRKGHWRTFSN- 153

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
                    +++++ Y + G+++ A+ L    + RDLV+W +MIS +SQ   F +AL   
Sbjct: 154 ---------NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFL 204

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M   G+ PD VT  +VL AC  L  L  GK +H   +       N F+ +A++DMY  
Sbjct: 205 RLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCN 264

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME-LMGLKPDGVTF 452
           CG +++   VF  +    + + L+N++I+G AQ    E ++ +F EME   GL  +  T 
Sbjct: 265 CGQVESGRLVFDSVLD--RKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTM 322

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            +++ A      +   +     ++  G++        ++D+ +R G +  +  +  SM  
Sbjct: 323 SSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSME- 381

Query: 513 DANSVIWRALLAA 525
           D + V W  ++ +
Sbjct: 382 DRDIVSWNTIITS 394



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 218/496 (43%), Gaps = 57/496 (11%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRS-RILF 65
           +S+L        L+   +IH   + +   + +    S L+  +    C  G   S R++F
Sbjct: 220 ASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMY----CNCGQVESGRLVF 275

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             + +  I +WN ++ GY++S+  ++AL+L+  M +   +  N  T   ++ +  R    
Sbjct: 276 DSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGI 335

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
                IH ++IK GLE + +++NALI  YS  G I  + ++F+    RD+VS+NT+I  Y
Sbjct: 336 SRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSY 395

Query: 186 AQVKEPCPALWLFRKMQ----------------DSCIQPDAFTFVAMFSACTELNDPRIG 229
                   AL L  +MQ                    +P++ T + +   C  L+    G
Sbjct: 396 VICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKG 455

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           K+ HA   +NL  + S + + +A+++MYAKCG +N+A RVF  M + ++   W+ +I  Y
Sbjct: 456 KEIHAYAIRNL--LASQVTVGSALVDMYAKCGCLNLARRVFDQMPI-RNVITWNVIIMAY 512

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
              GK + + +LF+     D+V+  A        GG               + P EVT +
Sbjct: 513 GMHGKGKESLELFE-----DMVAEGAK-------GG--------------EVKPTEVTFI 546

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           A+  +C   G +D G  L  +                ++D+  + G ++ A  +   +P 
Sbjct: 547 ALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPS 606

Query: 410 NLKTVSLFNSIISGL-AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEE 467
               V  ++S++      H +    IA      L+ L+PD  +   +L    S  GL ++
Sbjct: 607 GFDKVGAWSSLLGACRIYHNIEIGEIAA---ENLLQLQPDVASHYVLLSNIYSSAGLWDK 663

Query: 468 GKQFFESMLNYGIKPQ 483
                  M   G+K +
Sbjct: 664 AMNLRRRMKAMGVKKE 679


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/682 (36%), Positives = 401/682 (58%), Gaps = 43/682 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV---LNSCA 120
           LF  I  P+ + +NTL+   + S S  +A  L+  M  +  V+ N          L S A
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 121 R----LSSFKSGCQIHCHIIKF----------GL-----EFDLFIRNALIHFYSIFGYIN 161
           R    L+  K     +  +  +          GL     E+D    NAL+  Y  +G ++
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMS 210

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A ++F+    RD+VS+N +++GYA+  +   A    R++ D+    D FT+ A+ S   
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAVVSGYA 266

Query: 222 E---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +   L + R  + F A+  +N   V  N     A++  Y +  +M+ A+ +F+ M   ++
Sbjct: 267 QNGMLEEAR--RVFDAMPERN--AVSWN-----AMVAAYIQRRMMDEAKELFNMMP-CRN 316

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
            A+W++M++GY + G +E A+ +FD M Q+D VSW AM++ YSQ G   + L+LF +M  
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G   +      VL  C  + AL+ G +LH + I    +G   F+  A++ MY KCG+++
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNME 435

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A + F ++ +  + V  +N++I+G A+HG G+ ++ +F  M     KPD +T V VL A
Sbjct: 436 DARNAFEEMEE--RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLVE+G  +F SM  ++G+  + EHY CM+DLL R GRL EA+ L++ MP++ +S 
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL A R+HRN ++G  A +K+ +LEP++   YVLLSN+ A + +W +AR++R +M+
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           + G++K PG+S+IE    +H F A    HP+ ++I   L+D+ M++K AGYV  T  V+ 
Sbjct: 614 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 673

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           DV+EEEKE ++ YHSEKLA+A+G++N      IR+ KNLR+CGDCH AFK +S I  R I
Sbjct: 674 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 733

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           ++RD+ RFH F+ G+CSC D+W
Sbjct: 734 LLRDSNRFHHFRGGSCSCGDYW 755



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 184/420 (43%), Gaps = 62/420 (14%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           LE ++   N  I  +   G + +A ++F     R   +YN ++ GY+       A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 200 KMQDSCIQPDAFTFVAMFSA---CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
            +     +PD +++  +  A    + L D R    F  +  ++   V  N++     I+ 
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADAR--GLFDEMPVRD--SVTYNVM-----ISS 140

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           +A  GL+++A   F  +   K   +W+ M++ Y R G++E AR LF+   + D +SW A+
Sbjct: 141 HANHGLVSLARHYFD-LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNAL 199

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           +SGY Q G  S+A ELF +M       D V+   ++      G +   +RL      +  
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLF-----DAA 250

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------------------------- 410
             R++F  TAV+  YA+ G ++ A  VF  +P+                           
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 411 ---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
               + V+ +N++++G AQ G+ E + AVF  M     + D V++  +L A S GG  EE
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQGGCSEE 366

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRALLA 524
             Q F  M   G       + C++   A    L+   + +G +    Y     +  ALLA
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 145/417 (34%), Gaps = 117/417 (28%)

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           GLF SR  +  I       WN LM GY +     EA  L+  M  + +VS N      ++
Sbjct: 183 GLFNSRTEWDAIS------WNALMSGYVQWGKMSEARELFDRMPGRDVVSWN-----IMV 231

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +  AR        +    +       D+F   A++  Y+  G +  A +VF+    R+ V
Sbjct: 232 SGYARRGDMVEARR----LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV 287

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQ---------------------------DSCIQPD 209
           S+N ++  Y Q +    A  LF  M                            D+  Q D
Sbjct: 288 SWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347

Query: 210 AFTFVAMFSA-----------------------------------CTELNDPRIGKQFHA 234
           A ++ AM +A                                   C ++     G Q H 
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407

Query: 235 VVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            + +    +GC   N LL      MY KCG M  A   F  M   +   +W++MI+GY R
Sbjct: 408 RLIRAGYGVGCFVGNALLA-----MYFKCGNMEDARNAFEEM-EERDVVSWNTMIAGYAR 461

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G        F +                       +ALE+F  M +    PD++T+V V
Sbjct: 462 HG--------FGK-----------------------EALEIFDMMRTTSTKPDDITLVGV 490

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           L AC   G ++ G         +          T +ID+  + G +  A  +   +P
Sbjct: 491 LAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 73/342 (21%)

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---- 296
           G +   ++     I  + + G +  AER+F+ M   +ST+ +++M++GY+  G++     
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMP-RRSTSTYNAMLAGYSANGRLPLAAS 90

Query: 297 ---------------------------RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                                       AR LFD+M  RD V++  MIS ++  G  S A
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACV---------GL-----------------GALDF 363
              F     L    D V+   +L A V         GL                 G + +
Sbjct: 151 RHYF----DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQW 206

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK    + + + + GR++     ++  YA+ G +  A  +F   P  ++ V  + +++SG
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP--VRDVFTWTAVVSG 264

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            AQ+G+ E +  VF  M     + + V++  ++ A     +++E K+ F  M    +   
Sbjct: 265 YAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVA-- 318

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +  M+   A+ G L+EA  +  +MP   ++V W A+LAA
Sbjct: 319 --SWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 33/294 (11%)

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I+ + R G++  A +LF  M +R   ++ AM++GYS  G    A  LF  +      PD 
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            +   +L A     +L   + L  +     +  R+      +I  +A  G +  A   F 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDE-----MPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
             P+  K    +N +++   ++G  E +  +F        + D +++  ++      G +
Sbjct: 156 LAPE--KDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDAISWNALMSGYVQWGKM 209

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            E ++ F+ M    +      +  MV   AR G + EA  L  + P   +   W A+++ 
Sbjct: 210 SEARELFDRMPGRDVV----SWNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVSG 264

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
               +N  + E   +++ D  P+  A  V  + M+A       A   R++MD++
Sbjct: 265 --YAQNGMLEE--ARRVFDAMPERNA--VSWNAMVA-------AYIQRRMMDEA 305



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 108/261 (41%), Gaps = 46/261 (17%)

Query: 6   LEHSSLLALLESCK---SLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFR 60
           +  S+   +L +C    +L+  +Q+HG+++ +G  +   + ++ L  +F    C N +  
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFK---CGN-MED 436

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F +++  ++  WNT++ GY+R    +EAL ++  M+      P++ T   VL +C+
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACS 495

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                + G         + +  D  +     H+  +   +  A ++ E   A DL     
Sbjct: 496 HSGLVEKGISYF-----YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE---AHDL----- 542

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
                               M+D   +PD+  + A+  A     +P +G+     +++  
Sbjct: 543 --------------------MKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE-- 580

Query: 241 GCVGSNMLLKTAVINMYAKCG 261
                N  +   + N+YA  G
Sbjct: 581 -LEPENAGMYVLLSNIYASSG 600


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/624 (40%), Positives = 368/624 (58%), Gaps = 23/624 (3%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEF--DLFIRNALIHFYSIFGYINNAHKVFE- 168
           + F+L SCAR SS   G ++H  II  G+    + F+ NAL+ FY+  G    A KVF+ 
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 169 -GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
                +D V + TL+  + +      AL +F +M+   ++PD  T V +F  C  L D  
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 228 IGKQFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           +G Q H  + K  LG V        AV++MYAK GLM  A RVF  M   +S  +W+ ++
Sbjct: 136 VGAQGHGCMVKMGLGGVEKAC---NAVMDMYAKSGLMGEARRVFYEM-KGQSVVSWTVIL 191

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDE 345
            G  R   +   R +FD+M +R+ V+WT MI+GY   G   ++  L  +M   L +  + 
Sbjct: 192 DGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNY 251

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           VT+ ++L AC   G L  G+ +H   ++      NI + TA++DMYAKCG I  A   F 
Sbjct: 252 VTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFK 311

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           K+P+  + V  +N+++SGLA HGLG  ++ +F +M     KPD VTF +VL ACSH GLV
Sbjct: 312 KMPQ--RNVVSWNAMLSGLAMHGLGRAALDIFPQM-FKEAKPDDVTFTSVLSACSHSGLV 368

Query: 466 EEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++G  +F ++ + YGI P++EHY CMVDLL R GRL+EA  L++ MP   N V+  +LL 
Sbjct: 369 DQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLG 428

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           +C +H   ++GE   Q+L+ L+P +  +++LLSNM A   +   A  +R+++   GI+K 
Sbjct: 429 SCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKV 488

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD------ 638
           PG S I   G +H+F A  KSHP+T+E+  ML +M  +L+ AGY PNT    F       
Sbjct: 489 PGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLE 548

Query: 639 ---VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
              V++EEKE  +  HSEKLA+ FGLI++     + I KNLRIC DCH A K++S+IY R
Sbjct: 549 DDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNR 608

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           EI++RD  RFH FK+G+CSC D+W
Sbjct: 609 EIVIRDRNRFHCFKEGSCSCCDYW 632



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 220/506 (43%), Gaps = 87/506 (17%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNGLFRSRILFSQ 67
           LL SC    SL    ++H  I+ +G+     +   + L+ F+A  GC    +++R +F +
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCA---WQARKVFDE 75

Query: 68  I--DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           I   + +   W TLM  + R +   EAL+++  M   G V P+  T   +   CARL   
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG-VKPDEVTLVCLFGGCARLGDV 134

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING- 184
             G Q H  ++K GL       NA++  Y+  G +  A +VF     + +VS+  +++G 
Sbjct: 135 VVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGV 194

Query: 185 ------------YAQVKEPCPALW--LFRKMQDSCIQPDAF-----------------TF 213
                       + ++ E     W  +     DS +  ++F                 T 
Sbjct: 195 IRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTL 254

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
            ++ +AC++  D  +G+  HA   K       N+++ TA+++MYAKCG +++A + F  M
Sbjct: 255 CSILTACSQSGDLMMGRWVHAYALKTKE-KELNIMVGTAMVDMYAKCGRIHIAFKFFKKM 313

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQM---DQRDLVSWTAMISGYSQVGGFSQAL 330
              ++  +W++M+SG    G    A  +F QM    + D V++T+++S  S  G   Q  
Sbjct: 314 P-QRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVDQGC 372

Query: 331 ELFGKMES---------------------------------LGIHPDEVTMVAVLRACVG 357
             FG +ES                                 + I P+EV + ++L +C  
Sbjct: 373 FYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSI 432

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK-NLKTVSL 416
            G L  G+ L Q+ ++  +  +N      + +MYA  G  + A S+   + K  +K V  
Sbjct: 433 HGKLQLGEHLLQELVQ--LDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPG 490

Query: 417 FNSIISG--LAQHGLGETSIAVFREM 440
            +SI  G  + Q   G+ S    RE+
Sbjct: 491 MSSIHVGGQVHQFSAGDKSHPRTREV 516


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/743 (34%), Positives = 413/743 (55%), Gaps = 53/743 (7%)

Query: 18  CKS--LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
           CKS  L  A Q+  +I        I+ + ++S +  SG    L R     + +   +  +
Sbjct: 60  CKSSELNYARQLFDEISEP---DKIARTTMVSGYCASG-DITLARGVFEKAPVCMRDTVM 115

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-QIHCH 134
           +N ++ G+S ++    A+ L+  M  +G   P+NFTF  VL   A ++  +  C Q H  
Sbjct: 116 YNAMITGFSHNNDGYSAINLFCKMKHEGF-KPDNFTFASVLAGLALVADDEKQCVQFHAA 174

Query: 135 IIKFGLEFDLFIRNALIHFYSIFG----YINNAHKVFEGSLARD---------------- 174
            +K G  +   + NAL+  YS        +++A KVF+  L +D                
Sbjct: 175 ALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234

Query: 175 ----------------LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
                           LV+YN +I+GY        AL + R+M  S I+ D FT+ ++  
Sbjct: 235 FDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIR 294

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC      ++GKQ HA V +       +     +++++Y KCG  + A  +F  M  +K 
Sbjct: 295 ACATAGLLQLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP-AKD 350

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W++++SGY   G I  A+ +F +M +++++SW  MISG ++ G   + L+LF  M+ 
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G  P +      +++C  LGA   G++ H Q ++ + F  ++    A+I MYAKCG ++
Sbjct: 411 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVE 469

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF  +P  L +VS +N++I+ L QHG G  ++ V+ EM   G++PD +T +TVL A
Sbjct: 470 EARQVFRTMP-CLDSVS-WNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTA 527

Query: 459 CSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV++G+++F+SM   Y I P  +HY  ++DLL R G+  +A  +I+S+P+   + 
Sbjct: 528 CSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAE 587

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           IW ALL+ CR+H N ++G IA  KL  L P+H   Y+LLSNM A T +WEE  +VRKLM 
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMR 647

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D G++K    S+IE    +H FL    SHP+ + + + L+D+  +++  GYVP+T  V+ 
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLH 707

Query: 638 DVDEE-EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
           DV+ +  KE +++ HSEK+A+AFGL+      TIRI KNLR CGDCH  F+ LS + +R+
Sbjct: 708 DVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRD 767

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I++RD  RFH F+ G CSC +FW
Sbjct: 768 IILRDRKRFHHFRNGECSCGNFW 790



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 142/308 (46%), Gaps = 18/308 (5%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +SL++L   C    +A  I  ++    L   +S + L+S +  SG    +  ++++F ++
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAKDL---VSWNALLSGYVSSG---HIGEAKLIFKEM 377

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              NI  W  ++ G + +   +E L L++ M  +G   P ++ F   + SCA L ++ +G
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF-EPCDYAFSGAIKSCAVLGAYCNG 436

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q H  ++K G +  L   NALI  Y+  G +  A +VF      D VS+N LI    Q 
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH---AVVYKNLGCVGS 245
                A+ ++ +M    I+PD  T + + +AC+       G+++      VY+    +  
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYR----IPP 552

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQL 301
                  +I++  + G  + AE V  ++    +   W +++SG    G +E     A +L
Sbjct: 553 GADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612

Query: 302 FDQMDQRD 309
           F  + + D
Sbjct: 613 FGLIPEHD 620



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 176/417 (42%), Gaps = 88/417 (21%)

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG------- 324
           T G        + +I  Y +  ++  ARQLFD++ + D ++ T M+SGY   G       
Sbjct: 42  TFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARG 101

Query: 325 --------------------GFSQ------ALELFGKMESLGIHPDEVTMVAVLRACVGL 358
                               GFS       A+ LF KM+  G  PD  T  +VL A + L
Sbjct: 102 VFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL-AGLAL 160

Query: 359 GALDFGK--RLHQQYIENVVFGRNIFLTTAVIDMYAKCGS----IDTALSVFYKI----- 407
            A D  +  + H   +++   G    ++ A++ +Y+KC S    + +A  VF +I     
Sbjct: 161 VADDEKQCVQFHAAALKSGA-GYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDE 219

Query: 408 --------------------------PKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
                                       N+K V+ +N++ISG    G  + ++ + R M 
Sbjct: 220 RSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVA-YNAMISGYVNRGFYQEALEMVRRMV 278

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY-GCMVDLLARDGRL 500
             G++ D  T+ +V+ AC+  GL++ GKQ    +L    +    H+   +V L  + G+ 
Sbjct: 279 SSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR--EDFSFHFDNSLVSLYYKCGKF 336

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL--DLEPDHGAHYVLLSN 558
           DEA  + + MP   + V W ALL+          G I   KL+  +++  +   ++++ +
Sbjct: 337 DEARAIFEKMPAK-DLVSWNALLSG-----YVSSGHIGEAKLIFKEMKEKNILSWMIMIS 390

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSY---IEHNGTLHRFLASKKSHPQTKEI 612
            LAE    EE  ++   M   G + P  +++   I+    L  +   ++ H Q  +I
Sbjct: 391 GLAENGFGEEGLKLFSCMKREGFE-PCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI 446



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           A  + G + + G  P    +  ++        L++ ++L  +  E     R     T ++
Sbjct: 33  ARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIAR-----TTMV 87

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
             Y   G I  A  VF K P  ++   ++N++I+G + +  G ++I +F +M+  G KPD
Sbjct: 88  SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 449 GVTFVTVL------------CACSHGGLVEEGKQFFESMLN 477
             TF +VL            C   H   ++ G  +  S+ N
Sbjct: 148 NFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSN 188


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/761 (32%), Positives = 413/761 (54%), Gaps = 74/761 (9%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q+H Q V  GL HH+S  + L+  +  +G    +   R +F ++ + ++  WN+L+ GYS
Sbjct: 123 QVHCQCVKCGLVHHLSVGNSLVDMYTKTG---NVRDGRRVFDEMGDRDVVSWNSLLTGYS 179

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
            +    +   L+  M  +G   P+ +T   V+ + A   +   G QIH  ++K G E + 
Sbjct: 180 WNRFNDQVWELFCLMQVEG-YRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETER 238

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
            + N+LI   S  G + +A  VF+    +D VS+N++I G+    +   A   F  MQ +
Sbjct: 239 LVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLA 298

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK-------------- 250
             +P   TF ++  +C  L +  + +  H    K+      N+L                
Sbjct: 299 GAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDA 358

Query: 251 ----------------TAVINMYAKCGLMNMAERVFSTM--------------------- 273
                           TA+I+ Y + G  + A  +FS M                     
Sbjct: 359 FSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHA 418

Query: 274 -------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
                           KS++  ++++  + + G I  A ++F+ ++ +D+++W+AM++GY
Sbjct: 419 VFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGY 478

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG-LGALDFGKRLHQQYIENVVFGR 379
           +Q G   +A ++F ++   GI P+E T  +++ AC     +++ GK+ H  Y   +    
Sbjct: 479 AQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA-YAIKLRLNN 537

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
            + ++++++ +YAK G+I++A  +F K  K    VS +NS+ISG AQHG  + ++ VF E
Sbjct: 538 ALCVSSSLVTLYAKRGNIESAHEIF-KRQKERDLVS-WNSMISGYAQHGQAKKALEVFEE 595

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           M+   L+ D +TF+ V+ AC+H GLV +G+ +F  M+N + I P MEHY CM+DL +R G
Sbjct: 596 MQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAG 655

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
            L +A  +I  MP+   + +WR +LAA R+HRN ++G++A +K++ LEP H A YVLLSN
Sbjct: 656 MLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSN 715

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + A    W E   VRKLMD   ++K PG+S+IE     + FLA   SHP +  I   L +
Sbjct: 716 IYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSE 775

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           +  +L+  GY P+T  V  D+++E+KET++S+HSE+LA+AFGLI +  +  ++I KNLR+
Sbjct: 776 LNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRV 835

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CGDCH   KL+S + +R I+VRD+ RFH FK G CSC D+W
Sbjct: 836 CGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 220/462 (47%), Gaps = 42/462 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF Q    ++   N L+  YSR D  QEAL L+ S+   G+ SP+++T   VL+ CA   
Sbjct: 58  LFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGL-SPDSYTMSCVLSVCAGSF 116

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G Q+HC  +K GL   L + N+L+  Y+  G + +  +VF+    RD+VS+N+L+ 
Sbjct: 117 NGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLT 176

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY+  +       LF  MQ    +PD +T   + +A        IG Q HA+V K LG  
Sbjct: 177 GYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK-LG-F 234

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            +  L+  ++I+M +K G++  A  VF  M  +K + +W+SMI+G+   G+         
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNME-NKDSVSWNSMIAGHVINGQ--------- 284

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                DL                 +A E F  M+  G  P   T  +V+++C  L  L  
Sbjct: 285 -----DL-----------------EAFETFNNMQLAGAKPTHATFASVIKSCASLKELGL 322

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            + LH + +++ +   N  + TA++    KC  ID A S+F  +   +++V  + ++ISG
Sbjct: 323 VRVLHCKTLKSGL-STNQNVLTALMVALTKCKEIDDAFSLF-SLMHGVQSVVSWTAMISG 380

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             Q+G  + ++ +F  M   G+KP+  T+ T+L    H   + E       ++    +  
Sbjct: 381 YLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHAVFISE---IHAEVIKTNYEKS 436

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
                 ++D   + G + +A  + + +    + + W A+LA 
Sbjct: 437 SSVGTALLDAFVKIGNISDAVKVFELIE-TKDVIAWSAMLAG 477



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 58/412 (14%)

Query: 8   HSSLLALLESCKSLKQ---ALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSR 62
           H++  ++++SC SLK+      +H + + SGL  N ++ ++ ++   AL+ CK  +  + 
Sbjct: 304 HATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV---ALTKCKE-IDDAF 359

Query: 63  ILFSQIDN-PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            LFS +    ++  W  ++ GY ++    +A+ L++ M  +G V PN+FT+  +L    +
Sbjct: 360 SLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG-VKPNHFTYSTILT--VQ 416

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            + F S  +IH  +IK   E    +  AL+  +   G I++A KVFE    +D+++++ +
Sbjct: 417 HAVFIS--EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAM 474

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYK-- 238
           + GYAQ  E   A  +F ++    I+P+ FTF ++ +ACT        GKQFHA   K  
Sbjct: 475 LAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLR 534

Query: 239 --NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
             N  CV S++      + +YAK G +  A  +F      +   +W+SMISGY + G+ +
Sbjct: 535 LNNALCVSSSL------VTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAK 587

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
           +A ++F++M +R+L                                 D +T + V+ AC 
Sbjct: 588 KALEVFEEMQKRNL-------------------------------EVDAITFIGVISACA 616

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             G +  G+      I +      +   + +ID+Y++ G +  A+ +   +P
Sbjct: 617 HAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMP 668



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 169/365 (46%), Gaps = 41/365 (11%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F+ +  RDL  +N L+  Y++  +   AL LF  +  S + PD++T   + S C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
             +  +G+Q H        CV               KCGL++               +  
Sbjct: 115 SFNGTVGEQVHC------QCV---------------KCGLVH-------------HLSVG 140

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +S++  YT+ G +   R++FD+M  RD+VSW ++++GYS      Q  ELF  M+  G  
Sbjct: 141 NSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD  T+  V+ A    GA+  G ++H   ++ + F     +  ++I M +K G +  A  
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVK-LGFETERLVCNSLISMLSKSGMLRDARV 259

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + +N  +VS +NS+I+G   +G    +   F  M+L G KP   TF +V+ +C+  
Sbjct: 260 VFDNM-ENKDSVS-WNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA-- 315

Query: 463 GLVEEG--KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            L E G  +      L  G+         ++  L +   +D+A+ L   M    + V W 
Sbjct: 316 SLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWT 375

Query: 521 ALLAA 525
           A+++ 
Sbjct: 376 AMISG 380


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/706 (37%), Positives = 392/706 (55%), Gaps = 51/706 (7%)

Query: 22   KQALQIHGQIVHSGL-NHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
            ++  ++H  ++ SGL N  I+  + LI+ +A  G  N    + ++F  +DN +   WN++
Sbjct: 405  RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAIND---ACVVFRLMDNKDSVTWNSM 461

Query: 80   MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
            + G  ++    EA+  +  M  +  + P+NFT    L+SCA L     G Q+HC  +K G
Sbjct: 462  ITGLDQNKQFLEAVKTFQEM-RRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLG 520

Query: 140  LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC--PALWL 197
            L+ D+ + NAL+  Y   GY+    K F   L  D VS+N+LI   A   EP    A+  
Sbjct: 521  LDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALAD-SEPSMLEAVES 579

Query: 198  FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            F  M  +   P+  TF+ + +A + L+   +GKQ HA+V K    V ++  ++ A++  Y
Sbjct: 580  FLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKR--NVAADTAIENALLACY 637

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
             KCG M   E +FS M                                D++D VSW +MI
Sbjct: 638  GKCGDMGYCENIFSRMS-------------------------------DRQDEVSWNSMI 666

Query: 318  SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            SGY       +A+++   M   G   D  T   VL AC  +  L+ G  +H   +     
Sbjct: 667  SGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVR-ACL 725

Query: 378  GRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNSIISGLAQHGLGETSIAV 436
              +I + +A++DMYAKCG ID A   F  +P +NL +   +NS+ISG A+HG G  S+ +
Sbjct: 726  ESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYS---WNSMISGYARHGHGTKSLDL 782

Query: 437  FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
            F +M+L G  PD VTFV VL ACSH GLV EG   F+SM   YG+ P+MEH+ CMVDLL 
Sbjct: 783  FAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLG 842

Query: 496  RDGRLDEAYGLIQSMPYDANSVIWRALLAAC-RLH-RNAKIGEIAGQKLLDLEPDHGAHY 553
            R G L++    +  MP   N +IWR +L AC R + RN  +G  A + LL++EP +  +Y
Sbjct: 843  RVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNY 902

Query: 554  VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
            +LLSNM A   +W++  + R  M  + ++K  G S++     +H F+A  KSHP+   I 
Sbjct: 903  ILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIY 962

Query: 614  LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
              LK++  K++ AGY+P T   ++D++ E KE ++SYHSEK+A+AF ++   SK  IRI 
Sbjct: 963  EKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSKMPIRIL 1021

Query: 674  KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCH AFK +S+I  R+I++RD+ RFH F+ G CSC DFW
Sbjct: 1022 KNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 248/522 (47%), Gaps = 55/522 (10%)

Query: 17  SCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
           SC S K A ++H Q+  +G +N     + LI+ +A  G    L   R +F ++   N+  
Sbjct: 86  SCGS-KDAEELHLQLFKNGFVNDLFLCNTLINIYARVG---DLGSGRKVFDEMPLRNLVS 141

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF--KSGCQIHC 133
           W+ L+ GY+R+  P EA  L+  M+S G + PN++ F  V+ +C     +  K G QIH 
Sbjct: 142 WSCLISGYTRNRMPNEACELFRKMVSDGFM-PNHYAFGSVIRACQECGEYGLKFGMQIHG 200

Query: 134 HIIKFGLEFDLFIRNALIHFY-SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            + K     D+   N LI  Y +  G ++ A + F+    R+LVS N++I+ Y Q  +  
Sbjct: 201 LMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAV 260

Query: 193 PALWLFRKMQDSC----IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            A  +F  MQ       ++P+ +TF ++ SA   L +                   S ++
Sbjct: 261 SAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLAN-------------------SGLV 301

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L   ++    K G ++                  S+++SG+ + G I  A+ +F +M  R
Sbjct: 302 LLEQLLTRVEKSGFLH-------------DLYVGSALVSGFAKAGSIGYAKNIFQKMSYR 348

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKR- 366
           ++VS   +I G  +     +A+ELF +M +S+ ++P+  + + +L A      L+ GKR 
Sbjct: 349 NVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPN--SYMIILTAFPEFHVLENGKRK 406

Query: 367 ---LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
              +H   I + +    I +   +I+MYAKCG+I+ A  VF ++  N  +V+ +NS+I+G
Sbjct: 407 GSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVF-RLMDNKDSVT-WNSMITG 464

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           L Q+     ++  F+EM    L P   T ++ L +C+  G +  G+Q     L  G+   
Sbjct: 465 LDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLD 524

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +     ++ L    G + E      S+  D + V W +L+ A
Sbjct: 525 VSVSNALLALYGECGYVKECQKAF-SLMLDYDHVSWNSLIGA 565



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 127/536 (23%), Positives = 249/536 (46%), Gaps = 59/536 (11%)

Query: 8   HSSLLALLESCKS-----LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-S 61
           H +  +++ +C+      LK  +QIHG +  +   + +++S ++   ++ G   G+   +
Sbjct: 174 HYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVL--ISMYGNALGMVDYA 231

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI---VSPNNFTFPFVLNS 118
           R  F  I   N+   N+++  Y +      A  ++++M  + +   + PN +TF  ++++
Sbjct: 232 RRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISA 291

Query: 119 CARLSSFKSGC----QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
              L++  SG     Q+   + K G   DL++ +AL+  ++  G I  A  +F+    R+
Sbjct: 292 TCSLAN--SGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRN 349

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL----NDPRIGK 230
           +VS N LI G  + K    A+ LF +M+DS ++ +  +++ + +A  E     N  R G 
Sbjct: 350 VVSLNGLIIGLVRQKRGEEAVELFMEMKDS-VELNPNSYMIILTAFPEFHVLENGKRKGS 408

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           + HA + ++ G + + + +   +INMYAKCG +N A  V                     
Sbjct: 409 EVHAFLIRS-GLLNAQIAIGNGLINMYAKCGAINDACVV--------------------- 446

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
                      F  MD +D V+W +MI+G  Q   F +A++ F +M    ++P   TM++
Sbjct: 447 -----------FRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            L +C  LG +  G++LH + ++ +    ++ ++ A++ +Y +CG +      F  +  +
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLK-LGLDLDVSVSNALLALYGECGYVKECQKAF-SLMLD 553

Query: 411 LKTVSLFNSIISGLAQHGLGE-TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
              VS +NS+I  LA        ++  F  M   G  P+ VTF+T+L A S   L E GK
Sbjct: 554 YDHVS-WNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGK 612

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           Q    +L   +         ++    + G +     +   M    + V W ++++ 
Sbjct: 613 QIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISG 668


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/477 (45%), Positives = 323/477 (67%), Gaps = 8/477 (1%)

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA-AWSSMISGYTREGKIERARQLFDQMD 306
           ++   ++ +Y   G+++ A RVF T G +   A +W++M+SGY + G +E AR++F +M 
Sbjct: 152 VVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMP 211

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +R LVSW+AMI    + G FS+AL +F +M   G  PD V + +VL+AC  LGAL+ G+ 
Sbjct: 212 ERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRW 271

Query: 367 LHQQYIENVVFGR---NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           +H+ +++    GR   N+ L TA++DMY KCG +D A  VF  +    + V L+N++I G
Sbjct: 272 VHR-FLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQS--QDVVLWNAMIGG 328

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           LA +G G+ ++ +FR M  MG  P+  TFV VLCAC+H G V+EGK+ F SM ++GI+P+
Sbjct: 329 LAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPR 388

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            EHYGC+ DLL R G L+EA  ++  MP + ++  W AL+++C +H N  +GE  G+KL+
Sbjct: 389 REHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLI 448

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +LEPD G  YV+L N+ A    WE+A+ +RK+M++ G +K  G S+IE NG +H F +  
Sbjct: 449 ELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGD 508

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV-DEEEKETVVSYHSEKLALAFGLI 662
             HPQT++I  +L+DM  +L+  GYV +T QV+ D+ DEE+K   +SYHSE+LALAFG++
Sbjct: 509 TRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGIL 568

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           N+     IRI KNLR+C DCH+  KL+S++Y+REI++RD  RFHLF+ G CSC DFW
Sbjct: 569 NTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 161/389 (41%), Gaps = 75/389 (19%)

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGYAQ-- 187
           H   +K G      + N L+  Y   G +++A +VF+  G+ + D  S+NT+++GY +  
Sbjct: 139 HGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCG 198

Query: 188 ---------VKEPCPALWLFRKMQDSCI--------------------QPDAFTFVAMFS 218
                    V+ P   L  +  M D+CI                    +PDA    ++  
Sbjct: 199 DLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLK 258

Query: 219 ACTELNDPRIGKQFHAVV-YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           AC  L     G+  H  +  + LG    N++L+TA+++MY KCG M+ A  VF  +  S+
Sbjct: 259 ACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGV-QSQ 317

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
               W++MI G    G  +R                               ALELF +M 
Sbjct: 318 DVVLWNAMIGGLAMNGHGKR-------------------------------ALELFRRML 346

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
            +G  P+E T V VL AC   G +D GK + +   ++ +  R       + D+  + G +
Sbjct: 347 DMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRREHY-GCLADLLGRAGLL 405

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQH---GLGETSIAVFREMELMGLKPDGVTFVT 454
           + A +V   +P      S + +++S    H   G+GE       E+E      DG  +V 
Sbjct: 406 EEAEAVLLDMPME-PHASQWGALMSSCLMHNNVGVGERVGKKLIELE----PDDGGRYVV 460

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           +    +  GL E+ K   + M   G K +
Sbjct: 461 LFNLYAVNGLWEDAKALRKMMEERGAKKE 489



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 151/370 (40%), Gaps = 60/370 (16%)

Query: 18  CKSLKQALQIHGQIV-HSGLNHHISSSQLISFFALSGCKNGLFRSRILF--SQIDNPNIF 74
           C  L  A   HGQ + H  L H + ++ L+  +   G    L  +R +F  S   + + F
Sbjct: 129 CDRLAAAGLAHGQALKHGALAHPVVTNCLLKLYCALGM---LSDARRVFDTSGATSLDAF 185

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS---------------------------- 106
            WNT++ GY +    + A  ++  M  +G+VS                            
Sbjct: 186 SWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNG 245

Query: 107 --PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL---EFDLFIRNALIHFYSIFGYIN 161
             P+      VL +CA L + + G  +H  +   GL     ++ +  AL+  Y   G ++
Sbjct: 246 FRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMD 305

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A  VF+G  ++D+V +N +I G A       AL LFR+M D    P+  TFV +  ACT
Sbjct: 306 EAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACT 365

Query: 222 ELNDPRIGKQF------HAVVYK--NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
                  GK+       H +  +  + GC+           ++  + GL+  AE V   M
Sbjct: 366 HTGRVDEGKEIFRSMCDHGIEPRREHYGCLA----------DLLGRAGLLEEAEAVLLDM 415

Query: 274 GMSKSTAAWSSMISG---YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
            M    + W +++S    +   G  ER  +   +++  D   +  + + Y+  G +  A 
Sbjct: 416 PMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAK 475

Query: 331 ELFGKMESLG 340
            L   ME  G
Sbjct: 476 ALRKMMEERG 485


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/688 (36%), Positives = 386/688 (56%), Gaps = 49/688 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-QIHCH 134
           +N ++ GY+ +     AL L+ +M  +    P++FTF  VL++       +  C Q+HC 
Sbjct: 115 YNAMITGYAHNGDGHSALELFRAM-RRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 135 IIKFGLE-FDLFIRNALIHFYS----------------------------------IFGY 159
           ++K G+      + NAL+  Y                                   I GY
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 160 I-----NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           +     N A +VFE  +     ++N +I+GY        AL L RKM+   IQ D  T+ 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT--AVINMYAKCGLMNMAERVFST 272
            + SAC  +   ++GKQ HA + KN      +  L    A+I +Y K   ++ A ++F  
Sbjct: 294 TIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYA 353

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M + ++   W++++SGY   G++E A+  F++M  ++L++ T MISG +Q G   + L+L
Sbjct: 354 MPV-RNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M   G  P +      L AC  LGAL+ G++LH Q + ++ +  ++ +  A+I MYA
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV-HLGYESSLSVGNAMISMYA 471

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCG ++ A SVF  +P ++  VS +NS+I+ L QHG G  +I +F +M   G+ PD +TF
Sbjct: 472 KCGVVEAAESVFVTMP-SVDLVS-WNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITF 529

Query: 453 VTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           +TVL ACSH GLVE+G+ +F SML +YGI P  +HY  MVDL  R G    A  +I SMP
Sbjct: 530 LTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMP 589

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
               + +W ALLA CR+H N  +G  A ++L  L P +   YVLLSN+ A+  RW E  +
Sbjct: 590 SKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAK 649

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRKLM D  ++K P  S+IE    +H F+     HP+   +   L+ + +++K  GY+P+
Sbjct: 650 VRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPD 709

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V+ D++ E+KE  +S HSEKLA+ FG++      T+R+ KN+RICGDCH AFK +S+
Sbjct: 710 TKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSK 769

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + RREI+VRD  RFH FK G+CSC D+W
Sbjct: 770 VARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 213/434 (49%), Gaps = 54/434 (12%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D   R  LI  Y   G +    ++F G+    RD V YN +I GYA   +   AL LFR 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 201 MQDSCIQPDAFTFVAMFSACTEL--NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           M+    +PD FTF ++ SA      N+ + G+   AVV   +GCV S++L   A++++Y 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL--NALLSVYV 195

Query: 259 K--------CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           K        C  M  A ++F  M   +    W++MI+GY R   +  AR++F+ M +   
Sbjct: 196 KRASELGISCSAMVSARKLFDEMP-KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG 254

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
            +W AMISGY   G F +AL L  KM  LGI  D++T   ++ AC  +G+   GK++H  
Sbjct: 255 AAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAY 314

Query: 371 YIENVVFGRNIF---LTTAVIDMYAKCGSIDTALSVFYKIP------------------- 408
            ++N +   + F   ++ A+I +Y K   +D A  +FY +P                   
Sbjct: 315 ILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 409 -------------KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
                        KNL T+++   +ISGLAQ+G G+  + +F++M L G +P    F   
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTV---MISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGA 431

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           L ACS  G +E G+Q    +++ G +  +     M+ + A+ G ++ A  +  +MP   +
Sbjct: 432 LTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVD 490

Query: 516 SVIWRALLAACRLH 529
            V W +++AA   H
Sbjct: 491 LVSWNSMIAALGQH 504



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 217/518 (41%), Gaps = 110/518 (21%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNG-----LFRS 61
           S L AL+    + +Q  Q+H  +V +G+    SS  + L+S +     + G     +  +
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSA 211

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSP-------------------------------Q 90
           R LF ++   +   W T++ GY R+D                                 Q
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 91  EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE----FDLFI 146
           EAL L   M   GI   ++ T+  ++++CA + SF+ G Q+H +I+K  L     F L +
Sbjct: 272 EALTLCRKMRFLGI-QFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSV 330

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK---------EPCP---- 193
            NALI  Y     ++ A K+F     R+++++N +++GY             E  P    
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 194 ------------------ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
                              L LF++M+    +P  F F    +AC+ L     G+Q HA 
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           +  +LG   S++ +  A+I+MYAKCG++  AE VF TM  S    +W+SMI+   + G  
Sbjct: 451 LV-HLG-YESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGHG 507

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            +A +LFDQM +                                G+ PD +T + VL AC
Sbjct: 508 VKAIELFDQMLKE-------------------------------GVFPDRITFLTVLTAC 536

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              G ++ G+      +E+            ++D++ + G    A  V   +P       
Sbjct: 537 SHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK-PGAP 595

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           ++ ++++G   HG  +  I    ++  +  + DG T+V
Sbjct: 596 VWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDG-TYV 632



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 163/367 (44%), Gaps = 46/367 (12%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-----SSQLISFFALSGCKNG-LF 59
           + ++++++   +  S +   Q+H  I+ + LN + S     S+ LI+ +    CKN  + 
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLY----CKNNKVD 345

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS------------- 106
            +R +F  +   NI  WN ++ GY  +   +EA   +  M  K +++             
Sbjct: 346 EARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGF 405

Query: 107 -----------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
                            P +F F   L +C+ L + ++G Q+H  ++  G E  L + NA
Sbjct: 406 GDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNA 465

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           +I  Y+  G +  A  VF    + DLVS+N++I    Q      A+ LF +M    + PD
Sbjct: 466 MISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPD 525

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             TF+ + +AC+       G+ +   + ++ G           +++++ + G+ + A  V
Sbjct: 526 RITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY-ARMVDLFCRAGMFSYARIV 584

Query: 270 FSTMGMSKSTAAWSSMISGYTREGK----IERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
             +M        W ++++G    G     IE A QLF  M Q D  ++  + + Y+ VG 
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND-GTYVLLSNIYADVGR 643

Query: 326 FSQALEL 332
           +++  ++
Sbjct: 644 WNEVAKV 650



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 132/320 (41%), Gaps = 84/320 (26%)

Query: 285 MISGYTREGKIERARQLFDQMDQ---------------------------------RDLV 311
           ++  Y +   +  ARQLF+++                                   RD V
Sbjct: 54  LLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV--------------- 356
            + AMI+GY+  G    ALELF  M      PD+ T  +VL A V               
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 357 ----GLGALD----------FGKRLHQQYI--ENVVFGRNIF--------LT-TAVIDMY 391
               G+G +           + KR  +  I    +V  R +F        LT T +I  Y
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
            +   ++ A  VF  + +NL     +N++ISG    G  + ++ + R+M  +G++ D +T
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAA--WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDIT 291

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC------MVDLLARDGRLDEAYG 505
           + T++ AC++ G  + GKQ    +L   + P   H  C      ++ L  ++ ++DEA  
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPN--HSFCLSVSNALITLYCKNNKVDEARK 349

Query: 506 LIQSMPYDANSVIWRALLAA 525
           +  +MP   N + W A+L+ 
Sbjct: 350 IFYAMPV-RNIITWNAILSG 368



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 363 FGKRLHQQYIE--NVVFGRNIF---------LTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           F  RL + Y +  N+V+ R +F           T +I  Y   G+++    +F   P  +
Sbjct: 50  FLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYM 109

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           +    +N++I+G A +G G +++ +FR M     +PD  TF +VL A
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSA 156


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/707 (34%), Positives = 402/707 (56%), Gaps = 41/707 (5%)

Query: 37  NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           N  IS + LI+ ++  G    + ++R++F ++ + NI  WN+++ GY ++  PQEA  ++
Sbjct: 96  NFIISRNSLITRYSRLG---QIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF 152

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH---- 152
             M  +  +S N     ++ N     +          +++ +      +++  +I     
Sbjct: 153 DKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAET 212

Query: 153 -FYSI-----------------FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            F+ +                  G I+ A ++F+    +D+V+   +I GY QV     A
Sbjct: 213 LFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEA 272

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
             LF +M     + +  ++  M +   +     I ++   V+ +       N +  TA++
Sbjct: 273 RMLFDEMP----RRNVVSWTTMITGYVQNQQVDIARKLFEVMPE------KNEVSWTAML 322

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
             Y  CG ++ A  +F+ M + KS  A ++MI  + + G++ +ARQ+FDQM ++D  +W+
Sbjct: 323 KGYTNCGRLDEASELFNAMPI-KSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           AMI  Y + G    ALELF  M+  GI P+  ++++VL  C GL  LD G+ +H Q + +
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
             F  ++++ + ++ MY KCG++  A  VF +    +K V ++NSII+G AQHGLG  ++
Sbjct: 442 Q-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFA--VKDVVMWNSIITGYAQHGLGVEAL 498

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDL 493
            VF +M   G+ PD VTFV VL ACS+ G V++G + F SM   Y ++ ++EHY CMVDL
Sbjct: 499 RVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDL 558

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           L R G+L+EA  LI+ MP +A+++IW ALL ACR H    + E+A +KLL LEP +   +
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPF 618

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS-HPQTKEI 612
           +LLSN+ A   RW++  ++R+ M D  + K PG S+I     +H+F     S HP+  EI
Sbjct: 619 ILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEI 678

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
             +L+ ++  L+ AGY P+   V+ DVDEEEK   + YHSEKLA+A+GL+       IR+
Sbjct: 679 NRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRV 738

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCH A KL++++  REI++RDA RFH FK G+CSC D+W
Sbjct: 739 MKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 158/355 (44%), Gaps = 52/355 (14%)

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +  A +  EG+  RDLV  +  +    ++KE              C     ++   MFS 
Sbjct: 37  VGEAMRQSEGANDRDLVEGDGCVRMKKRLKER------------YCFSQPGYS---MFS- 80

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLL-KTAVINMYAKCGLMNMAERVFSTMGMSKS 278
                    G  F  +V     C  SN ++ + ++I  Y++ G +  A  VF  M   K+
Sbjct: 81  ---------GLMFFRLVLNRFYC--SNFIISRNSLITRYSRLGQIEKARVVFDEM-RDKN 128

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W+S+++GY +  + + A+ +FD+M +R+ +SW  ++SGY   G  ++A E+F +M  
Sbjct: 129 IISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPE 188

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
             +    V+  A++R  V  G +   + L  Q  E     +N+   T ++    + G ID
Sbjct: 189 RNV----VSWTAMVRGYVKEGMISEAETLFWQMPE-----KNVVSWTVMLGGLLQEGRID 239

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  +F  +P+  K V    ++I G  Q G    +  +F EM     + + V++ T++  
Sbjct: 240 EACRLFDMMPE--KDVVTRTNMIGGYCQVGRLVEARMLFDEMP----RRNVVSWTTMITG 293

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEH--YGCMVDLLARDGRLDEAYGLIQSMP 511
                 V+  ++ FE M      P+     +  M+      GRLDEA  L  +MP
Sbjct: 294 YVQNQQVDIARKLFEVM------PEKNEVSWTAMLKGYTNCGRLDEASELFNAMP 342


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/721 (34%), Positives = 408/721 (56%), Gaps = 51/721 (7%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSR 62
           L   H+S+L  L+  K L+Q   IH QI+ SGL H+   S+ L++ +   G    L  ++
Sbjct: 23  LAQPHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGL---LADAK 76

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F      N+  W  L+ G +++D   EA+ ++  M+  G   PN  T   VL + A L
Sbjct: 77  QIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMI-MGNFKPNAVTISSVLPAFANL 135

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              +    +HC  ++ G E ++F+  AL+  YS FG +  A ++FE    R++V++N ++
Sbjct: 136 GLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIV 195

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +GY+       A+ LF  M+   +  D +T +++  A   +   ++G   H  + +    
Sbjct: 196 SGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT--G 253

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             ++  +KTA++++Y     ++ A RVFS                               
Sbjct: 254 YENDKHIKTALMDIYVSHNCVDDAHRVFS------------------------------- 282

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP---DEVTMVAVLRACVGLG 359
            +M  +D+ +WT M++G+S    + +A++ F KM  LGI     D + ++ +L +C   G
Sbjct: 283 -EMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM--LGIQNLKLDSIALMGILSSCSHSG 339

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL  G+R+H   I+   F  NIF+ +AVIDMYA CG+++ A   FY + +  K V  +N+
Sbjct: 340 ALQQGRRVHALAIK-TCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE--KDVVCWNA 396

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +I+G   +G G  +I +F +M+  GL PD  TFV+VL ACSH G+V EG Q F  M+   
Sbjct: 397 MIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTS 456

Query: 480 -IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            + P ++HY C++D+L R G+LD AY  I +MP+  +  ++  LL ACR+H N K+G   
Sbjct: 457 HVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEI 516

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            QK+ ++EP+   +YVLLSNM A    WE  +  R  +    ++K PG+S IE N  ++ 
Sbjct: 517 SQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYT 576

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F+A +K HPQ  +IE +LK + +K+K AGYVPNT  ++ DV ++ K+ ++ +HSEK+A+A
Sbjct: 577 FMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIA 636

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGL+ ++ +  IRITKNLR C DCH A K +S+++ R ++++DA RFH+F+ G CSC D+
Sbjct: 637 FGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDY 696

Query: 719 W 719
           W
Sbjct: 697 W 697



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 157/336 (46%), Gaps = 19/336 (5%)

Query: 2   KRLVLEHSSLLALLESCKS---LKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKN 56
           K L+++  ++++L+ +  S   L+    IHG I+ +G   + HI ++ L+  +    C +
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTA-LMDIYVSHNCVD 275

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
              R   +FS++   ++  W  ++ G+S       A+  +  ML    +  ++     +L
Sbjct: 276 DAHR---VFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGIL 332

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +SC+   + + G ++H   IK     ++F+ +A+I  Y+  G + +A + F G   +D+V
Sbjct: 333 SSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ--FHA 234
            +N +I G         A+ LF +M+ S + PD  TFV++  AC+       G Q  +H 
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHM 452

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           V   +   V  N+     VI++  + G ++ A    + M        +S+++      G 
Sbjct: 453 VKTSH---VIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGN 509

Query: 295 I----ERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
           I    E ++++F +M+  D   +  + + Y+  G +
Sbjct: 510 IKLGHEISQKIF-EMEPNDAGYYVLLSNMYALAGNW 544


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/707 (34%), Positives = 402/707 (56%), Gaps = 41/707 (5%)

Query: 37  NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           N  IS + LI+ ++  G    + ++R++F ++ + NI  WN+++ GY ++  PQEA  ++
Sbjct: 96  NFIISRNSLITRYSRLG---QIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF 152

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH---- 152
             M  +  +S N     ++ N     +          +++ +      +++  +I     
Sbjct: 153 DKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAET 212

Query: 153 -FYSI-----------------FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            F+ +                  G I+ A ++F+    +D+V+   +I GY QV     A
Sbjct: 213 LFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEA 272

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
             LF +M     + +  ++  M +   +     I ++   V+ +       N +  TA++
Sbjct: 273 RMLFDEMP----RRNVVSWTTMITGYVQNQQVDIARKLFEVMPE------KNEVSWTAML 322

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
             Y  CG ++ A  +F+ M + KS  A ++MI  + + G++ +ARQ+FDQM ++D  +W+
Sbjct: 323 KGYTNCGRLDEASELFNAMPI-KSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           AMI  Y + G    ALELF  M+  GI P+  ++++VL  C GL  LD G+ +H Q + +
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
             F  ++++ + ++ MY KCG++  A  VF +    +K V ++NSII+G AQHGLG  ++
Sbjct: 442 Q-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFA--VKDVVMWNSIITGYAQHGLGVEAL 498

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDL 493
            VF +M   G+ PD VTFV VL ACS+ G V++G + F SM   Y ++ ++EHY CMVDL
Sbjct: 499 RVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDL 558

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           L R G+L+EA  LI+ MP +A+++IW ALL ACR H    + E+A +KLL LEP +   +
Sbjct: 559 LGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPF 618

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS-HPQTKEI 612
           +LLSN+ A   RW++  ++R+ M D  + K PG S+I     +H+F     S HP+  EI
Sbjct: 619 ILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEI 678

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
             +L+ ++  L+ AGY P+   V+ DVDEEEK   + YHSEKLA+A+GL+       IR+
Sbjct: 679 NRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRV 738

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCH A KL++++  REI++RDA RFH FK G+CSC D+W
Sbjct: 739 MKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 158/355 (44%), Gaps = 52/355 (14%)

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +  A +  EG+  RDLV  +  +    ++KE              C     ++   MFS 
Sbjct: 37  VGEAMRQSEGANDRDLVEGDGCVRMKKRLKER------------YCFSQPGYS---MFS- 80

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLL-KTAVINMYAKCGLMNMAERVFSTMGMSKS 278
                    G  F  +V     C  SN ++ + ++I  Y++ G +  A  VF  M   K+
Sbjct: 81  ---------GLMFFRLVLNRFYC--SNFIISRNSLITRYSRLGQIEKARVVFDEM-RDKN 128

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W+S+++GY +  + + A+ +FD+M +R+ +SW  ++SGY   G  ++A E+F +M  
Sbjct: 129 IISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPE 188

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
             +    V+  A++R  V  G +   + L  Q  E     +N+   T ++    + G ID
Sbjct: 189 RNV----VSWTAMVRGYVKEGMISEAETLFWQMPE-----KNVVSWTVMLGGLLQEGRID 239

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  +F  +P+  K V    ++I G  Q G    +  +F EM     + + V++ T++  
Sbjct: 240 EACRLFDMMPE--KDVVTRTNMIGGYCQVGRLVEARMLFDEMP----RRNVVSWTTMITG 293

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEH--YGCMVDLLARDGRLDEAYGLIQSMP 511
                 V+  ++ FE M      P+     +  M+      GRLDEA  L  +MP
Sbjct: 294 YVQNQQVDIARKLFEVM------PEKNEVSWTAMLKGYTNCGRLDEASELFNAMP 342


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/735 (36%), Positives = 392/735 (53%), Gaps = 84/735 (11%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF QI  P I  +N L+R YS    P  AL LY S+  + +  PNN+TFPFVL +C+
Sbjct: 82  ARHLFDQIPAPGIHDYNALIRAYSLR-GPALALRLYRSLRRRRLPQPNNYTFPFVLKACS 140

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L   +S   +HCH  + GL  DLF+  AL+  Y+      +A  VF    ARD+V++N 
Sbjct: 141 ALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNA 200

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           ++ GYA   +    +     MQD    P+A T VA+     +      G+  HA  Y   
Sbjct: 201 MLAGYALHGKYSDTIACLLLMQDD-HAPNASTLVALLPLLAQHGALSQGRAVHA--YSVR 257

Query: 241 GCV----GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            C        +L+ TA+++MYAKCG +  A RVF  M + ++   WS+++ G+   G++ 
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAV-RNEVTWSALVGGFVLCGRML 316

Query: 297 RARQLFDQMDQR----------------------------------------DLVSWTAM 316
            A  LF  M  +                                        DL +  ++
Sbjct: 317 EAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSL 376

Query: 317 ISGYSQVGGFSQALELFG-------------------------------KMESLGIHPDE 345
           +S Y++ G   QA  LF                                KM++  + PD 
Sbjct: 377 LSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDV 436

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            TMV+++ AC  L AL  GK  H   I   +      +  A+IDMYAKCG ID +  +F 
Sbjct: 437 ATMVSLIPACSHLAALQHGKCGHGSVIVRGI-ASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
            +P   + +  +N++I+G   HGLG+ + A+F +M+    +PD VTF+ ++ ACSH GLV
Sbjct: 496 VMPA--RDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLV 553

Query: 466 EEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
            EGK++F  M + YGI P+MEHY  MVDLLAR G LDEAY  IQ MP  A+  +W ALL 
Sbjct: 554 TEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLG 613

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           ACR+H+N  +G+     +  L P+   ++VLLSN+ +   R++EA +VR +  + G +K 
Sbjct: 614 ACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKS 673

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           PG S+IE NG+LH F+   +SH Q+ EI   L ++ + +   GY  +T  V+ DV+EEEK
Sbjct: 674 PGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEK 733

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           E  + YHSEKLA+AFG++     +TI +TKNLR+CGDCH   K ++ + +R I+VRDA R
Sbjct: 734 EKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANR 793

Query: 705 FHLFKKGNCSCMDFW 719
           FH FK G CSC DFW
Sbjct: 794 FHHFKNGQCSCGDFW 808



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 186/404 (46%), Gaps = 42/404 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHS-GLNHH----ISSSQLISFFALSGCKNGLFRSRIL 64
           +LL LL    +L Q   +H   V +  L+ H    +  + L+  +A   C + ++ SR+ 
Sbjct: 234 ALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYA--KCGHLVYASRV- 290

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +   N   W+ L+ G+       EA  L+  ML++G+   +  +    L +CA LS 
Sbjct: 291 FEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSD 350

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G Q+H  + K GL  DL   N+L+  Y+  G I+ A  +F+  + +D VSY+ L++G
Sbjct: 351 LCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSG 410

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y Q  +   A  +FRKMQ   +QPD  T V++  AC+ L   + GK  H  V   +  + 
Sbjct: 411 YVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVI--VRGIA 468

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S   +  A+I+MYAKCG ++++ ++F  M  ++   +W++MI+GY   G  + A  LF  
Sbjct: 469 SETSICNALIDMYAKCGRIDLSRQIFDVMP-ARDIVSWNTMIAGYGIHGLGKEATALFLD 527

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M                      QA E           PD+VT + ++ AC   G +  G
Sbjct: 528 MKH--------------------QACE-----------PDDVTFICLISACSHSGLVTEG 556

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           KR              +     ++D+ A+ G +D A      +P
Sbjct: 557 KRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMP 600



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 17/239 (7%)

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +  AR LFDQ+    +  + A+I  YS  G                  P+  T   VL
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC  L  L   + +H  +        ++F++TA++D+YAKC S   A +VF ++P   +
Sbjct: 137 KACSALLDLRSARAVH-CHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPA--R 193

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +N++++G A HG    +IA    M+     P+  T V +L   +  G + +G+   
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGR--- 249

Query: 473 ESMLNYGIKPQMEHY--------GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            ++  Y ++    H           ++D+ A+ G L  A  + ++M    N V W AL+
Sbjct: 250 -AVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALV 306


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 354/591 (59%), Gaps = 39/591 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+H H++  G   DL I N L++ Y+    I++A+ +F+G   RD  +++ ++ G+A+  
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           +       FR++    + PD +T   +   C +  D +IG+  H VV K+ G + S+  +
Sbjct: 81  DHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKH-GLL-SDHFV 138

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++++MYAKC +                                +E A++LF++M  +D
Sbjct: 139 CASLVDMYAKCIV--------------------------------VEDAQRLFERMLSKD 166

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           LV+WT MI  Y+    + ++L LF +M   G+ PD+V MV V+ AC  LGA+    R   
Sbjct: 167 LVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRA-RFAN 224

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YI    F  ++ L TA+IDMYAKCGS+++A  VF ++ +  K V  ++++I+    HG 
Sbjct: 225 DYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKE--KNVISWSAMIAAYGYHGR 282

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
           G+ +I +F  M    + P+ VTFV++L ACSH GL+EEG +FF SM   + ++P ++HY 
Sbjct: 283 GKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYT 342

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R GRLDEA  LI++M  + +  +W ALL ACR+H   ++ E A   LL+L+P 
Sbjct: 343 CMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQ 402

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +  HYVLLSN+ A+  +WE+  + R +M    ++K PGW++IE +   ++F    +SHPQ
Sbjct: 403 NPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQ 462

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
           +KEI  ML  +  KL+ AGYVP+T  V+ DV+EE K+ ++  HSEKLA+AFGLI     E
Sbjct: 463 SKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGE 522

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IRI+KNLR+CGDCH   K++S I RR I+VRDA RFH F  G CSC D+W
Sbjct: 523 PIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 187/396 (47%), Gaps = 40/396 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S + LL  C+++    Q+H  +V +G L   + +++L+  +A     +  +    LF  +
Sbjct: 5   SCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYS---LFDGL 61

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +   W+ ++ G++++         +  +L  G V+P+N+T PFV+ +C   +  + G
Sbjct: 62  TMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCG-VTPDNYTLPFVIRTCRDRTDLQIG 120

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH  ++K GL  D F+  +L+  Y+    + +A ++FE  L++DLV++  +I  YA  
Sbjct: 121 RVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADC 180

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                +L LF +M++  + PD    V + +AC +L      +  +  + +N      +++
Sbjct: 181 N-AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRN--GFSLDVI 237

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L TA+I+MYAKCG +  A  VF  M   K+  +WS+MI+ Y                   
Sbjct: 238 LGTAMIDMYAKCGSVESAREVFDRMK-EKNVISWSAMIAAY------------------- 277

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                     GY   G    A++LF  M S  I P+ VT V++L AC   G ++ G R  
Sbjct: 278 ----------GYHGRG--KDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFF 325

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
               E      ++   T ++D+  + G +D AL + 
Sbjct: 326 NSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLI 361


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/717 (33%), Positives = 399/717 (55%), Gaps = 50/717 (6%)

Query: 10  SLLALLESCKSLK---QALQIHGQIVHSGLNHHISSSQLI---SFFALSGCKNGLFRSRI 63
           ++ +LL +C S+    +  Q+H  ++  G+     SS LI   S   L      +  +  
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGM-----SSDLIIEGSLLDLYVKCFDIETAHE 370

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F   +  N+ +WN ++  Y +  +  E+  ++  M  +G++ PN +T+P +L +C  L 
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLM-PNQYTYPSILRTCTSLG 429

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G QIH  +IK G +F++++ + LI  Y+  G ++ A  + +     D+VS+  +I 
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIA 489

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY Q      AL LF++M++  I+ D   F +  SAC  +     G+Q HA  Y  +   
Sbjct: 490 GYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSY--ISGY 547

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ +  A++++YA+C                                G+ + A   F+
Sbjct: 548 SEDLSIGNALVSLYARC--------------------------------GRAQDAYLAFE 575

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           ++D +D +SW A+ISG++Q G   +AL++F +M   G+  +  T  + + A      +  
Sbjct: 576 KIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQ 635

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK++H   I+   +      +  +I +Y+KCGSI+ A   F+++P+  K V  +N++I+G
Sbjct: 636 GKQIHAMMIK-TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE--KNVVSWNAMITG 692

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
            +QHG G  ++++F EM+ +GL P+ VTFV VL ACSH GLV EG  +F SM   +G+ P
Sbjct: 693 YSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           + EHY C+VDLL R   L  A   I+ MP + +++IWR LL+AC +H+N +IGE A + L
Sbjct: 753 KPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 812

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           L+LEP+  A YVLLSNM A + +W+   + R++M D G++K PG S+IE   ++H F   
Sbjct: 813 LELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVG 872

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            + HP  ++I   + D+  +    GYV +   ++ DV++E+K+     HSEKLA+AFGL+
Sbjct: 873 DRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLL 932

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +  +   IR+ KNLR+C DCH   K +S+I  R I+VRDA RFH F+ G CSC D+W
Sbjct: 933 SLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 272/525 (51%), Gaps = 49/525 (9%)

Query: 7   EHSSLLALLESCKSLKQALQ----IHGQIVHSGLNHH-ISSSQLISFFALSGCKNG-LFR 60
           + S+  ++L +C   K   Q    IH +I+H G     +  + LI  ++    KNG +  
Sbjct: 110 DESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYS----KNGHVDL 165

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           ++++F ++   +   W  ++ G S++    EA++L+  M  K  V P  + F  VL++C 
Sbjct: 166 AKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM-HKSAVIPTPYVFSSVLSACT 224

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++  FK G Q+H  I+K+GL  + F+ NAL+  YS +G +  A ++F     RD +SYN+
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI+G AQ      AL LF KMQ  C++PD  T  ++ SAC  +     GKQ H+ V K +
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK-M 343

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G + S+++++ +++++Y KC                                  IE A +
Sbjct: 344 G-MSSDLIIEGSLLDLYVKC--------------------------------FDIETAHE 370

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
            F   +  ++V W  M+  Y Q+G  S++  +F +M+  G+ P++ T  ++LR C  LGA
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGA 430

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G+++H Q I++  F  N+++ + +IDMYAK G +DTA  +  ++ +  + V  + ++
Sbjct: 431 LDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRLRE--EDVVSWTAM 487

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           I+G  QH L   ++ +F+EME  G++ D + F + + AC+    + +G+Q        G 
Sbjct: 488 IAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGY 547

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +     +V L AR GR  +AY   + +    N + W AL++ 
Sbjct: 548 SEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISG 591



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 171/334 (51%), Gaps = 12/334 (3%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFS 66
           + S+L    S  +L    QIH Q++ SG   ++   S LI  +A  G    L  +R +  
Sbjct: 418 YPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG---ELDTARGILQ 474

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   ++  W  ++ GY++ D   EAL L+  M ++GI S +N  F   +++CA + +  
Sbjct: 475 RLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRS-DNIGFSSAISACAGIQALN 533

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G QIH      G   DL I NAL+  Y+  G   +A+  FE   A+D +S+N LI+G+A
Sbjct: 534 QGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFA 593

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      AL +F +M  + ++ + FTF +  SA     + + GKQ HA++ K      S 
Sbjct: 594 QSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKT--GYDSE 651

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                 +I +Y+KCG +  A+R F  M   K+  +W++MI+GY++ G    A  LF++M 
Sbjct: 652 TEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEAVSLFEEMK 710

Query: 307 QRDL----VSWTAMISGYSQVGGFSQALELFGKM 336
           Q  L    V++  ++S  S VG  ++ L  F  M
Sbjct: 711 QLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSM 744



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 226/502 (45%), Gaps = 79/502 (15%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           M  +GI   N  T+ ++   C    S     ++H  I K G + +  + + LI  Y   G
Sbjct: 1   MEERGI-RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHG 59

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            ++NA K+F+   + ++  +N +I+G    K     L LF  M    + PD  TF ++  
Sbjct: 60  EVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 219 ACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           AC+    P ++ +Q HA +  +    GS+ L+   +I++Y+K G +++A+ VF  + + K
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHH--GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFL-K 176

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRD---------------------------- 309
            + +W +MISG ++ G+ + A  LF QM +                              
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236

Query: 310 --LVSW---------TAMISGYSQVGGFSQALELFGKMESLG------------------ 340
             +V W          A+++ YS+ G    A ++F KM                      
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSD 296

Query: 341 -------------IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
                        + PD VT+ ++L AC  +GA   GK+LH  Y+  +    ++ +  ++
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLH-SYVIKMGMSSDLIIEGSL 355

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           +D+Y KC  I+TA   F  +    + V L+N ++    Q G    S  +F +M++ GL P
Sbjct: 356 LDLYVKCFDIETAHEYF--LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMP 413

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           +  T+ ++L  C+  G ++ G+Q    ++  G +  +     ++D+ A+ G LD A G++
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473

Query: 508 QSMPYDANSVIWRALLAACRLH 529
           Q +  + + V W A++A    H
Sbjct: 474 QRLR-EEDVVSWTAMIAGYTQH 494



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 152/321 (47%), Gaps = 11/321 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           SS ++     ++L Q  QIH Q   SG +  +S  + L+S +A  G     +   + F +
Sbjct: 520 SSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAY---LAFEK 576

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           ID  +   WN L+ G+++S   +EAL +++ M   G V  N FTF   +++ A  ++ K 
Sbjct: 577 IDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAG-VEANLFTFGSAVSATANTANIKQ 635

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH  +IK G + +    N LI  YS  G I +A + F     +++VS+N +I GY+Q
Sbjct: 636 GKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQ 695

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF +M+   + P+  TFV + SAC+ +     G  +   + K  G V    
Sbjct: 696 HGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPE 755

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFD 303
                V+++  +  L+  A      M +      W +++S  T    IE     AR L  
Sbjct: 756 HY-VCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLL- 813

Query: 304 QMDQRDLVSWTAMISGYSQVG 324
           +++  D  ++  + + Y+  G
Sbjct: 814 ELEPEDSATYVLLSNMYAVSG 834



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           ME  GI  +  T + +   C   G+L   K+LH +  ++   G ++ L + +ID+Y   G
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHG 59

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            +D A+ +F  IP +   VS +N +ISGL    L    + +F  M    + PD  TF +V
Sbjct: 60  EVDNAIKLFDDIPSS--NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASV 117

Query: 456 LCACSHG-GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACS G    +  +Q    ++++G          ++DL +++G +D A  + + + +  
Sbjct: 118 LRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL-FLK 176

Query: 515 NSVIWRALLAA--------------CRLHRNAKI 534
           +SV W A+++               C++H++A I
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI 210


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/690 (35%), Positives = 387/690 (56%), Gaps = 73/690 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +FS + N +   WN+L+ GY    S  EA+  Y SM+  G+++ N  TF  +L   +   
Sbjct: 93  IFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQG 152

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G QIH  I+KFG    +F+ ++L+  Y+  G ++ A +VF+    R++V YNT+I 
Sbjct: 153 CVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMIT 212

Query: 184 G-------------YAQVKEPCPALW------------------LFRKMQDSCIQPDAFT 212
           G             +  +KE     W                  LFR M+   +  D +T
Sbjct: 213 GLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYT 272

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           F ++ +AC  L   + GK+ H ++ ++      N+ + +A+++MY KC  +  AE VF  
Sbjct: 273 FGSVLTACGGLRALKEGKEIHTLIIRS--GYNHNVFVGSALVDMYCKCRSVRYAEAVFK- 329

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                          +M  +++VSWTAM+ GY Q G   +A+ +
Sbjct: 330 -------------------------------RMANKNVVSWTAMLVGYGQNGFSEEAVRV 358

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT--TAVIDM 390
           F  M+  GI PD+ T+ +V+ +C  L +L+ G + H Q +   V G   F+T   A+I +
Sbjct: 359 FCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQAL---VSGLISFITVSNALITL 415

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           Y KCGSI+ +  +F ++  + +    + +++SG AQ G    +I +F  M + GLKPD V
Sbjct: 416 YGKCGSIEDSNQLFDEM--SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAV 473

Query: 451 TFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           TF+ VL ACS  GLVE G+Q+FESML ++GI P  +HY CM+DL  R GRL+EA   I  
Sbjct: 474 TFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINK 533

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
           MP+  +S+ W  LL++CRL+ N +IG+ A + LL+L+P + A Y+LLS++ A   +W   
Sbjct: 534 MPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNV 593

Query: 570 RQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYV 629
            Q+R+ M + G +K PG+S+I++   ++ F A  +S P + +I   L+ +  K+   GYV
Sbjct: 594 AQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYV 653

Query: 630 PNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLL 689
           P+   V+ DV++ EK  ++++HSEKLA+AFGL+       IR+ KNLR+CGDCH A K +
Sbjct: 654 PDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYI 713

Query: 690 SEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S+I +REI+VRDA+RFHLFK G CSC DFW
Sbjct: 714 SKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 218/428 (50%), Gaps = 39/428 (9%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++HC IIK     + F+ N LI+ YS  G I  A  VF+     +  S+NT+++ Y++  
Sbjct: 26  KLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSG 85

Query: 190 EPCPALWLF--------------------------------RKMQDSCIQPDAFTFVAMF 217
           +      +F                                  M+D  +  +  TF  M 
Sbjct: 86  DLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTML 145

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
              +      +G+Q H  + K  G  G+ + + +++++MYAK GL+++A +VF  +   +
Sbjct: 146 LLVSSQGCVDLGRQIHGQIVK-FG-FGAYVFVGSSLVDMYAKMGLVSVASQVFDEV-QER 202

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           +   +++MI+G  R G ++ +++LF  M +RD +SWT MI+G  Q G  ++A++LF  M 
Sbjct: 203 NVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMR 262

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
             G+  D+ T  +VL AC GL AL  GK +H   I +  +  N+F+ +A++DMY KC S+
Sbjct: 263 QEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRS-GYNHNVFVGSALVDMYCKCRSV 321

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A +VF ++    K V  + +++ G  Q+G  E ++ VF +M+  G++PD  T  +V+ 
Sbjct: 322 RYAEAVFKRMAN--KNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVIS 379

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           +C++   +EEG QF    L  G+   +     ++ L  + G ++++  L   M +  + V
Sbjct: 380 SCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF-RDEV 438

Query: 518 IWRALLAA 525
            W AL++ 
Sbjct: 439 SWTALVSG 446


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/688 (36%), Positives = 386/688 (56%), Gaps = 49/688 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-QIHCH 134
           +N ++ GY+ +     AL L+ +M  +    P++FTF  VL++       +  C Q+HC 
Sbjct: 115 YNAMITGYAHNGDGHSALELFRAM-RRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 135 IIKFGLE-FDLFIRNALIHFYS----------------------------------IFGY 159
           ++K G+      + NAL+  Y                                   I GY
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 160 I-----NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           +     N A +VFE  +     ++N +I+GY        AL L RKM+   IQ D  T+ 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT--AVINMYAKCGLMNMAERVFST 272
            + SAC  +   ++GKQ HA + KN      +  L    A+I +Y K   ++ A ++F  
Sbjct: 294 TIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYA 353

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M + ++   W++++SGY   G++E A+  F++M  ++L++ T MISG +Q G   + L+L
Sbjct: 354 MPV-RNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M   G  P +      L AC  LGAL+ G++LH Q + ++ +  ++ +  A+I MYA
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV-HLGYESSLSVGNAMISMYA 471

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCG ++ A SVF  +P ++  VS +NS+I+ L QHG G  +I +F +M   G+ PD +TF
Sbjct: 472 KCGVVEAAESVFVTMP-SVDLVS-WNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITF 529

Query: 453 VTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           +TVL ACSH GLVE+G+ +F SML +YGI P  +HY  MVDL  R G    A  +I SMP
Sbjct: 530 LTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMP 589

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
               + +W ALLA CR+H N  +G  A ++L  L P +   YVLLSN+ A+  RW +  +
Sbjct: 590 SKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAK 649

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRKLM D  ++K P  S+IE    +H F+     HP+   +   L+ + +++K  GY+P+
Sbjct: 650 VRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPD 709

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V+ D++ E+KE  +S HSEKLA+ FG++      T+R+ KN+RICGDCH AFK +S+
Sbjct: 710 TKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSK 769

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + RREI+VRD  RFH FK G+CSC D+W
Sbjct: 770 VARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 213/434 (49%), Gaps = 54/434 (12%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D   R  LI  Y   G +    ++F G+    RD V YN +I GYA   +   AL LFR 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 201 MQDSCIQPDAFTFVAMFSACTEL--NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           M+    +PD FTF ++ SA      N+ + G+   AVV   +GCV S++L   A++++Y 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL--NALLSVYV 195

Query: 259 K--------CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           K        C  M  A ++F  M   +    W++MI+GY R   +  AR++F+ M +   
Sbjct: 196 KRASELGIPCSAMVSARKLFDEMP-KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG 254

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
            +W AMISGY   G F +AL L  KM  LGI  D++T   ++ AC  +G+   GK++H  
Sbjct: 255 AAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAY 314

Query: 371 YIENVVFGRNIF---LTTAVIDMYAKCGSIDTALSVFYKIP------------------- 408
            ++N +   + F   ++ A+I +Y K   +D A  +FY +P                   
Sbjct: 315 ILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 409 -------------KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
                        KNL T+++   +ISGLAQ+G G+  + +F++M L G +P    F   
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTV---MISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGA 431

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           L ACS  G +E G+Q    +++ G +  +     M+ + A+ G ++ A  +  +MP   +
Sbjct: 432 LTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVD 490

Query: 516 SVIWRALLAACRLH 529
            V W +++AA   H
Sbjct: 491 LVSWNSMIAALGQH 504



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 217/518 (41%), Gaps = 110/518 (21%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNG-----LFRS 61
           S L AL+    + +Q  Q+H  +V +G+    SS  + L+S +     + G     +  +
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSA 211

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSP-------------------------------Q 90
           R LF ++   +   W T++ GY R+D                                 Q
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 91  EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE----FDLFI 146
           EAL L   M   GI   ++ T+  ++++CA + SF+ G Q+H +I+K  L     F L +
Sbjct: 272 EALTLCRKMRFLGI-QFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSV 330

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK---------EPCP---- 193
            NALI  Y     ++ A K+F     R+++++N +++GY             E  P    
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 194 ------------------ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
                              L LF++M+    +P  F F    +AC+ L     G+Q HA 
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           +  +LG   S++ +  A+I+MYAKCG++  AE VF TM  S    +W+SMI+   + G  
Sbjct: 451 LV-HLG-YESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGHG 507

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            +A +LFDQM +                                G+ PD +T + VL AC
Sbjct: 508 VKAIELFDQMLKE-------------------------------GVFPDRITFLTVLTAC 536

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              G ++ G+      +E+            ++D++ + G    A  V   +P       
Sbjct: 537 SHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK-PGAP 595

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           ++ ++++G   HG  +  I    ++  +  + DG T+V
Sbjct: 596 VWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDG-TYV 632



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 158/359 (44%), Gaps = 46/359 (12%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-----SSQLISFFALSGCKNG-LF 59
           + ++++++   +  S +   Q+H  I+ + LN + S     S+ LI+ +    CKN  + 
Sbjct: 290 ITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLY----CKNNKVD 345

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS------------- 106
            +R +F  +   NI  WN ++ GY  +   +EA   +  M  K +++             
Sbjct: 346 EARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGF 405

Query: 107 -----------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
                            P +F F   L +C+ L + ++G Q+H  ++  G E  L + NA
Sbjct: 406 GDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNA 465

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           +I  Y+  G +  A  VF    + DLVS+N++I    Q      A+ LF +M    + PD
Sbjct: 466 MISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPD 525

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             TF+ + +AC+       G+ +   + ++ G           +++++ + G+ + A  V
Sbjct: 526 RITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY-ARMVDLFCRAGMFSYARIV 584

Query: 270 FSTMGMSKSTAAWSSMISGYTREGK----IERARQLFDQMDQRDLVSWTAMISGYSQVG 324
             +M        W ++++G    G     IE A QLF  M Q D  ++  + + Y+ VG
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND-GTYVLLSNIYADVG 642



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 363 FGKRLHQQYIE--NVVFGRNIF---------LTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           F  RL + Y +  NVV+ R +F           T +I  Y   G+++    +F   P  +
Sbjct: 50  FLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYM 109

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           +    +N++I+G A +G G +++ +FR M     +PD  TF +VL A
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSA 156


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 387/667 (58%), Gaps = 49/667 (7%)

Query: 64  LFSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           LF++ +D  ++F WN+++   +RS    EAL  ++SM  K  + P   +FP  + +C+ L
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSM-RKLSLYPTRSSFPCAIKACSSL 89

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
               SG Q H     FG + D+F+ +ALI  YS  G + +A KVF+    R++VS+ ++I
Sbjct: 90  LDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 183 NGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
            GY        A+ LF+ +       D+ +  D+   V++ SAC+ +    + +  H+ V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFV 209

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR--EGK 294
            K                                   G  +  +  ++++  Y +  EG 
Sbjct: 210 IKR----------------------------------GFDRGVSVGNTLLDAYAKGGEGG 235

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLR 353
           +  AR++FDQ+  +D VS+ +++S Y+Q G  ++A ++F ++ +   +  + +T+  VL 
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLL 295

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           A    GAL  GK +H Q I  +    ++ + T++IDMY KCG ++TA   F ++ KN K 
Sbjct: 296 AVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARLAFDRM-KN-KN 352

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + ++I+G   HG    ++ +F  M   G++P+ +TFV+VL ACSH GL + G  +F 
Sbjct: 353 VRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFN 412

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           +M   +G++P +EHYGCMVDLL R G L +AY LIQ M  + +S+IW +LLAACR+H+N 
Sbjct: 413 AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNV 472

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++ EI+  +L +L+P +  +Y+LLS++ A++ RW++  +VR  M + G+ KPPG+S +E 
Sbjct: 473 ELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLEL 532

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           NG +H FL   + HPQ ++I   L ++  KL  AGYV NT  V  DVDEEEKE  +  HS
Sbjct: 533 NGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHS 592

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFG++N+    T+ + KNLR+C DCH   KL+S+I  RE +VRDA RFH FK G 
Sbjct: 593 EKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGF 652

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 653 CSCGDYW 659



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 209/460 (45%), Gaps = 59/460 (12%)

Query: 1   MKRLVL--EHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHI-SSSQLISFFALSGC 54
           M++L L    SS    +++C SL       Q H Q    G    I  SS LI  ++  G 
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG- 125

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-----SKGIVSPNN 109
              L  +R +F +I   NI  W +++RGY  + +  +A+ L+  +L         +  ++
Sbjct: 126 --KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDS 183

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY--INNAHKVF 167
                V+++C+R+++      IH  +IK G +  + + N L+  Y+  G   +  A K+F
Sbjct: 184 MGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIF 243

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDP 226
           +  + +D VSYN++++ YAQ      A  +FR++ ++  +  +  T   +  A +     
Sbjct: 244 DQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGAL 303

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           RIGK  H  V + +G +  ++++ T++I+MY KCG +  A   F  M  +K+  +W++MI
Sbjct: 304 RIGKCIHDQVIR-MG-LEDDVIVGTSIIDMYCKCGRVETARLAFDRM-KNKNVRSWTAMI 360

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
           +GY   G                                 ++ALELF  M   G+ P+ +
Sbjct: 361 AGYGMHGHA-------------------------------AKALELFPAMIDSGVRPNYI 389

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVF 404
           T V+VL AC   G  D G   H        FG    L     ++D+  + G +  A  + 
Sbjct: 390 TFVSVLAACSHAGLHDVG--WHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 405 YKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREME 441
            K+     ++ +++S+++    H    L E S+A   E++
Sbjct: 448 QKMKMEPDSI-IWSSLLAACRIHKNVELAEISVARLFELD 486


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/711 (35%), Positives = 400/711 (56%), Gaps = 41/711 (5%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           +LL  C+ L +  ++H QI    L+ +    + L+  ++  G  +G   +++ F +I   
Sbjct: 40  SLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHG---AQLAFGRITLH 96

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N   WN LM  Y+++  P+ A  L+  M S+G V PN  T    L +C    +   G ++
Sbjct: 97  NAHSWNILMAAYAQNGHPRGAATLFHWMCSQG-VRPNAVTLSTALLACTAARNLALGRKL 155

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           +  I    LE D  + ++LI  Y     I  A + F+ S  +D+V +  +I+ YA     
Sbjct: 156 NELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRT 215

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL L R+M    I+    T+V++  AC    D R G  FH      +G   S+ ++  
Sbjct: 216 SRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAA-IGLDRSSTVVAG 274

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
            ++N+Y KCG                                +++ AR++ D M  R  V
Sbjct: 275 TLVNLYGKCG--------------------------------RVDDARRVLDAMPVRTSV 302

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           SWTAMI+ Y+Q G  ++A+ LF  M+  G  P ++T+++V+ +C  LG L  GKR+H + 
Sbjct: 303 SWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARI 362

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
             +  F +++ L  AVI MY KCG+++ A  VF  +P   ++V  + ++I   AQ+G+GE
Sbjct: 363 RSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGE 422

Query: 432 TSIAVFREMEL-MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGC 489
            +I +F+EM +  G +P+ VTF++VLCACSH G +E+  + F SM  ++G+ P  +HY C
Sbjct: 423 EAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCC 482

Query: 490 MVDLLARDGRLDEAYGLI-QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           +VDLL R GRL EA  L+ +   ++A+ V W A L+AC+++ + +  + A +++ +LEP+
Sbjct: 483 LVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPE 542

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           + A  VLLSN+ A   R  +  ++R  M  SG++K  G S+IE N  +H F+ S  SHP+
Sbjct: 543 NVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPR 602

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
             EI   L+ +  ++K AGYVP+T  V+ DVDEE+K  ++ YHSE+LA+A G+I++    
Sbjct: 603 KLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGT 662

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           T+R+ KNLR+C DCH A K +S+I  R+I+VRD  RFH FK G CSC D+W
Sbjct: 663 TLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 169/391 (43%), Gaps = 41/391 (10%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRIL 64
           + ++LL++C S   L+  +  H +    GL+    + +  L++ +   G  +    +R +
Sbjct: 236 TYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDD---ARRV 292

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
              +       W  ++  Y+++ +  EA+ L+  M  +G   P++ T   V++SCA L +
Sbjct: 293 LDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEG-AEPSDITLISVVDSCAVLGT 351

Query: 125 FKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGS--LARDLVSYNTL 181
              G +IH  I         L + NA+I  Y   G +  A +VFE      R +V++  +
Sbjct: 352 LSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAM 411

Query: 182 INGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           I  YAQ      A+ LF++M  D   +P+  TF+++  AC+ L     G+   A  +++ 
Sbjct: 412 IRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHL-----GQLEQA--WEHF 464

Query: 241 GCVGSNMLLKTA------VINMYAKCGLMNMAER-VFSTMGMSKSTAAWSSMISGYTREG 293
             +G +  +  A      ++++  + G +  AE+ +            W + +S     G
Sbjct: 465 CSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNG 524

Query: 294 KIE---RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
            +E   RA +   +++  ++     + + Y+  G  +    +  +M+S G+         
Sbjct: 525 DLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGV--------- 575

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
             +   G   ++   R+H+  + +V   R +
Sbjct: 576 --KKFAGRSWIEINNRVHEFMVSDVSHPRKL 604


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/611 (40%), Positives = 348/611 (56%), Gaps = 71/611 (11%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSL 171
           + L+SC+ ++  K   Q H  II+ GL  D      +I F +I   GY+          L
Sbjct: 25  YGLDSCSTMAELK---QYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLR-------WQL 74

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
           AR+ +                   +++ +M    + P+ FT+  +  AC        GKQ
Sbjct: 75  ARNCI-------------------FMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ 115

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            HA V K                                   G      + +++I  Y  
Sbjct: 116 IHAHVLK----------------------------------FGFGADGFSLNNLIHMYVN 141

Query: 292 EGKIERARQLFDQMDQRDL--VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
              +E+AR++FD M QRD   VSW AMI+ Y Q     +A  LF +M    +  D+    
Sbjct: 142 FQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 201

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++L AC GLGAL+ GK +H  YIE      +  L T VIDMY KCG ++ A  VF ++P+
Sbjct: 202 SMLSACTGLGALEQGKWIHG-YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ 260

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K +S +N +I GLA HG GE +I +F+EME   + PDG+TFV VL AC+H GLVEEGK
Sbjct: 261 --KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 318

Query: 470 QFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            +F+ M    G+KP MEH+GCMVDLL R G L+EA  LI  MP + ++ +  AL+ ACR+
Sbjct: 319 HYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI 378

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H N ++GE  G+K+++LEP +   YVLL+N+ A   RWE+  +VRKLM+D G++K PG+S
Sbjct: 379 HGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFS 438

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE    +  F+A  ++HPQ KEI   L ++   ++S GYVP+T  V+ D+DEEEKE  +
Sbjct: 439 MIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPL 498

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
            YHSEKLA+AFGL+ ++  ET+RI+KNLRIC DCH A KL+S++Y REI++RD  RFH F
Sbjct: 499 YYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 558

Query: 709 KKGNCSCMDFW 719
           + G CSC D+W
Sbjct: 559 RMGGCSCKDYW 569



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 189/430 (43%), Gaps = 69/430 (16%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
           H   L  L+SC ++ +  Q H QI+  GL+  + +  ++I F A+S              
Sbjct: 20  HKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAIS-------------- 65

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
                          GY R    +  + +Y+ ML K  VSPN FT+P ++ +C    + +
Sbjct: 66  -------------KSGYLRWQLARNCIFMYSRMLHKS-VSPNKFTYPPLIRACCIDYAIE 111

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL--VSYNTLING 184
            G QIH H++KFG   D F  N LIH Y  F  +  A +VF+    RD   VS+N +I  
Sbjct: 112 EGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAA 171

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y Q      A  LF +M+   +  D F   +M SACT L     GK  H  + K+   + 
Sbjct: 172 YVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS--GIE 229

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            +  L T VI+MY KCG +  A  VF+ +   K  ++W+ MI G    GK E A +LF +
Sbjct: 230 LDSKLATTVIDMYCKCGCLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAAIELFKE 288

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M +R++V+                              PD +T V VL AC   G ++ G
Sbjct: 289 M-EREMVA------------------------------PDGITFVNVLSACAHSGLVEEG 317

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K   Q   E +     +     ++D+  + G ++ A  +  ++P N     +  +++   
Sbjct: 318 KHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN-PDAGVLGALVGAC 376

Query: 425 AQHG---LGE 431
             HG   LGE
Sbjct: 377 RIHGNTELGE 386



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 157/360 (43%), Gaps = 13/360 (3%)

Query: 20  SLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID--NPNIFIW 76
           ++++  QIH  ++  G      S + LI  +        L ++R +F  +   + N   W
Sbjct: 109 AIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNF---QSLEQARRVFDNMPQRDRNSVSW 165

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N ++  Y +S+   EA  L+  M  + +V  + F    +L++C  L + + G  IH +I 
Sbjct: 166 NAMIAAYVQSNRLHEAFALFDRMRLENVVL-DKFVAASMLSACTGLGALEQGKWIHGYIE 224

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K G+E D  +   +I  Y   G +  A +VF     + + S+N +I G A   +   A+ 
Sbjct: 225 KSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIE 284

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           LF++M+   + PD  TFV + SAC        GK +   + + LG +   M     ++++
Sbjct: 285 LFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLG-LKPGMEHFGCMVDL 343

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---QMDQRDLVSW 313
             + GL+  A ++ + M ++       +++      G  E   Q+     +++  +   +
Sbjct: 344 LGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRY 403

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
             + + Y+  G +    ++   M   G+   +    +++ +  G+     G R H Q  E
Sbjct: 404 VLLANLYASAGRWEDVAKVRKLMNDRGV--KKAPGFSMIESESGVDEFIAGGRAHPQAKE 461


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/549 (41%), Positives = 345/549 (62%), Gaps = 16/549 (2%)

Query: 178 YNTLING--YAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +N LI     ++V+ P   PAL L+ +M+   + PD  TF  +  +   +N P  G+Q H
Sbjct: 27  WNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQLH 83

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A +   L  + ++  ++T++INMY+ CG    A + F  +       +W+++I    + G
Sbjct: 84  AQIL--LLGLANDPFVQTSLINMYSSCGTPTFARQAFDEI-TQPDLPSWNAIIHANAKAG 140

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL---GIHPDEVTMVA 350
            I  AR+LFDQM +++++SW+ MI GY   G +  AL LF  +++L    + P+E TM +
Sbjct: 141 MIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSS 200

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC  LGAL  GK +H  YI+      ++ L T++IDMYAKCGSI+ A  +F  +   
Sbjct: 201 VLSACARLGALQHGKWVHA-YIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE 259

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K V  ++++I+  + HGL E  + +F  M   G++P+ VTFV VLCAC HGGLV EG +
Sbjct: 260 -KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNE 318

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F+ M+N YG+ P ++HYGCMVDL +R GR+++A+ +++SMP + + +IW ALL   R+H
Sbjct: 319 YFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIH 378

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            + +  EIA  KLL+L+P + + YVLLSN+ A+  RW E R +R LM+  GI+K PG S 
Sbjct: 379 GDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSL 438

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           +E +G +  F A   SHP+   + +ML ++  +L+  GY  NT +V+ D+DEE KE  +S
Sbjct: 439 VEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALS 498

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSEKLA+A+  + +    TIRI KNLRIC DCH+A K++S+ + REI+VRD  RFH FK
Sbjct: 499 LHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFK 558

Query: 710 KGNCSCMDF 718
            G CSC D+
Sbjct: 559 NGLCSCKDY 567



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 199/417 (47%), Gaps = 79/417 (18%)

Query: 67  QIDNPNI--FIWNTLMRGYSRS--DSP--QEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            + +PNI  F+WN L+R  +RS   +P    AL LY  M    ++ P+  TFPF+L S  
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVL-PDLHTFPFLLQS-- 72

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI------------------------ 156
            +++   G Q+H  I+  GL  D F++ +LI+ YS                         
Sbjct: 73  -INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNA 131

Query: 157 -------FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD---SCI 206
                   G I+ A K+F+    ++++S++ +I+GY    E   AL LFR +Q    S +
Sbjct: 132 IIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQL 191

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           +P+ FT  ++ SAC  L   + GK  HA + K    +  +++L T++I+MYAKCG +  A
Sbjct: 192 RPNEFTMSSVLSACARLGALQHGKWVHAYIDKT--GMKIDVVLGTSLIDMYAKCGSIERA 249

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
           + +F  +G  K   AWS+MI+ ++  G  E                              
Sbjct: 250 KCIFDNLGPEKDVMAWSAMITAFSMHGLSE------------------------------ 279

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
            + LELF +M + G+ P+ VT VAVL ACV  G +  G    ++ +        I     
Sbjct: 280 -ECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGC 338

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET-SIAVFREMEL 442
           ++D+Y++ G I+ A +V   +P     V ++ ++++G   HG  ET  IA+ + +EL
Sbjct: 339 MVDLYSRAGRIEDAWNVVKSMPME-PDVMIWGALLNGARIHGDVETCEIAITKLLEL 394



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 164/343 (47%), Gaps = 19/343 (5%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFS 66
            +SL+ +  SC +   A Q   +I    L    S + +I     +  K G+   +R LF 
Sbjct: 98  QTSLINMYSSCGTPTFARQAFDEITQPDLP---SWNAIIH----ANAKAGMIHIARKLFD 150

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM--LSKGIVSPNNFTFPFVLNSCARLSS 124
           Q+   N+  W+ ++ GY      + AL L+ S+  L    + PN FT   VL++CARL +
Sbjct: 151 QMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGA 210

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLIN 183
            + G  +H +I K G++ D+ +  +LI  Y+  G I  A  +F+     +D+++++ +I 
Sbjct: 211 LQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMIT 270

Query: 184 GYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            ++   + E C  L LF +M +  ++P+A TFVA+  AC        G ++   +    G
Sbjct: 271 AFSMHGLSEEC--LELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYG 328

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            V   +     ++++Y++ G +  A  V  +M M      W ++++G    G +E     
Sbjct: 329 -VSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIA 387

Query: 302 FDQMDQRDLVSWTAMI---SGYSQVGGFSQALELFGKMESLGI 341
             ++ + D  + +A +   + Y+++G + +   L   ME  GI
Sbjct: 388 ITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGI 430


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 371/658 (56%), Gaps = 20/658 (3%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   ++  WN ++   S+S   +EAL +   M  KG V P++ T+   L +CARLS
Sbjct: 247 IFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKG-VRPDSTTYTSSLTACARLS 305

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           S + G Q+H  +I+     D ++ +A++  Y+  G    A +VF     R+ VS+  LI 
Sbjct: 306 SLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIG 365

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+ Q      ++ LF +M+   +  D F    + S C    D  +G Q H++  K+    
Sbjct: 366 GFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTR 425

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
              +++  ++I+MYAKCG +  AE +F+ M   +   +W+ MI+ Y++ G I +AR+ FD
Sbjct: 426 A--VVVSNSLISMYAKCGNLQNAELIFNFMA-ERDIVSWTGMITAYSQVGNIAKAREFFD 482

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALD 362
            M  R++++W AM+  Y Q G     L+++  M     + PD VT V + R C  +GA  
Sbjct: 483 DMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK 542

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G ++    ++ V    +  +  AVI MY+KCG I  A   F  + +  K +  +N++I+
Sbjct: 543 LGDQIIGHTVK-VGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR--KDLVSWNAMIT 599

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
           G +QHG+G+ +I +F ++   G KPD +++V VL  CSH GLVEEGK +F+ M  ++ I 
Sbjct: 600 GYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNIS 659

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P +EH+ CMVDLL R G L EA  LI  MP    + +W ALL+AC+ H N  + E+A + 
Sbjct: 660 PGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKH 719

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L DL+      Y+LL+ M A+  + +++ QVRKLM D GI+K PG+S++E N  +H F A
Sbjct: 720 LFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKA 779

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
              SHPQ   I   L ++  K+   GYV           E  +  +  +HSEKLA+AFG+
Sbjct: 780 EDVSHPQVIAIREKLDELMEKIAHLGYVRT---------ESPRSEI--HHSEKLAVAFGI 828

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++  +   I I KNLRIC DCH   KL+S +  RE ++RD +RFH FK G+CSCMD+W
Sbjct: 829 MSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 219/464 (47%), Gaps = 55/464 (11%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE------- 168
           L SC   S+      +H  +I  GL   +F++N L+H Y   G +++A  +         
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 169 --------------GSLA-----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
                         GSL+           RD+ S+NT+++GY Q  +   AL +F  M+ 
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 204 SCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG-----SNMLLKTAVINMY 257
           +    P+AFTF  +  +C  L        +H V  + LG +       +  ++TA+++M 
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALG-------WHEVALQLLGLLSKFDSQDDPDVQTALVDML 204

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            +CG M+ A + FS +  + +    +SM+ GY +   ++ A ++F  M +RD+VSW  +I
Sbjct: 205 VRCGAMDFASKQFSRIK-NPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVI 263

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           S  S+ G   +AL++   M   G+ PD  T  + L AC  L +L++GK+LH Q I N+  
Sbjct: 264 SALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPH 323

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + ++ +A++++YAKCG    A  VF  + ++  +VS +  +I G  Q+G    S+ +F
Sbjct: 324 -IDPYVASAMVELYAKCGCFKEAKRVFSSL-RDRNSVS-WTVLIGGFLQYGCFSESVELF 380

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497
            +M    +  D     T++  C +   +  G Q     L  G    +     ++ + A+ 
Sbjct: 381 NQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKC 440

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           G L  A  LI +   + + V W  ++ A      +++G IA  +
Sbjct: 441 GNLQNAE-LIFNFMAERDIVSWTGMITA-----YSQVGNIAKAR 478



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/532 (24%), Positives = 241/532 (45%), Gaps = 49/532 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNT+M GY +S     AL ++ SM   G   PN FTF  V+ SC  L 
Sbjct: 114 LFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALG 173

Query: 124 SFKSGCQIHCHIIKFGLE---------FDLFIRNALIHFYS-----------------IF 157
             +   Q+   + KF  +          D+ +R   + F S                 + 
Sbjct: 174 WHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLV 233

Query: 158 GY-----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
           GY     +++A ++F+    RD+VS+N +I+  ++      AL +   M    ++PD+ T
Sbjct: 234 GYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTT 293

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +  +AC  L+    GKQ H  V +NL  +  +  + +A++ +YAKCG    A+RVFS+
Sbjct: 294 YTSSLTACARLSSLEWGKQLHVQVIRNLPHI--DPYVASAMVELYAKCGCFKEAKRVFSS 351

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQ 328
           +   +++ +W+ +I G+ + G    + +LF+QM       D  +   +ISG       + 
Sbjct: 352 L-RDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCN----TM 406

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
            + L  ++ SL +       V V  + + + A   G   + + I N +  R+I   T +I
Sbjct: 407 DICLGSQLHSLCLKSGHTRAVVVSNSLISMYA-KCGNLQNAELIFNFMAERDIVSWTGMI 465

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKP 447
             Y++ G+I  A   F  +  + + V  +N+++    QHG  E  + ++ +M     + P
Sbjct: 466 TAYSQVGNIAKAREFFDDM--STRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIP 523

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           D VT+VT+   C+  G  + G Q     +  G+         ++ + ++ GR+ EA    
Sbjct: 524 DWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAF 583

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAHYVLLS 557
             +    + V W A++     H   K        +L+   +PD+ ++  +LS
Sbjct: 584 DFLSR-KDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLS 634


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 402/736 (54%), Gaps = 74/736 (10%)

Query: 17  SCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           S KS  QA Q+H Q++    +   + S L+S ++     N L  S  LF+ I  P    W
Sbjct: 18  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHI---NLLHDSLRLFNTIHFPPALAW 74

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +++R Y+    P ++L  +  ML+ G+  P++  FP VL SCA L     G  +H +II
Sbjct: 75  KSVIRCYTSHGLPHQSLGSFIGMLASGLY-PDHNVFPSVLKSCALLMDLNLGESLHGYII 133

Query: 137 KFGLEFDLFIRNALIHFYSIFGYI--------------------------------NNAH 164
           + GL+FDL+  NAL++ YS   ++                                ++  
Sbjct: 134 RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVR 193

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           K+FE    +DLVS+NT+I G A+       L + R+M  + ++PD+FT  ++     E  
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENV 253

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           D   GK+ H    +    + +++ + +++I+MYAKC                        
Sbjct: 254 DISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCT----------------------- 288

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                    ++  + ++F  + +RD +SW ++I+G  Q G F + L  F +M    I P 
Sbjct: 289 ---------RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPK 339

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
             +  +++ AC  L  L  GK+LH  YI    F  NIF+ ++++DMYAKCG+I TA  +F
Sbjct: 340 SYSFSSIMPACAHLTTLHLGKQLHG-YITRNGFDENIFIASSLVDMYAKCGNIRTAKQIF 398

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++   L+ +  + ++I G A HG    +I +F +ME  G+KP+ V F+ VL ACSHGGL
Sbjct: 399 DRM--RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGL 456

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+E  ++F SM  ++GI P +EHY  + DLL R GRL+EAY  I  M       IW  LL
Sbjct: 457 VDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLL 516

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
           +ACR+H N  + E    ++L+++P++   Y+LL+N+ +   RW+EA + R  M   GI+K
Sbjct: 517 SACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRK 576

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            P  S+IE    ++ F+A  +SHP  ++I   ++ +   ++  GYVP+T +V  DV+EE+
Sbjct: 577 TPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQ 636

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           K+ +V  HSE+LA+ FG+IN+ +  TIR+TKNLR+C DCH A K +S+I  REI+VRD  
Sbjct: 637 KKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNS 696

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G CSC D+W
Sbjct: 697 RFHHFKNGTCSCGDYW 712



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 163/337 (48%), Gaps = 9/337 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+L L+     + +  +IHG  +  GL+  I  +S LI  +A   C       R+ F+ 
Sbjct: 243 SSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA--KCTRVADSCRV-FTL 299

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   WN+++ G  ++    E L  +  ML   I  P +++F  ++ +CA L++   
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI-KPKSYSFSSIMPACAHLTTLHL 358

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H +I + G + ++FI ++L+  Y+  G I  A ++F+    RD+VS+  +I G A 
Sbjct: 359 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCAL 418

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   A+ LF +M+   I+P+   F+A+ +AC+         ++   + ++ G +   +
Sbjct: 419 HGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFG-IAPGV 477

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---Q 304
               AV ++  + G +  A      M +  + + W++++S       I+ A ++ +   +
Sbjct: 478 EHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILE 537

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +D  +  ++  + + YS    + +A +    M  +GI
Sbjct: 538 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGI 574


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/623 (37%), Positives = 352/623 (56%), Gaps = 44/623 (7%)

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           +I   L  D  +   L+  YS  G  + A  +F+ SL +++V +N +I  Y        A
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L +F+ M      PD +TF  +  AC+ L++ R+G Q H  + K +G + +N+ +  A++
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VG-LDTNLFIGNALV 179

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ-------------- 300
            MY KCG +  A +V   M   +   +W+SM++GY + G+ + A +              
Sbjct: 180 AMYGKCGCLREARKVLDQMPY-RDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA 238

Query: 301 -----------------------LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                                  +F++M +++L+SW  MI+ Y      ++A+ LF +ME
Sbjct: 239 GTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQME 298

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
             G+ PD VT+ ++L AC  L AL  G+RLH+ YIE      N+ L  A++DMYAKCG +
Sbjct: 299 ECGMKPDAVTIASLLPACGDLSALFLGRRLHK-YIEKGNLRPNLLLENALLDMYAKCGCL 357

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF K+   L+ V  + S++S   + G G  ++A+F +M   G  PD + FV+VL 
Sbjct: 358 EEARDVFDKM--RLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLS 415

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH GL+++G+ +F  M   YGI P++EH+ CMVDL  R G ++EAY  I+ MP + N 
Sbjct: 416 ACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNE 475

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            +W ALL+ACR+H    IG +A   L  L P    +YVLLSN+ A+   W++   VR  M
Sbjct: 476 RVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAM 535

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
              GI+K PG S +E NG +H FLA  + HPQ K I   L  +  K+K  GY+P T   +
Sbjct: 536 KKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESAL 595

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            DV+ E+KE  ++ HSEKLA+ F ++N++    IRITKNLR+CGDCH+A KL+S+I  R 
Sbjct: 596 HDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRN 655

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD  RFH F  G CSC D+W
Sbjct: 656 IIVRDCNRFHHFSNGICSCGDYW 678



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 209/446 (46%), Gaps = 44/446 (9%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGL 58
           +K  V    +   +L+    +K   ++H +IV   +N H  I  +  I        +   
Sbjct: 31  LKVEVFSKEACEVILDQYPGIKTLNKLHSKIV---INEHLRIDPTLAIKLMRAYSAQGET 87

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +R +F +    N+  +N ++R Y  ++   EAL ++  MLS    +P+++TFP VL +
Sbjct: 88  SVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAF-NPDHYTFPCVLKA 146

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           C+ L + + G Q+H  I+K GL+ +LFI NAL+  Y   G +  A KV +    RD+VS+
Sbjct: 147 CSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSW 206

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC--TELNDPR-IGKQFHAV 235
           N+++ GYAQ  +   AL + ++M    +  DA T  ++      T L + + I   F  +
Sbjct: 207 NSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM 266

Query: 236 VYKNLGCVGSNMLLKTAVIN-----------MYAKCGLMNMAERVFSTMGMSKSTAAW-- 282
             KNL  +  N+++   V N              +CG+   A  + S +      +A   
Sbjct: 267 TKKNL--ISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFL 324

Query: 283 --------------------SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                               ++++  Y + G +E AR +FD+M  RD+VSWT+M+S Y +
Sbjct: 325 GRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGR 384

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G    A+ LF KM   G +PD +  V+VL AC   G LD G+   +   E       I 
Sbjct: 385 SGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIE 444

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIP 408
               ++D++ + G ++ A S   ++P
Sbjct: 445 HFACMVDLFGRAGEVEEAYSFIKQMP 470



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 156/342 (45%), Gaps = 5/342 (1%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           R V+  +S++A          AL+I  ++    LNH   +   +S          +    
Sbjct: 201 RDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIH 260

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F ++   N+  WN ++  Y  +  P EA+ L+  M   G+  P+  T   +L +C  L
Sbjct: 261 NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGM-KPDAVTIASLLPACGDL 319

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S+   G ++H +I K  L  +L + NAL+  Y+  G +  A  VF+    RD+VS+ +++
Sbjct: 320 SALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMM 379

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y +  +   A+ LF KM DS   PD+  FV++ SAC+       G+ +  ++ +  G 
Sbjct: 380 SAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGI 439

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RAR 299
           V   +     +++++ + G +  A      M M  +   W +++S      K++    A 
Sbjct: 440 V-PRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAA 498

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            L  Q+  +    +  + + Y++ G +   + +   M+ +GI
Sbjct: 499 DLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/662 (35%), Positives = 387/662 (58%), Gaps = 45/662 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++ + N+  W  ++  + +    ++A+ L+  M+  G V P+ FT   V+++CA + 
Sbjct: 101 VFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYV-PDRFTLSGVVSACAEMG 159

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGYINNAHKVFEGSLARDLVSYNT 180
               G Q HC ++K GL+ D+ +  +L+  Y+     G +++A KVF+     +++S+  
Sbjct: 160 LLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTA 219

Query: 181 LINGYAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           +I GY Q    C   A+ LF +M    ++P+ FTF ++  AC  L+D  +G+Q +A+V K
Sbjct: 220 IITGYVQ-SGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK 278

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                     ++ A IN                           +S+IS Y+R G +E A
Sbjct: 279 ----------MRLASINCVG------------------------NSLISMYSRCGNMENA 304

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R+ FD + +++LVS+  +++ Y++     +A ELF ++E  G   +  T  ++L     +
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GA+  G+++H + +++  F  N+ +  A+I MY++CG+I+ A  VF ++      V  + 
Sbjct: 365 GAIGKGEQIHSRILKSG-FKSNLHICNALISMYSRCGNIEAAFQVFNEMGDG--NVISWT 421

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
           S+I+G A+HG    ++  F +M   G+ P+ VT++ VL ACSH GL+ EG + F+SM + 
Sbjct: 422 SMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVE 481

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI P+MEHY C+VDLL R G L+EA  L+ SMP+ A++++ R  L ACR+H N  +G+ 
Sbjct: 482 HGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKH 541

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A + +L+ +P   A Y+LLSN+ A   +WEE  ++RK M +  + K  G S+IE    +H
Sbjct: 542 AAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVH 601

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
           +F     SHPQ +EI   L  + +K+K  GY+P+T  V+ DV+EE+KE  +  HSEK+A+
Sbjct: 602 KFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAV 661

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           A+G I++ +   IR+ KNLR+CGDCH AFK  S + R+EI++RDA RFH FK G CSC D
Sbjct: 662 AYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCND 721

Query: 718 FW 719
           +W
Sbjct: 722 YW 723



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 176/325 (54%), Gaps = 11/325 (3%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q H  ++ SGL+  +     L+  +A       +  +R +F ++   N+  W  ++ GY 
Sbjct: 166 QFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYV 225

Query: 85  RSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           +S    +EA+ L+  M+ +G V PN+FTF  VL +CA LS    G Q++  ++K  L   
Sbjct: 226 QSGGCDREAIELFLEMV-QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASI 284

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
             + N+LI  YS  G + NA K F+    ++LVSYNT++N YA+      A  LF +++ 
Sbjct: 285 NCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEG 344

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           +    +AFTF ++ S  + +     G+Q H+ + K+     SN+ +  A+I+MY++CG +
Sbjct: 345 AGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS--GFKSNLHICNALISMYSRCGNI 402

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISG 319
             A +VF+ MG   +  +W+SMI+G+ + G   RA + F +M +  +    V++ A++S 
Sbjct: 403 EAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSA 461

Query: 320 YSQVGGFSQALELFGKME-SLGIHP 343
            S VG  S+ L+ F  M+   GI P
Sbjct: 462 CSHVGLISEGLKHFKSMKVEHGIVP 486



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 167/339 (49%), Gaps = 47/339 (13%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RDLVS++ LI+ YA  ++   A+  F  M +    P+ + F  +F AC+   +  +GK  
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
              + K  G   S++ +  A+I+M+ K                                 
Sbjct: 65  FGFLLKT-GYFESDVCVGCALIDMFVK-------------------------------GN 92

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +E A ++FD+M  R++V+WT MI+ + Q+G    A++LF  M   G  PD  T+  V+
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC---GSIDTALSVFYKIPK 409
            AC  +G L  G++ H   +++ +   ++ +  +++DMYAKC   GS+D A  VF ++P 
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGL-DLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP- 210

Query: 410 NLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
            +  V  + +II+G  Q  G    +I +F EM    +KP+  TF +VL AC++   +  G
Sbjct: 211 -VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLG 269

Query: 469 KQFFESMLNYGIKPQMEHYGC----MVDLLARDGRLDEA 503
           +Q +  +    +K ++    C    ++ + +R G ++ A
Sbjct: 270 EQVYALV----VKMRLASINCVGNSLISMYSRCGNMENA 304



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 21/231 (9%)

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC-----VGLGA 360
           ++RDLVSW+A+IS Y+      +A+  F  M   G +P+E     V RAC     + LG 
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDTALSVFYKIP-KNLKTVSLFN 418
           + FG  L   Y E+     ++ +  A+IDM+ K  G +++A  VF ++P +N+ T +L  
Sbjct: 63  IIFGFLLKTGYFES-----DVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTL-- 115

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
            +I+   Q G    ++ +F +M L G  PD  T   V+ AC+  GL+  G+QF   ++  
Sbjct: 116 -MITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKS 174

Query: 479 GIKPQMEHYGC-MVDLLAR---DGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G+   +   GC +VD+ A+   DG +D+A  +   MP   N + W A++  
Sbjct: 175 GLDLDV-CVGCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITG 223


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/709 (33%), Positives = 398/709 (56%), Gaps = 56/709 (7%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           Q+H   +  G    ++S  + +  A+ G    L  S++L    +  ++  WNT++    +
Sbjct: 219 QVHAYGLRKG---ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQ 275

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEFDL 144
           ++   EAL     M+ +G V P+ FT   VL +C+ L   ++G ++H + +K G L+ + 
Sbjct: 276 NEQFLEALEYLREMVLEG-VEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ +AL+  Y     + +  +VF+G   R +  +N +I GYAQ +    AL LF +M++S
Sbjct: 335 FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEES 394

Query: 205 C-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
             +  ++ T   +  AC         +  H  V K                         
Sbjct: 395 AGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKR------------------------ 430

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                     G+ +     ++++  Y+R GKI+ A+++F +M+ RDLV+W  +I+GY   
Sbjct: 431 ----------GLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFS 480

Query: 324 GGFSQALELFGKMESL-----------GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                AL +  KM+ L            + P+ +T++ +L +C  L AL  GK +H   I
Sbjct: 481 ERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 540

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +N +   ++ + +A++DMYAKCG +  +  VF +IP  ++ V  +N I+     HG  + 
Sbjct: 541 KNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIP--IRNVITWNVIVMAYGMHGNSQD 597

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMV 491
           +I + R M + G+KP+ VTF++V  ACSH G+V EG + F +M  +YG++P  +HY C+V
Sbjct: 598 AIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVV 657

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           DLL R GR+ EAY LI  +P + +    W +LL ACR+H N +IGEIA Q L+ LEP+  
Sbjct: 658 DLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVA 717

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
           +HYVLL+N+ +    W +A +VR+ M   G++K PG S+IEH   +H+F+A   SHPQ++
Sbjct: 718 SHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSE 777

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           ++   L+ +  +++  GY+P+T  V+ +V+E+EKE ++  HSEKLA+AFG++N+     I
Sbjct: 778 KLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTII 837

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+ KNLR+C DCHLA K +S++  REI++RD  RFH FK G CSC D+W
Sbjct: 838 RVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 216/455 (47%), Gaps = 44/455 (9%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W  L+R   RS+  +EA++ Y  M+  GI  P+NF FP +L + A L     G QIH H+
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGI-KPDNFAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 136 IKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            KFG   D + + N L++ Y   G     +KVF+    R+ VS+N+LI+     ++   A
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVYKNLGCVGSNMLLKT 251
           L  FR M D  ++P +FT V++  AC+    P    +GKQ HA   +     G    L +
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRK----GE---LNS 232

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
            +IN                            ++++ Y + GK+  ++ L    + RDLV
Sbjct: 233 FIIN----------------------------TLVAMYGKMGKLASSKVLLGSFEGRDLV 264

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           +W  ++S   Q   F +ALE   +M   G+ PD  T+ +VL AC  L  L  GK LH   
Sbjct: 265 TWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYA 324

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           ++N     N F+ +A++DMY  C  + +   VF  +    + + L+N++I+G AQ+   E
Sbjct: 325 LKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFD--RKIGLWNAMITGYAQNEYDE 382

Query: 432 TSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490
            ++ +F EM E  GL  +  T   V+ AC   G   + +     ++  G+         +
Sbjct: 383 EALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNAL 442

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +D+ +R G++D A  +   M  D + V W  ++  
Sbjct: 443 MDMYSRLGKIDIAKRIFGKME-DRDLVTWNTIITG 476



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 144/346 (41%), Gaps = 54/346 (15%)

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           I+PD F F A+  A  +L D  +GKQ HA VYK  G    ++ +   ++N+Y KCG    
Sbjct: 89  IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYK-FGYGVDSVTVANTLVNLYRKCGDFGA 147

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
             +VF                                D++ +R+ VSW ++IS       
Sbjct: 148 VYKVF--------------------------------DRISERNQVSWNSLISSLCSFEK 175

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLG---ALDFGKRLHQQYIENVVFGRNIF 382
           +  ALE F  M    + P   T+V+V  AC        L  GK++H   +       N F
Sbjct: 176 WEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL--NSF 233

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +   ++ MY K G + ++  +        + +  +N+++S L Q+     ++   REM L
Sbjct: 234 IINTLVAMYGKMGKLASSKVLLGSFEG--RDLVTWNTVLSSLCQNEQFLEALEYLREMVL 291

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG-CMVDLLAR----- 496
            G++PDG T  +VL ACSH  ++  GK+     L  G   +    G  +VD+        
Sbjct: 292 EGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 351

Query: 497 ------DGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKI 534
                 DG  D   GL  +M   Y  N     ALL    +  +A +
Sbjct: 352 SGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGL 397



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 9/241 (3%)

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W  ++    +     +A+  +  M  LGI PD     A+L+A   L  +D GK++H    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +      ++ +   ++++Y KCG       VF +I +    VS +NS+IS L      E 
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER-NQVS-WNSLISSLCSFEKWEM 178

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHY--GC 489
           ++  FR M    ++P   T V+V  ACS+  +  EG    + +  YG+ K ++  +    
Sbjct: 179 ALEAFRCMLDEDVEPSSFTLVSVALACSNFPM-PEGLLMGKQVHAYGLRKGELNSFIINT 237

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA-CRLHRNAKIGEIAGQKLLD-LEP 547
           +V +  + G+L  +  L+ S     + V W  +L++ C+  +  +  E   + +L+ +EP
Sbjct: 238 LVAMYGKMGKLASSKVLLGSFE-GRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296

Query: 548 D 548
           D
Sbjct: 297 D 297


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/622 (40%), Positives = 368/622 (59%), Gaps = 18/622 (2%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           PN  TF  +LN   +LS  +   QIH  ++   L  +  +  +LIH Y       NA  +
Sbjct: 72  PNPQTFSLLLNQRPKLSPLQ---QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARIL 128

Query: 167 FE--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ--DSCIQ--PDAFTFVAMFSAC 220
           F+   S +  +  +N +I  Y++++     + LF +M   D  +Q  PD +TF  + ++C
Sbjct: 129 FDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSC 188

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
           +       G+  H +V K+     SN+ +  +VINM +    M  A +VF+ M   +   
Sbjct: 189 SHQISLIYGEIVHGMVVKS--GFESNLYVGNSVINMCSVFARMEDARKVFNQMS-ERDVF 245

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           +W+S++ GY + G+++RA +LF+ M  R+ VSW  MISG+   G + +AL  F  M    
Sbjct: 246 SWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDD 305

Query: 341 -IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
            ++P+E  +V VL AC  LGALD G  +H  YI+ +   ++  ++TA+IDMYAKCG ID 
Sbjct: 306 RVNPNEAVLVCVLSACAHLGALDQGNWIHL-YIDKIGIRQSSNISTALIDMYAKCGRIDC 364

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A  VF  I K  + V  F S+ISGL+ HGLG+ ++ VF +M    + P+ +T + VL  C
Sbjct: 365 ASRVFNGICK--RDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGC 422

Query: 460 SHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLVEEG     +M + +GI P++EHYGC +DLL R G L+ A  ++++MP + + VI
Sbjct: 423 SHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVI 482

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           WRALL+A R+H N  +GE     +  L+  DH    VLLSN+ A   RWE   ++RKLM 
Sbjct: 483 WRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMV 542

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D   +  PG S+IE NG +H F  + + HPQ  EI   L ++  +L   GY  NT+QV F
Sbjct: 543 DRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSF 602

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           D++EEEKE  V++HSEKLA+AFGL+++     IRI KNLR C DCH A K +S++Y REI
Sbjct: 603 DLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREI 662

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD  RFH F +G+CSC DFW
Sbjct: 663 VVRDRSRFHTFIEGDCSCKDFW 684



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 177/373 (47%), Gaps = 49/373 (13%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           LL     L    QIH Q+V   L+ + S ++ LI  +    C      +RILF    +P+
Sbjct: 80  LLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYL---CAKNHPNARILFDHYPSPS 136

Query: 73  --IFIWNTLMRGYSRSDSPQEALVLYTSMLS---KGIVSPNNFTFPFVLNSCARLSSFKS 127
             I +WN ++R YS+  + QE + L+  ML+      V P+ +TF FV+ SC+   S   
Sbjct: 137 PPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIY 196

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++K G E +L++ N++I+  S+F  + +A KVF     RD+ S+ +L+ GYA+
Sbjct: 197 GEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAK 256

Query: 188 VKEPCPALWLFRKMQ--------------------------------DSCIQPDAFTFVA 215
             E   A  LF  M                                 D  + P+    V 
Sbjct: 257 HGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVC 316

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + SAC  L     G   H  + K +G   S+  + TA+I+MYAKCG ++ A RVF+ +  
Sbjct: 317 VLSACAHLGALDQGNWIHLYIDK-IGIRQSSN-ISTALIDMYAKCGRIDCASRVFNGI-C 373

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGFSQALE 331
            +   +++SMISG +  G  + A ++F QM   ++    ++   +++G S  G   +   
Sbjct: 374 KRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSS 433

Query: 332 LFGKMESL-GIHP 343
           +   MESL GI P
Sbjct: 434 ILANMESLWGIAP 446



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 42/316 (13%)

Query: 27  IHGQIVHSGL--NHHISSS--QLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
           +HG +V SG   N ++ +S   + S FA       +  +R +F+Q+   ++F W +L+ G
Sbjct: 200 VHGMVVKSGFESNLYVGNSVINMCSVFA------RMEDARKVFNQMSERDVFSWTSLLGG 253

Query: 83  YS-----------------RSDSP--------------QEALVLYTSMLSKGIVSPNNFT 111
           Y+                 R+D                 EAL  + +ML    V+PN   
Sbjct: 254 YAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAV 313

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
              VL++CA L +   G  IH +I K G+     I  ALI  Y+  G I+ A +VF G  
Sbjct: 314 LVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGIC 373

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            RD++S+ ++I+G +       AL +F +M D  + P+  T + + + C+       G  
Sbjct: 374 KRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSS 433

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
             A + ++L  +   +      I++  + G +  A  V  TM M      W +++S    
Sbjct: 434 ILANM-ESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRI 492

Query: 292 EGKIERARQLFDQMDQ 307
              +    Q+   + Q
Sbjct: 493 HHNVNLGEQIISHIGQ 508


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/623 (37%), Positives = 352/623 (56%), Gaps = 44/623 (7%)

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           +I   L  D  +   L+  YS  G  + A  +F+ SL +++V +N +I  Y        A
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L +F+ M      PD +TF  +  AC+ L++ R+G Q H  + K +G + +N+ +  A++
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VG-LDTNLFIGNALV 179

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ-------------- 300
            MY KCG +  A +V   M   +   +W+SM++GY + G+ + A +              
Sbjct: 180 AMYGKCGCLREARKVLDQMPY-RDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA 238

Query: 301 -----------------------LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                                  +F++M +++L+SW  MI+ Y      ++A+ LF +ME
Sbjct: 239 GTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQME 298

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
             G+ PD VT+ ++L AC  L AL  G+RLH+ YIE      N+ L  A++DMYAKCG +
Sbjct: 299 ECGMKPDAVTIASLLPACGDLSALFLGRRLHK-YIEKGNLQPNLLLENALLDMYAKCGCL 357

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF K+   L+ V  + S++S   + G G  ++A+F +M   G  PD + FV+VL 
Sbjct: 358 EEARDVFDKM--RLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLS 415

Query: 458 ACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH GL+++G+ +F  M   YGI P++EH+ CMVDL  R G ++EAY  I+ MP + N 
Sbjct: 416 ACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNE 475

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            +W ALL+ACR+H    IG +A   L  L P    +YVLLSN+ A+   W++   VR  M
Sbjct: 476 RVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAM 535

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
              GI+K PG S +E NG +H FLA  + HPQ K I   L  +  K+K  GY+P T   +
Sbjct: 536 KKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESAL 595

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            DV+ E+KE  ++ HSEKLA+ F ++N++    IRITKNLR+CGDCH+A KL+S+I  R 
Sbjct: 596 HDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRN 655

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD  RFH F  G CSC D+W
Sbjct: 656 IIVRDCNRFHHFSNGICSCGDYW 678



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 209/446 (46%), Gaps = 44/446 (9%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGL 58
           +K  V    +   +L+    +K   ++H +IV   +N H  I  +  I        +   
Sbjct: 31  LKVEVFSKEACEVILDQYPGIKTLNKLHSKIV---INEHLRIDPTLAIKLMRAYSAQGET 87

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +R +F +    N+  +N ++R Y  ++   EAL ++  MLS    +P+++TFP VL +
Sbjct: 88  SVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAF-NPDHYTFPCVLKA 146

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           C+ L + + G Q+H  I+K GL+ +LFI NAL+  Y   G +  A KV +    RD+VS+
Sbjct: 147 CSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSW 206

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC--TELNDPR-IGKQFHAV 235
           N+++ GYAQ  +   AL + ++M    +  DA T  ++      T L + + I   F  +
Sbjct: 207 NSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM 266

Query: 236 VYKNLGCVGSNMLLKTAVIN-----------MYAKCGLMNMAERVFSTMGMSKSTAAW-- 282
             KNL  +  N+++   V N              +CG+   A  + S +      +A   
Sbjct: 267 TKKNL--ISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFL 324

Query: 283 --------------------SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                               ++++  Y + G +E AR +FD+M  RD+VSWT+M+S Y +
Sbjct: 325 GRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGR 384

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G    A+ LF KM   G +PD +  V+VL AC   G LD G+   +   E       I 
Sbjct: 385 SGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIE 444

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIP 408
               ++D++ + G ++ A S   ++P
Sbjct: 445 HFACMVDLFGRAGEVEEAYSFIKQMP 470



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 157/342 (45%), Gaps = 5/342 (1%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           R V+  +S++A          AL+I  ++    LNH   +   +S          +    
Sbjct: 201 RDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIH 260

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F ++   N+  WN ++  Y  +  P EA+ L+  M   G+  P+  T   +L +C  L
Sbjct: 261 NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGM-KPDAVTIASLLPACGDL 319

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S+   G ++H +I K  L+ +L + NAL+  Y+  G +  A  VF+    RD+VS+ +++
Sbjct: 320 SALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMM 379

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y +  +   A+ LF KM DS   PD+  FV++ SAC+       G+ +  ++ +  G 
Sbjct: 380 SAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGI 439

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RAR 299
           V   +     +++++ + G +  A      M M  +   W +++S      K++    A 
Sbjct: 440 V-PRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAA 498

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            L  Q+  +    +  + + Y++ G +   + +   M+ +GI
Sbjct: 499 DLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/696 (35%), Positives = 390/696 (56%), Gaps = 59/696 (8%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ-IHCH 134
           +N ++  YS  +    AL L+  M   G + P+ FTF  VL++ + ++  +  CQ +HC 
Sbjct: 107 YNAMITAYSHGNDGHAALNLFVQMKRYGFL-PDPFTFSSVLSALSLIADEERHCQMLHCE 165

Query: 135 IIKFGLEFDLFIRNALIHFYS-------------------------------------IF 157
           +IK G      + NAL+  Y                                      I 
Sbjct: 166 VIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIA 225

Query: 158 GYINN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
           GY+ N     A ++ +G      V++N +I+GY +      A   FR+M    IQ D +T
Sbjct: 226 GYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYT 285

Query: 213 FVAMFSACTELNDP----RIGKQFHAVVYKNLGCVGSNMLL--KTAVINMYAKCGLMNMA 266
           + ++ SAC   N+       G+Q H  + + +     + +L    A+I  Y K   M  A
Sbjct: 286 YTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEA 345

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
            RVF  M + +   +W++++SGY    +IE A  +F +M +R++++WT MISG +Q G  
Sbjct: 346 RRVFDKMPV-RDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFG 404

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT- 385
            + L+LF +M+S G+ P +      + AC  LG+LD G+++H Q I     G +  L+  
Sbjct: 405 EEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIR---LGHDSGLSAG 461

Query: 386 -AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A+I MY++CG +++A SVF  +P  + +VS +N++I+ LAQHG G  +I +F +M    
Sbjct: 462 NALITMYSRCGVVESAESVFLTMPY-VDSVS-WNAMIAALAQHGHGVKAIELFEQMMKED 519

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
           + PD +TF+T+L AC+H GL++EG+ +F++M   YGI P  +HY  ++DLL R G   +A
Sbjct: 520 ILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKA 579

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
             +I+SMP++A + IW ALLA CR+H N ++G  A  +LL+L P     Y++LSNM A  
Sbjct: 580 QSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAAL 639

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            +W+E  +VR LM + G++K PG S++E    +H FL     HP+ + +   L+ +  ++
Sbjct: 640 GQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEM 699

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
           K  GYVP+T  V+ D++ E KE  +S HSEKLA+ +G++      TIR+ KNLRICGDCH
Sbjct: 700 KKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCH 759

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            AFK +S++  REI+VRD  RFH FK G CSC ++W
Sbjct: 760 NAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 236/512 (46%), Gaps = 67/512 (13%)

Query: 92  ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151
           A  ++  +L+ G   PN F    ++N   + S+     ++   I K     D+  R  L+
Sbjct: 24  ARAVHAHILTSGF-KPNTFILNRLINIYCKSSNITYARKLFDKIPKP----DIVARTTLL 78

Query: 152 HFYSIFGYINNAHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
             YS  G +  A ++F  +    RD VSYN +I  Y+   +   AL LF +M+     PD
Sbjct: 79  SAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPD 138

Query: 210 AFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNML--LKTAVINMYAKCG----- 261
            FTF ++ SA + + D  R  +  H  V K    +G+ ++  +  A+++ Y  C      
Sbjct: 139 PFTFSSVLSALSLIADEERHCQMLHCEVIK----LGTLLIPSVTNALLSCYVCCASSPLV 194

Query: 262 ----LMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
               LM  A +VF     ++    +W++MI+GY R   +  AR+L D +     V+W AM
Sbjct: 195 KSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAM 254

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQYI 372
           ISGY + G + +A + F +M S+GI  DE T  +++ AC      +G  + G+++H   +
Sbjct: 255 ISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYIL 314

Query: 373 ENVVFG----------------------------------RNIFLTTAVIDMYAKCGSID 398
             VV                                    R+I    AV+  Y     I+
Sbjct: 315 RTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIE 374

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A S+F ++P+  + V  +  +ISGLAQ+G GE  + +F +M+  GL+P    F   + A
Sbjct: 375 EANSIFSEMPE--RNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           CS  G ++ G+Q    ++  G    +     ++ + +R G ++ A  +  +MPY  +SV 
Sbjct: 433 CSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVS 491

Query: 519 WRALLAACRLH-RNAKIGEIAGQKLL-DLEPD 548
           W A++AA   H    K  E+  Q +  D+ PD
Sbjct: 492 WNAMIAALAQHGHGVKAIELFEQMMKEDILPD 523



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 189/431 (43%), Gaps = 80/431 (18%)

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
            + L  +R L   +  P    WN ++ GY R    +EA   +  M S GI   + +T+  
Sbjct: 230 NDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGI-QEDEYTYTS 288

Query: 115 VLNSCA----RLSSFKSGCQIHCHIIKFGLE----FDLFIRNALIHFYSIFGYINNAHKV 166
           ++++C     ++  F  G Q+H +I++  +E    F L + NALI FY+ +  +  A +V
Sbjct: 289 LISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRV 348

Query: 167 FEGSLARDLVSYNTLINGY--AQVKEPCPALW---------------------------- 196
           F+    RD++S+N +++GY  AQ  E   +++                            
Sbjct: 349 FDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGL 408

Query: 197 -LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            LF +M+   ++P  + F    +AC+ L     G+Q H+ V + LG   S +    A+I 
Sbjct: 409 KLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIR-LGH-DSGLSAGNALIT 466

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MY++CG++  AE VF TM    S  +W++MI+   + G   +A +LF+QM + D++    
Sbjct: 467 MYSRCGVVESAESVFLTMPYVDSV-SWNAMIAALAQHGHGVKAIELFEQMMKEDIL---- 521

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE-- 373
                                      PD +T + +L AC   G +  G+          
Sbjct: 522 ---------------------------PDRITFLTILTACNHAGLIKEGRHYFDTMCTRY 554

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
            +  G + +    +ID+  + G    A SV   +P       ++ ++++G   HG  E  
Sbjct: 555 GITPGEDHY--ARLIDLLCRAGMFLKAQSVIKSMPFE-AGAPIWEALLAGCRIHGNMELG 611

Query: 434 I-AVFREMELM 443
           I A  R +EL+
Sbjct: 612 IQAADRLLELI 622



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 7/265 (2%)

Query: 45  LISFFA-LSGCKNG--LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           +IS+ A LSG  N   +  +  +FS++   N+  W  ++ G +++   +E L L+  M S
Sbjct: 357 IISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKS 416

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           +G+  P ++ F   + +C+ L S  +G QIH  +I+ G +  L   NALI  YS  G + 
Sbjct: 417 EGL-EPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVE 475

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +A  VF      D VS+N +I   AQ      A+ LF +M    I PD  TF+ + +AC 
Sbjct: 476 SAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 222 ELNDPRIGKQFHAVVYKNLGCV-GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
                + G+ +   +    G   G +   +  +I++  + G+   A+ V  +M       
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYAR--LIDLLCRAGMFLKAQSVIKSMPFEAGAP 593

Query: 281 AWSSMISGYTREGKIERARQLFDQM 305
            W ++++G    G +E   Q  D++
Sbjct: 594 IWEALLAGCRIHGNMELGIQAADRL 618


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/562 (41%), Positives = 350/562 (62%), Gaps = 43/562 (7%)

Query: 163 AHKVFEG-SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSAC 220
           AHKVF       ++  +NTLI GYA++     A+ L+R+M+ S  ++PD  T+  +  A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            ++ D R+G+  H+VV ++    GS + ++ +++++YA CG                   
Sbjct: 132 GKMADVRLGETIHSVVIRS--GFGSLIYVQNSLLHLYANCG------------------- 170

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
                         +  A ++FD+M ++DLV+W ++I+G+++ G   +AL L+ +M+  G
Sbjct: 171 -------------DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKG 217

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I PD  T+V++L AC  +GAL  GKR H  Y+  V   RN+  +  ++D+YA+CG ++ A
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRFHV-YMIKVGLTRNLHSSNVLLDLYARCGRVEEA 276

Query: 401 LSVFYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTVLCA 458
            ++F + + KN  +VS + S+I GLA +GLG+ +I +F+ ME   GL P  +TFV +L A
Sbjct: 277 KTLFDEMVDKN--SVS-WTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYA 333

Query: 459 CSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH G+V+EG ++F  M   Y I+P++EH+GCMVDLLAR G++ +AY  I  MP   N V
Sbjct: 334 CSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVV 393

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           IWR LL AC +H ++ + E+A  K+L LEP+H   YVLLSNM A   RW + +++RK M 
Sbjct: 394 IWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQML 453

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
             G++K PG S +E    +H FL   KSHPQ   I   LK+MT +L+  GYVP    V  
Sbjct: 454 RDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYV 513

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           DV+EEEKE  + YHSEK+A+AF LI++  +  IR+ KNL++C DCHLA KL+S++Y REI
Sbjct: 514 DVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREI 573

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD  RFH FK G+CSC D+W
Sbjct: 574 VVRDRSRFHHFKNGSCSCQDYW 595



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 234/452 (51%), Gaps = 52/452 (11%)

Query: 11  LLALLESC---------KSLKQALQIHGQIVHSGLNHHISSSQL---ISFFALS-GCKNG 57
           LL ++E C          SL +  QIH   + +G++  IS ++L   + F+ +S      
Sbjct: 11  LLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVS--ISDAELGKHLIFYLVSLPSPPP 68

Query: 58  LFRSRILFSQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           +  +  +FS+I+ P N+FIWNTL+RGY+   +   A+ LY  M + G V P+  T+PF+L
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +  +++  + G  IH  +I+ G    ++++N+L+H Y+  G + +A+KVF+    +DLV
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N++ING+A+  +P  AL L+ +M    I+PD FT V++ SAC ++    +GK+FH  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM 248

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K +G +  N+     ++++YA+CG +  A+ +F  M + K++ +W+S+I G    G  +
Sbjct: 249 IK-VG-LTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGLGK 305

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A +LF  M+ ++                              G+ P E+T V +L AC 
Sbjct: 306 EAIELFKNMESKE------------------------------GLLPCEITFVGILYACS 335

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             G +  G    ++  E       I     ++D+ A+ G +  A     K+P     V +
Sbjct: 336 HCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQ-PNVVI 394

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           + +++     H  G++ +A    M+++ L+P+
Sbjct: 395 WRTLLGACTVH--GDSDLAELARMKILQLEPN 424


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/721 (34%), Positives = 405/721 (56%), Gaps = 45/721 (6%)

Query: 4   LVLEHSSLLALLESCKSL---KQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           LV + ++++ ++ +C ++   +  + +HG     G+   ++ ++ L+  ++  G    L 
Sbjct: 295 LVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGY---LG 351

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R LF      N+  WNT++ GYS+    +    L   M  +  V  N  T   VL +C
Sbjct: 352 EARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPAC 411

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           +      S  +IH +  + G   D  + NA +  Y+    ++ A +VF G   + + S+N
Sbjct: 412 SGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWN 471

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            LI  +AQ   P  +L LF  M DS + PD FT  ++  AC  L   R GK+ H  + +N
Sbjct: 472 ALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRN 531

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +  +  +  +++++Y +C                      SSM+ G          +
Sbjct: 532 --GLELDEFIGISLMSLYIQC----------------------SSMLLG----------K 557

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +FD+M+ + LV W  MI+G+SQ     +AL+ F +M S GI P E+ +  VL AC  + 
Sbjct: 558 LIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVS 617

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL  GK +H  +        + F+T A+IDMYAKCG ++ + ++F ++  N K  +++N 
Sbjct: 618 ALRLGKEVHS-FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRV--NEKDEAVWNV 674

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           II+G   HG G  +I +F  M+  G +PD  TF+ VL AC+H GLV EG ++   M N Y
Sbjct: 675 IIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLY 734

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G+KP++EHY C+VD+L R G+L EA  L+  MP + +S IW +LL++CR + + +IGE  
Sbjct: 735 GVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEV 794

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +KLL+LEP+   +YVLLSN+ A   +W+E R+VR+ M ++G+ K  G S+IE  G ++R
Sbjct: 795 SKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYR 854

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           FL S  S  ++K+I+     +  K+   GY P+T  V+ +++EE K  ++  HSEKLA++
Sbjct: 855 FLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAIS 914

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGL+N+    T+R+ KNLRIC DCH A KL+S++ +R+I+VRD  RFH FK G C+C DF
Sbjct: 915 FGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDF 974

Query: 719 W 719
           W
Sbjct: 975 W 975



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 236/476 (49%), Gaps = 47/476 (9%)

Query: 14  LLESC---KSLKQALQIHGQIV--HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           LL +C   K++    ++H  +   H   N  + S+++I+ ++  G  +    SR +F   
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPS---DSRGVFDAA 154

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++F++N L+ GYSR+   ++A+ L+  +LS   ++P+NFT P V  +CA ++  + G
Sbjct: 155 KEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H   +K G   D F+ NALI  Y   G++ +A KVFE    R+LVS+N+++   ++ 
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSEN 274

Query: 189 KEPCPALWLFRKM---QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   +F+++   ++  + PD  T V +  AC  + + R+G   H + +K LG +  
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFK-LG-ITE 332

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            + +  ++++MY+KCG +  A  +F   G  K+  +W+++I GY++EG      +L  +M
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEARALFDMNG-GKNVVSWNTIIWGYSKEGDFRGVFELLQEM 391

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            + + V                                +EVT++ VL AC G   L   K
Sbjct: 392 QREEKV------------------------------RVNEVTVLNVLPACSGEHQLLSLK 421

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H  Y     F ++  +  A +  YAKC S+D A  VF  +    KTVS +N++I   A
Sbjct: 422 EIH-GYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEG--KTVSSWNALIGAHA 478

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           Q+G    S+ +F  M   G+ PD  T  ++L AC+    +  GK+    ML  G++
Sbjct: 479 QNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLE 534



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 240/512 (46%), Gaps = 54/512 (10%)

Query: 29  GQIVHS------GLNHHISSSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIWNTLMR 81
           G+ VH+      G +     + LI+ +     K G   S + +F  + N N+  WN++M 
Sbjct: 214 GEAVHALALKAGGFSDAFVGNALIAMYG----KCGFVESAVKVFETMRNRNLVSWNSVMY 269

Query: 82  GYSRSDSPQEALVLYTSML---SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
             S +    E   ++  +L    +G+V P+  T   V+ +CA +   + G  +H    K 
Sbjct: 270 ACSENGGFGECCGVFKRLLISEEEGLV-PDVATMVTVIPACAAVGEVRMGMVVHGLAFKL 328

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G+  ++ + N+L+  YS  GY+  A  +F+ +  +++VS+NT+I GY++  +      L 
Sbjct: 329 GITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELL 388

Query: 199 RKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           ++MQ +  ++ +  T + +  AC+  +     K+ H   +++ G +  + L+  A +  Y
Sbjct: 389 QEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRH-GFL-KDELVANAFVAAY 446

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
           AKC  ++ AERVF  M                  EGK               + SW A+I
Sbjct: 447 AKCSSLDCAERVFCGM------------------EGKT--------------VSSWNALI 474

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
             ++Q G   ++L+LF  M   G+ PD  T+ ++L AC  L  L  GK +H   + N + 
Sbjct: 475 GAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGL- 533

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F+  +++ +Y +C S+     +F K+    K++  +N +I+G +Q+ L   ++  F
Sbjct: 534 ELDEFIGISLMSLYIQCSSMLLGKLIFDKMEN--KSLVCWNVMITGFSQNELPCEALDTF 591

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497
           R+M   G+KP  +    VL ACS    +  GK+     L   +         ++D+ A+ 
Sbjct: 592 RQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKC 651

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           G ++++  +   +  + +  +W  ++A   +H
Sbjct: 652 GCMEQSQNIFDRVN-EKDEAVWNVIIAGYGIH 682



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 14/223 (6%)

Query: 324 GGFSQALELF------GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           G  + AL L       G + S  I  + + ++  LRAC     +  G+++H     +   
Sbjct: 67  GNLNDALNLLHSHAQNGTVSSSDISKEAIGIL--LRACGHHKNIHVGRKVHALVSASHKL 124

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++ L+T +I MY+ CGS   +  VF    +  K + L+N+++SG +++ L   +I++F
Sbjct: 125 RNDVVLSTRIIAMYSACGSPSDSRGVFDAAKE--KDLFLYNALLSGYSRNALFRDAISLF 182

Query: 438 RE-MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
            E +    L PD  T   V  AC+    VE G+      L  G          ++ +  +
Sbjct: 183 LELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGK 242

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
            G ++ A  + ++M  + N V W +++ AC    N   GE  G
Sbjct: 243 CGFVESAVKVFETM-RNRNLVSWNSVMYACS--ENGGFGECCG 282


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/597 (38%), Positives = 368/597 (61%), Gaps = 9/597 (1%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           +  + LL++LE CKSL Q  QI  Q+V +GL  +  ++S+L++F ALS  K   + +RIL
Sbjct: 55  VRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRIL 114

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           + +I   N+F WN  +RGY  S   +   +LY  ML  G + P+N T+P +L  C    S
Sbjct: 115 Y-RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYS 173

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G  +  H++KFG E D+F+ NA I      G ++ A+ VF  S  RDLV++N++I G
Sbjct: 174 SCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
             +      A+ ++++M+   ++P+  T + M S+C+++ D  +GK+FH  + ++   + 
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEH--GLE 291

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
             + L  A+++MY KCG +  A  +F  M   K+  +W++M+ GY R G ++ AR++  +
Sbjct: 292 FTIPLTNALMDMYVKCGELLTARVLFDNMA-QKTLVSWTTMVLGYARFGFLDVAREILYK 350

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           + ++ +V W A+ISG  Q     +AL LF +M+   I PD+VTMV  L AC  LGALD G
Sbjct: 351 IPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVG 410

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             +H  YIE      ++ L TA++DMYAKCG+I  AL VF +IP+  +    + ++I GL
Sbjct: 411 IWIHH-YIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ--RNCLTWTAVICGL 467

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           A HG  + +++ F +M  +G+ PD +TF+ VL AC HGGLVEEG+++F  M + + + P+
Sbjct: 468 ALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPK 527

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           ++HY CMVDLL R G L+EA  L+++MP  A++ +  AL  ACR++ N +IGE    KLL
Sbjct: 528 LKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLL 587

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           +++P    +YVLL++M +E   W+EAR  RKLM+D G++K PG S +E NG +H F+
Sbjct: 588 EIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFV 644


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/635 (38%), Positives = 361/635 (56%), Gaps = 39/635 (6%)

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIH-FYSIFGYINNAHKVFEGSLARDLVS 177
           ++ SS K   QIH  I K GL  D L     L+H   +I   ++ A ++F      D   
Sbjct: 10  SKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFM 69

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           +NTLI   +  + P  +L  F +++    + PD+FTF     A       R G Q H+  
Sbjct: 70  HNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQA 129

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS-------------------- 276
           +++     +++ + T +I+MYA+CG    A RVF  M                       
Sbjct: 130 FRH--GFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEG 187

Query: 277 ----------KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                     ++  +W+ M++GY + G++  AR++F +M  RD VSW+ MI G++  G F
Sbjct: 188 AQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCF 247

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
            +A   F ++    I  +EV++  VL AC   GA +FGK LH  ++E   F     +  A
Sbjct: 248 DEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHG-FVEKAGFLYVGSVNNA 306

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +ID Y+KCG++  A  VF  +P     VS + SII+GLA HG GE +I +F EME  G++
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVS-WTSIIAGLAMHGCGEEAIQLFHEMEESGVR 365

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           PDG+TF+++L ACSH GLVEEG   F  M N YGI+P +EHYGCMVDL  R  RL +AY 
Sbjct: 366 PDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYE 425

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
            I  MP   N++IWR LL AC +H N ++ E+   +L +++PD+   +VLLSN+ A   +
Sbjct: 426 FICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGK 485

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           W++   +R+ M +  ++K PGWS IE +  ++ F+A +K +  T+E    L+++ ++L++
Sbjct: 486 WKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRT 545

Query: 626 -AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHL 684
            AGY P    V+ D++EEEKE  VS HSEKLA AFG+        +RI KNLR+CGDCH 
Sbjct: 546 EAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHT 605

Query: 685 AFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             KL+S++Y+ EI+VRD  RFH FK G CSC D+W
Sbjct: 606 VMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 178/401 (44%), Gaps = 73/401 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++LL  C SLK   QIH QI  +GL+   +   +L+   A++   + L  +  LF    N
Sbjct: 6   VSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAIT-ISDALHYALRLFHHFPN 64

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P+ F+ NTL+R  S S +P  +L  +  +  +  +SP++FTF F L + A     + G Q
Sbjct: 65  PDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQ 124

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF----------------------- 167
           +H    + G +  +F+   LI  Y+  G   +A +VF                       
Sbjct: 125 LHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGD 184

Query: 168 -EGSL-------ARDLVSYNTLINGYAQVKE----------------------------- 190
            EG+         R+L S+N ++ GYA+  E                             
Sbjct: 185 VEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHN 244

Query: 191 PC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNM 247
            C   A   FR++    I+ +  +   + SAC +      GK  H  V K     VGS  
Sbjct: 245 GCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGS-- 302

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+I+ Y+KCG + MA  VF  M +++S  +W+S+I+G    G  E A QLF +M++
Sbjct: 303 -VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361

Query: 308 R----DLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHP 343
                D +++ +++   S  G   +   LF KM++L GI P
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEP 402



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 3/250 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++   +   W+T++ G++ +    EA   +  +L + I + N  +   VL++CA
Sbjct: 219 ARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRT-NEVSLTGVLSACA 277

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYN 179
           +  +F+ G  +H  + K G  +   + NALI  YS  G +  A  VF+   +AR +VS+ 
Sbjct: 278 QAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWT 337

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++I G A       A+ LF +M++S ++PD  TF+++  AC+       G    + + KN
Sbjct: 338 SIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKM-KN 396

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           L  +   +     ++++Y +   +  A      M +S +   W +++   +  G IE A 
Sbjct: 397 LYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAE 456

Query: 300 QLFDQMDQRD 309
            +  ++ + D
Sbjct: 457 LVKARLAEMD 466


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/746 (34%), Positives = 399/746 (53%), Gaps = 56/746 (7%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           S  +++++C SL   + A+Q+H  +   G        + ++  +   G    +  +  +F
Sbjct: 148 SFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCG---DVDLAETVF 204

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS------------------- 106
             I+ P++F WN+++ GYS+   P +AL ++  M  +  VS                   
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 107 -----------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
                      PN  T+  VL++CA  S  K G  +H  I++     DL   N LI  Y+
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYA 324

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G ++ A +VF+     D +S+N+LI G         AL LF +M+ S +  D F    
Sbjct: 325 KCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPT 384

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           +   C+  +    G+  H    K+   +GS+  +  A+I MYAKCG  + A+ VF  M +
Sbjct: 385 ILGVCSGPDYASTGELLHGYTIKS--GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPL 442

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            ++T +W++MI+ ++R G I +AR  FD M +R++V+W +M+S Y Q G   + L+L+  
Sbjct: 443 -RNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVS 501

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR--NIFLTTAVIDMYAK 393
           M S G+ PD +T    +RAC  L  +  G    Q       FG   N+ +  +++ MY++
Sbjct: 502 MRSNGVQPDWITFTTSIRACADLAIVKLGM---QVVTHATKFGLSLNVSVANSIVTMYSR 558

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG I  A + F  I    K +  +N++++  AQ+GLG   I  F +M     KP+ +++V
Sbjct: 559 CGLIKEAKNTFDSIDD--KDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYV 616

Query: 454 TVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           +VL  CSH GLV EGK +F+SM   +GI P  EH+ CMVDLL R G L++A  LI+ MP+
Sbjct: 617 SVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPF 676

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
             N+ +W ALL +CR+H + ++ E A +KL++L+ +    YVLLSNM +E+   +    +
Sbjct: 677 KPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADM 736

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           RKLM   GI+   G S+IE +  +H F   + SHPQ KE+ L L++M   ++  G     
Sbjct: 737 RKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTG---KY 793

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
           + V   V   +K     YHSEKLA AFGL+N  S   I + KNLR+C DCHL  KLLS +
Sbjct: 794 ITVESSVHRSKK-----YHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLV 848

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDF 718
             RE+++RD  RFH FK G CSC D+
Sbjct: 849 TSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 227/460 (49%), Gaps = 36/460 (7%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLAR--DLVSYNTLINGYAQVKEPCPALWLF-- 198
           ++F  N +I        +++A K+F+    R  D VS+ T+I+GY+Q      +   F  
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 199 --RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
             R   D     D F+F ++  AC  L D R+  Q HA+V K LG  G    ++ +V+ M
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSK-LG-FGMETCIQNSVVGM 190

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           Y KCG +++AE VF  +    S   W+SMI GY++     +A Q+F++M +RD VSW  +
Sbjct: 191 YVKCGDVDLAETVFFDIE-RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTL 249

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE--- 373
           IS +SQ G   Q L +F +M + G  P+ +T  +VL AC     L +G  LH + +    
Sbjct: 250 ISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEH 309

Query: 374 --NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
             ++VFG        +IDMYAKCG +D A  VF  + ++   +S +NS+I+G+   GLGE
Sbjct: 310 SLDLVFG------NGLIDMYAKCGCLDLAKRVFKSLREH-DHIS-WNSLITGVVHFGLGE 361

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ +F +M    +  D     T+L  CS       G+      +  G+         ++
Sbjct: 362 DALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAII 421

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
            + A+ G  D+A  + + MP   N++ W A++ A    R+  IG+  G    D+ P+   
Sbjct: 422 TMYAKCGDTDKADLVFRLMPL-RNTISWTAMITA--FSRSGDIGKARG--YFDMMPERN- 475

Query: 552 HYVLLSNMLAETYRW----EEARQVRKLMDDSGIQKPPGW 587
             ++  N +  TY      EE  ++   M  +G+Q  P W
Sbjct: 476 --IVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ--PDW 511



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 141/604 (23%), Positives = 249/604 (41%), Gaps = 136/604 (22%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLIS-FFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           KS   A ++H Q++ SGL+  +     +   ++  G  +  F+   +F +  + NIF WN
Sbjct: 22  KSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQ---VFQETHHRNIFTWN 78

Query: 78  TLMRGYSRSDSPQEALVLY-------------TSMLS----------------------- 101
           T++R    S    +A  L+             T+M+S                       
Sbjct: 79  TMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTN 138

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
            G  + + F+F  V+ +C  L   +   Q+H  + K G   +  I+N+++  Y   G ++
Sbjct: 139 DGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVD 198

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS----------------- 204
            A  VF       L  +N++I GY+Q+  P  AL +F +M +                  
Sbjct: 199 LAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGF 258

Query: 205 -----------CIQ---PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
                      C Q   P+  T+ ++ SAC   +D + G   HA + +    +  +++  
Sbjct: 259 GVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSL--DLVFG 316

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             +I+MYAKCG +++A+RVF ++       +W+S+I+G    G  E A  LF+QM +  +
Sbjct: 317 NGLIDMYAKCGCLDLAKRVFKSL-REHDHISWNSLITGVVHFGLGEDALILFNQMRRSSV 375

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V                                DE  +  +L  C G      G+ LH  
Sbjct: 376 V-------------------------------LDEFILPTILGVCSGPDYASTGELLHGY 404

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL------------------ 411
            I++ + G +  +  A+I MYAKCG  D A  VF  +P +N                   
Sbjct: 405 TIKSGM-GSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGK 463

Query: 412 ----------KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
                     + +  +NS++S   Q+G  E  + ++  M   G++PD +TF T + AC+ 
Sbjct: 464 ARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACAD 523

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
             +V+ G Q       +G+   +     +V + +R G + EA     S+  D + + W A
Sbjct: 524 LAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNA 582

Query: 522 LLAA 525
           +LAA
Sbjct: 583 MLAA 586


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/734 (34%), Positives = 417/734 (56%), Gaps = 39/734 (5%)

Query: 1   MKRLVLEHSSLLALLESCKSL------KQALQIHGQIVHSGLNHHISSSQLISFFALSGC 54
           M+ + L   +L+++  +C +L      +   Q+HG  +  G     +++ L++ +A  G 
Sbjct: 187 MENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLG- 245

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
              +  S+ LF    + ++  WNT++  +S+SD   EAL  +  M+ +G V  +  T   
Sbjct: 246 --RVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG-VELDGVTIAS 302

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
           VL +C+ L     G +IH ++++   L  + F+ +AL+  Y     + +  +VF+  L R
Sbjct: 303 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 362

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            +  +N +I+GYA+      AL LF +M + + + P+  T  ++  AC         +  
Sbjct: 363 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESI 422

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H    K LG    +  ++ A+++MY++ G M+++E +F +M + +   +W++MI+GY   
Sbjct: 423 HGYAVK-LG-FKEDRYVQNALMDMYSRMGKMDISETIFDSMEV-RDRVSWNTMITGYVLS 479

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G+   A  L  +M + +            + GG  +              P+ +T++ VL
Sbjct: 480 GRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYK--------------PNAITLMTVL 525

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
             C  L A+  GK +H   I N++   +I + +A++DMYAKCG ++ +  VF ++P   K
Sbjct: 526 PGCAALAAIAKGKEIHAYAIRNML-ASDITVGSALVDMYAKCGCLNLSRRVFNEMPN--K 582

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMG-----LKPDGVTFVTVLCACSHGGLVEE 467
            V  +N +I     HG GE ++ +F+ M          KP+ VTF+TV  ACSH GL+ E
Sbjct: 583 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISE 642

Query: 468 GKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAA 525
           G   F  M  ++G++P  +HY C+VDLL R G+L+EAY L+ +MP + + V  W +LL A
Sbjct: 643 GLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 702

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR+H+N ++GE+A + LL LEP+  +HYVLLSN+ +    W +A +VRK M   G++K P
Sbjct: 703 CRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 762

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S+IE    +H+F+A   SHPQ++++   L+ ++ K++  GYVP+T  V+ +VDE+EKE
Sbjct: 763 GCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKE 822

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  HSEKLA+AFG++N+    TIR+ KNLR+C DCH A K +S+I  REI+VRD  RF
Sbjct: 823 NLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRF 882

Query: 706 HLFKKGNCSCMDFW 719
           H FK+G CSC D+W
Sbjct: 883 HHFKEGTCSCGDYW 896



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 218/456 (47%), Gaps = 46/456 (10%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W   +R  +RS+  +EA+  Y  M   G   P+NF FP VL + + L   K+G QIH   
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118

Query: 136 IKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           +KFG     + + N L++ Y   G I +  KVF+    RD VS+N+ I    + ++   A
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQA 178

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTEL---NDPRIGKQFHAVVYKNLGCVGSN-MLLK 250
           L  FR MQ   ++  +FT V++  AC+ L   +  R+GKQ H    +    VG       
Sbjct: 179 LEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLR----VGDQKTFTN 234

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A++ MYAK G                                +++ ++ LF+    RD+
Sbjct: 235 NALMAMYAKLG--------------------------------RVDDSKALFESFVDRDM 262

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW  MIS +SQ   FS+AL  F  M   G+  D VT+ +VL AC  L  LD GK +H  
Sbjct: 263 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 322

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            + N     N F+ +A++DMY  C  +++   VF  I    + + L+N++ISG A++GL 
Sbjct: 323 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILG--RRIELWNAMISGYARNGLD 380

Query: 431 ETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
           E ++ +F EM ++ GL P+  T  +V+ AC H       +      +  G K        
Sbjct: 381 EKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNA 440

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           ++D+ +R G++D +  +  SM    + V W  ++  
Sbjct: 441 LMDMYSRMGKMDISETIFDSMEV-RDRVSWNTMITG 475



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R   SW   +   ++   F +A+  + +M   G  PD     AVL+A  GL  L  G+++
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   ++      ++ +   +++MY KCG I     VF +I  +   VS +NS I+ L + 
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRI-TDRDQVS-WNSFIAALCRF 172

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKPQM 484
              E ++  FR M++  ++    T V+V  ACS+ G++     GKQ     L  G +   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +   M  + A+ GR+D++  L +S   D + V W  ++++
Sbjct: 233 TNNALMA-MYAKLGRVDDSKALFESF-VDRDMVSWNTMISS 271


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/554 (42%), Positives = 339/554 (61%), Gaps = 40/554 (7%)

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           F G +  DL   N++I  Y    +   +++++ +M  + I PD+ TF  +  +  +L   
Sbjct: 101 FYGFIDSDLC--NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQ 158

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +GK  H  + + +G   SN+ + TA++NMY  C                          
Sbjct: 159 ELGKAIHCCIIQ-MG-FESNVYVSTALVNMYGTCS------------------------- 191

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                   +  ARQ+FD++  R++VSW A+I+GY+    F + +++F +M+  G  P EV
Sbjct: 192 -------SVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEV 244

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           TMV VL AC  LGAL+ G+ +   YI++     N+F+ TA+IDMYAKCG +D A  +F  
Sbjct: 245 TMVGVLLACAHLGALNQGRWI-DDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKA 303

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +   +K V  +N +ISG A +G GE+++  F  M +   KPD VTF+ VLCAC H GLV 
Sbjct: 304 M--RVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVN 361

Query: 467 EGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+ +F SM   +G++P++EHYGCMVDLL R G LDEA  LIQ+M    + +IWR LL A
Sbjct: 362 EGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGA 421

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR+H N ++GE A +KLL+LEP++G +YVLL+N+ A   RW++  +VR++MD   ++K P
Sbjct: 422 CRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVP 481

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S IE +  ++ F+ S    P  +E+  +L DM  KLK AGYV +T    +D++EEEKE
Sbjct: 482 GCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKE 541

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             + YHSEKLALAFGL+ S S  T+RI KNLRIC DCH  FK++S++YRR+I VRD  RF
Sbjct: 542 HSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRF 601

Query: 706 HLFKKGNCSCMDFW 719
           H F  G CSC D+W
Sbjct: 602 HHFVGGACSCKDYW 615


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/513 (43%), Positives = 324/513 (63%), Gaps = 34/513 (6%)

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
           P+ FT+  +  AC  + +  +GK  H  V K  G  G  + ++  +++MY  C       
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMK-FG-FGDEVNVQNTLVHMYCCC------- 58

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
                                   EG IE AR++FD+M + D VSW+AMI GY +VG  S
Sbjct: 59  ---------------------RGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSS 97

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
            A+ LF +M+  G+ PDE+TMV+VL AC GLGAL+ GK + + Y+E     +N+ L+ A+
Sbjct: 98  DAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWV-ESYVEKERVQKNVELSNAL 156

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           IDM+AKCG +D A ++F  + +  + +  + S+I GLA HG G  ++AVF EM   G+ P
Sbjct: 157 IDMFAKCGDVDKATNLFRSMRE--RNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTP 214

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           D V F+ +L ACSH GLV++GK++F+SM  ++ I P++EHYGCMVD+L R G + EA   
Sbjct: 215 DDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKF 274

Query: 507 IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566
           +Q MP D N V+WR L+ ACR H   K+GE   ++L+  EP H ++YVLLSN+ A+   W
Sbjct: 275 VQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDW 334

Query: 567 EEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA 626
           E+  ++R+ MD  G++K PG + IE +  ++ F+A  KSH Q+KEI  M+ +M  ++K A
Sbjct: 335 EKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRA 394

Query: 627 GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAF 686
           GY+P T +V+ D+D+E+KE  ++ HSEKLA+AF L+N+     IRI KNLR+C DCH A 
Sbjct: 395 GYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSAS 454

Query: 687 KLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           K +S+IY REI+VRD  RFH FK G CSC DFW
Sbjct: 455 KFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 159/332 (47%), Gaps = 42/332 (12%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF----GYINN 162
           PN FT+PFVL +CA + +   G  +H  ++KFG   ++ ++N L+H Y       G I  
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A KVF+     D VS++ +I GY +V     A+ LFR+MQ   + PD  T V++ SACT 
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L    +GK   + V K    V  N+ L  A+I+M+AKCG ++ A  +F +M   ++  +W
Sbjct: 128 LGALELGKWVESYVEKER--VQKNVELSNALIDMFAKCGDVDKATNLFRSM-RERNIVSW 184

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +S+I G    G+                                 +A+ +F +M   G+ 
Sbjct: 185 TSVIGGLAMHGR-------------------------------GVEAVAVFEEMVRSGVT 213

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD+V  + +L AC   G +D GKR      ++      I     ++DM  + G +  AL 
Sbjct: 214 PDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALK 273

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHG---LGE 431
              ++P +   V ++ ++I+    HG   LGE
Sbjct: 274 FVQEMPIDPNPV-VWRTLINACRAHGELKLGE 304



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 140/297 (47%), Gaps = 7/297 (2%)

Query: 14  LLESCK---SLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLFRSRILFSQI 68
           +L++C    +L     +HG ++  G    ++    +   +    G + G+  +R +F ++
Sbjct: 16  VLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEM 75

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +   W+ ++ GY R     +A+ L+  M  KG V P+  T   VL++C  L + + G
Sbjct: 76  YKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKG-VCPDEITMVSVLSACTGLGALELG 134

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +  ++ K  ++ ++ + NALI  ++  G ++ A  +F     R++VS+ ++I G A  
Sbjct: 135 KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMH 194

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ +F +M  S + PD   F+ + SAC+       GK++   + K+   V   + 
Sbjct: 195 GRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIV-PKIE 253

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
               +++M  + GL+  A +    M +  +   W ++I+     G+++   ++  Q+
Sbjct: 254 HYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQL 310


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/476 (44%), Positives = 321/476 (67%), Gaps = 7/476 (1%)

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++  +++ +Y   GL++ A RV  + G +    +W++M+SGY + G +  AR++F +M +
Sbjct: 114 VVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPE 173

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R+LVSW+AM+    + G F +AL +F +M      PD V +V+VL+AC  LGA++ G+ +
Sbjct: 174 RNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWV 233

Query: 368 HQQYIENVVFGR---NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           H+ Y+E   FG    N+ L TA++DMY KCG ++ A  VF  + +  + V L+N++I GL
Sbjct: 234 HR-YLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHR--RDVVLWNAMIGGL 290

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A +G GE ++ +FR M   G  P+  TF+ VLCAC+H G V+EGK+ F+SM +YGIKPQ 
Sbjct: 291 AMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQR 350

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHYGC+ DLL R G ++EA  L+  MP + ++  W AL+++C++H +  +GE  G++L++
Sbjct: 351 EHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIE 410

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           LEP  G  YV+L N+ A   RWEEAR +R++M+D G +K  G S+IE NG +H F++   
Sbjct: 411 LEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDT 470

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV-DEEEKETVVSYHSEKLALAFGLIN 663
            HP T++I  +L+D+  +L+  GYV +T QV+ D+ DEE+K   +SYHSE+LALAFG++N
Sbjct: 471 RHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILN 530

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                 IRI KNLR+C DCH+  KL+S++Y REI+VRD  RFH+F+ G CSC D+W
Sbjct: 531 IPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 74/374 (19%)

Query: 146 IRNALIHFYSIFGYINNAHKV-FEGSLARDLVSYNTLINGYAQ----------------- 187
           + N+L+  Y   G ++ A +V + G  A D+VS+NT+++GY +                 
Sbjct: 115 VTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 188 --------------VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
                           E   ALW+F +M     +PD    V++  AC  L     G+  H
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234

Query: 234 AVVYKNLGCVG---SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
              Y   G  G    N++L+TA+++MY KCG M  A +VF  +   +    W++MI G  
Sbjct: 235 R--YLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGV-HRRDVVLWNAMIGGLA 291

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             G  ER                               ALELF +M   G  P+E T +A
Sbjct: 292 MNGYGER-------------------------------ALELFRRMLQKGFMPNESTFIA 320

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC   G +D GKR+ +  +++            + D+  + G+++ A ++   +P  
Sbjct: 321 VLCACTHTGRVDEGKRVFKS-MQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPME 379

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGK 469
               S + +++S    H   + ++       L+ L+P DG  +V +    +  G  EE +
Sbjct: 380 -PHASQWGALMSSCQMH--NDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEAR 436

Query: 470 QFFESMLNYGIKPQ 483
              + M + G K +
Sbjct: 437 TIRQMMEDRGAKKE 450



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 139/309 (44%), Gaps = 16/309 (5%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + ++S +   G    L  +R +F+++   N+  W+ ++    R+    EAL ++  M
Sbjct: 146 VSWNTMVSGYGKGG---DLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK---FGLEFDLFIRNALIHFYSI 156
           + +    P+      VL +CA L + + G  +H ++      G   +L +  AL+  Y  
Sbjct: 203 MREEF-RPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCK 261

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A +VF+G   RD+V +N +I G A       AL LFR+M      P+  TF+A+
Sbjct: 262 CGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAV 321

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMG 274
             ACT       GK+    V+K++   G     +    + ++  + G +  AE +   M 
Sbjct: 322 LCACTHTGRVDEGKR----VFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMP 377

Query: 275 MSKSTAAWSSMISGYTREGKI---ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
           M    + W +++S       I   ER  +   +++  D   +  + + Y+  G + +A  
Sbjct: 378 MEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEART 437

Query: 332 LFGKMESLG 340
           +   ME  G
Sbjct: 438 IRQMMEDRG 446


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/583 (39%), Positives = 367/583 (62%), Gaps = 21/583 (3%)

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           E+D+   NAL+  Y  +G ++ A ++F+    RD+VS+N +++GYA+  +   A    R+
Sbjct: 65  EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RR 120

Query: 201 MQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           + D+    D FT+ A+ S   +   L + R  + F A+  +N   V  N     A++  Y
Sbjct: 121 LFDAAPVRDVFTWTAVVSGYAQNGMLEEAR--RVFDAMPERN--AVSWN-----AMVAAY 171

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            +  +M+ A+ +F+ M   ++ A+W++M++GY + G +E A+ +FD M Q+D VSW AM+
Sbjct: 172 IQRRMMDEAKELFNMMP-CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 230

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           + YSQ G   + L+LF +M   G   +      VL  C  + AL+ G +LH + I    +
Sbjct: 231 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR-AGY 289

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
           G   F+  A++ MY KCG+++ A + F ++ +  + V  +N++I+G A+HG G+ ++ +F
Sbjct: 290 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEE--RDVVSWNTMIAGYARHGFGKEALEIF 347

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLAR 496
             M     KPD +T V VL ACSH GLVE+G  +F SM  ++G+  + EHY CM+DLL R
Sbjct: 348 DMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGR 407

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            GRL EA+ L++ MP++ +S +W ALL A R+HRN ++G  A +K+ +LEP++   YVLL
Sbjct: 408 AGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 467

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A + +W +AR++R +M++ G++K PG+S+IE    +H F A    HP+ ++I   L
Sbjct: 468 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFL 527

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
           +D+ M++K AGYV  T  V+ DV+EEEKE ++ YHSEKLA+A+G++N      IR+ KNL
Sbjct: 528 EDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNL 587

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+CGDCH AFK +S I  R I++RD+ RFH F+ G+CSC D+W
Sbjct: 588 RVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 171/368 (46%), Gaps = 45/368 (12%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD V+YN +I+ +A        + L R   D   + DA ++  M +A       R G+  
Sbjct: 4   RDSVTYNVMISSHANHG----LVSLARHYFDLAPEKDAVSWNGMLAAYV-----RNGR-- 52

Query: 233 HAVVYKNLGCVGS----NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
              V +  G   S    +++   A+++ Y + G M+ A  +F  M   +   +W+ M+SG
Sbjct: 53  ---VEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP-GRDVVSWNIMVSG 108

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y R G +  AR+LFD    RD+ +WTA++SGY+Q G   +A  +F  M       + V+ 
Sbjct: 109 YARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSW 164

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            A++ A +    +D  K L      N++  RN+     ++  YA+ G ++ A +VF  +P
Sbjct: 165 NAMVAAYIQRRMMDEAKELF-----NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 219

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  K    + ++++  +Q G  E ++ +F EM   G   +   F  VL  C+    +E G
Sbjct: 220 Q--KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 277

Query: 469 KQFFESML--NYGIKPQMEHYGCMVD--LLA---RDGRLDEAYGLIQSMPYDANSVIWRA 521
            Q    ++   YG+       GC V   LLA   + G +++A    + M  + + V W  
Sbjct: 278 MQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNT 329

Query: 522 LLAACRLH 529
           ++A    H
Sbjct: 330 MIAGYARH 337



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 143/315 (45%), Gaps = 36/315 (11%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS-------------- 106
           ++ LF+ +   N+  WNT++ GY+++   +EA  ++ +M  K  VS              
Sbjct: 180 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 239

Query: 107 ----------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
                            N   F  VL++CA +++ + G Q+H  +I+ G     F+ NAL
Sbjct: 240 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 299

Query: 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           +  Y   G + +A   FE    RD+VS+NT+I GYA+      AL +F  M+ +  +PD 
Sbjct: 300 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 359

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V + +AC+       G  +   ++ + G V +     T +I++  + G +  A  + 
Sbjct: 360 ITLVGVLAACSHSGLVEKGISYFYSMHHDFG-VTAKPEHYTCMIDLLGRAGRLAEAHDLM 418

Query: 271 STMGMSKSTAAWSSMI--SGYTREGKIER--ARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
             M     +  W +++  S   R  ++ R  A ++F +++  +   +  + + Y+  G +
Sbjct: 419 KDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIF-ELEPENAGMYVLLSNIYASSGKW 477

Query: 327 SQALELFGKMESLGI 341
             A ++   ME  G+
Sbjct: 478 RDARKMRVMMEERGV 492



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 149/420 (35%), Gaps = 112/420 (26%)

Query: 55  KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           +NG +  +R LF+     ++  WN LM GY +     EA  L+  M  + +VS N     
Sbjct: 49  RNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN----- 103

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +++  AR        +    +       D+F   A++  Y+  G +  A +VF+    R
Sbjct: 104 IMVSGYARRGDMVEARR----LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 159

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQ---------------------------DSCI 206
           + VS+N ++  Y Q +    A  LF  M                            D+  
Sbjct: 160 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 219

Query: 207 QPDAFTFVAMFSA-----------------------------------CTELNDPRIGKQ 231
           Q DA ++ AM +A                                   C ++     G Q
Sbjct: 220 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 279

Query: 232 FHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            H  + +    +GC   N LL      MY KCG M  A   F  M   +   +W++MI+G
Sbjct: 280 LHGRLIRAGYGVGCFVGNALLA-----MYFKCGNMEDARNAFEEM-EERDVVSWNTMIAG 333

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y R G        F +                       +ALE+F  M +    PD++T+
Sbjct: 334 YARHG--------FGK-----------------------EALEIFDMMRTTSTKPDDITL 362

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V VL AC   G ++ G         +          T +ID+  + G +  A  +   +P
Sbjct: 363 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 422


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/654 (36%), Positives = 373/654 (57%), Gaps = 43/654 (6%)

Query: 71  PNIFIWNTLMRGYSRSDS---PQEALVLYT-SMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           PN  +     R Y+ + +   P  + VL    +L  G ++P    +   + +CA+  + +
Sbjct: 9   PNYLLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLE 68

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
              ++H H+       D F+ N+LIH Y   G +  A KVF+    +D+VS+ +LI GYA
Sbjct: 69  DARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYA 128

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGS 245
           Q   P  A+ L   M     +P+ FTF ++  A     D  IG+Q HA+  K   C    
Sbjct: 129 QNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVK---CDWHE 185

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ + +A+++MYA+CG+M+M                                A  +FD++
Sbjct: 186 DVYVGSALLDMYARCGMMDM--------------------------------ATAVFDKL 213

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           D ++ VSW A+ISG+++ G    AL  F +M   G      T  +V  +   LGAL+ GK
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGK 273

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H   I++       F    ++DMYAK GS+  A  VF ++  + K +  +N++++  A
Sbjct: 274 WVHAHMIKSRQ-KMTAFAGNTLLDMYAKSGSMIDARKVFDRV--DDKDLVTWNTMLTAFA 330

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           Q+GLG+ +++ F EM   G+  + VTF+ +L ACSHGGLV+EGK++FE M  Y ++P+++
Sbjct: 331 QYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEID 390

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           H+  +V LL R G L+ A   I  MP +  + +W ALLAACR+H+NAK+G+ A   + +L
Sbjct: 391 HFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFEL 450

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +PD     VLL N+ A T +W+ A +VR++M  +G++K P  S++E   ++H F+A+  +
Sbjct: 451 DPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDT 510

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP+ +EI  M   ++ K++  GYVP+   V+  VD++E+E  + YHSEKLALAF LI   
Sbjct: 511 HPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMP 570

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +  TIRI KN+RICGDCH AFK +S+++ REI+VRD  RFH F  G+CSC D+W
Sbjct: 571 AGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 213/447 (47%), Gaps = 54/447 (12%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNG-LFRSRILF 65
           H+ + A  +S K+L+ A ++H  +  S         + LI  +    CK G +  +R +F
Sbjct: 55  HTFITACAQS-KNLEDARKVHAHLASSRFAGDAFLDNSLIHLY----CKCGSVLEARKVF 109

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   ++  W +L+ GY+++D P+EA+ L   ML KG   PN FTF  +L +    +  
Sbjct: 110 DEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGML-KGRFKPNGFTFASLLKAAGAHADS 168

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G QIH   +K     D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI+G+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN---LGC 242
           A+  +   AL  F +M  +  +   FT+ ++FS+   L     GK  HA + K+   +  
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              N LL     +MYAK G M  A +VF                                
Sbjct: 289 FAGNTLL-----DMYAKSGSMIDARKVF-------------------------------- 311

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D++D +DLV+W  M++ ++Q G   +A+  F +M   GI+ ++VT + +L AC   G + 
Sbjct: 312 DRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVK 371

Query: 363 FGKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
            GKR  +   E ++    + F+T  V+ +  + G ++ AL   +K+P    T +++ +++
Sbjct: 372 EGKRYFEMMKEYDLEPEIDHFVT--VVALLGRAGLLNFALVFIFKMPIE-PTAAVWGALL 428

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPD 448
           +    H      +  F    +  L PD
Sbjct: 429 AACRMH--KNAKVGQFAADHVFELDPD 453



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 153/321 (47%), Gaps = 12/321 (3%)

Query: 26  QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           QIH   V    +  +   S L+  +A  G  +    +  +F ++D+ N   WN L+ G++
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGMMD---MATAVFDKLDSKNGVSWNALISGFA 229

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R    + AL+ +  ML  G     +FT+  V +S ARL + + G  +H H+IK   +   
Sbjct: 230 RKGDGETALMTFAEMLRNGF-EATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F  N L+  Y+  G + +A KVF+    +DLV++NT++  +AQ      A+  F +M+ S
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            I  +  TF+ + +AC+     + GK++  ++ +    +   +     V+ +  + GL+N
Sbjct: 349 GIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEY--DLEPEIDHFVTVVALLGRAGLLN 406

Query: 265 MAERVFSTMGMSKSTAAWSSMISG--YTREGKIER--ARQLFDQMDQRDLVSWTAMISGY 320
            A      M +  + A W ++++     +  K+ +  A  +F ++D  D      + + Y
Sbjct: 407 FALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVF-ELDPDDSGPPVLLYNIY 465

Query: 321 SQVGGFSQALELFGKMESLGI 341
           +  G +  A  +   M++ G+
Sbjct: 466 ASTGQWDAAARVRRIMKTTGV 486


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 382/630 (60%), Gaps = 12/630 (1%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFS 66
           H +L  LL+ C S+K+   +H QI+  GL   + +  +L+S     G    L  + +LF 
Sbjct: 39  HQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEG---DLRYAHLLFD 95

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           QI  PN F++N L+RGYS S+ P ++L+L+  M+S G + PN FTFPFVL +CA    + 
Sbjct: 96  QIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPM-PNQFTFPFVLKACAAKPFYW 154

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
               +H   IK G+     ++NA++  Y     I +A +VF+    R +VS+N++I GY+
Sbjct: 155 EAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYS 214

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           ++     A+ LF++M    ++ D FT V++ SA ++  +  +G+  H  +Y  +  V  +
Sbjct: 215 KMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVH--LYIVITGVEID 272

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            ++  A+I+MYAKCG +  A+ VF  M + K   +W+SM++ Y  +G +E A Q+F+ M 
Sbjct: 273 SIVTNALIDMYAKCGHLQFAKHVFDQM-LDKDVVSWTSMVNAYANQGLVENAVQIFNHMP 331

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            +++VSW ++I    Q G +++A+ELF +M   G+ PD+ T+V++L  C   G L  GK+
Sbjct: 332 VKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQ 391

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            H    +N++   ++ L  ++IDMYAKCG++ TA+ +F+ +P+  K V  +N II  LA 
Sbjct: 392 AHCYICDNII-TVSVTLCNSLIDMYAKCGALQTAIDIFFGMPE--KNVVSWNVIIGALAL 448

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           HG GE +I +F+ M+  GL PD +TF  +L ACSH GLV+ G+ +F+ M++ + I P +E
Sbjct: 449 HGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVE 508

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY CMVDLL R G L EA  LIQ MP   + V+W ALL ACR++ N +I +   ++LL+L
Sbjct: 509 HYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLEL 568

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
              +   YVLLSNM +E+ RW++ +++RK+MDDSGI+K    S+IE +G  ++F+   K 
Sbjct: 569 GRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKR 628

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           H  +  I  +L  +   LKS GY   + +V
Sbjct: 629 HCASTGIYSILDQLMDHLKSVGYPCKSSEV 658


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/660 (36%), Positives = 385/660 (58%), Gaps = 30/660 (4%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF  +   ++  WN ++ GY+++    EA  ++  M  +  +S N     +V N   RL 
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHN--GRLK 187

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +        + +    ++L   N L+  Y     + +A ++F+    RD++S+NT+I+
Sbjct: 188 EAR-------RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNL 240
           GYAQV +   A  LF    +S I+ D FT+ AM S   +   +++ R  K F  +  KN 
Sbjct: 241 GYAQVGDLSQAKRLF---NESPIR-DVFTWTAMVSGYVQNGMVDEAR--KYFDEMPVKN- 293

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                  +   A++  Y +   M +A  +F  M   ++ ++W++MI+GY + G I +AR+
Sbjct: 294 ------EISYNAMLAGYVQYKKMVIAGELFEAMP-CRNISSWNTMITGYGQNGGIAQARK 346

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LFD M QRD VSW A+ISGY+Q G + +AL +F +M+  G   +  T    L  C  + A
Sbjct: 347 LFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAA 406

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L+ GK++H Q ++   F    F+  A++ MY KCGS D A  VF  I +  K V  +N++
Sbjct: 407 LELGKQVHGQVVK-AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEE--KDVVSWNTM 463

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYG 479
           I+G A+HG G  ++ +F  M+  G+KPD +T V VL ACSH GL++ G ++F SM  +Y 
Sbjct: 464 IAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYN 523

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           +KP  +HY CM+DLL R GRL+EA  L+++MP+D  +  W ALL A R+H N ++GE A 
Sbjct: 524 VKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAA 583

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           + +  +EP +   YVLLSN+ A + RW +  ++R  M ++G+QK  G+S++E    +H F
Sbjct: 584 EMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTF 643

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
                 HP+   I   L+++ +K++  GYV +T  V+ DV+EEEKE ++ YHSEKLA+AF
Sbjct: 644 SVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAF 703

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           G++   +   IR+ KNLR+C DCH A K +S+I  R I++RD+ RFH F +G CSC D+W
Sbjct: 704 GILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 220/493 (44%), Gaps = 58/493 (11%)

Query: 54  CKNGLFRSRILFS--------QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
           C N  +RS+   +        +  +P+I  WN  +  + R+     AL ++ SM  +  V
Sbjct: 19  CTNNYYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSV 78

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS----IFGYIN 161
           S N     ++ N+                  KF L  DLF +      +S    + GY+ 
Sbjct: 79  SYNAMISGYLRNA------------------KFSLARDLFDKMPERDLFSWNVMLTGYVR 120

Query: 162 N-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
           N     AHK+F+    +D+VS+N +++GYAQ      A  +F KM       ++ ++  +
Sbjct: 121 NRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGL 176

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            +A       +  ++       N   +  N L+       Y K  ++  A ++F  M + 
Sbjct: 177 LAAYVHNGRLKEARRLFE-SQSNWELISWNCLMGG-----YVKRNMLGDARQLFDRMPV- 229

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           +   +W++MISGY + G + +A++LF++   RD+ +WTAM+SGY Q G   +A + F +M
Sbjct: 230 RDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
                  +E++  A+L      G + + K +    +   +  RNI     +I  Y + G 
Sbjct: 290 PV----KNEISYNAML-----AGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGG 340

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           I  A  +F  +P+  +    + +IISG AQ+G  E ++ +F EM+  G   +  TF   L
Sbjct: 341 IAQARKLFDMMPQ--RDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCAL 398

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
             C+    +E GKQ    ++  G +        ++ +  + G  DEA  + + +  + + 
Sbjct: 399 STCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE-EKDV 457

Query: 517 VIWRALLAACRLH 529
           V W  ++A    H
Sbjct: 458 VSWNTMIAGYARH 470



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 163/326 (50%), Gaps = 13/326 (3%)

Query: 23  QALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           + + I G++  +    +ISS + +I+ +  +G   G+ ++R LF  +   +   W  ++ 
Sbjct: 308 KKMVIAGELFEAMPCRNISSWNTMITGYGQNG---GIAQARKLFDMMPQRDCVSWAAIIS 364

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           GY+++   +EAL ++  M   G  S N  TF   L++CA +++ + G Q+H  ++K G E
Sbjct: 365 GYAQNGHYEEALNMFVEMKRDG-ESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFE 423

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
              F+ NAL+  Y   G  + A+ VFEG   +D+VS+NT+I GYA+      AL LF  M
Sbjct: 424 TGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESM 483

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           + + ++PD  T V + SAC+       G ++   + ++   V       T +I++  + G
Sbjct: 484 KKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYN-VKPTSKHYTCMIDLLGRAG 542

Query: 262 LMNMAERVFSTMGMSKSTAAW-----SSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
            +  AE +   M      A+W     +S I G T  G  E+A ++  +M+ ++   +  +
Sbjct: 543 RLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELG--EKAAEMVFKMEPQNSGMYVLL 600

Query: 317 ISGYSQVGGFSQALELFGKMESLGIH 342
            + Y+  G +    ++  KM   G+ 
Sbjct: 601 SNLYAASGRWVDVGKMRSKMREAGVQ 626



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 204/503 (40%), Gaps = 111/503 (22%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS 61
           K+ V+  +++L+       + +A ++  ++ H    + IS + L++ +  +G    L  +
Sbjct: 136 KKDVVSWNAMLSGYAQNGFVDEAREVFNKMPH---RNSISWNGLLAAYVHNG---RLKEA 189

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV----LN 117
           R LF    N  +  WN LM GY + +   +A  L+  M  + ++S N     +     L+
Sbjct: 190 RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249

Query: 118 SCARL------------SSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYIN--- 161
              RL            ++  SG   +  + +    FD + ++N + +   + GY+    
Sbjct: 250 QAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKK 309

Query: 162 ---------------------------------NAHKVFEGSLARDLVSYNTLINGYAQV 188
                                             A K+F+    RD VS+  +I+GYAQ 
Sbjct: 310 MVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQN 369

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---NLGCVGS 245
                AL +F +M+      +  TF    S C ++    +GKQ H  V K     GC   
Sbjct: 370 GHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVG 429

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N LL      MY KCG  + A  VF  +   K   +W++MI+GY R G        F + 
Sbjct: 430 NALL-----GMYFKCGSTDEANDVFEGI-EEKDVVSWNTMIAGYARHG--------FGR- 474

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                 QAL LF  M+  G+ PDE+TMV VL AC   G +D G 
Sbjct: 475 ----------------------QALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRG- 511

Query: 366 RLHQQYIENVVFGRNIFLT----TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
               +Y  ++    N+  T    T +ID+  + G ++ A ++   +P +    S + +++
Sbjct: 512 ---TEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAAS-WGALL 567

Query: 422 SGLAQHG---LGETSIAVFREME 441
                HG   LGE +  +  +ME
Sbjct: 568 GASRIHGNTELGEKAAEMVFKME 590



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 152/320 (47%), Gaps = 26/320 (8%)

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+I+ Y +    ++A  +F  M   +   +W+ M++GY R  ++  A +LFD M ++D+
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMP-ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDV 139

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSW AM+SGY+Q G   +A E+F KM     H + ++   +L A V  G L   +RL + 
Sbjct: 140 VSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGLLAAYVHNGRLKEARRLFES 195

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
                +   N  +       Y K   +  A  +F ++P  ++ V  +N++ISG AQ G  
Sbjct: 196 QSNWELISWNCLMGG-----YVKRNMLGDARQLFDRMP--VRDVISWNTMISGYAQVGDL 248

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490
             +  +F E  +     D  T+  ++      G+V+E +++F+ M    +K ++  Y  M
Sbjct: 249 SQAKRLFNESPIR----DVFTWTAMVSGYVQNGMVDEARKYFDEM---PVKNEIS-YNAM 300

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           +    +  ++  A  L ++MP   N   W  ++      +N  I +   +KL D+ P   
Sbjct: 301 LAGYVQYKKMVIAGELFEAMPC-RNISSWNTMITG--YGQNGGIAQ--ARKLFDMMPQRD 355

Query: 551 -AHYVLLSNMLAETYRWEEA 569
              +  + +  A+   +EEA
Sbjct: 356 CVSWAAIISGYAQNGHYEEA 375


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 357/595 (60%), Gaps = 10/595 (1%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLARDLVSYNTLINGYA 186
           Q H  I+  GL  D  I + L+ F +I       + A  ++       + + N +I  + 
Sbjct: 49  QAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCFV 108

Query: 187 QVKEPCPALWLFRKMQDSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           +   P  ++ L+  M  S +  P+  T   +  AC+     R G Q    V K LG V  
Sbjct: 109 KGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIK-LGFV-K 166

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ ++ A+I++Y  C  +  A++VF  +  S+   +W+SMI G+ R G+I  A++LF +M
Sbjct: 167 DVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEM 226

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            ++D++SW  +ISG  Q G   +AL+ F ++    + P+E  +V++L A   LG L++GK
Sbjct: 227 PEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGK 286

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           R+H     ++ F     L TA++DMYAKCG ID +  +F ++P+  K    +N +I GLA
Sbjct: 287 RIHS-IANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWS--WNVMICGLA 343

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
            HGLG+ ++A+F +    G  P  VTF+ VL ACS  GLV EGK FF+ M + YGI+P+M
Sbjct: 344 THGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEM 403

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHYGCMVDLL+R G + +A  +I  MP   + V+W ++L +C++H   ++GE  G KL+ 
Sbjct: 404 EHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQ 463

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           ++P H  HYV L+ + A   +WE+  +VR+LM +    K  GWS IE  G +HRF+A  K
Sbjct: 464 MDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDK 523

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
            H +T EI  ML+ M +++ +AGY  N   V+ D++EEEKE  +  HSE+LA+AFGL+ +
Sbjct: 524 EHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVT 583

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +  + IRI KNLR+CGDCH   K++S ++ REI+VRD  RFH FKKG CSC D+W
Sbjct: 584 KDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 364/620 (58%), Gaps = 41/620 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHS--GLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S L+ L++CKS+K   QIH  I+ +    +  ++ S  +S             +  L +Q
Sbjct: 24  SFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQ 83

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQ-EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +  PN+ ++N ++RG + S++   E LV+Y  MLSKGIV P+N+T PFVL +CA   + +
Sbjct: 84  LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIV-PDNYTIPFVLKACAESRAVR 142

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++H   IK GL  D+++ N L+  Y++   I +A KVF+ S  RDLVS+ T+I GY 
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           ++      + LF +M    +Q D  T V + S+C  L D R+G++ H  + +N   V  +
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN-SNVNLD 261

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  A+++MY KCG  N A                                R++F +M 
Sbjct: 262 VFVGNALVDMYLKCGDANFA--------------------------------RKVFQEMP 289

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            +++VSW +MISG +Q G F ++L +F KM+ LG+ PD+VT+VAVL +C  LG L+ GK 
Sbjct: 290 VKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKW 349

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H  Y++      + F+  A++DMYAKCGSID A  VF  +  N K V  + ++I GLA 
Sbjct: 350 VHA-YLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM--NRKDVYSYTAMIVGLAM 406

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           HG G  ++ +F EM  MG++PD VTFV VL ACSH GLVEEG+++FE M   Y ++PQ+E
Sbjct: 407 HGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLE 466

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDLL R G ++EA   I++MP + ++ +  ALL AC++H   ++GE   +K+  +
Sbjct: 467 HYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKI 526

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           EP     YVL+SN+ +   RW +A ++RK M +  ++K PG S IE +G +H F    KS
Sbjct: 527 EPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKS 586

Query: 606 HPQTKEIELMLKDMTMKLKS 625
           HP+ KEI  +L ++   LK+
Sbjct: 587 HPKIKEIYKLLDEIMSHLKN 606


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/550 (41%), Positives = 349/550 (63%), Gaps = 10/550 (1%)

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRK--MQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
           ++ +YN L+  ++Q       +  F    +  +   PD +TF ++  AC  L     G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H  V K  GC  SN+ ++ +++++Y K G   +A+++F  M + +   +W+++ISGY  
Sbjct: 149 VHCFVTK-YGC-ESNLFVRNSLVDLYFKVGCNCIAQKLFDEM-VVRDVVSWNTLISGYCF 205

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVA 350
            G +++AR +FD M +++LVSW+ MISGY++   ++ A+ELF +M+   G+ P++VT+V+
Sbjct: 206 SGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVS 265

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC  LGALD GK +H+ +I        +FL  A+ DMYAKCG +  A  VF+++ + 
Sbjct: 266 VLSACAHLGALDLGKWIHR-FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHE- 323

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + V  ++ II GLA +G    +   F EM   GL+P+ ++F+ +L AC+H GLV++G +
Sbjct: 324 -RDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLE 382

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F+ M   YGI P++EHYGC+VDLL+R GRLD+A  LI SMP   N ++W ALL  CR++
Sbjct: 383 YFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIY 442

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           ++A+ GE    ++L+L+ +H    V L+N+ A   R ++A   R  M D+   K PG S+
Sbjct: 443 KDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSW 502

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           IE N +++ F     SHPQ+  I  M++++  K+K AGY P T  V+ ++DEEEKE  +S
Sbjct: 503 IEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALS 562

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSEKLALAFGLIN+    TIRI KNLR+C DCH A K++S+I  REI+VRD  RFH FK
Sbjct: 563 THSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFK 622

Query: 710 KGNCSCMDFW 719
            G CSC D+W
Sbjct: 623 DGKCSCNDYW 632



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 201/438 (45%), Gaps = 71/438 (16%)

Query: 8   HSSLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           H   + LL  C    S++Q  +I  QI+ S +     +   + F  +S     L  S ++
Sbjct: 21  HRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLI 80

Query: 65  FSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARL 122
           F+  +  PNIF +N L++ +S+ ++    +  + + L      +P+ +TF  VL +CA L
Sbjct: 81  FNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGL 140

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL- 181
           +    G ++HC + K+G E +LF+RN+L+  Y   G    A K+F+  + RD+VS+NTL 
Sbjct: 141 AQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLI 200

Query: 182 ------------------------------INGYAQVKEPCPALWLFRKMQ-DSCIQPDA 210
                                         I+GYA+ ++   A+ LFR+MQ +  + P+ 
Sbjct: 201 SGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPND 260

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V++ SAC  L    +GK  H  + +N   VG  + L  A+ +MYAKCG +  A+ VF
Sbjct: 261 VTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVG--LFLGNALADMYAKCGCVLEAKGVF 318

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                            +M +RD++SW+ +I G +  G  ++A 
Sbjct: 319 H--------------------------------EMHERDVISWSIIIMGLAMYGYANEAF 346

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
             F +M   G+ P++++ + +L AC   G +D G        +       I     V+D+
Sbjct: 347 NFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDL 406

Query: 391 YAKCGSIDTALSVFYKIP 408
            ++ G +D A S+   +P
Sbjct: 407 LSRAGRLDQAESLINSMP 424



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + LIS +  SG  +   ++R++F  +   N+  W+T++ GY+R++   +A+ L+  M
Sbjct: 194 VSWNTLISGYCFSGMVD---KARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQM 250

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
             +G ++PN+ T   VL++CA L +   G  IH  I +  +E  LF+ NAL   Y+  G 
Sbjct: 251 QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGC 310

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +  A  VF     RD++S++ +I G A       A   F +M +  ++P+  +F+ + +A
Sbjct: 311 VLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTA 370

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT       G ++  ++ +  G +   +     V+++ ++ G ++ AE + ++M M  + 
Sbjct: 371 CTHAGLVDKGLEYFDMMPQVYG-ITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNV 429

Query: 280 AAWSSMISG---YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
             W +++ G   Y    + ER      ++D     S   + + Y+ +G    A
Sbjct: 430 IVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDA 482


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/705 (34%), Positives = 391/705 (55%), Gaps = 45/705 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           + L+   Q+HG +V +G    + +++ L+  ++  G    +  +  +F ++   ++  WN
Sbjct: 219 RDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLG---DIEMAATVFEKMPAADVVSWN 275

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
             + G         AL L   M S G+V PN FT   VL +CA   +F  G QIH  ++K
Sbjct: 276 AFISGCVTHGHDHRALELLLQMKSSGLV-PNVFTLSSVLKACAGAGAFNLGRQIHGFMVK 334

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              +FD F+   L+  Y+  G++++A KVF+    RDL+ +N LI+G +        L L
Sbjct: 335 AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSL 394

Query: 198 FRKMQDSCIQPDA--FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
           F +M+   +  D    T  ++  +          +Q HA+  K    +G  +L  + VIN
Sbjct: 395 FHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEK----IG--LLSDSHVIN 448

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
                                        +I  Y + G+++ A ++F +    D++S T 
Sbjct: 449 ----------------------------GLIDSYWKCGQLDYAIKVFKESRSDDIISSTT 480

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           M++  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I+  
Sbjct: 481 MMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ 540

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            F  ++F   A++  YAKCGSI+ A   F  +P+  + +  ++++I GLAQHG G+ ++ 
Sbjct: 541 -FTSDVFAGNALVYAYAKCGSIEDADMAFSGLPE--RGIVSWSAMIGGLAQHGHGKRALD 597

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLL 494
           +F  M   G+ P+ +T  +VL AC+H GLV++ K++FESM   +GI    EHY CM+D+L
Sbjct: 598 LFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDIL 657

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G+L++A  L+ +MP+ AN+ +W ALL A R+HR+ ++G +A +KL  LEP+    +V
Sbjct: 658 GRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHV 717

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LL+N  A    W+E  +VRKLM DS ++K P  S++E    +H F+   KSHP T++I  
Sbjct: 718 LLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYG 777

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
            L ++   +  AGYVPN    + DVD  EKE ++S+HSE+LA+AF LI++ S   IR+ K
Sbjct: 778 KLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKK 837

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLRIC DCH+AFK +S+I  REI++RD  RFH F  G CSC D+W
Sbjct: 838 NLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/573 (27%), Positives = 264/573 (46%), Gaps = 59/573 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           S LA   + +SL     +H  ++ SGL    S+  L++ ++     +    +R +F +I 
Sbjct: 9   SALARFGTSRSLFAGAHLHSHLLKSGLLAGFSN-HLLTLYSRCRLPSA---ARAVFDEIP 64

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +P    W++L+  YS +  P++AL+ + +M  +G V  N F  P VL  CA    F  G 
Sbjct: 65  DPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRG-VPCNEFALPVVLK-CAPDVRF--GA 120

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA----RDLVSYNTLINGY 185
           Q+H   +   L  D+F+ NAL+  Y  FG ++ A ++F+  +     R+ VS+NT+I+ Y
Sbjct: 121 QVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAY 180

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            +  +   A+ +FR+M  S  +P+ F F  + +ACT   D   G+Q H  V +       
Sbjct: 181 VKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT--GYEK 238

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++    A+++MY+K G + MA  VF  M  +    +W++ ISG    G   R        
Sbjct: 239 DVFTANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTHGHDHR-------- 289

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                  ALEL  +M+S G+ P+  T+ +VL+AC G GA + G+
Sbjct: 290 -----------------------ALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGR 326

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H  ++   V   + F+   ++DMYAK G +D A  VF  +P+  + + L+N++ISG +
Sbjct: 327 QIH-GFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPR--RDLILWNALISGCS 383

Query: 426 QHGLGETSIAVFREMELMGLKPD--GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             G     +++F  M   GL  D    T  +VL + +    +   +Q        G+   
Sbjct: 384 HDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSD 443

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA--NSVIWRALLAACRLHRNAKIGEIAGQK 541
                 ++D   + G+LD A  + +    D   +S      L+ C  H    I       
Sbjct: 444 SHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCD-HGEDAIKLFVQML 502

Query: 542 LLDLEPDHGAHYVLLS--NMLAETYRWEEARQV 572
              LEPD    +VL S  N       +E+ +QV
Sbjct: 503 RKGLEPD---SFVLSSLLNACTSLSAYEQGKQV 532



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 135/546 (24%), Positives = 248/546 (45%), Gaps = 45/546 (8%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI- 68
           +L  +L+    ++   Q+H   V + L H +  +   +  A+ G    +  +R +F +  
Sbjct: 105 ALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVAN--ALVAVYGGFGMVDEARRMFDEYV 162

Query: 69  ---DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
                 N   WNT++  Y ++D   +A+ ++  M+  G   PN F F  V+N+C      
Sbjct: 163 GVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSG-ERPNEFGFSCVVNACTGSRDL 221

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           ++G Q+H  +++ G E D+F  NAL+  YS  G I  A  VFE   A D+VS+N  I+G 
Sbjct: 222 EAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGC 281

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   AL L  +M+ S + P+ FT  ++  AC       +G+Q H  + K +     
Sbjct: 282 VTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF-- 339

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  +   +++MYAK G ++ A +VF  M   +    W+++ISG + +G+      LF +M
Sbjct: 340 DEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGCSHDGRHGEVLSLFHRM 398

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                        + E L +  +  T+ +VL++     A+   +
Sbjct: 399 -----------------------------RKEGLDLDVNRTTLASVLKSTASSEAICHTR 429

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H    E +    +  +   +ID Y KCG +D A+ VF K  ++   +S   ++++ L+
Sbjct: 430 QVH-ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVF-KESRSDDIIS-STTMMTALS 486

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           Q   GE +I +F +M   GL+PD     ++L AC+     E+GKQ    ++       + 
Sbjct: 487 QCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVF 546

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD- 544
               +V   A+ G +++A      +P +   V W A++     H + K       ++LD 
Sbjct: 547 AGNALVYAYAKCGSIEDADMAFSGLP-ERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDE 605

Query: 545 -LEPDH 549
            + P+H
Sbjct: 606 GVAPNH 611


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/623 (36%), Positives = 370/623 (59%), Gaps = 41/623 (6%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           +L  G ++P    +  ++ +CA+  +      IH H+ +  L  D F+ N+LIH Y   G
Sbjct: 50  LLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCG 109

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            +++A  VF+   +RD+VS+  LI GYAQ   P  A+ L   M  +  +P+ FTF ++  
Sbjct: 110 AVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLK 169

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           A        IG+Q HA+  K       ++ + +A+++MYA+C  M+MA  VF        
Sbjct: 170 ATGACGGCSIGEQMHALAVKY--NWDEDVYVGSALLDMYARCEQMDMAIMVF-------- 219

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
                                   D++  ++ VSW A+I+G+++       L  F +M+ 
Sbjct: 220 ------------------------DRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQR 255

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGS 396
            G      T  ++  A   +GAL+ G+ +H   I++   G+ +  F+   ++ MYAK GS
Sbjct: 256 NGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKS---GQKLTAFVGNTMLGMYAKSGS 312

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  A  VF ++ K  + +  +N++++ LAQ+GLG+ ++A F E+   G++ + +TF++VL
Sbjct: 313 MVDARKVFDRMDK--RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVL 370

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
            ACSHGGLV+EGK +F+ M +Y ++P+++HY   VDLL R G L EA   +  MP +  +
Sbjct: 371 TACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTA 430

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            +W ALL ACR+H+NAK+G+ A   + +L+PD     VLL N+ A T +W +A +VRK+M
Sbjct: 431 AVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMM 490

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
             +G++K P  S+++   ++H F+A   +HP++ +I  M +++ M++K AGYVPNT  V+
Sbjct: 491 KATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVL 550

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
             ++E+E+ET + YHSEK+ALAF LIN  +  +IRI KN+RICGDCH AFK +S++++RE
Sbjct: 551 LHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKRE 610

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD  RFH F +G+CSC D+W
Sbjct: 611 IVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 195/425 (45%), Gaps = 49/425 (11%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFS 66
           + S++A     K+L  A  IH  +  S L      + L++      CK G +  +R +F 
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCL---AGDAFLLNSLIHMYCKCGAVSDARHVFD 119

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++ + ++  W  L+ GY+++  P EA+ L   ML +    PN FTF  +L +        
Sbjct: 120 KMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDML-RARFRPNGFTFTSLLKATGACGGCS 178

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H   +K+  + D+++ +AL+  Y+    ++ A  VF+  ++++ VS+N LI G+A
Sbjct: 179 IGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFA 238

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN----LGC 242
           +  +    L  F +MQ +      FT+ +MFSA   +     G+  HA + K+       
Sbjct: 239 RKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAF 298

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           VG+ ML       MYAK G M  A +VF                                
Sbjct: 299 VGNTML------GMYAKSGSMVDARKVF-------------------------------- 320

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+MD+RDLV+W  M++  +Q G   +A+  F ++   GI  +++T ++VL AC   G + 
Sbjct: 321 DRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVK 380

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK      +++      I    + +D+  + G +  AL   +K+P    T +++ +++ 
Sbjct: 381 EGKHYFDM-MKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPME-PTAAVWGALLG 438

Query: 423 GLAQH 427
               H
Sbjct: 439 ACRMH 443


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/734 (34%), Positives = 398/734 (54%), Gaps = 58/734 (7%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           L ++S++    S    K    +HG+I+ +GL      + L++F+   G    L  +  LF
Sbjct: 226 LTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCG---NLQHASQLF 282

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARLSS 124
            +I   ++  WN ++    +    + AL L+  ML  +  V PN  TF  +L++ + LS+
Sbjct: 283 ERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSA 342

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G +IH HI +  LE D  I N+LI FYS    +  A ++FE  L RD++S+N+++ G
Sbjct: 343 LRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAG 402

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP----RIGKQFHAVVYKNL 240
           Y Q ++      +F++M  S I+PD+ +   +F+A +  +      R GK+ H  + + +
Sbjct: 403 YEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRI 462

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              G ++ +  A++ MYAK                                  +I  A +
Sbjct: 463 TPGGVSLSVSNAILKMYAKFN--------------------------------RIADAEK 490

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +F  M  RD  SW AM+ GYS+   F   L +F  +   G   D V++  +L +C  L +
Sbjct: 491 IFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVS 550

Query: 361 LDFGKRLHQQYIENVVFGRN-------IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           L  GK+ H   +  +  G++       + +  A+I MY+KCGSI  A  VF K+ +  K 
Sbjct: 551 LQLGKQFHA-VVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMER--KD 607

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + ++I+G A HGL   ++ +F  M+  G+KP+ VTF+ +L AC+HGGLV+EG  +F+
Sbjct: 608 VFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFD 667

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEA-----YGLIQSMPYDANSV-IWRALLAAC 526
           SM N YG+ P +EHY CM+DL  R G+ D A     +G+    PY  + + +W+ LL AC
Sbjct: 668 SMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGAC 727

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
              +   +G  A  K+L+LEP+  A Y+LL+N+ A +  WE+A +VRK M D G++K  G
Sbjct: 728 HASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVG 787

Query: 587 WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
            S+I+     H F+A    HPQ KEI   L  +    +  GYVP T  V+ DVDE EKE 
Sbjct: 788 CSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEA 847

Query: 647 VVSYHSEKLALAFGLIN-SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
           ++  HSEKLA++FGL+N       IR+ KNLR+C DCH   K  S + +REI++RD+ RF
Sbjct: 848 ILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRF 907

Query: 706 HLFKKGNCSCMDFW 719
           HLF+ G+CSC D+W
Sbjct: 908 HLFRDGSCSCGDYW 921



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 221/472 (46%), Gaps = 52/472 (11%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           +I +WN+++  Y       E L L+  M+S G+V+P   T+  V+N+C      K G  +
Sbjct: 188 DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMV 247

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  IIK GLE    + N+L+ FY   G + +A ++FE    +D+VS+N +I    Q  E 
Sbjct: 248 HGRIIKAGLE-ATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEG 306

Query: 192 CPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
             AL LFR+M   +  +QP+  TF+++ SA + L+  R G++ HA +++    V ++  +
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTS--I 364

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++I  Y+KC  +  A  +F  + + +   +W+SM++GY             +Q +Q+ 
Sbjct: 365 TNSLITFYSKCREVGKAREIFERL-LLRDIISWNSMLAGY-------------EQNEQQ- 409

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC----VGLGALDFGK 365
                             +  ++F +M   GI PD  ++  +  A      GL     GK
Sbjct: 410 -----------------GRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGK 452

Query: 366 RLHQQYIENVVFGR-NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            +H   +  +  G  ++ ++ A++ MYAK   I  A  +F K  KN  + S +N+++ G 
Sbjct: 453 EIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIF-KGMKNRDSYS-WNAMMDGY 510

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF---FESMLNYGIK 481
           +++   E  + +F ++   G   D V+   +L +C     ++ GKQF      + N    
Sbjct: 511 SRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDC 570

Query: 482 PQMEHY----GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           P  +        ++ + ++ G + +A  +   M    +   W A++  C  H
Sbjct: 571 PHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERK-DVFSWTAMITGCAHH 621



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/521 (24%), Positives = 229/521 (43%), Gaps = 62/521 (11%)

Query: 36  LNHHISSSQLISFFALSGCKNGLFR---------SRILFSQIDNPNIFIWNTLMRGYSRS 86
             +H  SSQ I  F  S C   L           ++ LF    N ++  W+ L+  YSR 
Sbjct: 42  FQNHGFSSQFI--FRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRC 99

Query: 87  DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
            +  +A  L+  M+ +G+  PN F+   +L             Q+H   I+ G   D  I
Sbjct: 100 GNFAQAFGLFQKMMGEGL-QPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGI 158

Query: 147 RNALIHFYSIFGYINNAHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRKMQD- 203
           R A I  YS  G + +A +VF+ +  LA D++ +N++I  Y         L LF KM   
Sbjct: 159 RAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSV 218

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
             + P   T+ ++ +AC    + + G   H  + K  G   +N  L  +++  Y KCG +
Sbjct: 219 GVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKA-GLEATN--LWNSLVTFYGKCGNL 275

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
             A ++F  +   K   +W++MI+   + G+ E A  LF +M                  
Sbjct: 276 QHASQLFERIS-RKDVVSWNAMIAANEQRGEGENALGLFRRML----------------- 317

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
                      K+E   + P+ VT +++L A  GL AL  G+ +H  +I  +    +  +
Sbjct: 318 -----------KVEP-PVQPNRVTFLSLLSAVSGLSALRCGREIH-AHIFRLSLEVDTSI 364

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
           T ++I  Y+KC  +  A  +F ++   L+ +  +NS+++G  Q+        +F+ M L 
Sbjct: 365 TNSLITFYSKCREVGKAREIFERLL--LRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLS 422

Query: 444 GLKPDGVTFVTVLCACSH--GGLV--EEGKQFFESMLNYGIKP---QMEHYGCMVDLLAR 496
           G++PD  +   +  A S    GL+    GK+    +L   I P    +     ++ + A+
Sbjct: 423 GIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRR-ITPGGVSLSVSNAILKMYAK 481

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
             R+ +A  + + M  + +S  W A++      RNAK  ++
Sbjct: 482 FNRIADAEKIFKGMK-NRDSYSWNAMMDG--YSRNAKFEDV 519



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 5/293 (1%)

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           FS+  + + +A    ++S    E +++ A+QLFD    RD++SW+A+I+ YS+ G F+QA
Sbjct: 47  FSSQFIFRCSACSKFLVSQSEHE-RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQA 105

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
             LF KM   G+ P+  ++ ++L+     G +   ++LH   I    FG +  +  A I 
Sbjct: 106 FGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIR-TGFGLDSGIRAAWIT 164

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPD 448
           MY++CG ++ A  VF +       + L+NSII+    HG     + +F +M  +G + P 
Sbjct: 165 MYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPT 224

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            +T+ +V+ AC   G  + G      ++  G++     +  +V    + G L  A  L +
Sbjct: 225 ELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEA-TNLWNSLVTFYGKCGNLQHASQLFE 283

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
            +    + V W A++AA       +      +++L +EP    + V   ++L+
Sbjct: 284 RISRK-DVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLS 335


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/591 (40%), Positives = 363/591 (61%), Gaps = 11/591 (1%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH  + + GL+    +   L   Y+  G ++ +  +F  +    +  +  +I+G+A   
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL  + +M    ++P+AFTF ++   C    +P  GK  H+   K LG   S++ +
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCPI--EP--GKALHSQAVK-LG-FDSDLYV 161

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +T ++++YA+ G +  A+++F TM   KS  + ++M++ Y + G+++ AR LFD M++RD
Sbjct: 162 RTGLLDVYARGGDVVSAQQLFDTMP-EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 220

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            V W  MI GY+Q G  ++AL LF +M      P+EVT+++VL AC  LGAL+ G+ +H 
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 280

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            YIEN     N+ + TA++DMY+KCGS++ A  VF KI    K V  +NS+I G A HG 
Sbjct: 281 -YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD--KDVVAWNSMIVGYAMHGF 337

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
            + ++ +F+ M  MGL P  +TF+ +L AC H G V EG   F  M + YGI+P++EHYG
Sbjct: 338 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 397

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMV+LL R G +++AY L+++M  + + V+W  LL ACRLH    +GE   + L+D    
Sbjct: 398 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 457

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +   Y+LLSN+ A    W+   ++R +M DSG++K PG S IE N  +H FLA   +HP+
Sbjct: 458 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 517

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
            KEI +ML+++   LKS GY P T  V+ D+ E EKE  +  HSEKLA+AFGLIN++   
Sbjct: 518 RKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGT 577

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           TI+I KNLR+C DCH   KL+S+I  R+I+VRD  RFH F  G+CSC D+W
Sbjct: 578 TIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 219/499 (43%), Gaps = 110/499 (22%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L  L++  K++   LQIH  +   GL+HH I + +L   +A  G    L  S  LF +  
Sbjct: 33  LAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLG---RLDYSVALFGRTQ 89

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           NP++F W  ++ G++     ++AL  Y  ML++G V PN FTF  +L  C      + G 
Sbjct: 90  NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG-VEPNAFTFSSILKLCP----IEPGK 144

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYS----------IF---------------------G 158
            +H   +K G + DL++R  L+  Y+          +F                     G
Sbjct: 145 ALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHG 204

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            ++ A  +F+G   RD V +N +I+GY Q   P  AL LFR+M  +  +P+  T +++ S
Sbjct: 205 ELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 264

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC +L     G+  H+ +  N   +  N+ + TA+++MY+KCG +  A  VF  +   K 
Sbjct: 265 ACGQLGALESGRWVHSYIENN--GIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKD 321

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             AW+SMI GY                           + G+SQ     +AL+LF  M  
Sbjct: 322 VVAWNSMIVGYA--------------------------MHGFSQ-----EALQLFKSMCR 350

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           +G+HP  +T + +L AC   G +  G  +  +  +       I     ++++  + G ++
Sbjct: 351 MGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVE 410

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A    Y++ KN                                M ++PD V + T+L A
Sbjct: 411 QA----YELVKN--------------------------------MNIEPDPVLWGTLLGA 434

Query: 459 CSHGGLVEEGKQFFESMLN 477
           C   G +  G++  E +++
Sbjct: 435 CRLHGKIALGEKIVELLVD 453



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 147/308 (47%), Gaps = 8/308 (2%)

Query: 40  ISSSQLISFFALSGC--KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           +    L+S  A+  C  K+G L  +R+LF  ++  +   WN ++ GY+++  P EALVL+
Sbjct: 185 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 244

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             ML K    PN  T   VL++C +L + +SG  +H +I   G++F++ +  AL+  YS 
Sbjct: 245 RRML-KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 303

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VF+    +D+V++N++I GYA       AL LF+ M    + P   TF+ +
Sbjct: 304 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGI 363

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC        G      +    G +   +     ++N+  + G +  A  +   M + 
Sbjct: 364 LSACGHSGWVTEGWDIFNKMKDEYG-IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE 422

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV---SWTAMISGYSQVGGFSQALELF 333
                W +++      GKI    ++ + +  ++L    ++  + + Y+ VG +     L 
Sbjct: 423 PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLR 482

Query: 334 GKMESLGI 341
             M+  G+
Sbjct: 483 TMMKDSGV 490


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/723 (34%), Positives = 405/723 (56%), Gaps = 48/723 (6%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFR 60
           +RL     S  ++L   K LK   QIH QI+ SGL H+   S+ L++ +   G    L  
Sbjct: 18  QRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGL---LAD 74

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           ++ +F      N+  W  L+ G +++D   EA+ ++  M + G   PN  T   VL + A
Sbjct: 75  AKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREM-TMGNFKPNAVTISSVLPAFA 133

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L   +    +HC  ++ G E ++F+  AL+  YS FG +  A ++FE    R++VS+N 
Sbjct: 134 NLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNA 193

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +++GY+       A+ LF  M+   +  D +T +++  A   +   ++G   H  + +  
Sbjct: 194 IVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT- 252

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
               ++  +KTA++++Y     ++ A RVFS                             
Sbjct: 253 -GYENDKHIKTALMDIYVSHNCVDDAHRVFS----------------------------- 282

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP---DEVTMVAVLRACVG 357
              +M  +D+ +WT M++G+S    + +A++ F KM  LGI     D + ++ +L +C  
Sbjct: 283 ---EMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM--LGIQNLKLDSIVLMGILSSCSH 337

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
            GAL  G+R+H   I+   F  NIF+ +AVIDMYA CG+++ A   FY + +  K V  +
Sbjct: 338 SGALQQGRRVHALAIK-TCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE--KDVVCW 394

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           N++I+G   +G G  +I +F +M+  GL PD  TFV+VL ACSH G+V EG Q F  M+ 
Sbjct: 395 NAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVK 454

Query: 478 YGIK-PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
                P ++HY C++D+L R G+LD AY  I +MP+  +  ++  LL ACR+H N K+G 
Sbjct: 455 TSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGH 514

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
              QK+ ++EP+   +YVLLSNM A    WE  +  R  +    ++K PG+S IE N  +
Sbjct: 515 EISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEI 574

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           + F+A +K HPQ  +IE +LK + +K+K AGYVPNT  ++ DV ++ K+ ++ +HSEK+A
Sbjct: 575 YTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMA 634

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGL+ ++    IRITKNLR C DCH A K +S+++ R ++++DA RFH+F+ G CSC 
Sbjct: 635 IAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCR 694

Query: 717 DFW 719
           D+W
Sbjct: 695 DYW 697


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/543 (41%), Positives = 328/543 (60%), Gaps = 38/543 (6%)

Query: 178 YNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           YN+LI          PAL ++R+M +    +P++FT      AC  +  P  G+Q HA  
Sbjct: 143 YNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQA 201

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +    + ++  ++T ++N+YAKC  + +A  VF  M   K                   
Sbjct: 202 LRQ--GLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDK------------------- 240

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                       +LV+W+AM+SGYS+VG  ++AL LF +M+++G+ PDEVTMV+V+ AC 
Sbjct: 241 ------------NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACA 288

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             GALD GK +H  YI+      ++ L+TA+IDMYAKCG I+ A  VF  + +  K    
Sbjct: 289 KAGALDLGKWVHA-YIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVE--KDTKA 345

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           ++++I G A HGL E ++ +F  M  + ++P+ VTF+ VL AC+H GLVE+G++++  M 
Sbjct: 346 WSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQ 405

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           N GIKP ME+YGCMVDLL R G LD+AY  +  MP   NSVIWR LL AC+      I E
Sbjct: 406 NLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAE 465

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A ++LL+LEP +  +YVLLSN+ A   +W+    +R+ M    +    G S IE NG L
Sbjct: 466 SATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHL 525

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F+ S  SHP+ +EI L+L++M  +++ AG+ P T  V+ DV EEEKE  +  HSE+LA
Sbjct: 526 HEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLA 585

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +A+GL+ +R+   IR+ KNLR C DCH   K++S+ Y REI+VRD +RFH F  G+CSC 
Sbjct: 586 IAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCK 645

Query: 717 DFW 719
           DFW
Sbjct: 646 DFW 648



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 196/398 (49%), Gaps = 37/398 (9%)

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R LF QI +P  F +N+L+R    + S   AL +Y  ML  G   PN+FT  F L +CA 
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLVSYNT 180
           + +   G Q+H   ++ GL    +++  L++ Y+    +  A  VF+G    ++LV+++ 
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +++GY++V     AL LFR+MQ   ++PD  T V++ SAC +     +GK  HA  Y + 
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHA--YIDR 305

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +  ++ L TA+I+MYAKCGL+  A  VF  M + K T AWS+MI G+   G +E    
Sbjct: 306 KGITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVE---- 360

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                       AL LF +M  L + P+ VT + VL AC   G 
Sbjct: 361 ---------------------------DALGLFSRMLELKVRPNNVTFIGVLSACAHSGL 393

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G+R +   ++N+    ++     ++D+  + G +D A S    +P +  +V     +
Sbjct: 394 VEDGRR-YWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLL 452

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           ++  + + +     A  R +EL    P+    ++ L A
Sbjct: 453 VACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYA 490



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 142/288 (49%), Gaps = 9/288 (3%)

Query: 15  LESCKSLK---QALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++C ++    +  Q+H Q +  GL       + L++ +A   C+       +      +
Sbjct: 182 LKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYA--KCEQVALARTVFDGMAGD 239

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            N+  W+ ++ GYSR     EAL L+  M + G V P+  T   V+++CA+  +   G  
Sbjct: 240 KNLVAWSAMVSGYSRVGMVNEALGLFREMQAVG-VEPDEVTMVSVISACAKAGALDLGKW 298

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H +I + G+  DL +  ALI  Y+  G I  A  VF+  + +D  +++ +I G+A    
Sbjct: 299 VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGL 358

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF +M +  ++P+  TF+ + SAC        G+++ +++ +NLG +  +M   
Sbjct: 359 VEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLG-IKPSMENY 416

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
             ++++  + GL++ A      M +S ++  W +++       +I+ A
Sbjct: 417 GCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIA 464



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACS 460
           ++F +IP    T   +NS+I  L   G    ++AV+R M   G  +P+  T    L AC+
Sbjct: 130 NLFDQIPD--PTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACA 186

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
                 EG+Q     L  G+         +++L A+  ++  A  +   M  D N V W 
Sbjct: 187 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 246

Query: 521 ALLAA-CRLHR-NAKIGEIAGQKLLDLEPD 548
           A+++   R+   N  +G     + + +EPD
Sbjct: 247 AMVSGYSRVGMVNEALGLFREMQAVGVEPD 276


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/629 (38%), Positives = 377/629 (59%), Gaps = 24/629 (3%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI---L 64
           H +L  L++ C SLKQ   +H QI+  GL     ++Q+++   L      L   R    L
Sbjct: 36  HQTLHYLIDQCISLKQLKHVHAQIILHGL-----ATQVLTLGKLVSSSVQLRDLRYAHKL 90

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F QI  PN F++N L++GYS S  P ++L+LY  M+  GI+ PN FT PFVL +CA  S 
Sbjct: 91  FDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGIL-PNQFTIPFVLKACAAKSC 149

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
           +  G  +H    K G+     ++NA+++ Y   G I +A +VF+    R LVS+N++ING
Sbjct: 150 YWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMING 209

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y+++     A+ +FR+MQ+  ++PD FT V + S  T+  +  +G+  H  ++  +  + 
Sbjct: 210 YSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVH--LHMVVTGIE 267

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            + ++  A+++MYAKCG +  A+ VF  M + K   +W+ MI+ Y   G I+ A + F+Q
Sbjct: 268 IDSIVTNALMDMYAKCGNLKCAKSVFDQM-LDKDVVSWTCMINAYANHGLIDCALEFFNQ 326

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  +++VSW ++I  + Q G +++A++LF +M   G+  ++ T+VA+L +C  +G L  G
Sbjct: 327 MPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALG 386

Query: 365 KRLHQQYIENVVFGRNIFLTT----AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           K+ H     + +F  NI L+     A+IDMYAKCG++ TA+ VF+ +P+  K    +N I
Sbjct: 387 KQAH-----SYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE--KNAVSWNVI 439

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYG 479
           I  LA HG G+ +I +F +M+  G+ PD +TF  +L ACSH GLV+ G+ +FE M L +G
Sbjct: 440 IGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFG 499

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I P +EHY CMVDLL R G L EA  LI+ MP   + V+W ALL ACR + N  IG+   
Sbjct: 500 ISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIM 559

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           ++LL+L   +   YVLLSNM +E+ RW++ + + K++D +GI+K    S+IE +G  ++F
Sbjct: 560 KQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQF 619

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGY 628
           +   K H  +  I  ML  +   LKSAGY
Sbjct: 620 MVDDKRHGASTSIYSMLGQLMDHLKSAGY 648


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/697 (36%), Positives = 388/697 (55%), Gaps = 58/697 (8%)

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGY-------------------------------SRSD 87
           F SR LFSQI+ P IF  N+++ GY                               S+S 
Sbjct: 191 FASR-LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
             +EAL L   M  KG V  ++ T+   L +CARL S   G Q+H  +I+   + D ++ 
Sbjct: 250 RVREALGLVVEMHRKG-VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           +ALI  Y+  G    A +VF     R+ VS+  LI G  Q +    ++ LF +M+   + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN--MLLKTAVINMYAKCGLMNM 265
            D F    + S C    D  +G+Q H++  K+    G N  +++  ++I++YAKCG +  
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKS----GHNRAIVVSNSLISLYAKCGDLQN 424

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           AE VFS+M   +   +W+SMI+ Y++ G I +AR+ FD MD R+ ++W AM+  Y Q G 
Sbjct: 425 AEFVFSSMS-ERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGA 483

Query: 326 FSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
               L+++  M S   + PD VT V + R C  +GA   G ++    ++  +   N+ + 
Sbjct: 484 EEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVA 542

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A I MY+KCG I  A  +F  +  N K V  +N++I+G +QHG+G+ +   F +M   G
Sbjct: 543 NAAITMYSKCGRISEAQKLFDLL--NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKG 600

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            KPD +++V VL  CSH GLV+EGK +F+ M   +GI P +EH+ CMVDLL R G L EA
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEA 660

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-PDHGAHYVLLSNMLAE 562
             LI  MP    + +W ALL+AC++H N ++ E+A + + +L+ PD G+ Y+LL+ + ++
Sbjct: 661 KDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGS-YMLLAKIYSD 719

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             + +++ QVRKLM D GI+K PG+S++E    +H F A   SHPQ   I   L ++  K
Sbjct: 720 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEK 779

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +   GYV           E  +  +  +HSEKLA+AFG+++  +   I I KNLRICGDC
Sbjct: 780 IAHLGYVRT---------ESPRSEI--HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDC 828

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H   KL+S +  RE ++RD +RFH FK G+CSC D+W
Sbjct: 829 HTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 210/444 (47%), Gaps = 40/444 (9%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF------- 167
            L SC    +      +H  ++  GL   +F++N L+H Y   G +++A ++        
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 168 --------------EGSLA-----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
                         +GSL+           RD+ S+NTL++GY Q +     L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 203 DSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            S    P+AFTF  +  +C  L    +  Q   + +K       +  ++TA+++M+ +CG
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFD--FWGDPDVETALVDMFVRCG 187

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            ++ A R+FS +    +    +SM++GY +   I+ A + F+ M +RD+VSW  MI+  S
Sbjct: 188 YVDFASRLFSQI-ERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G   +AL L  +M   G+  D  T  + L AC  L +L +GK+LH + I ++    + 
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP-QIDP 305

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++ +A+I++YAKCGS   A  VF  + ++  +VS +  +I G  Q+     S+ +F +M 
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSL-QDRNSVS-WTVLIGGSLQYECFSKSVELFNQMR 363

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
              +  D     T++  C +   +  G+Q     L  G    +     ++ L A+ G L 
Sbjct: 364 AELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 502 EAYGLIQSMPYDANSVIWRALLAA 525
            A  +  SM  + + V W +++ A
Sbjct: 424 NAEFVFSSMS-ERDIVSWTSMITA 446



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 127/560 (22%), Positives = 234/560 (41%), Gaps = 105/560 (18%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNTLM GY ++    + L  + SM   G   PN FTF  V+ SC  L 
Sbjct: 93  LFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152

Query: 124 SFKSGCQ------------------------IHCHIIKFGLEF-------DLFIRNALIH 152
             +   Q                        + C  + F            +F RN+++ 
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLA 212

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y+    I++A + FE    RD+VS+N +I   +Q      AL L  +M    ++ D+ T
Sbjct: 213 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 272

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +  +AC  L     GKQ HA V ++L  +  +  + +A+I +YAKCG    A+RVF++
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQI--DPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +   +++ +W+ +I G                                 Q   FS+++EL
Sbjct: 331 L-QDRNSVSWTVLIGGSL-------------------------------QYECFSKSVEL 358

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M +  +  D+  +  ++  C     L  G++LH   +++    R I ++ ++I +YA
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS-GHNRAIVVSNSLISLYA 417

Query: 393 KCGSIDTALSVFYKIPK-----------------------------NLKTVSLFNSIISG 423
           KCG +  A  VF  + +                             + +    +N+++  
Sbjct: 418 KCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGA 477

Query: 424 LAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             QHG  E  + ++  M     + PD VT+VT+   C+  G  + G Q     +  G+  
Sbjct: 478 YIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLIL 537

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
            +      + + ++ GR+ EA  L   +    + V W A++     H    +G+ A +  
Sbjct: 538 NVSVANAAITMYSKCGRISEAQKLFDLLN-GKDVVSWNAMITGYSQH---GMGKQAAKTF 593

Query: 543 LDL-----EPDHGAHYVLLS 557
            D+     +PD+ ++  +LS
Sbjct: 594 DDMLSKGAKPDYISYVAVLS 613



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 167/345 (48%), Gaps = 16/345 (4%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFR 60
           R ++  +SL++L   C  L+ A     + V S ++    +S + +I+ ++  G    + +
Sbjct: 404 RAIVVSNSLISLYAKCGDLQNA-----EFVFSSMSERDIVSWTSMITAYSQIG---NIIK 455

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F  +D  N   WN ++  Y +  + ++ L +Y++MLS+  V+P+  T+  +   CA
Sbjct: 456 AREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 515

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + + K G QI  H +K GL  ++ + NA I  YS  G I+ A K+F+    +D+VS+N 
Sbjct: 516 DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNA 575

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GY+Q      A   F  M     +PD  ++VA+ S C+     + GK +  ++ +  
Sbjct: 576 MITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVH 635

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---- 296
           G +   +   + ++++  + G +  A+ +   M M  +   W +++S     G  E    
Sbjct: 636 G-ISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAEL 694

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            A+ +F ++D  D  S+  +   YS  G    + ++   M   GI
Sbjct: 695 AAKHVF-ELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 380/621 (61%), Gaps = 13/621 (2%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLI-SFFALSGCKN--GLFRSRILFS 66
           +L LL+ C+S++   Q+H  ++  G +   S   QL+ S+ ALSG      L  +R +F 
Sbjct: 6   VLELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFD 65

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++ +P+ F +N+L+R YS S  PQEAL L+  +L +GI+ PN FT PFVL +C+R  + +
Sbjct: 66  RVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGIL-PNEFTLPFVLKACSRARAAE 124

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGY 185
                H   IK G    +F+ NAL+H  +  G + ++ ++F E +  R++VS+NT+I G 
Sbjct: 125 HALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGC 184

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ  E   A  LFR+M+   +  D FTFV++   C++  +  +G+  H  +  +   V  
Sbjct: 185 AQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRV-- 242

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +++L  A+++MY KCG + MA R F  M + K+  +W+SM+    + G ++ AR  F+QM
Sbjct: 243 DLILGNALVDMYGKCGDLWMAHRCFDVMPI-KNVVSWTSMLCALAKHGSVDAARDWFEQM 301

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            +R+++SW AMIS Y Q G F + L L+ +M+SLG+ PDEVT+  VL      G L  G+
Sbjct: 302 PERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGR 361

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H  YI++      + +  ++IDMYA+CG +DT++S+F ++P N  T+S +N II  LA
Sbjct: 362 MIHC-YIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMP-NKNTIS-WNVIIGALA 418

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
            HG  + ++  FR M      PD +TFV +L ACSHGGL+E+G+ +F++M + Y +KP++
Sbjct: 419 MHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEV 478

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY CMVDLL R G L +A  LI+ MP   + V+W AL+ ACR+H + +IG++A ++LL+
Sbjct: 479 EHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLE 538

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           LE  +G  +VL+SN+L ET +WE+ +++RKLM D G +K  G S IE N ++H F     
Sbjct: 539 LEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDI 598

Query: 605 SHPQTKEIELMLKDMTMKLKS 625
            H  + +I   +  +   L S
Sbjct: 599 RHESSSQIYAAVDQLAYHLVS 619


>gi|357143516|ref|XP_003572948.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Brachypodium distachyon]
          Length = 791

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/583 (42%), Positives = 347/583 (59%), Gaps = 25/583 (4%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           PN+ +    L +C+R +S   G  IH  ++K G   DLF  N+L+HFY+ FG  + + K+
Sbjct: 97  PNSHSLSAALAACSRYASPSPGLSIHAFLLKSGYASDLFAANSLLHFYASFGQPSLSRKL 156

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           F+  LARD VS+NTLI  Y  V+  C   A  +FR M +   + D ++  A+F AC  L 
Sbjct: 157 FDEMLARDAVSFNTLIKSY--VRSCCVDDAFGIFRVMVERGFRFDWWSIKALFGACAGLG 214

Query: 225 DPRIGKQFHAVVYKNLGC--VGSNMLLKTAVINMYAKCGLMNMAERVFSTMG-MSKSTAA 281
           D R  K  H V  + L      S  ++   +++MY KC  + +A +VF   G  ++    
Sbjct: 215 DLRAAKAMHGVAKRALPPEEFDSGQVV-IGLVDMYVKCRGLALARQVFDLAGEKARDVKL 273

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           WS+M+SGY R G++  AR LFD M ++DLV+WT +I G+ Q G +  AL LF +ME  G 
Sbjct: 274 WSAMLSGYARSGEVRTARDLFDGMPEKDLVAWTVLIGGFVQAGRYKDALVLFEEMEEAGF 333

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
             DEVT+V +L ACV  G +D  KRLH +   + +  RN  L T+ +DMYAK G I TA+
Sbjct: 334 EADEVTVVTLLSACVHYGKIDVAKRLHHRARHHGLISRNARLATSFVDMYAKHGCIQTAM 393

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF  +    KTV LFN++I+GLA   LGE +IA+F  M  +GL PD +TF  VLCACS 
Sbjct: 394 DVFCSVGDEFKTVHLFNAMINGLAHRSLGEKAIALFDSMGSLGLHPDKITFTAVLCACSR 453

Query: 462 GGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            GLV  G + F+SM+  YG++  M+HY CM DLLARDGRL +AY  IQ+MP+ ANSV+W 
Sbjct: 454 SGLVSRGFEIFDSMVGKYGVEKDMKHYACMADLLARDGRLGDAYHFIQNMPFKANSVVWS 513

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           +LL ACR+HRN KIG++A ++LL  +P +    +LLS+  ++  R E A +VRK +    
Sbjct: 514 SLLRACRIHRNLKIGKLAEEQLLQFDPSYKPEKLLLSDSFSDGKRKEMATRVRKAIKHRP 573

Query: 581 IQKPPGWSYIEHNGTLHRFLASK-KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
             +   +SYIE NG +H+F  +   SHPQ K I LML+DM+ +L  +G+           
Sbjct: 574 EHRHTKYSYIEWNGNVHQFATTTGTSHPQAKVIGLMLEDMSRQLSFSGH----------- 622

Query: 640 DEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           D  +++TV    SE +ALAFGL   R K+    T  L++   C
Sbjct: 623 DMSKEKTVC--RSEMVALAFGL--ERHKDNALKTYVLKVNMHC 661


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/702 (36%), Positives = 405/702 (57%), Gaps = 16/702 (2%)

Query: 23   QALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
            +  Q+HG +V +G L      + L+ F+   G    ++ ++ LF ++ + N+  W +LM 
Sbjct: 393  EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGL---VYNAQKLFEEMPDHNVVSWTSLMV 449

Query: 82   GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
            GYS S +P E L +Y  M  +G VS N  TF  V +SC  L     G Q+  HII++G E
Sbjct: 450  GYSDSGNPGEVLNVYQRMRQEG-VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFE 508

Query: 142  FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
              + + N+LI  +S F  +  A  VF+     D++S+N +I+ YA       +L  F  M
Sbjct: 509  DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 568

Query: 202  QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            +    + ++ T  ++ S C+ +++ + G+  H +V K LG + SN+ +   ++ +Y++ G
Sbjct: 569  RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK-LG-LDSNVCICNTLLTLYSEAG 626

Query: 262  LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---QMDQRDLVSWTAMIS 318
                AE VF  M   +   +W+SM++ Y ++GK     ++     QM + D V+W A+I 
Sbjct: 627  RSEDAELVFQAM-TERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIG 685

Query: 319  GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
            G+++    ++A++ +  +   GI  + +TMV+ L A   L  L+ G++LH   I+ + F 
Sbjct: 686  GHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIK-LGFE 743

Query: 379  RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             ++ +T A +DMY KCG +   L +  + P N   +S +N +IS  A+HG  + +   F 
Sbjct: 744  SDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLS-WNILISAFARHGCFQKARETFH 801

Query: 439  EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARD 497
            EM  +G KPD VTFV++L AC+HGGLV+EG  +++SM   +G+ P +EH  C++DLL R 
Sbjct: 802  EMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRS 861

Query: 498  GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
            GRL  A G I+ MP   N + WR+LLAACR+H N ++     + LL+L+P   + YVL S
Sbjct: 862  GRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYS 921

Query: 558  NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
            N+ A + +WE+   +RK M  + I+K P  S+++    +H F   +K HPQ   I   L 
Sbjct: 922  NVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLG 981

Query: 618  DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
            ++    K AGYVP+T   + D+DEE+KE  +  HSE+LALAFGLIN+    T+RI KNLR
Sbjct: 982  ELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLR 1041

Query: 678  ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +CGDCH  +K +S I  R+I++RD  RFH F  G CSC D+W
Sbjct: 1042 VCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 139/579 (24%), Positives = 258/579 (44%), Gaps = 106/579 (18%)

Query: 6   LEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS 61
           L+ S  L +L+ C   K+ KQ   IH  ++ +G    +  +++LI F+   G    +  +
Sbjct: 28  LDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVG---DVIAA 84

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R +F  +   ++  W  ++ GYS++   ++A VL++ M   G+ +               
Sbjct: 85  RNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKA--------------- 129

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
                                     +AL+ F+S  G + +A  +F   + RD+VS+N +
Sbjct: 130 -------------------------NHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 164

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV----- 236
           I GYA       +  +FR M    + PD +T  ++  A  E     I  Q H ++     
Sbjct: 165 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGY 224

Query: 237 -------------YKNLGCVGS------NMLLK---------------------TAVINM 256
                        Y   G + S       ML K                      A+I+M
Sbjct: 225 GSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDM 284

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG--KIERARQLFDQMDQRDLVSWT 314
           YAK G +  A+R F  M   K+  +W+S+ISGY + G   +  AR +FD+M  R+  SW+
Sbjct: 285 YAKSGEIEDAKRAFDEM-EEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWS 343

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL-DFGKRLHQQYIE 373
            M+SGY +VG + +A+ LF +M  LG+ P+   + +++ AC   G + D G ++H   ++
Sbjct: 344 TMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 403

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
             + G ++++ TA++  Y   G +  A  +F ++P +   V  + S++ G +  G     
Sbjct: 404 TGILG-DVYVGTALVHFYGSIGLVYNAQKLFEEMPDH--NVVSWTSLMVGYSDSGNPGEV 460

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKPQMEHYGCM 490
           + V++ M   G+  +  TF TV  +C   GL+E+   G Q    ++ YG +  +     +
Sbjct: 461 LNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 517

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + + +    ++EA  +   M  + + + W A+++A   H
Sbjct: 518 ISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHH 555


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/666 (36%), Positives = 367/666 (55%), Gaps = 53/666 (7%)

Query: 97  TSMLSKGIVSPNNFTFPF-----VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151
            S + K +VSP N          VL+    + + K+   +H  +       +  +   L+
Sbjct: 18  VSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKN---VHSKVFNLSFHENPSLGIKLM 74

Query: 152 HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAF 211
             Y+  G    A  VF+    R+++ YN +I  Y        AL +FR M      PD +
Sbjct: 75  RAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHY 134

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T+  +  AC+  ++ RIG Q H  V+K +G +  N+ +   +I +Y KCG +  A  V  
Sbjct: 135 TYPCVLKACSCSDNLRIGLQLHGAVFK-VG-LDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERA--------------------------------- 298
            M  SK   +W+SM++GY +  + + A                                 
Sbjct: 193 EM-QSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSEN 251

Query: 299 ----RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
                ++F  ++++ LVSW  MIS Y +     ++++L+ +M    + PD +T  +VLRA
Sbjct: 252 VLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRA 311

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  L AL  G+R+H+ Y+E      N+ L  ++IDMYA+CG ++ A  VF ++    + V
Sbjct: 312 CGDLSALLLGRRIHE-YVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRM--KFRDV 368

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
           + + S+IS     G G  ++A+F EM+  G  PD + FV +L ACSH GL+ EGK +F+ 
Sbjct: 369 ASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQ 428

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M + Y I P +EH+ C+VDLL R GR+DEAY +I+ MP   N  +W ALL++CR++ N  
Sbjct: 429 MTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMD 488

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           IG +A  KLL L P+   +YVLLSN+ A+  RW E   +R LM    I+K PG S +E N
Sbjct: 489 IGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELN 548

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H FLA    HPQ+KEI   L  +  K+K  GYVP T   + DV+EE+KE  ++ HSE
Sbjct: 549 NQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSE 608

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+ F ++N++ +  IRITKNLR+CGDCH+A KL+S+I +REI++RD  RFH FK G C
Sbjct: 609 KLAIVFAILNTQ-ESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGIC 667

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 668 SCGDYW 673



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 216/442 (48%), Gaps = 45/442 (10%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSR 62
           LVLE   L  +L+    +K    +H ++ +   + + S   +L+  +A  G + GL R+ 
Sbjct: 33  LVLE--LLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARG-EPGLARN- 88

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F  I   N+  +N ++R Y  +    +AL+++  M+S G  SP+++T+P VL +C+  
Sbjct: 89  -VFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGF-SPDHYTYPCVLKACSCS 146

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            + + G Q+H  + K GL+ +LF+ N LI  Y   G +  A  V +   ++D+VS+N+++
Sbjct: 147 DNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMV 206

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVYKN 239
            GYAQ  +   AL + R+M     +PDA T  ++  A T  +      + + F  +  K+
Sbjct: 207 AGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKS 266

Query: 240 LGCVGSNMLLKTAV--------INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG--- 288
           L  V  N+++   +        +++Y + G   +     +   + ++    S+++ G   
Sbjct: 267 L--VSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRI 324

Query: 289 ----------------------YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                                 Y R G +E A+++FD+M  RD+ SWT++IS Y   G  
Sbjct: 325 HEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQG 384

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
             A+ LF +M++ G  PD +  VA+L AC   G L+ GK   +Q  ++      I     
Sbjct: 385 YNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFAC 444

Query: 387 VIDMYAKCGSIDTALSVFYKIP 408
           ++D+  + G +D A ++  ++P
Sbjct: 445 LVDLLGRSGRVDEAYNIIKQMP 466


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/564 (40%), Positives = 344/564 (60%), Gaps = 19/564 (3%)

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF------VAMFSA 219
           V  G L R    ++ LI  +A    P  AL L+  +  + + P   T       +A+  A
Sbjct: 44  VTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPA 103

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
                   +    HAV    LG  G  +L+  A+I ++A  GL+         +  S + 
Sbjct: 104 VPGARRLALAVHAHAV---RLGLAGF-LLVNNALIRVHA--GLLGRLADAHLLLRTSAAV 157

Query: 280 AA--WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
            A  ++++I+ + R G++  AR LFD+M +R+ VSW+AM++GY Q G   +AL +F +M+
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
           + G+ PD+  +V VL AC  LGAL+ GK +H  Y++       +FL TA++DMYAKCG +
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHG-YLKANNIRMTVFLGTALVDMYAKCGEV 276

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
              + VF  +    K V  + ++I GLA HG G  S+ +F +ME  G+KPD + F+  LC
Sbjct: 277 QLGMEVFEGMKD--KNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALC 334

Query: 458 ACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           AC+H GLV++G++ F SM+N YGIKP++EHYGCMVDLLAR+G L EA  +++ MP   ++
Sbjct: 335 ACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDA 394

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           +IW AL+A CR H+N ++ E   +  ++LEPD    YVLL N+ + + R   AR++R LM
Sbjct: 395 LIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLM 454

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQV 635
            + G++K PG S +E  G +H+F+    SHP+ K+I     ++  +++   GYVP+  +V
Sbjct: 455 REKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEV 514

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
           + D++EEE E+ +S HSEKLA+AF LI++     IRI KNLR+C DCH   KL+S++Y R
Sbjct: 515 LLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGR 574

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           EI+VRD  RFHLFK G CSC D+W
Sbjct: 575 EIIVRDRTRFHLFKDGTCSCKDYW 598



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 158/369 (42%), Gaps = 73/369 (19%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ-----I 131
           + L+R ++ S  PQ AL LY  ++  G+  P   T P +L S A LS    G +     +
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLF-PTPHTLPSLLKSLA-LSPAVPGARRLALAV 114

Query: 132 HCHIIKFGLEFDLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYNTLI-------- 182
           H H ++ GL   L + NALI  ++ + G + +AH +   S A D  ++NTLI        
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGR 174

Query: 183 -----------------------NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
                                  NGY Q  +   AL +F +MQ   ++PD    V + +A
Sbjct: 175 VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAA 234

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +L     GK  H  +  N   +   + L TA+++MYAKCG + +   VF  M   K+ 
Sbjct: 235 CAQLGALEQGKWVHGYLKAN--NIRMTVFLGTALVDMYAKCGEVQLGMEVFEGM-KDKNV 291

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            AW++MI G    G+                                S +L LF +MES 
Sbjct: 292 LAWTTMIKGLAMHGR-------------------------------GSDSLTLFSQMESS 320

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           G+ PD++  +  L AC   G +D G+ L    + N      I     ++D+ A+ G +  
Sbjct: 321 GVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSE 380

Query: 400 ALSVFYKIP 408
           A  +  K+P
Sbjct: 381 ARDMVEKMP 389



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 137/284 (48%), Gaps = 5/284 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   N   W+ ++ GY ++   +EAL +++ M ++G V P++     VL +CA
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQG-VRPDDTVLVGVLAACA 236

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L + + G  +H ++    +   +F+  AL+  Y+  G +    +VFEG   ++++++ T
Sbjct: 237 QLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTT 296

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A       +L LF +M+ S ++PD   F+    ACT       G++    +  N 
Sbjct: 297 MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNY 356

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G +   +     ++++ A+ GL++ A  +   M M      W ++++G      +E A  
Sbjct: 357 G-IKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEY 415

Query: 301 LFD---QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +     +++     ++  + + YS  G  + A E+   M   G+
Sbjct: 416 VIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGV 459


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/611 (39%), Positives = 363/611 (59%), Gaps = 16/611 (2%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH---KVFEGSL 171
           ++  C  L   K   QIH  ++  GL  D  +    +   ++    NN H   +V + S 
Sbjct: 15  MVEPCTTLRELK---QIHTQLLINGLLNDPQLVGQFVASIAL-NNPNNLHYSNQVLDNSQ 70

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC--IQPDAFTFVAMFSACTELNDPRIG 229
              L ++N++I  +++   P  +   + ++  S   + PD +TF  +     +L     G
Sbjct: 71  NPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTG 130

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
              H    K       +  +++ +I MYA+ G ++   RVFS++         ++M+S  
Sbjct: 131 SSVHGAAVKY--GFEYDPHVQSGLIYMYAELGGLDACHRVFSSI-CEPDLVCQTAMVSAC 187

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            + G +  AR+LFD+M  +D ++W AMISGY Q G   +AL LF  M+  G+  +EV+MV
Sbjct: 188 AKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMV 247

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL AC  LGALD G+  H  YIE       + L TA+IDMYAKCG+++ A+ VF+ + +
Sbjct: 248 SVLSACSHLGALDQGRWAHA-YIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKE 306

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K V  ++S I GLA +G GE  + +F  M+   ++P+ +TFV+VL  CS  GLVEEG+
Sbjct: 307 --KNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGR 364

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           + FESM   YGI+P++EHYGCMVDL  R G LDEA   I SMP   +   W ALL AC++
Sbjct: 365 KHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKI 424

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           +RN ++GE+A +K+++LE  +   YVLLSN+ A++  W+    VR+ M+  G++K PG S
Sbjct: 425 YRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCS 484

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE  G +H F    KSHP+  EI++ML +++ +LK +GYV NT  V FD++EEEKE  +
Sbjct: 485 VIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDAL 544

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEK+A+AFGLI+      IRI KNLR+C DCH A K++S+ + REI+VRD  RFH F
Sbjct: 545 CMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHF 604

Query: 709 KKGNCSCMDFW 719
           + G CSC  +W
Sbjct: 605 RDGECSCKGYW 615



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 213/443 (48%), Gaps = 77/443 (17%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALS---GCKNGLF 59
           R +++H ++ +++E C +L++  QIH Q++ +GL   ++  QL+  F  S      N L 
Sbjct: 5   RCIVKHPTI-SMVEPCTTLRELKQIHTQLLINGL---LNDPQLVGQFVASIALNNPNNLH 60

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVLNS 118
            S  +     NP +F +N+++R +S+S +P  +   Y+ +L S G ++P+N+TF F++ +
Sbjct: 61  YSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRT 120

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV-- 176
            A+L +  +G  +H   +K+G E+D  +++ LI+ Y+  G ++  H+VF      DLV  
Sbjct: 121 SAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQ 180

Query: 177 -----------------------------SYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
                                        ++N +I+GY Q  +   AL LF  MQ   ++
Sbjct: 181 TAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVK 240

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
            +  + V++ SAC+ L     G+  HA + +N   +   + L TA+I+MYAKCG MN A 
Sbjct: 241 VNEVSMVSVLSACSHLGALDQGRWAHAYIERNK--LRMTLTLGTALIDMYAKCGNMNKAM 298

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
            VF  M   K+   WSS I G    G  E+  +LF  M Q                    
Sbjct: 299 EVFWGM-KEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDS------------------ 339

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT--T 385
                        + P+E+T V+VLR C  +G ++ G++  +   +  V+G    L    
Sbjct: 340 -------------VQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK--VYGIEPRLEHYG 384

Query: 386 AVIDMYAKCGSIDTALSVFYKIP 408
            ++D+Y + G +D AL+    +P
Sbjct: 385 CMVDLYGRAGHLDEALNFINSMP 407


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/742 (34%), Positives = 407/742 (54%), Gaps = 58/742 (7%)

Query: 15  LESCKSL---KQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++SC +L   + ALQ+ G +   G       ++ ++  F   G  +  F S+  FSQI+ 
Sbjct: 169 MKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVD--FASK-QFSQIER 225

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN---------------------- 108
           P +F  N+++ GY++S     AL L+ SM  + +VS N                      
Sbjct: 226 PTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDM 285

Query: 109 --------NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
                   + T+   L +CA+LSS   G Q+H  +I+     D ++ +A++  Y+  G  
Sbjct: 286 HNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCF 345

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
             A +VF     R+ VS+  LI G+ Q      +L LF +M+   +  D F    + S C
Sbjct: 346 KEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGC 405

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
           +   D  + +Q H++  K+       +++  ++I+MYAKCG +  AE +FS+M   +   
Sbjct: 406 SNRMDMCLARQLHSLSLKSGHTRA--VVISNSLISMYAKCGNLQNAESIFSSM-EERDIV 462

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESL 339
           +W+ M++ Y++ G I +AR+ FD M  R++++W AM+  Y Q G     L+++  M    
Sbjct: 463 SWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEK 522

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
            + PD VT V + R C  +GA   G ++    ++ V    +  +  AVI MY+KCG I  
Sbjct: 523 DVIPDWVTYVTLFRGCADMGANKLGDQITGHTVK-VGLILDTSVMNAVITMYSKCGRISE 581

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A  +F  + +  K +  +N++I+G +QHG+G+ +I +F +M   G KPD +++V VL +C
Sbjct: 582 ARKIFDFLSR--KDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSC 639

Query: 460 SHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLV+EGK +F+ +  ++ + P +EH+ CMVDLLAR G L EA  LI  MP    + +
Sbjct: 640 SHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEV 699

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLE-PDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           W ALL+AC+ H N ++ E+A + L DL+ PD G  Y+LL+ + A+  +  ++ QVRKLM 
Sbjct: 700 WGALLSACKTHGNNELAELAAKHLFDLDSPDSGG-YMLLAKIYADAGKSVDSAQVRKLMR 758

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           D GI+K PG+S++E    +H F A   SHPQ   I   L ++  K+   GYV        
Sbjct: 759 DKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRT------ 812

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
              E  +  +  +HSEKLA+AFG++N  +   I I KNLRICGDCH   KL+S +  RE 
Sbjct: 813 ---ESLRSEI--HHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREF 867

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           ++RDA+RFH FK G+CSC D+W
Sbjct: 868 VIRDAVRFHHFKGGSCSCGDYW 889



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 144/597 (24%), Positives = 270/597 (45%), Gaps = 64/597 (10%)

Query: 5   VLEHSSLLALLESCKSLKQALQI-HGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSR 62
           V   ++LL    SC +L  A  +  G I     + H+I  +      +LS  +       
Sbjct: 63  VFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEE------ 116

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF ++   ++  WNTLM GY +S    +A+  + SM   G   PN FTF   + SC  L
Sbjct: 117 -LFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGAL 175

Query: 123 SSFKSGCQIHCHIIKFGLE---------FDLFIRNALIHFYS-----------------I 156
              +   Q+   + KFG +          D+F+R   + F S                 +
Sbjct: 176 GWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSML 235

Query: 157 FGY-----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAF 211
            GY     +++A ++FE    RD+VS+N +++  +Q      AL +   M +  ++ D+ 
Sbjct: 236 AGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDST 295

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T+ +  +AC +L+    GKQ HA V ++L C+  +  + +A++ +YAKCG    A RVFS
Sbjct: 296 TYTSSLTACAKLSSLGWGKQLHAQVIRSLPCI--DPYVASAMVELYAKCGCFKEARRVFS 353

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFS 327
           ++   ++T +W+ +I G+ + G    + +LF+QM       D  +   +ISG S      
Sbjct: 354 SL-RDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN----R 408

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
             + L  ++ SL +       V +  + + + A   G   + + I + +  R+I   T +
Sbjct: 409 MDMCLARQLHSLSLKSGHTRAVVISNSLISMYA-KCGNLQNAESIFSSMEERDIVSWTGM 467

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLK 446
           +  Y++ G+I  A   F  +  + + V  +N+++    QHG  E  + ++  M     + 
Sbjct: 468 LTAYSQVGNIGKAREFFDGM--STRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVI 525

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           PD VT+VT+   C+  G  + G Q     +  G+         ++ + ++ GR+ EA  +
Sbjct: 526 PDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKI 585

Query: 507 IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-----EPDHGAHYVLLSN 558
              +    + V W A++     H    +G+ A +   D+     +PD+ ++  +LS+
Sbjct: 586 FDFLSRK-DLVSWNAMITGYSQH---GMGKQAIEIFDDMLKKGAKPDYISYVAVLSS 638



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 167/343 (48%), Gaps = 12/343 (3%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           R V+  +SL+++   C +L+ A  I   +    +   +S + +++ ++  G    + ++R
Sbjct: 428 RAVVISNSLISMYAKCGNLQNAESIFSSMEERDI---VSWTGMLTAYSQVG---NIGKAR 481

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
             F  +   N+  WN ++  Y +  + ++ L +Y++ML++  V P+  T+  +   CA +
Sbjct: 482 EFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADM 541

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            + K G QI  H +K GL  D  + NA+I  YS  G I+ A K+F+    +DLVS+N +I
Sbjct: 542 GANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMI 601

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GY+Q      A+ +F  M     +PD  ++VA+ S+C+     + GK F+  + K    
Sbjct: 602 TGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGK-FYFDMLKRDHN 660

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RA 298
           V   +   + ++++ A+ G +  A+ +   M M  +   W +++S     G  E     A
Sbjct: 661 VSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAA 720

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           + LFD +D  D   +  +   Y+  G    + ++   M   GI
Sbjct: 721 KHLFD-LDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGI 762


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/543 (41%), Positives = 328/543 (60%), Gaps = 38/543 (6%)

Query: 178 YNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           YN+LI          PAL ++R+M +    +P++FT      AC  +  P  G+Q HA  
Sbjct: 94  YNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQA 152

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +    + ++  ++T ++N+YAKC  + +A  VF  M   K                   
Sbjct: 153 LRQ--GLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDK------------------- 191

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                       +LV+W+AM+SGYS+VG  ++AL LF +M+++G+ PDEVTMV+V+ AC 
Sbjct: 192 ------------NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACA 239

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             GALD GK +H  YI+      ++ L+TA+IDMYAKCG I+ A  VF  + +  K    
Sbjct: 240 KAGALDLGKWVHA-YIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVE--KDTKA 296

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           ++++I G A HGL E ++ +F  M  + ++P+ VTF+ VL AC+H GLVE+G++++  M 
Sbjct: 297 WSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQ 356

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           N GIKP ME+YGCMVDLL R G LD+AY  +  MP   NSVIWR LL AC+      I E
Sbjct: 357 NLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAE 416

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A ++LL+LEP +  +YVLLSN+ A   +W+    +R+ M    +    G S IE NG L
Sbjct: 417 SATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHL 476

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F+ S  SHP+ +EI L+L++M  +++ AG+ P T  V+ DV EEEKE  +  HSE+LA
Sbjct: 477 HEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLA 536

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +A+GL+ +R+   IR+ KNLR C DCH   K++S+ Y REI+VRD +RFH F  G+CSC 
Sbjct: 537 IAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCK 596

Query: 717 DFW 719
           DFW
Sbjct: 597 DFW 599



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 196/398 (49%), Gaps = 37/398 (9%)

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R LF QI +P  F +N+L+R    + S   AL +Y  ML  G   PN+FT  F L +CA 
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLVSYNT 180
           + +   G Q+H   ++ GL    +++  L++ Y+    +  A  VF+G    ++LV+++ 
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +++GY++V     AL LFR+MQ   ++PD  T V++ SAC +     +GK  HA  Y + 
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHA--YIDR 256

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +  ++ L TA+I+MYAKCGL+  A  VF  M + K T AWS+MI G+   G +E    
Sbjct: 257 KGITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVE---- 311

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                       AL LF +M  L + P+ VT + VL AC   G 
Sbjct: 312 ---------------------------DALGLFSRMLELKVRPNNVTFIGVLSACAHSGL 344

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G+R +   ++N+    ++     ++D+  + G +D A S    +P +  +V     +
Sbjct: 345 VEDGRR-YWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLL 403

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           ++  + + +     A  R +EL    P+    ++ L A
Sbjct: 404 VACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYA 441



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 142/288 (49%), Gaps = 9/288 (3%)

Query: 15  LESCKSLK---QALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++C ++    +  Q+H Q +  GL       + L++ +A   C+       +      +
Sbjct: 133 LKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYA--KCEQVALARTVFDGMAGD 190

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            N+  W+ ++ GYSR     EAL L+  M + G V P+  T   V+++CA+  +   G  
Sbjct: 191 KNLVAWSAMVSGYSRVGMVNEALGLFREMQAVG-VEPDEVTMVSVISACAKAGALDLGKW 249

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H +I + G+  DL +  ALI  Y+  G I  A  VF+  + +D  +++ +I G+A    
Sbjct: 250 VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGL 309

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF +M +  ++P+  TF+ + SAC        G+++ +++ +NLG +  +M   
Sbjct: 310 VEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLG-IKPSMENY 367

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
             ++++  + GL++ A      M +S ++  W +++       +I+ A
Sbjct: 368 GCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIA 415



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACS 460
           ++F +IP    T   +NS+I  L   G    ++AV+R M   G  +P+  T    L AC+
Sbjct: 81  NLFDQIPD--PTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACA 137

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
                 EG+Q     L  G+         +++L A+  ++  A  +   M  D N V W 
Sbjct: 138 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 197

Query: 521 ALLAA-CRLHR-NAKIGEIAGQKLLDLEPD 548
           A+++   R+   N  +G     + + +EPD
Sbjct: 198 AMVSGYSRVGMVNEALGLFREMQAVGVEPD 227


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/697 (36%), Positives = 383/697 (54%), Gaps = 49/697 (7%)

Query: 27  IHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           +H   V SG   ++ ++S+    +F LS   +    +R +F  + +P+  +WNTL+ G S
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGND----ARKVFDAVPSPDTVLWNTLLAGLS 200

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
            S    EAL  +  M   G V P++ T   VL + A +++   G  +H    K GL    
Sbjct: 201 GS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHE 256

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
            +   LI  Y+  G +  A  +F+     DLV+YN LI+GY+       ++ LF+++   
Sbjct: 257 HVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            ++P + T VA+    +      +    HA V K                          
Sbjct: 317 GLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVK-------------------------- 350

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                    G+  +    +++ + Y R   ++ AR+ FD M ++ + SW AMISGY+Q G
Sbjct: 351 --------AGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNG 402

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
               A+ LF +M++L + P+ +T+ + L AC  LGAL  GK +H+  I N     N+++ 
Sbjct: 403 LTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHK-IIANEKLELNVYVM 461

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           TA+IDMY KCGSI  A  +F  +  + K V  +N +ISG   HG G  ++ ++++M    
Sbjct: 462 TALIDMYVKCGSIAEARCIFDSM--DNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAH 519

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEA 503
           L P   TF++VL ACSHGGLV+EG   F SM  +YGI P +EH  CMVDLL R G+L EA
Sbjct: 520 LHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEA 579

Query: 504 YGLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           + LI   P  A    IW ALL AC +H++  + ++A QKL +LEP++  +YVLLSN+   
Sbjct: 580 FELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTS 639

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             ++ EA  VR+      + K PG + IE     H F+A  ++HPQ+  I L L+ +T K
Sbjct: 640 KKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAK 699

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +  AGY P+T   ++DV+EEEKE +V  HSEKLA+AFGL+N+     IRI KNLR+C DC
Sbjct: 700 MIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDC 759

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H A K++S++ +R I+VRDA RFH F+ G CSC D+W
Sbjct: 760 HNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/713 (33%), Positives = 399/713 (55%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLL L  +   L     +H Q+   GL+   ++++ L + +A   C+     +R +F +
Sbjct: 229 TSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYA--KCRRP-GDARRVFDR 285

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   WN L+ GY+R+   + A+ +   M  +    P+  T   VL +CA   +  +
Sbjct: 286 MPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGA 345

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
             ++H   ++ G +  + +  A++  Y   G +++A KVF+G   R+ VS+N +I GYA+
Sbjct: 346 CREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAE 405

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL LF++M    +     + +A   AC EL     G++ H ++ + +G + SN+
Sbjct: 406 NGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR-IG-LESNV 463

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+I MY KC   ++A                                 Q+FD++  
Sbjct: 464 NVMNALITMYCKCKRTDLAA--------------------------------QVFDELGY 491

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +  VSW AMI G +Q G    A+ LF +M+   + PD  T+V+++ A   +      + +
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWI 551

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  Y   +   +++++ TA+IDMYAKCG +  A S+F       + V  +N++I G   H
Sbjct: 552 HG-YSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARD--RHVITWNAMIHGYGSH 608

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           G G+ ++ +F EM+  G  P+  TF++VL ACSH GLV+EG+++F SM  +YG++P MEH
Sbjct: 609 GSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEH 668

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YG MVDLL R G+L EA+  IQ MP +    ++ A+L AC+LH+N ++ E + Q++ +LE
Sbjct: 669 YGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELE 728

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+ G ++VLL+N+ A    W++  +VR  M+  G+QK PGWS ++    +H F +   +H
Sbjct: 729 PEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNH 788

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            Q K+I   L  +  ++K+ GYVP+T   + DV+++ K  +++ HSEKLA+A+GLI +  
Sbjct: 789 QQAKDIYARLAKLIEEIKAVGYVPDT-DSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAP 847

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             TI+I KNLR+C DCH A KL+S +  REI++RD  RFH FK G CSC D+W
Sbjct: 848 GTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 211/458 (46%), Gaps = 40/458 (8%)

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L    SRSD  + AL  + +M       P   TF  +L  CA  +   +G  +H  +   
Sbjct: 196 LRAAASRSDL-RGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAAR 254

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL  +     AL + Y+      +A +VF+   ARD V++N L+ GYA+      A+ + 
Sbjct: 255 GLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMV 314

Query: 199 RKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            +MQ +   +PDA T V++  AC +       ++ HA   +  G     + + TA++++Y
Sbjct: 315 VRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVR--GGFDEQVNVSTAILDVY 372

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KCG ++ A +VF  M   +++ +W++MI GY   G                        
Sbjct: 373 CKCGAVDSARKVFDGM-QDRNSVSWNAMIKGYAENGDA---------------------- 409

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
                    ++AL LF +M   G+   +V+++A L AC  LG LD G+R+H+  +  +  
Sbjct: 410 ---------TEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLV-RIGL 459

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             N+ +  A+I MY KC   D A  VF ++    KT   +N++I G  Q+G  E ++ +F
Sbjct: 460 ESNVNVMNALITMYCKCKRTDLAAQVFDEL--GYKTRVSWNAMILGCTQNGSSEDAVRLF 517

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497
             M+L  +KPD  T V+++ A +      + +      +   +   +     ++D+ A+ 
Sbjct: 518 SRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           GR+  A  L  S   D + + W A++     H + K+ 
Sbjct: 578 GRVSIARSLFNSA-RDRHVITWNAMIHGYGSHGSGKVA 614


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 348/608 (57%), Gaps = 45/608 (7%)

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           L+  Y+  G      KVF+    R++V YN +I  Y         L +FR+M +   +PD
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            +T+  +  AC+   + R G   H  V K +G +  N+ +   +I MY KCG +  A RV
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLK-VG-LDFNLFVGNGLIAMYGKCGCLFEARRV 176

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERA------------------------------- 298
           F  M + K   +W+SM++GY    + + A                               
Sbjct: 177 FDEM-IWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSS 235

Query: 299 ------RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                  ++F  +++++L+SW  MI  Y +    +QA++L+ +ME   + PD +T  +VL
Sbjct: 236 ENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVL 295

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  L AL  G+R+H+ Y+E      N+ L  ++IDMYA+CG +D A  VF ++    +
Sbjct: 296 PACGDLSALLLGRRIHE-YVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRM--KFR 352

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V+ + S+IS     G G  ++A+F EM   G  PD + FV +L ACSH GL++EG+ +F
Sbjct: 353 DVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYF 412

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           + M + Y I P++EHY C+VDLL R GR+DEAY +I+ MP + N  +W  LL++CR+  N
Sbjct: 413 KQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTN 472

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             IG +A   LL L P+   +YVLLSN+ A+  RW+E  ++R +M    I+K PG S +E
Sbjct: 473 MDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVE 532

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            N  +H FLA   SHPQ+KEI   L  +  K+K  GYVP T   + DV+EE+KE  ++ H
Sbjct: 533 LNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVH 592

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+ F L+N++  + IRITKNLR+CGDCH+A KL+S+I  REI+VRD  RFH FK G
Sbjct: 593 SEKLAIVFALLNTQEYQ-IRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDG 651

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 652 VCSCGDYW 659



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 221/444 (49%), Gaps = 48/444 (10%)

Query: 5   VLEHSSLLA-LLESCKSLKQALQIHGQIVHSGLNHHISSS---QLISFFALSGCKNGLFR 60
           +L    LLA  L+    +K   ++H  I +  LN H + S   +L+  +A  G + GL  
Sbjct: 17  ILTSFGLLAKALDQNPDIKTLKKLHTMIFY--LNSHQNPSLGIKLMRSYAACG-EPGL-- 71

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++ + N+  +N ++R Y  +    + L+++  M++ G   P+N+T+P VL +C+
Sbjct: 72  TRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGF-RPDNYTYPCVLKACS 130

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              + + G  IH  ++K GL+F+LF+ N LI  Y   G +  A +VF+  + +D+VS+N+
Sbjct: 131 CSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNS 190

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVY 237
           ++ GYA       AL + R+M+D   +PD  T  ++  A    +      + K F  +  
Sbjct: 191 MVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLER 250

Query: 238 KNLGCVGSNMLLK--------TAVINMYAK-------------------CGLMN---MAE 267
           KNL  +  N++++        T  +++Y +                   CG ++   +  
Sbjct: 251 KNL--ISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGR 308

Query: 268 RVFSTMGMSK---STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
           R+   +   K   +    +S+I  Y R G ++ A+++FD+M  RD+ SWT++IS Y   G
Sbjct: 309 RIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTG 368

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
               A+ LF +M + G  PD +  VA+L AC   G LD G+   +Q  ++      I   
Sbjct: 369 QGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHY 428

Query: 385 TAVIDMYAKCGSIDTALSVFYKIP 408
             ++D+  + G +D A ++  ++P
Sbjct: 429 ACLVDLLGRAGRVDEAYNIIKQMP 452



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 130/248 (52%), Gaps = 9/248 (3%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + L+   A +  +N L+  +I F  ++  N+  WN ++R Y ++  P +A+ LY  M  K
Sbjct: 224 ASLMPAVANTSSENVLYVEKI-FVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQM-EK 281

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             V P+  TF  VL +C  LS+   G +IH ++ K  L  +L + N+LI  Y+  G +++
Sbjct: 282 CRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDD 341

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF+    RD+ S+ +LI+ Y    + C A+ LF +M +S   PD+  FVA+ SAC+ 
Sbjct: 342 AKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSH 401

Query: 223 ---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
              L++ RI  +     Y+    +   +     ++++  + G ++ A  +   M +  + 
Sbjct: 402 SGLLDEGRIYFKQMTDDYR----ITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNE 457

Query: 280 AAWSSMIS 287
             W++++S
Sbjct: 458 RVWATLLS 465


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/707 (36%), Positives = 395/707 (55%), Gaps = 48/707 (6%)

Query: 21  LKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           LK+  ++HG ++ +GL   +    + L++ +A  G    +  +R +F  + + +   WN+
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCG---SIADARRVFYFMTDKDSVSWNS 385

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ G  ++    EA+  Y SM    I+ P +FT    L+SCA L   K G QIH   +K 
Sbjct: 386 MITGLDQNGCFIEAVERYKSMRRHDIL-PGSFTLISSLSSCASLKWAKLGQQIHGESLKL 444

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP-ALWL 197
           G++ ++ + NAL+  Y+  GY+N   K+F      D VS+N++I   A+ +   P A+  
Sbjct: 445 GIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVC 504

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F   Q +  + +  TF ++ SA + L+   +GKQ H +  KN   +      + A+I  Y
Sbjct: 505 FLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKN--NIADEATTENALIACY 562

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KCG M+  E++FS M                                ++RD V+W +MI
Sbjct: 563 GKCGEMDGCEKIFSRMA-------------------------------ERRDNVTWNSMI 591

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           SGY      ++AL+L   M   G   D      VL A   +  L+ G  +H   +     
Sbjct: 592 SGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR-ACL 650

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++ + +A++DMY+KCG +D AL  F  +P  ++    +NS+ISG A+HG GE ++ +F
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMP--VRNSYSWNSMISGYARHGQGEEALKLF 708

Query: 438 REMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
             M+L G   PD VTFV VL ACSH GL+EEG + FESM + YG+ P++EH+ CM D+L 
Sbjct: 709 ETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLG 768

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAAC-RLH-RNAKIGEIAGQKLLDLEPDHGAHY 553
           R G LD+    I+ MP   N +IWR +L AC R + R A++G+ A + L  LEP++  +Y
Sbjct: 769 RAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNY 828

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLL NM A   RWE+  + RK M D+ ++K  G+S++     +H F+A  KSHP    I 
Sbjct: 829 VLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIY 888

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE-TIRI 672
             LK++  K++ AGYVP T   ++D+++E KE ++SYHSEKLA+AF L   RS    IRI
Sbjct: 889 KKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRI 948

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCH AFK +S+I  R+I++RD+ RFH F+ G CSC DFW
Sbjct: 949 MKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 215/470 (45%), Gaps = 39/470 (8%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++   N   W  ++ GYSR+   +EALV    M+ +GI S N + F  VL +C 
Sbjct: 55  ARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFS-NQYAFVSVLRACQ 113

Query: 121 RLSSFKS--GCQIHCHIIKFGLEFDLFIRNALIHFY-SIFGYINNAHKVFEGSLARDLVS 177
            + S     G QIH  + K     D  + N LI  Y    G +  A   F     ++ VS
Sbjct: 114 EIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVS 173

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP--RIGKQFHAV 235
           +N++I+ Y+Q  +   A  +F  MQ    +P  +TF ++ +    L +P  R+ +Q    
Sbjct: 174 WNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCT 233

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           + K+ G + +++ + + +++ +AK G ++ A +VF+ M  +++    + ++ G  R+   
Sbjct: 234 IQKS-GLL-TDLFVGSGLVSAFAKSGSLSYARKVFNQM-ETRNAVTLNGLMVGLVRQKWG 290

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           E A +LF  M+    VS  + +   S    +S A E+                       
Sbjct: 291 EEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEV----------------------- 327

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
                L  G+ +H   I   +    + +   +++MYAKCGSI  A  VFY +    K   
Sbjct: 328 ----GLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD--KDSV 381

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +NS+I+GL Q+G    ++  ++ M    + P   T ++ L +C+     + G+Q     
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGES 441

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           L  GI   +     ++ L A  G L+E   +  SMP + + V W +++ A
Sbjct: 442 LKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 131/532 (24%), Positives = 240/532 (45%), Gaps = 58/532 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-------SSQLISFFALSGCKNGLFRSR 62
           + +++L +C+ +     + G+ +H GL   +S       S+ LIS +    C   +  + 
Sbjct: 104 AFVSVLRACQEIGSVGILFGRQIH-GLMFKLSYAVDAVVSNVLISMYW--KCIGSVGYAL 160

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
             F  I+  N   WN+++  YS++   + A  +++SM   G   P  +TF  ++ +   L
Sbjct: 161 CAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDG-SRPTEYTFGSLVTTACSL 219

Query: 123 S--SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +    +   QI C I K GL  DLF+ + L+  ++  G ++ A KVF     R+ V+ N 
Sbjct: 220 TEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNG 279

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN-----DPRIGKQFHAV 235
           L+ G  + K    A  LF  M +S I     ++V + S+  E +       + G++ H  
Sbjct: 280 LMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGH 338

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           V    G V   + +   ++NMYAKCG +  A RVF  M   K + +W+SMI+G       
Sbjct: 339 VITT-GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFM-TDKDSVSWNSMITG------- 389

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
                    +DQ                G F +A+E +  M    I P   T+++ L +C
Sbjct: 390 ---------LDQN---------------GCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             L     G+++H + ++ +    N+ ++ A++ +YA+ G ++    +F  +P++ +   
Sbjct: 426 ASLKWAKLGQQIHGESLK-LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVS- 483

Query: 416 LFNSIISGLA--QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
            +NSII  LA  +  L E ++  F   +  G K + +TF +VL A S     E GKQ   
Sbjct: 484 -WNSIIGALARSERSLPE-AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 541

Query: 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             L   I  +      ++    + G +D    +   M    ++V W ++++ 
Sbjct: 542 LALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 154/317 (48%), Gaps = 30/317 (9%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +++I+ Y   G    AR++FD+M  R+ VSW  ++SGYS+ G   +AL     M   GI 
Sbjct: 40  NNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIF 99

Query: 343 PDEVTMVAVLRACVGLGALD--FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDT 399
            ++   V+VLRAC  +G++   FG+++H    + + +  +  ++  +I MY KC GS+  
Sbjct: 100 SNQYAFVSVLRACQEIGSVGILFGRQIHGLMFK-LSYAVDAVVSNVLISMYWKCIGSVGY 158

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT-VLCA 458
           AL  F  I   +K    +NSIIS  +Q G   ++  +F  M+  G +P   TF + V  A
Sbjct: 159 ALCAFGDI--EVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTA 216

Query: 459 CSHGGLVEEGKQFFESML----NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           CS   L E   +  E ++      G+   +     +V   A+ G L  A  +   M    
Sbjct: 217 CS---LTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQME-TR 272

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQ------KLLDLEPDHGAHYVLLSNM----LAETY 564
           N+V    L+    L R  K GE A +       ++D+ P+  ++ +LLS+     LAE  
Sbjct: 273 NAVTLNGLMVG--LVRQ-KWGEEATKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEV 327

Query: 565 RWEEARQVRKLMDDSGI 581
             ++ R+V   +  +G+
Sbjct: 328 GLKKGREVHGHVITTGL 344


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 364/609 (59%), Gaps = 19/609 (3%)

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDL 175
           +C+ ++  K   Q H  +++ GL  +    + +  F S+   G IN A K+F      D 
Sbjct: 11  ACSSMAEVK---QQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDT 67

Query: 176 VSYNTLINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
             YNTL   +  + + P  +L  +  M   C+ P+AFTF ++  AC    +    KQ HA
Sbjct: 68  FLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEE---AKQLHA 124

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            V K  G  G    L   +I++Y   G ++ A RVF TM    +  +W+S++SGY++ G 
Sbjct: 125 HVLK-FGFGGDTYALNN-LIHVYFAFGSLDDARRVFCTMS-DPNVVSWTSLVSGYSQWGL 181

Query: 295 IERARQLFDQMD-QRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVL 352
           ++ A ++F+ M  +++ VSW AMI+ + +   F +A  LF +M     +  D      +L
Sbjct: 182 VDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATML 241

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC G+GAL+ G  +H+ Y+E      +  L T +IDMY KCG +D A  VF  +   +K
Sbjct: 242 SACTGVGALEQGMWIHK-YVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGL--KVK 298

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPDGVTFVTVLCACSHGGLVEEGKQF 471
            VS +N +I G A HG GE +I +F+EME   +  PD +TFV VL AC+H GLVEEG  +
Sbjct: 299 RVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYY 358

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  M++ +GI P  EHYGCMVDLLAR GRL+EA  +I  MP   ++ +  ALL ACR+H 
Sbjct: 359 FRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHG 418

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N ++GE  G ++++L+P++   YV+L NM A   +WE+   VRKLMDD G++K PG+S I
Sbjct: 419 NLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMI 478

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E  G ++ F+A  + HP  + I   + +M   ++  G+VP+T  V+ D+ EEE+E  + Y
Sbjct: 479 EMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFY 538

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+A+GL+ ++  ET+R+TKNLR+C DCH A K++S++Y  +I++RD  RFH F  
Sbjct: 539 HSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSN 598

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 599 GECSCKDYW 607



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 236/523 (45%), Gaps = 105/523 (20%)

Query: 17  SCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRI-LFSQIDNPNI 73
           +C S+ +  Q H  ++  GL  N+H + S++ +F +LS  K+G     + LF+ + NP+ 
Sbjct: 11  ACSSMAEVKQQHSLLLRLGLSTNNH-AMSRIFTFCSLS--KHGDINYALKLFTTLPNPDT 67

Query: 74  FIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           F++NTL + + S S +P  +L+ Y+ ML +  V+PN FTFP ++ +C      K   Q+H
Sbjct: 68  FLYNTLFKAFFSLSQTPSLSLLFYSHML-QHCVTPNAFTFPSLIRACKLEEEAK---QLH 123

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ---VK 189
            H++KFG   D +  N LIH Y  FG +++A +VF      ++VS+ +L++GY+Q   V 
Sbjct: 124 AHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVD 183

Query: 190 E--------PCP---------------------ALWLFRKMQ-DSCIQPDAFTFVAMFSA 219
           E        PC                      A  LFR+M+ +  ++ D F    M SA
Sbjct: 184 EAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSA 243

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT +     G   H  V K    + S   L T +I+MY KCG ++ A  VF  + + K  
Sbjct: 244 CTGVGALEQGMWIHKYVEKTGIVLDSK--LATTIIDMYCKCGCLDKAFHVFCGLKV-KRV 300

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI----------SGYSQVG----- 324
           ++W+ MI G+   GK E A +LF +M++  +V+  ++           SG  + G     
Sbjct: 301 SSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFR 360

Query: 325 ------GFSQALELFGKM-----------------ESLGIHPDEVTMVAVLRACVGLGAL 361
                 G     E +G M                 + + + PD   + A+L AC   G L
Sbjct: 361 YMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNL 420

Query: 362 DFGKRLHQQYIE--NVVFGRNIFLTTAVIDMYAKCGSIDTALSV--------FYKIP--K 409
           + G+ +  + IE      GR + L     +MYA CG  +    V          K P   
Sbjct: 421 ELGEEVGNRVIELDPENSGRYVILG----NMYASCGKWEQVAGVRKLMDDRGVKKEPGFS 476

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREM----ELMGLKPD 448
            ++   + N  ++G   H L E   A   EM     ++G  PD
Sbjct: 477 MIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPD 519



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 156/366 (42%), Gaps = 41/366 (11%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNP 71
           +L+ +CK  ++A Q+H  ++  G      + + LI  +   G    L  +R +F  + +P
Sbjct: 108 SLIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFG---SLDDARRVFCTMSDP 164

Query: 72  NIFIWNTLMRGYS--------------------------------RSDSPQEALVLYTSM 99
           N+  W +L+ GYS                                + +  +EA  L+  M
Sbjct: 165 NVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRM 224

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
             +  +  + F    +L++C  + + + G  IH ++ K G+  D  +   +I  Y   G 
Sbjct: 225 RVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGC 284

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFS 218
           ++ A  VF G   + + S+N +I G+A   +   A+ LF++M++   + PD+ TFV + +
Sbjct: 285 LDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLT 344

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC        G  +   +    G +         ++++ A+ G +  A++V   M MS  
Sbjct: 345 ACAHSGLVEEGWYYFRYMVDVHG-IDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPD 403

Query: 279 TAAWSSMISGYTREGKIERARQLFD---QMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            A   +++      G +E   ++ +   ++D  +   +  + + Y+  G + Q   +   
Sbjct: 404 AAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKL 463

Query: 336 MESLGI 341
           M+  G+
Sbjct: 464 MDDRGV 469


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/703 (34%), Positives = 387/703 (55%), Gaps = 42/703 (5%)

Query: 19  KSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           K L++  Q+H  ++ +G       ++ L++ ++  G    L  +  LF  +   N+  W 
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCG---ELDHALKLFDTMPQRNLVSWT 75

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            ++ G S++    EA+  +  M   G V P  F F   + +CA L S + G Q+HC  +K
Sbjct: 76  AMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQMHCLALK 134

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
           FG+  +LF+ + L   YS  G + +A KVFE    +D VS+  +I+GY+++ E   AL  
Sbjct: 135 FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLA 194

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F+KM D  +  D     +   AC  L   + G+  H+ V K LG   S++ +  A+ +MY
Sbjct: 195 FKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LG-FESDIFVGNALTDMY 252

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
           +K G M  A  VF                                   + R++VS+T +I
Sbjct: 253 SKAGDMESASNVFGI-------------------------------DSECRNVVSYTCLI 281

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            GY +     + L +F ++   GI P+E T  ++++AC    AL+ G +LH Q ++ + F
Sbjct: 282 DGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK-INF 340

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F+++ ++DMY KCG ++ A+  F +I     T   +NS++S   QHGLG+ +I +F
Sbjct: 341 DEDPFVSSILVDMYGKCGLLEQAIQAFDEIGD--PTEIAWNSLVSVFGQHGLGKDAIKIF 398

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
             M   G+KP+ +TF+++L  CSH GLVEEG  +F SM   YG+ P  EHY C++DLL R
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR 458

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            GRL EA   I  MP++ N+  W + L ACR+H + ++G++A +KL+ LEP +    VLL
Sbjct: 459 AGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLL 518

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A   +WE+ R VR  M D  ++K PG+S+++     H F A   SHP+   I   L
Sbjct: 519 SNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKL 578

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
             +  ++K+AGYVP T  V  D+D+  KE ++  HSE++A+AF LI+    + I + KNL
Sbjct: 579 DTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNL 638

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+C DCH A K +S++  R+I+VRD  RFH F  G+CSC D+W
Sbjct: 639 RVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 203/427 (47%), Gaps = 18/427 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS +    S  S++   Q+H   +  G+   +   S L   ++  G    +F +  +F +
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG---AMFDACKVFEE 166

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   W  ++ GYS+    +EAL+ +  M+ +  V+ +       L +C  L + K 
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE-VTIDQHVLCSTLGACGALKACKF 225

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE-GSLARDLVSYNTLINGYA 186
           G  +H  ++K G E D+F+ NAL   YS  G + +A  VF   S  R++VSY  LI+GY 
Sbjct: 226 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 285

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGS 245
           + ++    L +F +++   I+P+ FTF ++  AC        G Q HA V K N      
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINF---DE 342

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  + + +++MY KCGL+  A + F  +G   +  AW+S++S + + G  + A ++F++M
Sbjct: 343 DPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFERM 401

Query: 306 DQR----DLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGA 360
             R    + +++ ++++G S  G   + L+ F  M+ + G+ P E     V+      G 
Sbjct: 402 VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGR 461

Query: 361 LDFGKR-LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           L   K  +++   E   FG   FL    I    + G +  A  +    PKN   + L ++
Sbjct: 462 LKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKL-AAEKLVKLEPKNSGALVLLSN 520

Query: 420 IISGLAQ 426
           I +   Q
Sbjct: 521 IYANERQ 527



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 135/254 (53%), Gaps = 6/254 (2%)

Query: 253 VINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           VI  YAK   +   +++ + +   G +  T   + +++ Y++ G+++ A +LFD M QR+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           LVSWTAMISG SQ   FS+A+  F  M   G  P +    + +RAC  LG+++ GK++H 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             ++  + G  +F+ + + DMY+KCG++  A  VF ++P   K    + ++I G ++ G 
Sbjct: 131 LALKFGI-GSELFVGSNLEDMYSKCGAMFDACKVFEEMP--CKDEVSWTAMIDGYSKIGE 187

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
            E ++  F++M    +  D     + L AC      + G+    S++  G +  +     
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 490 MVDLLARDGRLDEA 503
           + D+ ++ G ++ A
Sbjct: 248 LTDMYSKAGDMESA 261


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/717 (34%), Positives = 406/717 (56%), Gaps = 50/717 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH------ISSSQLISFFALSGCKNGLFRSRI 63
           + L++L++C +  + LQ HG+ V   ++           + LI+ +A   C++    +++
Sbjct: 263 TFLSILDACVN-PETLQ-HGKHVRESISETSFELDLFVGTALITMYAR--CRSPEDAAQV 318

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F ++   N+  W+ ++  ++      EAL  +  M  +GI+ PN  TF  +LN     S
Sbjct: 319 -FGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL-PNRVTFISLLNGFTTPS 376

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +   +IH  I + GL+    +RNAL++ Y      ++A  VF+     +L+S+N++I 
Sbjct: 377 GLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIG 436

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            Y Q +    AL LFR MQ   IQPD   F+ +  ACT  +  R  K  H  V ++   +
Sbjct: 437 IYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEES--GL 494

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G + L++T+++NMYAK                                 G+++ A  +  
Sbjct: 495 GGSPLVQTSLVNMYAKA--------------------------------GELDVAEVILQ 522

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +MD++ + +W  +I+GY+  G   +ALE + K++   I  D+VT ++VL AC    +L  
Sbjct: 523 EMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAE 582

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H   +E      ++ +  A+ +MY+KCGS++ A  +F  +P  +++   +N ++  
Sbjct: 583 GKMIHSNAVE-CGLDSDVIVKNALTNMYSKCGSMENARRIFDSMP--IRSAVSWNGMLQA 639

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
            AQHG  E  + + R+ME  G+K +G+TFV+VL +CSH GL+ EG Q+F S+  + GI+ 
Sbjct: 640 YAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEV 699

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           + EHYGC+VDLL R G+L EA   I  MP +   V W +LL ACR+ ++   G++A  KL
Sbjct: 700 KTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKL 759

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           L+L+P + +  V+LSN+ +E   W+ A ++R+ M    ++K PG S I+    +H F   
Sbjct: 760 LELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVR 819

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
             SHP+  EI   ++++   ++ AGYVP+T  V+ DVDEE+KE++++YHSEKLA+AFGLI
Sbjct: 820 DTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLI 879

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++    ++ I KNLR+C DCH A K +S+I  REI+VRD  RFH F+ G+CSC D+W
Sbjct: 880 STPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 230/474 (48%), Gaps = 47/474 (9%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F +I   N+  WN ++  YS   S QEAL L+ +ML +G V+PN  T   VLNSC     
Sbjct: 15  FGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEG-VAPNAITLVAVLNSCGSFRE 73

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  +H   ++ G   +  +  AL++ Y   G + +A  VFE    +++V++N ++  
Sbjct: 74  LRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGV 133

Query: 185 YAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           Y+ ++  C   A+ LF +M    ++ +  TF+ + ++  + +  R GK  H+ V ++   
Sbjct: 134 YS-LQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHS 192

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  ++ + TA++N Y KCG +  A +VF  M   +S   W+SMIS Y+            
Sbjct: 193 L--DVFVNTALVNTYTKCGSLTDARKVFDGMP-CRSVGTWNSMISAYS------------ 237

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                         IS  S      +A  +F +M+  G   D VT +++L ACV    L 
Sbjct: 238 --------------ISERS-----GEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQ 278

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK-NLKTVSLFNSII 421
            GK + ++ I    F  ++F+ TA+I MYA+C S + A  VF ++ + NL T   +++II
Sbjct: 279 HGKHV-RESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLIT---WSAII 334

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           +  A HG    ++  FR M+  G+ P+ VTF+++L   +    +EE  +    +  +G+ 
Sbjct: 335 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 394

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA---ACRLHRNA 532
                   +V++  R    D+A  +   +    N + W +++     C  H +A
Sbjct: 395 DTTTMRNALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQCERHDDA 447



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/595 (22%), Positives = 273/595 (45%), Gaps = 86/595 (14%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILF 65
           +L+A+L SC S   L+  + +H   +  G   + + ++ L++ +   G    L  ++ +F
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGT---LLDAQSVF 116

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQE-ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            ++   N+  WN ++  YS      + A+ L+T ML +G V  N  TF  VLNS     +
Sbjct: 117 EEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG-VKANVITFLNVLNSVVDPDA 175

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  IH  + +     D+F+  AL++ Y+  G + +A KVF+G   R + ++N++I+ 
Sbjct: 176 LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISA 235

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y+  +    A ++F++MQ    + D  TF+++  AC      + GK     + +      
Sbjct: 236 YSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET--SFE 293

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ + TA+I MYA+C     A +VF  M  + +   WS++I+ +   G    A + F  
Sbjct: 294 LDLFVGTALITMYARCRSPEDAAQVFGRMKQT-NLITWSAIITAFADHGHCGEALRYFRM 352

Query: 305 MDQRDL----VSWTAMISGYSQVGGFSQ----------------------ALELFGKMES 338
           M Q  +    V++ ++++G++   G  +                       + ++G+ ES
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 339 ----------------------LGI------HPDEVTM----------------VAVLRA 354
                                 +GI      H D + +                + +L A
Sbjct: 413 PDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGA 472

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  +G+    ++L  Q +E    G +  + T++++MYAK G +D A  +  ++ +  + +
Sbjct: 473 CT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDE--QQI 529

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
           + +N +I+G A HG    ++  +++++L  +  D VTF++VL AC+    + EGK    +
Sbjct: 530 TAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSN 589

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            +  G+   +     + ++ ++ G ++ A  +  SMP  + +V W  +L A   H
Sbjct: 590 AVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQH 643



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 175/373 (46%), Gaps = 37/373 (9%)

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            YS  G + +A   F    AR++VS+N +I+ Y+  K    AL LF  M    + P+A T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            VA+ ++C    + R G   HA+  +       N L+ TA++NMY KCG +  A+ VF  
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLER--GFFQNTLVATALLNMYGKCGTLLDAQSVFEE 118

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M   K+   W++M+  Y+ +G                   W               A+EL
Sbjct: 119 MA-EKNVVTWNAMLGVYSLQG-----------------CCWKL-------------AVEL 147

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M   G+  + +T + VL + V   AL  GK +H    E+     ++F+ TA+++ Y 
Sbjct: 148 FTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRES-EHSLDVFVNTALVNTYT 206

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCGS+  A  VF  +P   ++V  +NS+IS  +       +  +F+ M+  G + D VTF
Sbjct: 207 KCGSLTDARKVFDGMP--CRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTF 264

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           +++L AC +   ++ GK   ES+     +  +     ++ + AR    ++A  +   M  
Sbjct: 265 LSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK- 323

Query: 513 DANSVIWRALLAA 525
             N + W A++ A
Sbjct: 324 QTNLITWSAIITA 336



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MY++CGS+  A++ F KI    + V  +N +IS  + +   + ++A+F  M L G+ P+ 
Sbjct: 1   MYSRCGSLGDAVAAFGKI--RARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNA 58

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           +T V VL +C     + +G       L  G          ++++  + G L +A  + + 
Sbjct: 59  ITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEE 118

Query: 510 MPYDANSVIWRALLAACRLH 529
           M  + N V W A+L    L 
Sbjct: 119 MA-EKNVVTWNAMLGVYSLQ 137


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/637 (37%), Positives = 384/637 (60%), Gaps = 15/637 (2%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           LL  C S+ +  Q+H  +V  G++  ++S  L S+ AL     G++ +R LF +I +P+ 
Sbjct: 18  LLRRCGSVHRLNQLHAHLVVHGVDD-VTSQILASYCALPA-GGGVWYARQLFDRIPDPDR 75

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
           F++N+L+R Y  S  PQEAL L   M+ +GI+ PN FT PF+L +CAR+ +++     H 
Sbjct: 76  FVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL-PNEFTLPFLLKACARVQAWEHVMVTHG 134

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            ++K G    +F+ NAL+H Y+  G + ++ + F+  + R++VS+N++INGYAQ      
Sbjct: 135 VVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTRE 194

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A  LF  M+   +  D FT V++  AC+   +   GK  H+ +    GC   +++L  A+
Sbjct: 195 ACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCR-IDLILANAL 252

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           ++MY KCG + MA   F  M   K+  +W+SM+    +   I+ AR  F+Q+ ++ ++SW
Sbjct: 253 VDMYGKCGDLLMAHTCFDMMPF-KNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            AMIS Y Q G F +AL+L+ +M+ LG+ PDE T+ AVL AC  LG L  GK +H    +
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRD 371

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N      + L  +++DMYA+CG +DTA+S+F ++P   K V  +N+II  LA HG  + +
Sbjct: 372 NF-HNPGVALFNSLLDMYARCGQVDTAISLFSEMPS--KNVISWNAIIGALAMHGRAQDA 428

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVD 492
           +  FR M      PD +TFV +L AC+HGGL+E G+ +F++M + Y +KP +EHY CMVD
Sbjct: 429 LMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVD 488

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R G+L +A  LI+ MP   + V+W ALL ACR+H + +IG+   ++LL+LE   G  
Sbjct: 489 LLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGL 548

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           +VL+SNML ET++WE+ +++RKLM + G++K  G S IE N  +H   A    H  + ++
Sbjct: 549 FVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDM 608

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFD-VDEEEKETVV 648
            +    +   L      PN + V  D ++ EE+++++
Sbjct: 609 YVGDDRLPHHL----VFPNALAVPPDQLNVEERKSIL 641


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 348/576 (60%), Gaps = 43/576 (7%)

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N LI+ Y  FG +++A  VF+    R++VS+ T+I+ Y+  K    AL     M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            ++P+ FT+ ++  AC  L + R   Q H  + K                          
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLR---QLHCCIIK-------------------------- 91

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                   +G+       S++I  Y+R G++E A ++FD+M   DLV W+++I+G++Q  
Sbjct: 92  --------IGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNS 143

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +AL LF +M+  G    + T+ +VLRAC GL  L+ G+++H   ++   + +++ L 
Sbjct: 144 DGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK---YDQDLILN 200

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A++DMY KCGS++ A +VF ++ +  K V  ++++I+GLAQ+G  + ++ +F  M+++G
Sbjct: 201 NALLDMYCKCGSLEDANAVFVRMVE--KDVISWSTMIAGLAQNGYSKEALKLFESMKVLG 258

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
           +KP+ VT V VL ACSH GLVEEG  +F SM   +GI P  EHYGCM+DLL R GRL EA
Sbjct: 259 IKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEA 318

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
             LI  M  + ++V WRALL ACR+HRN  +   A +++L L+P     YVLLSN+ A T
Sbjct: 319 VDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANT 378

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RW +  +VR+ M + GI+K PG S+IE +  +H F+   +SHPQ +EI + L  +  KL
Sbjct: 379 QRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKL 438

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
              GYVP+T  V+ D++ E+ +  + YHSEKLA+ FGL++    +TIRI KNLRICGDCH
Sbjct: 439 MGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCH 498

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L  KLL+++ +R I++RD +R+H F+ G CSC DFW
Sbjct: 499 LFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 209/423 (49%), Gaps = 48/423 (11%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++ + N+  W T++  YS +    +AL     ML +G V PN FT+  VL +C  L 
Sbjct: 22  VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG-VRPNMFTYSSVLRACDGLF 80

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + +   Q+HC IIK GL+ D+F+R+ALI  YS +G + NA +VF+  +  DLV ++++I 
Sbjct: 81  NLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIA 137

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ  +   AL LF++M+ +       T  ++  ACT L    +G+Q H  V K     
Sbjct: 138 GFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK----Y 193

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +++L  A+++MY KCG +  A  VF  M + K   +WS+MI+G  +            
Sbjct: 194 DQDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMIAGLAQ------------ 240

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                         +GYS+     +AL+LF  M+ LGI P+ VT+V VL AC   G ++ 
Sbjct: 241 --------------NGYSK-----EALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEE 281

Query: 364 GKRLHQQYIE--NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G        E   +  GR  +    +ID+  + G +  A+ +  ++      V+ + +++
Sbjct: 282 GLYYFHSMKELFGIDPGREHY--GCMIDLLGRAGRLSEAVDLINEMECEPDAVT-WRALL 338

Query: 422 SGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           +    H      +A+    +++ L P D  T+V +    ++     +  +   +M N GI
Sbjct: 339 NACRVH--RNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGI 396

Query: 481 KPQ 483
           K +
Sbjct: 397 KKE 399


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/784 (33%), Positives = 421/784 (53%), Gaps = 82/784 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN--GLFRSRILF 65
           H+ L  L ES K+L      H QI+ + L    S+ Q ++   +    +   L  +R +F
Sbjct: 32  HNFLSLLRESSKNLIWVKSTHAQIITNSL----STDQFVATKLVKAYSDLRSLEAARYVF 87

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            Q   P   + N ++ GY +S   +E L L+  M S+ +   ++ +  F L +CA    +
Sbjct: 88  DQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNL-EVDSCSCTFALKACASSLDY 146

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G +I    ++ G+E + F+ +++I F   FG I  A +VF+G   +D+V +N++I GY
Sbjct: 147 EMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGY 206

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q      A  LF +M  S I+P   T  ++  AC  + + ++GK  H  V   LG +G+
Sbjct: 207 VQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVL-GLG-LGN 264

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++L+ T+ ++MY+K G +  A  VF  M  +++  +W++MISG  R G +  +  LF ++
Sbjct: 265 DILVLTSFVDMYSKMGDIESARWVFYKMP-TRNLVSWNAMISGCVRNGLVGESFDLFHRL 323

Query: 306 D--------------------------------------QRDLVSWTAMISGYSQVGGFS 327
                                                  + +L+  TA++  YS+ G   
Sbjct: 324 VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLK 383

Query: 328 QA-------------------------------LELFGKMESLGIHPDEVTMVAVLRACV 356
           QA                               L LF +M+  GI  + VT V+++ +C 
Sbjct: 384 QATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCA 443

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            LG+L  G+ +H  ++  + F  +I   TA++DMYAKCG I+ A  +F     + K V L
Sbjct: 444 HLGSLKRGRSIH-GHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSIS-KDVVL 501

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM- 475
           +NS+I+G   HG G  ++ ++ +M   GLKP+  TF+++L ACSH  LVE+G   F SM 
Sbjct: 502 WNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSME 561

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
            ++ I+P  +HY C+VDLL+R GR +EA  LI+ MP+   + +  ALL+ CR H+N  +G
Sbjct: 562 RDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLG 621

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
                KLL L+  +   Y++LSN+ AE  RW++   +R LM + G++K PG+S +E    
Sbjct: 622 IQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNW 681

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +H F A   SHP  +EI   L+ +   ++++GYVP+T  V+ DVDEE K  ++  HSE+L
Sbjct: 682 VHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERL 741

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+AFGL+ + +   IRITKNLR+CGDCH   K +S+I +REI+VRDA RFH F  G CSC
Sbjct: 742 AIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSC 801

Query: 716 MDFW 719
            D+W
Sbjct: 802 GDYW 805



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 19/331 (5%)

Query: 208 PDAFTFVAM--FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           P  F F+A   FS C  L D +   Q   +++  L       LL+ +  N+      +  
Sbjct: 2   PSPFHFIANKPFSTCNPLKDGQF-NQLPTIIHNFLS------LLRESSKNLI----WVKS 50

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
                 T  +S      + ++  Y+    +E AR +FDQ  Q   +   AM+ GY Q G 
Sbjct: 51  THAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGR 110

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
           + + LELFG M S  +  D  +    L+AC      + G  +    +E  +  +N F+ +
Sbjct: 111 YRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGM-EKNRFVGS 169

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           ++I    K G I  A  VF  +P   K V  +NSII G  Q G  + +  +F EM   G+
Sbjct: 170 SMISFLVKFGKIGEAQRVFDGMPN--KDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGI 227

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           KP  +T  +++ AC   G ++ GK     +L  G+   +      VD+ ++ G ++ A  
Sbjct: 228 KPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARW 287

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +   MP   N V W A+++ C   RN  +GE
Sbjct: 288 VFYKMP-TRNLVSWNAMISGCV--RNGLVGE 315


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/708 (35%), Positives = 395/708 (55%), Gaps = 49/708 (6%)

Query: 19   KSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
            + L+    +HG ++ +GL       S+ L++ +A  G    +  +  +F  ++  +   W
Sbjct: 393  EGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCG---AIESASKIFQLMEATDRISW 449

Query: 77   NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            NT++    ++ + +EA V++ S++ +  +SP+NF     L+SCA L    +G Q+HC  +
Sbjct: 450  NTIISALDQNGNCEEA-VMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAV 508

Query: 137  KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
            K+GL+ D  + N L+  Y   G +++  KVF      D VS+NT++   A  + P   + 
Sbjct: 509  KWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIV 568

Query: 197  -LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
             +F  M    + P+  TF+ + +A + L+   +GKQ HA V K+                
Sbjct: 569  KVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKH---------------- 612

Query: 256  MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-DQRDLVSWT 314
                              G+ +     +++IS Y + G +     LF  M D+RD +SW 
Sbjct: 613  ------------------GVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWN 654

Query: 315  AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
            +MISGY   G   +A++    M   G   D  T   +L AC  + AL+ G  LH   I +
Sbjct: 655  SMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRS 714

Query: 375  VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                 ++ + +A++DMY+KCG +D A  +F  + +  +    +NS+ISG A+HGLG  +I
Sbjct: 715  H-LESDVVVESALVDMYSKCGRVDYASKLFNSMTQ--RNEFSWNSMISGYARHGLGRKAI 771

Query: 435  AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
             +F EM      PD VTFV+VL ACSH GLVE G ++FE M ++GI PQ+EHY C++DLL
Sbjct: 772  EIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLL 831

Query: 495  ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR---NAKIGEIAGQKLLDLEPDHGA 551
             R G++D+    IQ MP + N++IWR +L ACR  +   N  +G  A + LL++EP +  
Sbjct: 832  GRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPV 891

Query: 552  HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
            +YVL SN  A T  WE+  + R  M  +  +K  G S++  N  +H F+A  +SHP TKE
Sbjct: 892  NYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKE 951

Query: 612  IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
            I   L  +   +++AGYVP T   ++D++EE KE ++SYHSEKLA+AF L  S S   IR
Sbjct: 952  IYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRS-SSGPIR 1010

Query: 672  ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            I KNLR+CGDCH+AF+ +S++  R+I++RD+IRFH FK G CSC D+W
Sbjct: 1011 IMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 122/531 (22%), Positives = 237/531 (44%), Gaps = 53/531 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFS 66
           H+ LL LL           +H +++  GLNH +   + L++ +A  G +  L  +  +F 
Sbjct: 64  HADLLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYA-KGAR--LAAASQVFD 120

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS--KGIVSPNNFTFPFVLNSCARLSS 124
           ++   N   W  L+ GY      +EA  ++ +ML   +    P +FTF  +L +C     
Sbjct: 121 EMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGP 180

Query: 125 FKSG--CQIHCHIIKFGLEFDLFIRNALIHFYS--IFGYINNAHKVFEGSLARDLVSYNT 180
            + G   Q+H  + K     +  + NALI  Y     G    A +VF+G+  RDL+++N 
Sbjct: 181 DRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNA 240

Query: 181 LINGYAQVKEPCPALWLFRKMQ--DSCIQ--PDAFTFVAMFS-ACTELNDPRIGKQFHAV 235
           L++ YA+  +      LF+ MQ  DS IQ  P   TF ++ + A        +  Q    
Sbjct: 241 LMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVW 300

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           V K+ GC  S++ + +A+++ +A+ GL + A+ +F ++   K+    + +I G  R+   
Sbjct: 301 VLKS-GC-SSDLYVGSALVSAFARHGLTDEAKDIFLSL-KQKNAVTLNGLIVGLVRQDFS 357

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE--VTMVAVLR 353
           E A ++F                               G   ++ ++ D   V + A+  
Sbjct: 358 EEAVKIF------------------------------VGTRNTVDVNADTYVVLLSALAE 387

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
             +    L  G+ +H   +   +    I ++  +++MYAKCG+I++A  +F ++ +    
Sbjct: 388 YSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIF-QLMEATDR 446

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           +S +N+IIS L Q+G  E ++  +  M    + P     ++ L +C+   L+  G+Q   
Sbjct: 447 IS-WNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHC 505

Query: 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
             + +G+         +V +    G + + + +  SM  + + V W  ++ 
Sbjct: 506 DAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNTMMG 555



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 116/214 (54%), Gaps = 6/214 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIV-HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +LLA L     L+   Q+H  ++ H  +  ++  + LIS +A SG    +     LF+ +
Sbjct: 588 NLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSG---DMGSCEHLFTNM 644

Query: 69  -DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            D  +   WN+++ GY  + + QEA+     M+  G +  +  TF  +LN+CA +++ + 
Sbjct: 645 SDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIM-DCCTFSIILNACASVAALER 703

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H   I+  LE D+ + +AL+  YS  G ++ A K+F     R+  S+N++I+GYA+
Sbjct: 704 GMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYAR 763

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
                 A+ +F +M  S   PD  TFV++ SAC+
Sbjct: 764 HGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACS 797



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 135/307 (43%), Gaps = 22/307 (7%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM---ESLGI 341
           +++ Y +  ++  A Q+FD+M +R+ VSWT ++SGY   G   +A  +F  M      G 
Sbjct: 102 LVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGC 161

Query: 342 HPDEVTMVAVLRACV--GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC--GSI 397
            P   T   +LRAC   G   L F  ++H   +    +  N  +  A+I MY  C  G  
Sbjct: 162 RPTSFTFGTLLRACQDGGPDRLGFAVQVH-GLVSKTEYASNTTVCNALISMYGSCTVGPP 220

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME----LMGLKPDGVTFV 453
             A  VF   P  ++ +  +N+++S  A+ G   ++  +F++M+     + L+P   TF 
Sbjct: 221 ILAQRVFDGTP--IRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFG 278

Query: 454 TVLCACSHGGLVEEG-KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           +++ A S          Q    +L  G    +     +V   AR G  DEA  +  S+  
Sbjct: 279 SLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLK- 337

Query: 513 DANSVIWRALLAAC---RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
             N+V    L+           A    +  +  +D+  D    YV+L + LAE    EE 
Sbjct: 338 QKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNAD---TYVVLLSALAEYSISEEG 394

Query: 570 RQVRKLM 576
            ++ +++
Sbjct: 395 LRIGRVV 401


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/709 (35%), Positives = 395/709 (55%), Gaps = 44/709 (6%)

Query: 14  LLESCKSLKQALQIHGQIV--HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP 71
           LL SC +L+   ++H  ++   S   HHI SS L + +A +G       S +  +     
Sbjct: 9   LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAG-DLAAAESTLATAPTSPS 67

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           +I  WN L+  +SR  SP EAL ++ ++       P++ TF   L++CARL    +G  +
Sbjct: 68  SIPAWNALLAAHSRGASPHEALRVFRAL--PPAARPDSTTFTLALSACARLGDLATGEVV 125

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
                  G   D+F+ +++++ Y+  G +++A KVF+    RD V+++T++ G+    +P
Sbjct: 126 TDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQP 185

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             A+ ++ +M+   ++ D    V +  AC    D R+G   H  + ++   +  ++++ T
Sbjct: 186 VQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRH--AMQMDVVIST 243

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           ++++MYAK GL + A RVF  M   ++  +WS++IS            QL          
Sbjct: 244 SLVDMYAKNGLFDQARRVFELMP-HRNDVSWSALIS------------QL---------- 280

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
                    +Q G   +AL LF  M+  G+HP+   +V  L AC  LG L  GK +H   
Sbjct: 281 ---------AQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFI 331

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +  +   R   + TAVIDMY+KCGS+ +A  +F K+    + +  +N +I+    HG G 
Sbjct: 332 LRTLELDR--MVGTAVIDMYSKCGSLSSAQMLFDKVVS--RDLISWNVMIACCGAHGRGR 387

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            ++++F+EM+   ++PD  TF ++L A SH GLVEEGK +F  M+N YGI+P  +H  C+
Sbjct: 388 DALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCI 447

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLLAR G ++EA GL+ S+       I  ALL+ C  +   ++GE   +K+L+L+P   
Sbjct: 448 VDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDV 507

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
               L+SN+ A    W + R+VRKLM D G +K PG S IE  G LH F+   +SHPQ +
Sbjct: 508 GVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHR 567

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           +I  M+  +  +++  GY+P T  V  D++E  KE ++S HSE+LA AFGL+N+     +
Sbjct: 568 QILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRL 627

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + KNLR+CGDCH A K +S+I  REI+VRDA RFH FK G CSC D+W
Sbjct: 628 VVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 366/616 (59%), Gaps = 44/616 (7%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  +  T+  ++  C+   + + G ++H HI   G E  +F+ N L++ Y  F  +  A 
Sbjct: 51  VFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAE 110

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            +F+    R++VS+ T+I+ Y+  K    AL     M    ++P+ FT+ ++  AC  L 
Sbjct: 111 DLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLP 169

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           + R   Q H  + K    + S++ +++A+I++Y+K                      WS 
Sbjct: 170 NLR---QLHCGIIKT--GLESDVFVRSALIDVYSK----------------------WSD 202

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +          + A  +FD+M  RDLV W ++I G++Q    ++AL LF +M+  G   D
Sbjct: 203 L----------DNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLAD 252

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           + T+ +VLRAC GL  L+ G+++H   ++   F +++ L  A+IDMY KCGS++ A S F
Sbjct: 253 QATLTSVLRACTGLALLELGRQVHVHVLK---FDQDLILNNALIDMYCKCGSLEDANSAF 309

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++ +  K V  ++++++GLAQ+G    ++ +F  M+  G +P+ +T + VL ACSH GL
Sbjct: 310 SRMVE--KDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGL 367

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           VE+G  +F SM   +G+ P  EHYGC++DLL R GRLDEA  LI  M  + +SV WR LL
Sbjct: 368 VEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            ACR+HRN  +   A +K+++LEP+    Y+LLSN+ A T RWE+  +VRK M + GI+K
Sbjct: 428 GACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRK 487

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            PG S+IE +  +H F+    SHP+ +EI   L D+  ++   GYVP+T  V+ D++ E+
Sbjct: 488 TPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQ 547

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  + YHSEKLA+ FGL+N   ++T+RI KNLRICGDCH+  K++S +  R I++RD I
Sbjct: 548 KEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPI 607

Query: 704 RFHLFKKGNCSCMDFW 719
           R+H F+ G CSC D+W
Sbjct: 608 RYHHFQDGVCSCGDYW 623



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 217/431 (50%), Gaps = 53/431 (12%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSR--SDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           N L  +  LF ++   N+  W T++  YS   +D   + L+L   M  +G V PN FT+ 
Sbjct: 104 NLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLIL---MFREG-VRPNMFTYS 159

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            VL +C  L + +   Q+HC IIK GLE D+F+R+ALI  YS +  ++NA  VF+    R
Sbjct: 160 SVLRACDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTR 216

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           DLV +N++I G+AQ  +   AL LF++M+ +    D  T  ++  ACT L    +G+Q H
Sbjct: 217 DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVH 276

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
             V K       +++L  A+I+MY KCG +  A   FS M + K   +WS+M++G  +  
Sbjct: 277 VHVLK----FDQDLILNNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMVAGLAQ-- 329

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                                   +GYS+     QALELF  M+  G  P+ +T++ VL 
Sbjct: 330 ------------------------NGYSR-----QALELFESMKESGSRPNYITVLGVLF 360

Query: 354 ACVGLGALDFGKRLHQ--QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           AC   G ++ G    +  + +  V  GR  +    +ID+  + G +D A+ + +++    
Sbjct: 361 ACSHAGLVEKGWYYFRSMKKLFGVDPGREHY--GCLIDLLGRAGRLDEAVKLIHEMECEP 418

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQ 470
            +V+ + +++     H      +A++   +++ L+P D  T++ +    ++    E+  +
Sbjct: 419 DSVT-WRTLLGACRVH--RNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAE 475

Query: 471 FFESMLNYGIK 481
             ++M N GI+
Sbjct: 476 VRKTMTNRGIR 486



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 157/334 (47%), Gaps = 13/334 (3%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFA-LSGCKNGLFRSRILFSQIDN 70
           ++L +C  L    Q+H  I+ +GL   +   S LI  ++  S   N L     +F ++  
Sbjct: 160 SVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALG----VFDEMPT 215

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            ++ +WN+++ G++++    EAL L+  M   G ++ +  T   VL +C  L+  + G Q
Sbjct: 216 RDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLA-DQATLTSVLRACTGLALLELGRQ 274

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H H++KF  + DL + NALI  Y   G + +A+  F   + +D++S++T++ G AQ   
Sbjct: 275 VHVHVLKF--DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGY 332

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF  M++S  +P+  T + +  AC+       G  +   + K  G V       
Sbjct: 333 SRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFG-VDPGREHY 391

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLFDQMDQ 307
             +I++  + G ++ A ++   M     +  W +++        ++    A +   +++ 
Sbjct: 392 GCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEP 451

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            D  ++  + + Y+    +    E+   M + GI
Sbjct: 452 EDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGI 485



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 99/198 (50%), Gaps = 8/198 (4%)

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           +A+     ME  G+  D +T   +++ C   GA+  GKR+H ++I    +   +F+   +
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVH-EHIFCKGYEPKMFVVNTL 96

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           ++MY K   ++ A  +F ++P+  + V  + ++IS  +   L + ++     M   G++P
Sbjct: 97  LNMYVKFNLLEEAEDLFDEMPE--RNVVSWTTMISAYSNK-LNDKALKCLILMFREGVRP 153

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           +  T+ +VL AC   GL    +Q    ++  G++  +     ++D+ ++   LD A G+ 
Sbjct: 154 NMFTYSSVLRACD--GL-PNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVF 210

Query: 508 QSMPYDANSVIWRALLAA 525
             MP   + V+W +++  
Sbjct: 211 DEMP-TRDLVVWNSIIGG 227


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/738 (33%), Positives = 416/738 (56%), Gaps = 51/738 (6%)

Query: 23  QALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           +  Q H +I+ SG  N    S++LI+ ++   C N    + ++   I +P I+ +++L+ 
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFND---ADLVLQSIPDPTIYSFSSLIY 89

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
             +++    +++ +++ M S G++ P++   P +   CA LS+FK G QIHC     GL+
Sbjct: 90  ALTKAKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLD 148

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFE--------------------------------- 168
            D F++ ++ H Y   G + +A KVF+                                 
Sbjct: 149 MDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEM 208

Query: 169 --GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
               +  ++VS+N +++G+ +      A+ +F+K+      PD  T  ++  +  +    
Sbjct: 209 ESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +G+  H  V K  G +    ++ +A+I+MY K G +     +F+   M ++    ++ I
Sbjct: 269 NMGRLIHGYVIKQ-GLLKDKCVI-SAMIDMYGKSGHVYGIISLFNQFEMMEAGVC-NAYI 325

Query: 287 SGYTREGKIERARQLFD----QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +G +R G +++A ++F+    Q  + ++VSWT++I+G +Q G   +ALELF +M+  G+ 
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+ VT+ ++L AC  + AL  G+  H  +   V    N+ + +A+IDMYAKCG I+ +  
Sbjct: 386 PNHVTIPSMLPACGNIAALGHGRSTHG-FAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +P   K +  +NS+++G + HG  +  +++F  +    LKPD ++F ++L AC   
Sbjct: 445 VFNMMPT--KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GL +EG ++F+ M   YGIKP++EHY CMV+LL R G+L EAY LI+ MP++ +S +W A
Sbjct: 503 GLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGA 562

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL +CRL  N  + EIA +KL  LEP++   YVLLSN+ A    W E   +R  M+  G+
Sbjct: 563 LLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K PG S+I+    ++  LA  KSHPQ  +I   + +++ +++ +G+ PN    + DV+E
Sbjct: 623 KKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEE 682

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           +E+E ++  HSEKLA+ FGL+N+     +++ KNLRICGDCH   K +S    REI +RD
Sbjct: 683 QEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRD 742

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH FK G CSC DFW
Sbjct: 743 TNRFHHFKDGICSCGDFW 760


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/659 (36%), Positives = 360/659 (54%), Gaps = 40/659 (6%)

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           +LF +I   +   +NTL+ GY +     E++ L+  M   G   P++FTF  VL +   L
Sbjct: 205 VLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH-QPSDFTFSGVLKAVVGL 263

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
             F  G Q+H   +  G   D  + N ++ FYS    +     +F+     D VSYN +I
Sbjct: 264 HDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVI 323

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y+Q  +   +L  FR+MQ        F F  M S    L+  ++G+Q H      L  
Sbjct: 324 SSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LAT 381

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S + +  ++++MYAKC +   AE +F +                              
Sbjct: 382 ADSILHVGNSLVDMYAKCEMFEEAELIFKS------------------------------ 411

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
             + QR  VSWTA+ISGY Q G     L+LF KM    +  D+ T   VL+A     +L 
Sbjct: 412 --LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK+LH   I +     N+F  + ++DMYAKCGSI  A+ VF ++P   +    +N++IS
Sbjct: 470 LGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD--RNAVSWNALIS 526

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
             A +G GE +I  F +M   GL+PD V+ + VL ACSH G VE+G ++F++M   YGI 
Sbjct: 527 AHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGIT 586

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+ +HY CM+DLL R+GR  EA  L+  MP++ + ++W ++L ACR+H+N  + E A +K
Sbjct: 587 PKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEK 646

Query: 542 LLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           L  +E     A YV +SN+ A    WE+ R V+K M + GI+K P +S++E N  +H F 
Sbjct: 647 LFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFS 706

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           ++ ++HP   EI   + ++T +++  GY P+T  VV DVDE+ K   + YHSE+LA+AF 
Sbjct: 707 SNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFA 766

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI++     I + KNLR C DCH A KL+S+I +REI VRD  RFH F +G CSC D+W
Sbjct: 767 LISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 13/324 (4%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q+H   V +G +   S  +Q++ F++     + +  +R+LF ++   +   +N ++  YS
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSK---HDRVLETRMLFDEMPELDFVSYNVVISSYS 327

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           ++D  + +L  +  M   G     NF F  +L+  A LSS + G Q+HC  +    +  L
Sbjct: 328 QADQYEASLHFFREMQCMGF-DRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSIL 386

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
            + N+L+  Y+       A  +F+    R  VS+  LI+GY Q       L LF KM+ S
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGS 446

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            ++ D  TF  +  A        +GKQ HA + ++      N+   + +++MYAKCG + 
Sbjct: 447 NLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL--ENVFSGSGLVDMYAKCGSIK 504

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD----QRDLVSWTAMISGY 320
            A +VF  M   ++  +W+++IS +   G  E A   F +M     Q D VS   +++  
Sbjct: 505 DAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTAC 563

Query: 321 SQVGGFSQALELFGKMESL-GIHP 343
           S  G   Q  E F  M  + GI P
Sbjct: 564 SHCGFVEQGTEYFQAMSPIYGITP 587



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 171/385 (44%), Gaps = 50/385 (12%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--QDSC 205
           N +I  +   G +++A  +F+    R +V++  L+  YA+      A  LFR+M    SC
Sbjct: 83  NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-----NLGCVGSNMLLKTAVINMYAKC 260
             PD  TF  +   C +        Q HA   K     N     SN+LLK+         
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS--------- 193

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
                                       Y    +++ A  LF+++ ++D V++  +I+GY
Sbjct: 194 ----------------------------YCEVRRLDLACVLFEEIPEKDSVTFNTLITGY 225

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            + G +++++ LF KM   G  P + T   VL+A VGL     G++LH   +    F R+
Sbjct: 226 EKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSV-TTGFSRD 284

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
             +   ++D Y+K   +     +F ++P+ L  VS +N +IS  +Q    E S+  FREM
Sbjct: 285 ASVGNQILDFYSKHDRVLETRMLFDEMPE-LDFVS-YNVVISSYSQADQYEASLHFFREM 342

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG-CMVDLLARDGR 499
           + MG       F T+L   ++   ++ G+Q     L       + H G  +VD+ A+   
Sbjct: 343 QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL-LATADSILHVGNSLVDMYAKCEM 401

Query: 500 LDEAYGLIQSMPYDANSVIWRALLA 524
            +EA  + +S+P    +V W AL++
Sbjct: 402 FEEAELIFKSLP-QRTTVSWTALIS 425



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 8/255 (3%)

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G ++ A +V+  M   K+T + ++MISG+ + G +  AR LFD M  R +V+WT ++  Y
Sbjct: 62  GQVSAARKVYDEMP-HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWY 120

Query: 321 SQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           ++   F +A +LF +M   S    PD VT   +L  C      +   ++H  +   + F 
Sbjct: 121 ARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH-AFAVKLGFD 179

Query: 379 RNIFLTTA--VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
            N FLT +  ++  Y +   +D A  +F +IP+  K    FN++I+G  + GL   SI +
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE--KDSVTFNTLITGYEKDGLYTESIHL 237

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
           F +M   G +P   TF  VL A         G+Q     +  G          ++D  ++
Sbjct: 238 FLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSK 297

Query: 497 DGRLDEAYGLIQSMP 511
             R+ E   L   MP
Sbjct: 298 HDRVLETRMLFDEMP 312


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 360/614 (58%), Gaps = 22/614 (3%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH--KVFEGSLAR 173
           L+ C  L+  K   QIH H+++ GL+   +I   LI   +  G   + +  +V E    R
Sbjct: 57  LDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFR 113

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +   +  +I GY    +   A+ ++  M+   I P +FTF A+  AC  + D  +G+QFH
Sbjct: 114 NPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFH 173

Query: 234 AVVYKNLG-C---VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           A  ++  G C   VG+ M      I+MY KCG +  A +VF  M   +   +W+ +I+ Y
Sbjct: 174 AQTFRLRGFCFVYVGNTM------IDMYVKCGSIVCARKVFDEMP-ERDVISWTELIAAY 226

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            R G +E A  LF+ +  +D+V+WTAM++G++Q     +ALE F +ME  GI  DEVT+ 
Sbjct: 227 ARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVA 286

Query: 350 AVLRACVGLGALDFGKRLHQ-QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             + AC  LGA  +  R  Q           ++ + +A+IDMY+KCG+++ A++VF  + 
Sbjct: 287 GYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--VS 344

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEE 467
            N K V  ++S+I GLA HG  + ++ +F  M     +KP+ VTFV  L ACSH GLV++
Sbjct: 345 MNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQ 404

Query: 468 GKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+Q F SM   +G++P  +HY CMVDLL R GRL EA  LI++M  + +  +W ALL AC
Sbjct: 405 GRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGAC 464

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H N  I EIA + L +LEPD   +Y+LLSN+ +    W     VRKL+ + G++K P 
Sbjct: 465 RIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPA 524

Query: 587 WSYI-EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
            S++ + NG +H+F     +HP +K+I+  L+++  +L + GY P+   V +DV +  K 
Sbjct: 525 VSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKR 584

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  H+EKLALAF L+ +    TI+I KNLR+C DCH+  +L SE+  R I++RD +RF
Sbjct: 585 LILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRF 644

Query: 706 HLFKKGNCSCMDFW 719
           H F+ G CSC DFW
Sbjct: 645 HHFRSGACSCGDFW 658



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 186/429 (43%), Gaps = 67/429 (15%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFS- 66
           SSL++ L+ C +L Q  QIHG ++  GL+      ++LI      G     +  R++   
Sbjct: 51  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPV 110

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           Q  NP  F+W  ++RGY+      EA+ +Y  M  K  ++P +FTF  +L +C  +    
Sbjct: 111 QFRNP--FLWTAVIRGYTIEGKFDEAIAMYGCM-RKEEITPVSFTFSALLKACGSMGDLN 167

Query: 127 SGCQIH---------CHIIKFGLEFDLFIR----------------------NALIHFYS 155
            G Q H         C +       D++++                        LI  Y+
Sbjct: 168 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYA 227

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G + +A  +FE    +D+V++  ++ G+AQ  +P  AL  F +M+ S I+ D  T   
Sbjct: 228 RVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 287

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
             SAC +L   +   +   +  K+      ++++ +A+I+MY+KCG +  A  VF +M  
Sbjct: 288 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMN- 346

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
           +K+  ++SSMI G    G+ + A  LF  M     V+ TA                    
Sbjct: 347 NKNVFSYSSMILGLATHGRAQEALDLFHYM-----VTQTA-------------------- 381

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
                I P+ VT V  L AC   G +D G+++     +           T ++D+  + G
Sbjct: 382 -----IKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAG 436

Query: 396 SIDTALSVF 404
            +  AL + 
Sbjct: 437 RLQEALELI 445


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/713 (34%), Positives = 401/713 (56%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLL L  +   L     +H Q+   G++   ++++ L + +A   C+      R+ F +
Sbjct: 63  TSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYA--KCRRPADARRV-FDR 119

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   WN L+ GY+R+   + A+ +   M  +    P++ T   VL +CA   +  +
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
             + H   I+ GLE  + +  A++  Y   G I  A  VF+    ++ VS+N +I+GYAQ
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL LF +M +  +     + +A   AC EL     G + H ++ + +G + SN+
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR-IG-LDSNV 297

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+I MY+KC                                 +++ A  +FD++D+
Sbjct: 298 SVMNALITMYSKCK--------------------------------RVDLASHVFDELDR 325

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R  VSW AMI G +Q G    A+ LF +M+   + PD  T+V+V+ A   +      + +
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   I  +   +++++ TA+IDMYAKCG ++ A  +F    +  + V  +N++I G   H
Sbjct: 386 HGYSIR-LHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE--RHVITWNAMIHGYGSH 442

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           G G+ ++ +F EM+ +G+ P+  TF++VL ACSH GLV+EG+++F SM  +YG++P MEH
Sbjct: 443 GFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEH 502

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YG MVDLL R G+LDEA+  IQ MP D    ++ A+L AC+LH+N ++ E + QK+ +L 
Sbjct: 503 YGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P  G ++VLL+N+ A    W++  +VR  M+ +G+QK PGWS I+    +H F +   +H
Sbjct: 563 PQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNH 622

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            Q KEI   L  +  ++K+ GYVP+T   + DV+++ K  +++ HSEKLA+AFGLI +  
Sbjct: 623 QQAKEIYSRLAKLIEEIKAVGYVPDT-DSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAP 681

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             TI+I KNLR+C DCH A KL+S +  REI++RD  RFH FK G CSC D+W
Sbjct: 682 GTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 210/441 (47%), Gaps = 45/441 (10%)

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           SD P  AL  + +M S G   P   TF  +L  CA      +G  +H  +   G++ +  
Sbjct: 38  SDLPA-ALAAFVAMSSAG-APPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEAL 95

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DS 204
              AL + Y+      +A +VF+    RD V++N L+ GYA+      A+ +  +MQ + 
Sbjct: 96  AATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE 155

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK--TAVINMYAKCGL 262
             +PD+ T V++  AC         ++ HA   ++    G   L+   TA+++ Y KCG 
Sbjct: 156 GERPDSITLVSVLPACANARALAACREAHAFAIRS----GLEELVNVATAILDAYCKCGD 211

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A  VF  M  +K++ +W++MI GY + G            D R              
Sbjct: 212 IRAARVVFDWMP-TKNSVSWNAMIDGYAQNG------------DSR-------------- 244

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                +AL LF +M   G+   +V+++A L+AC  LG LD G R+H+  +  +    N+ 
Sbjct: 245 -----EALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSNVS 298

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +  A+I MY+KC  +D A  VF ++ +  +T   +N++I G AQ+G  E ++ +F  M+L
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDR--RTQVSWNAMILGCAQNGCSEDAVRLFTRMQL 356

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
             +KPD  T V+V+ A +      + +      +   +   +     ++D+ A+ GR++ 
Sbjct: 357 ENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNI 416

Query: 503 AYGLIQSMPYDANSVIWRALL 523
           A  L  S   + + + W A++
Sbjct: 417 ARILFNS-ARERHVITWNAMI 436


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/608 (39%), Positives = 362/608 (59%), Gaps = 11/608 (1%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L S AR S   +  ++H  IIK GL     I N L++ Y   G I +A ++F+    RD 
Sbjct: 11  LCSAARQSPLLAK-KLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDP 69

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI--GKQFH 233
           V++ +L+        P  AL + R +  +   PD F F ++  AC  L    +  GKQ H
Sbjct: 70  VAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVH 129

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A  +  L     + ++K+++I+MYAK GL +    VF ++  S ++ +W++MISGY R G
Sbjct: 130 ARFF--LSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSIS-SLNSISWTTMISGYARSG 186

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVAVL 352
           +   A +LF Q   R+L +WTA+ISG  Q G    A  LF +M   GI   D + + +V+
Sbjct: 187 RKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVV 246

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  L   + GK++H   I  + +   +F++ A+IDMYAKC  +  A  +F ++ +  K
Sbjct: 247 GACANLALWELGKQMHGVVI-TLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCR--K 303

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + SII G AQHG  E ++A++ EM L G+KP+ VTFV ++ ACSH GLV +G+  F
Sbjct: 304 DVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLF 363

Query: 473 ESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            +M+ ++GI P ++HY C++DL +R G LDEA  LI++MP + +   W ALL++C+ H N
Sbjct: 364 RTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGN 423

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++       LL+L+P+  + Y+LLSN+ A    WE+  +VRKLM     +K PG+S I+
Sbjct: 424 TQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCID 483

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
                H F A + SHP   EI  +++++  +++  GY P+T  V+ D+D++EKE  + +H
Sbjct: 484 LGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWH 543

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+A+GL+ +     IRI KNLR+CGDCH   KL+S I  REI VRDA R+H FK G
Sbjct: 544 SERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDG 603

Query: 712 NCSCMDFW 719
           NCSC DFW
Sbjct: 604 NCSCNDFW 611



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 231/515 (44%), Gaps = 86/515 (16%)

Query: 18  CKSLKQ----ALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRI-LFSQIDN 70
           C + +Q    A ++H QI+ +GLN H  I ++ L ++      K GL +  + LF  +  
Sbjct: 12  CSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAY-----GKCGLIQDALQLFDALPR 66

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF--KSG 128
            +   W +L+   + S+ P  AL +  S+LS G   P++F F  ++ +CA L     K G
Sbjct: 67  RDPVAWASLLTACNLSNRPHRALSISRSLLSTGF-HPDHFVFASLVKACANLGVLHVKQG 125

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H          D  ++++LI  Y+ FG  +    VF+   + + +S+ T+I+GYA+ 
Sbjct: 126 KQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARS 185

Query: 189 KEPCPALWLFRK-----------MQDSCIQP----DAF-TFVAMFSACTELNDP------ 226
                A  LFR+           +    +Q     DAF  FV M      + DP      
Sbjct: 186 GRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSV 245

Query: 227 ----------RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
                      +GKQ H VV   LG   S + +  A+I+MYAKC  +  A+ +F  M   
Sbjct: 246 VGACANLALWELGKQMHGVVI-TLG-YESCLFISNALIDMYAKCSDLVAAKYIFCEM-CR 302

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K   +W+S+I G  + G+ E                               +AL L+ +M
Sbjct: 303 KDVVSWTSIIVGTAQHGQAE-------------------------------EALALYDEM 331

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ P+EVT V ++ AC   G +  G+ L +  +E+     ++   T ++D++++ G 
Sbjct: 332 VLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGH 391

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTV 455
           +D A ++   +P N    + + +++S   +H  G T +AV     L+ LKP D  +++ +
Sbjct: 392 LDEAENLIRTMPVNPDEPT-WAALLSSCKRH--GNTQMAVRIADHLLNLKPEDPSSYILL 448

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490
               +  G+ E+  +  + M+    K +   Y C+
Sbjct: 449 SNIYAGAGMWEDVSKVRKLMMTLEAK-KAPGYSCI 482


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/717 (35%), Positives = 402/717 (56%), Gaps = 50/717 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +L+  L  C  ++QA  IH  +  SGL    + S+ L S +A  G    L +++ +F + 
Sbjct: 230 TLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLG---HLDQAKEVFDRA 286

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++  WN ++  Y++     EA +L+  ML +GI  P+  T    +N+    SS + G
Sbjct: 287 AERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI-PPSKVTL---VNASTGCSSLRFG 342

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH   ++ GL+ D+ + NAL+  Y+  G    A  +FEG +  + VS+NT+I G +Q 
Sbjct: 343 RMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEG-IPGNAVSWNTMIAGSSQK 401

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT----ELNDPRIGKQFHAVVYKNLGC-V 243
            +   AL LF++MQ   + P   T++ +  A      E      G++ H+ +   + C  
Sbjct: 402 GQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRI---VSCGY 458

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S   + TAV+ MYA CG ++ A   F    M                            
Sbjct: 459 ASEPAIGTAVVKMYASCGAIDEAAASFQRGAME--------------------------- 491

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
             D+ D+VSW A+IS  SQ G   +AL  F +M+  G+ P+++T VAVL AC G  AL  
Sbjct: 492 --DRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTE 549

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G  +H  ++ +     N+F+ TA+  MY +CGS+++A  +F K+    + V +FN++I+ 
Sbjct: 550 GVIVHD-HLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVE-RDVVIFNAMIAA 607

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKP 482
            +Q+GL   ++ +F  M+  G +PD  +FV+VL ACSHGGL +EG + F SM  +YGI P
Sbjct: 608 YSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAP 667

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
             +HY C VD+L R G L +A  LI+ M      ++W+ LL ACR +R+   G +A   +
Sbjct: 668 SEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMV 727

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            +L+P   + YV+LSN+LA   +W+EA +VR  M+  G++K  G S+IE    +H F+A 
Sbjct: 728 RELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAG 787

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            +SHP+++EI   L+ +  +++  GYVP+T  V+  VDE EKE ++  HSE+LA+A G++
Sbjct: 788 DRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVM 847

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S S +T+R+ KNLR+C DCH A K +S+I  +EI+VRD  RFH F  G+CSC D+W
Sbjct: 848 SS-STDTVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 152/576 (26%), Positives = 266/576 (46%), Gaps = 84/576 (14%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           L Q  +IH +IV  GL   + +  L  +     C++ L     +FS+++  +   W T++
Sbjct: 45  LSQGRRIHARIVSLGLEEELGNHLLRLYLK---CES-LGDVEEVFSRLEVRDEASWTTII 100

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
             Y+     + A+ ++  M  +G V  +  TF  VL +CARL     G  IH  I++ GL
Sbjct: 101 TAYTEHGQAKRAIWMFHRMQQEG-VRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGL 159

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           E    + N L+H Y   G + +A  +FE  + RDLVS+N  I   AQ  +   AL LF++
Sbjct: 160 EGKSVLANLLLHIYGSCGCVASAMLLFE-RMERDLVSWNAAIAANAQSGDLDMALELFQR 218

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           MQ   ++P   T V   S C ++   R  +  H++V ++   +   +++ TA+ + YA+ 
Sbjct: 219 MQLEGVRPARITLVITLSVCAKI---RQARAIHSIVRES--GLEQTLVVSTALASAYARL 273

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ------------- 307
           G ++ A+ VF      +   +W++M+  Y + G +  A  LF +M               
Sbjct: 274 GHLDQAKEVFDR-AAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNA 332

Query: 308 -----------------------RDLVSWTAMISGYSQVG-------------------- 324
                                  RD+V   A++  Y++ G                    
Sbjct: 333 STGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVSWN 392

Query: 325 ----GFSQ------ALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQ 370
               G SQ      ALELF +M+  G+ P   T + +L A         A+  G++LH +
Sbjct: 393 TMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR 452

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKTVSLFNSIISGLAQHGL 429
            + +  +     + TAV+ MYA CG+ID A + F +   ++   V  +N+IIS L+QHG 
Sbjct: 453 IV-SCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGH 511

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
           G+ ++  FR M+L G+ P+ +T V VL AC+    + EG    + + + G++  +     
Sbjct: 512 GKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATA 571

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +  +  R G L+ A  + + +  + + VI+ A++AA
Sbjct: 572 LASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           ++F +++ RD  SWT +I+ Y++ G   +A+ +F +M+  G+  D VT +AVL+AC  LG
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L  G+ +H   +E+ + G+++ L   ++ +Y  CG + +A+ +F ++ ++L +   +N+
Sbjct: 143 DLSQGRSIHAWIVESGLEGKSV-LANLLLHIYGSCGCVASAMLLFERMERDLVS---WNA 198

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
            I+  AQ G  + ++ +F+ M+L G++P  +T V  L  C+    + + +     +   G
Sbjct: 199 AIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESG 255

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           ++  +     +    AR G LD+A  +      + + V W A+L A   H
Sbjct: 256 LEQTLVVSTALASAYARLGHLDQAKEVFDRAA-ERDVVSWNAMLGAYAQH 304


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/713 (34%), Positives = 401/713 (56%), Gaps = 43/713 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLL L  +   L     +H Q+   G++   ++++ L + +A   C+      R+ F +
Sbjct: 63  TSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYA--KCRRPADARRV-FDR 119

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   WN L+ GY+R+   + A+ +   M  +    P++ T   VL +CA   +  +
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
             + H   I+ GLE  + +  A++  Y   G I  A  VF+    ++ VS+N +I+GYAQ
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL LF +M +  +     + +A   AC EL     G + H ++ + +G + SN+
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR-IG-LDSNV 297

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            +  A+I MY+KC                                 +++ A  +FD++D+
Sbjct: 298 SVMNALITMYSKCK--------------------------------RVDLASHVFDELDR 325

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R  VSW AMI G +Q G    A+ LF +M+   + PD  T+V+V+ A   +      + +
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   I  +   +++++ TA+IDMYAKCG ++ A  +F    +  + V  +N++I G   H
Sbjct: 386 HGYSIR-LHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE--RHVITWNAMIHGYGSH 442

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           G G+ ++ +F EM+ +G+ P+  TF++VL ACSH GLV+EG+++F SM  +YG++P MEH
Sbjct: 443 GFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEH 502

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YG MVDLL R G+LDEA+  IQ MP D    ++ A+L AC+LH+N ++ E + QK+ +L 
Sbjct: 503 YGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P  G ++VLL+N+ A    W++  +VR  M+ +G+QK PGWS I+    +H F +   +H
Sbjct: 563 PQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNH 622

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            Q KEI   L  +  ++K+ GYVP+T   + DV+++ K  +++ HSEKLA+AFGLI +  
Sbjct: 623 QQAKEIYSRLAKLIEEIKAVGYVPDT-DSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAP 681

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             TI+I KNLR+C DCH A KL+S +  REI++RD  RFH FK G CSC D+W
Sbjct: 682 GTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 212/443 (47%), Gaps = 45/443 (10%)

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           +RSD P  AL  + +M S G   P   TF  +L  CA      +G  +H  +   G++ +
Sbjct: 36  ARSDLPA-ALAAFVAMSSAG-APPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSE 93

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ- 202
                AL + Y+      +A +VF+    RD V++N L+ GYA+      A+ +  +MQ 
Sbjct: 94  ALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQE 153

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK--TAVINMYAKC 260
           +   +PD+ T V++  AC         ++ HA   ++    G   L+   TA+++ Y KC
Sbjct: 154 EEGERPDSITLVSVLPACANARALAACREAHAFAIRS----GLEELVNVATAILDAYCKC 209

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +  A  VF  M  +K++ +W++MI GY + G            D R            
Sbjct: 210 GDIRAARVVFDWMP-TKNSVSWNAMIDGYAQNG------------DSR------------ 244

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                  +AL LF +M   G+   +V+++A L+AC  LG LD G R+H+  +  +    N
Sbjct: 245 -------EALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSN 296

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + +  A+I MY+KC  +D A  VF ++ +  +T   +N++I G AQ+G  E ++ +F  M
Sbjct: 297 VSVMNALITMYSKCKRVDLASHVFDELDR--RTQVSWNAMILGCAQNGCSEDAVRLFTRM 354

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
           +L  +KPD  T V+V+ A +      + +      +   +   +     ++D+ A+ GR+
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 501 DEAYGLIQSMPYDANSVIWRALL 523
           + A  L  S   + + + W A++
Sbjct: 415 NIARILFNS-ARERHVITWNAMI 436


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/629 (37%), Positives = 363/629 (57%), Gaps = 61/629 (9%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +LN C    +F+ G ++H H+IK      +F+R  LI  Y+    + +AH VF+    R+
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERN 308

Query: 175 LVSYNTLINGYAQVKEPCPALWLF--------------RKMQDS-------CIQPDAFTF 213
           +VS+  +I+ Y+Q      AL LF               K++ S       C +P+ FTF
Sbjct: 309 VVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTF 368

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             + ++CT      +G+Q H+++ K                        +N  + VF   
Sbjct: 369 ATVLTSCTSSLGFILGRQIHSLIIK------------------------LNYEDHVF--- 401

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
                    SS++  Y ++GKI  AR +F+ + +RD+VS TA+ISGY+Q+G   +ALELF
Sbjct: 402 -------VGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELF 454

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
            +++  G+  + VT   VL A  GL ALD GK++H   + + +    + L  ++IDMY+K
Sbjct: 455 RRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEI-PSFVVLQNSLIDMYSK 513

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTF 452
           CG++  +  +F  + +  +TV  +N+++ G ++HG G   + +F  M E   +KPD VT 
Sbjct: 514 CGNLTYSRRIFDTMYE--RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTI 571

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIK--PQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           + VL  CSHGGL ++G   F  M +  I+  P+MEHYGC+VDLL R GR++EA+  I+ M
Sbjct: 572 LAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKM 631

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P++  + IW +LL ACR+H N  IGE AGQ+LL++EP +  +YV+LSN+ A   RWE+  
Sbjct: 632 PFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVS 691

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
            +R LM    + K PG S IE +  LH F AS +SHP+ +EI + +K+++   K  GYVP
Sbjct: 692 SLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVP 751

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +   V+ DVDEE+KE ++  HSEKLAL+FGLI S +   IR+ KNLRIC DCH   K +S
Sbjct: 752 DLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYIS 811

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++Y RE+ +RD  RFH    G CSC D+W
Sbjct: 812 KVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 210/466 (45%), Gaps = 76/466 (16%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFF------ALSGCKNGLFRSRILFS 66
           A+L  C + K+A +  GQ VH+   H I +  L S F       L    + L  +  +F 
Sbjct: 248 AILNECVN-KRAFR-EGQRVHA---HMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFD 302

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV--------------------S 106
           ++   N+  W  ++  YS+     +AL L+ + +   +                      
Sbjct: 303 EMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTE 362

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           PN FTF  VL SC     F  G QIH  IIK   E  +F+ ++L+  Y+  G I+ A  V
Sbjct: 363 PNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTV 422

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           FE    RD+VS   +I+GYAQ+     AL LFR++Q   ++ +  T+  + +A + L   
Sbjct: 423 FECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAAL 482

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +GKQ H  V ++   + S ++L+ ++I+MY+KCG +  + R+F TM   ++  +W++M+
Sbjct: 483 DLGKQVHNHVLRSE--IPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAML 539

Query: 287 SGYTREGKIERARQLFDQMDQR-----DLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            GY++ G+     +LF  M +      D V+  A++SG S  G   + L +F  M S   
Sbjct: 540 VGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSS--- 596

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
                            G ++   ++         +G        V+D+  + G ++ A 
Sbjct: 597 -----------------GKIEVEPKMEH-------YG-------CVVDLLGRSGRVEEAF 625

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
               K+P    T +++ S++     H      I  F   +L+ ++P
Sbjct: 626 EFIKKMPFE-PTAAIWGSLLGACRVH--SNVDIGEFAGQQLLEIEP 668



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 24/183 (13%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           A+L  CV   A   G+R+H   I+   +  ++FL T +I +Y KC S+  A +VF ++P+
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTR-YLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPE 306

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVF---REMELMGL------------------KPD 448
             + V  + ++IS  +Q G    ++ +F    ++ L G+                  +P+
Sbjct: 307 --RNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
             TF TVL +C+       G+Q    ++    +  +     ++D+ A+DG++ EA  + +
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFE 424

Query: 509 SMP 511
            +P
Sbjct: 425 CLP 427


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/692 (35%), Positives = 387/692 (55%), Gaps = 55/692 (7%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ-IHCH 134
           +N ++  +S S     AL L+  M   G V P+ FTF  VL + + ++  ++ CQ +HC 
Sbjct: 98  YNAMITAFSHSHDGHAALQLFVQMKRLGFV-PDPFTFSSVLGALSLIADEETHCQQLHCE 156

Query: 135 IIKFGLEFDLFIRNALIHFYS-------------------------------------IF 157
           + K+G      + NAL+  Y                                      I 
Sbjct: 157 VFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIA 216

Query: 158 GYINN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
           GY+ N     A ++ EG      V++N +I+GY        A  L R+M    IQ D +T
Sbjct: 217 GYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYT 276

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL--KTAVINMYAKCGLMNMAERVF 270
           + ++ SA +      IG+Q HA V + +     + +L    A+I +Y +CG +  A RVF
Sbjct: 277 YTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVF 336

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             M + K   +W++++SG     +IE A  +F +M  R L++WT MISG +Q G   + L
Sbjct: 337 DKMPV-KDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGL 395

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT--AVI 388
           +LF +M+  G+ P +      + +C  LG+LD G++LH Q I+    G +  L+   A+I
Sbjct: 396 KLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQ---LGHDSSLSVGNALI 452

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
            MY++CG ++ A +VF  +P  + +VS +N++I+ LAQHG G  +I ++ +M    + PD
Sbjct: 453 TMYSRCGLVEAADTVFLTMPY-VDSVS-WNAMIAALAQHGHGVQAIQLYEKMLKEDILPD 510

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            +TF+T+L ACSH GLV+EG+ +F++M + YGI P+ +HY  ++DLL R G   EA  + 
Sbjct: 511 RITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVT 570

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
           +SMP++  + IW ALLA C +H N ++G  A  +LL+L P     Y+ LSNM A   +W+
Sbjct: 571 ESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWD 630

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           E  +VRKLM + G++K PG S+IE    +H FL     HP+   +   L+ +  +++  G
Sbjct: 631 EVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLG 690

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           YVP+T  V+ D++ E+KE  +S HSEKLA+ +G++      TIR+ KNLRICGDCH AFK
Sbjct: 691 YVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFK 750

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +S++  REI+VRD  RFH F+ G CSC ++W
Sbjct: 751 YISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 217/462 (46%), Gaps = 50/462 (10%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D+     ++  YS  G I  AH++F  +    RD VSYN +I  ++   +   AL LF +
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIG-KQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           M+     PD FTF ++  A + + D     +Q H  V+K  G +    +L  A+++ Y  
Sbjct: 121 MKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFK-WGALSVPSVLN-ALMSCYVS 178

Query: 260 CG---------LMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           C          LM  A ++F      +    AW+++I+GY R   +  AR+L + M    
Sbjct: 179 CASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHI 238

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            V+W AMISGY   G + +A +L  +M SLGI  DE T  +V+ A    G  + G+++H 
Sbjct: 239 AVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHA 298

Query: 370 QYIENVVFGRNIFLTT---AVIDMYAKCGSIDTALSVFYKIP--------------KNLK 412
             +  VV     F+ +   A+I +Y +CG +  A  VF K+P               N +
Sbjct: 299 YVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNAR 358

Query: 413 TVSLFNSI---------------ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
            +   NSI               ISGLAQ+G GE  + +F +M+L GL+P    +   + 
Sbjct: 359 RIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIA 418

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           +CS  G ++ G+Q    ++  G    +     ++ + +R G ++ A  +  +MPY  +SV
Sbjct: 419 SCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSV 477

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLL--DLEPDHGAHYVLLS 557
            W A++AA   H +        +K+L  D+ PD      +LS
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILS 519



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 160/341 (46%), Gaps = 19/341 (5%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFA-LSGCKNG--LFRSRIL 64
           +++L+ L   C  L +A ++  ++             L+S+ A LSGC N   +  +  +
Sbjct: 316 NNALITLYTRCGKLVEARRVFDKM---------PVKDLVSWNAILSGCVNARRIEEANSI 366

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++   ++  W  ++ G +++   +E L L+  M  +G+  P ++ +   + SC+ L S
Sbjct: 367 FREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGL-EPCDYAYAGAIASCSVLGS 425

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             +G Q+H  II+ G +  L + NALI  YS  G +  A  VF      D VS+N +I  
Sbjct: 426 LDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAA 485

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            AQ      A+ L+ KM    I PD  TF+ + SAC+     + G+ +   +    G + 
Sbjct: 486 LAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYG-IT 544

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQ 300
                 + +I++  + G+ + A+ V  +M        W ++++G    G +E     A +
Sbjct: 545 PEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADR 604

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           L + M Q+D  ++ ++ + Y+ +G + +   +   M   G+
Sbjct: 605 LLELMPQQD-GTYISLSNMYAALGQWDEVARVRKLMRERGV 644


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/688 (34%), Positives = 384/688 (55%), Gaps = 45/688 (6%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG--C 129
           +  + N +M  ++R+     A+ ++ ++L  G + P++++F  ++++  ++ +  +    
Sbjct: 126 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 185

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYS-----------------------------IFGYI 160
           Q+HC ++K G    L + NALI  Y                              + GY+
Sbjct: 186 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 245

Query: 161 -----NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
                N A  VFE    +  V +N +I+GY Q      A  LFR+M    +  D FTF +
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 305

Query: 216 MFSACTELNDPRIGKQFHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + SAC        GK  H  + +   N     + + +  A++ +Y+K G + +A+R+F T
Sbjct: 306 VLSACANAGFFVHGKSVHGQIIRLQPNF-VPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M + K   +W++++SGY   G +++A ++F  M  ++ +SW  M+SGY   G    AL+L
Sbjct: 365 MNL-KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKL 423

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M +  + P + T    + AC  LGAL  G++LH   ++   F  +     A++ MYA
Sbjct: 424 FNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNSAGNALLTMYA 482

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCG+++ A  VF  +P NL +VS +N++IS L QHG G  ++ +F +M   G+ PD ++F
Sbjct: 483 KCGAVNDARLVFLVMP-NLDSVS-WNAMISALGQHGHGREALELFDQMVAEGIDPDRISF 540

Query: 453 VTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           +T+L AC+H GLV+EG  +FESM  ++GI P  +HY  ++DLL R GR+ EA  LI++MP
Sbjct: 541 LTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP 600

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
           ++    IW A+L+ CR + + + G  A  +L  + P H   Y+LLSN  +   RW +A +
Sbjct: 601 FEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAAR 660

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRKLM D G++K PG S+IE    +H FL     HP+ +E+   L+ +  +++  GYVP+
Sbjct: 661 VRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPD 720

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V+ D++  EKE ++  HSEKLA+ FGL+      T+ + KNLRICGDCH A   +S+
Sbjct: 721 TKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSK 780

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              REI+VRD  RFH FK G CSC ++W
Sbjct: 781 AVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 199/429 (46%), Gaps = 50/429 (11%)

Query: 148 NALIHFYSIFGYINNAHKVFEG--SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS- 204
            +L+  ++  G + +A   F+      RD V +N +++ +A+     PA+ +F  +  S 
Sbjct: 98  TSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 157

Query: 205 CIQPDAFTFVAMFSACTELND---PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            ++PD ++F A+ SA  ++++   P    Q H  V K+     + + +  A+I +Y KC 
Sbjct: 158 SLRPDDYSFTALISAVGQMHNLAAPHC-TQLHCSVLKS--GAAAVLSVSNALIALYMKCD 214

Query: 262 LMNM---AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
                  A +V   M   K    W++M+ GY R G +  AR +F+++D +  V W AMIS
Sbjct: 215 TPEASWDARKVLDEMP-DKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS 273

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE---NV 375
           GY Q G  + A ELF +M S  +  DE T  +VL AC   G    GK +H Q I    N 
Sbjct: 274 GYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 333

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI--------------- 420
           V    + +  A++ +Y+K G I  A  +F  +  NLK V  +N+I               
Sbjct: 334 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTM--NLKDVVSWNTILSGYIDSGCLDKAVE 391

Query: 421 ----------------ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
                           +SG    GL E ++ +F +M    +KP   T+   + AC   G 
Sbjct: 392 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 451

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++ G+Q    ++  G +        ++ + A+ G +++A  +   MP + +SV W A+++
Sbjct: 452 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMIS 510

Query: 525 ACRLHRNAK 533
           A   H + +
Sbjct: 511 ALGQHGHGR 519



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 199/458 (43%), Gaps = 72/458 (15%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++D     +WN ++ GY +S    +A  L+  M+S+  V  + FTF  VL++CA
Sbjct: 253 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEK-VPLDEFTFTSVLSACA 311

Query: 121 RLSSFKSGCQIHCHIIK----FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
               F  G  +H  II+    F  E  L + NAL+  YS  G I  A ++F+    +D+V
Sbjct: 312 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVV 371

Query: 177 SYNTLINGY---------AQVKEPCP----------------------ALWLFRKMQDSC 205
           S+NT+++GY          +V +  P                      AL LF +M+   
Sbjct: 372 SWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED 431

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P  +T+    +AC EL   + G+Q HA + +  G   SN     A++ MYAKCG +N 
Sbjct: 432 VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNS-AGNALLTMYAKCGAVND 489

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  VF  M  +  + +W++MIS   + G    A +LFDQM                    
Sbjct: 490 ARLVFLVMP-NLDSVSWNAMISALGQHGHGREALELFDQMVAE----------------- 531

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
                         GI PD ++ + +L AC   G +D G    +    +           
Sbjct: 532 --------------GIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 577

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
            +ID+  + G I  A  +   +P    T S++ +I+SG   +G  E       ++  M  
Sbjct: 578 RLIDLLGRSGRIGEARDLIKTMPFE-PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 636

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           + DG T++ +    S  G   +  +  + M + G+K +
Sbjct: 637 QHDG-TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKE 673



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 12/307 (3%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + ++S +  SGC   L ++  +F  +   N   W  ++ GY      ++AL L+  M
Sbjct: 371 VSWNTILSGYIDSGC---LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 427

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
            ++  V P ++T+   + +C  L + K G Q+H H+++ G E      NAL+  Y+  G 
Sbjct: 428 RAED-VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 486

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +N+A  VF      D VS+N +I+   Q      AL LF +M    I PD  +F+ + +A
Sbjct: 487 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 546

Query: 220 CTELNDPRIGKQFHAVVYKNLG-CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           C        G  +   + ++ G   G +   +  +I++  + G +  A  +  TM    +
Sbjct: 547 CNHAGLVDEGFHYFESMKRDFGISPGEDHYAR--LIDLLGRSGRIGEARDLIKTMPFEPT 604

Query: 279 TAAWSSMISGYTREGKIE----RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
            + W +++SG    G +E     A QLF  + Q D  ++  + + YS  G +  A  +  
Sbjct: 605 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD-GTYILLSNTYSAAGRWVDAARVRK 663

Query: 335 KMESLGI 341
            M   G+
Sbjct: 664 LMRDRGV 670


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/637 (37%), Positives = 384/637 (60%), Gaps = 15/637 (2%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           LL  C S+ +  Q+H  +V  G++  ++S  L S+ AL     G++ +R LF +I +P+ 
Sbjct: 18  LLRRCGSVHRLNQLHAHLVVHGVDD-VTSQILASYCALPA-GGGVWYARQLFDRIPDPDR 75

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
           F++N+L+R Y  S  PQEAL L   M+ +GI+ PN FT PF+L +CAR+ +++     H 
Sbjct: 76  FVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL-PNEFTLPFLLKACARVQAWEHVMVTHG 134

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            ++K G    +F+ NAL+H Y+  G + ++ + F+  + R++VS+N++INGYAQ      
Sbjct: 135 VVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTRE 194

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A  LF  M+   +  D FT V++  AC+   +   GK  H+ +    GC   +++L  A+
Sbjct: 195 ACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCR-IDLILANAL 252

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           ++MY KCG + MA   F  M   K+  +W+SM+    +   I+ AR  F+Q+ ++ ++SW
Sbjct: 253 VDMYGKCGDLLMAHTCFDMMPF-KNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            AMIS Y Q G F +AL+L+ +M+ LG+ PDE T+ AVL AC  LG L  GK +H    +
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRD 371

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N      + L  +++DMYA+CG +DTA+S+F ++P   K V  +N+II  LA HG  + +
Sbjct: 372 NF-HNPGVALFNSLLDMYARCGQVDTAISLFSEMPS--KNVISWNAIIGALAMHGRAQDA 428

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVD 492
           +  FR M      PD +TFV +L AC+HGGL+E G+ +F++M + Y +KP +EHY CMVD
Sbjct: 429 LMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVD 488

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R G+L +A  LI+ MP   + V+W ALL ACR+H + +IG+   ++LL+LE   G  
Sbjct: 489 LLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGL 548

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           +VL+SNML ET++WE+ +++RKLM + G++K  G S IE N  +H   A    H  + ++
Sbjct: 549 FVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDM 608

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFD-VDEEEKETVV 648
            +    +   L      PN + V  D ++ EE+++++
Sbjct: 609 YVGDDRLPHHL----VFPNALAVPPDQLNVEERKSIL 641


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/609 (38%), Positives = 354/609 (58%), Gaps = 47/609 (7%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSLAR 173
           +  C R+   K+   I  H+++  L  D F+ + LI   ++   G++  AH++F  +   
Sbjct: 14  IKRCTRVGDLKA---IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHP 70

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +L  +NT+I GY+    P  A+ L+R M    I P+++TF  +  AC +L     G++ H
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130

Query: 234 AVVYKNLGCVGSNM--LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
           + + K    VG +    L   +I +YA CG M+ A                         
Sbjct: 131 SQIVK----VGLDFETPLVNGLIKLYAACGCMDYA------------------------- 161

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
                    +FD+M + D  SW+ M+SGY+Q G   +AL+LF +M++  +  D  T+ +V
Sbjct: 162 -------CVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASV 214

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           +  C  LGALD GK +H  Y++      ++ L TA++ MY+KCGS+D AL VF  + +  
Sbjct: 215 VGVCGDLGALDLGKWVHS-YMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAE-- 271

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           + V+ ++++I+G A HG GE ++ +F  M+     P+ VTF +VL ACSH GLVE+G Q 
Sbjct: 272 RDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQI 331

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           FE+M   Y I PQ++HYGCMVDL  R G +  A+  IQ+MP + N V+WR LL AC+ H 
Sbjct: 332 FETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
              +GE   +K+L L+P    +YVL+SN+ A   RW    QVR LM D   +K  GWS I
Sbjct: 392 YKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSI 451

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E N  +H+F+   +SHP+ ++I  ML  M  KLK  G+V +TV V+ D+DEEEKE  +  
Sbjct: 452 EINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGL 511

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSE+LA+A+GL+++ +   IRI KNLR+C DCH   KL+SE+Y REI+VRD +RFH F++
Sbjct: 512 HSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRE 571

Query: 711 GNCSCMDFW 719
             CSC D+W
Sbjct: 572 RGCSCNDYW 580



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 223/452 (49%), Gaps = 39/452 (8%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRI 63
           +L+  SL+A ++ C  +     I   +V + L      +S+LI   A++   +  +  RI
Sbjct: 4   MLDQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRI 63

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            FS   +PN+F+WNT++RGYS SDSP  A+ LY  M   GI SPN++TF FVL +C +L 
Sbjct: 64  -FSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGI-SPNSYTFGFVLKACCKLL 121

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G ++H  I+K GL+F+  + N LI  Y+  G ++ A  +F+     D  S++T+++
Sbjct: 122 RLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVS 181

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ  +   AL LFR+MQ   +  DAFT  ++   C +L    +GK  H+  Y +   V
Sbjct: 182 GYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHS--YMDKEGV 239

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +++L TA++ MY+KCG ++ A +VF  M   +   AWS+MI+GY   G  E+A QLFD
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIHGHGEKALQLFD 298

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M +   +                               P+ VT  +VL AC   G ++ 
Sbjct: 299 AMKRSKTI-------------------------------PNCVTFTSVLSACSHSGLVEK 327

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G ++ +           I     ++D++ + G +  A      +P     V L+ +++  
Sbjct: 328 GHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE-PNVVLWRTLLGA 386

Query: 424 LAQHGLGETSIAVFRE-MELMGLKPDGVTFVT 454
              HG  +    + R+ ++L    P+    V+
Sbjct: 387 CKTHGYKDLGEHISRKILKLDPSSPENYVLVS 418


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/737 (36%), Positives = 395/737 (53%), Gaps = 87/737 (11%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F +I  P+   +N L+R YS       A+ LY SML    V PN +TFPFVL +C+
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFR-VPPNKYTFPFVLKACS 110

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L+   +G  IH H    GL  DLF+  ALI  Y        A  VF     RD+V++N 
Sbjct: 111 ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNA 170

Query: 181 LINGYAQVKEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++ GYA       A+     MQD   ++P+A T V++     +      G   HA   + 
Sbjct: 171 MLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRA 230

Query: 240 -LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
            L      +L+ TA+++MYAKC  +  A RVF  M + ++   WS++I G+    ++  A
Sbjct: 231 YLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTV-RNEVTWSALIGGFVLCDRMTEA 289

Query: 299 RQLFDQM------------------------DQR----------------DLVSWTAMIS 318
             LF  M                        D R                DL +  +++S
Sbjct: 290 FNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLS 349

Query: 319 GYSQVG-------------------------GFSQ------ALELFGKMESLGIHPDEVT 347
            Y++ G                         G+ Q      A  +F KM++  + PD  T
Sbjct: 350 MYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIAT 409

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV----IDMYAKCGSIDTALSV 403
           MV+++ AC  L AL  G+  H   I      R + L T++    IDMYAKCG ID +  V
Sbjct: 410 MVSLIPACSHLAALQHGRCSHGSVII-----RGLALETSICNSLIDMYAKCGRIDLSRQV 464

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F K+P   + +  +N++I+G   HGLG+ +  +F  M+  G +PD VTF+ ++ ACSH G
Sbjct: 465 FDKMPA--RDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSG 522

Query: 464 LVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           LV EGK +F++M + YGI P+MEHY CMVDLLAR G LDEAY  IQSMP  A+  +W AL
Sbjct: 523 LVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGAL 582

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L ACR+H+N  +G+   + +  L P+   ++VLLSN+ +   R++EA +VR +    G +
Sbjct: 583 LGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFK 642

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PG S+IE NG+LH F+   +SHP + +I   L ++ + +K  GY  +T  V+ D++EE
Sbjct: 643 KSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEE 702

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           EKE  + YHSEKLA+AFG+++    +TI +TKNLR+CGDCH A K ++ +  R I+VRDA
Sbjct: 703 EKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDA 762

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G CSC DFW
Sbjct: 763 NRFHHFKNGQCSCGDFW 779



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 161/334 (48%), Gaps = 12/334 (3%)

Query: 6   LEHSSLLALLESCKSL---KQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRS 61
           L  +S+ + L  C SL   +   Q+H  +  SG++  +++ + L+S +A +G  N    +
Sbjct: 304 LSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLIN---EA 360

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            +LF +I   +   +  L+ GY ++   +EA +++  M +   V P+  T   ++ +C+ 
Sbjct: 361 TMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACN-VQPDIATMVSLIPACSH 419

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L++ + G   H  +I  GL  +  I N+LI  Y+  G I+ + +VF+   ARD+VS+NT+
Sbjct: 420 LAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTM 479

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I GY        A  LF  M++   +PD  TF+ + +AC+       GK +   +    G
Sbjct: 480 IAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 539

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ- 300
            +   M     ++++ A+ G ++ A +   +M +      W +++        I+  +Q 
Sbjct: 540 IL-PRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 598

Query: 301 --LFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
             +  ++      ++  + + +S  G F +A E+
Sbjct: 599 SRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEV 632



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 8/253 (3%)

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K    W   +  +   G++  ARQ+FD++   D  ++ A+I  YS  G F  A++L+  M
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM 90

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
               + P++ T   VL+AC  L  L  G+ +H  +   V    ++F++TA+ID+Y +C  
Sbjct: 91  LYFRVPPNKYTFPFVLKACSALADLCAGRTIH-AHAAAVGLHTDLFVSTALIDLYIRCAR 149

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTV 455
              A +VF K+P  ++ V  +N++++G A HG+   +IA   +M +  GL+P+  T V++
Sbjct: 150 FGPAANVFAKMP--MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSL 207

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHY---GCMVDLLARDGRLDEAYGLIQSMPY 512
           L   +  G + +G       L   +    E       ++D+ A+   L  A  +   M  
Sbjct: 208 LPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTV 267

Query: 513 DANSVIWRALLAA 525
             N V W AL+  
Sbjct: 268 R-NEVTWSALIGG 279



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 163/375 (43%), Gaps = 47/375 (12%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G +  A +VF+   A D  +YN LI  Y+       A+ L+R M    + P+ +TF  + 
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
            AC+ L D   G+  HA    +   VG  +++ + TA+I++Y +C     A  VF+ M M
Sbjct: 107 KACSALADLCAGRTIHA----HAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPM 162

Query: 276 SKSTAAWSSMISGYTREGKIERA-RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
            +   AW++M++GY   G    A   L D  D+                           
Sbjct: 163 -RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRG-------------------------- 195

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN---IFLTTAVIDMY 391
                G+ P+  T+V++L      GAL  G  +H  Y       +N   + + TA++DMY
Sbjct: 196 -----GLRPNASTLVSLLPLLAQHGALFQGTSVH-AYCLRAYLDQNEEQVLIGTALLDMY 249

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKC  +  A  VF+ +   ++    ++++I G         +  +F++M + G+     T
Sbjct: 250 AKCKHLVYACRVFHGM--TVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSAT 307

Query: 452 FV-TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            V + L  C+    +  G Q    +   GI   +     ++ + A+ G ++EA  L   +
Sbjct: 308 SVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEI 367

Query: 511 PYDANSVIWRALLAA 525
               +++ + ALL+ 
Sbjct: 368 AIK-DTISYGALLSG 381


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/688 (35%), Positives = 387/688 (56%), Gaps = 70/688 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   N   + TL++GY+ S    EA+ L+  +  +G    N F F  +L       
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGH-ELNPFVFTTILKLLVSTD 153

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             + G  IH  I K G E + F+  ALI  YS+ G ++ A +VF+G L +D+VS+  ++ 
Sbjct: 154 CGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVT 213

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            +A+      AL LF +M+    +P+ FTF ++F AC  L    +GK  H       GC 
Sbjct: 214 CFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVH-------GCA 266

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
               L     +++Y    L+++                       YT+ G I+ AR+ F+
Sbjct: 267 ----LKSRYELDLYVGVALLDL-----------------------YTKSGDIDDARRAFE 299

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           ++ ++D++ W+ MI+ Y+Q     +A+E+F +M    + P++ T  +VL+AC  +  L+ 
Sbjct: 300 EIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNL 359

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G ++H   I+ +    ++F++ A++D+YAKCG ++ ++ +F + P   +    +N++I G
Sbjct: 360 GNQIHCHVIK-IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPH--RNDVTWNTVIVG 416

Query: 424 LAQHGLGETSIAVFREM-------------------------------ELMGLKPDGVTF 452
             Q G GE ++ +F  M                                 + +KPD +TF
Sbjct: 417 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTF 476

Query: 453 VTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           V VL AC++ GL+++G+ +F SM+ ++GI+P +EHY CMV LL R G LD+A  LI  +P
Sbjct: 477 VGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 536

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
           +  + ++WRALL AC +H + ++G I+ Q++L++EP   A +VLLSNM A   RW+    
Sbjct: 537 FQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVAS 596

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRK M   G++K PG S+IE  GT+H F     SHP+ + I  ML+ + MK K AGY+PN
Sbjct: 597 VRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPN 656

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
              V+ DV++EEKE ++  HSE+LAL+FG+I + S   IRI KNLRIC DCH A K +S+
Sbjct: 657 YNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISK 716

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + +REI+VRD  RFH F++G CSC D+W
Sbjct: 717 VVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 142/322 (44%), Gaps = 41/322 (12%)

Query: 206 IQPDAFTFVAMFSA---CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           + P  F   A  +A   C + ++P  GK  H  + K  GC           ++++A    
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGC-----------LDLFA---- 75

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                              W+ +++ Y +   +  A +LFD+M +R+ +S+  +I GY++
Sbjct: 76  -------------------WNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
              F +A+ELF ++   G   +      +L+  V     + G  +H   I  +    N F
Sbjct: 117 SVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIH-ACIFKLGHESNAF 175

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           + TA+ID Y+ CG +D A  VF  I    K +  +  +++  A++   + ++ +F +M +
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGIL--YKDMVSWTGMVTCFAENDCFKEALKLFSQMRM 233

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           +G KP+  TF +V  AC      + GK      L    +  +     ++DL  + G +D+
Sbjct: 234 VGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDD 293

Query: 503 AYGLIQSMPYDANSVIWRALLA 524
           A    + +P   + + W  ++A
Sbjct: 294 ARRAFEEIP-KKDVIPWSFMIA 314


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/532 (42%), Positives = 323/532 (60%), Gaps = 41/532 (7%)

Query: 192 CPA-LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           CP  L  +  M  + + P   +F  +  +C    + ++G+ FH  + K +G    +M+L+
Sbjct: 11  CPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMK-MG-FEYDMILQ 68

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           T +++ YAK                                 G +E AR LFD M +R+ 
Sbjct: 69  TGLLDFYAK--------------------------------HGYVEEARNLFDNMTERNS 96

Query: 311 --VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
             V+W  MIS Y Q G F  A+ +F +M+S  + P EVTMV++L AC  LGALD G+ +H
Sbjct: 97  NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 156

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             YI       ++ L  A+IDMY KCG+++ A+ VF+ + +  K +  +NSII GL  +G
Sbjct: 157 G-YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSR--KNIFCWNSIIVGLGMNG 213

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
            GE +IA F  ME  G+KPDGVTFV +L  CSH GL+  G+++F  ML  YG++P +EHY
Sbjct: 214 RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHY 273

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDLL R G L EA  LI++MP   NS++  +LL AC++H++ K+GE   Q+LL+L+P
Sbjct: 274 GCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDP 333

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
             G +YV LSN+ A   RW++    RKLM   G+ K PG S IE N  +H F+A   SHP
Sbjct: 334 CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHP 393

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q  +I   L ++  +LK  G+VPNT  V+ D++EEEKE  + YHSE++A+AFGL+++   
Sbjct: 394 QFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPG 453

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +TIR+ KNLR C DCH A KL+S  ++REI+VRD  RFH F+ G+CSC D+W
Sbjct: 454 KTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 164/364 (45%), Gaps = 41/364 (11%)

Query: 93  LVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
           L  Y+ ML   ++ P+  +F  +L SCA     + G   HC I+K G E+D+ ++  L+ 
Sbjct: 15  LGFYSGMLRNDVL-PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLD 73

Query: 153 FYSIFGYINNAHKVFEGSLAR--DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           FY+  GY+  A  +F+    R  + V++NT+I+ Y Q  E   A+ +F++MQ   ++P  
Sbjct: 74  FYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTE 133

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V++ SAC  L    +G+  H  +      +  +++L  A+I+MY KCG +  A  VF
Sbjct: 134 VTMVSLLSACAHLGALDMGEWIHGYIRTKR--LKIDVVLGNALIDMYCKCGALEAAIDVF 191

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             +   K+   W+S+I G    G+ E                               +A+
Sbjct: 192 HGLS-RKNIFCWNSIIVGLGMNGRGE-------------------------------EAI 219

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
             F  ME  GI PD VT V +L  C   G L  G+R   + +        +     ++D+
Sbjct: 220 AAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDL 279

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DG 449
             + G +  AL +   +P    ++ L  S++     H   +T +      +L+ L P DG
Sbjct: 280 LGRAGYLKEALELIRAMPMKPNSMVL-GSLLRACQIH--KDTKLGEQVTQQLLELDPCDG 336

Query: 450 VTFV 453
             +V
Sbjct: 337 GNYV 340



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 19/310 (6%)

Query: 9   SSLLALLESCKSLKQAL---QIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRIL 64
           +S   +L SC    +A      H QI+  G  +  I  + L+ F+A  G    +  +R L
Sbjct: 31  TSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGY---VEEARNL 87

Query: 65  FSQID--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           F  +   N N   WNT++  Y +      A+ ++  M S+  V P   T   +L++CA L
Sbjct: 88  FDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN-VKPTEVTMVSLLSACAHL 146

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            +   G  IH +I    L+ D+ + NALI  Y   G +  A  VF G   +++  +N++I
Sbjct: 147 GALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSII 206

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            G         A+  F  M+   I+PD  TFV + S C+       G+++ +   + LG 
Sbjct: 207 VGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFS---EMLGV 263

Query: 243 VGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            G    ++    ++++  + G +  A  +   M M  ++    S++    R  +I +  +
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLL----RACQIHKDTK 319

Query: 301 LFDQMDQRDL 310
           L +Q+ Q+ L
Sbjct: 320 LGEQVTQQLL 329



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 113/289 (39%), Gaps = 45/289 (15%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI-L 64
           ++++LL +C    +L     IHG I    L   +   + LI  +    CK G   + I +
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMY----CKCGALEAAIDV 190

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +   NIF WN+++ G   +   +EA+  +  M  +GI  P+  TF  +L+ C+    
Sbjct: 191 FHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI-KPDGVTFVGILSGCSHSGL 249

Query: 125 FKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +G +    ++  +GLE  +     ++      GY+  A                    
Sbjct: 250 LSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEA-------------------- 289

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
                      L L R M    ++P++    ++  AC    D ++G+Q    + +   C 
Sbjct: 290 -----------LELIRAMP---MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 335

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           G N +  + +    ++   +N   ++    G+ K+    S  ++    E
Sbjct: 336 GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHE 384


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/718 (36%), Positives = 402/718 (55%), Gaps = 57/718 (7%)

Query: 14  LLESCKSLKQALQIHGQIVHS-----GLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           LL++C SL QALQ+ G+++H+     GL+  +  S+ L+  +A  G    L++++ LF+ 
Sbjct: 113 LLKACSSL-QALQL-GRLIHTHAHILGLSMDLYVSTALLHMYAKCG---HLYQAQTLFNS 167

Query: 68  I--DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           I   + +I  WN ++  +S      + +     M   G V+PN+ T   +L +  + ++ 
Sbjct: 168 ISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAG-VTPNSSTLVSILPTIGQANAL 226

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  IH + I+     ++ ++ AL+  Y+    +  A K+F     ++ V ++ +I GY
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 186 AQVKEPCPALWLFRKMQDSCI---QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
                   AL L+  M   CI    P   T   M  AC +L D + GK+ H  + K+   
Sbjct: 287 VLHDSISDALALYDDML--CIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS--- 341

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
                                          GM   T   +S+IS Y + G ++ A    
Sbjct: 342 -------------------------------GMDLDTTVGNSLISMYAKCGIMDNAVGFL 370

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+M  +D VS++A+ISG  Q G   +AL +F +M+S GI P   TM+A+L AC  L AL 
Sbjct: 371 DEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQ 430

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G   H  Y     F  +  +  A+IDMY+KCG I  +  +F ++ +N   +S +N++I 
Sbjct: 431 HGTCCHG-YTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRM-QNRDIIS-WNTMII 487

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
           G   HGL   ++++F+E++ +GLKPD VT + VL ACSH GLV EGK +F SM  N+ IK
Sbjct: 488 GYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIK 547

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+M HY CMVDLLAR G LDEAY  IQ MP+  N  IW ALLAACR H+N ++GE   +K
Sbjct: 548 PRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKK 607

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           +  L P+   ++VL+SN+ +   RW++A  +R +    G +K PG S++E +G +H F+ 
Sbjct: 608 IQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIG 667

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             +SHPQ+  I   L+++ +++K  GY  ++  V+ DV+EEEKE ++ YHSEK+A+AFG+
Sbjct: 668 GHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGI 727

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +N+     I +TKNLRIC DCH A K ++ +  REI VRDA RFH FK G C+C DFW
Sbjct: 728 LNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 241/480 (50%), Gaps = 46/480 (9%)

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
           +N +  +R +F QI  P++ +WN ++R Y+ S   Q+++ LY  ML  G V+P NFTFPF
Sbjct: 54  RNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG-VTPTNFTFPF 112

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLA 172
           +L +C+ L + + G  IH H    GL  DL++  AL+H Y+  G++  A  +F       
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQD 172

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD+V++N +I  ++        +    +MQ + + P++ T V++     + N    GK  
Sbjct: 173 RDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAI 232

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA   +N      N++L+TA+++MYAKC L+  A ++F+T+   K+   WS+MI GY   
Sbjct: 233 HAYYIRNF--FFDNVVLQTALLDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIGGYVLH 289

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
             I  A  L+D M                              +   G++P   T+  +L
Sbjct: 290 DSISDALALYDDM------------------------------LCIYGLNPTPATLATML 319

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTT--AVIDMYAKCGSIDTALSVFYK-IPK 409
           RAC  L  L  GK+LH   I++   G ++  T   ++I MYAKCG +D A+    + I K
Sbjct: 320 RACAQLTDLKRGKKLHCHMIKS---GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAK 376

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
           +  TVS +++IISG  Q+G  E ++ +FR+M+  G+ P   T + +L ACSH   ++ G 
Sbjct: 377 D--TVS-YSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGT 433

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
                 +  G          ++D+ ++ G++  +  +   M  + + + W  ++    +H
Sbjct: 434 CCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQ-NRDIISWNTMIIGYGIH 492



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 124/255 (48%), Gaps = 2/255 (0%)

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
           +S S AA + +   +    +I+ AR +FDQ+ +  +V W  MI  Y+  G F Q++ L+ 
Sbjct: 37  VSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYL 96

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
            M  LG+ P   T   +L+AC  L AL  G+ +H  +   +    +++++TA++ MYAKC
Sbjct: 97  HMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIH-THAHILGLSMDLYVSTALLHMYAKC 155

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G +  A ++F  I    + +  +N++I+  + H L   +I    +M+  G+ P+  T V+
Sbjct: 156 GHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVS 215

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           +L        + +GK      +       +     ++D+ A+   L  A  +  ++    
Sbjct: 216 ILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVN-KK 274

Query: 515 NSVIWRALLAACRLH 529
           N V W A++    LH
Sbjct: 275 NDVCWSAMIGGYVLH 289


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/670 (36%), Positives = 379/670 (56%), Gaps = 38/670 (5%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV-- 115
           L  +R+LF  +   ++  WN ++ GY RS    EA  ++  M  K  +S N     +V  
Sbjct: 111 LRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRS 170

Query: 116 --LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
             L    RL   KS             +++L   N L+  Y     + +A ++F+    R
Sbjct: 171 GRLEEARRLFESKS-------------DWELISCNCLMGGYVKRNMLGDARQLFDQIPVR 217

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGK 230
           DL+S+NT+I+GYAQ  +   A  LF   ++S ++ D FT+ AM  A  +   L++ R  +
Sbjct: 218 DLISWNTMISGYAQDGDLSQARRLF---EESPVR-DVFTWTAMVYAYVQDGMLDEAR--R 271

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
            F  +  K         +    +I  YA+   M+M   +F  M    +  +W+ MISGY 
Sbjct: 272 VFDEMPQKR-------EMSYNVMIAGYAQYKRMDMGRELFEEMPFP-NIGSWNIMISGYC 323

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           + G + +AR LFD M QRD VSW A+I+GY+Q G + +A+ +  +M+  G   +  T   
Sbjct: 324 QNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC 383

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            L AC  + AL+ GK++H Q +    + +   +  A++ MY KCG ID A  VF  +   
Sbjct: 384 ALSACADIAALELGKQVHGQVVR-TGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH- 441

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K +  +N++++G A+HG G  ++ VF  M   G+KPD +T V VL ACSH GL + G +
Sbjct: 442 -KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTE 500

Query: 471 FFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F SM  +YGI P  +HY CM+DLL R G L+EA  LI++MP++ ++  W ALL A R+H
Sbjct: 501 YFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIH 560

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            N ++GE A + +  +EP +   YVLLSN+ A + RW +  ++R  M   G+QK PG+S+
Sbjct: 561 GNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSW 620

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           +E    +H F      HP+   I   L+++ +K+K  GYV +T  V+ DV+EEEK+ ++ 
Sbjct: 621 VEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLK 680

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           YHSEKLA+AFG++   S + IR+ KNLR+C DCH A K +S+I  R I+VRD+ R+H F 
Sbjct: 681 YHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFS 740

Query: 710 KGNCSCMDFW 719
           +G CSC D+W
Sbjct: 741 EGICSCRDYW 750



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 193/432 (44%), Gaps = 81/432 (18%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G+ + A  VF+    R+ VSYN +I+GY +  +   A  LF KM       D F++  M 
Sbjct: 47  GHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP----HKDLFSWNLML 102

Query: 218 SACT---ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           +       L D R+   F ++  K++       +   A+++ Y + G ++ A  VF  M 
Sbjct: 103 TGYARNRRLRDARM--LFDSMPEKDV-------VSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 275 MSKSTAAWSSMISGYTREGKIER-------------------------------ARQLFD 303
             K++ +W+ +++ Y R G++E                                ARQLFD
Sbjct: 154 -HKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFD 212

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           Q+  RDL+SW  MISGY+Q G  SQA  LF   E   +  D  T  A++ A V  G LD 
Sbjct: 213 QIPVRDLISWNTMISGYAQDGDLSQARRLF---EESPVR-DVFTWTAMVYAYVQDGMLDE 268

Query: 364 GKRLHQQYIE------NVV-----------FGRNIFLTTA---------VIDMYAKCGSI 397
            +R+  +  +      NV+            GR +F             +I  Y + G +
Sbjct: 269 ARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDL 328

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A ++F  +P+   +VS + +II+G AQ+GL E ++ +  EM+  G   +  TF   L 
Sbjct: 329 AQARNLFDMMPQR-DSVS-WAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALS 386

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           AC+    +E GKQ    ++  G +        +V +  + G +DEAY + Q + +  + V
Sbjct: 387 ACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH-KDIV 445

Query: 518 IWRALLAACRLH 529
            W  +LA    H
Sbjct: 446 SWNTMLAGYARH 457



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 149/314 (47%), Gaps = 36/314 (11%)

Query: 242 CVGSNMLLKTAV-----INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
           CV   M L+ +V     I+ Y +    ++A  +F  M   K   +W+ M++GY R  ++ 
Sbjct: 54  CVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP-HKDLFSWNLMLTGYARNRRLR 112

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            AR LFD M ++D+VSW AM+SGY + G   +A ++F +M     H + ++   +L A V
Sbjct: 113 DARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISWNGLLAAYV 168

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             G L+  +RL +   +  +   N  +       Y K   +  A  +F +IP  ++ +  
Sbjct: 169 RSGRLEEARRLFESKSDWELISCNCLMGG-----YVKRNMLGDARQLFDQIP--VRDLIS 221

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N++ISG AQ G    +  +F E  +     D  T+  ++ A    G+++E ++ F+ M 
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVR----DVFTWTAMVYAYVQDGMLDEARRVFDEM- 276

Query: 477 NYGIKPQMEH--YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
                PQ     Y  M+   A+  R+D    L + MP+  N   W  +++        + 
Sbjct: 277 -----PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISG-----YCQN 325

Query: 535 GEIA-GQKLLDLEP 547
           G++A  + L D+ P
Sbjct: 326 GDLAQARNLFDMMP 339



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 30/252 (11%)

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
           T   +  IS + R G  + A  +FD M  R+ VS+ AMISGY +   FS A +LF KM  
Sbjct: 33  TVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP- 91

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
              H D  +   +L        L   + L     E  V   N  L+      Y + G +D
Sbjct: 92  ---HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSG-----YVRSGHVD 143

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF ++P   K    +N +++   + G  E +  +F        K D   +  + C 
Sbjct: 144 EARDVFDRMPH--KNSISWNGLLAAYVRSGRLEEARRLFES------KSD---WELISCN 192

Query: 459 CSHGGLVE-----EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           C  GG V+     + +Q F+ +        +  +  M+   A+DG L +A  L +  P  
Sbjct: 193 CLMGGYVKRNMLGDARQLFDQI----PVRDLISWNTMISGYAQDGDLSQARRLFEESPV- 247

Query: 514 ANSVIWRALLAA 525
            +   W A++ A
Sbjct: 248 RDVFTWTAMVYA 259



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 8/119 (6%)

Query: 6   LEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRS 61
           L  S+    L +C    +L+   Q+HGQ+V +G     +  + L+  +   GC +  +  
Sbjct: 376 LNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYD- 434

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
             +F  + + +I  WNT++ GY+R    ++AL ++ SM++ G V P+  T   VL++C+
Sbjct: 435 --VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAG-VKPDEITMVGVLSACS 490


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/720 (34%), Positives = 407/720 (56%), Gaps = 46/720 (6%)

Query: 3   RLVL-EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFR 60
           RLV+ +++ LL L      LK+  +IHG I+ +G   ++   + ++S +A   C+  +  
Sbjct: 142 RLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYA--KCRQ-IDN 198

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +  +F ++ + ++  W TL+ GY+++   + AL L   M   G   P++ T   +L + A
Sbjct: 199 AYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAG-QKPDSVTLVSILPAVA 257

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + + + G  IH +  + G E  + + NAL+  Y   G    A  VF+G  ++ +VS+NT
Sbjct: 258 DMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNT 317

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+G AQ  E   A   F KM D    P   T + +  AC  L D   G   H ++ K  
Sbjct: 318 MIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLK 377

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + SN+ +  ++I+MY+KC  +++A  +F+   + K+   W++MI GY + G ++    
Sbjct: 378 --LDSNVSVMNSLISMYSKCKRVDIAASIFNN--LEKTNVTWNAMILGYAQNGCVK---- 429

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                      +AL LF  M+S GI  D  T+V V+ A      
Sbjct: 430 ---------------------------EALNLFCMMQSQGIKLDCFTLVGVITALADFSV 462

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
               K +H   +       N+F++TA++DMYAKCG+I TA  +F  + +  + V  +N++
Sbjct: 463 NRQAKWIHGLAVR-ACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQE--RHVITWNAM 519

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYG 479
           I G   HG+G+ ++ +F EM+   +KP+ +TF++V+ ACSH G VEEG   F+SM  +Y 
Sbjct: 520 IDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYY 579

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           ++P M+HY  MVDLL R G+LD+A+  IQ MP      +  A+L AC++H+N ++GE A 
Sbjct: 580 LEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAA 639

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           QKL  L+PD G ++VLL+N+ A    W++  +VR  M+D G+ K PG S++E    +H F
Sbjct: 640 QKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTF 699

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            +   +HP++K+I   L+ +  ++K+AGYVP+    + DV+E+ K+ ++S HSE+LA+AF
Sbjct: 700 YSGSTNHPESKKIYAFLETLGDEIKAAGYVPDP-DSIHDVEEDVKKQLLSSHSERLAIAF 758

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           GL+N+    T+ I KNLR+CGDCH   K +S +  REI+VRD  RFH FK G+CSC D+W
Sbjct: 759 GLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 259/539 (48%), Gaps = 52/539 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           H S++ LLE+C S K+  QI   I+ +G  N H+  +++IS F   G  +   R   +F 
Sbjct: 48  HPSVV-LLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAAR---VFE 103

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            ++     +++ +++GY+++ S  +AL  +  M+   +       +  +L  C      K
Sbjct: 104 HVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVG-DYACLLQLCGENLDLK 162

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +IH  II  G E +LF+  A++  Y+    I+NA+K+FE    +DLVS+ TL+ GYA
Sbjct: 163 KGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYA 222

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      AL L  +MQ++  +PD+ T V++  A  ++   RIG+  H   +++     S 
Sbjct: 223 QNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRS--GFESL 280

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  A+++MY KCG   +A  VF  M  SK+  +W++MI G  + G+ E          
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGM-RSKTVVSWNTMIDGCAQNGESE---------- 329

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                +A   F KM   G  P  VTM+ VL AC  LG L+ G  
Sbjct: 330 ---------------------EAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWF 368

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H + ++ +    N+ +  ++I MY+KC  +D A S+F  +    KT   +N++I G AQ
Sbjct: 369 VH-KLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLE---KTNVTWNAMILGYAQ 424

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +G  + ++ +F  M+  G+K D  T V V+ A +   +  + K      +   +   +  
Sbjct: 425 NGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFV 484

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
              +VD+ A+ G +  A  L   M  + + + W A++     H         G++ LDL
Sbjct: 485 STALVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAMIDGYGTHG-------VGKETLDL 535


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/703 (36%), Positives = 392/703 (55%), Gaps = 39/703 (5%)

Query: 41  SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
           S+S   +  A       L ++   F  I  P+ F +NTL+     S S  +   L+  M 
Sbjct: 137 STSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMP 196

Query: 101 SKGIVSPNNFTFPFV---LNSCAR-----------------LSSFKSGCQIH--CHIIKF 138
            K  VS N          L S AR                 L+++    +I     +   
Sbjct: 197 VKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDS 256

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
             E+D    NAL+  Y     I  A K+F     RD+VS+NT+++GYA+  +   A  LF
Sbjct: 257 RTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF 316

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYKNLGCVGSNMLLKTAVINMY 257
               D     D FT+ A+ S   +       K+ F A+  KN   V  N     A++  Y
Sbjct: 317 ----DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN--AVSWN-----AMMAAY 365

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            +  +M  A+ +F  M   ++ A+W++M++GY + G ++ AR +F  M Q+D VSW AM+
Sbjct: 366 VQRRMMEEAKELFDAMP-CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAML 424

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           + YSQ+G   + L+LF +M   G   +      VL  C  + AL+ G +LH + I+   +
Sbjct: 425 AAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIK-AGY 483

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
           G   F+  A++ MY KCGS++ A S F ++ +  + V  +N++I+G A+HG G+ ++ VF
Sbjct: 484 GVGCFVGNALLAMYFKCGSMEEAHSAFEEMEE--RDVVSWNTMIAGYARHGFGKEALEVF 541

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
             M     KPD +T V VL ACSH GLVE+G  +F SM  ++G+  + EHY CM+DLL R
Sbjct: 542 DTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGR 601

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            GRLDEA  L++ MP++ +S +W ALL A R+HRN+++G  A +K+ +LEP++   YVLL
Sbjct: 602 AGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLL 661

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A + +W +  ++R +M + G++K PG+S+IE    +H F      HP+ ++I   L
Sbjct: 662 SNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFL 721

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
           +D+ +++K AGYV  T  V+ DV+EEEKE ++ YHSEKLA+A+G++       IR+ KNL
Sbjct: 722 EDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNL 781

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+C DCH AFK +S I  R I++RD+ RFH F+ G+CSC D+W
Sbjct: 782 RVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 183/414 (44%), Gaps = 63/414 (15%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L + AR  S +         I    + ++  RN  I  +   G + +A ++F     R  
Sbjct: 79  LRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRST 138

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA---CTELNDPRIGKQF 232
            +YNT++ GYA       AL  FR    S  +PD+F++  +  A    + L D R    F
Sbjct: 139 STYNTMLAGYAANGRLPQALSFFR----SIPRPDSFSYNTLLHALGVSSSLADVRA--LF 192

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
             +  K+   V  N++     I+ +A  GL+++A   F  +   K   +W+ M++ Y R 
Sbjct: 193 DEMPVKD--SVSYNVM-----ISSHANHGLVSLARHYFD-LAPEKDAVSWNGMLAAYVRN 244

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G+I+ AR+LFD   + D +SW A+++GY Q     +A ++F KM       D V+   ++
Sbjct: 245 GRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR----DVVSWNTMV 300

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL 411
                 G +   +RL      +V   R++F  TA++  YA+ G ++ A  VF  +P KN 
Sbjct: 301 SGYARRGDMAEARRLF-----DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA 355

Query: 412 ----------------------------KTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
                                       + V+ +N++++G AQ G+ + + A+F      
Sbjct: 356 VSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIF------ 409

Query: 444 GLKP--DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           G+ P  D V++  +L A S  G  EE  Q F+ M   G       + C++   A
Sbjct: 410 GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCA 463



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 77/338 (22%)

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA-------- 298
           ++ +   I  + + G +  AER+F+ M   +ST+ +++M++GY   G++ +A        
Sbjct: 107 VIRRNRAITAHMRAGRVPDAERLFAAMP-RRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 299 -----------------------RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
                                  R LFD+M  +D VS+  MIS ++  G  S A   F  
Sbjct: 166 RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYF-- 223

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE---------------------- 373
              L    D V+   +L A V  G +   + L     E                      
Sbjct: 224 --DLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEA 281

Query: 374 ----NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
               N +  R++     ++  YA+ G +  A  +F   P  ++ V  + +I+SG AQ+G+
Sbjct: 282 QKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAP--IRDVFTWTAIVSGYAQNGM 339

Query: 430 GETSIAVFREMELMGLKPD--GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
            E +  VF  M      PD   V++  ++ A     ++EE K+ F++M    +      +
Sbjct: 340 LEEAKRVFDAM------PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA----SW 389

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             M+   A+ G LDEA  +   MP   ++V W A+LAA
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMP-QKDAVSWAAMLAA 426


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/660 (35%), Positives = 373/660 (56%), Gaps = 40/660 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++ + ++  WN+++ GY  +   ++ L L+  ML  GI + +  T   V+  C+
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGI-NTDLATMVSVVAGCS 262

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                  G  +H + IK     +L + N L+  YS  G +N+A +VFE    R +VS+ +
Sbjct: 263 NTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 322

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GYA+      ++ LF +M+   I PD FT   +  AC        GK  H  + +N 
Sbjct: 323 MIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENK 382

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + S++ +  A+++MYAKCG M  A  VFS                             
Sbjct: 383 --MQSDLFVSNALMDMYAKCGSMGDAHSVFS----------------------------- 411

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
              +M  +D+VSW  MI GYS+    ++AL LF +M+     P+ +TM  +L AC  L A
Sbjct: 412 ---EMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMACILPACASLAA 467

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L+ G+ +H   + N  F  +  +  A++DMY KCG++  A  +F  IP+  K +  +  +
Sbjct: 468 LERGQEIHGHILRNG-FSLDRHVANALVDMYLKCGALGLARLLFDMIPE--KDLVSWTVM 524

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG- 479
           I+G   HG G  +IA F EM   G++PD V+F+++L ACSH GL++EG  FF  M N   
Sbjct: 525 IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCC 584

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I+P+ EHY C+VDLLAR G L +AY  I+ MP + ++ IW ALL  CR++ + K+ E   
Sbjct: 585 IEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVA 644

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           + + +LEP++  +YVLL+N+ AE  +WEE +++R+ +   G++K PG S+IE  G +H F
Sbjct: 645 EHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 704

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
           +    SHP   +IEL+LK    ++K  G+ P     +   D+ EKE  +  HSEK+A+AF
Sbjct: 705 VTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAF 764

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           G+++    +T+R+TKNLR+CGDCH   K +S++ +R+I++RD+ RFH FK G+CSC   W
Sbjct: 765 GILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/774 (33%), Positives = 414/774 (53%), Gaps = 98/774 (12%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H +L  +L++C    S +     HG I  +G   ++   + L++ ++  G    L  + 
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG---SLEEAS 217

Query: 63  ILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-----FTFPF 114
           ++F +I      ++  WN+++  + +S +   AL L++ M       P N      +   
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L +C  L +     ++H + I+ G   D+F+ NALI  Y+  G + NA KVF     +D
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337

Query: 175 LVSYNTLINGYAQV--------------KEPCP---------------------ALWLFR 199
           +VS+N ++ GY+Q               KE  P                     AL LFR
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--------LGCVGSNMLLKT 251
           +M  S   P+  T +++ SAC  L     G + HA   KN         G    ++++  
Sbjct: 398 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 457

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--MDQRD 309
           A+I+MY+KC       R F                         + AR +FD   +++R+
Sbjct: 458 ALIDMYSKC-------RSF-------------------------KAARSIFDDIPLEERN 485

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +V+WT MI G++Q G  + AL+LF +M  E  G+ P+  T+  +L AC  L A+  GK++
Sbjct: 486 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 545

Query: 368 HQQYIENVVFGRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           H   + +  +  +  F+   +IDMY+KCG +DTA  VF  + +  K+   + S+++G   
Sbjct: 546 HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ--KSAISWTSMMTGYGM 603

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQME 485
           HG G  ++ +F +M   G  PD +TF+ VL ACSH G+V++G  +F+SM  +YG+ P+ E
Sbjct: 604 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 663

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C +DLLAR GRLD+A+  ++ MP +  +V+W ALL+ACR+H N ++ E A  KL+++
Sbjct: 664 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 723

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
             ++   Y L+SN+ A   RW++  ++R LM  SGI+K PG S+++       F    +S
Sbjct: 724 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRS 783

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP + +I  +L+ +  ++K+ GYVP T   + DVDEEEK  ++  HSEKLALA+GL+ + 
Sbjct: 784 HPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTS 843

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IRITKNLR+CGDCH AF  +S+I   EI+VRD  RFH FK G+CSC  +W
Sbjct: 844 PGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 277/566 (48%), Gaps = 51/566 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALS---------------- 52
           S   +LL+ CKS     QIH QI+ SGL    +    +S  AL                 
Sbjct: 45  SHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVA 104

Query: 53  ---GCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN 109
               C    +   +L     +P ++ WN L+R + +      A+ +   ML  G   P++
Sbjct: 105 SYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRAG-TRPDH 162

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG 169
           FT P VL +C  L S++ G   H  I   G E ++FI NAL+  YS  G +  A  +F+ 
Sbjct: 163 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 222

Query: 170 SLAR---DLVSYNTLINGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSAC 220
              R   D++S+N++++ + +      AL LF KM      + +  + D  + V +  AC
Sbjct: 223 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 282

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L      K+ H    +N      ++ +  A+I+ YAKCGLM  A +VF+ M   K   
Sbjct: 283 GSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF-KDVV 339

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKM 336
           +W++M++GY++ G  E A +LF  M +     D+V+WTA+I+GYSQ G   +AL LF +M
Sbjct: 340 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV------FG---RNIFLTTAV 387
              G  P+ VT+++VL AC  LGA   G  +H   ++N +      FG    ++ +  A+
Sbjct: 400 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM--ELMGL 445
           IDMY+KC S   A S+F  IP   + V  +  +I G AQ+G    ++ +F EM  E  G+
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY--GCMVDLLARDGRLDEA 503
            P+  T   +L AC+H   +  GKQ    +L +       ++   C++D+ ++ G +D A
Sbjct: 520 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 504 YGLIQSMPYDANSVIWRALLAACRLH 529
             +  SM    +++ W +++    +H
Sbjct: 580 RHVFDSMS-QKSAISWTSMMTGYGMH 604


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 371/602 (61%), Gaps = 13/602 (2%)

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYNTL 181
           +FK   QIH  +   G   D  +    +   ++    Y++ A+++ + S    L + N++
Sbjct: 18  TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77

Query: 182 INGYAQVKEPCPALWLFRKMQDSC--IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           I  + +   P  +   +R++  S   ++PD +T   +  ACT L     G Q H +  + 
Sbjct: 78  IRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRR 137

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                ++  ++T +I++YA+ G ++   +VF+++         ++M++   R G +  AR
Sbjct: 138 --GFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCR-TAMVTACARCGDVVFAR 194

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LF+ M +RD ++W AMISGY+QVG   +AL +F  M+  G+  + V M++VL AC  LG
Sbjct: 195 KLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLG 254

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           ALD G+  H  YIE       + L T ++D+YAKCG ++ A+ VF+ + +  K V  ++S
Sbjct: 255 ALDQGRWAHS-YIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEE--KNVYTWSS 311

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
            ++GLA +G GE  + +F  M+  G+ P+ VTFV+VL  CS  G V+EG++ F+SM N +
Sbjct: 312 ALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEF 371

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI+PQ+EHYGC+VDL AR GRL++A  +IQ MP   ++ +W +LL A R+++N ++G +A
Sbjct: 372 GIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLA 431

Query: 539 GQKLLDLE-PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
            +K+L+LE  +HGA YVLLSN+ A++  W+    VR+ M   G++K PG S +E NG +H
Sbjct: 432 SKKMLELETANHGA-YVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 490

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F    KSHP+  +I+ + KD++ +L+ AGY  +T  V+FD+DEEEKE  +  HSEK A+
Sbjct: 491 EFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAI 550

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFG+++ +    IRI KNLR+CGDCH    ++S+I+ REI+VRD  RFH FK G+CSC  
Sbjct: 551 AFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNG 610

Query: 718 FW 719
           FW
Sbjct: 611 FW 612



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 205/435 (47%), Gaps = 78/435 (17%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFF----ALSGCKNGLFRSRILFSQ 67
           +ALL+S  + K+  QIH ++   G    +    L+  F    ALS  K   + ++IL  +
Sbjct: 10  IALLDSGITFKEVRQIHAKLYVDGT---LKDDHLVGHFVKAVALSDHKYLDYANQIL-DR 65

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSSFK 126
            + P +F  N+++R + +S  P+++   Y  +LS G  + P+N+T  F++ +C  L   +
Sbjct: 66  SEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRE 125

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV-------------------- 166
           +G Q+H   I+ G + D  ++  LI  Y+  G +++ HKV                    
Sbjct: 126 TGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACA 185

Query: 167 -----------FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
                      FEG   RD +++N +I+GYAQV E   AL +F  MQ   ++ +    ++
Sbjct: 186 RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMIS 245

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + SACT+L     G+  H+ + +N   +   + L T ++++YAKCG M  A  VF  M  
Sbjct: 246 VLSACTQLGALDQGRWAHSYIERNK--IKITVRLATTLVDLYAKCGDMEKAMEVFWGM-E 302

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            K+   WSS ++G    G  E+  +LF  M Q                            
Sbjct: 303 EKNVYTWSSALNGLAMNGFGEKCLELFSLMKQD--------------------------- 335

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT--TAVIDMYAK 393
               G+ P+ VT V+VLR C  +G +D G+R H   + N  FG    L     ++D+YA+
Sbjct: 336 ----GVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDSMRN-EFGIEPQLEHYGCLVDLYAR 389

Query: 394 CGSIDTALSVFYKIP 408
            G ++ A+S+  ++P
Sbjct: 390 AGRLEDAVSIIQQMP 404


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 363/623 (58%), Gaps = 49/623 (7%)

Query: 104 IVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           + +P++ TFP  L S +RL    ++G Q+H   +K     +  +  +L+  Y+  G ++ 
Sbjct: 112 LPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHR 171

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF+       VS+  LI  Y    +   A+ + R    + ++PD+FT V + +AC  
Sbjct: 172 AQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACAR 231

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           + D   G+       +    +  ++ + TA +++Y KCG                     
Sbjct: 232 VADLATGETVWRAAEQE--GIAQSVFVATAAVDLYVKCG--------------------- 268

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                      ++ +AR++FD+M  +D V+W AM+ GY+  G   +AL+LF  M++ G+ 
Sbjct: 269 -----------EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVR 317

Query: 343 PDEVTMVAVLRACVGLGALDFGKRL-----HQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
           PD   +   L AC  LGALD G++        ++++N V G      TA+IDMYAKCGS 
Sbjct: 318 PDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG------TALIDMYAKCGST 371

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A  VF ++ K  K + ++N++I GL   G  +T+  +  +ME  G+K +  TF+ +LC
Sbjct: 372 AEAWVVFQQMRK--KDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLC 429

Query: 458 ACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           +C+H GL+++G+++F +M   Y I P++EHYGC+VDLL+R G L EA+ LI  MP  AN+
Sbjct: 430 SCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANA 489

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VI  ALL  C++HRNA++ E    +L+ LEP +  +YV+LSN+ +   RWE+A ++R  M
Sbjct: 490 VILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDM 549

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
            + G++K P  S++E  G +H F    KSHP + +I   L ++ +++K+ GY P T  V+
Sbjct: 550 KEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 609

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
           FDV++EEKE  + +HSEKLA+AF L+ +   ETIR+TKNLR+C DCH A KL+S I  RE
Sbjct: 610 FDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHRE 669

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD  RFH F+ G+CSC D+W
Sbjct: 670 IIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 207/464 (44%), Gaps = 45/464 (9%)

Query: 21  LKQALQIHGQIVH--SGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           L+   Q+H + +   S  N H+ +S L++ +A  G    L R++ +F ++ +P+   W  
Sbjct: 134 LRAGEQLHARSLKLPSHTNPHVLTS-LLTLYARCGL---LHRAQRVFDEMPHPSTVSWTA 189

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L+  Y  +   +EA+ +  +  + G+  P++FT   VL +CAR++   +G  +     + 
Sbjct: 190 LITAYMDAGDLREAVHVARNAFANGM-RPDSFTAVRVLTACARVADLATGETVWRAAEQE 248

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G+   +F+  A +  Y   G +  A +VF+    +D V++  ++ GYA    P  AL LF
Sbjct: 249 GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 308

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             MQ   ++PD +      SACT L    +G+Q  A+   +      N +L TA+I+MYA
Sbjct: 309 LAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ--AIRMVDWDEFLDNPVLGTALIDMYA 366

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG                +  AW                  +F QM ++D++ W AMI 
Sbjct: 367 KCG---------------STAEAWV-----------------VFQQMRKKDIIVWNAMIL 394

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G    G    A  L G+ME  G+  ++ T + +L +C   G +  G+R      +     
Sbjct: 395 GLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 454

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             I     ++D+ ++ G +  A  +   +P     V +  +++ G   H   E +  V  
Sbjct: 455 PRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAV-ILGALLGGCKIHRNAELAEHVL- 512

Query: 439 EMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
             +L+ L+P +   +V +    S+ G  E+  +    M   G++
Sbjct: 513 -TQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 555



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 5/192 (2%)

Query: 335 KMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
           ++  L  +P  +T    L++   L   L  G++LH + ++ +    N  + T+++ +YA+
Sbjct: 107 RLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLK-LPSHTNPHVLTSLLTLYAR 165

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG +  A  VF ++P +  TVS + ++I+     G    ++ V R     G++PD  T V
Sbjct: 166 CGLLHRAQRVFDEMP-HPSTVS-WTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 223

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
            VL AC+    +  G+  + +    GI   +      VDL  + G + +A  +   M  D
Sbjct: 224 RVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RD 282

Query: 514 ANSVIWRALLAA 525
            ++V W A++  
Sbjct: 283 KDAVAWGAMVGG 294


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 362/616 (58%), Gaps = 59/616 (9%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD---LFIRNALIHFYSIFGYINNAH 164
           +NFT PF L             Q+H H++K         L    ++  F S F Y   A 
Sbjct: 23  HNFTSPFELK------------QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSY---AK 67

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            +F+   A ++  +NT +  +A+   P  A+ LF ++++  I PD +T   +  AC+ L 
Sbjct: 68  LIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLL 127

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           D R GK  H  V K LG + SNM L+  ++++YA CG + +A +VF  M   +    W+ 
Sbjct: 128 DVRNGKIVHGYVEK-LG-LQSNMFLQNMIVHLYALCGEIGVARKVFDKMP-QRDVITWNI 184

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           MI+   + G  E A +LF +M +R++ SWT+MI GY+Q G   +A++LF +ME  G+ P+
Sbjct: 185 MIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPN 244

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           EVT+VAVL AC  +G L  G+R+H  +     + +NI +   +IDMY KCG ++ A  +F
Sbjct: 245 EVTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF 303

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             + +  +TV  ++++I+GLA HG  E ++A+F +M   G+KP+ VTF+ +L ACSH G+
Sbjct: 304 DNMEE--RTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGM 361

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           VE+G+++F SM  +YGI P++EHYGCMVDL +R G L EA+  I +MP   N V+W ALL
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
             C++H+N K+ E A + L  L+P +  +YV+LSN+ AE  RWE+  +VRKLM D G   
Sbjct: 422 GGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGT-- 479

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
              W                         E +L+ M +K    GYVPNT  V+ D++E++
Sbjct: 480 ---W-------------------------EKLLQRMKLK----GYVPNTSVVLLDMEEDQ 507

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  +  HSEKLA+ FGLI +     IRI KNLR+C DCH A K++S +  REI+VRD  
Sbjct: 508 KEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRN 567

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G+CSC D+W
Sbjct: 568 RFHCFKNGSCSCGDYW 583



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 203/434 (46%), Gaps = 68/434 (15%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           L H     LL +  S  +  Q+H  ++ +  N  +SS  L    ++    +    ++++F
Sbjct: 13  LHHRPSTHLLHNFTSPFELKQLHAHLLKT--NSPLSSLPLSRVASVCAFNSSFSYAKLIF 70

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +D   +  WNT +R ++  DSP +A+ L+   L +  +SP+++T  FVL +C+RL   
Sbjct: 71  QLLDASEVTHWNTCLRSFAEGDSPADAISLFYR-LREFDISPDHYTCSFVLKACSRLLDV 129

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN------ 179
           ++G  +H ++ K GL+ ++F++N ++H Y++ G I  A KVF+    RD++++N      
Sbjct: 130 RNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARL 189

Query: 180 -------------------------TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
                                    ++I GYAQ  +   A+ LF +M+D+ + P+  T V
Sbjct: 190 VKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVV 249

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           A+  AC ++ +  +G++ H   + N      N+ +   +I+MY KCG +  A R+F  M 
Sbjct: 250 AVLVACADMGNLVLGRRIHD--FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             ++  +WS+MI+G    G+ E                                AL LF 
Sbjct: 308 -ERTVVSWSAMIAGLAAHGRAE-------------------------------DALALFN 335

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           KM + G+ P+ VT + +L AC  +G ++ G++       +      I     ++D++++ 
Sbjct: 336 KMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRA 395

Query: 395 GSIDTALSVFYKIP 408
           G +  A      +P
Sbjct: 396 GLLQEAHEFIMNMP 409


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 362/618 (58%), Gaps = 39/618 (6%)

Query: 104 IVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           + +P++ TFP  L S +RL    ++G Q+H   +K     +  +  +L+  Y+  G ++ 
Sbjct: 65  LPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHR 124

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF+       VS+  LI  Y    +   A+ + R    + ++PD+FT V + +AC  
Sbjct: 125 AQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACAR 184

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           + D   G+       +    +  ++ + TA +++Y KCG                     
Sbjct: 185 VADLATGETVWRAAEQE--GIAQSVFVATAAVDLYVKCG--------------------- 221

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                      ++ +AR++FD+M  +D V+W AM+ GY+  G   +AL+LF  M++ G+ 
Sbjct: 222 -----------EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVR 270

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD   +   L AC  LGALD G++   + ++   F  N  L TA+IDMYAKCGS   A  
Sbjct: 271 PDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWV 329

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF ++ K  K + ++N++I GL   G  +T+  +  +ME  G+K +  TF+ +LC+C+H 
Sbjct: 330 VFQQMRK--KDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHT 387

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GL+++G+++F +M   Y I P++EHYGC+VDLL+R G L EA+ LI  MP  AN+VI  A
Sbjct: 388 GLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGA 447

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL  C++HRNA++ E    +L+ LEP +  +YV+LSN+ +   RWE+A ++R  M + G+
Sbjct: 448 LLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGV 507

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K P  S++E  G +H F    KSHP + +I   L ++ +++K+ GY P T  V+FDV++
Sbjct: 508 EKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVED 567

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           EEKE  + +HSEKLA+AF L+ +   ETIR+TKNLR+C DCH A KL+S I  REI+VRD
Sbjct: 568 EEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRD 627

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH F+ G+CSC D+W
Sbjct: 628 NNRFHCFRDGSCSCNDYW 645



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 207/464 (44%), Gaps = 45/464 (9%)

Query: 21  LKQALQIHGQIVH--SGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           L+   Q+H + +   S  N H+ +S L++ +A  G    L R++ +F ++ +P+   W  
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTS-LLTLYARCGL---LHRAQRVFDEMPHPSTVSWTA 142

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L+  Y  +   +EA+ +  +  + G+  P++FT   VL +CAR++   +G  +     + 
Sbjct: 143 LITAYMDAGDLREAVHVARNAFANGM-RPDSFTAVRVLTACARVADLATGETVWRAAEQE 201

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G+   +F+  A +  Y   G +  A +VF+    +D V++  ++ GYA    P  AL LF
Sbjct: 202 GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             MQ   ++PD +      SACT L    +G+Q  A+   +      N +L TA+I+MYA
Sbjct: 262 LAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ--AIRMVDWDEFLDNPVLGTALIDMYA 319

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG                +  AW                  +F QM ++D++ W AMI 
Sbjct: 320 KCG---------------STAEAWV-----------------VFQQMRKKDIIVWNAMIL 347

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G    G    A  L G+ME  G+  ++ T + +L +C   G +  G+R      +     
Sbjct: 348 GLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 407

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             I     ++D+ ++ G +  A  +   +P     V +  +++ G   H   E +  V  
Sbjct: 408 PRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAV-ILGALLGGCKIHRNAELAEHVL- 465

Query: 439 EMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
             +L+ L+P +   +V +    S+ G  E+  +    M   G++
Sbjct: 466 -TQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 508



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 5/192 (2%)

Query: 335 KMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
           ++  L  +P  +T    L++   L   L  G++LH + ++ +    N  + T+++ +YA+
Sbjct: 60  RLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLK-LPSHTNPHVLTSLLTLYAR 118

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG +  A  VF ++P +  TVS + ++I+     G    ++ V R     G++PD  T V
Sbjct: 119 CGLLHRAQRVFDEMP-HPSTVS-WTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAV 176

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
            VL AC+    +  G+  + +    GI   +      VDL  + G + +A  +   M  D
Sbjct: 177 RVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RD 235

Query: 514 ANSVIWRALLAA 525
            ++V W A++  
Sbjct: 236 KDAVAWGAMVGG 247


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 389/713 (54%), Gaps = 81/713 (11%)

Query: 8   HSSLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           H   + LL  C    S++Q  +I  QI+ S +     +   + F  +S     L  S ++
Sbjct: 21  HRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLI 80

Query: 65  FSQ-IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARL 122
           F+  +  PNIF +N L++ +S+ ++    +  + + L      +P+ +TF  VL +CA L
Sbjct: 81  FNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGL 140

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           +    G ++HC + K+G E +LF+RN+L+  Y   G    A K+F+  + RD+VS+NTLI
Sbjct: 141 AQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLI 200

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +GY                           F  M      + D               G 
Sbjct: 201 SGYC--------------------------FSGMVDKARMVFD---------------GM 219

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  N++  + +I+ YA+ G +  A ++F  M M ++  +W++MI+GY +  K   A +LF
Sbjct: 220 MEKNLVSWSTMISGYARVGNLEEARQLFENMPM-RNVVSWNAMIAGYAQNEKYADAIELF 278

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
            QM                                  G+ P++VT+V+VL AC  LGALD
Sbjct: 279 RQMQHEG------------------------------GLAPNDVTLVSVLSACAHLGALD 308

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK +H ++I        +FL  A+ DMYAKCG +  A  VF+++ +  + V  ++ II 
Sbjct: 309 LGKWIH-RFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHE--RDVISWSIIIM 365

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           GLA +G    +   F EM   GL+P+ ++F+ +L AC+H GLV++G ++F+ M   YGI 
Sbjct: 366 GLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGIT 425

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P++EHYGC+VDLL+R GRLD+A  LI SMP   N ++W ALL  CR++++A+ GE    +
Sbjct: 426 PKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWR 485

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           +L+L+ +H    V L+N+ A   R ++A   R  M D+   K PG S+IE N +++ F  
Sbjct: 486 ILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFM 545

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
              SHPQ+  I  M++++  K+K AGY P T  V+ ++DEEEKE  +S HSEKLALAFGL
Sbjct: 546 GDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGL 605

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           IN+    TIRI KNLR+C DCH A K++S+I  REI+VRD  RFH FK G CS
Sbjct: 606 INTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 258/774 (33%), Positives = 414/774 (53%), Gaps = 98/774 (12%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H +L  +L++C    S +     HG I  +G   ++   + L++ ++  G    L  + 
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG---SLEEAS 210

Query: 63  ILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-----FTFPF 114
           ++F +I      ++  WN+++  + +S +   AL L++ M       P N      +   
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 270

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L +C  L +     ++H + I+ G   D+F+ NALI  Y+  G + NA KVF     +D
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330

Query: 175 LVSYNTLINGYAQV--------------KEPCP---------------------ALWLFR 199
           +VS+N ++ GY+Q               KE  P                     AL LFR
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--------LGCVGSNMLLKT 251
           +M  S   P+  T +++ SAC  L     G + HA   KN         G    ++++  
Sbjct: 391 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 450

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--MDQRD 309
           A+I+MY+KC       R F                         + AR +FD   +++R+
Sbjct: 451 ALIDMYSKC-------RSF-------------------------KAARSIFDDIPLEERN 478

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +V+WT MI G++Q G  + AL+LF +M  E  G+ P+  T+  +L AC  L A+  GK++
Sbjct: 479 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 538

Query: 368 HQQYIENVVFGRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           H   + +  +  +  F+   +IDMY+KCG +DTA  VF  + +  K+   + S+++G   
Sbjct: 539 HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ--KSAISWTSMMTGYGM 596

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQME 485
           HG G  ++ +F +M   G  PD +TF+ VL ACSH G+V++G  +F+SM  +YG+ P+ E
Sbjct: 597 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 656

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C +DLLAR GRLD+A+  ++ MP +  +V+W ALL+ACR+H N ++ E A  KL+++
Sbjct: 657 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 716

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
             ++   Y L+SN+ A   RW++  ++R LM  SGI+K PG S+++       F    +S
Sbjct: 717 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRS 776

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP + +I  +L+ +  ++K+ GYVP T   + DVDEEEK  ++  HSEKLALA+GL+ + 
Sbjct: 777 HPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTS 836

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IRITKNLR+CGDCH AF  +S+I   EI+VRD  RFH FK G+CSC  +W
Sbjct: 837 PGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 277/566 (48%), Gaps = 51/566 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALS---------------- 52
           S   +LL+ CKS     QIH QI+ SGL    +    +S  AL                 
Sbjct: 38  SHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVA 97

Query: 53  ---GCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN 109
               C    +   +L     +P ++ WN L+R + +      A+ +   ML  G   P++
Sbjct: 98  SYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRAG-TRPDH 155

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG 169
           FT P VL +C  L S++ G   H  I   G E ++FI NAL+  YS  G +  A  +F+ 
Sbjct: 156 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 215

Query: 170 SLAR---DLVSYNTLINGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSAC 220
              R   D++S+N++++ + +      AL LF KM      + +  + D  + V +  AC
Sbjct: 216 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 275

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L      K+ H    +N      ++ +  A+I+ YAKCGLM  A +VF+ M   K   
Sbjct: 276 GSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF-KDVV 332

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKM 336
           +W++M++GY++ G  E A +LF  M +     D+V+WTA+I+GYSQ G   +AL LF +M
Sbjct: 333 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV------FG---RNIFLTTAV 387
              G  P+ VT+++VL AC  LGA   G  +H   ++N +      FG    ++ +  A+
Sbjct: 393 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM--ELMGL 445
           IDMY+KC S   A S+F  IP   + V  +  +I G AQ+G    ++ +F EM  E  G+
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY--GCMVDLLARDGRLDEA 503
            P+  T   +L AC+H   +  GKQ    +L +       ++   C++D+ ++ G +D A
Sbjct: 513 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 504 YGLIQSMPYDANSVIWRALLAACRLH 529
             +  SM    +++ W +++    +H
Sbjct: 573 RHVFDSMS-QKSAISWTSMMTGYGMH 597


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/699 (37%), Positives = 380/699 (54%), Gaps = 90/699 (12%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V+PNN+TFPF L +C+ L+    G  IH H I  GL+ DLF+  AL+  Y     + +A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 165 KVFEGSLARDLVSYNTLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
            +F    ARDLV++N ++ GYA   +     A  L  +MQ   ++P+A T VA+     +
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSN----------MLLKTAVINMYAKCGLMNMAERVFST 272
                 G   HA   +   C+  N          +LL TA+++MYAKCG +  A RVF  
Sbjct: 126 QGALAQGTSVHAYCIR--ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR------------------------ 308
           M  +++   WS++I G+    ++ +A  LF  M  +                        
Sbjct: 184 MP-ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLR 242

Query: 309 ----------------DLVSWTAMISGYSQVGGFSQALELFG------------------ 334
                           DL +  +++S Y++ G   QA+ LF                   
Sbjct: 243 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 302

Query: 335 -------------KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
                        KM++  + PD  TMV+++ AC  L AL  G+  H   I   +     
Sbjct: 303 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL-ASET 361

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            +  A+IDMYAKCG ID +  VF  +P   + +  +N++I+G   HGLG+ + A+F EM 
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNMMPS--RDIVSWNTMIAGYGIHGLGKEATALFLEMN 419

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
            +G  PDGVTF+ +L ACSH GLV EGK +F  M + YG+ P+MEHY CMVDLL+R G L
Sbjct: 420 NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFL 479

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
           DEAY  IQSMP  A+  +W ALL ACR+++N  +G+   + + +L P+   ++VLLSN+ 
Sbjct: 480 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIY 539

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           +   R++EA +VR +    G +K PG S+IE NG+LH F+   +SHPQ+ EI   L ++ 
Sbjct: 540 SAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNIL 599

Query: 621 MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
           + +K  GY P+T  V+ D++EEEKE  +  HSEKLA+A+G+++    +TI +TKNLR+CG
Sbjct: 600 VGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCG 659

Query: 681 DCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           DCH   K +S + RR I+VRDA RFH FK G CSC DFW
Sbjct: 660 DCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/821 (32%), Positives = 426/821 (51%), Gaps = 119/821 (14%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFS 66
           +  LL    + K +   + IH +I+          ++L++ ++   C    FR +R L  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRL--GLLGLRNRLVNLYSKCQC----FRVARKLVI 106

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLY------------------------------ 96
               P++  W+ L+ GY ++   +EAL+ Y                              
Sbjct: 107 DSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLEL 166

Query: 97  ----------TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
                     T M+S GI SPN F+   VLN+CA L     G ++H ++IK G + D F 
Sbjct: 167 GKQIHRVALVTEMISTGI-SPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFS 225

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            NAL+  Y+  G    A  VF      D+VS+N +I G    ++   AL L  KM    +
Sbjct: 226 ANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRV 285

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYK---------NLGCVG------------- 244
            P  FT  +   AC  +   ++G+Q H+ + K          +G +              
Sbjct: 286 APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARM 345

Query: 245 -------SNMLLKTAVINMYAKCGLMNMAERVFSTM-------------GMSKSTAAWS- 283
                   ++++  ++I+ Y+ CG    A  +F+ M              + KSTA    
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQA 405

Query: 284 ----------SMISGYTREGKI--------------ERARQLFDQMDQRDLVSWTAMISG 319
                     S+ SGY  +G +              E A ++F+     DLV++T+MI+ 
Sbjct: 406 NGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITA 465

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           YSQ G   +AL+++ +M+   I PD     ++  AC  L A + GK++H   ++  +   
Sbjct: 466 YSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLS- 524

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           ++F   ++++MYAKCGSID A  +F +I  + + +  ++++I GLAQHG G  ++ +F +
Sbjct: 525 DVFAGNSLVNMYAKCGSIDDASCIFNEI--SWRGIVSWSAMIGGLAQHGHGRKALQLFYQ 582

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           M   G+ P+ +T V+VL AC+H GLV E ++FF  M   +GI P  EHY CMVD+L R G
Sbjct: 583 MLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVG 642

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           RLDEA  L++ MP+ A++ +W ALL A R+H+N ++G  A + LL LEP+    ++LL+N
Sbjct: 643 RLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLAN 702

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + A T  W+   +VR+ M +S ++K PG S+IE    ++ F+   +SHP++KEI + L D
Sbjct: 703 IYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDD 762

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           +  +L SAGYVP     + DV++ EKE ++ +HSEKLA+AFGLI +     IR+ KNLR+
Sbjct: 763 LRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRV 822

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           C DCH AFK +S++  REI+VRD  RFH F+ G+CSC D+W
Sbjct: 823 CIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/711 (35%), Positives = 391/711 (54%), Gaps = 40/711 (5%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +LL+L    K+L    Q++ QI+ + L+  +    +I  F        L  +   F+ I 
Sbjct: 17  TLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMI--FGAYIQLGSLHVASKAFNHIT 74

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  WNT++  +S++    + L L+  ML +G +  ++F   F + +C  LS F+   
Sbjct: 75  FENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV-DSFNLVFAVKACFGLSLFQGAK 133

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
             H   IK  LE D ++  AL++ Y+  G +  AHKVFE    ++ V +  +I G+    
Sbjct: 134 LFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFS 193

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           E      LF +M+ S  + D F    +  AC  +   + GK FH +  K    + SN  L
Sbjct: 194 EEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKK-NFIDSNFFL 252

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +T++++MY KCG ++ A                                 +LF+++  RD
Sbjct: 253 QTSLVDMYMKCGFLDFA--------------------------------LKLFEEISYRD 280

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           +V W+A+I+G+++ G   +++ +F +M +  + P+ VT  +++ AC  LG+L  G+ +H 
Sbjct: 281 VVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHG 340

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             I N V   ++   T+ IDMYAKCG I TA  VF +IP+  K V  ++++I+G   HGL
Sbjct: 341 YMIRNGV-ELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPE--KNVFSWSTMINGFGMHGL 397

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
              ++ +F EM  +   P+ VTFV+VL ACSH G +EEG   F+SM  +YGI P  EHY 
Sbjct: 398 CAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYA 457

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R G++DEA   I +MP +  +  W ALL ACR+HR A++ E   +KLL LE D
Sbjct: 458 CMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESD 517

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
               YV+LSN+ A+   WE  ++ R  M + GI K  G++ IE    L+ F +  +   +
Sbjct: 518 QSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYK 577

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
             +IE +   +  +++  GYVP+   V+ DVD+E K+ V+  HSEKLA+ FGL+NS    
Sbjct: 578 NTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGM 637

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IRITKN+R+CGDCH A K +S I RR+I++RD  RFH  + G CSC D+W
Sbjct: 638 PIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQ 67
           +S++    S  SLKQ   +HG ++ +G+   + + +  I  +A  GC    +R   +F Q
Sbjct: 320 ASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYR---VFCQ 376

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I   N+F W+T++ G+       EAL L+  M S   + PN+ TF  VL++C+     + 
Sbjct: 377 IPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQL-PNSVTFVSVLSACSHSGRIEE 435

Query: 128 G 128
           G
Sbjct: 436 G 436


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/697 (36%), Positives = 387/697 (55%), Gaps = 58/697 (8%)

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGY-------------------------------SRSD 87
           F SR LFSQI+ P IF  N+++ GY                               S+S 
Sbjct: 191 FASR-LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
             +EAL L   M  KG V  ++ T+   L +CARL S   G Q+H  +I+   + D ++ 
Sbjct: 250 RVREALGLVVEMHRKG-VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           +ALI  Y+  G    A +VF     R+ VS+  LI G  Q +    ++ LF +M+   + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN--MLLKTAVINMYAKCGLMNM 265
            D F    + S C    D  +G+Q H++  K+    G N  +++  ++I++YAKCG +  
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKS----GHNRAIVVSNSLISLYAKCGDLQN 424

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           AE VFS+M   +   +W+SMI+ Y++ G I +AR+ FD M  R+ ++W AM+  Y Q G 
Sbjct: 425 AEFVFSSMS-ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGA 483

Query: 326 FSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
               L+++  M S   + PD VT V + R C  +GA   G ++    ++  +   N+ + 
Sbjct: 484 EEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVA 542

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A I MY+KCG I  A  +F  +  N K V  +N++I+G +QHG+G+ +   F +M   G
Sbjct: 543 NAAITMYSKCGRISEAQKLFDLL--NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKG 600

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            KPD +++V VL  CSH GLV+EGK +F+ M   +GI P +EH+ CMVDLL R G L EA
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEA 660

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-PDHGAHYVLLSNMLAE 562
             LI  MP    + +W ALL+AC++H N ++ E+A + + +L+ PD G+ Y+LL+ + ++
Sbjct: 661 KDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGS-YMLLAKIYSD 719

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             + +++ QVRKLM D GI+K PG+S++E    +H F A   SHPQ   I   + ++  K
Sbjct: 720 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEK 779

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +   GYV           E  +  +  +HSEKLA+AFG+++  +   I I KNLRICGDC
Sbjct: 780 IAHLGYVRT---------ESPRSEI--HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDC 828

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H   KL+S +  RE ++RD +RFH FK G+CSC D+W
Sbjct: 829 HTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 210/444 (47%), Gaps = 40/444 (9%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF------- 167
            L SC    +      +H  ++  GL   +F++N L+H Y   G +++A ++        
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 168 --------------EGSLA-----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
                         +GSL+           RD+ S+NTL++GY Q +     L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 203 DSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            S    P+AFTF  +  +C  L    +  Q   + +K       +  ++TA+++M+ +CG
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFD--FWGDPDVETALVDMFVRCG 187

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            ++ A R+FS +    +    +SM++GY +   I+ A + F+ M +RD+VSW  MI+  S
Sbjct: 188 YVDFASRLFSQI-ERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G   +AL L  +M   G+  D  T  + L AC  L +L +GK+LH + I ++    + 
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP-QIDP 305

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++ +A+I++YAKCGS   A  VF  + ++  +VS +  +I G  Q+     S+ +F +M 
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSL-QDRNSVS-WTVLIGGSLQYECFSKSVELFNQMR 363

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
              +  D     T++  C +   +  G+Q     L  G    +     ++ L A+ G L 
Sbjct: 364 AELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 502 EAYGLIQSMPYDANSVIWRALLAA 525
            A  +  SM  + + V W +++ A
Sbjct: 424 NAEFVFSSMS-ERDIVSWTSMITA 446



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 235/560 (41%), Gaps = 105/560 (18%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNTLM GY ++    + L  + SM   G   PN FTF  V+ SC  L 
Sbjct: 93  LFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152

Query: 124 SFKSGCQ------------------------IHCHIIKFGLEF-------DLFIRNALIH 152
             +   Q                        + C  + F            +F RN+++ 
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLA 212

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y+    I++A + FE    RD+VS+N +I   +Q      AL L  +M    ++ D+ T
Sbjct: 213 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 272

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +  +AC  L     GKQ HA V ++L  +  +  + +A+I +YAKCG    A+RVF++
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQI--DPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +   +++ +W+ +I G                                 Q   FS+++EL
Sbjct: 331 L-QDRNSVSWTVLIGGSL-------------------------------QYECFSKSVEL 358

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M +  +  D+  +  ++  C     L  G++LH   +++    R I ++ ++I +YA
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS-GHNRAIVVSNSLISLYA 417

Query: 393 KCGSIDTA------------------LSVFYKIPKNLKTVSLF-----------NSIISG 423
           KCG +  A                  ++ + +I   +K    F           N+++  
Sbjct: 418 KCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGA 477

Query: 424 LAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             QHG  E  + ++  M     + PD VT+VT+   C+  G  + G Q     +  G+  
Sbjct: 478 YIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLIL 537

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
            +      + + ++ GR+ EA  L   +    + V W A++     H    +G+ A +  
Sbjct: 538 NVSVANAAITMYSKCGRISEAQKLFDLLN-GKDVVSWNAMITGYSQH---GMGKQAAKTF 593

Query: 543 LDL-----EPDHGAHYVLLS 557
            D+     +PD+ ++  +LS
Sbjct: 594 DDMLSKGAKPDYISYVAVLS 613



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 166/345 (48%), Gaps = 16/345 (4%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFR 60
           R ++  +SL++L   C  L+ A     + V S ++    +S + +I+ ++  G    + +
Sbjct: 404 RAIVVSNSLISLYAKCGDLQNA-----EFVFSSMSERDIVSWTSMITAYSQIG---NIIK 455

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F  +   N   WN ++  Y +  + ++ L +Y++MLS+  V+P+  T+  +   CA
Sbjct: 456 AREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 515

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + + K G QI  H +K GL  ++ + NA I  YS  G I+ A K+F+    +D+VS+N 
Sbjct: 516 DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNA 575

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GY+Q      A   F  M     +PD  ++VA+ S C+     + GK +  ++ +  
Sbjct: 576 MITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVH 635

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---- 296
           G +   +   + ++++  + G +  A+ +   M M  +   W +++S     G  E    
Sbjct: 636 G-ISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAEL 694

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            A+ +F ++D  D  S+  +   YS  G    + ++   M   GI
Sbjct: 695 AAKHVF-ELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/625 (38%), Positives = 349/625 (55%), Gaps = 39/625 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH  II   L     I   LI   S+   IN++  VF     ++L ++N LI G     
Sbjct: 99  QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK----------- 238
               A++ FR M  S I+PD  T+  +  +   L    +G   H ++ +           
Sbjct: 159 HFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRV 218

Query: 239 ----------NLGCV-------------GSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
                      LG               GS+ LL   +I    K G M  A ++F  M  
Sbjct: 219 SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP- 277

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            K   +WS++I G+ + G ++RA +LFDQM ++++VSWT M+ G+S+ G   +AL +F K
Sbjct: 278 KKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSK 337

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M   G+ P+  T+V+ L AC  +G L+ G R+H+ YI++        L TA++DMYAKCG
Sbjct: 338 MLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHK-YIKDNGLHLTEALGTALVDMYAKCG 396

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
           +I++A  VF +  +  K++  +  +I G A HG  E +IA F++M   G+KPD V F+ +
Sbjct: 397 NIESASEVFGETEQ--KSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLAL 454

Query: 456 LCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L AC H G V+ G  FF+SM L+Y I+P M+HY  +VD+L R G+L EA   I+ MP + 
Sbjct: 455 LTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNP 514

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           + VIW AL  ACR H+  K+ + A  KLL LEP H  +Y+ LSN  A   +WE+A +VR 
Sbjct: 515 DFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRV 574

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           LM + G+ K  GWS IE  G +HRF++    H  +K I L L+++       GY+P T  
Sbjct: 575 LMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEW 634

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+ ++++EEKE V+  H EKLALAF LI +    TIRI KNL++CGDCH   K  S+I +
Sbjct: 635 VLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQ 694

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REIM+RD  RFH FK G+CSC D W
Sbjct: 695 REIMLRDMKRFHHFKDGSCSCRDHW 719



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 216/506 (42%), Gaps = 111/506 (21%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLFRSRILFSQI 68
            ++L+   K++ Q  QIH QI+     H++SSS LI+    + S  +  +  S  +F+  
Sbjct: 84  FISLIHGSKTILQLHQIHAQII----IHNLSSSSLITTQLISSSSLRKSINHSLAVFNHH 139

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F +N L+RG + +     A+  +  ML  GI  P+  T+PFVL S A L S + G
Sbjct: 140 KPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGI-KPDRLTYPFVLKSMAGLFSTELG 198

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR--------------- 173
             IHC I++ G+E D F+R +L+  Y     + +A KVF+ S  R               
Sbjct: 199 MAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIK 258

Query: 174 ---------------------DLVSYNTLINGYA-------------QVKEPCPALW--- 196
                                + VS++TLI+G+A             Q+ E     W   
Sbjct: 259 GCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTM 318

Query: 197 ---------------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
                          +F KM +  ++P+AFT V+  SAC ++     G + H  +  N  
Sbjct: 319 VDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDN-- 376

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            +     L TA+++MYAKCG +  A  VF      KS   W+ MI G+            
Sbjct: 377 GLHLTEALGTALVDMYAKCGNIESASEVFGETE-QKSIRTWTVMIWGWA----------- 424

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
                          I G+S+     QA+  F +M   GI PDEV  +A+L AC+  G +
Sbjct: 425 ---------------IHGHSE-----QAIACFKQMMFAGIKPDEVVFLALLTACMHSGQV 464

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D G         +     ++   T ++DM  + G +  AL    ++P N   V ++ ++ 
Sbjct: 465 DIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFV-IWGALF 523

Query: 422 SGLAQHGLGETSIAVFREMELMGLKP 447
                H   +T +A F   +L+ L+P
Sbjct: 524 CACRAH--KKTKMAKFALNKLLKLEP 547



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 166/333 (49%), Gaps = 15/333 (4%)

Query: 18  CK--SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFSQIDNPNIF 74
           CK  S+K+A+++   +       ++S S LI  FA    KNG + R+  LF Q+   N+ 
Sbjct: 261 CKAGSMKKAVKLFKAMPK---KENVSWSTLIDGFA----KNGDMDRAMELFDQMPEKNVV 313

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            W T++ G+SR+   ++AL +++ ML +G V PN FT    L++CA++   ++G +IH +
Sbjct: 314 SWTTMVDGFSRNGDSEKALSMFSKMLEEG-VRPNAFTIVSALSACAKIGGLEAGLRIHKY 372

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           I   GL     +  AL+  Y+  G I +A +VF  +  + + ++  +I G+A       A
Sbjct: 373 IKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQA 432

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           +  F++M  + I+PD   F+A+ +AC       IG  F   +  +  C+  +M   T ++
Sbjct: 433 IACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDY-CIEPSMKHYTLIV 491

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV--- 311
           +M  + G +  A R    M M+     W ++        K + A+   +++ + +     
Sbjct: 492 DMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTG 551

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           ++  + + Y+ +G +  A  +   M++ G+H +
Sbjct: 552 NYIFLSNAYAALGQWEDAERVRVLMQNRGVHKN 584



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 366 RLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVF-YKIPKNLKTVSLFNSIIS 422
           +LHQ + + ++     +  +TT +I   +   SI+ +L+VF +  PKNL T   FN++I 
Sbjct: 96  QLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFT---FNALIR 152

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
           GL  +     +I  FR M   G+KPD +T+  VL + +     E G      +L  GI+ 
Sbjct: 153 GLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIEL 212

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANS--VIWRALLAAC 526
                  +VD+  +  +L  A+ +    P  +D+ S  ++W  L+  C
Sbjct: 213 DSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGC 260


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 355/611 (58%), Gaps = 14/611 (2%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH--KVFEGSLA 172
            L+ C  L+  K   Q+H  I+  GL+   ++   LI   +      + +   +F     
Sbjct: 52  TLDGCKNLTQIK---QVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNY 108

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            +   YN LI GY   +    +   +  M+   + P +FTF A+F AC    D  +G+Q 
Sbjct: 109 PNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQI 168

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H      +G  G ++ +  ++I+MY KCG +    +VF  M  ++   +W+ +IS Y + 
Sbjct: 169 HGQTIL-VGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP-NRDVISWTELISAYVKS 226

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +E A +LFD +  +D+V+WT M+SG++Q     +A+  F KM+  G+  DE+T++ V+
Sbjct: 227 GNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVI 286

Query: 353 RACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            AC  LGA  +   + +   E   FG   ++ + +A+IDMY+KCGS+  A  VF  + + 
Sbjct: 287 SACAQLGAAKYADWI-RDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKE- 344

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + V  ++S+I G A HG    ++ +F EM    +KP+ VTF+ VL ACSH G+VE+G Q
Sbjct: 345 -RNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQ 403

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            FE M   YGIKP  +HY CMVDLL R GRL EA+ L+++MP + +  +W ALL ACR+H
Sbjct: 404 IFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIH 463

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           ++  I  IA   L +LEP    +Y+LL+N+ A   RW +   VRKLM   G++K P +S+
Sbjct: 464 KSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSW 523

Query: 590 IE-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           IE   G +H F +   +HP++ EI+  L+D+  +L++ GY P+   V +DV++E+K  ++
Sbjct: 524 IESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRIL 583

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLALAFGLI++     IRI KNLRIC DCH      S+I  REI+VRD +RFH F
Sbjct: 584 MTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHF 643

Query: 709 KKGNCSCMDFW 719
             G CSC +FW
Sbjct: 644 HDGICSCGNFW 654



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 184/380 (48%), Gaps = 55/380 (14%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI----- 63
           S ++  L+ CK+L Q  Q+H +I+ +GL+         S + L+     L +  I     
Sbjct: 47  SQIVTTLDGCKNLTQIKQVHARILLNGLDQ--------SCYVLAKLIRTLTKLNIPVDPY 98

Query: 64  ---LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
              +F+Q++ PN F++N L+RGY   +  +E+   Y+ M  +G+V P +FTF  +  +C 
Sbjct: 99  PLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVV-PVSFTFTALFKACG 157

Query: 121 RLSSFKSGCQIHCH-IIKFGLEFDLFIRNALIHFYSIFGYINNAHKV------------- 166
                  G QIH   I+  G   DL + N++I  Y   G++    KV             
Sbjct: 158 AKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWT 217

Query: 167 ------------------FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
                             F+G   +D+V++  +++G+AQ  +P  A+  F KMQ+  ++ 
Sbjct: 218 ELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVET 277

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           D  T + + SAC +L   +       V  K+      ++++ +A+I+MY+KCG +  A R
Sbjct: 278 DEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYR 337

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVG 324
           VF  M   ++  ++SSMI G+   G++  A +LFD+M + ++    V++  +++  S  G
Sbjct: 338 VFQGM-KERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAG 396

Query: 325 GFSQALELFGKMES-LGIHP 343
              Q  ++F  ME   GI P
Sbjct: 397 MVEQGWQIFELMEKCYGIKP 416


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/640 (37%), Positives = 367/640 (57%), Gaps = 53/640 (8%)

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           SR D PQ   + +  +  K  VS        +L  C+ +  FK   Q H  I+K GL  D
Sbjct: 15  SREDPPQSPELSF-KLGEKECVS--------LLKKCSNMEEFK---QSHARILKLGLFGD 62

Query: 144 LFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            F  + L+   ++  +G ++ A  +F          +NT++ G+ +      AL  +++M
Sbjct: 63  SFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEM 122

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            +  ++PD FT+  +  AC  L     G Q HA + K LG + +++ ++ ++I+MY KC 
Sbjct: 123 AERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILK-LG-LENDVFVQNSLISMYGKC- 179

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                                          G+I     +F+QM++R + SW+A+I+ ++
Sbjct: 180 -------------------------------GEIGVCCAVFEQMNERSVASWSALITAHA 208

Query: 322 QVGGFSQALELFGKMESLGI-HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            +G +S  L L G M + G    +E  +V+VL AC  LGALD G+ +H   + NV  G N
Sbjct: 209 SLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVS-GLN 267

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + + T++I+MY KCGS+   + +F K+ K  K    ++ +ISGLA HG G   + +F EM
Sbjct: 268 VIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLS--YSVMISGLAMHGYGREGLRIFTEM 325

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGR 499
              GL+PD + +V VL ACSH GLV+EG Q F  M L +GI+P ++HYGCMVDL+ R G+
Sbjct: 326 LEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGK 385

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           +DEA  LI+SMP + N V+WR+LL+A ++H N + GEIA ++L  L+    + YV+LSNM
Sbjct: 386 IDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNM 445

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A+  RWE+  + R  M   G+ + PG+S +E    +HRF++    HPQ++ +  ML  M
Sbjct: 446 YAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQM 505

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             +LK  GY P+T QV+ DVDEEEK+  +S HS+KLA+A+ LI++     IRI +NLR+C
Sbjct: 506 EWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMC 565

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   KL+S I+ REI VRD  RFH FK G CSC D+W
Sbjct: 566 NDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 203/418 (48%), Gaps = 39/418 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++LL+ C ++++  Q H +I+  GL      +S L++  ALS   +  +   I F Q+D 
Sbjct: 35  VSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSI-FRQMDE 93

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
              F +NT+MRG+ +  + +EAL+ Y  M  +G V P+NFT+P +L +CARL + + G Q
Sbjct: 94  LGSFQFNTMMRGHVKDMNTEEALITYKEMAERG-VKPDNFTYPTLLKACARLPAVEEGMQ 152

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H HI+K GLE D+F++N+LI  Y   G I     VFE    R + S++ LI  +A +  
Sbjct: 153 VHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGM 212

Query: 191 PCPALWLFRKMQDSCI-QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               L L   M +    + +    V++ SACT L    +G+  H  + +N+   G N+++
Sbjct: 213 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVS--GLNVIV 270

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +T++I MY KCG +     +F  M   K+  ++S MISG                     
Sbjct: 271 ETSLIEMYLKCGSLYKGMCLFQKMA-KKNKLSYSVMISGLA------------------- 310

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                  + GY + G     L +F +M   G+ PD++  V VL AC   G +  G +   
Sbjct: 311 -------MHGYGREG-----LRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFN 358

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           +          I     ++D+  + G ID AL +   +P     V L+ S++S    H
Sbjct: 359 RMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV-LWRSLLSASKVH 415


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 378/662 (57%), Gaps = 43/662 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F  +   +  +WNT++ G+SR+   ++++ ++  ML  G+ S ++ T   VL + A
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGL-SFDSTTLATVLTAVA 225

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L  ++ G  I C   K GL  D+++   LI  YS  G       +F+     DL+SYN 
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNA 285

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY    E   A+ LFR++  S  + ++ T V +       N  ++ +          
Sbjct: 286 MISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQ------- 338

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                N+ LK  +I                  +  S STA    + + Y R  +++ ARQ
Sbjct: 339 -----NLSLKIGII------------------LQPSVSTA----LTTVYCRLNEVQFARQ 371

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LFD+  ++ L SW AMISGY+Q G   +A+ LF +M    + P+ VT+ ++L AC  LGA
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGA 430

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF-YKIPKNLKTVSLFNS 419
           L  GK +H   I++     N++++TA++DMYAKCGSI  A  +F   + KN+ T   +N+
Sbjct: 431 LSIGKWVHG-LIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVT---WNA 486

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I+G   HG G+ ++ +F EM   G+ P GVTF+++L ACSH GLV EG + F SM N Y
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G +P  EHY CMVD+L R G+L  A   I+ MP +    +W ALL AC +H+N ++  +A
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVA 606

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            ++L  L+P++  +YVLLSN+ +    + +A  VR+++    + K PG + IE +   + 
Sbjct: 607 SKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYV 666

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF-DVDEEEKETVVSYHSEKLAL 657
           F +  +SHPQ   I  ML+ +T K++ AGY   TV     DV++EEKE +V+ HSEKLA+
Sbjct: 667 FTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAI 726

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI+++    IRI KNLR+C DCH A K +S+I  R I+VRDA RFH FK G CSC D
Sbjct: 727 AFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGD 786

Query: 718 FW 719
           +W
Sbjct: 787 YW 788



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 267/529 (50%), Gaps = 53/529 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLFRSRILFSQI 68
            L LL +  +L Q LQI  Q++  G+++ +SS   ++  FF L    +     R LF+++
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAH----VRQLFNKV 72

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P++F++N L+RG+S +  P+ ++ LYT +     + P+NFT+ F +++ +RL   + G
Sbjct: 73  SKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVG 132

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H H I  G+  +LF+ +A++  Y  F     A KVF+    RD V +NT+I+G+++ 
Sbjct: 133 VLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN 192

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                ++ +F  M D  +  D+ T   + +A  EL + R+G     +  K    + S++ 
Sbjct: 193 SYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKK--GLHSDVY 250

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + T +I++Y+KC                                GK  + R LFDQ+DQ 
Sbjct: 251 VLTGLISLYSKC--------------------------------GKSCKGRILFDQIDQP 278

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           DL+S+ AMISGY+       A+ LF ++ + G   +  T+V ++   +    L   +   
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSR--- 335

Query: 369 QQYIENVVFGRNIFL----TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
              I+N+     I L    +TA+  +Y +   +  A  +F + P+  K+++ +N++ISG 
Sbjct: 336 --LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE--KSLASWNAMISGY 391

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
            Q+GL + +I++F+EM +  L P+ VT  ++L AC+  G +  GK     + +  ++  +
Sbjct: 392 TQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV 450

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
                +VD+ A+ G + EA  L   M  D N V W A++    LH + K
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGK 498



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQI----HGQIVHSGLNHHI-SSSQLISFFALSGCK 55
           M +L     ++ ++L +C  L  AL I    HG I    L  ++  S+ L+  +A  G  
Sbjct: 408 MPQLSPNPVTVTSILSACAQLG-ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCG-- 464

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             +  +R LF  + + N+  WN ++ GY      +EAL L+  ML  GI  P   TF  +
Sbjct: 465 -SIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGI-PPTGVTFLSI 522

Query: 116 LNSCARLSSFKSGCQI 131
           L +C+       G +I
Sbjct: 523 LYACSHSGLVSEGNEI 538


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/779 (33%), Positives = 415/779 (53%), Gaps = 110/779 (14%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHS--GLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           ++SLL L    ++  QA ++H  I+ +       +S++ + +++ L      L  +  +F
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGN----LAYAHHVF 63

Query: 66  SQIDNPNIFIWNTLMR-------------------------------GYSRSDSPQEALV 94
             I  PN+F WNT++                                GY+   S  +A+ 
Sbjct: 64  DHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVR 123

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           +Y  ML    ++ N  TF  +L  C++      G QI+  I+KFG   D+F+ + L+  Y
Sbjct: 124 VYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMY 183

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLING-------------YAQVKEPCPALW----- 196
           +  G I +A + F+    R++V  NT+I G             +  +KE     W     
Sbjct: 184 TKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMIT 243

Query: 197 -------------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
                        +FR+M+ +    D FTF ++ +AC  L     GKQ HA V +     
Sbjct: 244 GLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH-- 301

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N+ + +A+++MY+KC  +  AE V                                F 
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETV--------------------------------FK 329

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M Q++++SWTAM+ GY Q G   +A+++F +M+  G+ PD+ T+ +V+ +C  L +L+ 
Sbjct: 330 RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEE 389

Query: 364 GKRLHQQYIENVVFGRNIFLTT--AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G + H      +V G   F+T   A+I +Y KCGS + +  +F ++  N++    + +++
Sbjct: 390 GAQFH---CRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM--NIRDEVSWTALL 444

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
           +G AQ G    +I +F  M   GLKPDGVTF+ VL ACS  GLVE+G Q+FESM+  +GI
Sbjct: 445 AGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGI 504

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P ++H  C++DLL R GRL+EA   I +MP   + V W  LL++CR+H + +IG+ A  
Sbjct: 505 MPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAAD 564

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            L+ LEP + A YVLLS++ A   +W++  Q+R+ M D  ++K PG+S+I++ G +H F 
Sbjct: 565 SLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFS 624

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A  +S P   +I   L+ +  K+   GYVP+   V+ DV+E EK  ++++HSEKLA+AFG
Sbjct: 625 ADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFG 684

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI       IR+ KNLR+CGDCH A K +S+I +REI+VRDA+RFHLFK G CSC DFW
Sbjct: 685 LIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/738 (34%), Positives = 414/738 (56%), Gaps = 35/738 (4%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H +   +L++C    S +    +H  +  SG   ++   + L+S +   G       +R
Sbjct: 125 DHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE---NAR 181

Query: 63  ILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +F ++      ++  WN+++  Y +      A+ ++  M     + P+  +   VL +C
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A + ++  G Q+H + ++ GL  D+F+ NA++  Y+  G +  A+KVFE    +D+VS+N
Sbjct: 242 ASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWN 301

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM----------FSACTELNDPRI- 228
            ++ GY+Q+     AL LF K+++  I+ +  T+ A+          F A       R+ 
Sbjct: 302 AMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLC 361

Query: 229 GKQFHAVVYKNL--GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           G + + V   +L  GC  +  LL     + +A   ++N+ E               +++I
Sbjct: 362 GSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDEN-----DPGDDLMVINALI 416

Query: 287 SGYTREGKIERARQLFDQMDQRD--LVSWTAMISGYSQVGGFSQALELFGKMESLG--IH 342
             Y++    + AR +FD +  +D  +V+WT +I G +Q G  ++ALELF +M      + 
Sbjct: 417 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 476

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+  T+   L AC  LGAL FG+++H   + N      +F+   +IDMY+K G +D A  
Sbjct: 477 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 536

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + +    VS + S+++G   HG GE ++ +F EM+ +GL PDGVTFV VL ACSH 
Sbjct: 537 VFDNMHQR-NGVS-WTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHS 594

Query: 463 GLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           G+V++G  +F  M  ++G+ P  EHY CMVDLL+R GRLDEA  LI+ MP      +W A
Sbjct: 595 GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 654

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL+ACR++ N ++GE A  +LL+LE  +   Y LLSN+ A    W++  ++R LM ++GI
Sbjct: 655 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 714

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K PG S+++       F A   SHP +++I  +L+D+  ++K+ GYVP+    + DVD+
Sbjct: 715 KKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDD 774

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           EEK  ++S HSEKLALA+G++ +     IRITKNLR CGDCH AF  +S I   EI+VRD
Sbjct: 775 EEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRD 834

Query: 702 AIRFHLFKKGNCSCMDFW 719
           + RFH FK G+CSC  +W
Sbjct: 835 SSRFHHFKNGSCSCRGYW 852



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/538 (30%), Positives = 279/538 (51%), Gaps = 35/538 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS-FFALSGCKNGLFRSRILFSQIDNPN 72
           L   CKSL  A  IH Q++  GL H    + +IS +   +     L   R L     +  
Sbjct: 35  LFHQCKSLASAELIHQQLLVQGLPH--DPTHIISMYLTFNSPAKALSVLRRLHPS--SHT 90

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +F WN L+R        ++ L LY  M   G   P+++TFPFVL +C  + SF+ G  +H
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW-RPDHYTFPFVLKACGEIPSFRCGASVH 149

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVK 189
             +   G E+++F+ N L+  Y   G   NA +VF+    R   DLVS+N+++  Y Q  
Sbjct: 150 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 190 EPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           +   A+ +F +M +D  I+PDA + V +  AC  +     GKQ H    ++   +  ++ 
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS--GLFEDVF 267

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  AV++MYAKCG+M  A +VF  M + K   +W++M++GY++ G+ + A  LF+++ + 
Sbjct: 268 VGNAVVDMYAKCGMMEEANKVFERMKV-KDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 326

Query: 309 ----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
               ++V+W+A+I+GY+Q G   +AL++F +M   G  P+ VT+V++L  C   G L  G
Sbjct: 327 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHG 386

Query: 365 KRLHQQYIENVVF------GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           K  H   I+ ++       G ++ +  A+IDMY+KC S   A ++F  IP   ++V  + 
Sbjct: 387 KETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 446

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPD------GVTFVTVLCACSHGGLVEEGKQFF 472
            +I G AQHG    ++ +F +M    L+PD        T    L AC+  G +  G+Q  
Sbjct: 447 VLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGRQIH 502

Query: 473 ESMLNYGIKPQMEHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             +L    +  M     C++D+ ++ G +D A  +  +M +  N V W +L+    +H
Sbjct: 503 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMH 559


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/655 (37%), Positives = 363/655 (55%), Gaps = 56/655 (8%)

Query: 106 SPNNFTFPF--VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           SP    F    VL++   L + ++   +H  II   L ++  +   L+  Y+    +  A
Sbjct: 38  SPKETAFMLGQVLDTYPDLKTLRT---VHSRIISEDLRYNSSLGVKLMRAYASLKDVATA 94

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            KVF+    R+++  N +I  Y         + +F  M    ++PD +TF  +  AC+  
Sbjct: 95  RKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCS 154

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
            +  IGK+ H    K +G + S + +   +++MY KCG ++ A  V   M   +   +W+
Sbjct: 155 GNIVIGKKIHGSATK-VG-LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWN 211

Query: 284 SMISGYTREGKIERA-------------------------------------RQLFDQMD 306
           S+++GY +  + + A                                     + +F +M 
Sbjct: 212 SLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 271

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++ LVSW  MI  Y +     +A+EL+  ME+ G  PD V++ +VL AC    AL  GK+
Sbjct: 272 KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKK 331

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT--VSLFNSIISGL 424
           +H  YIE      N+ L  A+IDMYAKCG +D A  VF    +N+K+  V  + ++IS  
Sbjct: 332 IHG-YIERKKLIPNLLLENALIDMYAKCGCLDRARDVF----ENMKSRDVVSWTAMISAY 386

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
              G G  ++A+F +M+  GL PD + FVT L ACSH GL+EEG+  F+ M + Y I P+
Sbjct: 387 GFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 446

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EH  CMVDLL R G++ EAY  IQ MP + N  +W ALL ACR+H N  IG +A  KL 
Sbjct: 447 LEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLF 506

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            L P+   +YVLLSN+ A+  RWEE   +R +M   G++K PG S +E N  +H FL   
Sbjct: 507 QLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGD 566

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +SHPQ+ EI   L  +  K+K  GYVP++   + DV+EE+KET ++ HSEKLA+ F L+N
Sbjct: 567 RSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMN 626

Query: 664 SRSKET---IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           +  +++   IRITKNLRICGDCH+A KL+S+I  REI++RD  RFH+F+ G CSC
Sbjct: 627 TEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 39/430 (9%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           +L++   LK    +H +I+   L ++  SS  +           +  +R +F +I   N+
Sbjct: 49  VLDTYPDLKTLRTVHSRIISEDLRYN--SSLGVKLMRAYASLKDVATARKVFDEIPERNV 106

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            I N ++R Y  +   +E + ++ +M S   V P+++TFP VL +C+   +   G +IH 
Sbjct: 107 IIINVMIRSYVNNGFYREGIQVFGTMCSCH-VKPDHYTFPCVLKACSCSGNIVIGKKIHG 165

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
              K GL   LF+ N L+  Y   G+++ A  V +    RD+VS+N+L+ GYAQ +    
Sbjct: 166 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDD 225

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP----------RIGKQFHAVVYKNLGCV 243
           AL + R+M+   I  DA T  ++  A +               ++GK+        +G  
Sbjct: 226 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 285

Query: 244 GSNMLLKTAVINMYAKC---GLMNMAERVFSTMGMSKSTAAWS----------------- 283
             N +   AV  +Y+     G    A  + S +     T+A S                 
Sbjct: 286 MKNAMPVEAV-ELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN 344

Query: 284 -----SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
                ++I  Y + G ++RAR +F+ M  RD+VSWTAMIS Y   G    A+ LF KM+ 
Sbjct: 345 LLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQD 404

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+ PD +  V  L AC   G L+ G+   +   ++      +     ++D+  + G + 
Sbjct: 405 SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 464

Query: 399 TALSVFYKIP 408
            A     ++P
Sbjct: 465 EAYKFIQEMP 474



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFR 60
           +R V+  +SL+A     +    AL++  ++    ++H   + + L+   + +  +N ++ 
Sbjct: 204 RRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYV 263

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
             + F ++   ++  WN ++  Y ++  P EA+ LY+ M + G   P+  +   VL +C 
Sbjct: 264 KDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGF-EPDAVSITSVLPACG 321

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
             S+   G +IH +I +  L  +L + NALI  Y+  G ++ A  VFE   +RD+VS+  
Sbjct: 322 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTA 381

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVY 237
           +I+ Y      C A+ LF KMQDS + PD+  FV   +AC+    L + R   +     Y
Sbjct: 382 MISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY 441

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           K    +   +     ++++  + G +  A +    M M  +   W +++
Sbjct: 442 K----ITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALL 486


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/697 (36%), Positives = 387/697 (55%), Gaps = 58/697 (8%)

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGY-------------------------------SRSD 87
           F SR LFSQI+ P IF  N+++ GY                               S+S 
Sbjct: 181 FASR-LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 239

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
             +EAL L   M  KG V  ++ T+   L +CARL S   G Q+H  +I+   + D ++ 
Sbjct: 240 RVREALGLVVEMHRKG-VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 298

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           +ALI  Y+  G    A +VF     R+ VS+  LI G  Q +    ++ LF +M+   + 
Sbjct: 299 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 358

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN--MLLKTAVINMYAKCGLMNM 265
            D F    + S C    D  +G+Q H++  K+    G N  +++  ++I++YAKCG +  
Sbjct: 359 IDQFALATLISGCFNRMDLCLGRQLHSLCLKS----GHNRAIVVSNSLISLYAKCGDLQN 414

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           AE VFS+M   +   +W+SMI+ Y++ G I +AR+ FD M  R+ ++W AM+  Y Q G 
Sbjct: 415 AEFVFSSMS-ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGA 473

Query: 326 FSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
               L+++  M S   + PD VT V + R C  +GA   G ++    ++  +   N+ + 
Sbjct: 474 EEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVA 532

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A I MY+KCG I  A  +F  +  N K V  +N++I+G +QHG+G+ +   F +M   G
Sbjct: 533 NAAITMYSKCGRISEAQKLFDLL--NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKG 590

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            KPD +++V VL  CSH GLV+EGK +F+ M   +GI P +EH+ CMVDLL R G L EA
Sbjct: 591 AKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEA 650

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-PDHGAHYVLLSNMLAE 562
             LI  MP    + +W ALL+AC++H N ++ E+A + + +L+ PD G+ Y+LL+ + ++
Sbjct: 651 KDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGS-YMLLAKIYSD 709

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             + +++ QVRKLM D GI+K PG+S++E    +H F A   SHPQ   I   + ++  K
Sbjct: 710 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEK 769

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +   GYV           E  +  +  +HSEKLA+AFG+++  +   I I KNLRICGDC
Sbjct: 770 IAHLGYVRT---------ESPRSEI--HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDC 818

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H   KL+S +  RE ++RD +RFH FK G+CSC D+W
Sbjct: 819 HTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 203/418 (48%), Gaps = 14/418 (3%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR- 173
            L SC    +      +H  ++  GL   +F++N L+H Y   G +++A ++    +   
Sbjct: 26  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 85

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQD------SCIQPDAFTFVAMFSACTELNDPR 227
           +++++N ++NGYA+      A  LF +M        + +  D       + +C  L    
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRE 145

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           +  Q   + +K       +  ++TA+++M+ +CG ++ A R+FS +    +    +SM++
Sbjct: 146 LAPQLLGLFWKFD--FWGDPDVETALVDMFVRCGYVDFASRLFSQI-ERPTIFCRNSMLA 202

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           GY +   I+ A + F+ M +RD+VSW  MI+  SQ G   +AL L  +M   G+  D  T
Sbjct: 203 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 262

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
             + L AC  L +L +GK+LH + I ++    + ++ +A+I++YAKCGS   A  VF  +
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSL 321

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
            ++  +VS +  +I G  Q+     S+ +F +M    +  D     T++  C +   +  
Sbjct: 322 -QDRNSVS-WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCL 379

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G+Q     L  G    +     ++ L A+ G L  A  +  SM  + + V W +++ A
Sbjct: 380 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 436



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 139/632 (21%), Positives = 262/632 (41%), Gaps = 121/632 (19%)

Query: 5   VLEHSSLLAL---LESCKS---LKQALQIHGQIVHSGLNHHI--SSSQLISFFALSGCKN 56
           +L H+   AL   L SC S   L  A  +HG++V  GL   +   ++ L ++ +     +
Sbjct: 14  LLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSD 73

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
                R+L + I  PN+   N +M GY++  S  +A  L+  M  + + S N        
Sbjct: 74  A---RRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSR 130

Query: 117 NSCARLSSFKSGCQ-----------------------------IHCHIIKFGLEF----- 142
            + + +S    GC+                             + C  + F         
Sbjct: 131 PAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 190

Query: 143 --DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
              +F RN+++  Y+    I++A + FE    RD+VS+N +I   +Q      AL L  +
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 250

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M    ++ D+ T+ +  +AC  L     GKQ HA V ++L  +  +  + +A+I +YAKC
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI--DPYVASALIELYAKC 308

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G    A+RVF+++   +++ +W+ +I G                                
Sbjct: 309 GSFKEAKRVFNSL-QDRNSVSWTVLIGGSL------------------------------ 337

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            Q   FS+++ELF +M +  +  D+  +  ++  C     L  G++LH   +++    R 
Sbjct: 338 -QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS-GHNRA 395

Query: 381 IFLTTAVIDMYAKCGSIDTA------------------LSVFYKIPKNLKTVSLF----- 417
           I ++ ++I +YAKCG +  A                  ++ + +I   +K    F     
Sbjct: 396 IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMAT 455

Query: 418 ------NSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
                 N+++    QHG  E  + ++  M     + PD VT+VT+   C+  G  + G Q
Sbjct: 456 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 515

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
                +  G+   +      + + ++ GR+ EA  L   +    + V W A++     H 
Sbjct: 516 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLN-GKDVVSWNAMITGYSQH- 573

Query: 531 NAKIGEIAGQKLLDL-----EPDHGAHYVLLS 557
              +G+ A +   D+     +PD+ ++  +LS
Sbjct: 574 --GMGKQAAKTFDDMLSKGAKPDYISYVAVLS 603



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 166/345 (48%), Gaps = 16/345 (4%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFR 60
           R ++  +SL++L   C  L+ A     + V S ++    +S + +I+ ++  G    + +
Sbjct: 394 RAIVVSNSLISLYAKCGDLQNA-----EFVFSSMSERDIVSWTSMITAYSQIG---NIIK 445

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F  +   N   WN ++  Y +  + ++ L +Y++MLS+  V+P+  T+  +   CA
Sbjct: 446 AREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 505

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            + + K G QI  H +K GL  ++ + NA I  YS  G I+ A K+F+    +D+VS+N 
Sbjct: 506 DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNA 565

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GY+Q      A   F  M     +PD  ++VA+ S C+     + GK +  ++ +  
Sbjct: 566 MITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVH 625

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---- 296
           G +   +   + ++++  + G +  A+ +   M M  +   W +++S     G  E    
Sbjct: 626 G-ISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAEL 684

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            A+ +F ++D  D  S+  +   YS  G    + ++   M   GI
Sbjct: 685 AAKHVF-ELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 728


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/659 (36%), Positives = 381/659 (57%), Gaps = 22/659 (3%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF  +   ++  WN ++   S+S   +EAL +   M SKG V  ++ T+   L +CARLS
Sbjct: 226 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTSSLTACARLS 284

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           S + G Q+H  +I+     D ++ +AL+  Y+  G    A  VF     R+ V++  LI+
Sbjct: 285 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 344

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+ Q      ++ LF +M+   +  D F    + S C    D  +G+Q H++  K+ G +
Sbjct: 345 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKS-GQI 403

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            + +++  ++I+MYAKC  +  AE +F  M   K   +W+SMI+ Y++ G + +AR+ FD
Sbjct: 404 QA-VVVSNSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITAYSQVGNVAKAREFFD 461

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALD 362
            M ++++++W AM+  Y Q G     L ++  M S   + PD VT V + + C  LGA  
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 521

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G ++  + ++ V    +  +  AVI MY+KCG I  A  VF  +  N+K +  +N++I+
Sbjct: 522 LGDQIIGRTVK-VGLIIDTSVANAVITMYSKCGRILEARKVFDFL--NVKDIVSWNAMIT 578

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           G +QHG+G+ +I +F ++   G KPD +++V VL  CSH GLV+EGK +F+ M   + I 
Sbjct: 579 GYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS 638

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P +EH+ CMVDLL R G L EA  LI  MP    + +W ALL+AC++H N ++ E+A + 
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKH 698

Query: 542 LLDLE-PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           + +L+ PD G+ Y+L++ + A+  + +++ Q+RKLM D GI+K PG+S++E +  +H F 
Sbjct: 699 VFELDSPDSGS-YMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFK 757

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A   SHPQ   I   L ++  K+   GYV          D    E    +HSEKLA+AFG
Sbjct: 758 ADDVSHPQVLAIRKKLDELMEKIARLGYVRT--------DSTRSEI---HHSEKLAVAFG 806

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+   +   I I KNLRICGDCH   KL+S +  RE ++RDA+RFH F  G+CSC D+W
Sbjct: 807 LMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           ++   N +++ Y+  G +++A ++F    ARD+ S+NTL++GY Q ++   +L  F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 203 DSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            S    P+AFT      +C  L    +  Q  A+V K      S   +  A+++M+ +CG
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE--VAAALVDMFVRCG 187

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            +++A R+F  +    +    +SM++GY +   ++ A +LFD M +RD+VSW  M+S  S
Sbjct: 188 AVDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G   +AL++   M+S G+  D  T  + L AC  L +L +GK+LH Q I N+    + 
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPH-IDP 305

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++ +A++++YAK G    A  VF  +    +    +  +ISG  Q+G    S+ +F +M 
Sbjct: 306 YVASALVELYAKSGCFKEAKGVFNSLHD--RNNVAWTVLISGFLQYGCFTESVELFNQMR 363

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
              +  D     T++  C     +  G+Q     L  G    +     ++ + A+   L 
Sbjct: 364 AELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQ 423

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
            A  + + M  + + V W +++ A      +++G +A  +
Sbjct: 424 SAEAIFRFMN-EKDIVSWTSMITA-----YSQVGNVAKAR 457



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/538 (23%), Positives = 243/538 (45%), Gaps = 61/538 (11%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNTLM GY +S     +L  + SM   G   PN FT    + SC  L 
Sbjct: 93  LFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALG 152

Query: 124 SFKSGCQIHCHIIKFGLEFD-------------------------------LFIRNALIH 152
                 Q+   + KF  + D                               +F RN+++ 
Sbjct: 153 WHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLA 212

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y     +++A ++F+    RD+VS+N +++  +Q      AL +   MQ   ++ D+ T
Sbjct: 213 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 272

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +  +AC  L+  R GKQ HA V +NL  +  +  + +A++ +YAK G    A+ VF++
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPHI--DPYVASALVELYAKSGCFKEAKGVFNS 330

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQ 328
           +   ++  AW+ +ISG+ + G    + +LF+QM       D  +   +ISG         
Sbjct: 331 L-HDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS----RM 385

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV---VFGRNIFLTT 385
            L L  ++ SL +   ++  V V  + + +    + K  + Q  E +   +  ++I   T
Sbjct: 386 DLCLGRQLHSLCLKSGQIQAVVVSNSLISM----YAKCDNLQSAEAIFRFMNEKDIVSWT 441

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMG 444
           ++I  Y++ G++  A   F  + +  K V  +N+++    QHG  E  + +++ M     
Sbjct: 442 SMITAYSQVGNVAKAREFFDGMSE--KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEY 499

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           ++PD VT+VT+   C+  G  + G Q     +  G+         ++ + ++ GR+ EA 
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEAR 559

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-----EPDHGAHYVLLS 557
            +   +    + V W A++     H    +G+ A +   D+     +PD+ ++  +LS
Sbjct: 560 KVFDFLNVK-DIVSWNAMITGYSQH---GMGKQAIEIFDDILKRGAKPDYISYVAVLS 613



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 161/341 (47%), Gaps = 12/341 (3%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           V+  +SL+++   C +L+ A  I   +    +   +S + +I+ ++  G    + ++R  
Sbjct: 406 VVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI---VSWTSMITAYSQVG---NVAKAREF 459

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +   N+  WN ++  Y +  + ++ L +Y  MLS+  V P+  T+  +   CA L +
Sbjct: 460 FDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGA 519

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            K G QI    +K GL  D  + NA+I  YS  G I  A KVF+    +D+VS+N +I G
Sbjct: 520 NKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITG 579

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y+Q      A+ +F  +     +PD  ++VA+ S C+     + GK F+  + K    + 
Sbjct: 580 YSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGK-FYFDMMKRAHNIS 638

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQ 300
             +   + ++++  + G +  A+ +   M M  +   W +++S     G  E     A+ 
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKH 698

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +F ++D  D  S+  M   Y+  G    + ++   M   GI
Sbjct: 699 VF-ELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
           G++ ++G+         +L A +  GAL   +RL    I +     N+     +++ YAK
Sbjct: 28  GRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAH----PNVITHNVMLNGYAK 83

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK-PDGVTF 452
            G +  A+ +F ++P   + V+ +N+++SG  Q      S+  F  M   G   P+  T 
Sbjct: 84  LGRLSDAVELFGRMPA--RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTL 141

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
              + +C   G      Q    +  +  +   E    +VD+  R G +D A
Sbjct: 142 ACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLA 192


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 378/662 (57%), Gaps = 43/662 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F  +   +  +WNT++ G+SR+   ++++ ++  ML  G+ S ++ T   VL + A
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGL-SFDSTTLATVLTAVA 225

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L  ++ G  I C   K GL  D+++   LI  YS  G       +F+     DL+SYN 
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNA 285

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY    E   A+ LFR++  S  + ++ T V +       N  ++ +          
Sbjct: 286 MISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQ------- 338

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                N+ LK  +I                  +  S STA    + + Y R  +++ ARQ
Sbjct: 339 -----NLSLKIGII------------------LQPSVSTA----LTTVYCRLNEVQFARQ 371

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LFD+  ++ L SW AMISGY+Q G   +A+ LF +M    + P+ VT+ ++L AC  LGA
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGA 430

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF-YKIPKNLKTVSLFNS 419
           L  GK +H   I++     N++++TA++DMYAKCGSI  A  +F   + KN+ T   +N+
Sbjct: 431 LSIGKWVHG-LIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVT---WNA 486

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I+G   HG G+ ++ +F EM   G+ P GVTF+++L ACSH GLV EG + F SM N Y
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G +P  EHY CMVD+L R G+L  A   I+ MP +    +W ALL AC +H+N ++  +A
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVA 606

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            ++L  L+P++  +YVLLSN+ +    + +A  VR+++    + K PG + IE +   + 
Sbjct: 607 SKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYV 666

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF-DVDEEEKETVVSYHSEKLAL 657
           F +  +SHPQ   I  ML+ +T K++ AGY   TV     DV++EEKE +V+ HSEKLA+
Sbjct: 667 FTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAI 726

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI+++    IRI KNLR+C DCH A K +S+I  R I+VRDA RFH FK G CSC D
Sbjct: 727 AFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGD 786

Query: 718 FW 719
           +W
Sbjct: 787 YW 788



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 268/529 (50%), Gaps = 53/529 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLFRSRILFSQI 68
            L LL +  +L Q LQI  Q++  G+++ +SS   ++  FF L    +     R LF+++
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAH----VRQLFNKV 72

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P++F++N L+RG+S +  P+ ++ LYT +  K  + P+NFT+ F +++ +RL   + G
Sbjct: 73  SKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVG 132

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H H I  G+  +LF+ +A++  Y  F     A KVF+    RD V +NT+I+G+++ 
Sbjct: 133 VLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN 192

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                ++ +F  M D  +  D+ T   + +A  EL + R+G     +  K    + S++ 
Sbjct: 193 SYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKK--GLHSDVY 250

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + T +I++Y+KC                                GK  + R LFDQ+DQ 
Sbjct: 251 VLTGLISLYSKC--------------------------------GKSCKGRILFDQIDQP 278

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           DL+S+ AMISGY+       A+ LF ++ + G   +  T+V ++   +    L   +   
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSR--- 335

Query: 369 QQYIENVVFGRNIFL----TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
              I+N+     I L    +TA+  +Y +   +  A  +F + P+  K+++ +N++ISG 
Sbjct: 336 --LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE--KSLASWNAMISGY 391

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
            Q+GL + +I++F+EM +  L P+ VT  ++L AC+  G +  GK     + +  ++  +
Sbjct: 392 TQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV 450

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
                +VD+ A+ G + EA  L   M  D N V W A++    LH + K
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGK 498



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQI----HGQIVHSGLNHHI-SSSQLISFFALSGCK 55
           M +L     ++ ++L +C  L  AL I    HG I    L  ++  S+ L+  +A  G  
Sbjct: 408 MPQLSPNPVTVTSILSACAQLG-ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCG-- 464

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             +  +R LF  + + N+  WN ++ GY      +EAL L+  ML  GI  P   TF  +
Sbjct: 465 -SIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGI-PPTGVTFLSI 522

Query: 116 LNSCARLSSFKSGCQI 131
           L +C+       G +I
Sbjct: 523 LYACSHSGLVSEGNEI 538


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 365/621 (58%), Gaps = 48/621 (7%)

Query: 106 SPNNFTFPF-VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI---FGYIN 161
           S +N T P  +L  C  L   K   Q+    IK  L  DL +    I+F S+      + 
Sbjct: 16  SNSNTTHPLSLLPKCTSLRELK---QLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQ 72

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +AH +F+     D+V +NT+  GYA+   P  A  LF ++  S + PD +TF ++  AC 
Sbjct: 73  HAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACA 132

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
                  G+Q H +  K                                  +G+S++   
Sbjct: 133 SCKALEEGRQLHCLAIK----------------------------------LGLSENVYV 158

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             ++I+ YT   +++ AR++FD++ +  +V++ AMI+GY++    ++AL LF ++++  +
Sbjct: 159 CPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNL 218

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P +VTM++VL +C  LGALD GK +H+ Y++   F R + + TA+IDMYAKCGS+D A+
Sbjct: 219 KPTDVTMLSVLSSCALLGALDLGKWMHE-YVKKNGFNRFVKVDTALIDMYAKCGSLDDAV 277

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF  +   ++    ++++I   A HG G  ++++F+EM   G +PD +TF+ +L ACSH
Sbjct: 278 CVFENMA--VRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSH 335

Query: 462 GGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            GLVEEG ++F  M + YG+ P ++HYGCMVDLL R GRL+EAY  I  +P     ++WR
Sbjct: 336 TGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWR 395

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            LL+AC  H N ++G+   +++ +L+  HG  Y++LSN+ A   RWE+   VRKLM++ G
Sbjct: 396 TLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERG 455

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF--D 638
           + K PG S +E N  +H F +    H  + ++   L ++  +LK  GYVPNT  +VF  D
Sbjct: 456 VVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNT-SLVFHAD 514

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           +++EEKE  + YHSEKLA+ FGL+N+    TIR+ KNLR+CGDCH A KL+S I+ R+I+
Sbjct: 515 MEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQII 574

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           +RD  RFH FK G CSC D+W
Sbjct: 575 LRDVQRFHHFKDGKCSCEDYW 595



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 218/436 (50%), Gaps = 44/436 (10%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL  C SL++  Q+    + + L+  +S  ++ I+F +L+     +  +  LF QI  
Sbjct: 24  LSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQ 83

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P+I ++NT+ RGY+R+D+P  A  L+T +L  G+  P+++TFP +L +CA   + + G Q
Sbjct: 84  PDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLF-PDDYTFPSLLKACASCKALEEGRQ 142

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +HC  IK GL  ++++   LI+ Y+    ++ A +VF+      +V+YN +I GYA+   
Sbjct: 143 LHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL LFR++Q   ++P   T +++ S+C  L    +GK  H  V KN    G N  +K
Sbjct: 203 PNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKN----GFNRFVK 258

Query: 251 --TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
             TA+I+MYAKCG ++ A  VF  M + + T AWS+MI  Y                   
Sbjct: 259 VDTALIDMYAKCGSLDDAVCVFENMAV-RDTQAWSAMIMAYA------------------ 299

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                   I G+       +A+ LF +M   G  PDE+T + +L AC   G ++ G    
Sbjct: 300 --------IHGHGL-----KAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYF 346

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
               +       I     ++D+  + G ++ A      +P    T  L+ +++S    HG
Sbjct: 347 YGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIR-PTPILWRTLLSACGSHG 405

Query: 429 ---LGETSIAVFREME 441
              LG+  I    E++
Sbjct: 406 NVELGKRVIEQIFELD 421



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 148/301 (49%), Gaps = 6/301 (1%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           SLL    SCK+L++  Q+H   +  GL+ ++     LI+ +  + C N +  +R +F +I
Sbjct: 126 SLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMY--TAC-NEMDCARRVFDKI 182

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P +  +N ++ GY+R   P EAL L+  + ++ +  P + T   VL+SCA L +   G
Sbjct: 183 WEPCVVTYNAMITGYARGSRPNEALSLFRELQARNL-KPTDVTMLSVLSSCALLGALDLG 241

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H ++ K G    + +  ALI  Y+  G +++A  VFE    RD  +++ +I  YA  
Sbjct: 242 KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ LF++M+ +  +PD  TF+ +  AC+       G ++   +    G +   + 
Sbjct: 302 GHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVI-PGIK 360

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
               ++++  + G +  A      + +  +   W +++S     G +E  +++ +Q+ + 
Sbjct: 361 HYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFEL 420

Query: 309 D 309
           D
Sbjct: 421 D 421


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/568 (39%), Positives = 350/568 (61%), Gaps = 11/568 (1%)

Query: 26  QIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           ++H   + SGL N H + S+++  +A+   +  L  +  +F QI+ P  F+WN L+RG +
Sbjct: 6   RLHAYYIVSGLYNCHYAMSKVLRSYAI--LQPDLVFAHKVFDQIEAPTTFLWNILIRGLA 63

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           +SD+P +A+  Y      G+V P+N TFPF+L +CAR+++   G Q+H HI K GL  D+
Sbjct: 64  QSDAPADAIAFYKKAQGGGMV-PDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDI 122

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N+LIH Y+  G +  A  VF+  + +D+VS+N+LI GY+Q       L LF+ MQ+ 
Sbjct: 123 FVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNE 182

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            ++ D  T + + SACT L D  +    + V Y    C+  ++ L   +++ + + G + 
Sbjct: 183 GVKADKVTMIKVVSACTRLGDYSMAD--YMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            AE+VF  M + ++    ++MI+ Y +   I  AR++FDQ+ ++DL+SW++MISGYSQ  
Sbjct: 241 SAEKVFFNMKV-RNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQAN 299

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
            FS ALE+F +M+   + PD + + +V+ +C  LGALD GK +H+ Y+       +  + 
Sbjct: 300 HFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHE-YVRRNNIKADTIME 358

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            ++IDMY KCGS   AL VF ++ K   T+S +NSII GLA +G  + S+ +F+ M   G
Sbjct: 359 NSLIDMYMKCGSAKEALQVFKEM-KEKDTLS-WNSIIIGLANNGFEKESLNLFQAMLTEG 416

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            +P+GVTF+ VL AC++  LVEEG   FESM   Y ++PQM+HYGC+VDLL R G+L++A
Sbjct: 417 FRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKA 476

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
              I  MP D + V+WR LL +C  H +  I EI  +KL +LEP +  +Y LLSN  A  
Sbjct: 477 LRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASA 536

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIE 591
           +RW EA  VR+ M D+ ++K PG S +E
Sbjct: 537 HRWSEAMNVRQCMADTDVRKSPGCSAVE 564


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/659 (36%), Positives = 381/659 (57%), Gaps = 22/659 (3%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF  +   ++  WN ++   S+S   +EAL +   M SKG V  ++ T+   L +CARLS
Sbjct: 246 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTSSLTACARLS 304

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           S + G Q+H  +I+     D ++ +AL+  Y+  G    A  VF     R+ V++  LI+
Sbjct: 305 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 364

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+ Q      ++ LF +M+   +  D F    + S C    D  +G+Q H++  K+ G +
Sbjct: 365 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKS-GQI 423

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            + +++  ++I+MYAKC  +  AE +F  M   K   +W+SMI+ Y++ G + +AR+ FD
Sbjct: 424 QA-VVVSNSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITAYSQVGNVAKAREFFD 481

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALD 362
            M ++++++W AM+  Y Q G     L ++  M S   + PD VT V + + C  LGA  
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 541

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G ++  + ++ V    +  +  AVI MY+KCG I  A  VF  +  N+K +  +N++I+
Sbjct: 542 LGDQIIGRTVK-VGLIIDTSVANAVITMYSKCGRILEARKVFDFL--NVKDIVSWNAMIT 598

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           G +QHG+G+ +I +F ++   G KPD +++V VL  CSH GLV+EGK +F+ M   + I 
Sbjct: 599 GYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS 658

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P +EH+ CMVDLL R G L EA  LI  MP    + +W ALL+AC++H N ++ E+A + 
Sbjct: 659 PGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKH 718

Query: 542 LLDLE-PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           + +L+ PD G+ Y+L++ + A+  + +++ Q+RKLM D GI+K PG+S++E +  +H F 
Sbjct: 719 VFELDSPDSGS-YMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFK 777

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A   SHPQ   I   L ++  K+   GYV          D    E    +HSEKLA+AFG
Sbjct: 778 ADDVSHPQVLAIRKKLDELMEKIARLGYVRT--------DSTRSEI---HHSEKLAVAFG 826

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+   +   I I KNLRICGDCH   KL+S +  RE ++RDA+RFH F  G+CSC D+W
Sbjct: 827 LMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 199/400 (49%), Gaps = 13/400 (3%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           ++   N +++ Y+  G +++A ++F    ARD+ S+NTL++GY Q ++   +L  F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 203 DSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            S    P+AFT      +C  L    +  Q  A+V K      S   +  A+++M+ +CG
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE--VAAALVDMFVRCG 207

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            +++A R+F  +    +    +SM++GY +   ++ A +LFD M +RD+VSW  M+S  S
Sbjct: 208 AVDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G   +AL++   M+S G+  D  T  + L AC  L +L +GK+LH Q I N+    + 
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPH-IDP 325

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++ +A++++YAK G    A  VF  +    +    +  +ISG  Q+G    S+ +F +M 
Sbjct: 326 YVASALVELYAKSGCFKEAKGVFNSLHD--RNNVAWTVLISGFLQYGCFTESVELFNQMR 383

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
              +  D     T++  C     +  G+Q     L  G    +     ++ + A+   L 
Sbjct: 384 AELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQ 443

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
            A  + + M  + + V W +++ A      +++G +A  +
Sbjct: 444 SAEAIFRFMN-EKDIVSWTSMITA-----YSQVGNVAKAR 477



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 127/538 (23%), Positives = 243/538 (45%), Gaps = 61/538 (11%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNTLM GY +S     +L  + SM   G   PN FT    + SC  L 
Sbjct: 113 LFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALG 172

Query: 124 SFKSGCQIHCHIIKFGLEFD-------------------------------LFIRNALIH 152
                 Q+   + KF  + D                               +F RN+++ 
Sbjct: 173 WHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLA 232

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y     +++A ++F+    RD+VS+N +++  +Q      AL +   MQ   ++ D+ T
Sbjct: 233 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 292

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +  +AC  L+  R GKQ HA V +NL  +  +  + +A++ +YAK G    A+ VF++
Sbjct: 293 YTSSLTACARLSSLRWGKQLHAQVIRNLPHI--DPYVASALVELYAKSGCFKEAKGVFNS 350

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQ 328
           +   ++  AW+ +ISG+ + G    + +LF+QM       D  +   +ISG         
Sbjct: 351 L-HDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS----RM 405

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV---VFGRNIFLTT 385
            L L  ++ SL +   ++  V V  + + +    + K  + Q  E +   +  ++I   T
Sbjct: 406 DLCLGRQLHSLCLKSGQIQAVVVSNSLISM----YAKCDNLQSAEAIFRFMNEKDIVSWT 461

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMG 444
           ++I  Y++ G++  A   F  + +  K V  +N+++    QHG  E  + +++ M     
Sbjct: 462 SMITAYSQVGNVAKAREFFDGMSE--KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEY 519

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           ++PD VT+VT+   C+  G  + G Q     +  G+         ++ + ++ GR+ EA 
Sbjct: 520 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEAR 579

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-----EPDHGAHYVLLS 557
            +   +    + V W A++     H    +G+ A +   D+     +PD+ ++  +LS
Sbjct: 580 KVFDFLNVK-DIVSWNAMITGYSQH---GMGKQAIEIFDDILKRGAKPDYISYVAVLS 633



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 161/341 (47%), Gaps = 12/341 (3%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRIL 64
           V+  +SL+++   C +L+ A  I   +    +   +S + +I+ ++  G    + ++R  
Sbjct: 426 VVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI---VSWTSMITAYSQVG---NVAKAREF 479

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  +   N+  WN ++  Y +  + ++ L +Y  MLS+  V P+  T+  +   CA L +
Sbjct: 480 FDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGA 539

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            K G QI    +K GL  D  + NA+I  YS  G I  A KVF+    +D+VS+N +I G
Sbjct: 540 NKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITG 599

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y+Q      A+ +F  +     +PD  ++VA+ S C+     + GK F+  + K    + 
Sbjct: 600 YSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGK-FYFDMMKRAHNIS 658

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQ 300
             +   + ++++  + G +  A+ +   M M  +   W +++S     G  E     A+ 
Sbjct: 659 PGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKH 718

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +F ++D  D  S+  M   Y+  G    + ++   M   GI
Sbjct: 719 VF-ELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 758



 Score = 43.5 bits (101), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
           G++ ++G+         +L A +  GAL   +RL    I +     N+     +++ YAK
Sbjct: 48  GRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAH----PNVITHNVMLNGYAK 103

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK-PDGVTF 452
            G +  A+ +F ++P   + V+ +N+++SG  Q      S+  F  M   G   P+  T 
Sbjct: 104 LGRLSDAVELFGRMPA--RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTL 161

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
              + +C   G      Q    +  +  +   E    +VD+  R G +D A
Sbjct: 162 ACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLA 212


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/681 (35%), Positives = 388/681 (56%), Gaps = 26/681 (3%)

Query: 42  SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           +S L+ +    G  + L     LF  +   ++  WN ++   S+S   +EAL +   M S
Sbjct: 208 NSMLVGYVKTYGVDHALE----LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 263

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           KG V  ++ T+   L +CARLSS + G Q+H  +I+     D ++ +AL+  Y+  G   
Sbjct: 264 KG-VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFK 322

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A  VF     R+ V++  LI G+ Q      ++ LF +M+   +  D F    + S C 
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCC 382

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
              D  +G+Q H++  K+ G + + +++  ++I+MYAKC  +  AE +F  M   K   +
Sbjct: 383 SRMDLCLGRQLHSLCLKS-GQIQA-VVVSNSLISMYAKCDNLQSAESIFRFMN-EKDIVS 439

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES-LG 340
           W+SMI+ +++ G I +AR+ FD M  +++++W AM+  Y Q G     L ++  M S   
Sbjct: 440 WTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKD 499

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PD VT V + + C  LGA   G ++  + ++ V    +  +  AVI MY+KCG I  A
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVK-VGLILDTSVANAVITMYSKCGRILEA 558

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             VF  +  N+K +  +N++I+G +QHG+G+ +I +F ++   G KPD +++V VL  CS
Sbjct: 559 RKVFDFL--NVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 616

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLV+EGK +F+ M   + I P +EH+ CMVDLL R G L EA  LI  MP    + +W
Sbjct: 617 HSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVW 676

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLE-PDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
            ALL+AC++H N ++ E+A + + +L+ PD G+ Y+L++ + A+  + +++ Q+RKLM D
Sbjct: 677 GALLSACKIHGNNELAELAAKHVFELDSPDSGS-YMLMAKIYADAGKSDDSAQIRKLMRD 735

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            GI+K PG+S++E N  +H F A   SHPQ   I   L ++  K+   GYV         
Sbjct: 736 KGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRT------- 788

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
            D    E    +HSEKLA+AFGL++  +   I I KNLRICGDCH   KL+S +  RE +
Sbjct: 789 -DSPRSEI---HHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFV 844

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           +RDA+RFH F  G+CSC D+W
Sbjct: 845 IRDAVRFHHFNGGSCSCGDYW 865



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 217/466 (46%), Gaps = 49/466 (10%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF----------------- 153
            F   L SC    +      +H  ++  GL   +F++N L+H                  
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 154 ---------------YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
                          Y   G +++A ++F    ARD+ S+NTL++GY Q ++   +L  F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 199 RKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
             M  S    P+AFTF     +C  L +  +  Q   +V K      S+  +  A+++M+
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSD--VAAALVDMF 183

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            +CG +++A R+F  +    +    +SM+ GY +   ++ A +LFD M +RD+VSW  M+
Sbjct: 184 VRCGTVDLASRLFVRIK-EPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMV 242

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           S  SQ G   +AL++   M+S G+  D  T  + L AC  L +L +GK+LH Q I N+  
Sbjct: 243 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPC 302

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + ++ +A++++YAKCG    A  VF  +    +    +  +I+G  QHG    S+ +F
Sbjct: 303 -IDPYVASALVELYAKCGCFKEAKGVFNSLHD--RNNVAWTVLIAGFLQHGCFTESVELF 359

Query: 438 REM--ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
            +M  ELM L  D     T++  C     +  G+Q     L  G    +     ++ + A
Sbjct: 360 NQMRAELMTL--DQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYA 417

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           +   L  A  + + M  + + V W +++ A     ++++G IA  +
Sbjct: 418 KCDNLQSAESIFRFMN-EKDIVSWTSMITA-----HSQVGNIAKAR 457



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 130/560 (23%), Positives = 247/560 (44%), Gaps = 105/560 (18%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNTLM GY +S     +L  + SM   G  SPN FTF + + SC  L 
Sbjct: 93  LFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALG 152

Query: 124 SFKSGCQIHCHIIKFGLE---------FDLFIRNALIHFYS-----------------IF 157
                 Q+   + KFG +          D+F+R   +   S                 + 
Sbjct: 153 ERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLV 212

Query: 158 GY-----INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
           GY     +++A ++F+    RD+VS+N +++  +Q      AL +   MQ   ++ D+ T
Sbjct: 213 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 272

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +  +AC  L+  R GKQ HA V +NL C+  +  + +A++ +YAKCG    A+ VF++
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPCI--DPYVASALVELYAKCGCFKEAKGVFNS 330

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +   ++  AW+ +I+G+ + G                                F++++EL
Sbjct: 331 L-HDRNNVAWTVLIAGFLQHG-------------------------------CFTESVEL 358

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M +  +  D+  +  ++  C     L  G++LH   +++    + + ++ ++I MYA
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI-QAVVVSNSLISMYA 417

Query: 393 KCGSIDTALSVFY---------------------KIPK--------NLKTVSLFNSIISG 423
           KC ++ +A S+F                       I K        + K V  +N+++  
Sbjct: 418 KCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGA 477

Query: 424 LAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             QHG  E  + ++  M     ++PD VT+VT+   C+  G  + G Q     +  G+  
Sbjct: 478 YIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIL 537

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
                  ++ + ++ GR+ EA  +   +    + V W A++     H    +G+ A +  
Sbjct: 538 DTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQH---GMGKQAIEIF 593

Query: 543 LDL-----EPDHGAHYVLLS 557
            D+     +PD+ ++  +LS
Sbjct: 594 DDILKRGAKPDYISYVAVLS 613


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 402/715 (56%), Gaps = 62/715 (8%)

Query: 19   KSLKQALQIHGQIVHSGLNHHI-----SSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
            + L++  ++H  ++ +G   HI      S+ L++ +A  G  +   R   +F  ++  + 
Sbjct: 396  QGLRKGREVHAHVLRAG---HIYRKIAVSNGLVNMYAKCGAIDKACR---VFQLMEARDR 449

Query: 74   FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
              WNT++    ++   + A++ Y  ++ +  + P+NF     L+SCA L    +G Q+HC
Sbjct: 450  ISWNTIITALDQNGYCEAAMMNYC-LMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHC 508

Query: 134  HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP-C 192
              +K+GL  D  + NAL+  Y   G ++   ++F    A D+VS+N+++   A  + P  
Sbjct: 509  DAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPIT 568

Query: 193  PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
             ++ +F  M  S + P+  TFV   +A T L+   +GKQ H+V+ K+             
Sbjct: 569  ESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKH------------- 615

Query: 253  VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLV 311
                                 G+++  A  ++++S Y + G ++   +LF +M  +RD +
Sbjct: 616  ---------------------GVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAI 654

Query: 312  SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH--- 368
            SW +MISGY   G   +A++    M       D  T   VL AC  + AL+ G  +H   
Sbjct: 655  SWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFG 714

Query: 369  -QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
             + ++E+     ++ + +A++DMY+KCG ID A  VF+ + +  K    +NS+ISG A+H
Sbjct: 715  LRSHLES-----DVVVESALVDMYSKCGRIDYASKVFHSMSQ--KNEFSWNSMISGYARH 767

Query: 428  GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
            GLG  ++ +F EM+  G  PD VTFV+VL ACSH GLVE G  +FE M +YGI P++EHY
Sbjct: 768  GLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHY 827

Query: 488  GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN-AKI--GEIAGQKLLD 544
             C++DLL R G LD+    ++ MP   N++IWR +L AC+  ++ AKI  G  A + LL+
Sbjct: 828  SCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLE 887

Query: 545  LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
            LEP +  +YVL S   A   RWE+  + R  M  + ++K  G S++     +H F+A  +
Sbjct: 888  LEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDR 947

Query: 605  SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
            SHP TKEI   L  +  K+++AGYVP T  V+ D++EE KE ++ YHSEKLA+AF L  S
Sbjct: 948  SHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRS 1007

Query: 665  RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             S   IRI KNLR+CGDCH AF+ +S+I  R+I++RD+IRFH FK G CSC D+W
Sbjct: 1008 SSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 234/529 (44%), Gaps = 55/529 (10%)

Query: 13  ALLESCKS-----LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           ++L +C+      L  A+Q+HG +  +    + +  + LIS +        +   R+ F 
Sbjct: 173 SVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRV-FD 231

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML--SKGI-VSPNNFTFPFVLNSCARLS 123
                ++  WN LM  Y++         L+ +M     GI + P   TF  ++ +   LS
Sbjct: 232 TTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITA-TYLS 290

Query: 124 SFKSGC--QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           S   G   Q+   ++K G   DL++ +AL+  ++  G ++ A  ++ G   R+ V+ N L
Sbjct: 291 SCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGL 350

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP----RIGKQFHAVVY 237
           I G  + +    A  +F   +DS    +  T+V + SA  E +      R G++ HA V 
Sbjct: 351 IAGLVKQQHGEAAAEIFMGARDSA-AVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVL 409

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           +  G +   + +   ++NMYAKCG ++ A RVF                           
Sbjct: 410 R-AGHIYRKIAVSNGLVNMYAKCGAIDKACRVF--------------------------- 441

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
             QL   M+ RD +SW  +I+   Q G    A+  +  M    I P     ++ L +C G
Sbjct: 442 --QL---MEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAG 496

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           LG L  G++LH   ++  ++  +  ++ A++ MY +CG +     +F  +  +   V  +
Sbjct: 497 LGLLAAGQQLHCDAVKWGLY-LDTSVSNALVKMYGECGRMSECWEIFNSMSAH--DVVSW 553

Query: 418 NSIISGLAQHGLGET-SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           NSI+  +A      T S+ VF  M   GL P+ VTFV  L A +   ++E GKQ    ML
Sbjct: 554 NSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVML 613

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +G+         ++   A+ G +D    L   M    +++ W ++++ 
Sbjct: 614 KHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISG 662



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 211/493 (42%), Gaps = 97/493 (19%)

Query: 122 LSSFKSGCQ-----IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           L   + GC      +H  ++K GL  DLF+ N L++ Y+    ++ A +VF+G   R+ V
Sbjct: 73  LRGRRPGCDASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAV 132

Query: 177 SYNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIG--KQF 232
           S+  LI+G+     P  A  LFR M  +    +P +FTF ++  AC +    R+G   Q 
Sbjct: 133 SWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQV 192

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKC--GLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           H +V K      SN  +  A+I+MY  C  G   +A+RVF T  + +    W++++S Y 
Sbjct: 193 HGLVSKTE--FTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPV-RDLITWNALMSVYA 249

Query: 291 REGK------IERARQ------------------------------LFDQMDQR------ 308
           + G       + RA Q                              L DQ+  R      
Sbjct: 250 KRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGC 309

Query: 309 --DLVSWTAMISGYSQVGGFSQALELF--------------------------------G 334
             DL   +A++S +++ G   +A +++                                G
Sbjct: 310 SSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMG 369

Query: 335 KMESLGIHPDE--VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
             +S  ++ D   V + A+         L  G+ +H   +      R I ++  +++MYA
Sbjct: 370 ARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYA 429

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCG+ID A  VF ++ +    +S +N+II+ L Q+G  E ++  +  M    + P     
Sbjct: 430 KCGAIDKACRVF-QLMEARDRIS-WNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAA 487

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           ++ L +C+  GL+  G+Q     + +G+         +V +    GR+ E + +  SM  
Sbjct: 488 ISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSM-- 545

Query: 513 DANSVI-WRALLA 524
            A+ V+ W +++ 
Sbjct: 546 SAHDVVSWNSIMG 558



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 143/279 (51%), Gaps = 8/279 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQI 68
           + LA L     L+   QIH  ++  G+   +   + L+S +A SG  +   R   LFS++
Sbjct: 591 NFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCER---LFSRM 647

Query: 69  DNPNIFI-WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
                 I WN+++ GY  +   QEA+     M+    +  ++ TF  VLN+CA +++ + 
Sbjct: 648 SGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMM-DHCTFSIVLNACASVAALER 706

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H   ++  LE D+ + +AL+  YS  G I+ A KVF     ++  S+N++I+GYA+
Sbjct: 707 GMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYAR 766

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL +F +MQ+S   PD  TFV++ SAC+       G  +  ++ ++ G +   +
Sbjct: 767 HGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGIL-PRI 824

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
              + VI++  + G ++  +     M M  +T  W +++
Sbjct: 825 EHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVL 863


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 392/707 (55%), Gaps = 46/707 (6%)

Query: 17  SCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS-RILFSQIDNPNIF 74
           S +S+    Q+HG I+ SG     S  + L++F+     KN    S R +F ++   ++ 
Sbjct: 207 SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL----KNQRVDSARKVFDEMTERDVI 262

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            WN+++ GY  +   ++ L ++  ML  GI   +  T   V   CA       G  +H  
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHSI 321

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            +K     +    N L+  YS  G +++A  VF     R +VSY ++I GYA+      A
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEA 381

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           + LF +M++  I PD +T  A+ + C        GK+ H  + +N   +G ++ +  A++
Sbjct: 382 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND--LGFDIFVSNALM 439

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
           +MYAKCG M  AE V                                F +M  +D++SW 
Sbjct: 440 DMYAKCGSMQEAELV--------------------------------FSEMRVKDIISWN 467

Query: 315 AMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            +I GYS+    ++AL LF  + E     PDE T+  VL AC  L A D G+ +H   + 
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N  F  +  +  +++DMYAKCG++  A  +F  I    K +  +  +I+G   HG G+ +
Sbjct: 528 NGYFS-DRHVANSLVDMYAKCGALLLAHMLFDDIAS--KDLVSWTVMIAGYGMHGFGKEA 584

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVD 492
           IA+F +M   G++ D ++FV++L ACSH GLV+EG +FF  M +   I+P +EHY C+VD
Sbjct: 585 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVD 644

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           +LAR G L +AY  I++MP   ++ IW ALL  CR+H + K+ E   +K+ +LEP++  +
Sbjct: 645 MLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGY 704

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVL++N+ AE  +WE+ +++RK +   G++K PG S+IE  G ++ F+A   S+P+T+ I
Sbjct: 705 YVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 764

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
           E  L+ +  ++   GY P T   + D +E EKE  +  HSEKLA+A G+I+S   + IR+
Sbjct: 765 EAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRV 824

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           TKNLR+CGDCH   K +S++ RREI++RD+ RFH FK G+CSC  FW
Sbjct: 825 TKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 253/523 (48%), Gaps = 46/523 (8%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFAL--SGCKNGLFRSRILFSQ 67
           S+L L    KSLK   ++   I  +G    +  S L S  +L  + C +    SR+ F +
Sbjct: 99  SVLQLCADSKSLKDGKEVDNFIRGNGF---VIDSNLGSKLSLMYTNCGDLKEASRV-FDE 154

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +       WN LM   ++S     ++ L+  M+S G V  +++TF  V  S + L S   
Sbjct: 155 VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLRSVHG 213

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H  I+K G      + N+L+ FY     +++A KVF+    RD++S+N++INGY  
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                  L +F +M  S I+ D  T V++F+ C +     +G+  H++  K   C     
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK--ACFSRED 331

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                +++MY+KCG ++ A+ VF  M   +S  +++SMI+GY REG    A +LF++M++
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                           GI PD  T+ AVL  C     LD GKR+
Sbjct: 391 E-------------------------------GISPDVYTVTAVLNCCARYRLLDEGKRV 419

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H+   EN + G +IF++ A++DMYAKCGS+  A  VF ++   +K +  +N+II G +++
Sbjct: 420 HEWIKENDL-GFDIFVSNALMDMYAKCGSMQEAELVFSEM--RVKDIISWNTIIGGYSKN 476

Query: 428 GLGETSIAVFR-EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
                ++++F   +E     PD  T   VL AC+     ++G++    ++  G       
Sbjct: 477 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 536

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
              +VD+ A+ G L  A+ L   +    + V W  ++A   +H
Sbjct: 537 ANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMH 578



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 166/342 (48%), Gaps = 11/342 (3%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           ++ A+L  C   + L +  ++H  I  + L   I  S+ L+  +A  G    +  + ++F
Sbjct: 399 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG---SMQEAELVF 455

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           S++   +I  WNT++ GYS++    EAL L+  +L +   SP+  T   VL +CA LS+F
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH +I++ G   D  + N+L+  Y+  G +  AH +F+   ++DLVS+  +I GY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   A+ LF +M+ + I+ D  +FV++  AC+       G +F  ++      +  
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK-IEP 634

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD-- 303
            +     +++M A+ G +  A R    M +      W +++ G      ++ A ++ +  
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 694

Query: 304 -QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
            +++  +   +  M + Y++   + Q   L  ++   G+  +
Sbjct: 695 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN 736


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 392/707 (55%), Gaps = 46/707 (6%)

Query: 17  SCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS-RILFSQIDNPNIF 74
           S +S+    Q+HG I+ SG     S  + L++F+     KN    S R +F ++   ++ 
Sbjct: 56  SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL----KNQRVDSARKVFDEMTERDVI 111

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            WN+++ GY  +   ++ L ++  ML  GI   +  T   V   CA       G  +H  
Sbjct: 112 SWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHSI 170

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
            +K     +    N L+  YS  G +++A  VF     R +VSY ++I GYA+      A
Sbjct: 171 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEA 230

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           + LF +M++  I PD +T  A+ + C        GK+ H  + +N   +G ++ +  A++
Sbjct: 231 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND--LGFDIFVSNALM 288

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
           +MYAKCG M  AE V                                F +M  +D++SW 
Sbjct: 289 DMYAKCGSMQEAELV--------------------------------FSEMRVKDIISWN 316

Query: 315 AMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            +I GYS+    ++AL LF  + E     PDE T+  VL AC  L A D G+ +H   + 
Sbjct: 317 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 376

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N  F  +  +  +++DMYAKCG++  A  +F  I    K +  +  +I+G   HG G+ +
Sbjct: 377 NGYFS-DRHVANSLVDMYAKCGALLLAHMLFDDIAS--KDLVSWTVMIAGYGMHGFGKEA 433

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVD 492
           IA+F +M   G++ D ++FV++L ACSH GLV+EG +FF  M +   I+P +EHY C+VD
Sbjct: 434 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVD 493

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           +LAR G L +AY  I++MP   ++ IW ALL  CR+H + K+ E   +K+ +LEP++  +
Sbjct: 494 MLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGY 553

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVL++N+ AE  +WE+ +++RK +   G++K PG S+IE  G ++ F+A   S+P+T+ I
Sbjct: 554 YVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 613

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
           E  L+ +  ++   GY P T   + D +E EKE  +  HSEKLA+A G+I+S   + IR+
Sbjct: 614 EAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRV 673

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           TKNLR+CGDCH   K +S++ RREI++RD+ RFH FK G+CSC  FW
Sbjct: 674 TKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 228/466 (48%), Gaps = 40/466 (8%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++       WN LM   ++S     ++ L+  M+S G V  +++TF  V  S + L S
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLRS 59

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G Q+H  I+K G      + N+L+ FY     +++A KVF+    RD++S+N++ING
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y         L +F +M  S I+ D  T V++F+ C +     +G+  H++  K   C  
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK--ACFS 177

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                   +++MY+KCG ++ A+ VF  M   +S  +++SMI+GY REG    A +LF++
Sbjct: 178 REDRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVSYTSMIAGYAREGLAGEAVKLFEE 236

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M++                                GI PD  T+ AVL  C     LD G
Sbjct: 237 MEEE-------------------------------GISPDVYTVTAVLNCCARYRLLDEG 265

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           KR+H+   EN + G +IF++ A++DMYAKCGS+  A  VF ++   +K +  +N+II G 
Sbjct: 266 KRVHEWIKENDL-GFDIFVSNALMDMYAKCGSMQEAELVFSEM--RVKDIISWNTIIGGY 322

Query: 425 AQHGLGETSIAVFR-EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           +++     ++++F   +E     PD  T   VL AC+     ++G++    ++  G    
Sbjct: 323 SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 382

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
                 +VD+ A+ G L  A+ L   +    + V W  ++A   +H
Sbjct: 383 RHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMH 427



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 166/342 (48%), Gaps = 11/342 (3%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           ++ A+L  C   + L +  ++H  I  + L   I  S+ L+  +A  G    +  + ++F
Sbjct: 248 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG---SMQEAELVF 304

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           S++   +I  WNT++ GYS++    EAL L+  +L +   SP+  T   VL +CA LS+F
Sbjct: 305 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 364

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH +I++ G   D  + N+L+  Y+  G +  AH +F+   ++DLVS+  +I GY
Sbjct: 365 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 424

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   A+ LF +M+ + I+ D  +FV++  AC+       G +F  ++      +  
Sbjct: 425 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK-IEP 483

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD-- 303
            +     +++M A+ G +  A R    M +      W +++ G      ++ A ++ +  
Sbjct: 484 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 543

Query: 304 -QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
            +++  +   +  M + Y++   + Q   L  ++   G+  +
Sbjct: 544 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN 585


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/612 (38%), Positives = 355/612 (58%), Gaps = 47/612 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR- 173
           +L +C  L       QIH HI+K GL  +  +        S+    + A      + A  
Sbjct: 35  LLQACNALPKLT---QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADT 91

Query: 174 ---DLVSYNTLINGYAQV-KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
              D   +NTLI  YAQ       AL L+  M    I P+ FT+  +  AC  L    +G
Sbjct: 92  RLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLG 151

Query: 230 KQFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           +  H  V K    C   ++ ++  +++MY+ C                            
Sbjct: 152 QTVHGSVVKFGFDC---DIHVQNTMVHMYSCCA--------------------------- 181

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
               G I  AR++FD+M + D V+W+AMI GY++VG  ++A+ LF +M+   + PDE+TM
Sbjct: 182 ----GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITM 237

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V++L AC  LGAL+ GK + + YIE     + + ++ A+IDM+AKCG I  AL +F  + 
Sbjct: 238 VSMLSACTDLGALELGKWI-EAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAM- 295

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
            N KT+  + S+I G+A HG G+ +  +F EM   G+ PD V F+ +L ACSH GLVE G
Sbjct: 296 -NEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERG 354

Query: 469 KQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           +++F SM+  Y + P++EHYGCMVD+  R G + EA   +++MP + N VI R L++ACR
Sbjct: 355 REYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACR 414

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
            H   K+GE   + L+  EP H ++YVLLSN+ A+T  WE+  ++R++M+  G++K PG 
Sbjct: 415 GHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGS 474

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV 647
           + IE +  ++ F+A  KSH Q KEI  M+ +M  ++K +GY P+T +V+ D++EE+KE  
Sbjct: 475 TMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDS 534

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           ++ HSEKLA+AFGL+ +     IRI KNLR+C DCH A K +S+IY REI++RD  RFH 
Sbjct: 535 LNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHH 594

Query: 708 FKKGNCSCMDFW 719
           FK G CSC DFW
Sbjct: 595 FKSGQCSCGDFW 606



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 214/424 (50%), Gaps = 56/424 (13%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL-FRSRILFSQIDN 70
           LALL++C +L +  QIH  I+  GL  H +   L  F ++S   +   + +  LFS   +
Sbjct: 33  LALLQACNALPKLTQIHTHILKLGL--HNNPLVLTKFASISSLIHATDYAASFLFSAEAD 90

Query: 71  PNI---FIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
             +   F++NTL+R Y+++  S  +AL LY  ML   I+ PN FT+PFVL +CA L    
Sbjct: 91  TRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAIL-PNKFTYPFVLKACAGLEVLN 149

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            G  +H  ++KFG + D+ ++N ++H YS   G IN+A KVF+     D V+++ +I GY
Sbjct: 150 LGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGY 209

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+V     A+ LFR+MQ + + PD  T V+M SACT+L    +GK   A + ++   +  
Sbjct: 210 ARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHE--IHK 267

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            + +  A+I+M+AKCG ++ A ++F  M   K+  +W+S+I G    G+ + A  LF++M
Sbjct: 268 PVEVSNALIDMFAKCGDISKALKLFRAMN-EKTIVSWTSVIVGMAMHGRGQEATCLFEEM 326

Query: 306 DQR----DLVSWTAMISGYSQVGGFSQALELFGKM------------------------- 336
                  D V++  ++S  S  G   +  E FG M                         
Sbjct: 327 TSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGL 386

Query: 337 --------ESLGIHPDEVTMVAVLRACVGLGALDFGKRL------HQQYIE-NVVFGRNI 381
                    ++ I P+ V +  ++ AC G G    G+++      H+   E N V   NI
Sbjct: 387 VKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNI 446

Query: 382 FLTT 385
           +  T
Sbjct: 447 YAKT 450


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 358/623 (57%), Gaps = 39/623 (6%)

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
            +L  G ++P    +   + +CA+  + +   +IH H+       D F+ N+LIH Y   
Sbjct: 40  DLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC 99

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
             + +A  VF+    +D+VS+ +LI GYAQ   P  A+ L   M     +P+ FTF ++ 
Sbjct: 100 RSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 218 SACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            A     D   G+Q HA+  K   C    ++ + +A+++MYA+CG               
Sbjct: 160 KAAGAYADSGTGRQIHALAVK---CGWHEDVYVGSALLDMYARCG--------------- 201

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
                            K++ A  +FD++D ++ VSW A+ISG+++ G    AL  F +M
Sbjct: 202 -----------------KMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEM 244

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G      T  +V  +   LGAL+ GK +H   I++       F+   ++DMYAK GS
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQ-KLTAFVGNTLLDMYAKSGS 303

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  A  VF ++    K +  +NS+++  AQ+GLG+ +++ F EM   G+  + +TF+ +L
Sbjct: 304 MIDARKVFDRVDN--KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCIL 361

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
            ACSHGGLV+EGK++FE M  Y ++P+++HY  +V LL R G L+ A   I  MP +  +
Sbjct: 362 TACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTA 421

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            +W ALLAACR+H+NAK+G+ A   + +L+PD     VLL N+ A T +W+ A +VR +M
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMM 481

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
             +G++K P  S++E   ++H F+A+  +HPQ +EI  M  +++ K++  GYVP+   V+
Sbjct: 482 KTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVL 541

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
             VD++EKE  + YHSEKLALAF LI   +  TIRI KN+RICGDCH AFK +S+++ RE
Sbjct: 542 LHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGRE 601

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD  RFH F  G+CSC D+W
Sbjct: 602 IVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 208/442 (47%), Gaps = 43/442 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCK-NGLFRSRILFS 66
           + S +      K+L+ A +IH    H G +     + L +      CK   +  +R +F 
Sbjct: 54  YRSFITACAQSKNLEDARKIHA---HLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFD 110

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           Q+   ++  W +L+ GY+++D P EA+ L   ML KG   PN FTF  +L +    +   
Sbjct: 111 QMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSG 169

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G QIH   +K G   D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI+G+A
Sbjct: 170 TGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  +   AL  F +M  +  +   FT+ ++FS+   L     GK  HA V K+   + + 
Sbjct: 230 RKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA- 288

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +   +++MYAK G M  A +VF                                D++D
Sbjct: 289 -FVGNTLLDMYAKSGSMIDARKVF--------------------------------DRVD 315

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            +DLV+W +M++ ++Q G   +A+  F +M   G++ +++T + +L AC   G +  GKR
Sbjct: 316 NKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKR 375

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             +  ++       I     V+ +  + G ++ AL   +K+P    T +++ ++++    
Sbjct: 376 YFEM-MKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPME-PTAAVWGALLAACRM 433

Query: 427 HGLGETSIAVFREMELMGLKPD 448
           H      +  F    +  L PD
Sbjct: 434 H--KNAKVGQFAADHVFELDPD 453


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/738 (33%), Positives = 416/738 (56%), Gaps = 51/738 (6%)

Query: 23  QALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           +  Q H +I+ SG  N    S++LI+ ++   C N    + ++   I +P ++ +++L+ 
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFN---DADLILQSIPDPTVYSFSSLIY 89

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
             +++    +++ +++ M S G++ P+    P +   CA LS+FK+G QIHC     GL+
Sbjct: 90  ALTKAKLFSQSIGVFSRMFSHGLI-PDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLD 148

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK------------ 189
            D F++ +L H Y   G + +A KVF+    +D+V+ + L+ GYA+              
Sbjct: 149 MDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEM 208

Query: 190 -----EPCPALW------------------LFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
                EP    W                  +F+KM      PD  T  ++  +  +  + 
Sbjct: 209 EKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENL 268

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +G+Q H  V K  G +    ++ +A+++MY K G +    ++F    M + T   ++ I
Sbjct: 269 NMGRQIHGYVIKQ-GLLKDKCVI-SAMLDMYGKSGHVYGIIKLFDEFEMME-TGVCNAYI 325

Query: 287 SGYTREGKIERARQLF----DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +G +R G +++A ++F    +Q  + ++VSWT++I+G +Q G   +ALELF +M+  G+ 
Sbjct: 326 TGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+ VT+ ++L AC  + AL  G+  H  +   V    ++ + +A+IDMYAKCG I  +  
Sbjct: 386 PNRVTIPSMLPACGNIAALGHGRSTHG-FAVRVHLLDDVHVGSALIDMYAKCGRIKMSQI 444

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +P   K +  +NS+++G + HG  +  +++F  +    LKPD ++F ++L AC   
Sbjct: 445 VFNMMPT--KNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GL +EG ++F  M   YGIKP++EHY CMV+LL R G+L EAY LI+ +P++ +S +W A
Sbjct: 503 GLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGA 562

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL +CRL  N  + EIA QKL  LEP++   YVL+SN+ A    W E   +R  M+  G+
Sbjct: 563 LLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K PG S+I+    ++  LA  KSHPQ  +I   + +++ +++ +G+ PN    + DV+E
Sbjct: 623 KKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEE 682

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           +E+E ++  HSEKLA+ FGL+N+     +++ KNLRICGDCH   K +S    REI +RD
Sbjct: 683 QEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRD 742

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH FK G CSC DFW
Sbjct: 743 TNRFHHFKDGICSCGDFW 760


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/704 (36%), Positives = 387/704 (54%), Gaps = 46/704 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNP--NIFIW 76
           KSLK A QIH Q+V +  N+H S + + +   L      +  + +LF+   +P  N+  W
Sbjct: 111 KSLKHATQIHSQLVTT--NNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTW 168

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            TL+   SRS+ P +AL  +  M + GI  PN+FTF  +L +CA  +    G QIH  I 
Sbjct: 169 TTLINQLSRSNKPFQALTFFNRMRTTGIY-PNHFTFSAILPACAHAALLSEGQQIHALIH 227

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K     D F+  AL+  Y+  G +  A  VF+    R+LVS+N++I G+ + K    A+ 
Sbjct: 228 KHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIG 287

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           +FR++    + PD  +  ++ SAC  L +   GKQ H  + K  G VG  + +K ++++M
Sbjct: 288 VFREVLS--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKR-GLVGL-VYVKNSLVDM 343

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           Y KCGL                                 E A +LF     RD+V+W  M
Sbjct: 344 YCKCGL--------------------------------FEDATKLFCGGGDRDVVTWNVM 371

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I G  +   F QA   F  M   G+ PDE +  ++  A   + AL  G  +H   ++   
Sbjct: 372 IMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGH 431

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
             +N  ++++++ MY KCGS+  A  VF +  ++   V  + ++I+   QHG    +I +
Sbjct: 432 V-KNSRISSSLVTMYGKCGSMLDAYQVFRETKEH--NVVCWTAMITVFHQHGCANEAIKL 488

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F EM   G+ P+ +TFV+VL ACSH G +++G ++F SM N + IKP +EHY CMVDLL 
Sbjct: 489 FEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLG 548

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R GRL+EA   I+SMP++ +S++W ALL AC  H N ++G    ++L  LEPD+  +Y+L
Sbjct: 549 RVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYML 608

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+       EEA +VR+LM  +G++K  G S+I+       F A+ +SH +T+EI  M
Sbjct: 609 LSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGM 668

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+ +   +K  GYV  T Q   +  E  +E  +  HSEKLALAFGL+       +RI KN
Sbjct: 669 LQKLKELIKRRGYVAET-QFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKN 727

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR CGDCH   K  SEI++REI+VRD  RFH F  G+CSCMD+W
Sbjct: 728 LRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 200/417 (47%), Gaps = 42/417 (10%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG--SLA 172
           +LN+ A+L S K   QIH  ++       L   N L+  Y+  G I++   +F      +
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            ++V++ TLIN  ++  +P  AL  F +M+ + I P+ FTF A+  AC        G+Q 
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA+++K+  C  ++  + TA+++MYAKCG M +AE VF  M   ++  +W+SMI G+ + 
Sbjct: 223 HALIHKH--CFLNDPFVATALLDMYAKCGSMLLAENVFDEMP-HRNLVSWNSMIVGFVKN 279

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
               RA                        +G F + L       SLG  PD+V++ +VL
Sbjct: 280 KLYGRA------------------------IGVFREVL-------SLG--PDQVSISSVL 306

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC GL  LDFGK++H   ++  + G  +++  +++DMY KCG  + A  +F       +
Sbjct: 307 SACAGLVELDFGKQVHGSIVKRGLVGL-VYVKNSLVDMYCKCGLFEDATKLF--CGGGDR 363

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +N +I G  +    E +   F+ M   G++PD  ++ ++  A +    + +G    
Sbjct: 364 DVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIH 423

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             +L  G          +V +  + G + +AY + +    + N V W A++     H
Sbjct: 424 SHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETK-EHNVVCWTAMITVFHQH 479



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 226/503 (44%), Gaps = 87/503 (17%)

Query: 8   HSSLLALLESCKS---LKQALQIHGQI-VHSGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           H +  A+L +C     L +  QIH  I  H  LN    ++ L+  +A  G    +  +  
Sbjct: 200 HFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCG---SMLLAEN 256

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++ + N+  WN+++ G+ ++     A+ ++  +LS G   P+  +   VL++CA L 
Sbjct: 257 VFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG---PDQVSISSVLSACAGLV 313

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G Q+H  I+K GL   ++++N+L+  Y   G   +A K+F G   RD+V++N +I 
Sbjct: 314 ELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIM 373

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G  + +    A   F+ M    ++PD  ++ ++F A   +     G   H+ V K  G V
Sbjct: 374 GCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKT-GHV 432

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N  + ++++ MY KCG                      SM+  Y          Q+F 
Sbjct: 433 -KNSRISSSLVTMYGKCG----------------------SMLDAY----------QVFR 459

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +  + ++V WTAMI+ + Q G  ++A++LF +M + G+ P+ +T V+VL AC   G +D 
Sbjct: 460 ETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDD 519

Query: 364 GKRLHQQY--IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G +       + N+  G   +    ++D+  + G ++ A                     
Sbjct: 520 GFKYFNSMANVHNIKPGLEHY--ACMVDLLGRVGRLEEAC-------------------- 557

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
                           R +E M  +PD + +  +L AC     VE G++  E +  + ++
Sbjct: 558 ----------------RFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERL--FKLE 599

Query: 482 PQME-HYGCMVDLLARDGRLDEA 503
           P    +Y  + ++  R G L+EA
Sbjct: 600 PDNPGNYMLLSNIYIRHGMLEEA 622


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 362/614 (58%), Gaps = 22/614 (3%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN--AHKVFEGSLAR 173
           L+ C  L+  K   QIH H+++ GL+   +I   LI   +  G   +  A +V E    R
Sbjct: 56  LDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFR 112

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +   +  +I GYA   +   A+ ++  M+   I P +FTF A+  AC  + D  +G+QFH
Sbjct: 113 NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFH 172

Query: 234 AVVYKNLG-C---VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           A  ++  G C   VG+ M      I+MY KC  ++ A +VF  M   +   +W+ +I+ Y
Sbjct: 173 AQTFRLRGFCFVYVGNTM------IDMYVKCESIDCARKVFDEMP-ERDVISWTELIAAY 225

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            R G +E A +LF+ +  +D+V+WTAM++G++Q     +ALE F +ME  GI  DEVT+ 
Sbjct: 226 ARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVA 285

Query: 350 AVLRACVGLGALDFGKRLHQ-QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             + AC  LGA  +  R  Q           ++ + +A+IDMY+KCG+++ A++VF  + 
Sbjct: 286 GYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM- 344

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEE 467
            N K V  ++S+I GLA HG  + ++ +F  M     +KP+ VTFV  L ACSH GLV++
Sbjct: 345 -NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQ 403

Query: 468 GKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+Q F+SM   +G++P  +HY CMVDLL R GRL EA  LI++M  + +  +W ALL AC
Sbjct: 404 GRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGAC 463

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H N +I EIA + L +LEPD   +Y+LLSN+ A    W    +VRKL+ + G++K P 
Sbjct: 464 RIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPA 523

Query: 587 WSYI-EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
            S++ + NG +H+F     +HP + +I+  L+++  +L   GY P+   V +DV +  K 
Sbjct: 524 VSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKR 583

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  H+EKLALAF L+ +    TI I KNLR+C DCH   +L SE+  + I++RD +RF
Sbjct: 584 LILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRF 643

Query: 706 HLFKKGNCSCMDFW 719
           H F+ G+CSC DFW
Sbjct: 644 HHFRSGDCSCGDFW 657



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 184/429 (42%), Gaps = 67/429 (15%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFS- 66
           SSL++ L+ C +L Q  QIHG ++  GL+      ++LI      G     +  R++   
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           Q  NP  F+W  ++RGY+      EA+ +Y  M  K  ++P +FTF  +L +C  +    
Sbjct: 110 QFRNP--FLWTAVIRGYAIEGKFDEAIAMYGCM-RKEEITPVSFTFSALLKACGTMKDLN 166

Query: 127 SGCQIH---------CHIIKFGLEFDLFIR----------------------NALIHFYS 155
            G Q H         C +       D++++                        LI  Y+
Sbjct: 167 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYA 226

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G +  A ++FE    +D+V++  ++ G+AQ  +P  AL  F +M+ S I+ D  T   
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
             SAC +L   +   +   +  K+      ++++ +A+I+MY+KCG +  A  VF +M  
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN- 345

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
           +K+   +SSMI G    G+ + A  LF  M     V+ T                     
Sbjct: 346 NKNVFTYSSMILGLATHGRAQEALHLFHYM-----VTQTE-------------------- 380

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
                I P+ VT V  L AC   G +D G+++     +           T ++D+  + G
Sbjct: 381 -----IKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTG 435

Query: 396 SIDTALSVF 404
            +  AL + 
Sbjct: 436 RLQEALELI 444



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 41/253 (16%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           S  A L + K   +A+QI  +  +S  +H +  S LI  +  S C N +  +  +F  ++
Sbjct: 289 SACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY--SKCGN-VEEAVNVFMSMN 345

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           N N+F +++++ G +     QEAL L+  M+++  + PN  TF   L +C+       G 
Sbjct: 346 NKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGR 405

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+          FD          Y  FG              RD   Y  +++   +  
Sbjct: 406 QV----------FD--------SMYQTFGV----------QPTRD--HYTCMVDLLGRTG 435

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNML 248
               AL L + M    ++P    + A+  AC   N+P I +     +++     +G+ +L
Sbjct: 436 RLQEALELIKTMS---VEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYIL 492

Query: 249 LKTAVINMYAKCG 261
           L     N+YA  G
Sbjct: 493 LS----NVYASAG 501


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/605 (39%), Positives = 374/605 (61%), Gaps = 12/605 (1%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L +L+SC S+ Q  QI   I  +GL + I  +S+L++F ALS   + +  + ++F Q + 
Sbjct: 56  LLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGD-IHYAHLIFDQTEL 114

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN F WNT+++GY +++ P      +  M+ +     ++ +F F L +C + +    G  
Sbjct: 115 PNCFFWNTMIKGYCKANHPSMGFSFFRQMI-RNRAEFDSGSFVFALKACGQFAEKIVGMA 173

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H  I K G + DLF++N LI  Y   G +  A ++F+ S  +D+V++ T+INGYA+   
Sbjct: 174 VHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNW 233

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLL 249
              A+ LF  M  S ++P+  T +A+ SAC++  D  +GK  H  +  K++ C   ++ L
Sbjct: 234 LDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITC---SLNL 290

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+++MY KCG +  A  +F+ M   +   +W+S+++GY + G +  AR+LFD+M +R+
Sbjct: 291 LNAMLDMYVKCGCLTTAREIFNNME-RRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERN 349

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +VSW AMI+GYSQ     +ALELF  M + +G+ P E T+V VL A   LG L+ G+ +H
Sbjct: 350 IVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIH 409

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             ++  +    ++ L  AV+DMYAKCGSID A  +F+ +P+  K +  +NS+IS  A +G
Sbjct: 410 CNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPE--KNLVSWNSMISAYASYG 467

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
             + ++ +F +M   GLKPD +TF+ VL ACS+GG V EG+  FESM N +G++P+ EHY
Sbjct: 468 HAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHY 527

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            CMVDLL+R G L EAY LI  MP +A+   W ALL ACR H N ++ ++AG+KLL+L+P
Sbjct: 528 ACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDP 587

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           +    Y LL+N+ A+  +W++ R VR++M + G++K PG S IE  G  H FL +  SH 
Sbjct: 588 EDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTSHT 647

Query: 608 QTKEI 612
           ++ EI
Sbjct: 648 RSSEI 652


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/768 (33%), Positives = 410/768 (53%), Gaps = 81/768 (10%)

Query: 25  LQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI-DNPNIFIWNTLMRGY 83
           +Q+H   V +GL+  I  +   +  A+ G    +  +R +F +   + N   WN +M  +
Sbjct: 120 VQVHAVAVSTGLSGDIFVAN--ALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
            ++D   +A+ L+  M+  G V PN F F  V+N+C      ++G ++H  +++ G + D
Sbjct: 178 VKNDRCSDAVELFGEMVWSG-VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKD 236

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
           +F  NAL+  YS  G I+ A  VF      D+VS+N  I+G         AL L  +M+ 
Sbjct: 237 VFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 204 SCIQPDAFTFVA----------------------MFSACTE------------------L 223
           S + P+ FT  +                      M  AC +                  L
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLL 356

Query: 224 NDPRIGKQFHAVVYKNL-------------GCVGSNMLL---------------KTAVIN 255
           +D R  K F  +  K+L             GC G ++ L                 AV+ 
Sbjct: 357 DDAR--KVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLK 414

Query: 256 MYAKCGLMNMAERVFS---TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
             A    ++   +V +    +G    +   + +I  Y +   +  A ++F++    ++++
Sbjct: 415 STASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIA 474

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           +T+MI+  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I
Sbjct: 475 FTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 534

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           +   F  ++F   A++  YAKCGSI+ A   F  +P   K V  ++++I GLAQHG G+ 
Sbjct: 535 KRK-FMTDVFAGNALVYTYAKCGSIEDADLAFSGLPD--KGVVSWSAMIGGLAQHGHGKR 591

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMV 491
           ++ VFR M    + P+ +T  +VLCAC+H GLV+E K +F SM   +GI    EHY CM+
Sbjct: 592 ALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMI 651

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G+LD+A  L+ SMP++AN+ +W ALLAA R+HR+ ++G++A +KL  LEP+   
Sbjct: 652 DLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSG 711

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
            +VLL+N  A    W+E  +VRKLM DS ++K P  S++E    +H F+   KSHP+ ++
Sbjct: 712 THVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARD 771

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L+++   +  AGYVPN    + DVD+ EKE ++S+HSE+LA+AF LI++ +   IR
Sbjct: 772 IYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIR 831

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + KNLRIC DCH+AFK +S+I  REI++RD  RFH F  G CSC D+W
Sbjct: 832 VKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 227/451 (50%), Gaps = 48/451 (10%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S LL    + +SL     IH  ++ SGL H   +  L+SF+  S C+     +R +F + 
Sbjct: 8   SPLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRN-HLLSFY--SKCRLP-GSARRVFDET 63

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +P    W++L+  YS +  P+EAL  + +M ++G V  N F  P VL  CA  +    G
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARG-VRCNEFALPIVLK-CAPDAGL--G 119

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGYAQ 187
            Q+H   +  GL  D+F+ NAL+  Y  FG+++ A +VF E +  R+ VS+N +++ + +
Sbjct: 120 VQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVK 179

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF +M  S ++P+ F F  + +ACT   D   G++ HA+V +       ++
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRT--GYDKDV 237

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
               A+++MY+K G ++MA  VF  +  +    +W++ ISG                   
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKT-DVVSWNAFISG------------------- 277

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR--ACVGLGALDFGK 365
                   ++ G+ Q      ALEL  +M+S G+ P+  T+ ++L+  A  G GA   G+
Sbjct: 278 -------CVLHGHDQ-----HALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGR 325

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H   I+      + ++  A++DMYAK G +D A  VF  IP+  K + L+N++ISG +
Sbjct: 326 QIHGFMIKACA-DSDDYIGVALVDMYAKYGLLDDARKVFEWIPR--KDLLLWNALISGCS 382

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
             G    S+++F  M   G   +  T   VL
Sbjct: 383 HGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 52/324 (16%)

Query: 6   LEHSSLLALLESCKSLK---QALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFR 60
           +  ++L A+L+S  SL+      Q+H      G   + H+ +  + S++      N L  
Sbjct: 404 INRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKC----NCLRY 459

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +  +F +  + NI  + +++   S+ D  ++A+ L+  ML KG+  P+ F    +LN+CA
Sbjct: 460 ANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGL-EPDPFVLSSLLNACA 518

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            LS+++ G Q+H H+IK     D+F  NAL++ Y+  G I +A   F G   + +VS++ 
Sbjct: 519 SLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSA 578

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G AQ      AL +FR+M D  I P+  T  ++  AC            HA      
Sbjct: 579 MIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACN-----------HA------ 621

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM----GMSKSTAAWSSMISGYTREGKIE 296
                               GL++ A+  FS+M    G+ ++   +S MI    R GK++
Sbjct: 622 --------------------GLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 661

Query: 297 RARQLFDQMD-QRDLVSWTAMISG 319
            A +L + M  + +   W A+++ 
Sbjct: 662 DAMELVNSMPFEANAAVWGALLAA 685



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           ++  Y+KC    +A  VF + P        ++S+++  + + L   ++A FR M   G++
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVS--WSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
            +      VL      GL   G Q     ++ G+   +     +V +    G +DEA  +
Sbjct: 101 CNEFALPIVLKCAPDAGL---GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRV 157

Query: 507 IQSMPYDANSVIWRALLAA 525
                 D N+V W  +++A
Sbjct: 158 FDEAARDRNAVSWNGMMSA 176


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/662 (35%), Positives = 377/662 (56%), Gaps = 45/662 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W  ++  +++    ++A+ L+  M   G V P+ FT+  VL++C  L 
Sbjct: 205 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELG 263

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGYINNAHKVFEGSLARDLVSYNT 180
               G Q+H  +I+ GL  D+ +  +L+  Y+     G ++++ KVFE     +++S+  
Sbjct: 264 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 323

Query: 181 LINGYAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           +I  Y Q  E C   A+ LF KM    I+P+ F+F ++  AC  L+DP  G+Q ++   K
Sbjct: 324 IITAYVQSGE-CDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 382

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                                             +G++      +S+IS Y R G++E A
Sbjct: 383 ----------------------------------LGIASVNCVGNSLISMYARSGRMEDA 408

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R+ FD + +++LVS+ A++ GY++     +A  LF ++   GI     T  ++L     +
Sbjct: 409 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 468

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GA+  G+++H + ++   +  N  +  A+I MY++CG+I+ A  VF ++    + V  + 
Sbjct: 469 GAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMED--RNVISWT 525

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
           S+I+G A+HG    ++ +F +M   G KP+ +T+V VL ACSH G++ EG++ F SM   
Sbjct: 526 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 585

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI P+MEHY CMVDLL R G L EA   I SMP  A++++WR LL ACR+H N ++G  
Sbjct: 586 HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 645

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A + +L+ EPD  A Y+LLSN+ A   +W++  ++RK M +  + K  G S+IE    +H
Sbjct: 646 AAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 705

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
           RF   + SHPQ  +I   L  +  K+K  GY+P+T  V+ D++EE+KE  +  HSEK+A+
Sbjct: 706 RFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAV 765

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI++   + IRI KNLR+CGDCH A K +S    REI+VRD+ RFH  K G CSC D
Sbjct: 766 AFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCND 825

Query: 718 FW 719
           +W
Sbjct: 826 YW 827



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 205/410 (50%), Gaps = 40/410 (9%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           ++++    P+  T+  +L SC R  +F+ G  +H  +++ GLE D  + N LI  YS  G
Sbjct: 34  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 93

Query: 159 YINNAHKVFEG-SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
               A  +FEG    RDLVS++ +++ +A       A+W F  M +    P+ + F A+ 
Sbjct: 94  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 153

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
            AC+  N   +G+  +  V K  G + +++ +   +I+M+ K                  
Sbjct: 154 RACSNANYAWVGEIIYGFVVKT-GYLEADVCVGCELIDMFVK------------------ 194

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                          G +  A ++FD+M +R+LV+WT MI+ ++Q+G    A++LF  ME
Sbjct: 195 -------------GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC--- 394
             G  PD  T  +VL AC  LG L  GK+LH + I  +    ++ +  +++DMYAKC   
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAAD 300

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDGVTFV 453
           GS+D +  VF ++P++   V  + +II+   Q G   + +I +F +M    ++P+  +F 
Sbjct: 301 GSVDDSRKVFEQMPEH--NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFS 358

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           +VL AC +      G+Q +   +  GI         ++ + AR GR+++A
Sbjct: 359 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 408



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 262/525 (49%), Gaps = 49/525 (9%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+SC   ++ +    +H +++ SGL    +  + LIS ++  G       +R++F  + 
Sbjct: 50  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE---TARLIFEGMG 106

Query: 70  NP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           N  ++  W+ ++  ++ +    +A+  +  ML  G   PN + F  V+ +C+  +    G
Sbjct: 107 NKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY-PNEYCFAAVIRACSNANYAWVG 165

Query: 129 CQIHCHIIKFG-LEFDLFIRNALIH-FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
             I+  ++K G LE D+ +   LI  F    G + +A+KVF+    R+LV++  +I  +A
Sbjct: 166 EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFA 225

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q+     A+ LF  M+ S   PD FT+ ++ SACTEL    +GKQ H+ V + LG +  +
Sbjct: 226 QLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR-LG-LALD 283

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  ++++MYAKC                               +G ++ +R++F+QM 
Sbjct: 284 VCVGCSLVDMYAKCA-----------------------------ADGSVDDSRKVFEQMP 314

Query: 307 QRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           + +++SWTA+I+ Y Q G    +A+ELF KM S  I P+  +  +VL+AC  L     G+
Sbjct: 315 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 374

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGL 424
           +++   ++  +   N  +  ++I MYA+ G ++ A   F  +  KNL +   +N+I+ G 
Sbjct: 375 QVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVS---YNAIVDGY 430

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A++   E +  +F E+   G+     TF ++L   +  G + +G+Q    +L  G K   
Sbjct: 431 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 490

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
                ++ + +R G ++ A+ +   M  D N + W +++     H
Sbjct: 491 CICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKH 534



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           +SS+L+       L    Q+H +++  GL   +     L+  +A       +  SR +F 
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311

Query: 67  QIDNPNIFIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           Q+   N+  W  ++  Y +S +  +EA+ L+  M+S G + PN+F+F  VL +C  LS  
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 370

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G Q++ + +K G+     + N+LI  Y+  G + +A K F+    ++LVSYN +++GY
Sbjct: 371 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 430

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +   A  LF ++ D+ I   AFTF ++ S    +     G+Q H  + K  G   S
Sbjct: 431 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK--GGYKS 488

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N  +  A+I+MY++CG +  A +VF+ M   ++  +W+SMI+G+ + G   RA ++F   
Sbjct: 489 NQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFH-- 545

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG- 364
                                        KM   G  P+E+T VAVL AC  +G +  G 
Sbjct: 546 -----------------------------KMLETGTKPNEITYVAVLSACSHVGMISEGQ 576

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           K  +  Y E+ +  R +     ++D+  + G +  A+     +P
Sbjct: 577 KHFNSMYKEHGIVPR-MEHYACMVDLLGRSGLLVEAMEFINSMP 619



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 9/297 (3%)

Query: 8   HSSLLALLESCKSLKQAL---QIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRI 63
           H S  ++L++C +L       Q++   V  G+   +   + LIS +A SG    +  +R 
Sbjct: 354 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG---RMEDARK 410

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N+  +N ++ GY+++   +EA +L+  +   GI   + FTF  +L+  A + 
Sbjct: 411 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIG 469

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G QIH  ++K G + +  I NALI  YS  G I  A +VF     R+++S+ ++I 
Sbjct: 470 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 529

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+A+      AL +F KM ++  +P+  T+VA+ SAC+ +     G++    +YK  G V
Sbjct: 530 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 589

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              M     ++++  + GL+  A    ++M +      W +++      G  E  R 
Sbjct: 590 -PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 645



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 17/245 (6%)

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            VG    A      M      PD  T   +L++C+       GK +H++ +++ +   ++
Sbjct: 21  DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 80

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            L T +I +Y+KCG  +TA  +F  +      VS +++++S  A + +   +I  F +M 
Sbjct: 81  VLNT-LISLYSKCGDTETARLIFEGMGNKRDLVS-WSAMVSCFANNSMEWQAIWTFLDML 138

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLAR-DGR 499
            +G  P+   F  V+ ACS+      G+  +  ++  G        GC ++D+  +  G 
Sbjct: 139 ELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 198

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG--EIAGQKLLDLE-----PDHGAH 552
           L  AY +   MP + N V W  ++      R A++G    A    LD+E     PD   +
Sbjct: 199 LGSAYKVFDKMP-ERNLVTWTLMIT-----RFAQLGCARDAIDLFLDMELSGYVPDRFTY 252

Query: 553 YVLLS 557
             +LS
Sbjct: 253 SSVLS 257


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/703 (34%), Positives = 390/703 (55%), Gaps = 43/703 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           ++++   Q+H  +V  G +  + +++ L+  +   G  +    + ++F ++ + ++  WN
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVD---IASVIFEKMPDSDVVSWN 272

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            L+ G   +     A+ L   M   G+V PN FT   +L +C+   +F  G QIH  +IK
Sbjct: 273 ALISGCVLNGHDHRAIELLLQMKYSGLV-PNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              + D +I   L+  Y+   ++++A KVF+    RDL+  N LI+G +       AL L
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSL 391

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +++   +  +  T  A+  +   L      +Q HA+  K +G +    ++   +I+ Y
Sbjct: 392 FYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK-IGFIFDAHVV-NGLIDSY 449

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KC  ++ A RVF                                ++    D+++ T+MI
Sbjct: 450 WKCSCLSDANRVF--------------------------------EECSSGDIIACTSMI 477

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I+   F
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ-F 536

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F   A++  YAKCGSI+ A   F  +P+  + V  ++++I GLAQHG G+ ++ +F
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLPE--RGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M   G+ P+ +T  +VLCAC+H GLV+E K++F SM   +GI    EHY CM+DLL R
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+LD+A  L+ SMP+ AN+ IW ALL A R+H++ ++G++A +KL  LEP+    +VLL
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           +N  A    W E  +VRKLM DS I+K P  S+IE    +H F+   KSHP TKEI   L
Sbjct: 715 ANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
            ++   +  AG+VPN    + D+D  EKE ++S+HSE+LA+AF L+++     IR+ KNL
Sbjct: 775 VELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNL 834

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RIC DCH+AFK +S+I  REI++RD  RFH F+ G CSC D+W
Sbjct: 835 RICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 222/452 (49%), Gaps = 52/452 (11%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFS 66
           S  L    + ++L     +H  ++ SG    ++S  + LISF+  S C+      R+ F 
Sbjct: 8   SQQLTRYAAAQALLPGAHLHASLLKSG---SLASFRNHLISFY--SKCRRPCCARRV-FD 61

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +I +P    W++L+  YS +  P+ A+  +  M ++G+   N F  P VL     +   +
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCC-NEFALPVVLKC---VPDAR 117

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGY 185
            G Q+H   +  G   D+F+ NAL+  Y  FG++++A +VF E    R+ VS+N L++ Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            +  +   A+ +F +M  S IQP  F F  + +ACT   +   G+Q HA+V + +G    
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR-MG-YDK 235

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++    A+++MY K G +++A  +F  M  S    +W+++ISG    G   R        
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDS-DVVSWNALISGCVLNGHDHR-------- 286

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                  A+EL  +M+  G+ P+  T+ ++L+AC G GA D G+
Sbjct: 287 -----------------------AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF-YKIPKNLKTVSLFNSIISGL 424
           ++H   I+      + ++   ++DMYAK   +D A  VF +   ++L    L N++ISG 
Sbjct: 324 QIHGFMIKANA-DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL---ILCNALISGC 379

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  G  + ++++F E+   GL  +  T   VL
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 186/401 (46%), Gaps = 46/401 (11%)

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++K G       RN LI FYS       A +VF+       VS+++L+  Y+ 
Sbjct: 23  GAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  A+  F  M+   +  + F    +      + D R+G Q HA+        GS++
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMAT--GFGSDV 135

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD- 306
            +  A++ MY   G M                                + AR++F++ D 
Sbjct: 136 FVANALVAMYGGFGFM--------------------------------DDARRVFNEADS 163

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +R+ VSW  ++S Y +      A+++FG+M   GI P E     V+ AC G   ++ G++
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   +  + + +++F   A++DMY K G +D A  +F K+P +   V  +N++ISG   
Sbjct: 224 VHAMVVR-MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS--DVVSWNALISGCVL 280

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +G    +I +  +M+  GL P+  T  ++L ACS  G  + G+Q    M+        ++
Sbjct: 281 NGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD-DY 339

Query: 487 YGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
            G  +VD+ A++  LD+A  +   M +  + ++  AL++ C
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/732 (33%), Positives = 404/732 (55%), Gaps = 70/732 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           +SL+A     ++L++  ++H  ++ +G    I   + L+  +A  G    L  ++ +F  
Sbjct: 14  TSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCG---SLDDAKRVFEG 70

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           ++  ++F W++++  Y+R+   + A+VLY  M+++G V PN  TF   L  CA ++    
Sbjct: 71  MEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEG-VEPNVVTFACALGGCASVAGLAD 129

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH  I+   +  D  ++++L++ Y     +  A KVFEG  AR++ SY  +I+ Y Q
Sbjct: 130 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 189

Query: 188 VKEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG-- 244
             E   AL LF +M     I+P+A+TF  +  A   L +   G++ H    ++L   G  
Sbjct: 190 AGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVH----RHLASRGFD 245

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +N++++ A++ MY KCG    A +VF +M  +++  +W+SMI+ Y + G  + A  LF +
Sbjct: 246 TNVVVQNALVTMYGKCGSPVEARKVFDSM-TARNVISWTSMIAAYAQHGNPQEALNLFKR 304

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           MD                                  + P  V+  + L AC  LGALD G
Sbjct: 305 MD----------------------------------VEPSGVSFSSALNACALLGALDEG 330

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF--NSIIS 422
           + +H + +E  +      + T+++ MYA+CGS+D A  VF +    +KT   F  N++I+
Sbjct: 331 REIHHRVVEAHLASPQ--METSLLSMYARCGSLDDARRVFNR----MKTRDAFSCNAMIA 384

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
              QHG  + ++ ++R ME  G+  DG+TFV+VL ACSH  LV + + FF+S+ +++G+ 
Sbjct: 385 AFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVV 444

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P +EHY CMVD+L R GRL +A  L+++MPY  ++V W  LL+ C+ H +   GE A +K
Sbjct: 445 PLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARK 504

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           + +L P     YV LSNM A   R+++AR+VRK M++ G+  P   SYIE +  LH F +
Sbjct: 505 VFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTS 564

Query: 602 SKKSHPQT-------KEIELMLKDMTMKLKSAGYVPNTVQVVFD----VDEEEKETVVSY 650
             +   Q        + +  +L ++   +K AGYVP+T +V  +      EEEK+  + +
Sbjct: 565 GGRDEQQEGHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCF 624

Query: 651 HSEKLALAFGLINSRSKE---TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           HSE+LA+A+GLI ++  +    +R+  + R+C DCH A KLLS+I  + I VRD  RFH 
Sbjct: 625 HSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHH 684

Query: 708 FKKGNCSCMDFW 719
           F+KG CSC D W
Sbjct: 685 FEKGACSCGDHW 696


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/703 (34%), Positives = 390/703 (55%), Gaps = 43/703 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           ++++   Q+H  +V  G +  + +++ L+  +   G  +    + ++F ++ + ++  WN
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVD---IASVIFEKMPDSDVVSWN 272

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            L+ G   +     A+ L   M   G+V PN FT   +L +C+   +F  G QIH  +IK
Sbjct: 273 ALISGCVLNGHDHRAIELLLQMKYSGLV-PNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              + D +I   L+  Y+   ++++A KVF+    RDL+  N LI+G +       AL L
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSL 391

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +++   +  +  T  A+  +   L      +Q HA+  K +G +    ++   +I+ Y
Sbjct: 392 FYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK-IGFIFDAHVV-NGLIDSY 449

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KC  ++ A RVF                                ++    D+++ T+MI
Sbjct: 450 WKCSCLSDANRVF--------------------------------EECSSGDIIACTSMI 477

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I+   F
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ-F 536

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F   A++  YAKCGSI+ A   F  +P+  + V  ++++I GLAQHG G+ ++ +F
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLPE--RGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M   G+ P+ +T  +VLCAC+H GLV+E K++F SM   +GI    EHY CM+DLL R
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+LD+A  L+ SMP+ AN+ IW ALL A R+H++ ++G++A +KL  LEP+    +VLL
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           +N  A    W E  +VRKLM DS I+K P  S+IE    +H F+   KSHP TKEI   L
Sbjct: 715 ANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
            ++   +  AG+VPN    + D+D  EKE ++S+HSE+LA+AF L+++     IR+ KNL
Sbjct: 775 VELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNL 834

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RIC DCH+AFK +S+I  REI++RD  RFH F+ G CSC D+W
Sbjct: 835 RICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 222/452 (49%), Gaps = 52/452 (11%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFS 66
           S  L    + ++L     +H  ++ SG    ++S  + LISF+  S C+     +R  F 
Sbjct: 8   SQQLTRYAAAQALLPGAHLHASLLKSG---SLASFRNHLISFY--SKCRRPCC-ARRFFD 61

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +I +P    W++L+  YS +  P+ A+  +  M ++G+   N F  P VL     +   +
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCC-NEFALPVVLKC---VPDAR 117

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGY 185
            G Q+H   +  G   D+F+ NAL+  Y  FG++++A +VF E    R+ VS+N L++ Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            +  +   A+ +F +M  S IQP  F F  + +ACT   +   G+Q HA+V + +G    
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR-MG-YDK 235

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++    A+++MY K G +++A  +F  M  S    +W+++ISG    G   R        
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDS-DVVSWNALISGCVLNGHDHR-------- 286

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                                  A+EL  +M+  G+ P+  T+ ++L+AC G GA D G+
Sbjct: 287 -----------------------AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF-YKIPKNLKTVSLFNSIISGL 424
           ++H   I+      + ++   ++DMYAK   +D A  VF +   ++L    L N++ISG 
Sbjct: 324 QIHGFMIKANA-DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL---ILCNALISGC 379

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  G  + ++++F E+   GL  +  T   VL
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 185/401 (46%), Gaps = 46/401 (11%)

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++K G       RN LI FYS       A + F+       VS+++L+  Y+ 
Sbjct: 23  GAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  A+  F  M+   +  + F    +      + D R+G Q HA+        GS++
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMAT--GFGSDV 135

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD- 306
            +  A++ MY   G M                                + AR++F++ D 
Sbjct: 136 FVANALVAMYGGFGFM--------------------------------DDARRVFNEADS 163

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +R+ VSW  ++S Y +      A+++FG+M   GI P E     V+ AC G   ++ G++
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   +  + + +++F   A++DMY K G +D A  +F K+P +   V  +N++ISG   
Sbjct: 224 VHAMVVR-MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS--DVVSWNALISGCVL 280

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +G    +I +  +M+  GL P+  T  ++L ACS  G  + G+Q    M+        ++
Sbjct: 281 NGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD-DY 339

Query: 487 YGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
            G  +VD+ A++  LD+A  +   M +  + ++  AL++ C
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 334/551 (60%), Gaps = 45/551 (8%)

Query: 178 YNTLINGYAQVK-EPC----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           +NTLI  + Q + +P       + +F +M+   +QPD  TF  +  +    +   +G+  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + +                                   G++      +S+IS Y+  
Sbjct: 87  HAQILR----------------------------------FGLAIDPFVQTSLISMYSSS 112

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH---PDEVTMV 349
           G ++ AR LF  M +R+++SW+ MI+GY + G + +AL LF +M+ LG++   P+E TM 
Sbjct: 113 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
            VL AC  LGAL+ GK  H  YI+      ++ L TA+IDMYAKCGS++ A  VF  +  
Sbjct: 173 GVLAACGRLGALEHGKWAHA-YIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 231

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
           N K V  ++++ISGLA HGL E  + +F +M   G++P+ VTF+ V CAC HGGLV EGK
Sbjct: 232 N-KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 290

Query: 470 QFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            +   M  +Y I P ++HYGCMVDL  R GR+ EA+ +++SMP + + ++W ALL+  R+
Sbjct: 291 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 350

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H + +  E+A +KL++LEP +   YVLLSN+ A+  RWE+ R VR LM+  GI+K PG S
Sbjct: 351 HGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCS 410

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
            IE  G LH F     SHP+T++I +ML+++  +LK  GYV NT +V+ D+DEE KE  +
Sbjct: 411 LIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELAL 470

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           S HSEKLALA+G + +     IRI KNLRIC DCH+A K++S+++ REI+VRD  RFH F
Sbjct: 471 SLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHF 530

Query: 709 KKGNCSCMDFW 719
            +G CSC D+W
Sbjct: 531 TQGLCSCRDYW 541



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 204/418 (48%), Gaps = 48/418 (11%)

Query: 74  FIWNTLMRGY----SRSDSPQEALV-LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           F+WNTL+R +    ++   P  + + ++  M   G V P+  TFPF+L S A  S    G
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHG-VQPDFHTFPFLLQSFASPSLLHLG 83

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H  I++FGL  D F++ +LI  YS  G ++ A  +F     R+++S++ +INGY + 
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRC 143

Query: 189 KEPCPALWLFRKMQ---DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VG 244
            +   AL LFR+MQ    + ++P+ FT   + +AC  L     GK  HA + K   C + 
Sbjct: 144 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDK---CGMP 200

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            +++L TA+I+MYAKCG +  A  VFS +G +K   AWS+MISG    G  E        
Sbjct: 201 VDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAE-------- 252

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
                                  + + LF KM + G+ P+ VT +AV  ACV  G +  G
Sbjct: 253 -----------------------ECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEG 289

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K   ++  E+      I     ++D+Y + G I  A +V   +P     V ++ +++SG 
Sbjct: 290 KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPME-PDVLVWGALLSGS 348

Query: 425 AQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
             HG  ET     +  +L+ L+P +   +V +    +  G  E+ +   + M   GIK
Sbjct: 349 RMHGDIETCELALK--KLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIK 404



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 173/371 (46%), Gaps = 26/371 (7%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL    S   L     +H QI+  GL       + LIS ++ SG  +    +R LF+ + 
Sbjct: 70  LLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVD---MARNLFAVMP 126

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI--VSPNNFTFPFVLNSCARLSSFKS 127
             N+  W+ ++ GY R    +EAL L+  M   G+  V PN FT   VL +C RL + + 
Sbjct: 127 ERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEH 186

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLINGYA 186
           G   H +I K G+  D+ +  ALI  Y+  G +  A  VF      +D+++++ +I+G A
Sbjct: 187 GKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLA 246

Query: 187 Q--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
              + E C  + LF KM +  ++P+A TF+A+F AC        GK +   + ++   + 
Sbjct: 247 MHGLAEEC--VGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSII- 303

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER---ARQL 301
             +     ++++Y + G +  A  V  +M M      W +++SG    G IE    A + 
Sbjct: 304 PTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKK 363

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
             +++  +  ++  + + Y++ G +     +   ME++GI           +   G   +
Sbjct: 364 LIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI-----------KKVPGCSLI 412

Query: 362 DFGKRLHQQYI 372
           + G  LH+ ++
Sbjct: 413 EVGGVLHEFFV 423


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/661 (35%), Positives = 376/661 (56%), Gaps = 43/661 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W  ++  +++    ++A+ L+  M   G V P+ FT+  VL++C  L 
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELG 245

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGYINNAHKVFEGSLARDLVSYNT 180
               G Q+H  +I+ GL  D+ +  +L+  Y+     G ++++ KVFE     +++S+  
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 181 LINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +I  Y Q  E    A+ LF KM    I+P+ F+F ++  AC  L+DP  G+Q ++   K 
Sbjct: 306 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK- 364

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                                            +G++      +S+IS Y R G++E AR
Sbjct: 365 ---------------------------------LGIASVNCVGNSLISMYARSGRMEDAR 391

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           + FD + +++LVS+ A++ GY++     +A  LF ++   GI     T  ++L     +G
Sbjct: 392 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 451

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           A+  G+++H + ++   +  N  +  A+I MY++CG+I+ A  VF ++    + V  + S
Sbjct: 452 AMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMED--RNVISWTS 508

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I+G A+HG    ++ +F +M   G KP+ +T+V VL ACSH G++ EG++ F SM   +
Sbjct: 509 MITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEH 568

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI P+MEHY CMVDLL R G L EA   I SMP  A++++WR LL ACR+H N ++G  A
Sbjct: 569 GIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA 628

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            + +L+ EPD  A Y+LLSN+ A   +W++  ++RK M +  + K  G S+IE    +HR
Sbjct: 629 AEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHR 688

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F   + SHPQ  +I   L  +  K+K  GY+P+T  V+ D++EE+KE  +  HSEK+A+A
Sbjct: 689 FHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVA 748

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGLI++   + IRI KNLR+CGDCH A K +S    REI+VRD+ RFH  K G CSC D+
Sbjct: 749 FGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDY 808

Query: 719 W 719
           W
Sbjct: 809 W 809



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 205/410 (50%), Gaps = 40/410 (9%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           ++++    P+  T+  +L SC R  +F+ G  +H  +++ GLE D  + N LI  YS  G
Sbjct: 16  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 75

Query: 159 YINNAHKVFEG-SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
               A  +FEG    RDLVS++ +++ +A       A+W F  M +    P+ + F A+ 
Sbjct: 76  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 135

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
            AC+  N   +G+  +  V K  G + +++ +   +I+M+ K                  
Sbjct: 136 RACSNANYAWVGEIIYGFVVKT-GYLEADVCVGCELIDMFVK------------------ 176

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                          G +  A ++FD+M +R+LV+WT MI+ ++Q+G    A++LF  ME
Sbjct: 177 -------------GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 223

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC--- 394
             G  PD  T  +VL AC  LG L  GK+LH + I  +    ++ +  +++DMYAKC   
Sbjct: 224 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAAD 282

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDGVTFV 453
           GS+D +  VF ++P++   V  + +II+   Q G   + +I +F +M    ++P+  +F 
Sbjct: 283 GSVDDSRKVFEQMPEH--NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFS 340

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           +VL AC +      G+Q +   +  GI         ++ + AR GR+++A
Sbjct: 341 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 390



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 262/525 (49%), Gaps = 49/525 (9%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+SC   ++ +    +H +++ SGL    +  + LIS ++  G       +R++F  + 
Sbjct: 32  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE---TARLIFEGMG 88

Query: 70  NP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           N  ++  W+ ++  ++ +    +A+  +  ML  G   PN + F  V+ +C+  +    G
Sbjct: 89  NKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY-PNEYCFAAVIRACSNANYAWVG 147

Query: 129 CQIHCHIIKFG-LEFDLFIRNALIH-FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
             I+  ++K G LE D+ +   LI  F    G + +A+KVF+    R+LV++  +I  +A
Sbjct: 148 EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFA 207

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q+     A+ LF  M+ S   PD FT+ ++ SACTEL    +GKQ H+ V + LG +  +
Sbjct: 208 QLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR-LG-LALD 265

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  ++++MYAKC                               +G ++ +R++F+QM 
Sbjct: 266 VCVGCSLVDMYAKCA-----------------------------ADGSVDDSRKVFEQMP 296

Query: 307 QRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           + +++SWTA+I+ Y Q G    +A+ELF KM S  I P+  +  +VL+AC  L     G+
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 356

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGL 424
           +++   ++  +   N  +  ++I MYA+ G ++ A   F  +  KNL +   +N+I+ G 
Sbjct: 357 QVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVS---YNAIVDGY 412

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A++   E +  +F E+   G+     TF ++L   +  G + +G+Q    +L  G K   
Sbjct: 413 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 472

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
                ++ + +R G ++ A+ +   M  D N + W +++     H
Sbjct: 473 CICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKH 516



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           +SS+L+       L    Q+H +++  GL   +     L+  +A       +  SR +F 
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293

Query: 67  QIDNPNIFIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           Q+   N+  W  ++  Y +S +  +EA+ L+  M+S G + PN+F+F  VL +C  LS  
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 352

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G Q++ + +K G+     + N+LI  Y+  G + +A K F+    ++LVSYN +++GY
Sbjct: 353 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 412

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +   A  LF ++ D+ I   AFTF ++ S    +     G+Q H  + K  G   S
Sbjct: 413 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK--GGYKS 470

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N  +  A+I+MY++CG +  A +VF+ M   ++  +W+SMI+G+ + G   RA ++F   
Sbjct: 471 NQCICNALISMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFH-- 527

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG- 364
                                        KM   G  P+E+T VAVL AC  +G +  G 
Sbjct: 528 -----------------------------KMLETGTKPNEITYVAVLSACSHVGMISEGQ 558

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           K  +  Y E+ +  R +     ++D+  + G +  A+     +P
Sbjct: 559 KHFNSMYKEHGIVPR-MEHYACMVDLLGRSGLLVEAMEFINSMP 601



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 9/297 (3%)

Query: 8   HSSLLALLESCKSLKQAL---QIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRI 63
           H S  ++L++C +L       Q++   V  G+   +   + LIS +A SG    +  +R 
Sbjct: 336 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG---RMEDARK 392

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N+  +N ++ GY+++   +EA +L+  +   GI   + FTF  +L+  A + 
Sbjct: 393 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIG 451

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G QIH  ++K G + +  I NALI  YS  G I  A +VF     R+++S+ ++I 
Sbjct: 452 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 511

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+A+      AL +F KM ++  +P+  T+VA+ SAC+ +     G++    +YK  G V
Sbjct: 512 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 571

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              M     ++++  + GL+  A    ++M +      W +++      G  E  R 
Sbjct: 572 -PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 627



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 17/245 (6%)

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
            VG    A      M      PD  T   +L++C+       GK +H++ +++ +   ++
Sbjct: 3   DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 62

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            L T +I +Y+KCG  +TA  +F  +      VS +++++S  A + +   +I  F +M 
Sbjct: 63  VLNT-LISLYSKCGDTETARLIFEGMGNKRDLVS-WSAMVSCFANNSMEWQAIWTFLDML 120

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLAR-DGR 499
            +G  P+   F  V+ ACS+      G+  +  ++  G        GC ++D+  +  G 
Sbjct: 121 ELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 180

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG--EIAGQKLLDLE-----PDHGAH 552
           L  AY +   MP + N V W  ++      R A++G    A    LD+E     PD   +
Sbjct: 181 LGSAYKVFDKMP-ERNLVTWTLMIT-----RFAQLGCARDAIDLFLDMELSGYVPDRFTY 234

Query: 553 YVLLS 557
             +LS
Sbjct: 235 SSVLS 239


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/637 (36%), Positives = 352/637 (55%), Gaps = 47/637 (7%)

Query: 89  PQEALVLYTSM--LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
           P   L+L TS   L    +  +   +  +L  C        G  +H HI++     D+ +
Sbjct: 38  PSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVM 97

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            N L++ Y+  G +  A KVFE    RD V++ TLI+GY+Q   PC AL  F +M     
Sbjct: 98  GNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGY 157

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
            P+ FT  ++  A         G Q H        CV               KCG     
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCCGHQLHGF------CV---------------KCGF---- 192

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                      +    S+++  YTR G ++ A+ +FD ++ R+ VSW A+I+G+++  G 
Sbjct: 193 ---------DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN----VVFGRNIF 382
            +ALELF  M   G  P   +  ++  AC   G L+ GK +H   I++    V F  N  
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L     DMYAK GSI  A  +F ++ K  + V  +NS+++  AQHG G+ ++  F EM  
Sbjct: 304 L-----DMYAKSGSIHDARKIFDRLAK--RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRR 356

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           +G++P+ ++F++VL ACSH GL++EG  ++E M   GI P+  HY  +VDLL R G L+ 
Sbjct: 357 VGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNR 416

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           A   I+ MP +  + IW+ALL ACR+H+N ++G  A + + +L+PD    +V+L N+ A 
Sbjct: 417 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 476

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             RW +A +VRK M +SG++K P  S++E    +H F+A+ + HPQ +EI    +++  K
Sbjct: 477 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 536

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +K  GYVP+T  V+  VD++E+E  + YHSEK+ALAF L+N+    TI I KN+R+CGDC
Sbjct: 537 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 596

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H A KL S++  REI+VRD  RFH FK GNCSC D+W
Sbjct: 597 HTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 220/478 (46%), Gaps = 53/478 (11%)

Query: 14  LLESCKSLKQALQ---IHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+ C   K  +Q   +H  I+ S   H I   + L++ +A  G    L  +R +F ++ 
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG---SLEEARKVFEKMP 122

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W TL+ GYS+ D P +AL+ +  ML  G  SPN FT   V+ + A       G 
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG-YSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+H   +K G + ++ + +AL+  Y+ +G +++A  VF+   +R+ VS+N LI G+A+  
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN---LGCVGSN 246
               AL LF+ M     +P  F++ ++F AC+       GK  HA + K+   L     N
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            LL     +MYAK G ++ A ++F  +   +   +W+S+++                   
Sbjct: 302 TLL-----DMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLT------------------- 336

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                        Y+Q G   +A+  F +M  +GI P+E++ ++VL AC   G LD G  
Sbjct: 337 ------------AYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            ++   ++ +        T V+D+  + G ++ AL    ++P    T +++ ++++    
Sbjct: 385 YYELMKKDGIVPEAWHYVT-VVDLLGRAGDLNRALRFIEEMPIE-PTAAIWKALLNACRM 442

Query: 427 HGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           H    T +  +    +  L PD     V +    + GG   +  +  + M   G+K +
Sbjct: 443 H--KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 498


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/563 (40%), Positives = 344/563 (61%), Gaps = 41/563 (7%)

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC--PALWLFRKM-QDSCIQPDAF 211
           S +G I+ A K+F      ++ S+N++I G +Q + P   P + LFRKM +     P+ F
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVI-LFRKMVRRGYPNPNTF 162

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T   +  AC+ ++    G+Q HA V K+    GS+  ++TA++N YAKC  + +A +VF 
Sbjct: 163 TMAFVLKACSIVSALEEGQQVHANVLKS--GFGSSPFVETALVNFYAKCEDIVLASKVF- 219

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                                          D++  R+LV+W+ MISGY+++G  ++AL 
Sbjct: 220 -------------------------------DEITDRNLVAWSTMISGYARIGLVNEALG 248

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF  M+  G+ PDEVTMV+V+ AC   GALD GK +H  YI   +   ++ L+TA+++MY
Sbjct: 249 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA-YINKQLIETDLELSTALVNMY 307

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKCG I+ A  VF  +P  +K    ++S+I GLA +GL E ++  F  ME   +KP+ VT
Sbjct: 308 AKCGCIERAKEVFDAMP--VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 365

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F+ VL AC+H GLV EG++++ SML +GI P ME YGCMVDLL R   +++A  L+++MP
Sbjct: 366 FIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMP 425

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
              N VIWR LL  C+  +N    E+  Q+LL+LEP +  +Y+LLSN+ A   +WE+  Q
Sbjct: 426 ISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQ 485

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRK M   GI+  PG S IE +G +H F+    SHP+  E+  +L+D++ ++ + G+ P 
Sbjct: 486 VRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPG 545

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
              V+ +V +EEKE  +  HSE+LA+A+GL+ +++   IRI KNLR+CGDCH   K++S 
Sbjct: 546 ISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISA 605

Query: 692 IYRREIMVRDAIRFHLFKKGNCS 714
            YRREI+VRD +RFH F  G+CS
Sbjct: 606 EYRREIIVRDRVRFHKFVNGSCS 628



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 226/437 (51%), Gaps = 48/437 (10%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISS-----SQLISFFALSGCKNGLFRSRILFSQI 68
           L+  C+S++   QIH +++   +   ISS      ++I F ALS   + +  +R LFSQI
Sbjct: 63  LIRKCRSMRVLRQIHARLLTHAMP--ISSISFGLCKIIGFCALSPYGD-IDYARKLFSQI 119

Query: 69  DNPNIFIWNTLMRGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             PNIF WN+++RG S+S +P +E ++L+  M+ +G  +PN FT  FVL +C+ +S+ + 
Sbjct: 120 QRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEE 179

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H +++K G     F+  AL++FY+    I  A KVF+    R+LV+++T+I+GYA+
Sbjct: 180 GQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYAR 239

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
           +     AL LFR MQ + + PD  T V++ SAC        GK  HA + K L  + +++
Sbjct: 240 IGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL--IETDL 297

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            L TA++NMYAKCG +  A+ VF  M + K T AWSSMI G    G  E           
Sbjct: 298 ELSTALVNMYAKCGCIERAKEVFDAMPV-KDTKAWSSMIVGLAINGLAE----------- 345

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                ALE F +ME   + P+ VT + VL AC   G +  G+R 
Sbjct: 346 --------------------DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRY 385

Query: 368 HQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
               +E   FG   ++ L   ++D+  +   ++ A ++   +P +   V     ++    
Sbjct: 386 WSSMLE---FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKK 442

Query: 426 QHGLGETSIAVFREMEL 442
              L ++ +   R +EL
Sbjct: 443 SKNLDKSEVVAQRLLEL 459


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/728 (34%), Positives = 385/728 (52%), Gaps = 56/728 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFAL-SGCKNGLF 59
           ++R  +  + L+         K+A ++  Q+   G     +    ++F  L SGC     
Sbjct: 105 VERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG-----TEPDYVTFVTLLSGCNGHEM 159

Query: 60  RSRILFSQID------NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
            ++I   Q        +  + + NTL+  Y +S+    A  L+  M        ++FTF 
Sbjct: 160 GNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM-----PEIDSFTFA 214

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            VL +   L     G QIH  +IK    +++F+ NAL+ FYS    + +A K+F+    +
Sbjct: 215 AVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQ 274

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           D VSYN +I+GYA   +   A  LFR++Q +      F F  M S  +   D  +G+Q H
Sbjct: 275 DGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIH 334

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A     +    S +L+  ++++MYAKCG                                
Sbjct: 335 AQTI--VTTADSEILVGNSLVDMYAKCG-------------------------------- 360

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
           K E A  +F  +  R  V WTAMIS Y Q G + + L+LF KM    +  D+ T  ++LR
Sbjct: 361 KFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLR 420

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           A   + +L  GK+LH  +I    F  N+F  +A++D+YAKCGSI  A+  F ++P   + 
Sbjct: 421 ASASIASLSLGKQLHS-FIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD--RN 477

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           +  +N++IS  AQ+G  E ++  F+EM L GL+PD V+F+ VL ACSH GLVEEG   F 
Sbjct: 478 IVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFN 537

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM   Y + P+ EHY  +VD+L R GR +EA  L+  MP D + ++W ++L ACR+H+N 
Sbjct: 538 SMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQ 597

Query: 533 KIGEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
           ++   A  +L ++E     A YV +SN+ A   +WE   +V K M D G++K P +S++E
Sbjct: 598 ELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVE 657

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
                H F A+ + HPQ +EI   +  +T  ++  GY P+T   + + DE+ K   + YH
Sbjct: 658 IKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYH 717

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+AF LI++     I + KNLR C DCH A K++S+I  REI VRD+ RFH F+ G
Sbjct: 718 SERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDG 777

Query: 712 NCSCMDFW 719
            CSC DFW
Sbjct: 778 FCSCGDFW 785



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 187/414 (45%), Gaps = 44/414 (10%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           N +I  Y   G +  A K+F+G + R  V++  LI GY+Q+ +   A  LF +MQ    +
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYK--NLGCVGSNMLLKTAVINMYAKCGLMNM 265
           PD  TFV + S C   N   +G Q   V  +   LG   S +++   +++ Y K   +++
Sbjct: 142 PDYVTFVTLLSGC---NGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRLDL 197

Query: 266 AERVFSTM----------------GMS-------------KSTAAWSSMISG-----YTR 291
           A ++F  M                G+              K+   W+  +S      Y++
Sbjct: 198 ACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 257

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
              +  AR+LFD+M ++D VS+  +ISGY+  G    A +LF +++       +     +
Sbjct: 258 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM 317

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L         + G+++H Q I        I +  +++DMYAKCG  + A  +F  +    
Sbjct: 318 LSIASNTLDWEMGRQIHAQTIVTTA-DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTH-- 374

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           ++   + ++IS   Q G  E  + +F +M    +  D  TF ++L A +    +  GKQ 
Sbjct: 375 RSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL 434

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              ++  G    +     ++D+ A+ G + +A    Q MP D N V W A+++A
Sbjct: 435 HSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 487



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 152/334 (45%), Gaps = 69/334 (20%)

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           + K G ++ A ++F  M   K+T + + MISGY + G +  AR+LFD M +R  V+WT +
Sbjct: 57  FLKNGELSQARQLFEKMP-HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTIL 115

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----------------LG- 359
           I GYSQ+  F +A ELF +M+  G  PD VT V +L  C G                LG 
Sbjct: 116 IGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGY 175

Query: 360 ------------------ALDFGKRLHQQY-----------------IENVVFGRNI--- 381
                              LD   +L ++                  ++++V G+ I   
Sbjct: 176 DSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSF 235

Query: 382 ----------FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
                     F++ A++D Y+K  S+  A  +F ++P+    VS +N IISG A  G  +
Sbjct: 236 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQ-DGVS-YNVIISGYAWDGKHK 293

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            +  +FRE++          F T+L   S+    E G+Q     +      ++     +V
Sbjct: 294 YAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLV 353

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           D+ A+ G+ +EA  +  ++ + + +V W A+++A
Sbjct: 354 DMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMISA 386


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/657 (36%), Positives = 376/657 (57%), Gaps = 17/657 (2%)

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+  W  L+ G  ++    EAL ++  M+ +G V PN+ T    +++C  LS  + G +
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-VKPNSITIASAVSACTNLSLLRHGRE 383

Query: 131 IHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           IH + IK   L+ DL + N+L+ +Y+    +  A + F      DLVS+N ++ GYA   
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ L  +M+   I+PD  T+  + +  T+  D +   +F    ++ +  +G +   
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEF----FQRMHSMGMDPN- 498

Query: 250 KTAVINMYAKCGLMNMAERVFSTMG------MSKSTAAWSSMISGYTREGKIERARQLFD 303
            T +    A CG +   +      G      +  ST   S++IS Y+    +E A  +F 
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFS 558

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           ++  RD+V W ++IS  +Q G    AL+L  +M    +  + VTMV+ L AC  L AL  
Sbjct: 559 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 618

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +HQ  I   +   N F+  ++IDMY +CGSI  +  +F  +P+  + +  +N +IS 
Sbjct: 619 GKEIHQFIIRCGLDTCN-FILNSLIDMYGRCGSIQKSRRIFDLMPQ--RDLVSWNVMISV 675

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
              HG G  ++ +F++   MGLKP+ +TF  +L ACSH GL+EEG ++F+ M   Y + P
Sbjct: 676 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDP 735

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
            +E Y CMVDLL+R G+ +E    I+ MP++ N+ +W +LL ACR+H N  + E A + L
Sbjct: 736 AVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYL 795

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            +LEP    +YVL++N+ +   RWE+A ++R LM + G+ KPPG S+IE    LH F+  
Sbjct: 796 FELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVG 855

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
             SHP  ++I   ++ +   +K  GYVP+T  V+ DVDE+EKE  +  HSEK+ALAFGLI
Sbjct: 856 DTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLI 915

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++ +   +RI KNLR+CGDCH A K +S++ +R+I++RD  RFH F  G CSC D+W
Sbjct: 916 STTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 258/539 (47%), Gaps = 70/539 (12%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F +I+  ++F+WN ++ GY+     ++AL   + M   G V P+  T+        
Sbjct: 244 ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSG-VKPDQVTW-------- 294

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF--EGSLAR---DL 175
                                      NA+I  Y+  G    A K F   G L     ++
Sbjct: 295 ---------------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           VS+  LI G  Q      AL +FRKM    ++P++ T  +  SACT L+  R G++ H  
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST--AAWSSMISGYTREG 293
             K +  + S++L+  ++++ YAKC  + +A R F   GM K T   +W++M++GY   G
Sbjct: 388 CIK-VEELDSDLLVGNSLVDYYAKCRSVEVARRKF---GMIKQTDLVSWNAMLAGYALRG 443

Query: 294 KIERARQLFDQMD----QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
             E A +L  +M     + D+++W  +++G++Q G    ALE F +M S+G+ P+  T+ 
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTIS 503

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT----AVIDMYAKCGSIDTALSVFY 405
             L AC  +  L  GK +H   + N     +I L+T    A+I MY+ C S++ A SVF 
Sbjct: 504 GALAACGQVRNLKLGKEIHGYVLRN-----HIELSTGVGSALISMYSGCDSLEVACSVFS 558

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++  + + V ++NSIIS  AQ G    ++ + REM L  ++ + VT V+ L ACS    +
Sbjct: 559 EL--STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAAL 616

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +GK+  + ++  G+         ++D+  R G + ++  +   MP   + V W  +++ 
Sbjct: 617 RQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISV 675

Query: 526 CRLHRNA--KIGEIAGQKLLDLEPDHGAHYVLL-----SNMLAETYRWEEARQVRKLMD 577
             +H      +      + + L+P+H     LL     S ++ E +++ +  +    MD
Sbjct: 676 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMD 734



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/513 (25%), Positives = 233/513 (45%), Gaps = 97/513 (18%)

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR 147
           +P E + +Y S+L K                C +L + + G Q+H  ++  G++   F+ 
Sbjct: 84  NPDECIEIYASILQK----------------CRKLYNLRLGFQVHAQLVVNGVDVCEFLG 127

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           + L+  Y   G + +A ++F+    R++ S+  ++  Y  + +    + LF  M +  ++
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 187

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLMNM 265
           PD F F  +F AC+EL + R+GK     VY  +  +G   N  +K ++++M+ KCG M++
Sbjct: 188 PDHFVFPKVFKACSELKNYRVGKD----VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDI 243

Query: 266 AERVFSTM----------------------------------GMSKSTAAWSSMISGYTR 291
           A R F  +                                  G+      W+++ISGY +
Sbjct: 244 ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQ 303

Query: 292 EGKIERARQLFDQMD-----QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
            G+ E A + F +M      + ++VSWTA+I+G  Q G   +AL +F KM   G+ P+ +
Sbjct: 304 SGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSI 363

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T+ + + AC  L  L  G+ +H   I+      ++ +  +++D YAKC S++ A   F  
Sbjct: 364 TIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM 423

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           I K    VS +N++++G A  G  E +I +  EM+  G++PD +T+  ++   +  G  +
Sbjct: 424 I-KQTDLVS-WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGK 481

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
              +FF+ M                                 SM  D N+      LAAC
Sbjct: 482 AALEFFQRM--------------------------------HSMGMDPNTTTISGALAAC 509

Query: 527 RLHRNAKIG-EIAGQKLLD-LEPDHGAHYVLLS 557
              RN K+G EI G  L + +E   G    L+S
Sbjct: 510 GQVRNLKLGKEIHGYVLRNHIELSTGVGSALIS 542



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 180/424 (42%), Gaps = 73/424 (17%)

Query: 21  LKQALQIHGQI--VHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           L+   +IHG    V    +  +  + L+ ++A   C++ +  +R  F  I   ++  WN 
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYA--KCRS-VEVARRKFGMIKQTDLVSWNA 434

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGI---------------------------------- 104
           ++ GY+   S +EA+ L + M  +GI                                  
Sbjct: 435 MLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMG 494

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           + PN  T    L +C ++ + K G +IH ++++  +E    + +ALI  YS    +  A 
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVAC 554

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            VF     RD+V +N++I+  AQ      AL L R+M  S ++ +  T V+   AC++L 
Sbjct: 555 SVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLA 614

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
             R GK+ H  + +  G    N +L + +I+MY +CG +  + R+F              
Sbjct: 615 ALRQGKEIHQFIIR-CGLDTCNFILNS-LIDMYGRCGSIQKSRRIF-------------- 658

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                             D M QRDLVSW  MIS Y   G    A+ LF +  ++G+ P+
Sbjct: 659 ------------------DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
            +T   +L AC   G ++ G +  +           +     ++D+ ++ G  +  L   
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 405 YKIP 408
            K+P
Sbjct: 761 EKMP 764



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 173/371 (46%), Gaps = 57/371 (15%)

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           D CI+     + ++   C +L + R+G Q HA +                V+N    C  
Sbjct: 86  DECIE----IYASILQKCRKLYNLRLGFQVHAQL----------------VVNGVDVCEF 125

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +                   S ++  Y + G +E AR++FD+M +R++ SWTA++  Y  
Sbjct: 126 LG------------------SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
           +G + + ++LF  M + G+ PD      V +AC  L     GK ++  Y+ ++ F  N  
Sbjct: 168 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY-DYMLSIGFEGNSC 226

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +  +++DM+ KCG +D A   F +I    K V ++N ++SG    G  + ++    +M+L
Sbjct: 227 VKGSILDMFIKCGRMDIARRFFEEI--EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLD 501
            G+KPD VT+  ++   +  G  EE  ++F  M      KP +  +  ++    ++G   
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 502 EAYGLIQSMPYDA---NSVIWRALLAAC---RLHRNAKIGEIAGQ--KLLDLEPDHGAHY 553
           EA  + + M  +    NS+   + ++AC    L R+ +  EI G   K+ +L+ D     
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR--EIHGYCIKVEELDSD----- 397

Query: 554 VLLSNMLAETY 564
           +L+ N L + Y
Sbjct: 398 LLVGNSLVDYY 408


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/717 (35%), Positives = 405/717 (56%), Gaps = 50/717 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +L+  L  C +++QA  IH  +  SGL    + S+ L S +A  G    L++++ +F + 
Sbjct: 230 TLVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLG---HLYQAKEVFDRA 286

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++  WN ++  Y++     EA +L+  ML +GI SP+  T    +N+    SS + G
Sbjct: 287 AERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI-SPSKVTL---VNASTGCSSLRFG 342

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH   ++ GL+ D+ + NAL+  Y+  G    A  +F+  +  + VS+NT+I G +Q 
Sbjct: 343 RMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFK-RIPCNAVSWNTMIAGSSQK 401

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT----ELNDPRIGKQFHAVVYKNLGC-V 243
            +   A+ LF++MQ   + P   T++ +  A      E      G++ H+ +   + C  
Sbjct: 402 GQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRI---VSCGY 458

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S   + TAV+ MYA CG ++ A   F    M                            
Sbjct: 459 ASEPAIGTAVVKMYASCGAIDEAAASFQRGAME--------------------------- 491

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
             D+ D+VSW A+IS  SQ G   +AL  F +M+  G+ P+++T VAVL AC G  AL  
Sbjct: 492 --DRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTE 549

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+ +H  ++ +     N+F+ TA+  MY +CGS+++A  +F K+    + V +FN++I+ 
Sbjct: 550 GEIVHD-HLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVE-RDVVIFNAMIAA 607

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKP 482
            +Q+GL   ++ +F  M+  G +PD  +FV+VL ACSHGGL +EG + F SM  +YGI P
Sbjct: 608 YSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAP 667

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
             +HY C VD+L R G L +A  LI+ M      ++W+ LL ACR +R+   G +A   +
Sbjct: 668 SEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMV 727

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            +L+P   + YV+LSN+LA   +W+EA +VR  M+  G++K  G S+IE    +H F+A 
Sbjct: 728 RELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAG 787

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            +SHP+++EI   L+ +  +++  GYVP+T  V+  VDE EKE ++  HSE+LA+A G++
Sbjct: 788 DRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVM 847

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S S +T+R+ KNLR+C DCH A K +S+I  +EI+VRD  RFH F  G+CSC D+W
Sbjct: 848 SS-STDTVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/576 (25%), Positives = 264/576 (45%), Gaps = 84/576 (14%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           L Q  +IH +IV  GL   + +  L  +     C++ L     +FS+++  +   W T++
Sbjct: 45  LSQGRRIHARIVSLGLEEELGNHLLRLYLK---CES-LGDVEEVFSRLEVRDEASWTTII 100

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
             Y+     + A+ ++  M  +G V  +  TF  VL +CARL     G  IH  I++ GL
Sbjct: 101 TAYTEHGQAKRAIGMFHRMQQEG-VRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGL 159

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           +    + N L+H Y   G + +A  +FE  + RDLVS+N  I   AQ  +   AL LF++
Sbjct: 160 KGKSVLANLLLHIYGSCGCVASAMLLFE-KMERDLVSWNAAIAANAQSGDLGIALELFQR 218

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           MQ   ++P   T V   + C  +   R  +  H +V ++   +   +++ TA+ + YA+ 
Sbjct: 219 MQLEGVRPARITLVIALTVCATI---RQAQAIHFIVRES--GLEQTLVVSTALASAYARL 273

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ------------- 307
           G +  A+ VF      +   +W++M+  Y + G +  A  LF +M               
Sbjct: 274 GHLYQAKEVFDR-AAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNA 332

Query: 308 -----------------------RDLVSWTAMISGYSQVG-------------------- 324
                                  RD+V   A++  Y++ G                    
Sbjct: 333 STGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVSWN 392

Query: 325 ----GFSQ------ALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQ 370
               G SQ      A+ELF +M+  G+ P   T + +L A         A+  G++LH +
Sbjct: 393 TMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR 452

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKTVSLFNSIISGLAQHGL 429
            + +  +     + TAV+ MYA CG+ID A + F +   ++   V  +N+IIS L+QHG 
Sbjct: 453 IV-SCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGH 511

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
           G+ ++  FR M+L G+ P+ +T V VL AC+    + EG+   + + + G++  +     
Sbjct: 512 GKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATA 571

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +  +  R G L+ A  + + +  + + VI+ A++AA
Sbjct: 572 LASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           ++F +++ RD  SWT +I+ Y++ G   +A+ +F +M+  G+  D VT +AVL+AC  LG
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L  G+ +H   +E+ + G+++ L   ++ +Y  CG + +A+ +F K+ ++L +   +N+
Sbjct: 143 DLSQGRSIHAWIVESGLKGKSV-LANLLLHIYGSCGCVASAMLLFEKMERDLVS---WNA 198

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
            I+  AQ G    ++ +F+ M+L G++P  +T V  L  C+    + + +     +   G
Sbjct: 199 AIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRESG 255

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           ++  +     +    AR G L +A  +      + + V W A+L A   H
Sbjct: 256 LEQTLVVSTALASAYARLGHLYQAKEVFDRAA-ERDVVSWNAMLGAYAQH 304


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 278/761 (36%), Positives = 401/761 (52%), Gaps = 98/761 (12%)

Query: 36  LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVL 95
           L  HIS  QL    AL+         R +F +I  P+   +N L+R YS       A+ L
Sbjct: 41  LEQHISRGQL----ALA---------RQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDL 87

Query: 96  YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
           Y SML +  V+PN +TFPFVL +C+ L   ++G  IH H    GL  DLF+  ALI  Y 
Sbjct: 88  YRSML-RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYI 146

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPDAFTFV 214
                  A  VF     RD+V++N ++ GYA       A+     MQD   ++P+A T V
Sbjct: 147 RCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLV 206

Query: 215 AMFS--------------------ACTELNDPRI------------GKQFHAVVYKNLGC 242
           ++                      AC E N+ ++             KQ         G 
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTM----------------------------- 273
              N +  +A+I  +  C  M  A  +F  M                             
Sbjct: 267 PVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMG 326

Query: 274 ----------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                     G+     A +S++S Y + G I  A   FD++  +D +S+ A++SG  Q 
Sbjct: 327 TQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQN 386

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A  +F KM++  + PD  TMV+++ AC  L AL  GK  H       V  R + L
Sbjct: 387 GKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSH-----GSVIIRGLAL 441

Query: 384 TTAV----IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
            T++    IDMYAKCG ID +  VF K+P   + V  +N++I+G   HGLG+ +  +F  
Sbjct: 442 ETSICNSLIDMYAKCGKIDLSRQVFDKMPA--RDVVSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           M+  G  PD VTF+ ++ ACSH GLV EGK +F++M + YGI P+MEHY CMVDLLAR G
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGG 559

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
            LDEAY  IQSMP  A+  +W ALL ACR+H+N  +G+   + +  L P+   ++VLLSN
Sbjct: 560 LLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSN 619

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + +   R++EA +VR +    G +K PG+S+IE NG+LH F+   +SHP +++I   L +
Sbjct: 620 IFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDN 679

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           + + +K  GY  +T  V+ D++EEEKE  + YHSEKLA+AFG+++    +TI +TKNLR+
Sbjct: 680 IMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRV 739

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CGDCH A K ++ +  R I+VRD  RFH FK G CSC +FW
Sbjct: 740 CGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 209/468 (44%), Gaps = 49/468 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH----ISSSQLISFFALSGCKNGLFRSRILF 65
           SLL LL    +L Q   IH   + + L  +    +  + L+  +A   CK  ++  R+ F
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYA--KCKQLVYACRV-F 263

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   N   W+ L+ G+   D   EA  L+  ML +G+   +  +    L  CA L+  
Sbjct: 264 HGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADL 323

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G Q+H  I K G+  DL   N+L+  Y+  G IN A   F+    +D +SY  L++G 
Sbjct: 324 HMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH-AVVYKNLGCVG 244
            Q  +   A  +F+KMQ   ++PD  T V++  AC+ L   + GK  H +V+ + L    
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET 443

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S   +  ++I+MYAKCG ++++ +VF  M  ++   +W++MI+GY               
Sbjct: 444 S---ICNSLIDMYAKCGKIDLSRQVFDKMP-ARDVVSWNTMIAGY--------------- 484

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
                         G   +G   +A  LF  M++ G  PD+VT + ++ AC   G +  G
Sbjct: 485 --------------GIHGLG--KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEG 528

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT-VSLFNSIISG 423
           K               +     ++D+ A+ G +D A      +P  LK  V ++ +++  
Sbjct: 529 KHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMP--LKADVRVWGALLGA 586

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQ 470
              H   +    V R ++ +G  P+G   FV +    S  G  +E  +
Sbjct: 587 CRIHKNIDLGKQVSRIIQKLG--PEGTGNFVLLSNIFSAAGRFDEAAE 632



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 8/253 (3%)

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K    W   +  +   G++  ARQ+FD++   D  ++ A+I  YS +G F  A++L+  M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
               + P++ T   VL+AC  L  L  G+ +H       +   ++F++TA+ID+Y +C  
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLH-TDLFVSTALIDLYIRCAR 150

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTV 455
              A +VF K+P  ++ V  +N++++G A HG+   +IA   +M+   GL+P+  T V++
Sbjct: 151 FGPARNVFAKMP--MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSL 208

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHY---GCMVDLLARDGRLDEAYGLIQSMPY 512
           L   +  G + +G       L   ++   E       ++D+ A+  +L  A  +   MP 
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV 268

Query: 513 DANSVIWRALLAA 525
             N V W AL+  
Sbjct: 269 -RNDVTWSALIGG 280



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 6   LEHSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRS 61
           L  +S+ + L  C SL       Q+H  I  SG++  +++S  L+S +A +G  N    +
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN---EA 361

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            + F +I   +   +  L+ G  ++   +EA +++  M +  +  P+  T   ++ +C+ 
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNM-EPDIATMVSLIPACSH 420

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L++ + G   H  +I  GL  +  I N+LI  Y+  G I+ + +VF+   ARD+VS+NT+
Sbjct: 421 LAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTM 480

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I GY        A  LF  M++    PD  TF+ + +AC+       GK +   +    G
Sbjct: 481 IAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ- 300
            +   M     ++++ A+ GL++ A +   +M +      W +++        I+  +Q 
Sbjct: 541 IL-PRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 301 --LFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
             +  ++      ++  + + +S  G F +A E+
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEV 633


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 278/761 (36%), Positives = 401/761 (52%), Gaps = 98/761 (12%)

Query: 36  LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVL 95
           L  HIS  QL    AL+         R +F +I  P+   +N L+R YS       A+ L
Sbjct: 41  LEQHISRGQL----ALA---------RQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDL 87

Query: 96  YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
           Y SML +  V+PN +TFPFVL +C+ L   ++G  IH H    GL  DLF+  ALI  Y 
Sbjct: 88  YRSML-RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYI 146

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPDAFTFV 214
                  A  VF     RD+V++N ++ GYA       A+     MQD   ++P+A T V
Sbjct: 147 RCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLV 206

Query: 215 AMFS--------------------ACTELNDPRI------------GKQFHAVVYKNLGC 242
           ++                      AC E N+ ++             KQ         G 
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTM----------------------------- 273
              N +  +A+I  +  C  M  A  +F  M                             
Sbjct: 267 PVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMG 326

Query: 274 ----------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                     G+     A +S++S Y + G I  A   FD++  +D +S+ A++SG  Q 
Sbjct: 327 TQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQN 386

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A  +F KM++  + PD  TMV+++ AC  L AL  GK  H       V  R + L
Sbjct: 387 GKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSH-----GSVIIRGLAL 441

Query: 384 TTAV----IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
            T++    IDMYAKCG ID +  VF K+P   + V  +N++I+G   HGLG+ +  +F  
Sbjct: 442 ETSICNSLIDMYAKCGKIDLSRQVFDKMPA--RDVVSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDG 498
           M+  G  PD VTF+ ++ ACSH GLV EGK +F++M + YGI P+MEHY CMVDLLAR G
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGG 559

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
            LDEAY  IQSMP  A+  +W ALL ACR+H+N  +G+   + +  L P+   ++VLLSN
Sbjct: 560 LLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSN 619

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + +   R++EA +VR +    G +K PG+S+IE NG+LH F+   +SHP +++I   L +
Sbjct: 620 IFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDN 679

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           + + +K  GY  +T  V+ D++EEEKE  + YHSEKLA+AFG+++    +TI +TKNLR+
Sbjct: 680 IMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRV 739

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CGDCH A K ++ +  R I+VRD  RFH FK G CSC +FW
Sbjct: 740 CGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 209/468 (44%), Gaps = 49/468 (10%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH----ISSSQLISFFALSGCKNGLFRSRILF 65
           SLL LL    +L Q   IH   + + L  +    +  + L+  +A   CK  ++  R+ F
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYA--KCKQLVYACRV-F 263

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +   N   W+ L+ G+   D   EA  L+  ML +G+   +  +    L  CA L+  
Sbjct: 264 HGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADL 323

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G Q+H  I K G+  DL   N+L+  Y+  G IN A   F+    +D +SY  L++G 
Sbjct: 324 HMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH-AVVYKNLGCVG 244
            Q  +   A  +F+KMQ   ++PD  T V++  AC+ L   + GK  H +V+ + L    
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET 443

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S   +  ++I+MYAKCG ++++ +VF  M  ++   +W++MI+GY               
Sbjct: 444 S---ICNSLIDMYAKCGKIDLSRQVFDKMP-ARDVVSWNTMIAGY--------------- 484

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
                         G   +G   +A  LF  M++ G  PD+VT + ++ AC   G +  G
Sbjct: 485 --------------GIHGLG--KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEG 528

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT-VSLFNSIISG 423
           K               +     ++D+ A+ G +D A      +P  LK  V ++ +++  
Sbjct: 529 KHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMP--LKADVRVWGALLGA 586

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQ 470
              H   +    V R ++ +G  P+G   FV +    S  G  +E  +
Sbjct: 587 CRIHKNIDLGKQVSRIIQKLG--PEGTGNFVLLSNIFSAAGRFDEAAE 632



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 8/253 (3%)

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K    W   +  +   G++  ARQ+FD++   D  ++ A+I  YS +G F  A++L+  M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
               + P++ T   VL+AC  L  L  G+ +H       +   ++F++TA+ID+Y +C  
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLH-TDLFVSTALIDLYIRCAR 150

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTV 455
              A +VF K+P  ++ V  +N++++G A HG+   +IA   +M+   GL+P+  T V++
Sbjct: 151 FGPARNVFAKMP--MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSL 208

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHY---GCMVDLLARDGRLDEAYGLIQSMPY 512
           L   +  G + +G       L   ++   E       ++D+ A+  +L  A  +   MP 
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV 268

Query: 513 DANSVIWRALLAA 525
             N V W AL+  
Sbjct: 269 -RNDVTWSALIGG 280



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 6   LEHSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQ-LISFFALSGCKNGLFRS 61
           L  +S+ + L  C SL       Q+H  I  SG++  +++S  L+S +A +G  N    +
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN---EA 361

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            + F +I   +   +  L+ G  ++   +EA +++  M +  +  P+  T   ++ +C+ 
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNM-EPDIATMVSLIPACSH 420

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L++ + G   H  +I  GL  +  I N+LI  Y+  G I+ + +VF+   ARD+VS+NT+
Sbjct: 421 LAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTM 480

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I GY        A  LF  M++    PD  TF+ + +AC+       GK +   +    G
Sbjct: 481 IAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ- 300
            +   M     ++++ A+ GL++ A +   +M +      W +++        I+  +Q 
Sbjct: 541 IL-PRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 301 --LFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
             +  ++      ++  + + +S  G F +A E+
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEV 633


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 402/713 (56%), Gaps = 49/713 (6%)

Query: 14  LLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L++C  L   +  ++IH      GL   +   + L+ F+A  G    L  ++ LFS + 
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI---LVEAQRLFSSMS 171

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + ++  WN ++ G S      +A+ L   M  +GI  PN+ T   VL +     +   G 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGHGK 230

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +H + ++   +  + +   L+  Y+    +  A K+F+    R+ VS++ +I GY    
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 290

Query: 190 EPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
               AL LF +M  +D+ + P   T  ++  AC +L D   G++ H  + K LG V  ++
Sbjct: 291 CMKEALELFDQMILKDA-MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-LGSV-LDI 347

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           LL   +++MYAKCG+                                I+ A + FD+M+ 
Sbjct: 348 LLGNTLLSMYAKCGV--------------------------------IDDAIRFFDEMNP 375

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D VS++A++SG  Q G  + AL +F  M+  GI PD  TM+ VL AC  L AL  G   
Sbjct: 376 KDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCS 435

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  Y+    F  +  +  A+IDMY+KCG I  A  VF ++ ++   +  +N++I G   H
Sbjct: 436 HG-YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH--DIVSWNAMIIGYGIH 492

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           GLG  ++ +F ++  +GLKPD +TF+ +L +CSH GLV EG+ +F++M  ++ I P+MEH
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
             CMVD+L R G +DEA+  I++MP++ +  IW ALL+ACR+H+N ++GE   +K+  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+   ++VLLSN+ +   RW++A  +R    D G++K PG S+IE NG +H F+   +SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            Q  +I   L+++ +++K  GY      V  DV+EEEKE ++ YHSEKLA+AFG++N ++
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKA 732

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              I +TKNLR+CGDCH A K ++ I +REI VRDA RFH FK G C+C DFW
Sbjct: 733 GRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 275/553 (49%), Gaps = 47/553 (8%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           L LLE+C   KSL +A +IH   + +  N   S    ++   LS   N +  +R LF +I
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC--NQVVLARRLFDEI 69

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            NP++ +WN ++R Y+ +     A+ LY SML  G V PN +T+PFVL +C+ L + + G
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDG 128

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH H   FGLE D+F+  AL+ FY+  G +  A ++F     RD+V++N +I G +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ L  +MQ+  I P++ T V +     E      GK  H    +      + ++
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR--SFDNGVV 246

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + T +++MYAKC  +  A ++F  MG+ ++  +WS+MI GY     ++ A +LFDQM  +
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGV-RNEVSWSAMIGGYVASDCMKEALELFDQMILK 305

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D                               + P  VT+ +VLRAC  L  L  G++LH
Sbjct: 306 D------------------------------AMDPTPVTLGSVLRACAKLTDLSRGRKLH 335

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             YI  +    +I L   ++ MYAKCG ID A+  F ++  N K    F++I+SG  Q+G
Sbjct: 336 -CYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEM--NPKDSVSFSAIVSGCVQNG 392

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               ++++FR M+L G+ PD  T + VL ACSH   ++ G      ++  G         
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 452

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNA--KIGEIAGQKLLDL 545
            ++D+ ++ G++  A  +   M  D + ++ W A++    +H      +G       L L
Sbjct: 453 ALIDMYSKCGKISFAREVFNRM--DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL 510

Query: 546 EPDHGAHYVLLSN 558
           +PD      LLS+
Sbjct: 511 KPDDITFICLLSS 523



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 214/472 (45%), Gaps = 40/472 (8%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L  +   K+L     +HG  V     N  +  + L+  +A   C   L  +R +F  + 
Sbjct: 216 VLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC---LLYARKIFDVMG 272

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N   W+ ++ GY  SD  +EAL L+  M+ K  + P   T   VL +CA+L+    G 
Sbjct: 273 VRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGR 332

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++HC+IIK G   D+ + N L+  Y+  G I++A + F+    +D VS++ +++G  Q  
Sbjct: 333 KLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNG 392

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL +FR MQ S I PD  T + +  AC+ L   + G   H   Y  +    ++ L+
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG--YLIVRGFATDTLI 450

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+I+MY+KCG ++ A  VF+ M       +W++MI GY                    
Sbjct: 451 CNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGY-------------------- 489

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                    G   +G   +AL LF  + +LG+ PD++T + +L +C   G +  G+    
Sbjct: 490 ---------GIHGLG--MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFD 538

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
               +      +     ++D+  + G ID A      +P     V ++++++S    H  
Sbjct: 539 AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFE-PDVRIWSALLSACRIHKN 597

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
            E    V ++++ +G +  G  FV +    S  G  ++      +  ++G+K
Sbjct: 598 IELGEEVSKKIQSLGPESTG-NFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 648



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 9   SSLLALLESCK---SLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           +++L +L +C    +L+     HG ++  G     +  + LI  ++  G    +  +R +
Sbjct: 414 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCG---KISFAREV 470

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           F+++D  +I  WN ++ GY       EAL L+  +L+ G+  P++ TF  +L+SC+
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL-KPDDITFICLLSSCS 525


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/595 (39%), Positives = 347/595 (58%), Gaps = 46/595 (7%)

Query: 130 QIHCHIIKFGLEF---DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           Q+H  ++K+   F   +L    AL    S +G ++ A  +F          +NT+I GY 
Sbjct: 6   QVHAQVLKWENSFCASNLVATCAL----SDWGSMDYACSIFRQIDQPGTFEFNTMIRGYV 61

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
            V     AL+L+ +M +  ++ D FT+ A+F AC  L     G Q H  ++K  G  G +
Sbjct: 62  NVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKR-GLEG-D 119

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + ++ ++INMY KCG                                KIE +  +F+ MD
Sbjct: 120 LFVQNSLINMYGKCG--------------------------------KIELSCSVFEHMD 147

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGK 365
           +RD+ SW+A+I+ ++ +G +S+ L +FG+M   G   P+E  +V+VL AC  LGALD G+
Sbjct: 148 RRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGR 207

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
             H   + N+    N+ + T++IDMY KCG I+  LS+F ++ K  K    ++ +I+GLA
Sbjct: 208 CTHVTLLRNIR-EMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVK--KNQLSYSVMITGLA 264

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            HG G  ++ VF +M   GLKPD V ++ VL AC+H GLV+EG Q F  M L +GI+P +
Sbjct: 265 MHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTI 324

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           +HYGC+V L+ R G L++A   I+SMP   N V+WR LL+AC+ H N +IGEIA + L +
Sbjct: 325 QHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGE 384

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           L   +   YV+LSNM A   RWE+  ++R  M   G  + PG+S ++    +++F++   
Sbjct: 385 LNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDM 444

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHPQ K +  M+  M  +LK  GY P+T QV+FDVDEEEK   +  HS+KLA+AF LI++
Sbjct: 445 SHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHT 504

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                IRI +NLR+C DCH   KL+S IY+REI VRD  RFH FK G CSC D+W
Sbjct: 505 SQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 178/325 (54%), Gaps = 15/325 (4%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           Q+H Q++     +   +S L++  ALS   +  +   I F QID P  F +NT++RGY  
Sbjct: 6   QVHAQVLK--WENSFCASNLVATCALSDWGSMDYACSI-FRQIDQPGTFEFNTMIRGYVN 62

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
             + + AL LY  ML +G+ S +NFT+P +  +CA L S + G QIH +I K GLE DLF
Sbjct: 63  VMNMENALFLYYEMLERGVES-DNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLF 121

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--QD 203
           ++N+LI+ Y   G I  +  VFE    RD+ S++ +I  +A +      L +F +M  + 
Sbjct: 122 VQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREG 181

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           SC +P+    V++ SACT L    +G+  H  + +N+  +  N++++T++I+MY KCG +
Sbjct: 182 SC-RPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREM--NVIVQTSLIDMYVKCGCI 238

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISG 319
                +F  M + K+  ++S MI+G    G+   A Q+F  M +     D V +  ++S 
Sbjct: 239 EKGLSLFQRM-VKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSA 297

Query: 320 YSQVGGFSQALELFGKME-SLGIHP 343
            +  G   + L+ F +M+   GI P
Sbjct: 298 CNHAGLVDEGLQCFNRMKLEHGIEP 322



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 123/280 (43%), Gaps = 8/280 (2%)

Query: 13  ALLESCKSLK---QALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           AL ++C SL+   + +QIHG I   GL   +   + LI+ +   G    +  S  +F  +
Sbjct: 90  ALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCG---KIELSCSVFEHM 146

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           D  ++  W+ ++  ++      E L ++  M  +G   P       VL++C  L +   G
Sbjct: 147 DRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLG 206

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
              H  +++   E ++ ++ +LI  Y   G I     +F+  + ++ +SY+ +I G A  
Sbjct: 207 RCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMH 266

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL +F  M +  ++PD   ++ + SAC        G Q    +    G +   + 
Sbjct: 267 GRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHG-IEPTIQ 325

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
               ++++  + G++N A     +M +  +   W  ++S 
Sbjct: 326 HYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSA 365


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/652 (37%), Positives = 366/652 (56%), Gaps = 45/652 (6%)

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  W +L+ G   +     AL+ +T+M  +  V PN+FTFP V  + A +    +G QIH
Sbjct: 73  VVTWTSLISGCVHNRRFLPALLHFTNM-RRDNVQPNDFTFPCVFKASAFVQIPMTGKQIH 131

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
              +K G+ +D+F+  +    Y   G+  +A  +F+    R+L ++N  I+   Q +   
Sbjct: 132 GLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSL 191

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKT 251
            A+  F++      +P++ TF A  +AC ++    +G+Q HA + +   C    ++ +  
Sbjct: 192 DAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVR---CGYKEDVSVAN 248

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
            +I+ Y KCG +  AE VF+ +G  K+  +W SM++   +  + ERA  +F Q  +    
Sbjct: 249 GLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE--- 305

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
                                        + P +  + +VL AC  LG L+ G+ +H   
Sbjct: 306 -----------------------------VEPTDFMISSVLSACAELGGLELGRSVHALA 336

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNSIISGLAQHGLG 430
           ++  V   NIF+ +A++DMY KCGSI+ A  VF ++P +NL T   +N++I G A  G  
Sbjct: 337 VKACV-EDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVT---WNAMIGGYAHQGDI 392

Query: 431 ETSIAVFREMEL--MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
           + ++ +F EM L   G++P  VT +++L  CS  G VE G Q FESM LNYGI+P  EH+
Sbjct: 393 DMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHF 452

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C+VDLL R G +D AY  IQ+M       +W ALL ACR+H   ++G+IA +KL +L+ 
Sbjct: 453 ACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDH 512

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
               ++V+LSNMLA   RWEEA  VRK M D GI+K  G+S+I     +H F A   SH 
Sbjct: 513 VDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHD 572

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           +  EI+ ML  +   +K AGYVP+T   +FD+++EEK + V YHSEK+ALAFGLI     
Sbjct: 573 RNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQG 632

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IRITKNLRICGDCH A K +S I  REI+VRD  RFH FK G CSC D+W
Sbjct: 633 VPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/662 (35%), Positives = 380/662 (57%), Gaps = 15/662 (2%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   ++  W  ++ GY+      E+LVL+  M  +G+V P+      V+ +CA
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV-PDKVAMVTVVFACA 270

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L +      I  +I +   + D+ +  A+I  Y+  G + +A ++F+    ++++S++ 
Sbjct: 271 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 330

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I  Y    +   AL LFR M  S + PD  T  ++  AC    +    +Q HA    ++
Sbjct: 331 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHA--QASV 388

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +  N+++   +++ Y+    ++ A  +F  M + + + +WS M+ G+ + G       
Sbjct: 389 HGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCV-RDSVSWSVMVGGFAKVGDYMNCFG 447

Query: 301 LFDQMDQRDLVSWTAMISGYSQ--VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            F     R+L+   A    Y+    G  +++L LF KM   G+ PD+V MV V+ AC  L
Sbjct: 448 TF-----RELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 502

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GA+   + +   YI+   F  ++ L TA+IDM+AKCG +++A  +F ++ +  K V  ++
Sbjct: 503 GAMHKARTI-DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE--KNVISWS 559

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
           ++I+    HG G  ++ +F  M   G+ P+ +T V++L ACSH GLVEEG +FF  M  +
Sbjct: 560 AMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWED 619

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y ++  ++HY C+VDLL R GRLDEA  LI+SM  + +  +W A L ACR H++  + E 
Sbjct: 620 YSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEK 679

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A   LL+L+P +  HY+LLSN+ A   RWE+  + R LM    ++K PGW++IE +   H
Sbjct: 680 AATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSH 739

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
           +F     +HP++KEI  MLK +  KL+  GYVP+T  V+ DVDEE K  ++  HSEKLA+
Sbjct: 740 QFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAI 799

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGLI +     IRI KNLR+CGDCH   KL+S I  R I+VRDA RFH FK+G CSC D
Sbjct: 800 AFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGD 859

Query: 718 FW 719
           +W
Sbjct: 860 YW 861



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 208/421 (49%), Gaps = 67/421 (15%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L +C  L+  +   Q+H      G+  ++ + N LI+FYS +  +++A+ +F+G   RD 
Sbjct: 88  LVNCRNLTQVR---QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           VS++ ++ G+A+V +       FR++     +PD +T   +  AC +L +          
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN---------- 194

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
                        L+ A+++MY KC                              RE  I
Sbjct: 195 -------------LQMALVDMYVKC------------------------------RE--I 209

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           E AR LFD+M +RDLV+WT MI GY++ G  +++L LF KM   G+ PD+V MV V+ AC
Sbjct: 210 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 269

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LGA+    R+   YI+   F  ++ L TA+IDMYAKCG +++A  +F ++ +  K V 
Sbjct: 270 AKLGAM-HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE--KNVI 326

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            ++++I+    HG G  ++ +FR M   G+ PD +T  ++L AC +   + + +Q     
Sbjct: 327 SWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQA 386

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             +G+   +     +V   +    LD+AYGL   M    +SV W  ++        AK+G
Sbjct: 387 SVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCV-RDSVSWSVMVGGF-----AKVG 440

Query: 536 E 536
           +
Sbjct: 441 D 441



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 131/563 (23%), Positives = 243/563 (43%), Gaps = 95/563 (16%)

Query: 12  LALLESCKSLKQALQIHGQI-VHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++ L +C++L Q  Q+H Q  VH  L + + +++LI F++       L  +  LF  +  
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYY---RALDDAYGLFDGMCV 141

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            +   W+ ++ G+++          +  ++  G   P+N+T PFV+ +C  L +      
Sbjct: 142 RDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKN------ 194

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
                          ++ AL+  Y     I +A  +F+    RDLV++  +I GYA+  +
Sbjct: 195 ---------------LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 239

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              +L LF KM++  + PD    V +  AC +L      +     + +       +++L 
Sbjct: 240 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK--FQLDVILG 297

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           TA+I+MYAKCG +  A  +F  M   K+  +WS+MI+ Y                     
Sbjct: 298 TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAY--------------------- 335

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                   GY   G   +AL+LF  M S G+ PD++T+ ++L AC+    L   +++H Q
Sbjct: 336 --------GYHGQG--RKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQ 385

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV------------------FYKIPKNLK 412
              + +  +N+ +   ++  Y+   ++D A  +                  F K+   + 
Sbjct: 386 ASVHGML-QNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMN 444

Query: 413 TVSLFNSIISGLAQH--------GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
               F  +I   A+         G    S+ +F +M   G+ PD V  VTV+ AC+  G 
Sbjct: 445 CFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 504

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           + + +   + +     +  +     M+D+ A+ G ++ A  +   M  + N + W A++A
Sbjct: 505 MHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIA 563

Query: 525 ACRLHRNAKIGEIAGQKLLDLEP 547
           A   H         G+K LDL P
Sbjct: 564 AYGYHGQ-------GRKALDLFP 579



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 148/306 (48%), Gaps = 28/306 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQI-VHSGLNHHISSSQLISFFALSGCKN---GLF----- 59
           +SLL    +C++L Q  Q+H Q  VH  L + I +++L+ F++     +   GLF     
Sbjct: 364 ASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCV 423

Query: 60  RSRILFSQI--------DNPNIF-IWNTLMRGYSRSD--------SPQEALVLYTSMLSK 102
           R  + +S +        D  N F  +  L+R  +R D        +  E+LVL+  M  +
Sbjct: 424 RDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREE 483

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G+V P+      V+ +CA+L +      I  +I +   + D+ +  A+I  ++  G + +
Sbjct: 484 GVV-PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 542

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A ++F+    ++++S++ +I  Y    +   AL LF  M  S I P+  T V++  AC+ 
Sbjct: 543 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 602

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
                 G +F ++++++   V +++   T V+++  + G ++ A ++  +M + K    W
Sbjct: 603 AGLVEEGLRFFSLMWEDYS-VRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLW 661

Query: 283 SSMISG 288
            + +  
Sbjct: 662 GAFLGA 667


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/593 (38%), Positives = 363/593 (61%), Gaps = 12/593 (2%)

Query: 1    MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLF 59
            +++LV + +S+ +     + ++   ++H   + SGL N H + S+++  +A+   +  L 
Sbjct: 447  VRKLVDQRNSVKSFFNIVR-MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAI--LQPDLV 503

Query: 60   RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
             +  +F QI+ P  F+WN L+RG ++SD+P +A+  Y      G+V P+N TFPF+L +C
Sbjct: 504  FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMV-PDNLTFPFILKAC 562

Query: 120  ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            AR+++   G Q+H HI K GL  D+F+ N+LIH Y+  G +  A  VF+  + +D+VS+N
Sbjct: 563  ARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWN 622

Query: 180  TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +LI GY+Q       L LF+ MQ+  ++ D  T + + SACT L D  +    + V Y  
Sbjct: 623  SLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMAD--YMVRYIE 680

Query: 240  LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              C+  ++ L   +++ + + G +  AE+VF  M + ++    ++MI+ Y +   I  AR
Sbjct: 681  DYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKV-RNIVTMNAMIAAYAKGQDIVSAR 739

Query: 300  QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            ++FDQ+ ++DL+SW++MISGYSQ   FS ALE+F +M+   + PD + + +V+ +C  LG
Sbjct: 740  KIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLG 799

Query: 360  ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            ALD GK +H+ Y+       +  +  ++IDMY KCGS   AL VF ++ K   T+S +NS
Sbjct: 800  ALDLGKWVHE-YVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEM-KEKDTLS-WNS 856

Query: 420  IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
            II GLA +G  + S+ +F+ M   G +P+GVTF+ VL AC++  LVEEG   FESM   Y
Sbjct: 857  IIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLY 916

Query: 479  GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
             ++PQM+HYGC+VDLL R G+L++A   I  MP D + V+WR LL +C  H +  I EI 
Sbjct: 917  SLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIV 976

Query: 539  GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             +KL +LEP +  +Y LLSN  A  +RW EA  VR+ M D+ ++K PG S +E
Sbjct: 977  TKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  278 bits (710), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 243/416 (58%), Gaps = 11/416 (2%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           AH+VF+    R    ++ L+  Y+    P  AL LFR  +      D + F     AC  
Sbjct: 47  AHQVFD----RRPTPWHALLKAYSHGPHPQDALQLFRHARWHAAD-DTYAFTFALKACAG 101

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L  PR   Q H +V +          + TA++N+Y  CG +  +   F  M + K+  +W
Sbjct: 102 LGWPRCCMQLHGLVVRK--GFEFQTYVHTALVNVYILCGCLADSRMAFEEMPV-KNAVSW 158

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + +I+G+   G++E AR LF++M  R++VSW+ MI GY++     +A+ LF +M + GI 
Sbjct: 159 NVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGIS 218

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P E+T++AV+ A   +G +  G+ LH  Y E      ++ +  ++ID+YAK GSI  +L 
Sbjct: 219 PSEITVLAVVPALSNVGKILIGEALHG-YCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLR 277

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF ++      VS + SIISG A HGL   ++ +F +M   G++P+ +TF++VL ACSHG
Sbjct: 278 VFDEMLDRRNLVS-WTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHG 336

Query: 463 GLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLVE+G  FF+SM+  Y I P ++H+GC++D+L R GRL EA  +I+  P + N+ +WR 
Sbjct: 337 GLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRT 396

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           LL  C  +   ++GE   +K+L LE + G  +V+LSNML E  R+ +A  VRKL+D
Sbjct: 397 LLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVD 452



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 178/415 (42%), Gaps = 70/415 (16%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           S+++  Q+ +     W+ L++ YS    PQ+AL L+    ++   + + + F F L +CA
Sbjct: 43  SQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRH--ARWHAADDTYAFTFALKACA 100

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L   +   Q+H  +++ G EF  ++  AL++ Y + G + ++   FE    ++ VS+N 
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 181 LINGYAQVKE-------------------------------PCPALWLFRKMQDSCIQPD 209
           +I G+A   E                               P  A+ LFR+M    I P 
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T +A+  A + +    IG+  H    K  G V  ++ +  ++I++YAK G +  + RV
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKE-GLVW-DVRVGNSLIDLYAKIGSIQNSLRV 278

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  M   ++  +W+S+ISG+   G                                  +A
Sbjct: 279 FDEMLDRRNLVSWTSIISGFAMHGL-------------------------------SVKA 307

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           +ELF  M   GI P+ +T ++VL AC   G ++ G    +  I       ++     +ID
Sbjct: 308 VELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIID 367

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREME 441
           M  + G +  A  +    P  +   +++ +++   +++G   +GE ++     +E
Sbjct: 368 MLGRAGRLREAEQIIRDFPVEVNA-TVWRTLLGCCSKYGEVEMGERTMKKILALE 421


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/609 (38%), Positives = 356/609 (58%), Gaps = 41/609 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F   L SC  L   +   Q+H  I   G   +L + N L++ Y   G + +A ++F+G  
Sbjct: 56  FRSSLLSCRNLFQVR---QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMS 112

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R   S++ ++ GYA+V       W+FR++  S    D ++   +  AC +L D + G+ 
Sbjct: 113 KRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRL 172

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H +  K  G    + +  T +++MYA+C +                             
Sbjct: 173 IHCITLK-CGLDYGHFVCAT-LVDMYARCKV----------------------------- 201

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
              +E A Q+F +M +RDL +WT MI   ++ G   ++L  F +M + GI PD+V +V V
Sbjct: 202 ---VEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTV 258

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           + AC  LGA++  K +H  YI    +  ++ L TA+IDMYAKCGS+++A  +F ++   +
Sbjct: 259 VYACAKLGAMNKAKAIHA-YINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRM--QV 315

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           + V  ++++I+    HG GE ++ +F  M   G+ P+ +TFV++L ACSH GL+EEG++F
Sbjct: 316 RNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRF 375

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F SM + YG+ P ++HY CMVDLL R GRLDEA  +I+ MP + + V+W ALL ACR+HR
Sbjct: 376 FSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHR 435

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           +  + E   + LL L+     HYVLLSN+ A   +WE+  + R LM   G++K PG ++I
Sbjct: 436 HLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWI 495

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E    L++F    K+HP++ EI  MLK +  KL+ AGY P+T  V++DVDEE K+ ++  
Sbjct: 496 EVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYS 555

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+AFGL+       IRITKNLR+CGDCH   K +S I ++ I+VRDA RFH FK+
Sbjct: 556 HSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKE 615

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 616 GVCSCRDYW 624



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 189/401 (47%), Gaps = 43/401 (10%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SSLL    SC++L Q  Q+H QI  +G   +++ +  + +  +   +  L  ++ LF  +
Sbjct: 58  SSLL----SCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVE--RGALEDAQELFDGM 111

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP-NNFTFPFVLNSCARLSSFKS 127
              + + W+ ++ GY++  +      ++  +L  G  +P ++++ P V+ +C  L   K 
Sbjct: 112 SKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSG--APLDDYSAPVVIRACRDLKDLKC 169

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IHC  +K GL++  F+   L+  Y+    + +AH++F     RDL ++  +I   A+
Sbjct: 170 GRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAE 229

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  +L  F +M++  I PD    V +  AC +L      K  HA  Y N      ++
Sbjct: 230 SGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHA--YINGTGYSLDV 287

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           +L TA+I+MYAKCG +  A  +F  M + ++   WS+MI+ Y   G+ E+          
Sbjct: 288 ILGTAMIDMYAKCGSVESARWIFDRMQV-RNVITWSAMIAAYGYHGQGEK---------- 336

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                ALELF  M   GI P+ +T V++L AC   G ++ G+R 
Sbjct: 337 ---------------------ALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRF 375

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
                +      ++   T ++D+  + G +D AL +   +P
Sbjct: 376 FSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMP 416


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 381/684 (55%), Gaps = 45/684 (6%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG--C 129
           +  + N +M  ++R+     A+ ++ ++L  G + P++++F  ++++  ++ +  +    
Sbjct: 124 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 183

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYS-----------------------------IFGYI 160
           Q+HC ++K G    L + NALI  Y                              + GY+
Sbjct: 184 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 243

Query: 161 -----NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
                N A  VFE    +  V +N +I+GY Q      A  LFR+M    +  D FTF +
Sbjct: 244 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 303

Query: 216 MFSACTELNDPRIGKQFHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + SAC        GK  H  + +   N     + + +  A++ +Y+K G + +A+R+F T
Sbjct: 304 VLSACANAGFFVHGKSVHGQIIRLQPNF-VPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M + K   +W++++SGY   G +++A ++F  M  ++ +SW  M+SGY   G    AL+L
Sbjct: 363 MNL-KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKL 421

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M +  + P + T    + AC  LGAL  G++LH   ++   F  +     A++ MYA
Sbjct: 422 FNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNSAGNALLTMYA 480

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCG+++ A  VF  +P NL +VS +N++IS L QHG G  ++ +F +M   G+ PD ++F
Sbjct: 481 KCGAVNDARLVFLVMP-NLDSVS-WNAMISALGQHGHGREALELFDQMVAEGIDPDRISF 538

Query: 453 VTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           +T+L AC+H GLV+EG  +FESM  ++GI P  +HY  ++DLL R GR+ EA  LI++MP
Sbjct: 539 LTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP 598

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
           ++    IW A+L+ CR + + + G  A  +L  + P H   Y+LLSN  +   RW +A +
Sbjct: 599 FEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAAR 658

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRKLM D G++K PG S+IE    +H FL     HP+ +E+   L+ +  +++  GYVP+
Sbjct: 659 VRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPD 718

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V+ D++  EKE ++  HSEKLA+ FGL+      T+ + KNLRICGDCH A   +S+
Sbjct: 719 TKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSK 778

Query: 692 IYRREIMVRDAIRFHLFKKGNCSC 715
              REI+VRD  RFH FK G CSC
Sbjct: 779 AVGREIVVRDVRRFHHFKDGECSC 802



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 198/429 (46%), Gaps = 50/429 (11%)

Query: 148 NALIHFYSIFGYINNAHKVFEG--SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS- 204
            +L+   +  G + +A   F+      RD V +N +++ +A+     PA+ +F  +  S 
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 205 CIQPDAFTFVAMFSACTELND---PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            ++PD ++F A+ SA  ++++   P    Q H  V K+     + + +  A+I +Y KC 
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHC-TQLHCSVLKS--GAAAVLSVSNALIALYMKCD 212

Query: 262 LMNM---AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
                  A +V   M   K    W++M+ GY R G +  AR +F+++D +  V W AMIS
Sbjct: 213 TPEASWDARKVLDEMP-DKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS 271

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE---NV 375
           GY Q G  + A ELF +M S  +  DE T  +VL AC   G    GK +H Q I    N 
Sbjct: 272 GYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 331

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI--------------- 420
           V    + +  A++ +Y+K G I  A  +F  +  NLK V  +N+I               
Sbjct: 332 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTM--NLKDVVSWNTILSGYIDSGCLDKAVE 389

Query: 421 ----------------ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
                           +SG    GL E ++ +F +M    +KP   T+   + AC   G 
Sbjct: 390 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 449

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++ G+Q    ++  G +        ++ + A+ G +++A  +   MP + +SV W A+++
Sbjct: 450 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMIS 508

Query: 525 ACRLHRNAK 533
           A   H + +
Sbjct: 509 ALGQHGHGR 517



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 199/458 (43%), Gaps = 72/458 (15%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++D     +WN ++ GY +S    +A  L+  M+S+  V  + FTF  VL++CA
Sbjct: 251 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEK-VPLDEFTFTSVLSACA 309

Query: 121 RLSSFKSGCQIHCHIIK----FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
               F  G  +H  II+    F  E  L + NAL+  YS  G I  A ++F+    +D+V
Sbjct: 310 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVV 369

Query: 177 SYNTLINGY---------AQVKEPCP----------------------ALWLFRKMQDSC 205
           S+NT+++GY          +V +  P                      AL LF +M+   
Sbjct: 370 SWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED 429

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P  +T+    +AC EL   + G+Q HA + +  G   SN     A++ MYAKCG +N 
Sbjct: 430 VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ-CGFEASNS-AGNALLTMYAKCGAVND 487

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  VF  M  +  + +W++MIS   + G    A +LFDQM                    
Sbjct: 488 ARLVFLVMP-NLDSVSWNAMISALGQHGHGREALELFDQMVAE----------------- 529

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
                         GI PD ++ + +L AC   G +D G    +    +           
Sbjct: 530 --------------GIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 575

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
            +ID+  + G I  A  +   +P    T S++ +I+SG   +G  E       ++  M  
Sbjct: 576 RLIDLLGRSGRIGEARDLIKTMPFE-PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 634

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           + DG T++ +    S  G   +  +  + M + G+K +
Sbjct: 635 QHDG-TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKE 671



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 12/307 (3%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + ++S +  SGC   L ++  +F  +   N   W  ++ GY      ++AL L+  M
Sbjct: 369 VSWNTILSGYIDSGC---LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 425

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
            ++  V P ++T+   + +C  L + K G Q+H H+++ G E      NAL+  Y+  G 
Sbjct: 426 RAED-VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 484

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +N+A  VF      D VS+N +I+   Q      AL LF +M    I PD  +F+ + +A
Sbjct: 485 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 544

Query: 220 CTELNDPRIGKQFHAVVYKNLG-CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           C        G  +   + ++ G   G +   +  +I++  + G +  A  +  TM    +
Sbjct: 545 CNHAGLVDEGFHYFESMKRDFGISPGEDHYAR--LIDLLGRSGRIGEARDLIKTMPFEPT 602

Query: 279 TAAWSSMISGYTREGKIE----RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
            + W +++SG    G +E     A QLF  + Q D  ++  + + YS  G +  A  +  
Sbjct: 603 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD-GTYILLSNTYSAAGRWVDAARVRK 661

Query: 335 KMESLGI 341
            M   G+
Sbjct: 662 LMRDRGV 668


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/475 (45%), Positives = 319/475 (67%), Gaps = 5/475 (1%)

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ L   ++  Y     +  A +VF  M M +   +W++MI GY   G++  AR++FD  
Sbjct: 22  DVFLCNVMLAAYVSRSEVAEARKVFDGMPM-RDLVSWNTMIHGYAMRGEVGLAREIFDGT 80

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           + RD  SW++MIS Y++     +ALEL+ +M +  I PD +T+V+V+ AC  LGAL  G 
Sbjct: 81  EDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGA 140

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H+ ++E+     ++ L TA+IDMYAKCG I++A  VF ++P+  K V  ++S+I GLA
Sbjct: 141 EVHR-FVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPE--KDVQTWSSMIIGLA 197

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQM 484
            HGLG  S+++F +M   G+KP+GVTFV VL AC+H GLV EGK++F SM   +GI+P +
Sbjct: 198 NHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTV 257

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHYGCMVDLL R G ++EA  LI+SM ++ +++IWRALL ACR+H+N +I E A  KL  
Sbjct: 258 EHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRV 317

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           L+P    HYVLLSN+ A+   WE   ++RK +    IQ+ PG S IE +  +H F++  +
Sbjct: 318 LDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDR 377

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
            HP++KEI  +L++M  +LK AGY P T  V+ D+DE+ KE  ++ HSEKLA+AF L+ +
Sbjct: 378 LHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTT 437

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            ++ TIRITKNLR C DCH A KL+S +Y R+++VRD  RFH F +G CSC D+W
Sbjct: 438 PARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 38/305 (12%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           DL   N +IH Y++ G +  A ++F+G+  RD  S++++I+ YA+ +    AL L+R+M 
Sbjct: 53  DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
            + I PD  T V++ SAC++L    +G + H  V  N   +  ++ L TA+I+MYAKCG 
Sbjct: 113 AASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNR--IELDLKLGTALIDMYAKCGD 170

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A+RVF  M   K    WSSMI G    G                             
Sbjct: 171 IESAQRVFDRMP-EKDVQTWSSMIIGLANHG----------------------------- 200

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
           +G   ++L LF KM S G+ P+ VT V VL AC  +G +  GK+  +   E       + 
Sbjct: 201 LG--HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVE 258

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFRE 439
               ++D+  + G ++ A  +   +     T+ ++ +++     H    + E ++A  R 
Sbjct: 259 HYGCMVDLLGRSGHVEEARQLIRSMTFEPDTI-IWRALLGACRIHKNVEIAEEAMAKLRV 317

Query: 440 MELMG 444
           ++ +G
Sbjct: 318 LDPLG 322



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 46/283 (16%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + +I  +A+ G + GL R   +F   ++ + F W++++  Y++S   +EAL L+  M
Sbjct: 55  VSWNTMIHGYAMRG-EVGLARE--IFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM 111

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
            +  I+ P+  T   V+++C+ L +   G ++H  +    +E DL +  ALI  Y+  G 
Sbjct: 112 HAASII-PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGD 170

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I +A +VF+    +D+ +++++I G A       +L LF KM    ++P+  TFV +  A
Sbjct: 171 IESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIA 230

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM----GM 275
           CT +                                     GL++  ++ F +M    G+
Sbjct: 231 CTHV-------------------------------------GLVSEGKKYFRSMNEVHGI 253

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLVSWTAMI 317
             +   +  M+    R G +E ARQL   M  + D + W A++
Sbjct: 254 EPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 401/713 (56%), Gaps = 49/713 (6%)

Query: 14  LLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L++C  L   +  ++IH      GL   +   + L+ F+A  G    L  ++ LFS + 
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI---LVEAQRLFSSMS 171

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + ++  WN ++ G S      +A+ L   M  +GI  PN+ T   VL +     +   G 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGHGK 230

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +H + ++   +  + +   L+  Y+    +  A K+F+    R+ VS++ +I GY    
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSD 290

Query: 190 EPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
               AL LF +M  +D+ + P   T  ++  AC +L D   G++ H  + K LG V  ++
Sbjct: 291 CMKEALELFDQMILKDA-MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-LGXV-LDI 347

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           LL   +++MYAKCG+                                I+ A + FD M+ 
Sbjct: 348 LLGNTLLSMYAKCGV--------------------------------IDDAIRFFDXMNP 375

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           +D VS++A++SG  Q G  + AL +F  M+  GI PD  TM+ VL AC  L AL  G   
Sbjct: 376 KDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCS 435

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  Y+    F  +  +  A+IDMY+KCG I  A  VF ++ ++   +  +N++I G   H
Sbjct: 436 HG-YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH--DIVSWNAMIIGYGIH 492

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           GLG  ++ +F ++  +GLKPD +TF+ +L +CSH GLV EG+ +F++M  ++ I P+MEH
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
             CMVD+L R G +DEA+  I++MP++ +  IW ALL+ACR+H+N ++GE   +K+  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P+   ++VLLSN+ +   RW++A  +R    D G++K PG S+IE NG +H F+   +SH
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            Q  +I   L+++ +++K  GY      V  DV+EEEKE ++ YHSEKLA+AFG++N ++
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKA 732

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              I +TKNLR+CGDCH A K ++ I +REI VRDA RFH FK G C+C DFW
Sbjct: 733 GRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 280/569 (49%), Gaps = 52/569 (9%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           L LLE+C   KSL +A +IH   + +  N   S    ++   LS   N +  +R LF +I
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC--NQVVLARRLFDEI 69

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            NP++ +WN ++R Y+ +     A+ LY SML  G V PN +T+PFVL +C+ L + + G
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDG 128

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH H   FGLE D+F+  AL+ FY+  G +  A ++F     RD+V++N +I G +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ L  +MQ+  I P++ T V +     E      GK  H    +      + ++
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR--SFDNGVV 246

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + T +++MYAKC  +  A ++F  MG+ ++  +WS+MI GY     ++ A +LFDQM  +
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGV-RNEVSWSAMIGGYVXSDCMKEALELFDQMILK 305

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D                               + P  VT+ +VLRAC  L  L  G++LH
Sbjct: 306 D------------------------------AMDPTPVTLGSVLRACAKLTDLSRGRKLH 335

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             YI  +    +I L   ++ MYAKCG ID A+  F  +  N K    F++I+SG  Q+G
Sbjct: 336 -CYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXM--NPKDSVSFSAIVSGCVQNG 392

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               ++++FR M+L G+ PD  T + VL ACSH   ++ G      ++  G         
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 452

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNA--KIGEIAGQKLLDL 545
            ++D+ ++ G++  A  +   M  D + ++ W A++    +H      +G       L L
Sbjct: 453 ALIDMYSKCGKISFAREVFNRM--DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL 510

Query: 546 EPDHGAHYVLLSN-----MLAETYRWEEA 569
           +PD      LLS+     ++ E   W +A
Sbjct: 511 KPDDITFICLLSSCSHSGLVMEGRLWFDA 539



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 214/472 (45%), Gaps = 40/472 (8%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L  +   K+L     +HG  V     N  +  + L+  +A   C   L  +R +F  + 
Sbjct: 216 VLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC---LLYARKIFDVMG 272

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N   W+ ++ GY  SD  +EAL L+  M+ K  + P   T   VL +CA+L+    G 
Sbjct: 273 VRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGR 332

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++HC+IIK G   D+ + N L+  Y+  G I++A + F+    +D VS++ +++G  Q  
Sbjct: 333 KLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNG 392

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL +FR MQ S I PD  T + +  AC+ L   + G   H   Y  +    ++ L+
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG--YLIVRGFATDTLI 450

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+I+MY+KCG ++ A  VF+ M       +W++MI GY                    
Sbjct: 451 CNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGY-------------------- 489

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                    G   +G   +AL LF  + +LG+ PD++T + +L +C   G +  G+    
Sbjct: 490 ---------GIHGLG--MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFD 538

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
               +      +     ++D+  + G ID A      +P     V ++++++S    H  
Sbjct: 539 AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFE-PDVRIWSALLSACRIHKN 597

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
            E    V ++++ +G +  G  FV +    S  G  ++      +  ++G+K
Sbjct: 598 IELGEEVSKKIQSLGPESTG-NFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 648



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 9   SSLLALLESCK---SLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           +++L +L +C    +L+     HG ++  G     +  + LI  ++  G    +  +R +
Sbjct: 414 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCG---KISFAREV 470

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           F+++D  +I  WN ++ GY       EAL L+  +L+ G+  P++ TF  +L+SC+
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL-KPDDITFICLLSSCS 525


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/766 (33%), Positives = 410/766 (53%), Gaps = 84/766 (10%)

Query: 26  QIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           Q+H Q + SG    +S  +S +  +      ++G    R +F ++   N+  W +L+ GY
Sbjct: 125 QVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDG----RGIFDEMGIKNVVSWTSLLSGY 180

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           +R+    E + L   M  +G V+PN FTF  VL + A  S  + G Q+H  I+K G EF 
Sbjct: 181 ARNGLNDEVIHLINQMQMEG-VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFT 239

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
            F+ NALI  Y     + +A  VF+  + RD V++N +I GYA +        +F +M+ 
Sbjct: 240 TFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRL 299

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           + ++     F      C++  +    KQ H  V KN      +  ++TA++  Y+KC  +
Sbjct: 300 AGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQD--IRTALMVTYSKCSSV 357

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR--------------- 308
           + A ++FS    + +   W++MI G+ +    E+A  LF QM +                
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG 417

Query: 309 ---DLVSW-----------------TAMISGYSQVG------------------------ 324
               L+S                  TA++  Y + G                        
Sbjct: 418 KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML 477

Query: 325 -GFSQALELFGKMESL------GIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVV 376
            G +Q  +    ME        G+ P+E T  +V+ AC    A ++ GK++H   +++  
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS-- 535

Query: 377 FGRN--IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
            G++  + +++A++ MY+K G+I++A  VF +  +  + +  +NS+I+G  QHG  + ++
Sbjct: 536 -GKSNALCVSSALLTMYSKKGNIESAEKVFTR--QEERDIVSWNSMITGYGQHGDAKKAL 592

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDL 493
            VF+ M+  GL  D VTF+ VL AC+H GLVEEG+++F  M+ +Y I  ++EHY CMVDL
Sbjct: 593 EVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDL 652

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
            +R G  D+A  +I  MP+ A+  IWR LLAACR+HRN ++G++A +KL+ L+P+    Y
Sbjct: 653 YSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGY 712

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLLSN+ A    WEE   VRKLMD+  ++K  G S+IE    +  FLA   SHP +  + 
Sbjct: 713 VLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVY 772

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
             L+++++KLK  GY P+T  V  DV+EE KE ++S HSE+LA+A+GLI       I+I 
Sbjct: 773 AKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIE 832

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLRICGDCH   +L+S I  R ++VRD+ RFH FK G CSC  +W
Sbjct: 833 KNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/542 (23%), Positives = 227/542 (41%), Gaps = 84/542 (15%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF +    +I  +N L+  +SR++  +EAL L+  + S G+   +  T    L  C  L 
Sbjct: 60  LFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGL-GVDGLTLSCALKVCGVLF 118

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G Q+HC  +K G   D+ +  +L+  Y       +   +F+    +++VS+ +L++
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYA+       + L  +MQ   + P+ FTF  +  A  + +    G Q HA++ KN    
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN--GF 236

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                +  A+I MY K  ++  AE VF +M + + +  W+ MI GY   G      Q+F 
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSM-VVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 304 QM--------------------DQRDLVSW-------------------TAMISGYSQVG 324
           +M                     QR+L                      TA++  YS+  
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCS 355

Query: 325 GFSQALELFG--------------------------------KMESLGIHPDEVTMVAVL 352
              +A +LF                                 +M   G+ P+  T   VL
Sbjct: 356 SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVL 415

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
                        +LH Q I+   + +   + TA++D Y K G++  +  VFY IP   K
Sbjct: 416 AG----KPSSLLSQLHAQIIK-AYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA--K 468

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQF 471
            +  ++++++GLAQ    E ++ VF ++   G+KP+  TF +V+ AC S    VE GKQ 
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             + +  G    +     ++ + ++ G ++ A  +      + + V W +++     H +
Sbjct: 529 HATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHGD 587

Query: 532 AK 533
           AK
Sbjct: 588 AK 589



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 172/411 (41%), Gaps = 37/411 (9%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            L + A+++      Q   H IK  L    F+ +  + F S+      AH++F+ +  +D
Sbjct: 9   TLQNKAKITVGNGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKD 68

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +  YN L+  +++      AL LF+ +  S +  D  T       C  L D  +G+Q H 
Sbjct: 69  ISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHC 128

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
              K+ G +  ++ + T++++MY K         +F  MG+ K+  +W+S++SGY R G 
Sbjct: 129 QSLKS-GFL-EDVSVGTSLVDMYMKTEDFEDGRGIFDEMGI-KNVVSWTSLLSGYARNGL 185

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            +    L +QM                             +ME  G++P+  T   VL A
Sbjct: 186 NDEVIHLINQM-----------------------------QME--GVNPNGFTFATVLGA 214

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
                 ++ G ++H   ++N  F    F+  A+I MY K   +  A +VF  +   ++  
Sbjct: 215 LADESIIEGGVQVHAMIVKN-GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV--VRDS 271

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +N +I G A  G       +F  M L G+K     F T L  CS    +   KQ    
Sbjct: 272 VTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCG 331

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           ++  G +   +    ++   ++   +DEA+ L        N V W A++  
Sbjct: 332 VVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/694 (36%), Positives = 382/694 (55%), Gaps = 45/694 (6%)

Query: 27  IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
           IH Q++ +     I  + LI+F+   G + GL  +R +F  + + N    N LM GY+ +
Sbjct: 33  IHAQMIRAAHFDVIQHNHLIAFYGKCG-RLGL--ARQMFDAMPSRNAVSGNLLMSGYASA 89

Query: 87  DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
               +AL L    L     S N +     L++ A + S+  G Q H + +K GL+   ++
Sbjct: 90  GRHSDALAL----LKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYV 145

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            NA++H Y    ++ +A KVFE     D+ ++N++ING+  + E   ++ + R M     
Sbjct: 146 CNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVE 205

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           Q D  ++VA+   C    +  +G Q HA   K    +  N+ + +A+++MY KC      
Sbjct: 206 QWDHVSYVAVLGHCASTKELLLGCQVHAQALKRR--LEQNVYVGSALVDMYGKCDCA--- 260

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                                          A   F+ + ++++VSWTA+++ Y+Q   F
Sbjct: 261 -----------------------------RDAHSAFEVLPEKNVVSWTAVMTAYTQNERF 291

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
             AL+LF  +E  G+ P+E T    L +C GL AL  G  L    ++   +G  + +  A
Sbjct: 292 EDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGA-LSVCNA 350

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +++MY+K GSI  A  VF  +P   + V  +NS+I G A HGL   ++ VF +M L  + 
Sbjct: 351 LMNMYSKSGSIHDAWRVFLSMP--WRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIV 408

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           P  VTFV VL AC+  GLV+EG  +   M+   GIKP  EHY CMV LL R GRLDEA  
Sbjct: 409 PSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQ 468

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
            I S     + V W++LL++C++++N  +G    +++L L+P+    YVLLSNM A+  R
Sbjct: 469 FILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANR 528

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           W+   +VRKLM + G++K PG S+I+    +H F +  K+H    +I + LK++  ++K 
Sbjct: 529 WDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKV 588

Query: 626 AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLA 685
            GYVPN   V+ DV+ E+KE  + YHSEK+ALAFGLI+S   ETIRI KNLRIC DCH+A
Sbjct: 589 IGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRICDDCHVA 648

Query: 686 FKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KL+S + RR+I+VRD +RFH    G CSC D+W
Sbjct: 649 IKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 164/345 (47%), Gaps = 12/345 (3%)

Query: 7   EHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H S +A+L  C S K+ L   Q+H Q +   L  ++   S L+  +    C      + 
Sbjct: 208 DHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSA- 266

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
             F  +   N+  W  +M  Y++++  ++AL L+  +  +G V PN FT+   LNSCA L
Sbjct: 267 --FEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEG-VRPNEFTYAVALNSCAGL 323

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           ++ K+G  +    +K G    L + NAL++ YS  G I++A +VF     RD+VS+N++I
Sbjct: 324 AALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVI 383

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GYA       A+ +F  M  + I P   TFV +  AC +L     G  +  ++ K +G 
Sbjct: 384 IGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMG- 442

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---YTREGKIERAR 299
           +       T ++ +  + G ++ AE+   +  +     AW S++S    Y   G   R  
Sbjct: 443 IKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVA 502

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +   Q+   D+ ++  + + Y++   +   +++   M   G+  +
Sbjct: 503 EQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKE 547



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 159/358 (44%), Gaps = 41/358 (11%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFS 66
           S+ L+     +S     Q HG  V SGL  H  + ++ L  +   +  ++ +     +F 
Sbjct: 112 STALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAV----KVFE 167

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +IF +N+++ G+        ++ +  SM+ + +   ++ ++  VL  CA      
Sbjct: 168 NVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGE-VEQWDHVSYVAVLGHCASTKELL 226

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            GCQ+H   +K  LE ++++ +AL+  Y       +AH  FE    +++VS+  ++  Y 
Sbjct: 227 LGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYT 286

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q +    AL LF  ++   ++P+ FT+    ++C  L   + G    A   K  G  G+ 
Sbjct: 287 QNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKT-GHWGA- 344

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  A++NMY+K G ++ A RVF +M   +   +W+S+I GY   G    A  +F  M 
Sbjct: 345 LSVCNALMNMYSKSGSIHDAWRVFLSMPW-RDVVSWNSVIIGYAHHGLAREAMCVFHDML 403

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
             ++V                               P  VT V VL AC  LG +D G
Sbjct: 404 LAEIV-------------------------------PSYVTFVGVLLACAQLGLVDEG 430


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/724 (34%), Positives = 394/724 (54%), Gaps = 51/724 (7%)

Query: 4   LVLEHSSLLALLE---SCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN-GLF 59
           +V +H +L  LL      +S+ +  Q+HG +V  G +   S+  + +    S CK   L 
Sbjct: 135 MVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYD---STLMVCNSLLDSYCKTRSLG 191

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +  LF  +   +   +N L+ GYS+     +A+ L+  M   G   P+ FTF  VL + 
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGF-RPSEFTFAAVLTAG 250

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            ++   + G Q+H  ++K    +++F+ NAL+ FYS    I  A K+F      D +SYN
Sbjct: 251 IQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYN 310

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH--AVVY 237
            LI   A       +L LFR++Q +      F F  + S      +  +G+Q H  A+V 
Sbjct: 311 VLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVT 370

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
             +    S +L+  ++++MYAKC                                 K   
Sbjct: 371 DAI----SEVLVGNSLVDMYAKCD--------------------------------KFGE 394

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A ++F  +  +  V WTA+ISGY Q G     L+LF +M    I  D  T  ++LRAC  
Sbjct: 395 ANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACAN 454

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L +L  GK+LH + I +     N+F  +A++DMYAKCGSI  AL +F ++P  ++    +
Sbjct: 455 LASLTLGKQLHSRIIRSGCLS-NVFSGSALVDMYAKCGSIKEALQMFQEMP--VRNSVSW 511

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           N++IS  AQ+G G  ++  F +M   GL+P+ V+F+++LCACSH GLVEEG Q+F SM  
Sbjct: 512 NALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQ 571

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            Y ++P+ EHY  MVD+L R GR DEA  L+  MP++ + ++W ++L +CR+H+N ++  
Sbjct: 572 VYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAI 631

Query: 537 IAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
            A  +L +++     A YV +SN+ A    W+   +V+K + + GI+K P +S++E    
Sbjct: 632 KAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQK 691

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
            H F A+  SHPQTKEI   L ++  +++  GY P++   + +VDEE K   + YHSE++
Sbjct: 692 THVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERI 751

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+AF LI++     I + KNLR C DCH A K++S+I  REI VRD+ RFH F  G+CSC
Sbjct: 752 AIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSC 811

Query: 716 MDFW 719
            D+W
Sbjct: 812 KDYW 815



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 5/266 (1%)

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +  A ++F  M   K+  + ++MI GY + G +  AR LFD M QR +V+WT +I GY
Sbjct: 56  GDLGAARKLFDEMP-HKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGY 114

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +Q   F +A  LF  M   G+ PD +T+  +L       +++   ++H   ++ V +   
Sbjct: 115 AQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVK-VGYDST 173

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + +  +++D Y K  S+  A  +F  + +  K    FN++++G ++ G    +I +F +M
Sbjct: 174 LMVCNSLLDSYCKTRSLGLACHLFKHMAE--KDNVTFNALLTGYSKEGFNHDAINLFFKM 231

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
           + +G +P   TF  VL A      +E G+Q    ++       +     ++D  ++  R+
Sbjct: 232 QDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRI 291

Query: 501 DEAYGLIQSMPYDANSVIWRALLAAC 526
            EA  L   MP + + + +  L+  C
Sbjct: 292 VEARKLFYEMP-EVDGISYNVLITCC 316


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/601 (39%), Positives = 347/601 (57%), Gaps = 42/601 (6%)

Query: 122  LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            +S F    + H  I  +GL++D  I       Y  F  I+ A  VFE         +N +
Sbjct: 730  ISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVM 789

Query: 182  INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            I G+A       +L L+ KM +  ++PD F F     +C  L+D + GK    V++++L 
Sbjct: 790  IRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGK----VIHQHLV 845

Query: 242  CVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            C G  +++ +  A+++MYAKCG                                 IE AR
Sbjct: 846  CCGCSNDLFVDAALVDMYAKCG--------------------------------DIEAAR 873

Query: 300  QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
             +FD+M  RDLVSWT+MISGY+  G  S+ L  F  M S G+ P+ V++++VL AC  LG
Sbjct: 874  LVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLG 933

Query: 360  ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            AL  G+  H  Y+    F  +I + TA++DMY+KCGS+D A  +F +     K +  +++
Sbjct: 934  ALRKGEWFHS-YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAG--KDLVCWSA 990

Query: 420  IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
            +I+    HG G  +I +F +M   G++P  VTF  VL ACSH GL+EEGK +F+ M   +
Sbjct: 991  MIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEF 1050

Query: 479  GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
             I  ++ +Y CMVDLL R G+L EA  LI++MP + ++ IW +LL ACR+H N  + E  
Sbjct: 1051 VIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKI 1110

Query: 539  GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
               L  L+P H  ++VLLSN+ A   RW E  +VRK+M   G  K  G+S +E++  +H+
Sbjct: 1111 ADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHK 1170

Query: 599  FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
            F    +SHPQ +++   L+++   +K  GYVP T  V+ D++EE KE  +SYHSE+LA+A
Sbjct: 1171 FGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIA 1230

Query: 659  FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
            FGLIN+    T+RITKNLRICGDCH A KL+S+I  R I+VRD  RFH F+ G CSC D+
Sbjct: 1231 FGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDY 1290

Query: 719  W 719
            W
Sbjct: 1291 W 1291



 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 214/693 (30%), Positives = 358/693 (51%), Gaps = 78/693 (11%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L+ L ++C + +   Q+H Q+  +G+ H    +++L S +A   C + L  +R +F +  
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYA--KCAS-LQAARKVFDETP 63

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +PN+ +WN+ +R Y R    +E L L+  M+     +P+NFT P  L +CA L   + G 
Sbjct: 64  HPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK 123

Query: 130 QIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            IH    K   +  D+F+ +AL+  YS  G +  A KVFE     D V + +++ GY Q 
Sbjct: 124 VIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQN 183

Query: 189 KEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV----------- 236
            +P  AL LF +M    C+  D  T V++ SAC +L + + G   H +V           
Sbjct: 184 NDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPL 243

Query: 237 -------YKNLGC--VGSNMLLK---------TAVINMYAKCGLMN--------MAERVF 270
                  Y   GC  + +N+  K         + +I  YA     N        M E+ F
Sbjct: 244 VNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF 303

Query: 271 STMGMSKSTAAWSSMISGYTREGK------------------------------IERARQ 300
               ++  +A  +  +S    EGK                               + A  
Sbjct: 304 EPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVD 363

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF ++ ++D+VSW A++SGY+Q G   +++ +F  M S GI PD V +V +L A   LG 
Sbjct: 364 LFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 423

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
                 LH  Y+    F  N+F+  ++I++Y+KCGS+  A+ +F  +   ++ V +++S+
Sbjct: 424 FQQALCLHG-YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI--VRDVVIWSSM 480

Query: 421 ISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NY 478
           I+    HG G  ++ +F +M +   ++P+ VTF+++L ACSH GLVEEG + F+ M+ +Y
Sbjct: 481 IAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            ++P  EH+G MVDLL R G+L +A  +I  MP  A   +W ALL ACR+H N ++GE A
Sbjct: 541 QLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAA 600

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            + L  L+P H  +Y+LLSN+ A   +W+   ++R  + + G++K  G S +E  G +H 
Sbjct: 601 AKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHS 660

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           FLAS + HP +++I  +L+ +  ++    Y+P+
Sbjct: 661 FLASDRFHPDSQKIYELLRKLEAQMGKEVYIPD 693



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 191/403 (47%), Gaps = 40/403 (9%)

Query: 26   QIHGQIVHSGLNHHISSSQLISFFALSGCK-NGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
            + H +I   GL +    S++++ FA+     N +  + I+F  I NP  F+WN ++RG++
Sbjct: 738  KTHAKIFAYGLQY---DSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 85   RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
                   +L LY+ M+ KG+  P+ F FPF L SCA LS  + G  IH H++  G   DL
Sbjct: 795  TDGRFLSSLELYSKMMEKGL-KPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDL 853

Query: 145  FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
            F+  AL+  Y+  G I  A  VF+    RDLVS+ ++I+GYA        L  F  M+ S
Sbjct: 854  FVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSS 913

Query: 205  CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
             + P+  + +++  AC  L   R G+ FH+ V +       ++L+ TA+++MY+KCG ++
Sbjct: 914  GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQT--GFEFDILVATAIMDMYSKCGSLD 971

Query: 265  MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            +A  +F      K    WS+MI+ Y   G   +A  LFDQM +                 
Sbjct: 972  LARCLFDETA-GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKA---------------- 1014

Query: 325  GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
                           G+ P  VT   VL AC   G L+ GK   Q   E  V  R +   
Sbjct: 1015 ---------------GVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNY 1059

Query: 385  TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
              ++D+  + G +  A+ +   +P      S++ S++     H
Sbjct: 1060 ACMVDLLGRAGQLSEAVDLIENMPVE-PDASIWGSLLGACRIH 1101



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 141/303 (46%), Gaps = 13/303 (4%)

Query: 15   LESCKSLKQALQIHGQIVHSGL------NHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
            L+SC  L   LQ  G+++H  L      N     + L+  +A  G    +  +R++F ++
Sbjct: 825  LKSCAGLSD-LQ-RGKVIHQHLVCCGCSNDLFVDAALVDMYAKCG---DIEAARLVFDKM 879

Query: 69   DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
               ++  W +++ GY+ +    E L  +  M S G++ PN  +   VL +C  L + + G
Sbjct: 880  AVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI-PNRVSILSVLLACGNLGALRKG 938

Query: 129  CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
               H ++I+ G EFD+ +  A++  YS  G ++ A  +F+ +  +DLV ++ +I  Y   
Sbjct: 939  EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIH 998

Query: 189  KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                 A+ LF +M  + ++P   TF  + SAC+       GK +  ++ +    +   + 
Sbjct: 999  GHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEF-VIARKLS 1057

Query: 249  LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
                ++++  + G ++ A  +   M +    + W S++        ++ A ++ D +   
Sbjct: 1058 NYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHL 1117

Query: 309  DLV 311
            D V
Sbjct: 1118 DPV 1120


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 350/559 (62%), Gaps = 15/559 (2%)

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
           G L R +  ++ LI   ++   P  AL L+  +  + + P   T  ++  +   L+    
Sbjct: 31  GQLPRSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMA-LSPAVP 89

Query: 229 GKQFHAV-VYKNLGCVGSN--MLLKTAVINMYAKCGLMNMAERVF---STMGMSKSTAAW 282
           G    A+ V+ +   +G +  +L+  A+I ++A   L ++A+ +    +   +  ST  +
Sbjct: 90  GAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGF-LGSLADGLLLLRTAAAVDAST--F 146

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +++I+ Y R G++  AR LFD+M  R+ VSW+AM++GY Q G   +AL +F +M++  + 
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR 206

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD+  +V VL AC   GAL+ GK +H  Y++      N+F  TA++DMY+KCG +  A+ 
Sbjct: 207 PDDTVLVGVLAACAQHGALEQGKWVHG-YLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF ++    K V  + ++I GLA HG G  ++ +F +ME  G++PD + F+ VLCAC+H 
Sbjct: 266 VFERM--QYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHA 323

Query: 463 GLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLV++G++ F+SM+  YGIKP++EHYGCMVDLLAR+G L EA  +IQ MP + +++IW A
Sbjct: 324 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGA 383

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           L+A CR H+N +  E   +  + LEPD    YVLLSN+ A + R   AR++R LM + G+
Sbjct: 384 LMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGV 443

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVD 640
            K PG S +E NG +H+F+    SHP+ K+I     ++  +++   GY+P+  +V+ D++
Sbjct: 444 DKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIE 503

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEEKE  +S HSEKLA+AF LI+      IRI KNLR+C DCH   KL+S++Y REI+VR
Sbjct: 504 EEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVR 563

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFHLFK+G CSC D+W
Sbjct: 564 DRTRFHLFKEGTCSCKDYW 582



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 159/369 (43%), Gaps = 73/369 (19%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC-----QI 131
           + L+R  SRS  P  AL LY  +L  G++ P   T P +L S A LS    G       +
Sbjct: 41  DALIRALSRSARPHLALPLYAHLLRAGLL-PTPHTLPSLLKSMA-LSPAVPGAAVLALTV 98

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIF--------------------------------GY 159
           H H +K GL+  + + NALI  ++ F                                G 
Sbjct: 99  HTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGR 158

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           + +A  +F+   AR+ VS++ ++NGY Q  +   AL +F +MQ   ++PD    V + +A
Sbjct: 159 LADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAA 218

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C +      GK  H   Y     +  N+   TA+++MY+KCG + +A  VF  M   K+ 
Sbjct: 219 CAQHGALEQGKWVHG--YLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERM-QYKNV 275

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            AW++MI G    G+                                S+A+ LF +MES 
Sbjct: 276 LAWTTMIKGLAMHGR-------------------------------GSEAVMLFAQMESS 304

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           GI PD++  + VL AC   G +D G+ L    +        I     ++D+ A+ G +  
Sbjct: 305 GIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYE 364

Query: 400 ALSVFYKIP 408
           A  +  K+P
Sbjct: 365 AKEMIQKMP 373



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LI+ +A +G    L  +R LF ++   N   W+ ++ GY ++   +EAL ++  M ++
Sbjct: 147 NTLITAYARAG---RLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAE 203

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             V P++     VL +CA+  + + G  +H ++   G++ +LF   AL+  YS  G +  
Sbjct: 204 D-VRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQL 262

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A  VFE    ++++++ T+I G A       A+ LF +M+ S I+PD   F+ +  ACT 
Sbjct: 263 AMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTH 322

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
                 G++    + +  G +   +     ++++ A+ G +  A+ +   M M      W
Sbjct: 323 AGLVDKGRELFDSMVRKYG-IKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIW 381

Query: 283 SSMISG 288
            ++++G
Sbjct: 382 GALMAG 387


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/701 (35%), Positives = 394/701 (56%), Gaps = 49/701 (6%)

Query: 19  KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFI 75
           ++++QA ++H  +  SG L H  S+  L++        +     R      D    + F+
Sbjct: 10  RTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFL 69

Query: 76  WNTLMRGYSR----SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS--GC 129
           ++T +R   R    S  P    VL+  M  +  V P+ FTF F+   C+  S  ++    
Sbjct: 70  FDTALRACFRAGTSSGDPDIPFVLFRRM-RRAAVRPDGFTFHFLFK-CSSSSRPRALLCT 127

Query: 130 QIHCHIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFE-------------------- 168
            +H   ++  L     F+ N+LIH Y+  G   +  + F+                    
Sbjct: 128 MLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKM 187

Query: 169 GSLA-----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G L+           RD++S+ +LI  Y++      A+  F+ M    I PD  T + + 
Sbjct: 188 GMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVL 247

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC++L D  +G   H++V +    +  N+++  A+I+MYAKCG    A  VF  +G  +
Sbjct: 248 SACSQLKDLELGCSLHSLVKEKGMSMSENLVV--ALIDMYAKCGDFGHAREVFDAVGRGR 305

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
              +W+++I GY + G ++ AR LFDQM+ RD++++ +MI+GY   G   +AL LF  M 
Sbjct: 306 RPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMR 365

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
              +  D  T+V++L AC  LGAL  G+ LH   IE  +   +I++ TA++DMY KCG +
Sbjct: 366 RHDLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDIYIGTALLDMYMKCGRV 424

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF ++ K  + V  + ++I+GLA +G+G+  +  F +M   G +P+ V+++ VL 
Sbjct: 425 NEATIVFQRMGK--RDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLT 482

Query: 458 ACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH  L+ EG+ +F+ M + Y I PQ+EHYGCM+DLL R G LDEA  L+++MP   NS
Sbjct: 483 ACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNS 542

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           VIW ++L+ACR+H+   + + A + LL +EPD  A YV L N+  ++ +WE+A ++R LM
Sbjct: 543 VIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLM 602

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           ++  ++K  G+S +   G +H+F+ S KSHP+  EI  ML++++ +LKSAGY P T QV 
Sbjct: 603 EERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVT 662

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
            DVDEEEKE  +  HSEKLA+AFGL++      + I KNLR
Sbjct: 663 VDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLR 703



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/580 (24%), Positives = 276/580 (47%), Gaps = 51/580 (8%)

Query: 20   SLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
            S  +ALQ+HG+++  GL  N  + S+ +  +  +      L     LF ++   N  + N
Sbjct: 808  STYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLS----LFRELPLQNTAMCN 863

Query: 78   TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF-KSGCQIHCHII 136
             ++RG       +E +  +  M  +  +  N  ++ + +  C +   + + G Q+H  ++
Sbjct: 864  VVLRGLGNLKLTEELICCFLDM-RRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVL 922

Query: 137  KFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
            K G +  ++F+ N+L+  YS  G   +  K     L+ D++S+N++++ YA       A+
Sbjct: 923  KAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAV 982

Query: 196  WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +  ++M      P   +FV++ +   +  D ++G Q H +V+K LG   S++ ++T +I+
Sbjct: 983  YYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHK-LGFSCSSVHVQTTLID 1041

Query: 256  MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
            MY KC                                   + +  +F+++    L    +
Sbjct: 1042 MYGKCCC--------------------------------FDHSLAIFNEIPSIALECCNS 1069

Query: 316  MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA---LDFGKRLHQQYI 372
            +I+   +   F  ALE+   M   G+ PD+VT  A ++A + L A   L   + LH   +
Sbjct: 1070 LITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKA-ISLSASPSLTSCQMLHSCLV 1128

Query: 373  ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
            + + F  ++ + +++I  YA  G + ++  +F  +      V  F +IIS  A++G G  
Sbjct: 1129 K-LGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLD--PNVICFTAIISACARYGDGAR 1185

Query: 433  SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMV 491
            ++ +F +M   GLKPD VTF+  +  C   G+ EEG+   E M  +  + P   H+ CMV
Sbjct: 1186 AMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMV 1245

Query: 492  DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
            +LL+RDG + EA  +++  P    +  W +LL +C+ H    +G+ A   L+D+     A
Sbjct: 1246 NLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPA 1305

Query: 552  HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
              + +SN   +    E A +++++ +   ++K  G S IE
Sbjct: 1306 TTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIE 1344



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 160/332 (48%), Gaps = 16/332 (4%)

Query: 10   SLLALLESCKSLKQALQIHGQIVH----SGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
            SLLAL       +  +QIHG IVH    S  + H+ ++ LI  +    C +    S  +F
Sbjct: 1002 SLLALSGKTGDWQLGVQIHG-IVHKLGFSCSSVHVQTT-LIDMYGKCCCFD---HSLAIF 1056

Query: 66   SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++I +  +   N+L+    R +    AL +   M+ +G V+P++ TF   + + +  +S 
Sbjct: 1057 NEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEG-VTPDDVTFSATMKAISLSASP 1115

Query: 126  K-SGCQ-IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
              + CQ +H  ++K G E D+ + ++LI  Y+  G ++++H +FEG L  +++ +  +I+
Sbjct: 1116 SLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIIS 1175

Query: 184  GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
              A+  +   A+ LF +M  S ++PD  TF+   + C +      G+    ++  +   +
Sbjct: 1176 ACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRE-L 1234

Query: 244  GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQ 300
              +      ++N+ ++ G +  A  +     +   T AWSS++      G+    +RA  
Sbjct: 1235 DPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAAN 1294

Query: 301  LFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
            +   + ++D  +   + + ++ +G    AL +
Sbjct: 1295 MLIDVGRKDPATTLQVSNFFNDIGDRETALRI 1326



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 8/179 (4%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD+ S   MI+G+ + G   +A  ++  M + GI     T   +L  C    AL   
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLH 816

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            R     +  +    N F+ +A+++ Y    S   +LS+F ++P  L+  ++ N ++ GL
Sbjct: 817 GR-----VLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELP--LQNTAMCNVVLRGL 869

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFESMLNYGIKP 482
               L E  I  F +M    L+ +G+++   +  C  +G  +E+G+Q    +L  G  P
Sbjct: 870 GNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIP 928


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/783 (33%), Positives = 410/783 (52%), Gaps = 117/783 (14%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSG-------LNHHISSSQLISFFALSGCKNGLFR 60
           + +LL L     +  +A  +H  I+ +        LN+ ISS   +     + CK     
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYA-CK----- 65

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF---------- 110
              +F Q+ +PN++ WNT++  YS+     E   L+ +M  +  VS N+           
Sbjct: 66  ---VFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLI 122

Query: 111 ----------------------TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRN 148
                                 TF  +L   ++    K G QIH H++KFG    +F+ +
Sbjct: 123 YQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGS 182

Query: 149 ALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING-------------YAQVKEPCPAL 195
            L+  YS  G I+ A KVF+    +++V YNTLI G             + +++E     
Sbjct: 183 PLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSIS 242

Query: 196 W------------------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           W                  +FR+M+   +Q D +TF ++ +AC  +   + GKQ HA + 
Sbjct: 243 WTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYII 302

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           +       N+ + +A+++MY KC                                  I+ 
Sbjct: 303 RTD--YKDNIFVASALVDMYCKCK--------------------------------NIKS 328

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A  +F +M  +++VSWTAM+ GY Q G   +A++ F  M+  GI PD+ T+ +V+ +C  
Sbjct: 329 AEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCAN 388

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L +L+ G + H + + + +    I ++ A++ +Y KCGSI+ +  +F +I  + K    +
Sbjct: 389 LASLEEGAQFHARALTSGLISF-ITVSNALVTLYGKCGSIEDSHRLFNEI--SFKDEVTW 445

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
            +++SG AQ G    +I +F  M   GLKPD VTF+ VL ACS  GLVE+G Q FESM+N
Sbjct: 446 TALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMIN 505

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            +GI P  +HY CM+DL +R GR++EA   I  MP+  +++ W  LL++CR + N  IG+
Sbjct: 506 EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGK 565

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A + L++L+P + A YVLLS++ A   +WEE  ++RK M D G++K PG S+I++   +
Sbjct: 566 WAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQV 625

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F A  KS+P + +I   L+ +  K+   GYVP+   V+ DV + EK  ++++HSEKLA
Sbjct: 626 HVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLA 685

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGL+       IR+ KNLR+C DCH A K +S+I  REI+VRD  RFHLFK G CSC 
Sbjct: 686 IAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCG 745

Query: 717 DFW 719
           DFW
Sbjct: 746 DFW 748



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 169/351 (48%), Gaps = 12/351 (3%)

Query: 1   MKRLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKN 56
           ++ L ++  +  ++L +C    +L++  Q+H  I+ +    +I  +S L+  +    CKN
Sbjct: 268 LENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYC--KCKN 325

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            +  +  +F ++   N+  W  ++ GY ++   +EA+  ++ M   GI  P++FT   V+
Sbjct: 326 -IKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI-EPDDFTLGSVI 383

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +SCA L+S + G Q H   +  GL   + + NAL+  Y   G I ++H++F     +D V
Sbjct: 384 SSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEV 443

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++  L++GYAQ  +    + LF  M    ++PD  TF+ + SAC+       G Q    +
Sbjct: 444 TWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESM 503

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
               G V       T +I+++++ G +  A    + M  S    +W++++S     G ++
Sbjct: 504 INEHGIVPIQDHY-TCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMD 562

Query: 297 ---RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
               A +   ++D  +  S+  + S Y+  G + +   L   M   G+  +
Sbjct: 563 IGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKE 613


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 315/479 (65%), Gaps = 6/479 (1%)

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFD 303
           ++ ++   ++ +Y   G++  A RVF T G +     +W++M+SGY + G +E AR++F 
Sbjct: 114 AHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFV 173

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M +R LVSW+AMI    + G FS+AL +F +M   G  PD V +V+VL+ C  LGAL+ 
Sbjct: 174 RMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALER 233

Query: 364 GKRLHQQYIENVVFGR--NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G+ +H+      + GR  N+ L TA++DMY KCG ++ A  VF  +  +   V L+N++I
Sbjct: 234 GRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSH--DVVLWNAMI 291

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
            GLA +G G+ ++ +FR M   G  P+  TFV  LCAC H G V+EG+  F SM ++GI+
Sbjct: 292 GGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRDHGIE 351

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+ EHYGC+ DLL R G L+EA G++  MP + ++  W AL+++C +H N  +GE  G+K
Sbjct: 352 PRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKK 411

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L++LEPD G  YV L N+ A    WE+A+ +RK+M++ G +K  G S+IE NG +H F +
Sbjct: 412 LIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRS 471

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD-EEEKETVVSYHSEKLALAFG 660
               HPQT+ I  +L+DM  +L+  GYV +T QV+ D+D EE+K   +SYHSE+LALAFG
Sbjct: 472 GDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFG 531

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++N      IRI KNLR+C DCH+  KL+S++Y+REI+VRD  RFHLF+ G CSC DFW
Sbjct: 532 ILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 155/375 (41%), Gaps = 75/375 (20%)

Query: 146 IRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGYAQ-----------VKEPC 192
           + N L+  Y   G + +A +VF+  G+ A D+VS+NT+++GY +           V+ P 
Sbjct: 118 VTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMPE 177

Query: 193 PALWLFRKMQDSCI--------------------QPDAFTFVAMFSACTELNDPRIGKQF 232
             L  +  M D+C+                    +PDA   V++   C  L     G+  
Sbjct: 178 RGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWV 237

Query: 233 HAVV-YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
           H  +  + LG    N++L+TA+++MY KCG MN A  VF  +  S     W++MI G   
Sbjct: 238 HRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGV-QSHDVVLWNAMIGGLAM 296

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G  +R                               ALELF +M   G  P+E T V  
Sbjct: 297 NGHGKR-------------------------------ALELFRRMLDKGFVPNESTFVVA 325

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC+  G +D G+ + +   ++ +  R       + D+  + G ++ A  V   +P   
Sbjct: 326 LCACIHTGRVDEGEDVFRSMRDHGIEPRREHY-GCLADLLGRAGLLEEAEGVLLDMPME- 383

Query: 412 KTVSLFNSIISGLAQH---GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              S + +++S    H   G+GE       E+E      DG  +V +    +  GL E+ 
Sbjct: 384 PHASQWGALMSSCLMHNNVGVGERVGKKLIELE----PDDGGRYVALFNLYAVNGLWEDA 439

Query: 469 KQFFESMLNYGIKPQ 483
           K   + M   G K +
Sbjct: 440 KALRKMMEERGAKKE 454



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 133/316 (42%), Gaps = 30/316 (9%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + ++S +   G    L  +R +F ++    +  W+ ++    R+    EAL ++  M
Sbjct: 150 VSWNTMVSGYGKCG---DLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQM 206

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF----GLEFDLFIRNALIHFYS 155
              G   P+      VL +CA L + + G  +H   +K     G   ++ +  AL+  Y 
Sbjct: 207 TGNGF-KPDAVVLVSVLKTCAHLGALERGRWVH-RFLKAERLGGRPGNVMLETALVDMYC 264

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G +N A  VF+G  + D+V +N +I G A       AL LFR+M D    P+  TFV 
Sbjct: 265 KCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVV 324

Query: 216 MFSACTELNDPRIGKQF------HAVVYK--NLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
              AC        G+        H +  +  + GC+           ++  + GL+  AE
Sbjct: 325 ALCACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLA----------DLLGRAGLLEEAE 374

Query: 268 RVFSTMGMSKSTAAWSSMISG---YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            V   M M    + W +++S    +   G  ER  +   +++  D   + A+ + Y+  G
Sbjct: 375 GVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNG 434

Query: 325 GFSQALELFGKMESLG 340
            +  A  L   ME  G
Sbjct: 435 LWEDAKALRKMMEERG 450


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/649 (36%), Positives = 363/649 (55%), Gaps = 38/649 (5%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N+  W  ++ G S++    EA+  +  M   G V P  F F   + +CA L S + G Q+
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQM 63

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           HC  +KFG+  +LF+ + L   YS  G + +A KVFE    +D VS+  +I+GY+++ E 
Sbjct: 64  HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 123

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL  F+KM D  +  D     +   AC  L   + G+  H+ V K LG   S++ +  
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LG-FESDIFVGN 181

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+ +MY+K G M  A  VF                                   + R++V
Sbjct: 182 ALTDMYSKAGDMESASNVFGI-------------------------------DSECRNVV 210

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           S+T +I GY +     + L +F ++   GI P+E T  ++++AC    AL+ G +LH Q 
Sbjct: 211 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 270

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           ++ + F  + F+++ ++DMY KCG ++ A+  F +I     T   +NS++S   QHGLG+
Sbjct: 271 MK-INFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGD--PTEIAWNSLVSVFGQHGLGK 327

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCM 490
            +I +F  M   G+KP+ +TF+++L  CSH GLVEEG  +F SM   YG+ P  EHY C+
Sbjct: 328 DAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCV 387

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           +DLL R GRL EA   I  MP++ N+  W + L ACR+H + ++G++A +KL+ LEP + 
Sbjct: 388 IDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNS 447

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
              VLLSN+ A   +WE+ R VR  M D  ++K PG+S+++     H F A   SHP+  
Sbjct: 448 GALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKS 507

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
            I   L  +  ++K+AGYVP T  V  D+D+  KE ++  HSE++A+AF LI+    + I
Sbjct: 508 AIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPI 567

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            + KNLR+C DCH A K +S++  R+I+VRD  RFH F  G+CSC D+W
Sbjct: 568 IVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 203/427 (47%), Gaps = 18/427 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS +    S  S++   Q+H   +  G+   +   S L   ++  G    +F +  +F +
Sbjct: 45  SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG---AMFDACKVFEE 101

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   W  ++ GYS+    +EAL+ +  M+ +  V+ +       L +C  L + K 
Sbjct: 102 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE-VTIDQHVLCSTLGACGALKACKF 160

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE-GSLARDLVSYNTLINGYA 186
           G  +H  ++K G E D+F+ NAL   YS  G + +A  VF   S  R++VSY  LI+GY 
Sbjct: 161 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 220

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGS 245
           + ++    L +F +++   I+P+ FTF ++  AC        G Q HA V K N      
Sbjct: 221 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINF---DE 277

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  + + +++MY KCGL+  A + F  +G   +  AW+S++S + + G  + A ++F++M
Sbjct: 278 DPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFERM 336

Query: 306 DQR----DLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGA 360
             R    + +++ ++++G S  G   + L+ F  M+ + G+ P E     V+      G 
Sbjct: 337 VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGR 396

Query: 361 LDFGKR-LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           L   K  +++   E   FG   FL    I    + G +  A  +    PKN   + L ++
Sbjct: 397 LKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKL-AAEKLVKLEPKNSGALVLLSN 455

Query: 420 IISGLAQ 426
           I +   Q
Sbjct: 456 IYANERQ 462



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 3/199 (1%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M QR+LVSWTAMISG SQ   FS+A+  F  M   G  P +    + +RAC  LG+++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K++H   ++  + G  +F+ + + DMY+KCG++  A  VF ++P   K    + ++I G 
Sbjct: 61  KQMHCLALKFGI-GSELFVGSNLEDMYSKCGAMFDACKVFEEMP--CKDEVSWTAMIDGY 117

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           ++ G  E ++  F++M    +  D     + L AC      + G+    S++  G +  +
Sbjct: 118 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 177

Query: 485 EHYGCMVDLLARDGRLDEA 503
                + D+ ++ G ++ A
Sbjct: 178 FVGNALTDMYSKAGDMESA 196


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/783 (34%), Positives = 418/783 (53%), Gaps = 88/783 (11%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L++C   + + +  +IHG I+  G +  +  ++ L+S +A     N +  +R LF +++
Sbjct: 16  VLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKC---NDILGARKLFDRMN 72

Query: 70  NPN-IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             N +  WN+++  YS +    EAL L+  M   G V  N +T    L +C   S  K G
Sbjct: 73  ERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAG-VGANTYTLVAALQACEDSSFKKLG 131

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  I+K     D+++ NAL+  +  FG ++ A ++F+    +D +++N++I G+ Q 
Sbjct: 132 MEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQN 191

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL-------- 240
                AL  F  +QD+ ++PD  + +++ +A   L     GK+ HA   KN         
Sbjct: 192 GLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIG 251

Query: 241 ----------------GCVGSNMLLK-----TAVINMYAKCGLMNMAERVF---STMGMS 276
                           G V   M+ K     T VI  YA+      A ++     T GM 
Sbjct: 252 NTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMD 311

Query: 277 KSTAAWSSM---------------ISGYTRE-------------------GKIERARQLF 302
             T    S                + GYT +                   G I  A ++F
Sbjct: 312 VDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMF 371

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           + +  +D+VSWT+MIS Y   G  ++AL +F  M+   + PD +T+V++L A   L AL+
Sbjct: 372 ESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALN 431

Query: 363 FGKRLHQQYIENVVFGRNIFL----TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            GK +H       +F +   L      +++DMYA CGS++ A  VF  I    K++ L+ 
Sbjct: 432 KGKEIH-----GFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVF--ICTRSKSLVLWT 484

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
           ++I+    HG G+ ++ +F  ME   L PD +TF+ +L ACSH GL+ EGK+  E+M   
Sbjct: 485 TMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCK 544

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y ++P  EHY C+VDLL R   L+EAY  ++SM  +  + +W A L ACR+H N K+GEI
Sbjct: 545 YQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEI 604

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A QKLLDL+PD    YVL+SN+ A + RW++  +VR  M   G++K PG S+IE    +H
Sbjct: 605 AAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVH 664

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
            FL   KSHP++ +I   L  +T KL K  GYVP T  V+ +V +EEK  ++  HSE+LA
Sbjct: 665 TFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLA 724

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +A+GL+++     IRITKNLR+C DCH   KL+S+ + RE++VRDA RFH F+ G CSC 
Sbjct: 725 IAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCG 784

Query: 717 DFW 719
           DFW
Sbjct: 785 DFW 787



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 223/449 (49%), Gaps = 46/449 (10%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  ++FTFP VL +C  +     G +IH  IIK G +  +F+ N+L+  Y+    I  A 
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGAR 65

Query: 165 KVFEGSLAR-DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
           K+F+    R D+VS+N++I+ Y+   +   AL LFR+MQ + +  + +T VA   AC + 
Sbjct: 66  KLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDS 125

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
           +  ++G + HA + K+   +  ++ +  A++ M+ + G M+ A R+F  +   K    W+
Sbjct: 126 SFKKLGMEIHAAILKSNQVL--DVYVANALVAMHVRFGKMSYAARIFDELD-EKDNITWN 182

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           SMI+G+T                               Q G +++AL+ F  ++   + P
Sbjct: 183 SMIAGFT-------------------------------QNGLYNEALQFFCGLQDANLKP 211

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           DEV+++++L A   LG L  GK +H   ++N +   N+ +   +IDMY+KC  +  A  V
Sbjct: 212 DEVSLISILAASGRLGYLLNGKEIHAYAMKNWL-DSNLRIGNTLIDMYSKCCCVAYAGLV 270

Query: 404 FYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           F K I K+L +   + ++I+  AQ+     ++ + R+++  G+  D +   + L ACS  
Sbjct: 271 FDKMINKDLIS---WTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGL 327

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
             +   K+     L  G+   M     ++D+ A  G ++ A  + +S+    + V W ++
Sbjct: 328 RCLSHAKEVHGYTLKRGLSDLMMQ-NMIIDVYADCGNINYATRMFESIKCK-DVVSWTSM 385

Query: 523 LAACRLHR---NAKIGEIAGQKLLDLEPD 548
           + +C +H    N  +G     K   +EPD
Sbjct: 386 I-SCYVHNGLANEALGVFYLMKETSVEPD 413



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 9/232 (3%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M  LG+  D  T   VL+AC  +  +  G  +H   I+   +   +F+  +++ MYAKC 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIK-CGYDSIVFVANSLVSMYAKCN 59

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            I  A  +F ++ +    VS +NSIIS  + +G    ++ +FREM+  G+  +  T V  
Sbjct: 60  DILGARKLFDRMNERNDVVS-WNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAA 118

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           L AC      + G +   ++L       +     +V +  R G++  A  +   +  + +
Sbjct: 119 LQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELD-EKD 177

Query: 516 SVIWRALLAACRLH--RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
           ++ W +++A    +   N  +    G +  +L+PD     V L ++LA + R
Sbjct: 178 NITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDE----VSLISILAASGR 225


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/723 (35%), Positives = 405/723 (56%), Gaps = 50/723 (6%)

Query: 4   LVLEHSSLLALLESCKS---LKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGL 58
           +V    +  A L++C+    +K  +QIH  I+ SG  L+ +++++ L++ +   G    +
Sbjct: 156 VVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANA-LVAMYVRFG---KM 211

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             + ++F  ++  +I  WN+++ G+ ++    EAL  +   L    + P+  +   ++ +
Sbjct: 212 PEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYD-LQNADLKPDQVSIISIIVA 270

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
             RL    +G +IH + IK G + ++ + N LI  Y+    ++   + F+    +DL+S+
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISW 330

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
            T   GYAQ K    AL L R++Q   +  DA    ++  AC  LN     K+ H   Y 
Sbjct: 331 TTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHG--YT 388

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
             G + S+ +L+  +I++Y +CG+++ A R+                             
Sbjct: 389 IRGGL-SDPVLQNTIIDVYGECGIIDYAVRI----------------------------- 418

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
              F+ ++ +D+VSWT+MIS Y   G  ++ALE+F  M+  G+ PD VT+V++L A   L
Sbjct: 419 ---FESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSL 475

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
             L  GK +H  +I    F     ++  ++DMYA+CGS++ A  +F    KN + + L+ 
Sbjct: 476 STLKKGKEIHG-FIIRKGFILEGSISNTLVDMYARCGSVEDAYKIF-TCTKN-RNLILWT 532

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
           ++IS    HG GE ++ +F  M+   + PD +TF+ +L ACSH GLV EGK F E M   
Sbjct: 533 AMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCE 592

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y ++P  EHY C+VDLL R   L+EAY +++SM  +    +W ALL ACR+H N +IGE+
Sbjct: 593 YQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEV 652

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A +KLL+L+ D+  +YVL+SN+ A   RW++  +VR  M  SG+ K PG S+IE    +H
Sbjct: 653 AAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIH 712

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
            FL+  K HP+  +I   L  +T KLK   GYV  T  V+ +V EEEK  ++  HSE+LA
Sbjct: 713 AFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLA 772

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +A+GL+ +     IR+TKNLR+CGDCH    L+S  + RE++VRDA RFH FK G CSC 
Sbjct: 773 IAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCG 832

Query: 717 DFW 719
           DFW
Sbjct: 833 DFW 835



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 161/553 (29%), Positives = 269/553 (48%), Gaps = 56/553 (10%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL++C   + L    +IHG  +  G +  +   + L++ +A     NG   +R LF ++ 
Sbjct: 64  LLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDING---ARKLFDRMY 120

Query: 70  NPN-IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             N +  WN+++  YS +    EAL L++ ML  G+V+ N +TF   L +C   S  K G
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVT-NTYTFAAALQACEDSSFIKLG 179

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH  I+K G   D+++ NAL+  Y  FG +  A  +F     +D+V++N+++ G+ Q 
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL  F  +Q++ ++PD  + +++  A   L     GK+ HA   KN     SN+L
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKN--GFDSNIL 297

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +   +I+MYAKC  M+   R F                                D M  +
Sbjct: 298 VGNTLIDMYAKCCCMSYGGRAF--------------------------------DLMAHK 325

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           DL+SWT   +GY+Q   + QALEL  +++  G+  D   + ++L AC GL  L   K +H
Sbjct: 326 DLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIH 385

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              I   +   +  L   +ID+Y +CG ID A+ +F  I    K V  + S+IS    +G
Sbjct: 386 GYTIRGGL--SDPVLQNTIIDVYGECGIIDYAVRIFESI--ECKDVVSWTSMISCYVHNG 441

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
           L   ++ VF  M+  GL+PD VT V++L A      +++GK+    ++  G   +     
Sbjct: 442 LANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN 501

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-- 546
            +VD+ AR G +++AY +      + N ++W A+++A  +H     GE A +  + ++  
Sbjct: 502 TLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMISAYGMH---GYGEAAVELFMRMKDE 557

Query: 547 ---PDHGAHYVLL 556
              PDH     LL
Sbjct: 558 KIIPDHITFLALL 570



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/509 (25%), Positives = 247/509 (48%), Gaps = 51/509 (10%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           +  + ++F ++   +IF WN +M GY  +     AL +Y  M   G VS +++TFP +L 
Sbjct: 8   VLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG-VSFDSYTFPVLLK 66

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-DLV 176
           +C  +     G +IH   IK+G +  +F+ N+L+  Y+    IN A K+F+    R D+V
Sbjct: 67  ACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVV 126

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N++I+ Y+       AL LF +M  + +  + +TF A   AC + +  ++G Q HA +
Sbjct: 127 SWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAI 186

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K+   +  ++ +  A++ MY + G M  A  +F  +   K    W+SM++G+       
Sbjct: 187 LKSGRVL--DVYVANALVAMYVRFGKMPEAAVIFGNL-EGKDIVTWNSMLTGFI------ 237

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                                    Q G +S+ALE F  +++  + PD+V++++++ A  
Sbjct: 238 -------------------------QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            LG L  GK +H   I+N  F  NI +   +IDMYAKC  +      F  +    K +  
Sbjct: 273 RLGYLLNGKEIHAYAIKN-GFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAH--KDLIS 329

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           + +  +G AQ+     ++ + R++++ G+  D     ++L AC     + + K+     +
Sbjct: 330 WTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTI 389

Query: 477 NYGIK-PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR---NA 532
             G+  P +++   ++D+    G +D A  + +S+    + V W +++ +C +H    N 
Sbjct: 390 RGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMI-SCYVHNGLANK 445

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
            +   +  K   LEPD    YV L ++L+
Sbjct: 446 ALEVFSSMKETGLEPD----YVTLVSILS 470



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 160/345 (46%), Gaps = 40/345 (11%)

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           Y   G + +A  +F+    R + ++N ++ GY    E   AL ++R+M+   +  D++TF
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             +  AC  + D   G + H +  K  GC  S + +  +++ +YAKC  +N A ++F  M
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIK-YGC-DSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
            +     +W+S+IS Y+  G                                 ++AL LF
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMC-------------------------------TEALCLF 148

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR--NIFLTTAVIDMY 391
            +M   G+  +  T  A L+AC     +  G ++H   +++   GR  ++++  A++ MY
Sbjct: 149 SEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS---GRVLDVYVANALVAMY 205

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
            + G +  A  +F  +    K +  +NS+++G  Q+GL   ++  F +++   LKPD V+
Sbjct: 206 VRFGKMPEAAVIFGNLEG--KDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVS 263

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
            ++++ A    G +  GK+     +  G    +     ++D+ A+
Sbjct: 264 IISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK 308



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y + G +  A  +FD+M +R + +W AM+ GY   G    ALE++ +M  LG+  D  T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRN--IFLTTAVIDMYAKCGSIDTALSVFYK 406
             +L+AC  +  L  G  +H   I+   +G +  +F+  +++ +YAKC  I+ A  +F +
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIK---YGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +      VS +NSIIS  + +G+   ++ +F EM   G+  +  TF   L AC     ++
Sbjct: 119 MYVRNDVVS-WNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            G Q   ++L  G    +     +V +  R G++ EA  +  ++    + V W ++L  
Sbjct: 178 LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSMLTG 235



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 119/235 (50%), Gaps = 7/235 (2%)

Query: 1   MKRLVLEHSSLLALLESCKSLK---QALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG 57
           M+ + ++ + + ++L +C+ L    +  +IHG  +  GL+  +  + +I  +   G  + 
Sbjct: 355 MEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDY 414

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
             R   +F  I+  ++  W +++  Y  +    +AL +++SM   G+  P+  T   +L+
Sbjct: 415 AVR---IFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGL-EPDYVTLVSILS 470

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +   LS+ K G +IH  II+ G   +  I N L+  Y+  G + +A+K+F  +  R+L+ 
Sbjct: 471 AVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLIL 530

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           +  +I+ Y        A+ LF +M+D  I PD  TF+A+  AC+       GK F
Sbjct: 531 WTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSF 585



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 8/139 (5%)

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MY KCGS+  A  +F K+ +  +++  +N+++ G   +G    ++ ++REM  +G+  D 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSE--RSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDS 58

Query: 450 VTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
            TF  +L AC   G+VE+   G +     + YG    +     +V L A+   ++ A  L
Sbjct: 59  YTFPVLLKAC---GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKL 115

Query: 507 IQSMPYDANSVIWRALLAA 525
              M    + V W ++++A
Sbjct: 116 FDRMYVRNDVVSWNSIISA 134


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/719 (35%), Positives = 412/719 (57%), Gaps = 54/719 (7%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + +A L++C+    +KQ + IH  ++ S    ++  ++ LI+ +A  G    +  +  +F
Sbjct: 320 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFG---KMGEAANIF 376

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +D+ +   WN+++ G+ ++    EAL  Y  M   G   P+      ++ + AR  + 
Sbjct: 377 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG-QKPDLVAVISIIAASARSGNT 435

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G QIH + +K GL+ DL + N+L+  Y+ F  +     +F+    +D+VS+ T+I G+
Sbjct: 436 LNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH 495

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVG 244
           AQ      AL LFR++Q   I  D     ++  AC+ L      K+ H+ ++ K L    
Sbjct: 496 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL---- 551

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S+++L+  ++++Y +CG                                 ++ A ++F+ 
Sbjct: 552 SDLVLQNGIVDVYGECG--------------------------------NVDYAARMFEL 579

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           ++ +D+VSWT+MIS Y   G  ++ALELF  M+  G+ PD +++V++L A   L AL  G
Sbjct: 580 IEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG 639

Query: 365 KRLHQQYIEN--VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           K +H   I    V+ G    L + ++DMYA+CG+++ + +VF  I    K + L+ S+I+
Sbjct: 640 KEIHGFLIRKGFVLEGS---LASTLVDMYARCGTLEKSRNVFNFIRN--KDLVLWTSMIN 694

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
               HG G  +I +FR ME   + PD + FV VL ACSH GL+ EG++F ESM   Y ++
Sbjct: 695 AYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 754

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P  EHY C+VDLL R   L+EAY  ++ M  +  + +W ALL AC++H N ++GEIA QK
Sbjct: 755 PWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQK 814

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           LL+++P++  +YVL+SN+ A   RW++  +VR  M  SG++K PG S+IE    +H F+A
Sbjct: 815 LLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 874

Query: 602 SKKSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
             KSHPQ+ EI   L  +T KL K  GYV  T  V+ +  EEEK  ++  HSE+LA+A+G
Sbjct: 875 RDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYG 934

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++ +    ++RITKNLR+CGDCH   KL+S+ + RE+++RDA RFH FK G CSC D W
Sbjct: 935 MLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 211/451 (46%), Gaps = 44/451 (9%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT----FPFVLNSCARLSSFKSGCQIHCHI 135
           +R   +  S  EA    T + +    SP+ F+    +  VL  C    +   G Q+H H+
Sbjct: 83  LREICKRGSVNEAFQSLTDLFANQ--SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHM 140

Query: 136 IKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           I     F+ +F+   L+  Y   G + +A K+F+G   + + ++N +I  Y    EP  +
Sbjct: 141 ITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGS 200

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L L+R+M+ S I  DA TF  +  AC  L D R G + H +  K  G V S + +  +++
Sbjct: 201 LELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKE-GYV-SIVFVANSIV 258

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
            MY KC  +N A ++F  M   +   +W+SMIS Y+  G+                    
Sbjct: 259 GMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQS------------------- 299

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                        +AL LFG+M+   + P+  T VA L+AC     +  G  +H   +++
Sbjct: 300 ------------IEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
             +  N+F+  A+I MYA+ G +  A ++FY +  +  T+S +NS++SG  Q+GL   ++
Sbjct: 348 SYY-INVFVANALIAMYARFGKMGEAANIFYNM-DDWDTIS-WNSMLSGFVQNGLYHEAL 404

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
             + EM   G KPD V  ++++ A +  G    G Q     +  G+   ++    +VD+ 
Sbjct: 405 QFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMY 464

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           A+   +     +   MP D + V W  ++A 
Sbjct: 465 AKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG 494



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SS+L      K +    +IH  I+  GL+  +  + ++  +    C N  + +R +F  I
Sbjct: 524 SSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYG--ECGNVDYAAR-MFELI 580

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +  ++  W +++  Y  +    EAL L+  M   G V P++ +   +L++ A LS+ K G
Sbjct: 581 EFKDVVSWTSMISCYVHNGLANEALELFHLMKETG-VEPDSISLVSILSAAASLSALKKG 639

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  +I+ G   +  + + L+  Y+  G +  +  VF     +DLV + ++IN Y   
Sbjct: 640 KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMH 699

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                A+ LFR+M+D  I PD   FVA+  AC+       G++F
Sbjct: 700 GCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRF 743


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 364/611 (59%), Gaps = 40/611 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +  +LN+C    + + G ++H H+IK       ++R  L+ FY     + +A KV +   
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            +++VS+  +I+ Y+Q      AL +F +M  S  +P+ FTF  + ++C   +   +GKQ
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ 173

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H ++ K      S++ + +++++MYAK                                
Sbjct: 174 IHGLIVK--WNYDSHIFVGSSLLDMYAKA------------------------------- 200

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+IE AR++F+ + +RD+VS TA+I+GY+Q+G   +ALE+F +++S G+ P+ VT  ++
Sbjct: 201 -GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASL 259

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L A  GL  LD GK+ H   +   +    + L  ++IDMY+KCG++  A  +F  +P+  
Sbjct: 260 LTALSGLALLDHGKQAHCHVLRRELPFYAV-LQNSLIDMYSKCGNLSYAQRLFDNMPE-- 316

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           +T   +N+++ G ++HGLG   + +FR M +   +KPD VT + VL  CSHG + + G  
Sbjct: 317 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLS 376

Query: 471 FFESML--NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            ++ M+   YGIKP  EHYGC+VD+L R GR+DEA+  I+ MP    + +  +LL ACR+
Sbjct: 377 IYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRV 436

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H +  IGE  G +L+++EP++  +YV+LSN+ A   RWE+   VR +M    + K PG S
Sbjct: 437 HLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRS 496

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           +I+H  TLH F A+ ++HP+ +E+   +K++++K+K AGYVP+   V++DVDEE+KE ++
Sbjct: 497 WIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKML 556

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLAL FGLI +     IR+ KNLRIC DCH   K+ S+++ RE+ +RD  RFH  
Sbjct: 557 LGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQI 616

Query: 709 KKGNCSCMDFW 719
            KG CSC D+W
Sbjct: 617 VKGICSCGDYW 627



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 53/425 (12%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ALL +C   ++L++  ++H  ++ +  L      ++L+ F+    C   L  +R +  ++
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC---LEDARKVLDEM 112

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVLNSCARLSSFKS 127
              N+  W  ++  YS++    EAL ++  M+ S G   PN FTF  VL SC R S    
Sbjct: 113 PEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG--KPNEFTFATVLTSCIRASGLAL 170

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH  I+K+  +  +F+ ++L+  Y+  G I  A ++FE    RD+VS   +I GYAQ
Sbjct: 171 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQ 230

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
           +     AL +F+++Q   ++P+  T+ ++ +A + L     GKQ H  V +    +    
Sbjct: 231 LGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE--LPFYA 288

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-D 306
           +L+ ++I+MY+KCG ++ A+R+F  M   ++  +W++M+ GY++ G      +LF  M D
Sbjct: 289 VLQNSLIDMYSKCGNLSYAQRLFDNMP-ERTAISWNAMLVGYSKHGLGREVLELFRLMRD 347

Query: 307 QR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++    D V+  A++SG S            GKME  G+   +           G+ A +
Sbjct: 348 EKRVKPDAVTLLAVLSGCSH-----------GKMEDTGLSIYD-----------GMVAGE 385

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           +G +   ++     +G        ++DM  + G ID A     ++P    T  +  S++ 
Sbjct: 386 YGIKPDTEH-----YG-------CIVDMLGRAGRIDEAFEFIKRMPSK-PTAGVLGSLLG 432

Query: 423 GLAQH 427
               H
Sbjct: 433 ACRVH 437


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/661 (36%), Positives = 372/661 (56%), Gaps = 68/661 (10%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F  I   ++  W  ++  ++ +D  +EAL L++ M   G   PNNFTF  V  +C 
Sbjct: 193 AREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGF-KPNNFTFASVFKACL 251

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L +F  G  +H   +K   E DL++  AL+  Y+  G I++A   FE    +D++ ++ 
Sbjct: 252 GLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSF 311

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I  YAQ  +   A+ +F +M+ + + P+ FTF ++  AC  +    +G Q H  V K +
Sbjct: 312 MIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-I 370

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G + S++ +  A++++YAKCG                                ++E +  
Sbjct: 371 G-LHSDVFVSNALMDVYAKCG--------------------------------RMENSMX 397

Query: 301 LFDQMDQR-DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           LF +   R D+  W  +I G+ Q+G   +AL LF  M    +   EVT  + LRAC  L 
Sbjct: 398 LFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLA 457

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL+ G ++H   ++   F ++I +T A+IDMYAKCGSI  A  VF  + K    VS +N+
Sbjct: 458 ALEPGLQIHSLTVKT-TFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQ-DEVS-WNA 514

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NY 478
           +ISG + HGL                            AC++ GL+++G+ +F SM+ ++
Sbjct: 515 MISGYSMHGL----------------------------ACANAGLLDQGQAYFTSMIQDH 546

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI+P +EHY CMV LL R G LD+A  LI  +P+  + ++WRALL AC +H + ++G I+
Sbjct: 547 GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRIS 606

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            Q +L++EP   A +VLLSNM A   RW+    VRK M   G++K PG S+IE  GT+H 
Sbjct: 607 AQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHS 666

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F     SHP+ + I  ML+ + MK K AGY+PN   V+ DV++EEKE ++  HSE+LAL+
Sbjct: 667 FTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALS 726

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FG+I + S   IRI KNLRIC DCH A K +S++ +REI+VRD  RFH F++G CSC D+
Sbjct: 727 FGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDY 786

Query: 719 W 719
           W
Sbjct: 787 W 787



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 218/452 (48%), Gaps = 43/452 (9%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT---FPFVLNSCARLSSFKSGCQIHC 133
           N L+R   R  S Q A +    +   G VSP+ F    +   L  C +      G  +HC
Sbjct: 6   NFLIRFSRRGFSVQSAKLTQEFV---GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHC 62

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
            I+K G   DLF  N L++ Y    ++ +A K+F+    R+ +S+ TLI GYA+      
Sbjct: 63  EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLE 122

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ LF ++     + + F F  +      ++   +G   HA ++K LG   SN  + TA+
Sbjct: 123 AIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFK-LG-HESNAFVGTAL 180

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+ Y+ CG                                +++ AR++FD +  +D+VSW
Sbjct: 181 IDAYSVCG--------------------------------RVDVAREVFDGILYKDMVSW 208

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           T M++ +++   F +AL+LF +M  +G  P+  T  +V +AC+GL A D GK +H   ++
Sbjct: 209 TGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALK 268

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           +  +  ++++  A++D+Y K G ID A   F +IPK  K V  ++ +I+  AQ    + +
Sbjct: 269 S-RYELDLYVGVALLDLYTKSGDIDDARXAFEEIPK--KDVIPWSFMIARYAQSDQSKEA 325

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           + +F +M    + P+  TF +VL AC+    +  G Q    ++  G+   +     ++D+
Sbjct: 326 VEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDV 385

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            A+ GR++ +  L    P+  +   W  ++  
Sbjct: 386 YAKCGRMENSMXLFAESPHRNDVTPWNTVIVG 417



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 147/579 (25%), Positives = 264/579 (45%), Gaps = 59/579 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   N   + TL++GY+ S    EA+ L+  +  +G    N F F  +L     + 
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREG-HELNPFVFTTILKLLVSMD 153

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             + G  IH  I K G E + F+  ALI  YS+ G ++ A +VF+G L +D+VS+  ++ 
Sbjct: 154 CGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVT 213

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            +A+      AL LF +M+    +P+ FTF ++F AC  L    +GK  H    K+    
Sbjct: 214 CFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSR--Y 271

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ +  A++++Y K G ++ A   F  +   K    WS MI+ Y +  + + A ++F 
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEIP-KKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           QM                      QAL L          P++ T  +VL+AC  +  L+ 
Sbjct: 331 QM---------------------RQALVL----------PNQFTFASVLQACATMEGLNL 359

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G ++H   I+ +    ++F++ A++D+YAKCG ++ ++ +F + P     V+ +N++I G
Sbjct: 360 GNQIHCHVIK-IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHR-NDVTPWNTVIVG 417

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             Q G GE ++ +F  M    ++   VT+ + L AC+    +E G Q     +       
Sbjct: 418 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKD 477

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH----RNAKIGEIAG 539
           +     ++D+ A+ G + +A  L+  +    + V W A+++   +H     NA + +   
Sbjct: 478 IVVTNALIDMYAKCGSIKDAR-LVFDLMNKQDEVSWNAMISGYSMHGLACANAGLLDQGQ 536

Query: 540 QKLLDLEPDHG-----AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP-------GW 587
                +  DHG      HY  +  +L      ++A    KL+D+   Q          G 
Sbjct: 537 AYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKA---VKLIDEIPFQPSVMVWRALLGA 593

Query: 588 SYIEHNGTLHRFLASK--KSHPQTKEIELMLKDMTMKLK 624
             I ++  L R  A    +  PQ K   ++L +M    K
Sbjct: 594 CVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAK 632



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           +S+L    + + L    QIH  ++  GL+  +  S+ L+  +A  G    +  S  LF++
Sbjct: 345 ASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG---RMENSMXLFAE 401

Query: 68  IDNPN-IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
             + N +  WNT++ G+ +    ++AL L+ +ML    V     T+   L +CA L++ +
Sbjct: 402 SPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYR-VQATEVTYSSALRACASLAALE 460

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G QIH   +K   + D+ + NALI  Y+  G I +A  VF+    +D VS+N +I+GY+
Sbjct: 461 PGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYS 520

Query: 187 QVKEPCPALWLFRK--------MQDSCIQP 208
                C    L  +        +QD  I+P
Sbjct: 521 MHGLACANAGLLDQGQAYFTSMIQDHGIEP 550


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 414/738 (56%), Gaps = 35/738 (4%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H +   +L++C    S +    +H  +  SG   ++   + L+S +   G       +R
Sbjct: 144 DHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE---NAR 200

Query: 63  ILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +F ++      ++  WN+++  Y +      A+ ++  M     + P+  +   VL +C
Sbjct: 201 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 260

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A + ++  G Q+H + ++ GL  D+F+ NA++  Y+  G +  A+KVFE    +D+VS+N
Sbjct: 261 ASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWN 320

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE-------LNDPR----I 228
            ++ GY+Q+     AL LF K+++  I+ +  T+ A+ +   +       L+  R     
Sbjct: 321 AMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLC 380

Query: 229 GKQFHAVVYKNL--GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           G + + V   +L  GC  +  LL     + +A   ++N+ E               +++I
Sbjct: 381 GSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDEN-----DPGDDLMVINALI 435

Query: 287 SGYTREGKIERARQLFDQMDQRD--LVSWTAMISGYSQVGGFSQALELFGKMESLG--IH 342
             Y++    + AR +FD +  +D  +V+WT +I G +Q G  ++ALELF +M      + 
Sbjct: 436 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 495

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+  T+   L AC  LGAL FG+++H   + N      +F+   +IDMY+K G +D A  
Sbjct: 496 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 555

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + +    VS + S+++G   HG GE ++ +F EM+ + L PDGVTFV VL ACSH 
Sbjct: 556 VFDNMHQR-NGVS-WTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHS 613

Query: 463 GLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           G+V++G  +F  M  ++G+ P  EHY CMVDLL+R GRLDEA  LI+ MP      +W A
Sbjct: 614 GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 673

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL+ACR++ N ++GE A  +LL+LE  +   Y LLSN+ A    W++  ++R LM ++GI
Sbjct: 674 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 733

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K PG S+++       F A   SHP +++I  +L+D+  ++K+ GYVP+    + DVD+
Sbjct: 734 KKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDD 793

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           EEK  ++S HSEKLALA+G++ +     IRITKNLR CGDCH AF  +S I   EI+VRD
Sbjct: 794 EEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRD 853

Query: 702 AIRFHLFKKGNCSCMDFW 719
           + RFH FK G+CSC  +W
Sbjct: 854 SSRFHHFKNGSCSCRGYW 871



 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 278/538 (51%), Gaps = 35/538 (6%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS-FFALSGCKNGLFRSRILFSQIDNPN 72
           L   CKSL  A   H Q++  GL H    + +IS +   +     L   R L     +  
Sbjct: 54  LFHQCKSLASAELTHQQLLVQGLPH--DPTHIISMYLTFNSPAKALSVLRRLHPS--SHT 109

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +F WN L+R        ++ L LY  M   G   P+++TFPFVL +C  + SF+ G  +H
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW-RPDHYTFPFVLKACGEIPSFRCGASVH 168

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVK 189
             +   G E+++F+ N L+  Y   G   NA +VF+    R   DLVS+N+++  Y Q  
Sbjct: 169 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 190 EPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
           +   A+ +F +M +D  I+PDA + V +  AC  +     GKQ H    ++   +  ++ 
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS--GLFEDVF 286

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  AV++MYAKCG+M  A +VF  M + K   +W++M++GY++ G+ + A  LF+++ + 
Sbjct: 287 VGNAVVDMYAKCGMMEEANKVFERMKV-KDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 345

Query: 309 ----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
               ++V+W+A+I+GY+Q G   +AL++F +M   G  P+ VT+V++L  C   G L  G
Sbjct: 346 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHG 405

Query: 365 KRLHQQYIENVVF------GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           K  H   I+ ++       G ++ +  A+IDMY+KC S   A ++F  IP   ++V  + 
Sbjct: 406 KETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 465

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPD------GVTFVTVLCACSHGGLVEEGKQFF 472
            +I G AQHG    ++ +F +M    L+PD        T    L AC+  G +  G+Q  
Sbjct: 466 VLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGRQIH 521

Query: 473 ESMLNYGIKPQMEHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
             +L    +  M     C++D+ ++ G +D A  +  +M +  N V W +L+    +H
Sbjct: 522 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMH 578


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 383/644 (59%), Gaps = 44/644 (6%)

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++R YS      + +++Y  M   G V P+ F +P ++ S         G   H H++K 
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCG-VRPDAFVYPILIKSAG-----TGGIGFHAHVLKL 54

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G   D F+RNA+I  Y                 AR +  +N +++GY + +    A WLF
Sbjct: 55  GHGSDAFVRNAVIDMY-----------------ARKVADWNAMVSGYWKWESEGQAQWLF 97

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK-TAVINMY 257
               D   + +  T+ AM +   ++ D    +++         C+    ++   A+++ Y
Sbjct: 98  ----DVMPERNVITWTAMVTGYAKVKDLEAARRY-------FDCMPERSVVSWNAMLSGY 146

Query: 258 AKCGLMNMAERVFSTM-GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           A+ GL   A R+F  M G  +++  W++MIS Y R G ++ AR+LF+ M  R++V+W +M
Sbjct: 147 AQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSM 206

Query: 317 ISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           I+GY+Q G  + A+ELF +M  +  + PDEVTMV+V+ AC  LGAL+ G  + +   EN 
Sbjct: 207 IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ 266

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
           +   +I    A+I MY++CGS++ A  VF ++    + V  +N++ISG A HG G  +I 
Sbjct: 267 I-KLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT--RDVVSYNTLISGFAAHGHGVEAIN 323

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           +   M+  G++PD VTF+ VL ACSH GL+EEG++ FES+ +    P ++HY CMVDLL 
Sbjct: 324 LMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD----PAIDHYACMVDLLG 379

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G L++A   ++ MP + ++ ++ +LL A R+H+  ++GE+A  KL +LEPD+  +++L
Sbjct: 380 RVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFIL 439

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+ A   RW++  ++R+ M   G++K  GWS++E+ G LH+F+ + +SH ++ +I  +
Sbjct: 440 LSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQL 499

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L ++  K++ AGY+ +   V+ DV+EEEKE +V  HSEKLA+ + L+ S +   IR+ KN
Sbjct: 500 LIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKN 559

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+C DCH A K++S++  R I+VRD  RFH F  G CSC D+W
Sbjct: 560 LRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 183/429 (42%), Gaps = 61/429 (14%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           +++ LF  +   N+  W  ++ GY++    + A   +  M  + +VS N     +  N  
Sbjct: 92  QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGL 151

Query: 120 AR--LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           A   L  F             G   +    NA+I  Y   G +++A K+F     R++V+
Sbjct: 152 AEEALRLFDE---------MLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT 202

Query: 178 YNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           +N++I GYAQ  +   A+ LF++M     + PD  T V++ SAC  L    +G      +
Sbjct: 203 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 262

Query: 237 YKN---LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            +N   L   G N     A+I MY++CG M  A+RVF  M                    
Sbjct: 263 TENQIKLSISGHN-----AMIFMYSRCGSMEDAKRVFQEMA------------------- 298

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                         RD+VS+  +ISG++  G   +A+ L   M+  GI PD VT + VL 
Sbjct: 299 -------------TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLT 345

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC   G L+ G+++ +   +       I     ++D+  + G ++ A     ++P     
Sbjct: 346 ACSHAGLLEEGRKVFESIKDPA-----IDHYACMVDLLGRVGELEDAKRTMERMPME-PH 399

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFF 472
             ++ S+++    H   +  +      +L  L+PD    F+ +    +  G  ++ ++  
Sbjct: 400 AGVYGSLLNASRIH--KQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIR 457

Query: 473 ESMLNYGIK 481
           E+M   G+K
Sbjct: 458 EAMKKGGVK 466



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 180/372 (48%), Gaps = 26/372 (6%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS 61
           +R V+  +++L+        ++AL++  +++ +  N  ++ + +IS +   G    L  +
Sbjct: 133 ERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNS-VTWNAMISAYMRVG---DLDSA 188

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R LF+ +   N+  WN+++ GY+++     A+ L+  M++   ++P+  T   V+++C  
Sbjct: 189 RKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 248

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L + + G  +   + +  ++  +   NA+I  YS  G + +A +VF+    RD+VSYNTL
Sbjct: 249 LGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTL 308

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+G+A       A+ L   M++  I+PD  TF+ + +AC+       G++    V++++ 
Sbjct: 309 ISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK----VFESIK 364

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----R 297
               +      ++++  + G +  A+R    M M      + S+++      ++E     
Sbjct: 365 DPAIDHY--ACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELA 422

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A +LF +++  +  ++  + + Y+  G +     +   M+  G+           +   G
Sbjct: 423 ANKLF-ELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV-----------KKTTG 470

Query: 358 LGALDFGKRLHQ 369
              +++G +LH+
Sbjct: 471 WSWVEYGGKLHK 482


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/670 (37%), Positives = 381/670 (56%), Gaps = 52/670 (7%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM--LSKGIVSPNNFTFPFVLNS 118
           +R +F +I  P+I  +NTL+  Y+     + AL L+  +  L  G+   + FT   V+ +
Sbjct: 94  ARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGL---DGFTLSGVIIA 150

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF----EGSLARD 174
           C          Q+HC ++  G +    + NA++  YS  G++N A +VF    EG   RD
Sbjct: 151 CGDDVGLVR--QLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGG-GRD 207

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
            VS+N +I    Q +E   A+ LFR+M    ++ D FT  ++ +A T + D   G QFH 
Sbjct: 208 EVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHG 267

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           ++ K+ G  G N  + + +I++Y+KC                                G 
Sbjct: 268 MMIKS-GFHG-NSHVGSGLIDLYSKCA-------------------------------GG 294

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ-ALELFGKMESLGIHPDEVTMVAVLR 353
           +   R++F+++   DLV W  MISG+SQ    S+  +  F +M+  G HPD+ + V V  
Sbjct: 295 MVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTS 354

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  L +   GK++H   I++ +    + +  A++ MY+KCG++  A  VF  +P++   
Sbjct: 355 ACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEH-NM 413

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           VSL NS+I+G AQHG+   S+ +F  M    + P+ +TF+ VL AC H G VEEG+++F 
Sbjct: 414 VSL-NSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFN 472

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M   + I+P+ EHY CM+DLL R G+L EA  +I++MP++  S+ W  LL ACR H N 
Sbjct: 473 MMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNV 532

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++   A  + L LEP + A YV+LSNM A   RWEEA  V++LM + G++K PG S+IE 
Sbjct: 533 ELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEI 592

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF---DVDEEEKETVVS 649
           +  +H F+A   SHP  KEI + + ++  K+K AGYVP+    +    +V+ +EKE  + 
Sbjct: 593 DKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLL 652

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           YHSEKLA+AFGLI++     I + KNLRICGDCH A KL+S I  REI VRD  RFH FK
Sbjct: 653 YHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFK 712

Query: 710 KGNCSCMDFW 719
           +G+CSC D+W
Sbjct: 713 EGHCSCGDYW 722



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 169/340 (49%), Gaps = 12/340 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L      K L   +Q HG ++ SG   N H+ S  LI  +  S C  G+   R +F 
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSG-LIDLY--SKCAGGMVECRKVFE 303

Query: 67  QIDNPNIFIWNTLMRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +I  P++ +WNT++ G+S+  D  ++ +  +  M   G   P++ +F  V ++C+ LSS 
Sbjct: 304 EIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGF-HPDDCSFVCVTSACSNLSSP 362

Query: 126 KSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G Q+H   IK  + ++ + + NAL+  YS  G +++A +VF+     ++VS N++I G
Sbjct: 363 SVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAG 422

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ      +L LF  M    I P+  TF+A+ SAC        G+++  ++ +    + 
Sbjct: 423 YAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFR-IE 481

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQL 301
                 + +I++  + G +  AER+  TM  +  +  W++++    + G +E   +A   
Sbjct: 482 PEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANE 541

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           F Q++  +   +  + + Y+    + +A  +   M   G+
Sbjct: 542 FLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 225/490 (45%), Gaps = 24/490 (4%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TF  +L +C       +G  +H    K  +    ++ N     YS  G ++NA   F+ +
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
              ++ SYNTLIN YA+       + L R++ D   QPD  ++  + +A  +  + R   
Sbjct: 71  QYPNVFSYNTLINAYAKHS----LIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPAL 126

Query: 231 QFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +  A V +   G  G    L   +I      GL+          G     +  +++++ Y
Sbjct: 127 RLFAEVRELRFGLDG--FTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACY 184

Query: 290 TREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
           +R+G +  AR++F +M +   RD VSW AMI    Q     +A+ELF +M   G+  D  
Sbjct: 185 SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMF 244

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDTALSVFY 405
           TM +VL A   +  L  G + H   I++   G N  + + +ID+Y+KC G +     VF 
Sbjct: 245 TMASVLTAFTCVKDLVGGMQFHGMMIKSGFHG-NSHVGSGLIDLYSKCAGGMVECRKVFE 303

Query: 406 KIPKNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
           +I      + L+N++ISG +Q+  L E  I  FREM+  G  PD  +FV V  ACS+   
Sbjct: 304 EIAA--PDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSS 361

Query: 465 VEEGKQFFESMLNYGIK-PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
              GKQ     +   I   ++     +V + ++ G + +A  +  +MP + N V   +++
Sbjct: 362 PSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMI 420

Query: 524 AACRLH----RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
           A    H     + ++ E+  QK  D+ P+      +LS  +  T + EE ++   +M + 
Sbjct: 421 AGYAQHGVEVESLRLFELMLQK--DIAPNTITFIAVLSACV-HTGKVEEGQKYFNMMKER 477

Query: 580 GIQKPPGWSY 589
              +P    Y
Sbjct: 478 FRIEPEAEHY 487


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 384/714 (53%), Gaps = 46/714 (6%)

Query: 11  LLALLESCKSLKQALQIHGQIV---HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           LL L    K+LK    IH  ++    +  N  I  + LI+F+A     N +  +  LF +
Sbjct: 35  LLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKV---NQVSIAHNLFDR 91

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N+  W+ LM GY  +    + + L   M+S+G VSPN +     ++SC      + 
Sbjct: 92  MPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEE 151

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q H  ++K G  F  ++RNAL+  YS    + +A  V+      D+V+YN++++   +
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVE 211

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSN 246
                  L + R M    ++ D  TFV  FS C  L D R+G   H  ++  ++ C   +
Sbjct: 212 NGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVEC---D 268

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             + +A+INMY KCG                                K   AR +FD + 
Sbjct: 269 AYVSSAIINMYGKCG--------------------------------KSLMARGVFDGLQ 296

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            R++V WTA+++   Q G F +AL LF KME   +  +E T   +L AC GL A   G  
Sbjct: 297 SRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSL 356

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH  + E   F  ++ +  A+I+MYAK G I+ A  VF  +    + +  +N++I G + 
Sbjct: 357 LHG-HSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMH--RDIITWNAMICGFSH 413

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           HGLG+ ++ VF++M      P+ VTF  VL AC H GLV+EG  +   ++  +G++P +E
Sbjct: 414 HGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLE 473

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C+V LL++ G+L+EA   +++ P   + V WR LL AC +H+N  +G    + +L++
Sbjct: 474 HYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEM 533

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +P+    Y LLSN+ A+  RW+   +VRKLM D  I+K PG S+IE     H F +    
Sbjct: 534 DPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNK 593

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP   +    +K++   +K  GY P+   V+ DV++E+KE  +SYHSEKLA+A+GL+   
Sbjct: 594 HPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLP 653

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S+ +I + KNLRIC DCH A +L+S++  R I+VRDA RFH F+ G CSC+D+W
Sbjct: 654 SEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/793 (33%), Positives = 415/793 (52%), Gaps = 87/793 (10%)

Query: 4   LVLEHSSLLALLESCKSLKQA---LQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           + ++  +  ++L++C +L ++    +IHG  V  G    +   + LI+ +   G   G  
Sbjct: 141 VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGG-- 198

Query: 60  RSRILFSQI--DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
            +R+LF  I  +  +   WN+++  +    +  EAL L+  M   G+ S N +TF   L 
Sbjct: 199 -ARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVAS-NTYTFVAALQ 256

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
                S  K G  IH  ++K     D+++ NALI  Y+  G + +A +VFE  L RD VS
Sbjct: 257 GVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVS 316

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +NTL++G  Q +    AL  FR MQ+S  +PD  + + + +A     +   GK+ HA   
Sbjct: 317 WNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAI 376

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE----- 292
           +N   + SNM +   +++MYAKC  +      F  M   K   +W+++I+GY +      
Sbjct: 377 RN--GLDSNMQIGNTLVDMYAKCCCVKYMGHAFECM-HEKDLISWTTIIAGYAQNEFHLE 433

Query: 293 --------------------GKIERA-------------------RQLFDQMDQRDLV-- 311
                               G + RA                   R L D M Q  +V  
Sbjct: 434 AINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNV 493

Query: 312 -----------------------SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                                  SWT+MI+     G   +ALELF  ++   I PD + +
Sbjct: 494 YGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAI 553

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++ L A   L +L  GK +H   I    F     + ++++DMYA CG+++ +  +F+ + 
Sbjct: 554 ISALSATANLSSLKKGKEIHGFLIRKGFFLEGP-IASSLVDMYACCGTVENSRKMFHSVK 612

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  + + L+ S+I+    HG G  +IA+F++M    + PD +TF+ +L ACSH GL+ EG
Sbjct: 613 Q--RDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEG 670

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           K+FFE M   Y ++P  EHY CMVDLL+R   L+EAY  +++MP   +S IW ALL AC 
Sbjct: 671 KRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACH 730

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           +H N ++GE+A ++LL  + ++   Y L+SN+ A   RW +  +VR  M  +G++K PG 
Sbjct: 731 IHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGC 790

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKET 646
           S+IE +  +H F+A  KSHPQT +I L L   T  L K  GY+  T  V  +V EEEK  
Sbjct: 791 SWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQ 850

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
           ++  HSE+LAL +GL+ +     IRITKNLRIC DCH  FK+ SE+ +R ++VRDA RFH
Sbjct: 851 MLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFH 910

Query: 707 LFKKGNCSCMDFW 719
            F++G CSC DFW
Sbjct: 911 HFERGLCSCGDFW 923



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/530 (27%), Positives = 252/530 (47%), Gaps = 54/530 (10%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           RL   HS LL L  + K+L Q  Q+H  ++ S L+  +++  ++ +      K G  R  
Sbjct: 44  RLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMY-----GKCGSLRDA 98

Query: 63  I-LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           + +F ++    IF WN LM  +  S    EA+ LY  M   G V+ +  TFP VL +C  
Sbjct: 99  VKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLG-VAIDACTFPSVLKACGA 157

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYN 179
           L   + G +IH   +K G    +F+ NALI  Y   G +  A  +F+G +    D VS+N
Sbjct: 158 LGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++I+ +        AL LFR+MQ+  +  + +TFVA      + +  ++G   H  V K+
Sbjct: 218 SIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKS 277

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                +++ +  A+I MYAKCG M  A RVF +M + +   +W++++SG           
Sbjct: 278 NHF--ADVYVANALIAMYAKCGRMEDAGRVFESM-LCRDYVSWNTLLSGLV--------- 325

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                  Q +L               +S AL  F  M++ G  PD+V+++ ++ A    G
Sbjct: 326 -------QNEL---------------YSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSG 363

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L  GK +H   I N +   N+ +   ++DMYAKC  +      F  + +  K +  + +
Sbjct: 364 NLLKGKEVHAYAIRNGL-DSNMQIGNTLVDMYAKCCCVKYMGHAFECMHE--KDLISWTT 420

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           II+G AQ+     +I +FR++++ G+  D +   +VL ACS  GL  + + F   +  Y 
Sbjct: 421 IIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GL--KSRNFIREIHGYV 476

Query: 480 IKPQMEHY---GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
            K  +        +V++    G +D A    +S+    + V W +++  C
Sbjct: 477 FKRDLADIMLQNAIVNVYGEVGHIDYARRAFESI-RSKDIVSWTSMITCC 525


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/689 (34%), Positives = 383/689 (55%), Gaps = 47/689 (6%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS--SFKSGC 129
           +  + N ++  Y+R+     A+ ++ S+L+ G + P++++F  +L++   L   S +   
Sbjct: 120 DTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCA 179

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYS-----------------------------IFGYI 160
           Q+HC ++K G    L + NAL+  Y                              + GY+
Sbjct: 180 QLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYV 239

Query: 161 NN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
                  A  VFE    +  V +N +I+GY        A  LFR+M    +  D FTF +
Sbjct: 240 RRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 216 MFSACTELNDPRIGKQFHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + SAC  +     GK  H  + +   N     + + +  A++  Y+KCG + +A R+F  
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNF-VPEAALPVNNALVTFYSKCGNIAVARRIFDN 358

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ-ALE 331
           M + K   +W++++SGY     +++A ++F++M  ++ +SW  M+SGY   GGF++ AL+
Sbjct: 359 MTL-KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVH-GGFAEDALK 416

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF KM S  + P + T    + AC  LGAL  GK+LH   ++    G N     A+I MY
Sbjct: 417 LFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNS-AGNALITMY 475

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           A+CG++  A  +F  +P N+ +VS +N++IS L QHG G  ++ +F  M   G+ PD ++
Sbjct: 476 ARCGAVKEAHLMFLVMP-NIDSVS-WNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 452 FVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+TVL AC+H GLV+EG ++FESM  ++GI P  +HY  ++DLL R GR+ EA  LI++M
Sbjct: 534 FLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P++    IW A+L+ CR   + ++G  A  +L  + P H   Y+LLSN  +    W +A 
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAA 653

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VRKLM D G++K PG S+IE    +H FL     HP+  E+   L+ +  K++  GYVP
Sbjct: 654 RVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVP 713

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +T  V+ D++  +KE ++  HSE+LA+ FGL+N     T+ + KNLRIC DCH A   +S
Sbjct: 714 DTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMS 773

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +   REI+VRD  RFH FK G CSC ++W
Sbjct: 774 KAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 187/401 (46%), Gaps = 46/401 (11%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELND--PRIG 229
           RD V +N +I+ YA+     PA+ +FR +  S  ++PD ++F A+ SA   L +   R  
Sbjct: 119 RDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHC 178

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG---LMNMAERVFSTMGMSKSTAAWSSMI 286
            Q H  V K+    G  + +  A++ +Y KC        A +V   M  +K    W++M+
Sbjct: 179 AQLHCSVLKS--GAGGALSVCNALVALYMKCESPEATRDARKVLDEMP-NKDDLTWTTMV 235

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
            GY R G +  AR +F+++D +  V W AMISGY   G   +A ELF +M    +  DE 
Sbjct: 236 VGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEF 295

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIE---NVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           T  +VL AC  +G    GK +H Q I    N V    + +  A++  Y+KCG+I  A  +
Sbjct: 296 TFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRI 355

Query: 404 FYKIPKNLKTVSLFNSIISGLAQH-------------------------------GLGET 432
           F  +   LK V  +N+I+SG  +                                G  E 
Sbjct: 356 FDNM--TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAED 413

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           ++ +F +M    +KP   T+   + AC   G ++ GKQ    ++  G +        ++ 
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           + AR G + EA+ +   MP + +SV W A+++A   H + +
Sbjct: 474 MYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHGHGR 513



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 206/460 (44%), Gaps = 76/460 (16%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++D     +WN ++ GY  S    EA  L+  M+ +  V  + FTF  VL++CA
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLER-VPLDEFTFTSVLSACA 305

Query: 121 RLSSFKSGCQIHCHIIK----FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +  F  G  +H  II+    F  E  L + NAL+ FYS  G I  A ++F+    +D+V
Sbjct: 306 NVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVV 365

Query: 177 SYNTLINGY---------AQVKEPCP----------------------ALWLFRKMQDSC 205
           S+NT+++GY          +V E  P                      AL LF KM+   
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSEN 425

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P  +T+    +AC EL   + GKQ H  + + LG  GSN     A+I MYA+CG +  
Sbjct: 426 VKPCDYTYAGAIAACGELGALKHGKQLHGHIVQ-LGFEGSNS-AGNALITMYARCGAVKE 483

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  +F  M    S  +W++MIS   + G    A +LFD                      
Sbjct: 484 AHLMFLVMPNIDSV-SWNAMISALGQHGHGREALELFD---------------------- 520

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN--VVFGRNIFL 383
                    +M + GI+PD ++ + VL AC   G +D G R  +    +  ++ G + + 
Sbjct: 521 ---------RMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHY- 570

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
            T +ID+  + G I  A  +   +P    T S++ +I+SG    G  E       ++  M
Sbjct: 571 -TRLIDLLGRAGRIGEARDLIKTMPFE-PTPSIWEAILSGCRTSGDMELGAHAADQLFKM 628

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             + DG T++ +    S  G   +  +  + M + G+K +
Sbjct: 629 TPQHDG-TYILLSNTYSAAGCWVDAARVRKLMRDRGVKKE 667



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 155/339 (45%), Gaps = 15/339 (4%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +++L+     C ++  A +I   +    L   +S + ++S +  S C   L ++  +F +
Sbjct: 336 NNALVTFYSKCGNIAVARRIFDNMT---LKDVVSWNTILSGYVESSC---LDKAVEVFEE 389

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N   W  ++ GY      ++AL L+  M S+  V P ++T+   + +C  L + K 
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSEN-VKPCDYTYAGAIAACGELGALKH 448

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H HI++ G E      NALI  Y+  G +  AH +F      D VS+N +I+   Q
Sbjct: 449 GKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQ 508

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV-GSN 246
                 AL LF +M    I PD  +F+ + +AC        G ++   + ++ G + G +
Sbjct: 509 HGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGED 568

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLF 302
               T +I++  + G +  A  +  TM    + + W +++SG    G +E     A QLF
Sbjct: 569 HY--TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF 626

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
               Q D  ++  + + YS  G +  A  +   M   G+
Sbjct: 627 KMTPQHD-GTYILLSNTYSAAGCWVDAARVRKLMRDRGV 664



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 47/285 (16%)

Query: 283 SSMISGYTREGKIERARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           +S+++ Y    ++  A   FD +   +RD V   A+IS Y++    + A+ +F  + + G
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 341 -IHPDEVTMVAVL-----------RACVGL----------GALDF--------------- 363
            + PD+ +  A+L           R C  L          GAL                 
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
             R  ++ ++ +    ++  TT V+  Y + G +  A SVF ++      V  +N++ISG
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVG-YVRRGDVGAARSVFEEVDGKFDVV--WNAMISG 268

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK----QFFESMLNYG 479
               G+   +  +FR M L  +  D  TF +VL AC++ GL   GK    Q      N+ 
Sbjct: 269 YVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFV 328

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
            +  +     +V   ++ G +  A  +  +M    + V W  +L+
Sbjct: 329 PEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTILS 372



 Score = 45.8 bits (107), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
            T+++  YA    +  A+S F  +P   +   L N++IS  A+      ++AVFR +   
Sbjct: 91  ATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 444 G-LKPDGVTFVTVLCACSH 461
           G L+PD  +F  +L A  H
Sbjct: 151 GSLRPDDYSFTALLSAGGH 169


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/710 (34%), Positives = 405/710 (57%), Gaps = 45/710 (6%)

Query: 15  LESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++C  L   +  ++I    V  G + H+   S +++F    G    L  ++ +F  +  
Sbjct: 152 LKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGY---LADAQKVFDGMPE 208

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            ++  WN+++ GY +     E++ ++  M+  G+  P+  T   +L +C +    K G  
Sbjct: 209 KDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGL-RPSPVTMANLLKACGQSGLKKVGMC 267

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
            H +++  G+  D+F+  +L+  YS  G   +A  VF+   +R L+S+N +I+GY Q   
Sbjct: 268 AHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGM 327

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              +  LFR++  S    D+ T V++   C++ +D   G+  H+ + +    + S+++L 
Sbjct: 328 IPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKE--LESHLVLS 385

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           TA+++MY+KCG                                 I++A  +F +M ++++
Sbjct: 386 TAIVDMYSKCG--------------------------------AIKQATIVFGRMGKKNV 413

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           ++WTAM+ G SQ G    AL+LF +M+   +  + VT+V+++  C  LG+L  G+ +H  
Sbjct: 414 ITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAH 473

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           +I +  +  +  +T+A+IDMYAKCG I +A  +F     +LK V L NS+I G   HG G
Sbjct: 474 FIRHG-YAFDAVITSALIDMYAKCGKIHSAEKLFNN-EFHLKDVILCNSMIMGYGMHGHG 531

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGC 489
             ++ V+  M    LKP+  TFV++L ACSH GLVEEGK  F SM  ++ ++PQ +HY C
Sbjct: 532 RYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYAC 591

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           +VDL +R GRL+EA  L++ MP+  ++ +  ALL+ CR H+N  +G     +L+ L+  +
Sbjct: 592 LVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLN 651

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YV+LSN+ AE  +WE    +R LM   G++K PG+S IE    ++ F AS  SHP  
Sbjct: 652 SGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSW 711

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
            +I  +L+++ +++++ GY+P+T  V+ DV+E  K  ++  HSE+LA+AFGL+++     
Sbjct: 712 ADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSL 771

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I+ITKNLR+C DCH   K +S+I +REI+VRDA RFH F  G CSC DFW
Sbjct: 772 IKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 157/330 (47%), Gaps = 33/330 (10%)

Query: 2   KRLV-----LEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHH-ISSSQLISFFALS 52
           +RLV      +  +L++L+  C     L+    +H  I+   L  H + S+ ++  ++  
Sbjct: 336 RRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKC 395

Query: 53  GCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           G    + ++ I+F ++   N+  W  ++ G S++   ++AL L+  M  +  V+ N+ T 
Sbjct: 396 G---AIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEK-VAANSVTL 451

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL- 171
             +++ CA L S   G  +H H I+ G  FD  I +ALI  Y+  G I++A K+F     
Sbjct: 452 VSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFH 511

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            +D++  N++I GY        AL ++ +M +  ++P+  TFV++ +AC+       GK 
Sbjct: 512 LKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKA 571

Query: 232 -FHAV--------VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
            FH++         +K+  C          +++++++ G +  A+ +   M    ST   
Sbjct: 572 LFHSMERDHDVRPQHKHYAC----------LVDLHSRAGRLEEADELVKQMPFQPSTDVL 621

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVS 312
            +++SG           Q+ D++   D ++
Sbjct: 622 EALLSGCRTHKNTNMGIQIADRLISLDYLN 651



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 6/244 (2%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + +I  Y+  G +  AR +FDQ    +     AMI+G+ +     +   LF  M S  I 
Sbjct: 83  AKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIE 142

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            +  T +  L+AC  L   + G  + +  +    F  ++++ +++++   K G +  A  
Sbjct: 143 INSYTCMFALKACTDLLDDEVGMEIIRAAVRRG-FHLHLYVGSSMVNFLVKRGYLADAQK 201

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +P+  K V  +NSII G  Q GL   SI +F EM   GL+P  VT   +L AC   
Sbjct: 202 VFDGMPE--KDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQS 259

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRA 521
           GL + G      +L  G+   +     +VD+ +  G    A  +  SM   + S+I W A
Sbjct: 260 GLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMC--SRSLISWNA 317

Query: 522 LLAA 525
           +++ 
Sbjct: 318 MISG 321


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/645 (37%), Positives = 363/645 (56%), Gaps = 49/645 (7%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLE------FDLFIRNALIHFYSIFGYINNAHKVFEG 169
           L  C  L+  K   Q+HC I K GL+        L    A I       Y   A ++F+ 
Sbjct: 32  LRCCKTLNQLK---QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88

Query: 170 SLARD--LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
            +  D  L   N+LI GY+       A+ L+ +M    + P+ +TF  + S CT++    
Sbjct: 89  DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G Q H  V K +G +  ++ ++  +I+ YA+CG M+   +VF  M   ++  +W+S+I 
Sbjct: 149 EGIQVHGSVVK-MG-LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS-ERNVVSWTSLIC 205

Query: 288 GYTRE-----------------------------GKIERARQLFDQMDQRDLVSWTAMIS 318
           GY R                              G I+ A++LFD+   R+LV +  ++S
Sbjct: 206 GYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILS 265

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH----QQYIEN 374
            Y++ G   +AL +  +M   G  PD VTM++ + A   L  L +GK  H      YIE 
Sbjct: 266 NYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEK 325

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                ++ L TA++DM+A+CG   +A+ VF K+ +  + VS + + I  +A  G GE + 
Sbjct: 326 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTE--RDVSAWTAAIGTMAMEGNGEGAT 383

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
            +F +M + G+KPD V FV VL ACSHGG VE+G   F  M ++GI PQ+EHYGCMVDLL
Sbjct: 384 GLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLL 443

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G L EA+ LI+SMP + N V+W +LLAACR+H+N ++   A +++ +L P     +V
Sbjct: 444 GRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHV 503

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LLSN+ A   +W +  +VR  + + G++K PG S ++ NG +H F +  +SHP+   I L
Sbjct: 504 LLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIAL 563

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
           ML++M  +   AG++P+   V+ DVDE+EKE ++S HSEKLA+AFGLI +     IR+ K
Sbjct: 564 MLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVK 623

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+C DCH   K+ S IY REI+VRD  RFH F++G CSC D+W
Sbjct: 624 NLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 197/402 (49%), Gaps = 75/402 (18%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQI----- 68
           L  CK+L Q  Q+H QI  +GL+   S+ ++L++  A       L  +R  F        
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +  +F+ N+L+RGYS +   +EA++LY  ML  G V+PN++TFPFVL+ C ++++F  G
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H  ++K GLE D+FI+N LIHFY+  G++++ HKVFEG   R++VS+ +LI GYA+ 
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210

Query: 189 KEPCPALWLF-------------------------RKMQDSCI----------------- 206
             P  A+ LF                         +++ D C+                 
Sbjct: 211 DRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 270

Query: 207 ------------------QPDAFTFVAMFSACTELNDPRIGKQFHAV---VYKNLGCVGS 245
                             +PD  T ++  SA  +L D   GK  H      Y     +  
Sbjct: 271 GLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPC 330

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +M L TA+++M+A+CG    A +VF+ M   +  +AW++ I     EG  E A  LF+QM
Sbjct: 331 DMRLNTALVDMFARCGDPQSAMQVFNKM-TERDVSAWTAAIGTMAMEGNGEGATGLFNQM 389

Query: 306 ----DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                + D+V +  +++  S  G   Q L +F  ME  GI P
Sbjct: 390 LIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISP 431


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/638 (37%), Positives = 370/638 (57%), Gaps = 55/638 (8%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFR 60
           R VLE    ++LL SCK++    ++  QI+  G   N +++ + + S+  L      +  
Sbjct: 21  RWVLEEH-FISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQ----MAH 75

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF    +P + +WN + RGY  +   +E + L+  M S   V PN FTFP VL SCA
Sbjct: 76  ARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMD-VRPNCFTFPLVLKSCA 134

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++ +F  G +IHC +IK GLE + F+   LI  YS    I +A+K+F G L R++V++ +
Sbjct: 135 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 194

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY      C  + L R++ D   + D   +  M S   E+ D               
Sbjct: 195 MISGYIL----CNRVALARRLFDLAPERDVVLWNIMVSGYIEIGD--------------- 235

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                                 M  A ++F TM   + T +W++M++GY   G +E   Q
Sbjct: 236 ----------------------MKAARKLFDTMPY-RDTMSWNTMLNGYANNGDVEACEQ 272

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLG 359
           LF++M +R++ SW  +I GY+  G F + L  F +M   G + P++ T+V VL AC  LG
Sbjct: 273 LFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLG 332

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           ALD GK +H  Y   + F  +I++  A+IDMY+KCG I+ A+ VF  +  +LK +  +NS
Sbjct: 333 ALDLGKWVHV-YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESM--DLKDLITWNS 389

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I GLA HG G  ++ +F +M++ G KPDG+TF+ VLC+C+H GLVEEG  +F SM+N Y
Sbjct: 390 MICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEY 449

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            I PQ+EHYGCMVDL  R G LD A   ++ MP +A++VIW ALL ACR+++N  + E+A
Sbjct: 450 SIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 509

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            QKL+ LEP + A+YVLLSN+  +  RW++  +++ LM D+G +K PG S IE N ++  
Sbjct: 510 LQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVE 569

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           F +  + H Q+KEI  +LK +   L+S GY PN ++++
Sbjct: 570 FYSLDERHSQSKEIYGVLKGLMKLLRSFGYGPNMMELL 607


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/703 (34%), Positives = 385/703 (54%), Gaps = 42/703 (5%)

Query: 19  KSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           K L++  Q+H  ++ +G       ++ L++ ++  G    L  +  LF  +   N+  W 
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCG---ELDHALKLFDTMPQRNLVSWT 75

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            ++ G S++    EA+  +  M   G V P  F F   + +CA L S + G Q+HC  +K
Sbjct: 76  AMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQMHCLALK 134

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
           FG+  +LF+ + L   YS  G + +A KVFE    +D VS+  +I+GY+++ E   AL  
Sbjct: 135 FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLA 194

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F+KM D  +  D     +   AC  L   + G+  H+ V K LG   S++ +  A+ +MY
Sbjct: 195 FKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LG-FESDIFVGNALTDMY 252

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
           +K G M  A  VF                                   + R++VS+T +I
Sbjct: 253 SKAGDMESASNVFGI-------------------------------DSECRNVVSYTCLI 281

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            GY +     + L +F ++   GI P+E T  ++++AC    AL+ G +LH Q ++ + F
Sbjct: 282 DGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK-INF 340

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F+++ ++DMY KCG ++ A+  F +I     T   +NS++S   QHGLG+ +I  F
Sbjct: 341 DEDPFVSSILVDMYGKCGLLEHAIQAFDEIGD--PTEIAWNSLVSVFGQHGLGKDAIKFF 398

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
             M   G+KP+ +TF+++L  CSH GLVEEG  +F SM   YG+ P  EHY C++DLL R
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR 458

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            GRL EA   I  MP++ N+  W + L ACR+H + ++G++A +KL+ LEP +    VLL
Sbjct: 459 AGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLL 518

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A   +WE+ R VR  M D  ++K PG+S+++     H F A   SH +   I   L
Sbjct: 519 SNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKL 578

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
             +  ++K+AGYVP T  V  D+D+  KE ++  HSE++A+AF LI+    + I + KNL
Sbjct: 579 DXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNL 638

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+C DCH A K +S++  R+I+VRD  RFH F  G+CSC D+W
Sbjct: 639 RVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 202/427 (47%), Gaps = 18/427 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS +    S  S++   Q+H   +  G+   +   S L   ++  G    +F +  +F +
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG---AMFDACKVFEE 166

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   W  ++ GYS+    +EAL+ +  M+ +  V+ +       L +C  L + K 
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE-VTIDQHVLCSTLGACGALKACKF 225

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE-GSLARDLVSYNTLINGYA 186
           G  +H  ++K G E D+F+ NAL   YS  G + +A  VF   S  R++VSY  LI+GY 
Sbjct: 226 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 285

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGS 245
           + ++    L +F +++   I+P+ FTF ++  AC        G Q HA V K N      
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINF---DE 342

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  + + +++MY KCGL+  A + F  +G   +  AW+S++S + + G  + A + F++M
Sbjct: 343 DPFVSSILVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKFFERM 401

Query: 306 DQR----DLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGA 360
             R    + +++ ++++G S  G   + L+ F  M+ + G+ P E     V+      G 
Sbjct: 402 VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGR 461

Query: 361 LDFGKR-LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           L   K  +++   E   FG   FL    I    + G +  A  +    PKN   + L ++
Sbjct: 462 LKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKL-AAEKLVKLEPKNSGALVLLSN 520

Query: 420 IISGLAQ 426
           I +   Q
Sbjct: 521 IYANERQ 527



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 135/254 (53%), Gaps = 6/254 (2%)

Query: 253 VINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           VI  YAK   +   +++ + +   G +  T   + +++ Y++ G+++ A +LFD M QR+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           LVSWTAMISG SQ   FS+A+  F  M   G  P +    + +RAC  LG+++ GK++H 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             ++  + G  +F+ + + DMY+KCG++  A  VF ++P   K    + ++I G ++ G 
Sbjct: 131 LALKFGI-GSELFVGSNLEDMYSKCGAMFDACKVFEEMP--CKDEVSWTAMIDGYSKIGE 187

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
            E ++  F++M    +  D     + L AC      + G+    S++  G +  +     
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 490 MVDLLARDGRLDEA 503
           + D+ ++ G ++ A
Sbjct: 248 LTDMYSKAGDMESA 261


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/624 (37%), Positives = 369/624 (59%), Gaps = 15/624 (2%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           L   S ++ L+SCKS+    QIH QI   GL+  I S   +  F        L  +  +F
Sbjct: 35  LSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMF 94

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             I  P + I+N +++ +++  + +  LVL++ +   G+  P+NFT+PFV  +   L   
Sbjct: 95  KYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGL-WPDNFTYPFVFKAIGYLGEV 153

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
               ++   + K GLEFD ++RN+LI  Y+     +    +F+    RD++S+N +I+GY
Sbjct: 154 SKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGY 213

Query: 186 AQVKEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            + +    A+ +F +MQ+ S + PD  T V+  SACT L    +GK+ H  V  N   V 
Sbjct: 214 VKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDN---VK 270

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
              ++  A+++MY KCG +++A  VF  M  SK+   W++M+SGY   G++E AR+LF+ 
Sbjct: 271 FTPIIGNALLDMYCKCGCLSIARAVFEEMP-SKNVICWTTMVSGYANCGELEEARELFEG 329

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
              RD+V WTAMI+GY Q   F +A+ LF +M+   + PD+  +V++L  C   GA++ G
Sbjct: 330 SPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG 389

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K +H+   EN +   +  + TA+I+MYAKCG I+ AL +FY +   +K  + + SII GL
Sbjct: 390 KWIHEFIDENRI-PIDAVVGTALIEMYAKCGFIEKALEIFYGL--RVKDTASWTSIICGL 446

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
           A +G    ++ +F +M+  G++PD +TF+ VL ACSHGGLVEEG++FF SM + Y IKP+
Sbjct: 447 AMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPK 506

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI----WRALLAACRLHRNAKIGEIAG 539
           +EHYGC+VDLL R G L+EA  LI+ +P D N  I    + +LL+ACR++ N ++GE   
Sbjct: 507 VEHYGCLVDLLGRAGLLNEAEELIKKIP-DENKAITVPLYGSLLSACRIYGNVEMGERVA 565

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           ++L+  E    + + LL+N+ A   RWE+  +VR+ M D G++K PG S IE +  +H F
Sbjct: 566 KQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEF 625

Query: 600 LASKKSHPQTKEIELMLKDMTMKL 623
            +   SHP+ +EI  ML  M   L
Sbjct: 626 FSGHPSHPEMREIYYMLNIMAKPL 649


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/706 (36%), Positives = 396/706 (56%), Gaps = 48/706 (6%)

Query: 21   LKQALQIHGQIVHSGL-NHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
            L +  ++HG I+ +GL +  I+ S+ L++ +A  G  +   R   L    D  +   WNT
Sbjct: 390  LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVS---WNT 446

Query: 79   LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
            ++    ++   + A++ Y  M+ +G +SP+NF     L+SCA L    +G Q+HC  +K+
Sbjct: 447  IISVLDQNGFCEGAMMNYC-MMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKW 505

Query: 139  GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP-CPALWL 197
            GL+ D  + NAL+  Y   G  + + ++F      D+VS+N+++        P   ++ +
Sbjct: 506  GLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEV 565

Query: 198  FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            F  M  S + P+  TFV + SA + L+   +GKQ HAVV K+                  
Sbjct: 566  FSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKH------------------ 607

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLVSWTAM 316
                            G  +  A  ++++S Y + G ++   QLF  M  +RD VSW +M
Sbjct: 608  ----------------GAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSM 651

Query: 317  ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
            ISGY   G   + ++    M       D  T   VL AC  + AL+ G  +H   I + +
Sbjct: 652  ISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQL 711

Query: 377  FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
               ++ + +A++DMY+KCG ID A  VF  + +  K    +NS+ISG A+HGLGE ++ +
Sbjct: 712  -ESDVVVESALLDMYSKCGRIDYASKVFNSMSQ--KNEFSWNSMISGYARHGLGEKALEI 768

Query: 437  FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
            F EM+  G  PD VTFV+VL ACSH GLV+ G  +FE M ++GI P +EHY C++DLL R
Sbjct: 769  FEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGR 828

Query: 497  DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK---IGEIAGQKLLDLEPDHGAHY 553
             G+L +    I  MP   N++IWR +L ACR  ++     +G+ A + LL+LEP +  +Y
Sbjct: 829  AGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNY 888

Query: 554  VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
            VL SN  A T RWE+  + R  M  + ++K  G S++     +H F+A  +SHP TKEI 
Sbjct: 889  VLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIY 948

Query: 614  LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
              L  +  K+K+AGYVP T   ++D++EE KE ++SYHSEKLA+AF L  S S   IRI 
Sbjct: 949  EKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIM 1008

Query: 674  KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+CGDCH AF+ +S+I  R+I++RD+IRFH F+ G CSC D+W
Sbjct: 1009 KNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 242/534 (45%), Gaps = 65/534 (12%)

Query: 13  ALLESCKS-----LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGL-FRSRILF 65
           ++L +C+      L  A+Q+HG +  +    + +  + LIS +    C  GL  +++ +F
Sbjct: 165 SVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYG--NCSVGLPLQAQQVF 222

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML---SKGIVSPNNFTFPFVLNSCARL 122
                 ++  WN LM  Y++         L+ +ML   S   + PN  TF  ++ + + L
Sbjct: 223 DTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATS-L 281

Query: 123 SSFKSGC--QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           SS  SG   Q+   ++K G   DL++ +AL+  ++  G ++ A  +F     R+ V+ N 
Sbjct: 282 SSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNG 341

Query: 181 LINGYAQVKEPCP--ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG----KQFHA 234
           LI G   VK+ C   A+ +F   +DS +  +  TFV + SA  E + P  G    ++ H 
Sbjct: 342 LIVGL--VKQHCSEEAVGIFMGTRDSFVV-NTDTFVVLLSAVAEFSIPEDGLMRGREVHG 398

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            + +  G +   + L   ++NMYAKCG                                 
Sbjct: 399 HILRT-GLIDLKIALSNGLVNMYAKCG--------------------------------A 425

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           I++A ++F  +  RD VSW  +IS   Q G    A+  +  M    I P     ++ L +
Sbjct: 426 IDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSS 485

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           C  L  L  G+++H    + V +G ++   ++ A++ MY  CG+   +  +F  + ++  
Sbjct: 486 CASLRLLTAGQQVH---CDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEH-- 540

Query: 413 TVSLFNSIISGL-AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            +  +NSI+  + + H     S+ VF  M   GL P+ VTFV +L A S   ++E GKQ 
Sbjct: 541 DIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQV 600

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +L +G          ++   A+ G +D    L  SM    ++V W ++++ 
Sbjct: 601 HAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISG 654



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 227/515 (44%), Gaps = 57/515 (11%)

Query: 26  QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           ++H ++V  GL H +  S+ L++ +A  G +  L  +R +F  +   N   W  L+ GY 
Sbjct: 77  RLHLELVKRGLTHDLFLSNHLVNLYA-KGSR--LAAARQVFDGMLERNAVSWTCLVSGYV 133

Query: 85  RSDSPQEALVLYTSMLSKG--IVSPNNFTFPFVLNSC--ARLSSFKSGCQIHCHIIKFGL 140
            S    EA  ++ +ML +G     P  FTF  VL +C  A         Q+H  + K   
Sbjct: 134 LSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 141 EFDLFIRNALIHFYS--IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
             +  + NALI  Y     G    A +VF+ +  RDL+++N L++ YA+         LF
Sbjct: 194 ASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLF 253

Query: 199 RKM--QDSCIQ--PDAFTFVAMFSACTELNDPRIG--KQFHAVVYKNLGCVGSNMLLKTA 252
             M   DS I+  P+  TF ++ +A T L+    G   Q  A V K+     S++ + +A
Sbjct: 254 MAMLHDDSAIELRPNEHTFGSLITA-TSLSSCSSGVLDQVFARVLKSGS--SSDLYVGSA 310

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +++ +A                                R G ++ A+ +F  + +R+ V+
Sbjct: 311 LVSAFA--------------------------------RHGMLDEAKDIFINLKERNAVT 338

Query: 313 WTAMISGYSQVGGFSQALELF-GKMESLGIHPDE--VTMVAVLRACVGLGALDFGKRLHQ 369
              +I G  +     +A+ +F G  +S  ++ D   V + AV    +    L  G+ +H 
Sbjct: 339 LNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHG 398

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             +   +    I L+  +++MYAKCG+ID A  VF  +    +    +N+IIS L Q+G 
Sbjct: 399 HILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVS--WNTIISVLDQNGF 456

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
            E ++  +  M    + P     ++ L +C+   L+  G+Q     + +G+         
Sbjct: 457 CEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNA 516

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           +V +    G   E++ +  SM  + + V W +++ 
Sbjct: 517 LVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIMG 550


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 343/560 (61%), Gaps = 17/560 (3%)

Query: 76  WNTLMRGYSRSDSP--------QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +N  +R  S SD          +  L LY ++L  G   P++ TFPF+L +CARL  +  
Sbjct: 84  YNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGY 143

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G     H+++ GL+ D+F+ NA  HF SI G + +A ++F+ S  RDLVS+NTLI GY +
Sbjct: 144 GDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVR 203

Query: 188 VKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
              P  AL LF +M  +D+ ++PD  T +A  S C ++ D  +G++ H  V  +   V  
Sbjct: 204 RGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSD--GVSC 261

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            + L  A+++MY KCG + MA+ VF  +   ++  +W++MI G+ + G ++ AR++FD+M
Sbjct: 262 TVRLMNALMDMYIKCGSLEMAKSVFERIE-HRTVVSWTTMIVGFAKFGLMDDARKVFDEM 320

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            +RD+  W A+++GY Q     +AL LF +M+   + PDE+TMV +L AC  LGAL+ G 
Sbjct: 321 PERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGM 380

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H+ YIE      ++ L T++IDMYAKCG+I+ A+ +F +IP+  K    + ++I GLA
Sbjct: 381 WVHR-YIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPE--KNALTWTAMICGLA 437

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            HG    +I  FR M  +G KPD +TF+ VL AC H GLV+EG++FF  M   Y ++ +M
Sbjct: 438 NHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKM 497

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           +HY CM+DLL R G LDEA  L+ +MP + ++V+W A+  ACR+  N  +GE A  KL++
Sbjct: 498 KHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVE 557

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           ++P     YVLL+NM AE    ++A +VR +M   G++K PG S IE NG +H F+   K
Sbjct: 558 IDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDK 617

Query: 605 SHPQTKEIELMLKDMTMKLK 624
           SH  +  I   L ++T+++K
Sbjct: 618 SHMDSHAIYDCLHEITLQIK 637


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/703 (34%), Positives = 387/703 (55%), Gaps = 43/703 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           +++    Q+H  +V  G    + +++ L+  +   G  +    + ++F ++ + ++  WN
Sbjct: 216 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD---IASVIFEKMPDSDVVSWN 272

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            L+ G   +     A+ L   M S G+V PN F    +L +CA   +F  G QIH  +IK
Sbjct: 273 ALISGCVLNGHDHRAIELLLQMKSSGLV-PNVFMLSSILKACAGAGAFDLGRQIHGFMIK 331

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              + D +I   L+  Y+   ++++A KVF+    RDL+ +N LI+G +       A  +
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI 391

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F  ++   +  +  T  A+  +   L      +Q HA+  K +G +    ++   +I+ Y
Sbjct: 392 FYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEK-IGFIFDAHVV-NGLIDSY 449

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KC  ++ A RVF                                ++    D+++ T+MI
Sbjct: 450 WKCSCLSDAIRVF--------------------------------EECSSGDIIAVTSMI 477

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I+   F
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ-F 536

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F   A++  YAKCGSI+ A   F  +P+  + V  ++++I GLAQHG G+ ++ +F
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLPE--RGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M   G+ P+ +T  +VLCAC+H GLV+E K++F SM   +GI    EHY CM+DLL R
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+LD+A  L+ SMP+ AN+ +W ALL A R+H++ ++G++A +KL  LEP+    +VLL
Sbjct: 655 AGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           +N  A +  W E  +VRKLM DS I+K P  S++E    +H F+   KSHP TKEI   L
Sbjct: 715 ANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKL 774

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
            ++   +  AGY+PN    + D+D  EKE ++S+HSE+LA+AF L+++     IR+ KNL
Sbjct: 775 DELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNL 834

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RIC DCH+AFK +S I  REI++RD  RFH F+ G CSC D+W
Sbjct: 835 RICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 219/449 (48%), Gaps = 46/449 (10%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S  L    + ++L     +H  ++ SG    + +  LISF+  S C+      R+ F +I
Sbjct: 8   SQQLTRYAAAQALLPGAHLHANLLKSGFLASLRN-HLISFY--SKCRRPCCARRV-FDEI 63

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +P    W++L+  YS +  P+ A+  +  M ++G+   N F  P VL     +   + G
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCC-NEFALPVVLKC---VPDAQLG 119

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLINGYAQ 187
            Q+H   +  G   D+F+ NAL+  Y  FG++++A +VF E    R+ VS+N L++ Y +
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 179

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   A+ +F +M  S IQP  F F  + +ACT   +   G+Q HA+V + +G    ++
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR-MG-YEKDV 237

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
               A+++MY K G +++A  +F  M  S    +W+++ISG    G   R          
Sbjct: 238 FTANALVDMYVKMGRVDIASVIFEKMPDS-DVVSWNALISGCVLNGHDHR---------- 286

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                A+EL  +M+S G+ P+   + ++L+AC G GA D G+++
Sbjct: 287 ---------------------AIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 325

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   I+      + ++   ++DMYAK   +D A+ VF  +    + + L+N++ISG +  
Sbjct: 326 HGFMIKANA-DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH--RDLILWNALISGCSHG 382

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVL 456
           G  + + ++F  +   GL  +  T   VL
Sbjct: 383 GRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 188/401 (46%), Gaps = 46/401 (11%)

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H +++K G  F   +RN LI FYS       A +VF+       VS+++L+  Y+ 
Sbjct: 23  GAHLHANLLKSG--FLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  A+  F  M+   +  + F    +      + D ++G Q HA+        GS++
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMAT--GFGSDV 135

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-D 306
            +  A++ MY   G M                                + AR++FD+   
Sbjct: 136 FVANALVAMYGGFGFM--------------------------------DDARRVFDEAGS 163

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +R+ VSW  ++S Y +      A+++FG+M   GI P E     V+ AC G   +D G++
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 223

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   +  + + +++F   A++DMY K G +D A  +F K+P +   V  +N++ISG   
Sbjct: 224 VHAMVVR-MGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS--DVVSWNALISGCVL 280

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +G    +I +  +M+  GL P+     ++L AC+  G  + G+Q    M+        ++
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD-DY 339

Query: 487 YGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
            G  +VD+ A++  LD+A  +   M +  + ++W AL++ C
Sbjct: 340 IGVGLVDMYAKNHFLDDAMKVFDWMSH-RDLILWNALISGC 379


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/719 (35%), Positives = 410/719 (57%), Gaps = 54/719 (7%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + +A L++C+    +KQ + IH  ++ S    ++  ++ LI+ +A  G    +  +  +F
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFG---KMGEAANIF 340

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +D+ +   WN+++ G+ ++    EAL  Y  M   G   P+      ++ + AR  + 
Sbjct: 341 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG-QKPDLVAVISIIAASARSGNT 399

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G QIH + +K GL+ DL + N+L+  Y+ F  +     +F+    +D+VS+ T+I G+
Sbjct: 400 LHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH 459

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVG 244
           AQ      AL LFR++Q   I  D     ++  AC+ L      K+ H+ ++ K L    
Sbjct: 460 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL---- 515

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S+++L+  ++++Y +CG                                 ++ A ++F+ 
Sbjct: 516 SDLVLQNGIVDVYGECG--------------------------------NVDYAARMFEL 543

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           ++ +D+VSWT+MIS Y   G  ++ALELF  M+  G+ PD +++V++L A   L AL  G
Sbjct: 544 IEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG 603

Query: 365 KRLHQQYIEN--VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           K +H   I    V+ G    L + ++DMYA+CG+++ + +VF  I    K + L+ S+I+
Sbjct: 604 KEIHGFLIRKGFVLEGS---LASTLVDMYARCGTLEKSRNVFNFIRN--KDLVLWTSMIN 658

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
               HG G  +I +FR ME   + PD + FV VL ACSH GL+ EG++F ESM   Y ++
Sbjct: 659 AYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 718

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P  EHY C+VDLL R   L+EAY  ++ M  +  + +W ALL AC++H N ++GEIA QK
Sbjct: 719 PWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQK 778

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           LL+++P++  +YVL+SN+ +   RW++   VR  M  SG++K PG S+IE    +H F+A
Sbjct: 779 LLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 838

Query: 602 SKKSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
             KSHPQ+ EI   L  +T KL K  GYV  T  V+ +  EEEK  ++  HSE+LA+A+G
Sbjct: 839 RDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYG 898

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++ +    ++RITKNLR+CGDCH   KL+S+ + RE+++RDA RFH FK G CSC D W
Sbjct: 899 MLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 212/452 (46%), Gaps = 46/452 (10%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT----FPFVLNSCARLSSFKSGCQIHCHI 135
           +R   +  S  EA    T + +    SP+ F+    +  VL  C    +   G Q+H H+
Sbjct: 47  LREICKRGSVNEAFQSLTDLFANQ--SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHM 104

Query: 136 IKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           I     F+ +F+   L+  Y   G + +A K+F+G   + + ++N +I  Y    EP  +
Sbjct: 105 ITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGS 164

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L L+R+M+ S I  DA TF  +  AC  L D R G + H +  K  G V S + +  +++
Sbjct: 165 LELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKE-GYV-SIVFVANSIV 222

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK-IERARQLFDQMDQRDLVSW 313
            MY KC  +N A ++F  M   +   +W+SMIS Y+  G+ IE                 
Sbjct: 223 GMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE----------------- 265

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                          AL LFG+M+   + P+  T VA L+AC     +  G  +H   ++
Sbjct: 266 ---------------ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 310

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           +  +  N+F+  A+I MYA+ G +  A ++FY +  +  T+S +NS++SG  Q+GL   +
Sbjct: 311 SSYY-INVFVANALIAMYARFGKMGEAANIFYNM-DDWDTIS-WNSMLSGFVQNGLYHEA 367

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           +  + EM   G KPD V  ++++ A +  G    G Q     +  G+   ++    +VD+
Sbjct: 368 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDM 427

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            A+   +     +   MP D + V W  ++A 
Sbjct: 428 YAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG 458



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SS+L      K +    +IH  I+  GL+  +  + ++  +    C N  + +R +F  I
Sbjct: 488 SSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYG--ECGNVDYAAR-MFELI 544

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +  ++  W +++  Y  +    EAL L+  M   G V P++ +   +L++ A LS+ K G
Sbjct: 545 EFKDVVSWTSMISCYVHNGLANEALELFHLMKETG-VEPDSISLVSILSAAASLSALKKG 603

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  +I+ G   +  + + L+  Y+  G +  +  VF     +DLV + ++IN Y   
Sbjct: 604 KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMH 663

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                A+ LFR+M+D  I PD   FVA+  AC+       G++F
Sbjct: 664 GCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRF 707


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/597 (38%), Positives = 343/597 (57%), Gaps = 37/597 (6%)

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G +IH  +   G       +N L+  Y+  G ++ A  +F G L R +VS++ +I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 185 YAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           YA       AL LF +M+ D  ++P+A TF  +F+AC  + D   G++ HA+   +    
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            SN +L+ A++NMY +CG                                 +E AR++FD
Sbjct: 121 SSNAILENALLNMYVRCG--------------------------------SLEEARKVFD 148

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            MD  D  SWT+MI+  ++     +ALELF +M   GI P  VT+ +VL AC   GAL  
Sbjct: 149 TMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKV 208

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK++H + ++   F  ++   TA++DMYAKCGS++ +  VF  + +   +VS + ++I+ 
Sbjct: 209 GKQIHSR-LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAM-ETRNSVS-WTAMIAA 265

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKP 482
           LAQHG G+ ++ +F+EM L G+  D  TF+ VL ACSH GL++E  +FF SM+ +Y I P
Sbjct: 266 LAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAP 325

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
              HY   +D + R GRL +A  LI SMP+   ++ W+ LL ACR+H  A+      + L
Sbjct: 326 TETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELL 385

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
             L P+    Y LL N+ A T R+ +  +VRK M D G++K PG S+IE    +H F+A 
Sbjct: 386 SKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAG 445

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            ++HP   EI L L+ +  +++ AGYVPNT  V+  V+EEEKE ++  HSEKLA+AFGLI
Sbjct: 446 DRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLI 505

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +     + I KNLR+C DCH A K++++I RR I+VRD  RFH F+ G CSC D+W
Sbjct: 506 ATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 170/334 (50%), Gaps = 14/334 (4%)

Query: 21  LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           +++  +IH ++   G +   I+ + L+S +A  GC   L  +R +F+ I    +  W+ +
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGC---LDEARAIFNGILERTVVSWSAM 57

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           +  Y+     QEAL+L+  M + G V PN  TF  V N+C  +   + G +IH   +  G
Sbjct: 58  IGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASG 117

Query: 140 --LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                +  + NAL++ Y   G +  A KVF+     D  S+ ++I    +  E   AL L
Sbjct: 118 ELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALEL 177

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +M    I P + T  ++ +AC      ++GKQ H+ +  +     S++L +TA+++MY
Sbjct: 178 FHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRL--DASGFHSSVLAQTALLDMY 235

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSW 313
           AKCG +  + +VF+ M  ++++ +W++MI+   + G+ + A +LF +M+      D  ++
Sbjct: 236 AKCGSLECSSKVFTAM-ETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTF 294

Query: 314 TAMISGYSQVGGFSQALELFGKM-ESLGIHPDEV 346
             ++   S  G   ++LE F  M E   I P E 
Sbjct: 295 ICVLRACSHAGLIKESLEFFHSMVEDYAIAPTET 328



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 150/329 (45%), Gaps = 11/329 (3%)

Query: 19  KSLKQALQIHGQIVHSG---LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
           + L+Q  +IH   + SG    ++ I  + L++ +   G    L  +R +F  +D+P+ F 
Sbjct: 101 EDLEQGREIHALAMASGELKSSNAILENALLNMYVRCG---SLEEARKVFDTMDHPDAFS 157

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W +++   + +    EAL L+  M  +GI  P + T   VLN+CA   + K G QIH  +
Sbjct: 158 WTSMITACTENCELLEALELFHRMNLEGI-PPTSVTLASVLNACACSGALKVGKQIHSRL 216

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
              G    +  + AL+  Y+  G +  + KVF     R+ VS+  +I   AQ  +   AL
Sbjct: 217 DASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEAL 276

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            LF++M    +  DA TF+ +  AC+     +   +F   + ++     +      A ++
Sbjct: 277 ELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRA-LD 335

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR---QLFDQMDQRDLVS 312
              + G +  AE +  +M     T  W ++++      + ERA    +L  ++   D ++
Sbjct: 336 TIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMA 395

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGI 341
           +T + + Y+  G +   + +   M   G+
Sbjct: 396 YTLLGNVYAATGRYGDQMRVRKGMTDRGL 424


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/638 (37%), Positives = 370/638 (57%), Gaps = 55/638 (8%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFR 60
           R VLE    ++LL SCK++    ++  QI+  G   N +++ + + S+  L      +  
Sbjct: 63  RWVLEEH-FISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQ----MAH 117

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF    +P + +WN + RGY  +   +E + L+  M S   V PN FTFP VL SCA
Sbjct: 118 ARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMD-VRPNCFTFPLVLKSCA 176

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++ +F  G +IHC +IK GLE + F+   LI  YS    I +A+K+F G L R++V++ +
Sbjct: 177 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 236

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+GY      C  + L R++ D   + D   +  M S   E+ D               
Sbjct: 237 MISGYIL----CNRVALARRLFDLAPERDVVLWNIMVSGYIEIGD--------------- 277

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                                 M  A ++F TM   + T +W++M++GY   G +E   Q
Sbjct: 278 ----------------------MKAARKLFDTMPY-RDTMSWNTMLNGYANNGDVEACEQ 314

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLG 359
           LF++M +R++ SW  +I GY+  G F + L  F +M   G + P++ T+V VL AC  LG
Sbjct: 315 LFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLG 374

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           ALD GK +H  Y   + F  +I++  A+IDMY+KCG I+ A+ VF  +  +LK +  +NS
Sbjct: 375 ALDLGKWVHV-YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESM--DLKDLITWNS 431

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I GLA HG G  ++ +F +M++ G KPDG+TF+ VLC+C+H GLVEEG  +F SM+N Y
Sbjct: 432 MICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEY 491

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            I PQ+EHYGCMVDL  R G LD A   ++ MP +A++VIW ALL ACR+++N  + E+A
Sbjct: 492 SIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 551

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            QKL+ LEP + A+YVLLSN+  +  RW++  +++ LM D+G +K PG S IE N ++  
Sbjct: 552 LQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVE 611

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
           F +  + H Q+KEI  +LK +   L+S GY PN ++++
Sbjct: 612 FYSLDERHSQSKEIYGVLKGLMKLLRSFGYEPNMMELL 649


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/703 (34%), Positives = 387/703 (55%), Gaps = 43/703 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           +++    Q+H  +V  G    + +++ L+  +   G  +    + ++F ++ + ++  WN
Sbjct: 123 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD---IASVIFEKMPDSDVVSWN 179

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            L+ G   +     A+ L   M S G+V PN F    +L +CA   +F  G QIH  +IK
Sbjct: 180 ALISGCVLNGHDHRAIELLLQMKSSGLV-PNVFMLSSILKACAGAGAFDLGRQIHGFMIK 238

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              + D +I   L+  Y+   ++++A KVF+    RDL+ +N LI+G +       A  +
Sbjct: 239 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI 298

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F  ++   +  +  T  A+  +   L      +Q HA+  K +G +    ++   +I+ Y
Sbjct: 299 FYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEK-IGFIFDAHVV-NGLIDSY 356

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KC  ++ A RVF                                ++    D+++ T+MI
Sbjct: 357 WKCSCLSDAIRVF--------------------------------EECSSGDIIAVTSMI 384

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +  SQ      A++LF +M   G+ PD   + ++L AC  L A + GK++H   I+   F
Sbjct: 385 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ-F 443

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             + F   A++  YAKCGSI+ A   F  +P+  + V  ++++I GLAQHG G+ ++ +F
Sbjct: 444 MSDAFAGNALVYTYAKCGSIEDAELAFSSLPE--RGVVSWSAMIGGLAQHGHGKRALELF 501

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M   G+ P+ +T  +VLCAC+H GLV+E K++F SM   +GI    EHY CM+DLL R
Sbjct: 502 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 561

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+LD+A  L+ SMP+ AN+ +W ALL A R+H++ ++G++A +KL  LEP+    +VLL
Sbjct: 562 AGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 621

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           +N  A +  W E  +VRKLM DS I+K P  S++E    +H F+   KSHP TKEI   L
Sbjct: 622 ANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKL 681

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
            ++   +  AGY+PN    + D+D  EKE ++S+HSE+LA+AF L+++     IR+ KNL
Sbjct: 682 DELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNL 741

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RIC DCH+AFK +S I  REI++RD  RFH F+ G CSC D+W
Sbjct: 742 RICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 173/353 (49%), Gaps = 41/353 (11%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  N F  P VL     +   + G Q+H   +  G   D+F+ NAL+  Y  FG++++A 
Sbjct: 6   VCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 62

Query: 165 KVF-EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
           +VF E    R+ VS+N L++ Y +  +   A+ +F +M  S IQP  F F  + +ACT  
Sbjct: 63  RVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 122

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
            +   G+Q HA+V + +G    ++    A+++MY K G +++A  +F  M  S    +W+
Sbjct: 123 RNIDAGRQVHAMVVR-MG-YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS-DVVSWN 179

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           ++ISG    G   R                               A+EL  +M+S G+ P
Sbjct: 180 ALISGCVLNGHDHR-------------------------------AIELLLQMKSSGLVP 208

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           +   + ++L+AC G GA D G+++H   I+      + ++   ++DMYAK   +D A+ V
Sbjct: 209 NVFMLSSILKACAGAGAFDLGRQIHGFMIKANA-DSDDYIGVGLVDMYAKNHFLDDAMKV 267

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           F  +    + + L+N++ISG +  G  + + ++F  +   GL  +  T   VL
Sbjct: 268 FDWMSH--RDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 318



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 39/303 (12%)

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           D ++G Q HA+        GS++ +  A++ MY   G M+ A RVF   G  ++  +W+ 
Sbjct: 22  DAQLGAQVHAMAMAT--GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 79

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           ++S Y +                              Q G    A+++FG+M   GI P 
Sbjct: 80  LMSAYVKN----------------------------DQCG---DAIQVFGEMVWSGIQPT 108

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           E     V+ AC G   +D G+++H   +  + + +++F   A++DMY K G +D A  +F
Sbjct: 109 EFGFSCVVNACTGSRNIDAGRQVHAMVVR-MGYEKDVFTANALVDMYVKMGRVDIASVIF 167

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            K+P +   V  +N++ISG   +G    +I +  +M+  GL P+     ++L AC+  G 
Sbjct: 168 EKMPDS--DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 225

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            + G+Q    M+        ++ G  +VD+ A++  LD+A  +   M +  + ++W AL+
Sbjct: 226 FDLGRQIHGFMIKANADSD-DYIGVGLVDMYAKNHFLDDAMKVFDWMSH-RDLILWNALI 283

Query: 524 AAC 526
           + C
Sbjct: 284 SGC 286


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/629 (38%), Positives = 355/629 (56%), Gaps = 58/629 (9%)

Query: 109 NFTFPFV--LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           N   P +  L  C  L++ K   Q+H  ++  GL F  +  + L++  S F     A  +
Sbjct: 3   NLNHPILQKLQKCHNLNTLK---QVHAQMLTTGLSFQTYYLSHLLNTSSKFAS-TYAFTI 58

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCP-ALWLFRK-MQDSCIQPDAFTFVAMFSACTELN 224
           F       L  YNTLI+      +    A  L+   +    +QP++FTF ++F AC    
Sbjct: 59  FNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHP 118

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
             + G   HA V K L     +  ++ +++N YAK                         
Sbjct: 119 WLQHGPPLHAHVLKFLQ-PPYDPFVQNSLLNFYAK------------------------- 152

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS-------------QALE 331
                   GK+  +R LFDQ+ + DL +W  M++ Y+Q                  +AL 
Sbjct: 153 -------YGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALH 205

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF  M+   I P+EVT+VA++ AC  LGAL  G   H   + N +   N F+ TA++DMY
Sbjct: 206 LFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNL-KLNRFVGTALVDMY 264

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           +KCG ++ A  +F ++    +    +N++I G A HG G  ++ ++R M+L  L PDG T
Sbjct: 265 SKCGCLNLACQLFDELSD--RDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGAT 322

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            V  + ACSHGGLVEEG + FESM   +G++P++EHYGC++DLL R GRL EA   +Q M
Sbjct: 323 IVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDM 382

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P   N+++WR+LL A +LH N ++GE A + L++LEP+   +YVLLSNM A   RW + +
Sbjct: 383 PMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVK 442

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VR LM D G+ K PG+S +E NG +H FL   K+HP +KEI   + ++  +L   G+ P
Sbjct: 443 RVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKP 502

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
            T +V+FDV+EE+KE  +SYHSE+LA+AF LI S S   IRI KNLR+CGDCH   KL+S
Sbjct: 503 RTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLIS 562

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             Y+R+I+VRD  RFH FK G+CSC+D+W
Sbjct: 563 AAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 180/359 (50%), Gaps = 43/359 (11%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHI--------SSSQLISFFALSGCKNGLFRSR 62
           +L  L+ C +L    Q+H Q++ +GL+           +SS+  S +A +          
Sbjct: 8   ILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFT---------- 57

Query: 63  ILFSQIDNPNIFIWNTLMRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            +F+ I NP +F++NTL+   +  SD    A  LY  +L+   + PN+FTFP +  +CA 
Sbjct: 58  -IFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACAS 116

Query: 122 LSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
               + G  +H H++KF    +D F++N+L++FY+ +G +  +  +F+     DL ++NT
Sbjct: 117 HPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNT 176

Query: 181 LINGYAQVKE-------------PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           ++  YAQ                   AL LF  MQ S I+P+  T VA+ SAC+ L    
Sbjct: 177 MLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALS 236

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G   H  V +N   +  N  + TA+++MY+KCG +N+A ++F  +   + T  +++MI 
Sbjct: 237 QGAWAHGYVLRN--NLKLNRFVGTALVDMYSKCGCLNLACQLFDELS-DRDTFCYNAMIG 293

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMIS----GYSQVGGFSQALELFGKMESLGIH 342
           G+   G   +A +L+  M   DLV   A I       S  G   + LE+F  M+  G+H
Sbjct: 294 GFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMK--GVH 350



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 38/277 (13%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS-------------DSP 89
           + L++F+A  G    L  SR LF QI  P++  WNT++  Y++S             D  
Sbjct: 144 NSLLNFYAKYG---KLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMS 200

Query: 90  QEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRN 148
            EAL L+  M LS+  + PN  T   ++++C+ L +   G   H ++++  L+ + F+  
Sbjct: 201 LEALHLFCDMQLSQ--IKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGT 258

Query: 149 ALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
           AL+  YS  G +N A ++F+    RD   YN +I G+A       AL L+R M+   + P
Sbjct: 259 ALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVP 318

Query: 209 DAFTFVAMFSACT---------ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           D  T V    AC+         E+ +   G        ++ GC          +I++  +
Sbjct: 319 DGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGC----------LIDLLGR 368

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            G +  AE     M M  +   W S++      G +E
Sbjct: 369 AGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLE 405


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/649 (36%), Positives = 378/649 (58%), Gaps = 53/649 (8%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F F+ +S  +    K    +H  ++  G    +FI   L++ Y+  G ++ +   F+   
Sbjct: 22  FNFLFDSSTKTPFAKC---LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 78

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGK 230
            +D+ ++N++I+ Y        A+  F ++   S I+PD +TF  +  AC  L D   G+
Sbjct: 79  QKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 135

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG-- 288
           + H   +K LG    N+ +  ++I+MY++ G   +A  +F  M   +   +W++MISG  
Sbjct: 136 KIHCWAFK-LG-FQWNVFVAASLIHMYSRFGFTGIARSLFDDMPF-RDMGSWNAMISGLI 192

Query: 289 -------------------------------------YTREGKIERARQLFDQMDQRDLV 311
                                                Y + G ++ A ++F+ +  +D++
Sbjct: 193 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVI 252

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           SW  +I+GY+Q G  S+A+E++  ME    I P++ T V++L A   +GAL  G ++H +
Sbjct: 253 SWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGR 312

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            I+  +   ++F+ T +ID+Y KCG +  A+S+FY++P+  ++   +N+IIS    HG  
Sbjct: 313 VIKTNLH-LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ--ESSVTWNAIISCHGIHGHA 369

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490
           E ++ +F EM   G+KPD VTFV++L ACSH G VEEGK  F  M  YGIKP ++HYGCM
Sbjct: 370 EKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCM 429

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G L+ AY  I+ MP   ++ IW ALL ACR+H N ++G+ A  +L +++  + 
Sbjct: 430 VDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNV 489

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
            +YVLLSN+ A   +WE   +VR L  + G++K PGWS IE N  +  F    +SHP+ K
Sbjct: 490 GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCK 549

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           EI   L+ +T K+KS GY+P+   V+ DV+E+EKE +++ HSE+LA+AFG+I++  K  I
Sbjct: 550 EIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPI 609

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           RI KNLR+CGDCH A K +S I +REI+VRD+ RFH FK G CSC D+W
Sbjct: 610 RIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 183/422 (43%), Gaps = 83/422 (19%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           +L++C +L    +IH      G   ++  ++ LI  ++  G   G+ RS  LF  +   +
Sbjct: 124 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGF-TGIARS--LFDDMPFRD 180

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  WN ++ G  ++ +  +AL +   M  +GI       F  V++               
Sbjct: 181 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGI----KMNFVTVVS--------------- 221

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
                        I    +  Y+  G +++AHKVFE    +D++S+NTLI GYAQ     
Sbjct: 222 -------------ILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLAS 268

Query: 193 PALWLFRKMQDSC--IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNMLL 249
            A+ ++ KM + C  I P+  T+V++  A   +   + G + H  V K NL     ++ +
Sbjct: 269 EAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHL---DVFV 324

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            T +I++Y KCG                                ++  A  LF Q+ Q  
Sbjct: 325 ATCLIDVYGKCG--------------------------------RLVDAMSLFYQVPQES 352

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK---R 366
            V+W A+IS +   G   + L+LFG+M   G+ PD VT V++L AC   G ++ GK   R
Sbjct: 353 SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 412

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           L Q+Y        ++     ++D+  + G ++ A      +P      S++ +++     
Sbjct: 413 LMQEY----GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQ-PDASIWGALLGACRI 467

Query: 427 HG 428
           HG
Sbjct: 468 HG 469



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 141/315 (44%), Gaps = 23/315 (7%)

Query: 23  QALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRS-RILFSQIDNPNIFIWNTLM 80
           QAL +  ++   G+  + ++   ++  F     K GL  S   +F  I   ++  WNTL+
Sbjct: 199 QALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLI 258

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
            GY+++    EA+ +Y  M     + PN  T+  +L + A + + + G +IH  +IK  L
Sbjct: 259 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 318

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
             D+F+   LI  Y   G + +A  +F        V++N +I+ +         L LF +
Sbjct: 319 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGE 378

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV--------YKNLGCVGSNMLLKTA 252
           M D  ++PD  TFV++ SAC+       GK    ++         K+ GC          
Sbjct: 379 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGC---------- 428

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM---DQRD 309
           ++++  + G + MA      M +    + W +++      G IE  +   D++   D ++
Sbjct: 429 MVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKN 488

Query: 310 LVSWTAMISGYSQVG 324
           +  +  + + Y+ VG
Sbjct: 489 VGYYVLLSNIYANVG 503


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/539 (40%), Positives = 338/539 (62%), Gaps = 38/539 (7%)

Query: 214 VAMFSACTELNDPRIGK-QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE----- 267
            A+ ++   + D  +G    HA   K+ G   +++ ++TA++  YAK G  ++A      
Sbjct: 42  AALSASVPAMRDLGLGAASLHARALKS-GFAAADLFVRTALVEAYAKAGRADLARAAFDE 100

Query: 268 --------------------------RVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
                                     RVF  M   +   +W++MI GY   G+++ AR++
Sbjct: 101 APRRDVFLCNVMLAAYVTRGEVAEARRVFDGM-RERDMVSWNTMIHGYAVNGEVDLAREV 159

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F+ MD RD  SW++M+S Y++      ALEL+ +M +  ++PD  TMV+VL AC  +GAL
Sbjct: 160 FNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGAL 219

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             G  +HQ ++E+     ++ L TA+IDMYAKCG I+ ++ VF+ +P  +K V  ++S+I
Sbjct: 220 AVGAEVHQ-FVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMP--VKDVLTWSSMI 276

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
            GLA HG G  ++++F  M   GL+P+ VTF+ VL +C+H GLV +GK++F SM + +G+
Sbjct: 277 IGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGV 336

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P+++HYGCMVDLL R G ++EA  LI+ MP++ ++VIWRALL ACR+++N ++ E A  
Sbjct: 337 TPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMA 396

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           KL  L+P    HYVLLSN+ A+   WE   ++R+ +    IQ+ PG S IE   T+H F+
Sbjct: 397 KLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFI 456

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           +  +SHP++KEI  ML +M  +L+ AGY P T  V+ D+DE+ KE  ++ HSEKLA+AFG
Sbjct: 457 SGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFG 516

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+ + +  T+RITKNLR C DCH A KL++ +Y R++++RD  RFH F +G CSC D+W
Sbjct: 517 LLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 142/310 (45%), Gaps = 46/310 (14%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + +I  +A++G    +  +R +F+ +D+ + F W+++M  Y++    ++AL L+  M
Sbjct: 138 VSWNTMIHGYAVNG---EVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREM 194

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
            +   V+P+  T   VL++C+ + +   G ++H  +   G+E D+ +  ALI  Y+  G 
Sbjct: 195 RA-ACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGD 253

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I N+ +VF     +D+++++++I G A       AL LF +M    +QP+  TF+ +  +
Sbjct: 254 IENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLIS 313

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM----GM 275
           CT L                                     GL++  ++ FS+M    G+
Sbjct: 314 CTHL-------------------------------------GLVSDGKKYFSSMSVVHGV 336

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLVSWTAMISGYSQVGGFSQALELFG 334
           +     +  M+    R G IE A+QL   M  + D V W A++           A E   
Sbjct: 337 TPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMA 396

Query: 335 KMESLGIHPD 344
           K+  L  H D
Sbjct: 397 KLRVLDPHAD 406


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/596 (40%), Positives = 367/596 (61%), Gaps = 16/596 (2%)

Query: 130 QIHCHIIKFGLEFD--LFIRNALIH-FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           QIH  I++  L       + N  +H  Y+  G I ++  +F  ++  DL  +   IN  +
Sbjct: 45  QIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 104

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  A  L+ ++  S I P+ FTF ++  +C+     + GK  H  V K  G +G +
Sbjct: 105 INGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCST----KSGKLIHTHVLK-FG-LGLD 158

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             + T ++++YAK G +  A++VF  M   +S  + ++MI+ Y ++G +E AR LFD+M 
Sbjct: 159 PYVATGLVDIYAKGGDVVSAQKVFDRMP-ERSLVSSTAMITCYAKQGNVEAARALFDRMC 217

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGK 365
           +RD+VSW  MI GYSQ G  S AL LF K+ + G   PDE+T+VA L AC  +GAL+ G+
Sbjct: 218 ERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGR 277

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H  ++ +     N+ + TA+IDMY+KCGS++ A+ VF   P+  K +  +N++I+G A
Sbjct: 278 WIHV-FVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPR--KDIVAWNAMITGYA 334

Query: 426 QHGLGETSIAVFREME-LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
            HG  + ++ +F EM+ + GL+P  +TF+  L AC+H GLV EG Q FESM   YGIKP+
Sbjct: 335 MHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPK 394

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EHYGC+V LL R G+L  AY +I++M  +A+SV+W ++L +C+LH    +G+   + L+
Sbjct: 395 IEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLI 454

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
                +   YVLLSN+ A    +E   +VR LM + GI K PG S IE +  +H F A  
Sbjct: 455 GQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGD 514

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           + H ++KEI  ML+ M+ ++KS GYVPNT  V+ D++E EKE  +  HSE+LA+A+GLI+
Sbjct: 515 REHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLIS 574

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++    ++I KNLR+C DCH   KL+S+I  R+I++RD  RFH F  G+CSC DFW
Sbjct: 575 TKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 209/455 (45%), Gaps = 80/455 (17%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFSQID 69
           L   +++  S+ + LQIH  I+   L  H     L      +   +G  R S  LF Q  
Sbjct: 30  LAVFIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTI 89

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +P++F++   +   S +    +A +LY  +LS  I +PN FTF  +L SC    S KSG 
Sbjct: 90  DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQI-NPNEFTFSSILKSC----STKSGK 144

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF----EGSLA------------- 172
            IH H++KFGL  D ++   L+  Y+  G + +A KVF    E SL              
Sbjct: 145 LIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG 204

Query: 173 --------------RDLVSYNTLINGYAQVKEPCPALWLFRK-MQDSCIQPDAFTFVAMF 217
                         RD+VS+N +I+GY+Q   P  AL LF+K + D   +PD  T VA  
Sbjct: 205 NVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAAL 264

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC+++     G+  H  V+ N   +  N+ + TA+I+MY+KCG +  A  VF+     K
Sbjct: 265 SACSQIGALETGRWIH--VFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTP-RK 321

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
              AW++MI+GY                           + GYSQ      AL LF +M+
Sbjct: 322 DIVAWNAMITGYA--------------------------MHGYSQ-----DALRLFDEMQ 350

Query: 338 SL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
            + G+ P ++T +  L+AC   G ++ G ++ +   +       I     ++ +  + G 
Sbjct: 351 GITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 410

Query: 397 IDTALSVFYKIPKNLKTVS---LFNSIISGLAQHG 428
           +  A    Y+I KN+   +   L++S++     HG
Sbjct: 411 LKRA----YEIIKNMNMEADSVLWSSVLGSCKLHG 441



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +SS+ +I+ +A  G    +  +R LF ++   +I  WN ++ GYS+   P +AL+L+  +
Sbjct: 191 VSSTAMITCYAKQG---NVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKL 247

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           L+ G   P+  T    L++C+++ + ++G  IH  +    +  ++ +  ALI  YS  G 
Sbjct: 248 LADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGS 307

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPDAFTFVAMFS 218
           +  A  VF  +  +D+V++N +I GYA       AL LF +MQ  + +QP   TF+    
Sbjct: 308 LEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQ 367

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC        G Q    + +  G +   +     ++++  + G +  A  +   M M   
Sbjct: 368 ACAHAGLVNEGIQIFESMGQEYG-IKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEAD 426

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVGGFSQALELFGK 335
           +  WSS++      G+    +++ + +  +++ +   +  + + Y+ VG +    ++   
Sbjct: 427 SVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNL 486

Query: 336 MESLGI 341
           M+  GI
Sbjct: 487 MKEKGI 492


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/661 (36%), Positives = 365/661 (55%), Gaps = 58/661 (8%)

Query: 106 SPNNFTFPF--VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           SP    F    VL++   + + ++   +H  II   L  +  +   L+  Y+    + +A
Sbjct: 37  SPQETVFLLGQVLDTYPDIRTLRT---VHSRIILEDLRCNSSLGVKLMRAYASLKDVASA 93

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            KVF+    R+++  N +I  Y         + +F  M    ++PD +TF  +  AC+  
Sbjct: 94  RKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
               IG++ H    K +G + S + +   +++MY KCG ++ A  V   M   +   +W+
Sbjct: 154 GTIVIGRKIHGSATK-VG-LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWN 210

Query: 284 SMISGYTREGKIERA-------------------------------------RQLFDQMD 306
           S++ GY +  + + A                                     + +F +M 
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 270

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++ LVSW  MI  Y +     +A+EL+ +ME+ G  PD V++ +VL AC    AL  GK+
Sbjct: 271 KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT--VSLFNSIISGL 424
           +H  YIE      N+ L  A+IDMYAKCG ++ A  VF    +N+K+  V  + ++IS  
Sbjct: 331 IHG-YIERKKLIPNLLLENALIDMYAKCGCLEKARDVF----ENMKSRDVVSWTAMISAY 385

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
              G G  ++A+F +++  GL PD + FVT L ACSH GL+EEG+  F+ M + Y I P+
Sbjct: 386 GFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 445

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EH  CMVDLL R G++ EAY  IQ M  + N  +W ALL ACR+H +  IG +A  KL 
Sbjct: 446 LEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLF 505

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            L P+   +YVLLSN+ A+  RWEE   +R +M   G++K PG S +E N  +H FL   
Sbjct: 506 QLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGD 565

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +SHPQ+ EI   L  +  K+K  GYVP++   + DV+EE+KET ++ HSEKLA+ F L+N
Sbjct: 566 RSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMN 625

Query: 664 SRSKE-----TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           ++ +E     TIRITKNLRICGDCH+A KL+S+I  REI++RD  RFH+F+ G CSC D+
Sbjct: 626 TKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDY 685

Query: 719 W 719
           W
Sbjct: 686 W 686



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 188/422 (44%), Gaps = 39/422 (9%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           +L++   ++    +H +I+   L    +SS  +           +  +R +F +I   N+
Sbjct: 48  VLDTYPDIRTLRTVHSRIILEDL--RCNSSLGVKLMRAYASLKDVASARKVFDEIPERNV 105

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            I N ++R Y  +    E + ++ +M     V P+++TFP VL +C+   +   G +IH 
Sbjct: 106 IIINVMIRSYVNNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVIGRKIHG 164

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
              K GL   LF+ N L+  Y   G+++ A  V +    RD+VS+N+L+ GYAQ +    
Sbjct: 165 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP----------RIGKQFHAVVYKNLGCV 243
           AL + R+M+   I  DA T  ++  A +               ++GK+        +G  
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284

Query: 244 GSNMLLKTAVINMYAKC---GLMNMAERVFSTMGMSKSTAAWS----------------- 283
             N +   AV  +Y++    G    A  + S +     T+A S                 
Sbjct: 285 MKNAMPVEAV-ELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN 343

Query: 284 -----SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
                ++I  Y + G +E+AR +F+ M  RD+VSWTAMIS Y   G    A+ LF K++ 
Sbjct: 344 LLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD 403

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+ PD +  V  L AC   G L+ G+   +   ++      +     ++D+  + G + 
Sbjct: 404 SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 463

Query: 399 TA 400
            A
Sbjct: 464 EA 465



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 138/289 (47%), Gaps = 10/289 (3%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFR 60
           +R V+  +SL+      +    AL++  ++    ++H   + + L+   + +  +N ++ 
Sbjct: 203 RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYV 262

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
             + F ++   ++  WN ++  Y ++  P EA+ LY+ M + G   P+  +   VL +C 
Sbjct: 263 KDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF-EPDAVSITSVLPACG 320

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
             S+   G +IH +I +  L  +L + NALI  Y+  G +  A  VFE   +RD+VS+  
Sbjct: 321 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTA 380

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVY 237
           +I+ Y      C A+ LF K+QDS + PD+  FV   +AC+    L + R   +     Y
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY 440

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           K    +   +     ++++  + G +  A R    M M  +   W +++
Sbjct: 441 K----ITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL 485


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/717 (35%), Positives = 393/717 (54%), Gaps = 50/717 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFAL--SGCKNG-LFRSRILF 65
           ++LL+  +   +LK+ LQIH  I+  G      S+ LI F +L  S CK   L  +  LF
Sbjct: 147 ATLLSGFDDTTTLKEVLQIHSHIIRFGF-----SASLIVFNSLVDSYCKTCCLDIASQLF 201

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           S++   +   +N ++ GY++    +EAL L+  M +     P+ FTF  +L         
Sbjct: 202 SEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDF-QPSGFTFAAMLGMSVGSEDV 260

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G QIH   IK    +D+F+ NAL+ FYS   YI+ A  +F+     D VSYN +I GY
Sbjct: 261 IFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGY 320

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS-ACTELNDPRIGKQFHAVVYKNLGCVG 244
           A   +   +  LF+++Q +      F F  M S A  ELN   +G+Q HA     +    
Sbjct: 321 AWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELN-LSMGRQTHAQAV--VTTAV 377

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S + +  A+++MYAKC                                 K E A ++F  
Sbjct: 378 SEVQVGNALVDMYAKCE--------------------------------KFEDANRIFAN 405

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +  R+ V WTA+IS Y Q G   +AL++F +M    +H D+ T  + L+A   L ++  G
Sbjct: 406 LAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLG 465

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K+LH   I   +   ++F  + ++DMYA CGS+  A+ VF ++P   + +  +N++IS  
Sbjct: 466 KQLHSSVIRLGLLS-SVFSGSVLVDMYANCGSMKDAIEVFKEMPD--RNIVCWNALISAY 522

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           +Q+G  E + + F +M   GL PD V+F++VL ACSH GLVE+   +F SM   Y + P+
Sbjct: 523 SQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPR 582

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +HY  M+D+L R GR +EA  LI  MP++ + V+W ++L +CR+H+N  + + A  +L 
Sbjct: 583 RKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLF 642

Query: 544 DLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            ++     A YV +SN+ AE  +WE A +V+K M + G++K   +S++E +  +H F A+
Sbjct: 643 KMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTAN 702

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            ++HPQT++I   +  +   +   GY P+T   + +VDEE K   + YHSE+LA+AF LI
Sbjct: 703 DRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALI 762

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           N+     I I KNLR C DCH A K++S+I  REI VRD+ RFH F+ G+CSC D+W
Sbjct: 763 NTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 218/469 (46%), Gaps = 39/469 (8%)

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            LFR+R LF  + + N   W  ++ GYS+++ P+EA  LYT M   G V P++ TF  +L
Sbjct: 92  NLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSG-VKPDHITFATLL 150

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +     ++ K   QIH HII+FG    L + N+L+  Y     ++ A ++F     +D V
Sbjct: 151 SGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSV 210

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N +I GY +      AL LF +M++   QP  FTF AM        D   G+Q H + 
Sbjct: 211 SFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLA 270

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K            + V +++    L++                        Y++   I+
Sbjct: 271 IKT-----------SYVWDIFVANALLDF-----------------------YSKHDYID 296

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            A+ LFD+M + D VS+  +I+GY+  G + ++ +LF +++             +L    
Sbjct: 297 LAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAA 356

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
               L  G++ H Q +        + +  A++DMYAKC   + A  +F  +    +    
Sbjct: 357 IELNLSMGRQTHAQAVVTTAVSE-VQVGNALVDMYAKCEKFEDANRIFANLA--YRNSVP 413

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           + +IIS   Q G  E ++ +F+EM    +  D  TF + L A ++   V  GKQ   S++
Sbjct: 414 WTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVI 473

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             G+   +     +VD+ A  G + +A  + + MP D N V W AL++A
Sbjct: 474 RLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISA 521



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 181/374 (48%), Gaps = 43/374 (11%)

Query: 156 IFGYINN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           + GY+ +     A ++FE   +R+ VS+  +I GY+Q  +P  A  L+ +M  S ++PD 
Sbjct: 84  VSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDH 143

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            TF  + S   +    +   Q H+ + +  G   S +++  ++++ Y K   +++A ++F
Sbjct: 144 ITFATLLSGFDDTTTLKEVLQIHSHIIR-FGFSAS-LIVFNSLVDSYCKTCCLDIASQLF 201

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
           S M  +K + +++ MI+GYT+ G  E A                               L
Sbjct: 202 SEMP-TKDSVSFNVMITGYTKYGFREEA-------------------------------L 229

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
           +LF +M ++   P   T  A+L   VG   + FG+++H   I+   +  +IF+  A++D 
Sbjct: 230 KLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIK-TSYVWDIFVANALLDF 288

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           Y+K   ID A ++F ++P+ L  VS +N II+G A +G  E S  +F+ ++         
Sbjct: 289 YSKHDYIDLAKNLFDEMPE-LDGVS-YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNF 346

Query: 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            F T+L   +    +  G+Q     +      +++    +VD+ A+  + ++A  +  ++
Sbjct: 347 PFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANL 406

Query: 511 PYDANSVIWRALLA 524
            Y  NSV W A+++
Sbjct: 407 AY-RNSVPWTAIIS 419



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A ++F  M   ++T++ + M+SGY +   + RAR+LF+ M  R+ VSWT MI GYSQ   
Sbjct: 65  ARQLFDEMPY-RNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQ 123

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +A  L+ +M   G+ PD +T   +L        L    ++H   I    F  ++ +  
Sbjct: 124 PKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIR-FGFSASLIVFN 182

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           +++D Y K   +D A  +F ++P   K    FN +I+G  ++G  E ++ +F +M  M  
Sbjct: 183 SLVDSYCKTCCLDIASQLFSEMPT--KDSVSFNVMITGYTKYGFREEALKLFMQMRNMDF 240

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           +P G TF  +L        V  G+Q     +       +     ++D  ++   +D A  
Sbjct: 241 QPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKN 300

Query: 506 LIQSMP 511
           L   MP
Sbjct: 301 LFDEMP 306


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 266/773 (34%), Positives = 418/773 (54%), Gaps = 113/773 (14%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           LL+ C+  K+   IH  I+ +  N  I   + L+S +A     + +  +R +F Q+   N
Sbjct: 21  LLKHCRDTKK---IHCHIIKAFRNPEIFLLNNLVSAYAKF---DRITYARRVFDQMPQRN 74

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN----------------------F 110
           ++ WNTL+  YS+     E   ++ +M ++ +VS N+                      +
Sbjct: 75  LYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLY 134

Query: 111 TFPFVLNSCARLSSF-----KSGC-----QIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
             PF LN  A LS+      K GC     Q+H H++KFG +  +F+ + L+  YS  G +
Sbjct: 135 NGPFNLNRIA-LSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193

Query: 161 NNAHKVFEGSLARDLVSYNTLING-------------YAQVKEPCPALW----------- 196
             A + F+    +++V YNTLI G             +  ++E     W           
Sbjct: 194 FCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNG 253

Query: 197 -------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
                  LFR+M+   ++ D +TF ++ +AC  +   + GKQ HA + +       N+ +
Sbjct: 254 LDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD--YQDNIFV 311

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            +A+++MY KC  +  AE V                                F +M+ ++
Sbjct: 312 GSALVDMYCKCKSIKSAETV--------------------------------FRKMNCKN 339

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           +VSWTAM+ GY Q G   +A+++F  M++ GI PD+ T+ +V+ +C  L +L+ G + H 
Sbjct: 340 VVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFH- 398

Query: 370 QYIENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
                +V G   F+T   A++ +Y KCGSI+ +  +F ++   +  VS + +++SG AQ 
Sbjct: 399 --CRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSY-VDEVS-WTALVSGYAQF 454

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G    ++ +F  M   G KPD VTF+ VL ACS  GLV++G Q FESM+  + I P  +H
Sbjct: 455 GKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDH 514

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CM+DL +R GRL+EA   I  MP+  +++ W +LL++CR HRN +IG+ A + LL LE
Sbjct: 515 YTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLE 574

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P + A Y+LLS++ A   +WEE   +RK M D G++K PG S+I++   +H F A  +S+
Sbjct: 575 PHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSN 634

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P + +I   L+ +  K+   GYVP+   V+ DVD+ EK  ++++HSEKLA+AFGLI    
Sbjct: 635 PFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPP 694

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+ KNLR+CGDCH A K +S+I +REI+VRDA RFHLFK G CSC DFW
Sbjct: 695 GLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 225/441 (51%), Gaps = 43/441 (9%)

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           C  L   +   +IHCHIIK     ++F+ N L+  Y+ F  I  A +VF+    R+L S+
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT----------------- 221
           NTL++ Y+++        +F  M       D  ++ ++ SA                   
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTR----DMVSWNSLISAYAGRGFLLQSVKAYNLMLY 134

Query: 222 --ELNDPRIGKQFHAVVYKNLGCV---------------GSNMLLKTAVINMYAKCGLMN 264
               N  RI      ++    GCV                S + + + +++MY+K GL+ 
Sbjct: 135 NGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF 194

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A + F  M   K+   ++++I+G  R  +IE +RQLF  M ++D +SWTAMI+G++Q G
Sbjct: 195 CARQAFDEMP-EKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNG 253

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +A++LF +M    +  D+ T  +VL AC G+ AL  GK++H  YI    +  NIF+ 
Sbjct: 254 LDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVH-AYIIRTDYQDNIFVG 312

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           +A++DMY KC SI +A +VF K+  N K V  + +++ G  Q+G  E ++ +F +M+  G
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKM--NCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG 370

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           ++PD  T  +V+ +C++   +EEG QF    L  G+   +     +V L  + G +++++
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 505 GLIQSMPYDANSVIWRALLAA 525
            L   M Y  + V W AL++ 
Sbjct: 431 RLFSEMSY-VDEVSWTALVSG 450



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 125/545 (22%), Positives = 229/545 (42%), Gaps = 115/545 (21%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           + R+ L    +LA  + C  L   LQ+HG +V  G   ++   S L+  ++ +G    +F
Sbjct: 140 LNRIALSTMLILASKQGCVHL--GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGL---VF 194

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS------------- 106
            +R  F ++   N+ ++NTL+ G  R    +++  L+  M  K  +S             
Sbjct: 195 CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 107 -----------------PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
                             + +TF  VL +C  + + + G Q+H +II+   + ++F+ +A
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSA 314

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           L+  Y     I +A  VF     +++VS+  ++ GY Q      A+ +F  MQ++ I+PD
Sbjct: 315 LVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPD 374

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            FT  ++ S+C  L     G QFH      +  + S + +  A++ +Y KCG +  + R+
Sbjct: 375 DFTLGSVISSCANLASLEEGAQFHCRAL--VSGLISFITVSNALVTLYGKCGSIEDSHRL 432

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           FS M       +W++++SGY                               +Q G  ++ 
Sbjct: 433 FSEMSYVDEV-SWTALVSGY-------------------------------AQFGKANET 460

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT---TA 386
           L LF  M + G  PD+VT + VL AC   G +  G ++ +  I+     R I +    T 
Sbjct: 461 LRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKE---HRIIPIEDHYTC 517

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +ID++++ G ++ A     K+P                                      
Sbjct: 518 MIDLFSRAGRLEEARKFINKMP------------------------------------FS 541

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYG 505
           PD + + ++L +C     +E GK   ES+L   ++P     Y  +  + A  G+ +E   
Sbjct: 542 PDAIGWASLLSSCRFHRNMEIGKWAAESLLK--LEPHNTASYILLSSIYAAKGKWEEVAN 599

Query: 506 LIQSM 510
           L + M
Sbjct: 600 LRKGM 604



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 172/351 (49%), Gaps = 12/351 (3%)

Query: 1   MKRLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKN 56
           ++ L ++  +  ++L +C    +L++  Q+H  I+ +    +I   S L+  +    CK+
Sbjct: 267 LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYC--KCKS 324

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            +  +  +F +++  N+  W  ++ GY ++   +EA+ ++  M + GI  P++FT   V+
Sbjct: 325 -IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGI-EPDDFTLGSVI 382

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +SCA L+S + G Q HC  +  GL   + + NAL+  Y   G I ++H++F      D V
Sbjct: 383 SSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEV 442

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+  L++GYAQ  +    L LF  M     +PD  TF+ + SAC+     + G Q    +
Sbjct: 443 SWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESM 502

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG--YTREGK 294
            K    +       T +I+++++ G +  A +  + M  S     W+S++S   + R  +
Sbjct: 503 IKEHRIIPIEDHY-TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNME 561

Query: 295 IER-ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           I + A +   +++  +  S+  + S Y+  G + +   L   M   G+  +
Sbjct: 562 IGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKE 612


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/766 (33%), Positives = 409/766 (53%), Gaps = 84/766 (10%)

Query: 26  QIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           Q+H Q + SG    +S  +S +  +      ++G    R +F ++   N+  W +L+ GY
Sbjct: 125 QVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDG----RGIFDEMGIKNVVSWTSLLSGY 180

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           +R+    E + L   M  +G V+PN FTF  VL + A  S  + G Q+H  I+K G EF 
Sbjct: 181 ARNGLNDEVIHLINQMQMEG-VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFT 239

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
            F+ NALI  Y     + +A  VF+  + RD V++N +I GYA +        +F +M+ 
Sbjct: 240 TFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRL 299

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
           + ++     F      C++  +    KQ H  V KN      +  ++TA++  Y+KC  +
Sbjct: 300 AGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQD--IRTALMVTYSKCSSV 357

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR--------------- 308
           + A ++FS    + +   W++MI G+ +    ++A  LF QM +                
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG 417

Query: 309 ---DLVSW-----------------TAMISGYSQVG------------------------ 324
               L+S                  TA++  Y + G                        
Sbjct: 418 KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML 477

Query: 325 -GFSQALELFGKMESL------GIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVV 376
            G +Q  +    ME        G+ P+E T  +V+ AC    A ++ GK++H   +++  
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS-- 535

Query: 377 FGRN--IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
            G++  + +++A++ MY+K G+I++A  VF +  +  + +  +NS+I+G  QHG  + ++
Sbjct: 536 -GKSNALCVSSALLTMYSKKGNIESAEKVFTR--QEERDIVSWNSMITGYGQHGDAKKAL 592

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDL 493
            VF+ M+  GL  D VTF+ VL AC+H GLVEEG+++F  M+ +Y I  + EHY CMVDL
Sbjct: 593 EVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDL 652

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
            +R G  D+A  +I  MP+ A+  IWR LLAACR+HRN ++G++A +KL+ L+P+    Y
Sbjct: 653 YSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGY 712

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLLSN+ A    WEE   VRKLMD+  ++K  G S+IE    +  FLA   SHP +  + 
Sbjct: 713 VLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVY 772

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
             L+++++KLK  GY P+T  V  DV+EE KE ++S HSE+LA+A+GLI       I+I 
Sbjct: 773 AKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIE 832

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLRICGDCH   +L+S I  R ++VRD+ RFH FK G CSC  +W
Sbjct: 833 KNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/542 (23%), Positives = 227/542 (41%), Gaps = 84/542 (15%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF +    +I  +N L+  +SR++  +EAL L+  + S G+   +  T    L  C  L 
Sbjct: 60  LFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGL-GVDGLTLSCALKVCGVLF 118

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G Q+HC  +K G   D+ +  +L+  Y       +   +F+    +++VS+ +L++
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYA+       + L  +MQ   + P+ FTF  +  A  + +    G Q HA++ KN    
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN--GF 236

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                +  A+I MY K  ++  AE VF +M + + +  W+ MI GY   G      Q+F 
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSM-VVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 304 QM--------------------DQRDLVSW-------------------TAMISGYSQVG 324
           +M                     QR+L                      TA++  YS+  
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCS 355

Query: 325 GFSQALELFG--------------------------------KMESLGIHPDEVTMVAVL 352
              +A +LF                                 +M   G+ P+  T   VL
Sbjct: 356 SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVL 415

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
                        +LH Q I+   + +   + TA++D Y K G++  +  VFY IP   K
Sbjct: 416 AG----KPSSLLSQLHAQIIK-AYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA--K 468

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQF 471
            +  ++++++GLAQ    E ++ VF ++   G+KP+  TF +V+ AC S    VE GKQ 
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             + +  G    +     ++ + ++ G ++ A  +      + + V W +++     H +
Sbjct: 529 HATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHGD 587

Query: 532 AK 533
           AK
Sbjct: 588 AK 589



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 175/419 (41%), Gaps = 37/419 (8%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            L + A+++      Q   H IK  L    F+ +  + F S+      AH++F+ +  +D
Sbjct: 9   TLQNKAKITVGNGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKD 68

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +  YN L+  +++      AL LF+ +  S +  D  T       C  L D  +G+Q H 
Sbjct: 69  ISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHC 128

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
              K+ G +  ++ + T++++MY K         +F  MG+ K+  +W+S++SGY R G 
Sbjct: 129 QSLKS-GFL-EDVSVGTSLVDMYMKTEDFEDGRGIFDEMGI-KNVVSWTSLLSGYARNGL 185

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            +    L +QM                             +ME  G++P+  T   VL A
Sbjct: 186 NDEVIHLINQM-----------------------------QME--GVNPNGFTFATVLGA 214

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
                 ++ G ++H   ++N  F    F+  A+I MY K   +  A +VF  +   ++  
Sbjct: 215 LADESIIEGGVQVHAMIVKN-GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV--VRDS 271

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +N +I G A  G       +F  M L G+K     F T L  CS    +   KQ    
Sbjct: 272 VTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCG 331

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           ++  G +   +    ++   ++   +DEA+ L        N V W A++     + N K
Sbjct: 332 VVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNK 390


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/620 (36%), Positives = 362/620 (58%), Gaps = 46/620 (7%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGYIN 161
           + P + +   ++  C  L   K   QI  + IK   + +  +   LI+F +       ++
Sbjct: 31  LEPPSSSILSLIPKCTSLRELK---QIQAYTIKTH-QNNPTVLTKLINFCTSNPTIASMD 86

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +AH++F+     D+V +NT+  GYA+  +P  A+ L  ++  S + PD +TF ++  AC 
Sbjct: 87  HAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACA 146

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L     GKQ H +  K LG VG NM +   +INMY  C                     
Sbjct: 147 RLKALEEGKQLHCLAVK-LG-VGDNMYVCPTLINMYTACN-------------------- 184

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
                        ++ AR++FD++ +  +V++ A+I+  ++    ++AL LF +++  G+
Sbjct: 185 ------------DVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGL 232

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P +VTM+  L +C  LGALD G+ +H+ Y++   F + + + TA+IDMYAKCGS+D A+
Sbjct: 233 KPTDVTMLVALSSCALLGALDLGRWIHE-YVKKNGFDQYVKVNTALIDMYAKCGSLDDAV 291

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
           SVF  +P+  +    ++++I   A HG G  +I++ REM+   ++PD +TF+ +L ACSH
Sbjct: 292 SVFKDMPR--RDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSH 349

Query: 462 GGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            GLVEEG ++F SM + YGI P ++HYGCM+DLL R GRL+EA   I  +P     ++WR
Sbjct: 350 TGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWR 409

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            LL++C  H N ++ ++  Q++ +L+  HG  YV+LSN+ A   RW++   +RK+M D G
Sbjct: 410 TLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKG 469

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF-DV 639
             K PG S IE N  +H F +    H  +  +   L ++  +LK AGYVP+T  V + D+
Sbjct: 470 ALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADI 529

Query: 640 DEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMV 699
           ++EEKE V+ YHSEKLA+ +GL+N+    TIR+ KNLR+C DCH A K +S I+ R+I++
Sbjct: 530 EDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIIL 589

Query: 700 RDAIRFHLFKKGNCSCMDFW 719
           RD  RFH FK G CSC D+W
Sbjct: 590 RDVQRFHHFKDGKCSCGDYW 609



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 231/474 (48%), Gaps = 43/474 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SS+L+L+  C SL++  QI    + +  N+    ++LI+F   +     +  +  +F +I
Sbjct: 36  SSILSLIPKCTSLRELKQIQAYTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKI 95

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P+I ++NT+ RGY+R D P  A++L + +L  G++ P+++TF  +L +CARL + + G
Sbjct: 96  PQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLL-PDDYTFSSLLKACARLKALEEG 154

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+HC  +K G+  ++++   LI+ Y+    ++ A +VF+      +V+YN +I   A+ 
Sbjct: 155 KQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARN 214

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  AL LFR++Q+S ++P   T +   S+C  L    +G+  H  V KN    G +  
Sbjct: 215 SRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN----GFDQY 270

Query: 249 LK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +K  TA+I+MYAKCG ++ A  VF  M   + T AWS+MI  Y   G             
Sbjct: 271 VKVNTALIDMYAKCGSLDDAVSVFKDMP-RRDTQAWSAMIVAYATHGH------------ 317

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                               SQA+ +  +M+   + PDE+T + +L AC   G ++ G  
Sbjct: 318 -------------------GSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYE 358

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
                        +I     +ID+  + G ++ A     ++P    T  L+ +++S  + 
Sbjct: 359 YFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIK-PTPILWRTLLSSCSS 417

Query: 427 HGLGETS-IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           HG  E + + + R  EL      G  +V +   C+  G  ++     + M++ G
Sbjct: 418 HGNVEMAKLVIQRIFELD--DSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKG 469


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/599 (40%), Positives = 357/599 (59%), Gaps = 20/599 (3%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN-----AHKVFEGSLARDLVSYNTLING 184
           QIH  ++  GL   L  R  L  F +     N      ++++ +      L + N++I  
Sbjct: 27  QIHTQLVINGL---LNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRA 83

Query: 185 YAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           Y++   P  +   + K+   +  + PD +TF  +   C + +    G   H  + K+   
Sbjct: 84  YSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAVHGALIKH--G 140

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              +  +++ +I MYA+   ++   RVF ++         ++M+S   + G I  AR LF
Sbjct: 141 FEYDPHVESGLIFMYAEMSCLSSCHRVFESV-QKPDLVCQTTMVSACAKCGDIGFARNLF 199

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D M QRD VSW AMI+GY+Q G   +AL LF  M+  G+  +EV+M++V+ AC  LGALD
Sbjct: 200 DSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALD 259

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK  H  YIE       + L TA++DMY KCG++D AL VF+++  N K V  +++ I 
Sbjct: 260 QGKWAHA-YIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEM--NEKNVYTWSTAIG 316

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
           GLA +G G+  + +F  M+  G+ P+ +TF++VL  CS  G V+EG+  F+SM  ++GI+
Sbjct: 317 GLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIE 376

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P++EHYGCMVDL  R GRL+EA   I +MP   ++  W ALL ACR+++N ++GE A +K
Sbjct: 377 PRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRK 436

Query: 542 LLDLE-PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           L+++E  +HGA YV LSN+ A+T  W+    VR+ M   GI K PG S +E NG +H F 
Sbjct: 437 LIEVEGKNHGA-YVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFF 495

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           +  KSHP    IE M  +++ +LK AGYV +T  V+FD++EEEKE  +  HSEK+A+AFG
Sbjct: 496 SGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFG 555

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L + +    IRI KNLRIC DCH   K++S+I+ REI+VRD  RFH FK G CSC DFW
Sbjct: 556 LFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 218/439 (49%), Gaps = 70/439 (15%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           R + +H ++ AL++S  +LK+  QIH Q+V +GL N+     Q ++  A+    N L+ +
Sbjct: 5   RNIAKHPTI-ALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSN 63

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVLNSCA 120
           +IL  Q   P +F  N+++R YS+S +P ++   Y  +L S  ++SP+N+TF F++ +CA
Sbjct: 64  QIL-DQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCA 122

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE------------ 168
           + S+ ++G  +H  +IK G E+D  + + LI  Y+    +++ H+VFE            
Sbjct: 123 Q-SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTT 181

Query: 169 --------GSLA-----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
                   G +            RD VS+N +I GYAQ  +   AL LF+ MQ   ++ +
Sbjct: 182 MVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVN 241

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             + +++ +ACT L     GK  HA + KN   +   + L TA+++MY KCG ++ A +V
Sbjct: 242 EVSMISVVTACTHLGALDQGKWAHAYIEKNK--IQMTVNLGTALVDMYFKCGNVDRALKV 299

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  M   K+   WS+ I G                            ++GY Q     + 
Sbjct: 300 FWEMN-EKNVYTWSTAIGGLA--------------------------MNGYGQ-----KC 327

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           LELF  M+  GI P+E+T ++VL+ C  +G +D G+        +      +     ++D
Sbjct: 328 LELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVD 387

Query: 390 MYAKCGSIDTALSVFYKIP 408
           +Y + G ++ AL+    +P
Sbjct: 388 LYGRAGRLEEALNFINTMP 406



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   +   WN ++ GY++    +EAL L+  M   G V  N  +   V+ +C 
Sbjct: 195 ARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDG-VKVNEVSMISVVTACT 253

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L +   G   H +I K  ++  + +  AL+  Y   G ++ A KVF     +++ +++T
Sbjct: 254 HLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWST 313

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
            I G A        L LF  M+   I P+  TF+++   C+ +     G+     + ++ 
Sbjct: 314 AIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDH 373

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---YTREGKIER 297
           G +   +     ++++Y + G +  A    +TM +     AW ++++    Y      E 
Sbjct: 374 G-IEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEF 432

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           A +   +++ ++  ++ ++ + Y+  G + +   +   M++ GI
Sbjct: 433 ASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGI 476


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/712 (34%), Positives = 391/712 (54%), Gaps = 42/712 (5%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQID 69
           LL +    K+LK    IH  +  +  N+  S  +QL S   L    + +  +R LF  + 
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             N+  W+ LM GY ++ +P E   L+  M+ K  + PN +     ++SC     +  G 
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDS-QMYVEGK 143

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q H + +K GLEF  +++NALI  YS    +  A ++       D+  YN ++NG  Q  
Sbjct: 144 QCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHT 203

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNML 248
               A+ + + +    I+ +  T+V +F  C  L D  +GKQ HA + K ++ C   ++ 
Sbjct: 204 HMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDC---DVY 260

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + +++I+MY KCG                      +++SG          R  FD++  R
Sbjct: 261 IGSSIIDMYGKCG----------------------NVLSG----------RTFFDRLQSR 288

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           ++VSWT++I+ Y Q   F +AL LF KME   I P+E TM  +  +  GL AL  G +LH
Sbjct: 289 NVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLH 348

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            +  ++ + G N+ +  A+I MY K G I  A SVF  +      +  +N+II+G + HG
Sbjct: 349 ARAEKSGLKG-NVMVGNALIIMYFKSGDILAAQSVFSNM--TCCNIITWNAIITGHSHHG 405

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHY 487
           LG+ ++++F++M   G +P+ VTF+ V+ AC+H  LV+EG  +F  ++  + I P +EHY
Sbjct: 406 LGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHY 465

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C+V LL+R GRLDEA   ++S   + + V WR LL AC +H++   G    + LL LEP
Sbjct: 466 TCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEP 525

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
                Y+LLSNM A   RW+   ++RKLM +  ++K PG S++E     H F +    HP
Sbjct: 526 RDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHP 585

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           +   I   +KD+  K++  GYVP+   V+ D+++E+K   +SYHSEKLA+A+GL+ + S 
Sbjct: 586 EANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSG 645

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             I + KNLR+C DCH A KL+S++  R I+VRDA RFH F+ G CSC D+W
Sbjct: 646 APITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 156/327 (47%), Gaps = 9/327 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           ++  L  S K +    Q+H Q++ S ++  +   S +I  +   G    +   R  F ++
Sbjct: 229 TIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCG---NVLSGRTFFDRL 285

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + N+  W +++  Y +++  +EAL L++ M     + PN +T   + NS A LS+   G
Sbjct: 286 QSRNVVSWTSIIAAYFQNEFFEEALNLFSKM-EIDCIPPNEYTMAVLFNSAAGLSALCLG 344

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H    K GL+ ++ + NALI  Y   G I  A  VF      +++++N +I G++  
Sbjct: 345 DQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHH 404

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL +F+ M  +  +P+  TF+ +  AC  L     G  +   + K    V   + 
Sbjct: 405 GLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIV-PGLE 463

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---QM 305
             T ++ + ++ G ++ AE    +  ++    +W ++++        ++ R++ +   Q+
Sbjct: 464 HYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQL 523

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALEL 332
           + RD+ ++  + + +++V  +   +E+
Sbjct: 524 EPRDVGTYILLSNMHARVRRWDHVVEI 550



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 138/314 (43%), Gaps = 39/314 (12%)

Query: 214 VAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + +     +  + + G+  HA +   N     S +    ++IN+Y KC  +++A ++F +
Sbjct: 23  IKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDS 82

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M   ++  +WS++++GY + G      +LF +M  +D                       
Sbjct: 83  MP-RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKD----------------------- 118

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN-VVFGRNIFLTTAVIDMY 391
                   I P+E  +   + +C     ++ GK+ H   +++ + F +  ++  A+I +Y
Sbjct: 119 -------NIFPNEYVIATAISSCDSQMYVE-GKQCHGYALKSGLEFHQ--YVKNALIQLY 168

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           +KC  +  A+ + Y +P N   +  +N +++GL QH     ++ V + +   G++ +  T
Sbjct: 169 SKCSDVGAAIQILYTVPGN--DIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNAT 226

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           +VT+   C+    +  GKQ    ML   I   +     ++D+  + G +         + 
Sbjct: 227 YVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQ 286

Query: 512 YDANSVIWRALLAA 525
              N V W +++AA
Sbjct: 287 -SRNVVSWTSIIAA 299


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/716 (34%), Positives = 405/716 (56%), Gaps = 49/716 (6%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           ++L++ E+C    SL+    +HG +V   +  + S +   S   + G    L+ +  LF 
Sbjct: 203 TMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN--SLIVMYGKLGDLYSAERLFE 260

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +       W  ++  Y++S   QEAL ++  M  +  + PN  T   VL +CARL   K
Sbjct: 261 NVPCRMTAPWTPMISCYNQSGCFQEALNVFAKM-QEFKMEPNQVTMVGVLCACARLGRVK 319

Query: 127 SGCQIHCHIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            G  +H  +I+  ++ +L F+  AL+  Y+  G + + HKVFE    + ++S+NTLI+ +
Sbjct: 320 EGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIF 379

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            +  +P  AL LF +MQ   + PD+++  +  SAC  ++  ++G Q H  + K       
Sbjct: 380 TRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT---GNF 436

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N  ++ A+I+MYAKCG                                 +  A ++F+++
Sbjct: 437 NDFVQNALIDMYAKCGF--------------------------------VHSANKMFEKI 464

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
            ++ LV+W +MI G+SQ G   +A+ LF +M    +  D++T ++V++AC  LG L+ GK
Sbjct: 465 KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGK 524

Query: 366 RLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            +H + I   ++G  ++ +L TA+ DMY+KCG +  A  VF ++ +  +++  ++ +I+G
Sbjct: 525 WVHHKLI---MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSE--RSIVSWSVMIAG 579

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
              HG    +I++F +M   G+KP+ +TF+ +L ACSH G VEEGK +F SM  +G++P+
Sbjct: 580 YGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPK 639

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +H+ CMVDLL+R G L+ AY +I S+P+ ANS IW ALL  CR+H+   I +   + LL
Sbjct: 640 HDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLL 699

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           D++     +Y LLSN+ AE   W++  +VR +M   G++K PG+S IE +  ++RF    
Sbjct: 700 DVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGD 759

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SH QTK+I   L++    + +  Y       +    +  KE  V  HSEKLA+AFG+IN
Sbjct: 760 TSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIIN 819

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +R   T+RI+KNLR+C DCH   K+ S+I  REI++RD  RFH F+ G+CSC D+W
Sbjct: 820 TRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 251/523 (47%), Gaps = 46/523 (8%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS-RILFSQID 69
           + L   C +     Q+H  +  +GL+ H  +S++LI  +A    + G+F S + +F    
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYA----QIGIFESSKRVFDTFP 60

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            P+ F+W  L++ Y      +EA+ LY  M+ +     +NF FP VL +C+       G 
Sbjct: 61  KPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGG 120

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++H  +IK G E D  +  +L+  Y     +++A K F+    RD+V++++++  + Q  
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNG 180

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           +    L +F +M    ++PD+ T +++  AC+EL   R+G+  H  V +    + SN  L
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE--IESNASL 238

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++I MY K G +  AER+F  +   + TA W+ MIS Y                    
Sbjct: 239 NNSLIVMYGKLGDLYSAERLFENVP-CRMTAPWTPMISCY-------------------- 277

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                      +Q G F +AL +F KM+   + P++VTMV VL AC  LG +  G+ +H 
Sbjct: 278 -----------NQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHG 326

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             I   +     FL  A++++YA  G++     VF  I +  KT+  +N++IS   ++G 
Sbjct: 327 FVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKE--KTILSWNTLISIFTRNGQ 384

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
            E ++ +F +M+  GL PD  +  + L AC      + G Q    ++  G          
Sbjct: 385 PEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQ-NA 443

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           ++D+ A+ G +  A  + + +  + + V W +++  C   +N 
Sbjct: 444 LIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMI--CGFSQNG 483


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 350/590 (59%), Gaps = 7/590 (1%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IHCH IK     D F+   L+  Y    YI++A K+F  +   ++  Y +LI+G+     
Sbjct: 46  IHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGS 105

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              A+ LF +M    +  D +   AM  AC        GK+ H +V K+   +G +  + 
Sbjct: 106 YTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKS--GLGLDRSIA 163

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             ++ +Y KCG++  A ++F  M   +   A + MI      G +E A ++F++M  RD 
Sbjct: 164 LKLVELYGKCGVLEDARKMFDGMP-ERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDT 222

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V WT +I G  + G F++ LE+F +M+  G+ P+EVT V VL AC  LGAL+ G+ +H  
Sbjct: 223 VCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHA- 281

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y+       N F+  A+I+MY++CG ID A ++F  +   +K VS +NS+I GLA HG  
Sbjct: 282 YMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGV--RVKDVSTYNSMIGGLALHGKS 339

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGC 489
             ++ +F EM    ++P+G+TFV VL ACSHGGLV+ G + FESM + +GI+P++EHYGC
Sbjct: 340 IEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGC 399

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVD+L R GRL+EA+  I  M  +A+  +  +LL+AC++H+N  +GE   + L +     
Sbjct: 400 MVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRID 459

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              +++LSN  A   RW  A +VR+ M+  GI K PG S IE N  +H F +    HP+ 
Sbjct: 460 SGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPER 519

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           K I   L+++    K  GY+P T   + D+D+E+KE  ++ HSE+LA+ +GL+++ +  T
Sbjct: 520 KRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTT 579

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +R+ KNLRIC DCH   KL+++I RR+I+VRD  RFH F+ G CSC D+W
Sbjct: 580 LRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 155/318 (48%), Gaps = 42/318 (13%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF    NPN++++ +L+ G+    S  +A+ L+  M+ K +++ +N+    +L +C    
Sbjct: 81  LFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLA-DNYAVTAMLKACVLQR 139

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS------ 177
           +  SG ++H  ++K GL  D  I   L+  Y   G + +A K+F+G   RD+V+      
Sbjct: 140 ALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIG 199

Query: 178 -------------------------YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
                                    +  +I+G  +  E    L +FR+MQ   ++P+  T
Sbjct: 200 SCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVT 259

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           FV + SAC +L    +G+  HA + K   C V  N  +  A+INMY++CG ++ A+ +F 
Sbjct: 260 FVCVLSACAQLGALELGRWIHAYMRK---CGVEVNRFVAGALINMYSRCGDIDEAQALFD 316

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGFS 327
            + + K  + ++SMI G    GK   A +LF +M +  +    +++  +++  S  G   
Sbjct: 317 GVRV-KDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVD 375

Query: 328 QALELFGKMESL-GIHPD 344
              E+F  ME + GI P+
Sbjct: 376 LGGEIFESMEMIHGIEPE 393



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 175/375 (46%), Gaps = 37/375 (9%)

Query: 2   KRLVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHISSS-QLISFFALSG---- 53
           K ++ ++ ++ A+L++C   ++L    ++HG ++ SGL    S + +L+  +   G    
Sbjct: 119 KHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLED 178

Query: 54  ----------------------CKN-GLFRSRI-LFSQIDNPNIFIWNTLMRGYSRSDSP 89
                                 C + G+    I +F+++   +   W  ++ G  R+   
Sbjct: 179 ARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEF 238

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
              L ++  M  KG V PN  TF  VL++CA+L + + G  IH ++ K G+E + F+  A
Sbjct: 239 NRGLEVFREMQVKG-VEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGA 297

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           LI+ YS  G I+ A  +F+G   +D+ +YN++I G A   +   A+ LF +M    ++P+
Sbjct: 298 LINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPN 357

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             TFV + +AC+      +G +    +    G +   +     ++++  + G +  A   
Sbjct: 358 GITFVGVLNACSHGGLVDLGGEIFESMEMIHG-IEPEVEHYGCMVDILGRVGRLEEAFDF 416

Query: 270 FSTMGMSKSTAAWSSMISG---YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
              MG+        S++S    +   G  E+  +L  +  + D  S+  + + Y+ +G +
Sbjct: 417 IGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRW 476

Query: 327 SQALELFGKMESLGI 341
           S A E+  KME  GI
Sbjct: 477 SYAAEVREKMEKGGI 491


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/737 (33%), Positives = 389/737 (52%), Gaps = 63/737 (8%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           + +L    +  ++    Q+HG ++  G     +  + LI  +A  G    L  +  +F  
Sbjct: 8   ADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCG---ELRMAGEVFGG 64

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N+  W  LM G+ R    +E L L  +M S   V+PN FT    L +C  +    +
Sbjct: 65  MPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAA 124

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH   ++ G E    + N+L+  YS  G I +A +VF+G++ R+LV++N +I+GYA 
Sbjct: 125 GVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAH 184

Query: 188 VKEPCPALWLFRKMQ-----DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
                 +L +FR+MQ     +   QPD FTF ++  AC  L   R G Q HA +      
Sbjct: 185 AGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVS 244

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             SN +L  A+++MY KC       R    M M                        Q+F
Sbjct: 245 TASNAILAGALLDMYVKC-------RCLLPMAM------------------------QVF 273

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++++Q++ + WT +I G++Q G   +A+ELFG+  S G+  D   + +V+        ++
Sbjct: 274 NRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVE 333

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G+++H  Y      G ++ +  ++IDMY KCG  D A   F ++P   + V  + ++I+
Sbjct: 334 QGRQVHC-YTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPA--RNVVSWTAMIN 390

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIK 481
           GL +HG G+ +I +F EM   G++PD V ++ +L ACSH GLVEE +++F ++  +  ++
Sbjct: 391 GLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLR 450

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+ EHY CMVDLL R G L EA  L+ +MP      +W+ LL+ACR+H+N  +G  AG+ 
Sbjct: 451 PRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGET 510

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL- 600
           LL ++ D+  +YV+LSN+ AE   W E ++VR  M   G++K  G S++E     H F  
Sbjct: 511 LLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVGKEAHFFYG 570

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSA-GYVPNTV-----QVVFDVDEEEKETVVSYHSEK 654
               SHP+  +I  +L+D+   ++   GY P +        + DVDEE +   +  HSE+
Sbjct: 571 GGDDSHPRAADICCVLRDVERTMRERLGYSPGSSSSSSEAALHDVDEESRAESLRAHSER 630

Query: 655 LALAF------------GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           LA+              G+  ++ KE IR+ KNLR+CGDCH  FK LS +  R ++VRDA
Sbjct: 631 LAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVCGDCHEFFKGLSSVVGRVLVVRDA 690

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH F+ G CSC D+W
Sbjct: 691 NRFHRFEDGVCSCKDYW 707


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/775 (33%), Positives = 414/775 (53%), Gaps = 98/775 (12%)

Query: 6   LEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS 61
           L+H +L  +L++C    S +     HG I  +G   ++   + L++ ++  G    L  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG---SLEEA 171

Query: 62  RILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-----FTFP 113
            ++F +I      ++  WN+++  + +S +   AL L++ M       P N      +  
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +L +C  L +     ++H + I+ G   D+F+ NALI  Y+  G + NA KVF     +
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 174 DLVSYNTLINGYAQV--------------KEPCP---------------------ALWLF 198
           D+VS+N ++ GY+Q               KE  P                     AL +F
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--------LGCVGSNMLLK 250
           R+M  S   P+  T +++ SAC  L     G + HA   KN         G    ++++ 
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--MDQR 308
            A+I+MY+KC       R F                         + AR +FD   +++R
Sbjct: 412 NALIDMYSKC-------RSF-------------------------KAARSIFDDIPLEER 439

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++V+WT MI G++Q G  + AL+LF +M  E  G+ P+  T+  +L AC  L A+  GK+
Sbjct: 440 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 499

Query: 367 LHQQYIENVVFGRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           +H   + +  +  +  F+   +I+MY+KCG +DTA  VF  + +  K+   + S+++G  
Sbjct: 500 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ--KSAISWTSMMTGYG 557

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            HG G  ++ +F +M   G  PD +TF+ VL ACSH G+V++G  +F+SM  +YG+ P+ 
Sbjct: 558 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 617

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY   +DLLAR GRLD+A+  ++ MP +  +V+W ALL+ACR+H N ++ E A  KL++
Sbjct: 618 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 677

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           +  ++   Y L+SN+ A   RW++  ++R LM  SGI+K PG S+++       F    +
Sbjct: 678 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 737

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHP + +I  +L+ +  ++K+ GYVP T   + DVDEEEK  ++  HSEKLALA+GL+ +
Sbjct: 738 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 797

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                IRITKNLR+CGDCH AF  +S+I   EI+VRD  RFH FK G+CSC  +W
Sbjct: 798 FPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/775 (33%), Positives = 414/775 (53%), Gaps = 98/775 (12%)

Query: 6   LEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS 61
           L+H +L  +L++C    S +     HG I  +G   ++   + L++ ++  G    L  +
Sbjct: 8   LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG---SLEEA 64

Query: 62  RILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-----FTFP 113
            ++F +I      ++  WN+++  + +S +   AL L++ M       P N      +  
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +L +C  L +     ++H + I+ G   D+F+ NALI  Y+  G + NA KVF     +
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 174 DLVSYNTLINGYAQV--------------KEPCP---------------------ALWLF 198
           D+VS+N ++ GY+Q               KE  P                     AL +F
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--------LGCVGSNMLLK 250
           R+M  S   P+  T +++ SAC  L     G + HA   KN         G    ++++ 
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--MDQR 308
            A+I+MY+KC       R F                         + AR +FD   +++R
Sbjct: 305 NALIDMYSKC-------RSF-------------------------KAARSIFDDIPLEER 332

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++V+WT MI G++Q G  + AL+LF +M  E  G+ P+  T+  +L AC  L A+  GK+
Sbjct: 333 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 392

Query: 367 LHQQYIENVVFGRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           +H   + +  +  +  F+   +I+MY+KCG +DTA  VF  + +  K+   + S+++G  
Sbjct: 393 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ--KSAISWTSMMTGYG 450

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
            HG G  ++ +F +M   G  PD +TF+ VL ACSH G+V++G  +F+SM  +YG+ P+ 
Sbjct: 451 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 510

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY   +DLLAR GRLD+A+  ++ MP +  +V+W ALL+ACR+H N ++ E A  KL++
Sbjct: 511 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 570

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           +  ++   Y L+SN+ A   RW++  ++R LM  SGI+K PG S+++       F    +
Sbjct: 571 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 630

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           SHP + +I  +L+ +  ++K+ GYVP T   + DVDEEEK  ++  HSEKLALA+GL+ +
Sbjct: 631 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 690

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                IRITKNLR+CGDCH AF  +S+I   EI+VRD  RFH FK G+CSC  +W
Sbjct: 691 FPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/691 (36%), Positives = 381/691 (55%), Gaps = 65/691 (9%)

Query: 50  ALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN 109
           A   C +     R + SQ  +  + IW    R  ++S S    L           + P N
Sbjct: 94  AQPSCSHHHPSHRQIQSQGTDSVVTIWFCSERNITKSSSNSNFL---------DFMKPKN 144

Query: 110 --FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
             F  P +     + ++F +  QIH  II  GL F  +  + LI   S F  +  A K+F
Sbjct: 145 HIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKFN-LPYAFKIF 203

Query: 168 EGSLARDLVSYNTLINGY---AQVKEPCPALWLFRK-MQDSCIQPDAFTFVAMFSAC-TE 222
                  +  YNTLI+         +   A  L+ K + +  +QP++FTF ++F AC + 
Sbjct: 204 NYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSN 263

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
            +    G   H  V K L     N  ++ +++N YAK G M ++                
Sbjct: 264 QSWFHYGPLLHTHVLKFLQPPFDN-FVQASLLNFYAKYGKMCVS---------------- 306

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV------------GGFS-QA 329
                           R +FD++++ DL +W  +++ Y++               FS ++
Sbjct: 307 ----------------RYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLES 350

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           L LF  M+ +GI P+EVT+VA++ AC  LGA+  G  +H   + N +   N F+ TA +D
Sbjct: 351 LYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKI-KMNRFVGTAFVD 409

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MY+KCG ++ A  VF K+P+N +    + ++I G A HG G  ++ ++R+M+  GL PD 
Sbjct: 410 MYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDS 469

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            TFV  + ACSH GLVEEG + F+SM   +G++P++EHYGC++DLL R GRL EA   + 
Sbjct: 470 ATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLA 529

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568
            MP   N+V+WR+LL A R+H N  +GE+A  KL++LEP+   +YVLLSNM A   R  +
Sbjct: 530 DMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVND 589

Query: 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628
            ++VRKLM   G+ K PG+S +E  G +H FL   +SHP +KEI L + ++  +L+  G+
Sbjct: 590 VKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGH 649

Query: 629 VPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
              T + +FD++EE+KE V+SYHSE+LA+AF LI S S   IRI KNLR+CGDCH   KL
Sbjct: 650 KARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKL 709

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S  Y REI+VRD  RFH FK G+CSC+D+W
Sbjct: 710 ISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 214/461 (46%), Gaps = 57/461 (12%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS 61
           K  +  H +L  L + C +     QIH QI+ +GL+     +  +S       K  L  +
Sbjct: 143 KNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSF---QTYCLSHLIKISSKFNLPYA 199

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQE---ALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +F+ I NP IF++NTL+       +  +   A  LY  +L+   + PN+FTFP +  +
Sbjct: 200 FKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKA 259

Query: 119 C-ARLSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           C +  S F  G  +H H++KF    FD F++ +L++FY+ +G +  +  +F+     DL 
Sbjct: 260 CCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLA 319

Query: 177 SYNTLINGYAQVKE-------------PCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
           ++N ++N YA+                   +L+LFR MQ   I+P+  T VA+ SAC+ L
Sbjct: 320 TWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNL 379

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS-KSTAAW 282
                G   H  V +N   +  N  + TA ++MY+KCG +N+A +VF  M  + + +  +
Sbjct: 380 GAVSQGFWVHCFVLRNK--IKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCY 437

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           ++MI G+                           + GY      +QALEL+ KM+  G+ 
Sbjct: 438 TAMIGGFA--------------------------VHGYG-----NQALELYRKMKFKGLV 466

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD  T V  + AC  +G ++ G  + +   E       +     +ID+  + G +  A  
Sbjct: 467 PDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEE 526

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHG-LGETSIAVFREMEL 442
               +P     V L+ S++     HG LG   +A+ + +EL
Sbjct: 527 WLADMPMKPNAV-LWRSLLGAARIHGNLGVGEVALTKLIEL 566



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 41/327 (12%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR-------------SDSP 89
           + L++F+A  G    +  SR +F +I+ P++  WN ++  Y+R             +D  
Sbjct: 291 ASLLNFYAKYG---KMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFS 347

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
            E+L L+  M   GI  PN  T   ++++C+ L +   G  +HC +++  ++ + F+  A
Sbjct: 348 LESLYLFRDMQVIGI-RPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTA 406

Query: 150 LIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
            +  YS  G +N A +VF+      RD   Y  +I G+A       AL L+RKM+   + 
Sbjct: 407 FVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLV 466

Query: 208 PDAFTFVAMFSACTELNDPRIG-------KQFHAVVYK--NLGCVGSNMLLKTAVINMYA 258
           PD+ TFV    AC+ +     G       K+ H V  K  + GC          +I++  
Sbjct: 467 PDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGC----------LIDLLG 516

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFDQMDQRDLVSWTA 315
           + G +  AE   + M M  +   W S++      G +   E A     +++     ++  
Sbjct: 517 RAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVL 576

Query: 316 MISGYSQVGGFSQALELFGKMESLGIH 342
           + + Y+ VG  +    +   M+  G++
Sbjct: 577 LSNMYASVGRVNDVKRVRKLMKHHGVN 603


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/793 (33%), Positives = 412/793 (51%), Gaps = 87/793 (10%)

Query: 4   LVLEHSSLLALLESCKSLKQA---LQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           + ++  +  ++L++C +L ++    +IHG  V  G    +   + LI+ +   G   G  
Sbjct: 141 VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGG-- 198

Query: 60  RSRILFSQI--DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
            +R+LF  I  +  +   WN+++  +       EAL L+  M   G+ S N +TF   L 
Sbjct: 199 -ARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVAS-NTYTFVAALQ 256

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
                S  K G  IH   +K     D+++ NALI  Y+  G + +A +VF   L RD VS
Sbjct: 257 GVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVS 316

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +NTL++G  Q +    AL  FR MQ+S  +PD  + + + +A     +   GK+ HA   
Sbjct: 317 WNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAI 376

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE----- 292
           +N   + SNM +   +I+MYAKC  +      F  M   K   +W+++I+GY +      
Sbjct: 377 RN--GLDSNMQIGNTLIDMYAKCCCVKHMGYAFECM-HEKDLISWTTIIAGYAQNECHLE 433

Query: 293 --------------------GKIERA-------------------RQLFDQMDQRDLV-- 311
                               G + RA                   R L D M Q  +V  
Sbjct: 434 AINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNV 493

Query: 312 -----------------------SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                                  SWT+MI+     G   +ALELF  ++   I PD + +
Sbjct: 494 YGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAI 553

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++ L A   L +L  GK +H   I    F     + ++++DMYA CG+++ +  +F+ + 
Sbjct: 554 ISALSATANLSSLKKGKEIHGFLIRKGFFLEGP-IASSLVDMYACCGTVENSRKMFHSVK 612

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  + + L+ S+I+    HG G  +IA+F++M    + PD +TF+ +L ACSH GL+ EG
Sbjct: 613 Q--RDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEG 670

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           K+FFE M   Y ++P  EHY CMVDLL+R   L+EAY  ++SMP   +S +W ALL AC 
Sbjct: 671 KRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACH 730

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           +H N ++GE+A ++LL  +  +   Y L+SN+ A   RW +  +VR  M  +G++K PG 
Sbjct: 731 IHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGC 790

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKET 646
           S+IE +  +H F+A  KSHPQT +I L L   T  L K  GY+  T  V  +V EEEK  
Sbjct: 791 SWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQ 850

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
           ++  HSE+LAL +GL+ +    +IRITKNLRIC DCH  FK+ SE+ +R ++VRDA RFH
Sbjct: 851 MLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFH 910

Query: 707 LFKKGNCSCMDFW 719
            F++G CSC DFW
Sbjct: 911 HFERGLCSCGDFW 923



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 144/529 (27%), Positives = 250/529 (47%), Gaps = 52/529 (9%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           RL   HS LL L  + K+L Q  Q+H +++ S L+  +++  L  +      K+ +    
Sbjct: 44  RLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAV---- 99

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F ++    IF WN +M  +  S    EA+ LY  M   G V+ +  TFP VL +C  L
Sbjct: 100 KVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLG-VAIDACTFPSVLKACGAL 158

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL--ARDLVSYNT 180
              + G +IH   +K G    +F+ NALI  Y   G +  A  +F+G +    D VS+N+
Sbjct: 159 GESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNS 218

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+ +    +   AL LFR+MQ+  +  + +TFVA      + +  ++G   H    K+ 
Sbjct: 219 IISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSN 278

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
               +++ +  A+I MYAKCG M  AERVF++M + +   +W++++SG            
Sbjct: 279 HF--ADVYVANALIAMYAKCGRMEDAERVFASM-LCRDYVSWNTLLSGLV---------- 325

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                 Q +L               +  AL  F  M++    PD+V+++ ++ A    G 
Sbjct: 326 ------QNEL---------------YRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGN 364

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L  GK +H   I N +   N+ +   +IDMYAKC  +      F  + +  K +  + +I
Sbjct: 365 LLNGKEVHAYAIRNGL-DSNMQIGNTLIDMYAKCCCVKHMGYAFECMHE--KDLISWTTI 421

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           I+G AQ+     +I +FR++++ G+  D +   +VL ACS  GL  + + F   +  Y  
Sbjct: 422 IAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GL--KSRNFIREIHGYVF 477

Query: 481 KPQMEHY---GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           K  +        +V++    G  D A    +S+    + V W +++  C
Sbjct: 478 KRDLADIMLQNAIVNVYGEVGHRDYARRAFESI-RSKDIVSWTSMITCC 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 5/253 (1%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           + ++  Y + G ++ A ++FD+M +R + +W AM+  +   G + +A+EL+ +M  LG+ 
Sbjct: 83  TKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVA 142

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D  T  +VL+AC  LG    G  +H   ++   FG  +F+  A+I MY KCG +  A  
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVK-CGFGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           +F  I    +    +NSIIS     G    ++++FR M+ +G+  +  TFV  L      
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
             V+ G     + L       +     ++ + A+ GR+++A  +  SM    + V W  L
Sbjct: 262 SFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASM-LCRDYVSWNTL 320

Query: 523 LAAC---RLHRNA 532
           L+      L+R+A
Sbjct: 321 LSGLVQNELYRDA 333


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/719 (33%), Positives = 395/719 (54%), Gaps = 53/719 (7%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + +A+L +C   +SLK  ++IHGQI+  G    +   + LI+ +   G   G + S   F
Sbjct: 107 TYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDS---F 163

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++++ ++  W  ++    + D    A  LY  M   G+V PN  T   V N+    +  
Sbjct: 164 KRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV-PNKITLYTVFNAYGDPNYL 222

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  ++  +    +E D+ + N+ ++ +   G + +A ++FE  + RD+V++N +I  Y
Sbjct: 223 SEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLY 282

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q +    A+ LF ++Q   ++ +  TFV M +  T L     GK  H +V K  G    
Sbjct: 283 VQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELV-KEAG-YDR 340

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           + ++ TA++++Y +C     A ++F  MG                               
Sbjct: 341 DAVVATALMSLYGRCEAPGQAWKIFVDMG------------------------------- 369

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             +D+++WT M   Y+Q G   +AL+LF +M+  G  P   T+VAVL  C  L AL  G+
Sbjct: 370 -SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGR 428

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H   IEN  F   + + TA+I+MY KCG +  A+SVF K+ K  + + ++NS++   A
Sbjct: 429 QIHSHIIENR-FRMEMVVETALINMYGKCGKMAEAMSVFEKMAK--RDILVWNSMLGAYA 485

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQM 484
           QHG  + ++ +F +M+L G+K D V+FV+VL A SH G V +G Q+F +ML ++ I P  
Sbjct: 486 QHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTP 545

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSM----PYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           E YGC+VDLL R GR+ EA  ++  +    P   + ++W  LL ACR H      + A +
Sbjct: 546 ELYGCVVDLLGRAGRIQEAVDIVLKLSGCLP---DGILWMTLLGACRTHNKTDQAKAAAE 602

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           ++L+ +P H   YV+LSN+ A    W+   ++RKLM   G++K PG S IE    +H FL
Sbjct: 603 QVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFL 662

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
              +SHP+   I   L  +  ++++AGY+P+T  ++ DV++E KE ++ YHSE+LA+AFG
Sbjct: 663 EGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFG 722

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LI++     +R+ KNLR+C DCH A K +S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 723 LISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 169/367 (46%), Gaps = 37/367 (10%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+   F  +L  C+   +   G ++H H+   G E +  +   LI  Y+  G +  A +V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           FE    +D+ ++  +I  Y Q  +   AL +F +MQ+  + P   T+VA+ +AC      
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           + G + H  + +  G  G ++ + TA+INMY KCG +                 AW S  
Sbjct: 122 KDGMEIHGQILQQ-GFEG-DVFVGTALINMYNKCGSVR---------------GAWDS-- 162

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                          F +++ RD+VSWTAMI+   Q   F+ A  L+ +M+  G+ P+++
Sbjct: 163 ---------------FKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKI 207

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T+  V  A      L  GK ++   + + V   ++ +  + ++M+   G +  A  +F  
Sbjct: 208 TLYTVFNAYGDPNYLSEGKFVY-GLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFED 266

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +    + V  +N +I+   Q+     ++ +F  ++  G+K + +TFV +L   +    + 
Sbjct: 267 MVD--RDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLA 324

Query: 467 EGKQFFE 473
           +GK   E
Sbjct: 325 KGKVIHE 331



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 174/381 (45%), Gaps = 45/381 (11%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           +PD   FVA+   C+   +   G++ H  V ++ G    N L+   +I MYA+CG +  A
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHV-RDRG-FEQNNLVCGHLIQMYAQCGSVPEA 58

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
           ++VF  +   K   AW+ MI  Y ++G  +RA  +F QM + D++               
Sbjct: 59  QQVFEIL-ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVM--------------- 102

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
                           P +VT VA+L AC    +L  G  +H Q ++    G ++F+ TA
Sbjct: 103 ----------------PTKVTYVAILNACASTESLKDGMEIHGQILQQGFEG-DVFVGTA 145

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +I+MY KCGS+  A   F ++    + V  + ++I+   QH     +  ++R M+L G+ 
Sbjct: 146 LINMYNKCGSVRGAWDSFKRLEH--RDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 203

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHYGCMVDLLARDGRLDEAYG 505
           P+ +T  TV  A      + EGK F   +++ G+ +  +      V++    G L +A  
Sbjct: 204 PNKITLYTVFNAYGDPNYLSEGK-FVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARR 262

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGE---IAGQKLLDLEPDHGAHYVLLSNMLAE 562
           L + M  D + V W  ++      +N   GE   + G+   D    +   +VL+ N+   
Sbjct: 263 LFEDM-VDRDVVTWNIVITL--YVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 563 TYRWEEARQVRKLMDDSGIQK 583
                + + + +L+ ++G  +
Sbjct: 320 LTSLAKGKVIHELVKEAGYDR 340


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/661 (36%), Positives = 368/661 (55%), Gaps = 43/661 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F  + +P+  +WNTL+ G S S    EA+  +  M+  G V P+  T   VL + A
Sbjct: 168 ARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLPAAA 223

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            ++    G  +H    K GL     +   LI  YS  G + +A  +F+     DLV+YN 
Sbjct: 224 EVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNA 283

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI+GY+       ++ LF ++    + P++ T VA+    +      + +  H  V K+ 
Sbjct: 284 LISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKS- 342

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
                                            G + ++   +++ + + R   +E AR+
Sbjct: 343 ---------------------------------GFTANSPVSTAITTLHCRLNDMESARK 369

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
            FD M ++ + SW AMISGY+Q G    A+ LF +M  L + P+ +T+ + L AC  LGA
Sbjct: 370 AFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGA 429

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L  GK LH+   E  +   N+++ TA+IDMYAKCGSI  A  +F  +  + K V  +N++
Sbjct: 430 LSLGKWLHRIITEEDL-EPNVYVMTALIDMYAKCGSISEARRIFNTM--DNKNVVSWNAM 486

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I+G   HG G  ++ ++++M    L P   TF++VL ACSHGGLVEEG + F SM + Y 
Sbjct: 487 IAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYA 546

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIA 538
           I P +EH  CMVDLL R G+L EA+ LI   P  A    +W ALL AC +H+++ + ++A
Sbjct: 547 INPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLA 606

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            QKL +L+P++  +YVLLSN+     ++ EA  VR+      + K PG++ IE     H 
Sbjct: 607 SQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHV 666

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F+A  ++HPQ++ I   L+ +T K+  AGY P T   ++DV+EEEKE +V  HSEKLA+A
Sbjct: 667 FMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIA 726

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGL+++     IRI KNLR+C DCH A K +S++ +R I+VRDA RFH F+ G CSC D+
Sbjct: 727 FGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDY 786

Query: 719 W 719
           W
Sbjct: 787 W 787



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 27  IHGQIVHSGLNHHISSSQLISFFALSGCK-NGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +HG ++ SG   +   S  I+      C+ N +  +R  F  +    +  WN ++ GY++
Sbjct: 335 LHGFVLKSGFTANSPVSTAITTL---HCRLNDMESARKAFDTMPEKTMESWNAMISGYAQ 391

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +   + A+ L+  M+ K  V PN  T    L++CA+L +   G  +H  I +  LE +++
Sbjct: 392 NGLTEMAVALFEQMV-KLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVY 450

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           +  ALI  Y+  G I+ A ++F     +++VS+N +I GY    +   AL L++ M D+ 
Sbjct: 451 VMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAH 510

Query: 206 IQPDAFTFVAMFSACT 221
           + P + TF+++  AC+
Sbjct: 511 LLPTSATFLSVLYACS 526


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/526 (42%), Positives = 329/526 (62%), Gaps = 39/526 (7%)

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK-----------------------CGLM- 263
           +G   HA   ++ G   +++ ++TA++ MYAK                       C +M 
Sbjct: 65  LGASLHARALRS-GFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVML 123

Query: 264 ---------NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
                      A +VF  M   +   +W++MI GY   G +  AR++FD    RD  SW+
Sbjct: 124 AAYVARGEVAEARKVFDGMS-GRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWS 182

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           +MIS Y++     +ALEL+ +M   G+ PD ++MV+VL AC  +GAL  G  +H+ ++E+
Sbjct: 183 SMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHR-FVES 241

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                ++ L TA++DMYAKCG I+ +L VF+ +P  +K V  ++S+I GLA HGLG  ++
Sbjct: 242 NRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMP--VKDVLTWSSMIIGLANHGLGHDAL 299

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDL 493
           ++F EM   GL+P+ +TF+ VL AC+H GLV +GK++F SM + +G+ P+MEHYGCMVDL
Sbjct: 300 SLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDL 359

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           L R G ++EA  LI+SM +  + +IWR LL ACR+H+N +I E A  KL  L+P    HY
Sbjct: 360 LGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHY 419

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLLSN+ A+   WE   ++RK +    IQ+ PG S IE   T+H F++  +SHP+ +EI 
Sbjct: 420 VLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIY 479

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
            ML++M  +L+ AGY P T  V+ D+DE+ K+  ++ HSEKLA+AFGL+ + ++ T+RIT
Sbjct: 480 KMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRIT 539

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR C DCH A KL+S  Y R+++VRD  RFH F +G CSC D+W
Sbjct: 540 KNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 129/270 (47%), Gaps = 5/270 (1%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + +I  +A+ G    +  +R +F    + + F W++++  Y++    +EAL L+  M
Sbjct: 148 VSWNTMIHGYAVRG---DVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM 204

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
              G V+P+  +   VL++C+ + +   G ++H  +    +E D+ +  AL+  Y+  G 
Sbjct: 205 RVAG-VAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGD 263

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I N+ KVF     +D+++++++I G A       AL LF +M    +QP+  TF+ +  A
Sbjct: 264 IENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIA 323

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT +     GK++ + +    G V   M     ++++  + G +  A  +  +M      
Sbjct: 324 CTHVGLVNDGKKYFSSMSDVHGVV-PRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDP 382

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRD 309
             W +++        +E A +   ++   D
Sbjct: 383 IIWRTLLGACRIHKNVEIAEEAMAKLKVLD 412


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/722 (33%), Positives = 395/722 (54%), Gaps = 49/722 (6%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQID--NPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           ++++ L+S +A++G    L  S   F  +     +  + N ++  ++R+     A+ ++ 
Sbjct: 90  VAATSLVSAYAVAG---RLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFR 146

Query: 98  SML-SKGIVSPNNFTFPFVLNSCARLSSFK-SGC-QIHCHIIKFGLEFDLFIRNALIHFY 154
           S+L S   + P++++F  +L++  ++     S C Q+HC + K G    L + NALI  Y
Sbjct: 147 SLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALY 206

Query: 155 ---SIFGYINNAHKVFEGSLARDL-------------------------------VSYNT 180
                 G   +A KV +    +D                                V +N 
Sbjct: 207 MKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNA 266

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA--VVYK 238
           +I+GY Q      A  LFR+M    I PD FTF ++ SAC        GK  H   +  +
Sbjct: 267 MISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQ 326

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                 + + +  A++ +Y+K G + +A ++F +M + K   +W++++SGY   G ++ A
Sbjct: 327 PDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTL-KDVVSWNTILSGYIESGCLDNA 385

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            ++F +M  +  +SW  M+SGY   G    AL+LF +M S  + P + T    + AC  L
Sbjct: 386 ARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGEL 445

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GAL  GK+LH   ++   F  +     A++ MYA+CG++  A  VF  +P N+ +VS +N
Sbjct: 446 GALKHGKQLHAHLVQ-CGFEASNSAGNALLTMYARCGAVKDARLVFLVMP-NVDSVS-WN 502

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
           ++IS L QHG G  ++ +F +M   G+ PD ++F+T+L AC+H GLV++G Q+FESM  +
Sbjct: 503 AMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERD 562

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI P  +HY  ++DLL R GR+ EA  LI++MP++    IW A+L+ CR++ + ++G  
Sbjct: 563 FGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAY 622

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A  +L  + P+H   Y+LLSN  +   RW +A +VRKLM D G++K PG S+IE    +H
Sbjct: 623 AADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVH 682

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            FL     HP   E+   L+ +  K++  GYVP+T   + D+   EKE V+  HSE+LA+
Sbjct: 683 VFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAV 742

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           +FGL+   +  T+ + KNL+ICGDCH A   +S    REI+VRD  RFH FK G CSC +
Sbjct: 743 SFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGN 802

Query: 718 FW 719
           +W
Sbjct: 803 YW 804


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/718 (34%), Positives = 390/718 (54%), Gaps = 49/718 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFS 66
           S++ A  ES    ++  Q+HG  + +GLN       + LI+ +A  G    +  +R +F 
Sbjct: 106 SAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCG---DIDHARSVFG 162

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            + + +   WN+++ G  ++   ++A+  Y SM   G++ P+NF     L+SCA L    
Sbjct: 163 LMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM-PSNFALISALSSCASLGCIL 221

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q H   IK GL+ D+ + N L+  Y+    +    KVF   L RD VS+NT+I   A
Sbjct: 222 LGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALA 281

Query: 187 QVKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                   A+ +F +M  +   P+  TF+ + +  + L+  ++  Q HA++ K       
Sbjct: 282 DSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILK------- 334

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                                        +    A  +++++ Y + G++E   ++F +M
Sbjct: 335 ---------------------------YNVKDDNAIENALLACYGKSGEMENCEEIFSRM 367

Query: 306 -DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
            ++RD VSW +MISGY       +A++L   M   G   D  T   VL AC  +  L+ G
Sbjct: 368 SERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECG 427

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             +H   I       ++ + +A++DMY+KCG ID A   F  +P  ++ +  +NS+ISG 
Sbjct: 428 MEVHACAIR-ACLESDVVIGSALVDMYSKCGRIDYASRFFNLMP--VRNLYSWNSMISGY 484

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           A+HG G+ ++ +F  M+L G  PD +TFV VL ACSH GLV+EG ++F+SM   YG+ P+
Sbjct: 485 ARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPR 544

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH--RNAKIGEIAGQK 541
           +EHY CMVDLL R G LD+    I  MP   N +IWR +L AC     R  ++G  A + 
Sbjct: 545 VEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEM 604

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L +++P +  +YVLLSNM A   +WE+  + R+ M ++ ++K  G S++     +H F+A
Sbjct: 605 LFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVA 664

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
              SHP+   I   LK++  K++ AGYVP     ++D++ E KE ++SYHSEKLA+AF +
Sbjct: 665 GDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-V 723

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +   S   IRI KNLR+CGDCH AFK +S++  R I++RD+ RFH F+ G CSC D+W
Sbjct: 724 LTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 212/465 (45%), Gaps = 44/465 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++ + N   W  L+ GY+++  P++A  +   M+ +G + PN F F   + +C 
Sbjct: 54  ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL-PNRFAFGSAIRACQ 112

Query: 121 RLSSF-KSGCQIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
               + + G Q+H + I+ GL +  + + N LI+ Y+  G I++A  VF   + +D VS+
Sbjct: 113 ESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSW 172

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N++I G  Q K    A+  +  M+ + + P  F  ++  S+C  L    +G+Q H    K
Sbjct: 173 NSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIK 232

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                                             +G+    +  +++++ Y    ++   
Sbjct: 233 ----------------------------------LGLDMDVSVSNTLLALYAETSRLAEC 258

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGG-FSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           +++F  M +RD VSW  +I   +  G   S+A+E+F +M   G  P+ VT + +L     
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L       ++H   ++  V   N  +  A++  Y K G ++    +F ++ +    VS +
Sbjct: 319 LSTSKLSHQIHALILKYNVKDDNA-IENALLACYGKSGEMENCEEIFSRMSERRDEVS-W 376

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           NS+ISG   + L   ++ +   M   G + D  TF TVL AC+    +E G +     + 
Sbjct: 377 NSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIR 436

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDANSVI 518
             ++  +     +VD+ ++ GR+D A      MP    Y  NS+I
Sbjct: 437 ACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMI 481



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 176/396 (44%), Gaps = 38/396 (9%)

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H +++K G + DLF+ N LI+ Y   G   +A K+F+    R+ V++  LI+GY Q   P
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTE-LNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
             A  + ++M      P+ F F +   AC E +   R G+Q H    +  G   + + + 
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRT-GLNDAKVAVG 141

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             +INMYAKCG ++ A  VF  M + K + +W+SMI+G                +DQ   
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLM-VDKDSVSWNSMITG----------------LDQNKC 184

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                          F  A++ +  M   G+ P    +++ L +C  LG +  G++ H +
Sbjct: 185 ---------------FEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGE 229

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            I+ +    ++ ++  ++ +YA+   +     VF  + +  +    +N++I  LA  G  
Sbjct: 230 GIK-LGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVS--WNTVIGALADSGAS 286

Query: 431 -ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
              +I VF EM   G  P+ VTF+ +L   S     +   Q    +L Y +K        
Sbjct: 287 VSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENA 346

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           ++    + G ++    +   M    + V W ++++ 
Sbjct: 347 LLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG 382


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 398/736 (54%), Gaps = 81/736 (11%)

Query: 17  SCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           S KS  QA Q+H Q++    +   + S L+S ++     N L  S  LF+ I  P    W
Sbjct: 18  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHI---NLLHDSLRLFNTIHFPPALAW 74

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +++R Y+    P ++L  +  ML+ G+  P++  FP VL SCA L     G  +H +II
Sbjct: 75  KSVIRCYTSHGLPHQSLGSFIGMLASGLY-PDHNVFPSVLKSCALLMDLNLGESLHGYII 133

Query: 137 KFGLEFDLFIRNALIHFYSIFGYI--------------------------------NNAH 164
           + GL+FDL+  NAL++ YS   ++                                ++  
Sbjct: 134 RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVR 193

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           K+FE    +DLVS+NT+I G A+       L + R+M  + ++PD+FT  ++     E  
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENV 253

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           D   GK+ H    +    + +++ + +++I+MYAKC                        
Sbjct: 254 DISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCT----------------------- 288

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                    ++  + ++F  + +RD +SW ++I+G  Q G F + L  F +M    I P 
Sbjct: 289 ---------RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPK 339

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
             +  +++ AC  L  L  GK+LH  YI    F  NIF+ ++++DMYAKCG+I TA  +F
Sbjct: 340 SYSFSSIMPACAHLTTLHLGKQLHG-YITRNGFDENIFIASSLVDMYAKCGNIRTAKQIF 398

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++   L+ +  + ++I G A HG    +I +F +ME  G+K        VL ACSHGGL
Sbjct: 399 DRM--RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGL 449

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+E  ++F SM  ++GI P +EHY  + DLL R GRL+EAY  I  M       IW  LL
Sbjct: 450 VDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLL 509

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
           +ACR+H+N  + E    ++L+++P++   Y+LL+N+ +   RW+EA + R  M   GI+K
Sbjct: 510 SACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRK 569

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            P  S+IE    ++ F+A  +SHP  ++I   ++ +   ++  GYVP+T +V  DV+EE+
Sbjct: 570 TPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQ 629

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           K+ +V  HSE+LA+ FG+IN+ +  TIR+TKNLR+C DCH A K +S+I  REI+VRD  
Sbjct: 630 KKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNS 689

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G CSC D+W
Sbjct: 690 RFHHFKNGTCSCGDYW 705



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 159/337 (47%), Gaps = 16/337 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+L L+     + +  +IHG  +  GL+  I  +S LI  +A   C       R+ F+ 
Sbjct: 243 SSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA--KCTRVADSCRV-FTL 299

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   WN+++ G  ++    E L  +  ML   I  P +++F  ++ +CA L++   
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI-KPKSYSFSSIMPACAHLTTLHL 358

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H +I + G + ++FI ++L+  Y+  G I  A ++F+    RD+VS+  +I G A 
Sbjct: 359 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCAL 418

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   A+ LF +M+   I+       A+ +AC+         ++   + ++ G +   +
Sbjct: 419 HGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFG-IAPGV 470

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---Q 304
               AV ++  + G +  A      M +  + + W++++S       I+ A ++ +   +
Sbjct: 471 EHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILE 530

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +D  +  ++  + + YS    + +A +    M  +GI
Sbjct: 531 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGI 567


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/591 (38%), Positives = 354/591 (59%), Gaps = 38/591 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+H  +   G+  DL + N L++  +    +  AH +F     RD VS++ +I G+ +  
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           +       FR++  +  +PD F+   +  AC +     +G+  H+ V KN G    N + 
Sbjct: 81  DYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKN-GLHLDNFVC 139

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            T +++MYAKCG+                                I+ A+QLFD+M ++D
Sbjct: 140 ST-LVDMYAKCGM--------------------------------IDNAKQLFDRMPKKD 166

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           LV+ T MI+GY++ G  +++  LF +M   G  PD+V MV ++ AC  LGA++  + +H 
Sbjct: 167 LVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHD 226

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            Y+    +  ++ L TA+IDMYAKCGSID++  +F ++ +  K V  ++++I     HG 
Sbjct: 227 -YVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQ--KNVISWSAMIGAYGYHGQ 283

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYG 488
           G  ++ +F  M   G+ P+ +TF+++L ACSH GLV++G Q F  M ++YG++P ++HY 
Sbjct: 284 GREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYT 343

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R GRLD+A  LI++M  + +  IW A L ACR+HR   + E A + LL L+  
Sbjct: 344 CMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQ 403

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +  HY+LLSN+ A   RW++  ++R LM    ++K PG+++IE +  ++RF A   SH +
Sbjct: 404 NPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLR 463

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
           + EI  MLK ++ KL+SAGYVP+T  V+ DVDEE K  ++  HSEKLA+AFGLI +    
Sbjct: 464 SNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGT 523

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IRITKNLR+CGDCH   KL+S I +R+I+VRDA RFH FK+G CSC D+W
Sbjct: 524 PIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 189/396 (47%), Gaps = 41/396 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
            ++ L  C+++ Q  Q+H Q+  +G+ H +  +  + +         L  + +LF++++ 
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAK--HKDLVTAHLLFNKMEE 63

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            +   W+ ++ G+ ++   +     +  ++  G   P+NF+ PFV+ +C        G  
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAG-SKPDNFSLPFVIKACRDTMGLIMGRL 122

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH  ++K GL  D F+ + L+  Y+  G I+NA ++F+    +DLV+   +I GYA+  +
Sbjct: 123 IHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGK 182

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  +  LF +M+     PD    V + +AC +L      +  H  V      +  ++ L 
Sbjct: 183 PNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELG 240

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           TA+I+MYAKCG ++ +  +F  M   K+  +WS+MI  Y                     
Sbjct: 241 TAMIDMYAKCGSIDSSREIFDRME-QKNVISWSAMIGAY--------------------- 278

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                   GY   G   +ALELF  M + GI P+ +T +++L AC   G +D G +L   
Sbjct: 279 --------GYHGQG--REALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFS- 327

Query: 371 YIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVF 404
            + +V +G   ++   T ++D+  + G +D AL + 
Sbjct: 328 -LMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLI 362


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/567 (41%), Positives = 352/567 (62%), Gaps = 11/567 (1%)

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           Y+  G ++ +  +F  +    +  +  +I+G+A       AL  + +M    ++P+AFTF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
            ++   C    +P  GK  H+   K LG   S++ ++T ++++YA+ G +  A+++F TM
Sbjct: 79  SSILKLCPI--EP--GKALHSQAVK-LG-FDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
              KS  + ++M++ Y + G+++ AR LFD M++RD V W  MI GY+Q G  ++AL LF
Sbjct: 133 P-EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 191

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
            +M      P+EVT+++VL AC  LGAL+ G+ +H  YIEN     N+ + TA++DMY+K
Sbjct: 192 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS-YIENNGIQFNVHVGTALVDMYSK 250

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CGS++ A  VF KI    K V  +NS+I G A  G  + ++ +F+ M  MGL P  +TF+
Sbjct: 251 CGSLEDARLVFDKIDD--KDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFI 308

Query: 454 TVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            +L AC H G V EG   F  M + YGI+P++EHYGCMV+LL R G +++AY L+++M  
Sbjct: 309 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 368

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           + + V+W  LL ACRLH    +GE   + L+D    +   Y+LLSN+ A    W+   ++
Sbjct: 369 EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARL 428

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           R +M DSG++K PG S IE N  +H FLA   +HP+ KEI +ML+++   LKS GY P T
Sbjct: 429 RTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQT 488

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
             V+ D+ E EKE  +  HSEKLA+AFGLIN++   TI+I KNLR+C DCH   KL+S+I
Sbjct: 489 DIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKI 548

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
             R+I+VRD  RFH F  G+CSC D+W
Sbjct: 549 TGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 194/448 (43%), Gaps = 106/448 (23%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           S  LF +  NP++F W  ++ G++     ++AL  Y  ML++G V PN FTF  +L  C 
Sbjct: 28  SVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG-VEPNAFTFSSILKLCP 86

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS----------IF------------- 157
                + G  +H   +K G + DL++R  L+  Y+          +F             
Sbjct: 87  ----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTA 142

Query: 158 --------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
                   G ++ A  +F+G   RD V +N +I+GY Q   P  AL LFR+M  +  +P+
Sbjct: 143 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 202

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T +++ SAC +L     G+  H+ +  N   +  N+ + TA+++MY+KCG +  A  V
Sbjct: 203 EVTVLSVLSACGQLGALESGRWVHSYIENN--GIQFNVHVGTALVDMYSKCGSLEDARLV 260

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  +   K   AW+SMI GY                           + G+SQ     +A
Sbjct: 261 FDKID-DKDVVAWNSMIVGYA--------------------------MXGFSQ-----EA 288

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           L+LF  M  +G+HP  +T + +L AC   G +  G  +  +  +       I     +++
Sbjct: 289 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 348

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           +  + G ++ A    Y++ KN                                M ++PD 
Sbjct: 349 LLGRAGHVEQA----YELVKN--------------------------------MNIEPDP 372

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLN 477
           V + T+L AC   G +  G++  E +++
Sbjct: 373 VLWGTLLGACRLHGKIALGEKIVELLVD 400



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 147/308 (47%), Gaps = 8/308 (2%)

Query: 40  ISSSQLISFFALSGC--KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           +    L+S  A+  C  K+G L  +R+LF  ++  +   WN ++ GY+++  P EALVL+
Sbjct: 132 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 191

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             ML K    PN  T   VL++C +L + +SG  +H +I   G++F++ +  AL+  YS 
Sbjct: 192 RRML-KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 250

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VF+    +D+V++N++I GYA       AL LF+ M    + P   TF+ +
Sbjct: 251 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGI 310

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC        G      +    G +   +     ++N+  + G +  A  +   M + 
Sbjct: 311 LSACGHSGWVTEGWDIFNKMKDEYG-IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE 369

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV---SWTAMISGYSQVGGFSQALELF 333
                W +++      GKI    ++ + +  ++L    ++  + + Y+ VG +     L 
Sbjct: 370 PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLR 429

Query: 334 GKMESLGI 341
             M+  G+
Sbjct: 430 TMMKDSGV 437


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 346/607 (57%), Gaps = 43/607 (7%)

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           L+  Y+  G       +F+    +++V +N +I  Y        AL +F+ M +    PD
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            +T+  +  AC+   +  +G Q H  V K LG +  N+ +   +++MY KC  ++ A RV
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVK-LG-LDMNLYIGNGLVSMYGKCKWLDAARRV 194

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERA------------------------------- 298
              M   +   +W+SM++GY + G+   A                               
Sbjct: 195 LDEMP-GRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSC 253

Query: 299 ------RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                 + +F ++ ++ L+SW  MI+ Y      ++A++L+ +M+  G+ PD V++ +VL
Sbjct: 254 DNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVL 313

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  L A   G+R+H+ Y+E      N+ L  A+IDMYAKCG +  A +VF ++    +
Sbjct: 314 PACGDLSAAVLGRRIHE-YVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQM--MFR 370

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + S+IS     G G+ ++A+F++M   G  PD + FV+VL ACSH GLV+EG+  F
Sbjct: 371 DVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCF 430

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
             M  YGI P +EHY CMVDLL R G++DEAY L + MP + N  +W +LL+ACR++ + 
Sbjct: 431 NLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSM 490

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
            I  +A   L  L P+   +YVLLSN+ A+  RW++   VR +M+  GI+K PG S +E 
Sbjct: 491 NIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEI 550

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           N  ++ FLA  +SH Q+KEI   L  +  ++K  GY+P T   + DV+EE+KE  ++ HS
Sbjct: 551 NDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHS 610

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+ F ++N++   TIRITKN+R+CGDCH+A KL+S+I  REI++RD  RFH F+ G 
Sbjct: 611 EKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGV 670

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 671 CSCGDYW 677



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 210/434 (48%), Gaps = 40/434 (9%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           + +L +    K+LK+   +H +I+     H   S  +    A + C    + +R +F +I
Sbjct: 42  NKILDVNPDAKTLKK---LHSKILIDQNLHPNPSLGIKLMRAYAACGEPCY-TRHIFDEI 97

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + N+  +N ++R Y  +   Q+AL+++ +M ++G   P+N+T+P VL +C+   +   G
Sbjct: 98  TDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFY-PDNYTYPCVLKACSVSGNLWVG 156

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH  ++K GL+ +L+I N L+  Y    +++ A +V +    RD+VS+N+++ GYAQ 
Sbjct: 157 LQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQN 216

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI---------GKQFHAVVYKN 239
                AL L R+M+D  ++PDA T  ++  A T  +   +          K+   + +  
Sbjct: 217 GRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNV 276

Query: 240 LGCVGSNMLLKTAVINMYAK-------------------CGLMNMA---ERVFSTMGMSK 277
           +  V  N  +    +++Y +                   CG ++ A    R+   +   K
Sbjct: 277 MIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKK 336

Query: 278 ---STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
              +    +++I  Y + G ++ AR +FDQM  RD+VSWT+MIS Y   G    A+ LF 
Sbjct: 337 LRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFK 396

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           KM   G  PD +  V+VL AC   G +D G+       E  +    I     ++D+  + 
Sbjct: 397 KMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGI-TPGIEHYNCMVDLLGRA 455

Query: 395 GSIDTALSVFYKIP 408
           G ID A  +  ++P
Sbjct: 456 GKIDEAYHLTRQMP 469



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 10/240 (4%)

Query: 52  SGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT 111
           + C N L+  + +F ++   ++  WN ++  Y  +  P EA+ LY  M   G V P+  +
Sbjct: 251 TSCDNVLY-VKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHG-VEPDAVS 308

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
              VL +C  LS+   G +IH ++ +  L  +L + NALI  Y+  G +  A  VF+  +
Sbjct: 309 ISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMM 368

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRI 228
            RD+VS+ ++I+ Y    +   A+ LF+KM+DS   PD   FV++ +AC+    +++ R 
Sbjct: 369 FRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRY 428

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
                A      G    N +     +++  + G ++ A  +   M M  +   W S++S 
Sbjct: 429 CFNLMAEYGITPGIEHYNCM-----VDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 5/194 (2%)

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K+LH + + +     N  L   ++  YA CG       +F +I    K V  FN +I   
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITD--KNVVFFNVMIRSY 112

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
             +GL + ++ VF+ M   G  PD  T+  VL ACS  G +  G Q   +++  G+   +
Sbjct: 113 VNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNL 172

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA--ACRLHRNAKIGEIAGQKL 542
                +V +  +   LD A  ++  MP   + V W +++A  A     N  +      + 
Sbjct: 173 YIGNGLVSMYGKCKWLDAARRVLDEMP-GRDMVSWNSMVAGYAQNGRFNDALKLCREMED 231

Query: 543 LDLEPDHGAHYVLL 556
           L L+PD G    LL
Sbjct: 232 LKLKPDAGTMGSLL 245


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/725 (35%), Positives = 402/725 (55%), Gaps = 56/725 (7%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRIL 64
           ++  S  A + SCK       IH +I  +GL    SS+ L +   L   K+G L  +R +
Sbjct: 42  IQSDSFAAAIRSCKDSNSVSIIHQKITRAGLG---SSAYLNNLLVLMLAKHGSLCEARSI 98

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F  I + NIF WN ++  Y+    P  AL L+  M     V P   TF   L++C+ L  
Sbjct: 99  FDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKM----DVPPTAMTFATALSACSSLGD 154

Query: 125 FKSGCQIHCHI-IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            + G +IH  I    G+   + +  A+   Y+  G ++ A  VF+   A+++VS+N LI 
Sbjct: 155 LQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIA 214

Query: 184 GYAQVKEP-CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLG 241
            YAQ       AL LF KM +  ++P   TFV +  AC   ND    ++ HA +V   L 
Sbjct: 215 AYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGAC---NDVTSLEKIHARIVETGLQ 271

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
               ++ ++ A++NMYAKCG + +A                                R +
Sbjct: 272 FDVRDVGVQNALLNMYAKCGSLEVA--------------------------------RDI 299

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F +M +RD VS   MI+ ++Q G   +++++F +M+  G+  D+ T  +V+ AC   GAL
Sbjct: 300 FRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGAL 359

Query: 362 DFGKRLHQQYIENVVFGR-----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
           +FGKR+H++ +E  V GR     N+ + TA++ MY KCG+++ A +VF  +    K    
Sbjct: 360 EFGKRIHKRVVEP-VLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAM--TTKNSVS 416

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N++++  A  G G+ + A  R     G++ D  +F++VL ACSH G++E     F+ ML
Sbjct: 417 WNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLML 476

Query: 477 -NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
            ++ + P  E+Y CMVDLLAR GRL +A  L+ SMP+  +++ WR LL  CR+  + +  
Sbjct: 477 SDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENA 536

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK-PPGWSYIEHNG 594
             A ++  +LEP + A Y LLS++ + T + +E  ++R  M + G++K  PG S IE +G
Sbjct: 537 ASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHG 596

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F+A   SHPQ  +I   L  + ++LK AG+VP+T  VV D+  E+KE +++ HSEK
Sbjct: 597 RVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEK 656

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFGLI+++S   + + KNLR+C DCH A KL+S++  R I VRDA RFH F+ G CS
Sbjct: 657 LAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCS 716

Query: 715 CMDFW 719
           C D+W
Sbjct: 717 CGDYW 721


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 358/616 (58%), Gaps = 39/616 (6%)

Query: 106 SPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           +P++ T P  L S +RL    ++G Q+H   +K     +  +  +L+  Y+  G ++ A 
Sbjct: 67  NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 126

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           +VF+       V +  LI  Y    +   A+ + R    + ++PD+FT V + +AC  + 
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           D   G+       +    V  ++ + TA +++Y KCG                       
Sbjct: 187 DLATGETVWRAAEQE--GVAQSVFVATAAVDLYVKCG----------------------- 221

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                    ++ +AR++FD+M  +D V+W AM+ GY+  G   +AL+LF  M++ G+ PD
Sbjct: 222 ---------EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPD 272

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
              +   L AC  LGALD G++   + ++   F  N  L TA+IDMYAKCGS   A  VF
Sbjct: 273 CYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 331

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++ K  K + ++N++I GL   G  + + A+  +ME  G+K +  TF+ +LC+C+H GL
Sbjct: 332 QQMRK--KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGL 389

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           +++G+++F +M   Y I P++EHYGCMVDLL+R G L EA+ L+  MP  AN+VI  ALL
Sbjct: 390 IQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALL 449

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
             C++HRN ++ E   ++L+ LEP +  +YV+LSN+ +   RWE+A ++R  M   G++K
Sbjct: 450 GGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK 509

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            P  S++E  G +H F    KSHP + +I   L ++ +++K+ GY P T  V+FDV++EE
Sbjct: 510 VPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEE 569

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  + +HSEKLA+AF L+ +   ETIR+TKNLR+C DCH A KL+S I  REI+VRD  
Sbjct: 570 KEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNN 629

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH F+ G+CSC D+W
Sbjct: 630 RFHCFRDGSCSCNDYW 645



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 192/425 (45%), Gaps = 42/425 (9%)

Query: 21  LKQALQIHGQIVH--SGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           L+   Q+H + +   S  N H+ +S L+S +A  G    L R++ +F ++ +P+   W  
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTS-LLSLYAKCGL---LHRAQRVFDEMPHPSTVPWTA 142

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L+  Y  +   +EA+ +  +  + G+  P++FT   VL +CAR++   +G  +     + 
Sbjct: 143 LITAYMDAGDLREAVHVARNAFANGM-RPDSFTAVRVLTACARIADLATGETVWRAAEQE 201

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G+   +F+  A +  Y   G +  A +VF+    +D V++  ++ GYA    P  AL LF
Sbjct: 202 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             MQ   ++PD +      SACT L    +G+Q  A+   +      N +L TA+I+MYA
Sbjct: 262 LAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ--AIRMVDWDEFLDNPVLGTALIDMYA 319

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG                +  AW                  +F QM ++D++ W AMI 
Sbjct: 320 KCG---------------STVEAWV-----------------VFQQMRKKDIIVWNAMIL 347

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G    G    A  L G+ME  G+  ++ T + +L +C   G +  G+R      +     
Sbjct: 348 GLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 407

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             I     ++D+ ++ G +  A  +   +P     V +  +++ G   H   E +  V +
Sbjct: 408 PRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV-ILGALLGGCKIHRNTELAEHVLK 466

Query: 439 EMELM 443
           ++ L+
Sbjct: 467 QLILL 471



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 138/294 (46%), Gaps = 19/294 (6%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           + ++R +F ++ + +   W  ++ GY+ +  P+EAL L+ +M ++G+  P+ +     L+
Sbjct: 223 MAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KPDCYAVAGALS 281

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRN-----ALIHFYSIFGYINNAHKVFEGSLA 172
           +C RL +   G Q     I+  +++D F+ N     ALI  Y+  G    A  VF+    
Sbjct: 282 ACTRLGALDLGRQA----IRM-VDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRK 336

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           +D++ +N +I G         A  L  +M+ S ++ +  TF+ +  +CT     + G+++
Sbjct: 337 KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRY 396

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
              + K L  +   +     ++++ ++ GL+  A ++   M M  +     +++ G    
Sbjct: 397 FHNMTK-LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIH 455

Query: 293 GKIERARQLFDQMDQRDLVSWTA----MISG-YSQVGGFSQALELFGKMESLGI 341
              E A  +  Q+    L  W +    M+S  YS  G +  A +L   M++ G+
Sbjct: 456 RNTELAEHVLKQLIL--LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGV 507



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 327 SQALELFG-KMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLT 384
           S AL L   ++  L  +P  +T+   L++   L   L  G++LH + ++ +    N  + 
Sbjct: 51  SSALHLHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLK-LPSHTNPHVL 109

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           T+++ +YAKCG +  A  VF ++P    +   + ++I+     G    ++ V R     G
Sbjct: 110 TSLLSLYAKCGLLHRAQRVFDEMPH--PSTVPWTALITAYMDAGDLREAVHVARNAFANG 167

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           ++PD  T V VL AC+    +  G+  + +    G+   +      VDL  + G + +A 
Sbjct: 168 MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 505 GLIQSMPYDANSVIWRALL 523
            +   M +  ++V W A++
Sbjct: 228 EVFDKMRHK-DAVAWGAMV 245


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/596 (39%), Positives = 366/596 (61%), Gaps = 16/596 (2%)

Query: 130 QIHCHIIKFGLEFD--LFIRNALIH-FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           QIH  I++  L       + N  +H  Y+  G I ++  +F  ++  DL  +   IN  +
Sbjct: 47  QIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 106

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  A  L+ ++  S I P+ FTF ++  +C+     + GK  H  V K  G +G +
Sbjct: 107 INGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLK-FG-LGID 160

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             + T ++++YAK G +  A++VF  M   +S  + ++MI+ Y ++G +E AR LFD M 
Sbjct: 161 PYVATGLVDVYAKGGDVVSAQKVFDRMP-ERSLVSSTAMITCYAKQGNVEAARALFDSMC 219

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGK 365
           +RD+VSW  MI GY+Q G  + AL LF K+ + G   PDE+T+VA L AC  +GAL+ G+
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H  ++++     N+ + T +IDMY+KCGS++ A+ VF   P+  K +  +N++I+G A
Sbjct: 280 WIHV-FVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR--KDIVAWNAMIAGYA 336

Query: 426 QHGLGETSIAVFREME-LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
            HG  + ++ +F EM+ + GL+P  +TF+  L AC+H GLV EG + FESM   YGIKP+
Sbjct: 337 MHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EHYGC+V LL R G+L  AY  I++M  DA+SV+W ++L +C+LH +  +G+   + L+
Sbjct: 397 IEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLI 456

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            L   +   YVLLSN+ A    +E   +VR LM + GI K PG S IE    +H F A  
Sbjct: 457 GLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGD 516

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           + H ++KEI  ML+ ++ ++KS GYVPNT  V+ D++E EKE  +  HSE+LA+A+GLI+
Sbjct: 517 REHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLIS 576

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++    ++I KNLR+C DCH   KL+S+I  R+I++RD  RFH F  G+CSC DFW
Sbjct: 577 TKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 205/452 (45%), Gaps = 74/452 (16%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFSQID 69
           L  L++  +S+ + LQIH  I+   L  H     L      +   +G  R S  LF Q  
Sbjct: 32  LAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTI 91

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +P++F++   +   S +    +A +LY  +LS  I +PN FTF  +L SC    S KSG 
Sbjct: 92  DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEI-NPNEFTFSSLLKSC----STKSGK 146

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF----EGSLA------------- 172
            IH H++KFGL  D ++   L+  Y+  G + +A KVF    E SL              
Sbjct: 147 LIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG 206

Query: 173 --------------RDLVSYNTLINGYAQVKEPCPALWLFRK-MQDSCIQPDAFTFVAMF 217
                         RD+VS+N +I+GYAQ   P  AL LF+K + +   +PD  T VA  
Sbjct: 207 NVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAAL 266

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SAC+++     G+  H  V  +   +  N+ + T +I+MY+KCG +  A  VF+     K
Sbjct: 267 SACSQIGALETGRWIHVFVKSSR--IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RK 323

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
              AW++MI+GY                           + GYSQ      AL LF +M+
Sbjct: 324 DIVAWNAMIAGYA--------------------------MHGYSQ-----DALRLFNEMQ 352

Query: 338 SL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
            + G+ P ++T +  L+AC   G ++ G R+ +   +       I     ++ +  + G 
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           +  A      +  +  +V L++S++     HG
Sbjct: 413 LKRAYETIKNMNMDADSV-LWSSVLGSCKLHG 443



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 134/299 (44%), Gaps = 46/299 (15%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +SS+ +I+ +A  G    +  +R LF  +   +I  WN ++ GY++   P +AL+L+  +
Sbjct: 193 VSSTAMITCYAKQG---NVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           L++G   P+  T    L++C+++ + ++G  IH  +    +  ++ +   LI  YS  G 
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPDAFTFVAMFS 218
           +  A  VF  +  +D+V++N +I GYA       AL LF +MQ  + +QP   TF+    
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQ 369

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM----G 274
           AC                                     A  GL+N   R+F +M    G
Sbjct: 370 AC-------------------------------------AHAGLVNEGIRIFESMGQEYG 392

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLVSWTAMISGYSQVGGFSQALEL 332
           +      +  ++S   R G+++RA +    M+   D V W++++      G F    E+
Sbjct: 393 IKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEI 451


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/663 (35%), Positives = 371/663 (55%), Gaps = 47/663 (7%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N   W  ++    +     EA+ L+  M+  G   P+ FT   V+++CA + 
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSG-YEPDRFTLSGVISACANME 285

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFY---SIFGYINNAHKVFEGSLARDLVSYNT 180
               G Q+H   I+ GL  D  +   LI+ Y   S+ G +  A K+F+  L  ++ S+  
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 181 LINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF--HAVVY 237
           +I GY Q       AL LFR M  + + P+ FTF +   AC  L   RIG+Q   HAV  
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV-- 403

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
                                              +G S      +S+IS Y R G+I+ 
Sbjct: 404 ----------------------------------KLGFSSVNCVANSLISMYARSGRIDD 429

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR+ FD + +++L+S+  +I  Y++     +ALELF ++E  G+     T  ++L     
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           +G +  G+++H + I++ +   N  +  A+I MY++CG+I++A  VF  +    + V  +
Sbjct: 490 IGTIGKGEQIHARVIKSGL-KLNQSVCNALISMYSRCGNIESAFQVFEDMED--RNVISW 546

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
            SII+G A+HG    ++ +F +M   G++P+ VT++ VL ACSH GLV EG + F+SM  
Sbjct: 547 TSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYT 606

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            +G+ P+MEHY CMVD+L R G L EA   I SMPY A++++WR  L ACR+H N ++G+
Sbjct: 607 EHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGK 666

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A + +++ EP   A Y+LLSN+ A T +W+E   +RK M +  + K  G S++E    +
Sbjct: 667 HAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKV 726

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H+F     SHP+  EI   L+++++K+K  GYVPN   V+ DV+EE+KE ++  HSEK+A
Sbjct: 727 HKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIA 786

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGLI++   + IR+ KNLRICGDCH A K +S    REI+VRDA RFH  K G CSC 
Sbjct: 787 VAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCN 846

Query: 717 DFW 719
           ++W
Sbjct: 847 EYW 849



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 181/336 (53%), Gaps = 13/336 (3%)

Query: 10  SLLALLESCKSLKQAL---QIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILF 65
           +L  ++ +C +++  L   Q+H Q +  GL         LI+ +A       +  +R +F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 66  SQIDNPNIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            QI + N+F W  ++ GY  +    +EAL L+  M+   ++ PN+FTF   L +CA L++
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-PNHFTFSSTLKACANLAA 391

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G Q+  H +K G      + N+LI  Y+  G I++A K F+    ++L+SYNT+I+ 
Sbjct: 392 LRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YA+      AL LF +++D  +   AFTF ++ S    +     G+Q HA V K+   + 
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS--GLK 509

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            N  +  A+I+MY++CG +  A +VF  M   ++  +W+S+I+G+ + G   +A +LF +
Sbjct: 510 LNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHK 568

Query: 305 MDQR----DLVSWTAMISGYSQVGGFSQALELFGKM 336
           M +     +LV++ A++S  S VG  ++  + F  M
Sbjct: 569 MLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSM 604



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 188/403 (46%), Gaps = 42/403 (10%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+  T+   L  C R  SF  G  +H  + +  L+ D    N+LI  YS  G    A  +
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 167 FE--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           F+  GS +RDL+S++ +++ +A       AL  F  M ++   P+ + F A   AC+   
Sbjct: 124 FQLMGS-SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAE 182

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
              +G      V K  G + S++ +   +I+M+ K                         
Sbjct: 183 FVSVGDSIFGFVVKT-GYLQSDVCVGCGLIDMFVK------------------------- 216

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                   G +  A ++F++M +R+ V+WT MI+   Q G   +A++LF +M   G  PD
Sbjct: 217 ------GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPD 270

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIEN-VVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
             T+  V+ AC  +  L  G++LH Q I + +   R +     +I+MYAKC S+D ++  
Sbjct: 271 RFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV--GCCLINMYAKC-SVDGSMCA 327

Query: 404 FYKIPKNLKTVSLFN--SIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             KI   +   ++F+  ++I+G  Q  G  E ++ +FR M L  + P+  TF + L AC+
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           +   +  G+Q F   +  G          ++ + AR GR+D+A
Sbjct: 388 NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 153/305 (50%), Gaps = 11/305 (3%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-----SQLISFFALSGCK 55
           +  ++  H +  + L++C +L  AL+I  Q+    +    SS     + LIS +A SG  
Sbjct: 369 LTHVIPNHFTFSSTLKACANLA-ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSG-- 425

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             +  +R  F  +   N+  +NT++  Y+++ + +EAL L+  +  +G+   + FTF  +
Sbjct: 426 -RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGM-GASAFTFASL 483

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L+  A + +   G QIH  +IK GL+ +  + NALI  YS  G I +A +VFE    R++
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNV 543

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +S+ ++I G+A+      AL LF KM +  ++P+  T++A+ SAC+ +     G +    
Sbjct: 544 ISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKS 603

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           +Y   G +   M     ++++  + G ++ A +  ++M        W + +      G +
Sbjct: 604 MYTEHGVI-PRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNL 662

Query: 296 ERARQ 300
           E  + 
Sbjct: 663 ELGKH 667



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A+     M   G HPD  T    L+ C+   + D G  +H++  ++ +   ++ L
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
            + +I +Y+KCG  + A S+F  +  +   +S +++++S  A + +G  ++  F +M   
Sbjct: 105 NS-LISLYSKCGQWEKATSIFQLMGSSRDLIS-WSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLARD-GRLD 501
           G  P+   F     ACS    V  G   F  ++  G        GC ++D+  +  G L 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            A+ + + MP + N+V W  ++   RL +    GE
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMIT--RLMQFGYAGE 254


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 261/783 (33%), Positives = 416/783 (53%), Gaps = 114/783 (14%)

Query: 7   EHSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H +L   L++C  L        +HG I  +G   ++   + L++ ++  G    L  + 
Sbjct: 148 DHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG---SLEDAS 204

Query: 63  ILFSQIDNP---NIFIWNTLMRGYSRSDSPQEALVLYTSML----------SKGIVSPNN 109
           ++F +I      ++  WN+++  + +  +P+ AL L++ M              I+S  N
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVN 264

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG 169
                +L +CA L +     +IH + I+ G   D F+ NALI  Y+  G +N+A KVF  
Sbjct: 265 -----ILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNV 319

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKM--------------------QDSCIQ-- 207
              +D+VS+N ++ GY Q      A  LF  M                    Q  C Q  
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEA 379

Query: 208 -------------PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS--------- 245
                        P++ T +++ SAC  L     G + HA   K   C+ S         
Sbjct: 380 LDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKK--CLLSLDNDFGGDG 437

Query: 246 ---NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              ++++  A+I+MY+KC       R F                         + AR +F
Sbjct: 438 DGEDLMVYNALIDMYSKC-------RSF-------------------------KAARSIF 465

Query: 303 DQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMES--LGIHPDEVTMVAVLRACVGL 358
           D +   +R++V+WT MI GY+Q G  + AL++F +M S    + P+  T+  +L AC  L
Sbjct: 466 DSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHL 525

Query: 359 GALDFGKRLHQQYIENVVFGRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
            AL  GK++H     +  +  ++ F+   +IDMY+KCG +DTA +VF  +PK    VS +
Sbjct: 526 AALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKR-NEVS-W 583

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
            S++SG   HG G+ ++ +F +M+  G  PD ++F+ +L ACSH G+V++G  +F+ M  
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR 643

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +Y +    EHY C++DLLAR GRLD+A+  IQ MP + ++VIW ALL+ACR+H N ++ E
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAE 703

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A  KL++++ ++   Y L+SN+ A   RW++  ++R+LM  SGI+K PG S+++     
Sbjct: 704 YALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGT 763

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
             F    +SHP + EI  +L+ +  ++K  GYVP T   + DVD+EEK  ++S HSEKLA
Sbjct: 764 ASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLA 823

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           LA+GL+ +     IRITKNLR+CGDCH AF  +S+I   EI+VRD+ RFH FK G+CSC 
Sbjct: 824 LAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCG 883

Query: 717 DFW 719
            +W
Sbjct: 884 GYW 886



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 161/572 (28%), Positives = 285/572 (49%), Gaps = 61/572 (10%)

Query: 13  ALLESCKSLKQALQIHGQIVHSG---------------LNHH-------ISSSQLISFFA 50
           +LL+ C+S+    QIH +I+  G               L  H       + +  + S+ A
Sbjct: 36  SLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLA 95

Query: 51  LSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
               K+ L    +L     +P ++ WN L+R + +      A+ +   ML  G   P++F
Sbjct: 96  CGATKDAL---SVLERVTPSPAVW-WNLLVREHIKEGHLDRAIGVSCRMLRAG-TKPDHF 150

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           T P+ L +C  L S+  G  +H  I   G E ++F+ NAL+  YS  G + +A  VF+  
Sbjct: 151 TLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEI 210

Query: 171 LAR---DLVSYNTLINGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSACT 221
             +   D++S+N+++  + +   P  AL LF +M      + +  + D  + V +  AC 
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACA 270

Query: 222 ELND-PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            L   P+I K+ H+   +N     ++  +  A+I+ YAKCG MN A +VF+ M   K   
Sbjct: 271 SLKALPQI-KEIHSYAIRN--GTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEF-KDVV 326

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKM 336
           +W++M++GYT+ G    A +LF+ M +     D+++W+A+I+GY+Q G   +AL+ F +M
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-----------RNIFLTT 385
              G  P+ VT++++L AC  LGAL  G  +H   ++  +              ++ +  
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM--ELM 443
           A+IDMY+KC S   A S+F  IP+  + V  +  +I G AQ+G    ++ +F EM  +  
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYG-CMVDLLARDGRLD 501
            + P+  T   +L AC+H   +  GKQ    +  ++  +P +     C++D+ ++ G +D
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            A  +  SMP   N V W ++++   +H   K
Sbjct: 567 TARNVFDSMP-KRNEVSWTSMMSGYGMHGRGK 597


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 396/713 (55%), Gaps = 43/713 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
            +SLL+   S  +L + +Q+H   + +G++  I     L+  +  S C + +  +   F  
Sbjct: 366  ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLY--SKCAD-VETAHKFFLT 422

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             +  NI +WN ++  Y + D+  ++  ++  M  +G++ PN FT+P +L +C  L +   
Sbjct: 423  TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYL 481

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            G QIH H+IK G + ++++ + LI  Y+ +G +  A ++       D+VS+  +I GY Q
Sbjct: 482  GEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQ 541

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                  AL LF +M+   IQ D   F +  SAC  +   R G+Q HA  Y      G+++
Sbjct: 542  HDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYA--AGFGADL 599

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
             +  A+I++YA+C                                G+I+ A   F+++  
Sbjct: 600  SINNALISLYARC--------------------------------GRIQEAYLAFEKIGD 627

Query: 308  RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            ++ +SW +++SG +Q G F +AL++F +M       +  T  + + A   L  +  G+++
Sbjct: 628  KNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQI 687

Query: 368  HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
            H   ++   +     ++ ++I +YAK GSI  A   F  + +  + V  +N++I+G +QH
Sbjct: 688  HSMVLK-TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE--RNVISWNAMITGYSQH 744

Query: 428  GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
            G G  ++ +F EM++ G+ P+ VTFV VL ACSH GLV+EG  +FESM   + + P+ EH
Sbjct: 745  GCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEH 804

Query: 487  YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
            Y C+VDLL R G+LD A   I+ MP  A+++IWR LL+AC +H+N +IGE A   LL+LE
Sbjct: 805  YVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELE 864

Query: 547  PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
            P+  A YVL+SN+ A + +W      RKLM D G++K PG S+IE    +H F A  K H
Sbjct: 865  PEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLH 924

Query: 607  PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            P T +I   +  +  +    GYV ++  ++ + ++ +K+ +   HSEKLA+AFGL++  +
Sbjct: 925  PLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGN 984

Query: 667  KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IR+ KNLR+C DCH   K +S+I  R I+VRDA RFH F  G CSC DFW
Sbjct: 985  NIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/529 (27%), Positives = 261/529 (49%), Gaps = 51/529 (9%)

Query: 8   HSSLLALLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRI 63
           + + L LLE C    SL + +++H +I  SG +   +    L+  +   G ++G  +   
Sbjct: 58  YQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVK--- 114

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F +  N ++F WN ++  +    S  +   L+  ML++GI +PN +TF  VL +C    
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI-TPNGYTFAGVLKACVGGD 173

Query: 124 -SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            +F    Q+H     +G +    + N LI  YS  GYI +A KVF     +D+V++  +I
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +G +Q      A+ LF  M  S I P  +   ++ SA T++    +G+Q H +V K    
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK--WG 291

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S   +   ++ +Y++   +  AER+FSTM  S+   +++S+ISG  ++G  +RA +LF
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQQGFSDRALELF 350

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
            +M QRD                               + PD +T+ ++L AC  +GAL 
Sbjct: 351 TKM-QRDC------------------------------LKPDCITVASLLSACASVGALH 379

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G +LH   I+      +I L  +++D+Y+KC  ++TA   F  +    + + L+N ++ 
Sbjct: 380 KGMQLHSHAIK-AGMSADIILEGSLLDLYSKCADVETAHKFF--LTTETENIVLWNVMLV 436

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
              Q      S  +FR+M++ G+ P+  T+ ++L  C+  G +  G+Q    ++  G   
Sbjct: 437 AYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF-- 494

Query: 483 QMEHYGC--MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           Q+  Y C  ++D+ A+ G+L  A  +++ +P D + V W A++A    H
Sbjct: 495 QLNVYVCSVLIDMYAKYGQLALALRILRRLPED-DVVSWTAMIAGYVQH 542



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 240/521 (46%), Gaps = 41/521 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SS+L+     +  +   Q+H  ++  G   H  +       AL      L  +  +FS +
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           ++ +   +N+L+ G  +      AL L+T M  +  + P+  T   +L++CA + +   G
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKM-QRDCLKPDCITVASLLSACASVGALHKG 381

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H H IK G+  D+ +  +L+  YS    +  AHK F  +   ++V +N ++  Y Q+
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQL 441

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                +  +FR+MQ   + P+ FT+ ++   CT L    +G+Q H  V K       N+ 
Sbjct: 442 DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT--GFQLNVY 499

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + + +I+MYAK G + +A R+   +       +W++MI+GY +      A QLF++M+ R
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          GI  D +   + + AC G+ AL  G+++H
Sbjct: 559 -------------------------------GIQFDNIGFASAISACAGIRALRQGQQIH 587

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            Q      FG ++ +  A+I +YA+CG I  A   F KI    K    +NS++SGLAQ G
Sbjct: 588 AQSYA-AGFGADLSINNALISLYARCGRIQEAYLAFEKIGD--KNNISWNSLVSGLAQSG 644

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
             E ++ VF  M     + +  T+ + + A +    +++G+Q    +L  G   + E   
Sbjct: 645 YFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSN 704

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            ++ L A+ G + +A+     M  + N + W A++     H
Sbjct: 705 SLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQH 744



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 192/422 (45%), Gaps = 39/422 (9%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  N   + ++L  C    S     ++HC I K G + +  + ++L+  Y   G  + A 
Sbjct: 54  VRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAV 113

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           KVF+ +  R + S+N +I+ +   K       LFR+M    I P+ +TF  +  AC   +
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 225 DP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
                 KQ H+  +       S+ L+   +I++Y+K G +  A++VF+ + M K    W 
Sbjct: 174 IAFNYVKQVHSRTFYY--GFDSSPLVANLLIDLYSKNGYIESAKKVFNCICM-KDIVTWV 230

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           +MISG ++ G  E                               +A+ LF  M +  I P
Sbjct: 231 AMISGLSQNGLEE-------------------------------EAILLFCDMHASEIFP 259

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
               + +VL A   +   + G++LH   I+   F    ++   ++ +Y++   + +A  +
Sbjct: 260 TPYVLSSVLSASTKIQLFELGEQLHCLVIK-WGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  +  N +    +NS+ISGL Q G  + ++ +F +M+   LKPD +T  ++L AC+  G
Sbjct: 319 FSTM--NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVG 376

Query: 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            + +G Q     +  G+   +   G ++DL ++   ++ A+    +   + N V+W  +L
Sbjct: 377 ALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVML 435

Query: 524 AA 525
            A
Sbjct: 436 VA 437



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 5/202 (2%)

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
           G S+ ++L   ME  G+  +    + +L  C+  G+L    RLH + I    F     L 
Sbjct: 38  GKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCR-ISKSGFDGEPLLI 96

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            +++D Y + G    A+ VF +   + ++V  +N +I              +FR M   G
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDE--NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG 154

Query: 445 LKPDGVTFVTVLCACSHGGLV-EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           + P+G TF  VL AC  G +     KQ       YG          ++DL +++G ++ A
Sbjct: 155 ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214

Query: 504 YGLIQSMPYDANSVIWRALLAA 525
             +   +    + V W A+++ 
Sbjct: 215 KKVFNCICMK-DIVTWVAMISG 235


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/613 (38%), Positives = 372/613 (60%), Gaps = 16/613 (2%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY---INNAHKVFEGSL 171
           VL+ C  L   +   QIH  +IK  L    F  + LI F S+ G    ++ A  VF    
Sbjct: 12  VLDKCKSLCELR---QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA---FTFVAMFSACTELNDPRI 228
             +   +  LI G++    P  +L L+ +M  SC+   +   F+  ++  AC +L     
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARML-SCLNYSSGVEFSIPSVLKACGKLLAFDE 127

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G+Q H  V K    +  +  +  +++ MY   G + +A RVF  M  ++   +W+SMI+G
Sbjct: 128 GRQVHGQVLKTH--LWFDPFVGNSMVRMYIDFGEIELARRVFDRMP-NRDVVSWNSMIAG 184

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y + G+IE A+++F+ M  +D+V+WT+MIS Y Q     +AL+LF +M SLG+ PD   +
Sbjct: 185 YLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAI 244

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V+VL A   LG ++ GK LH     N +   + F+ +A+IDMY+KCG I+ A  VF  I 
Sbjct: 245 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 304

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              + +  +NS+ISGLA HGL   ++ +F EME M ++P+ +TF+ +L  CSHGGLVEEG
Sbjct: 305 HR-RNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 363

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           + +FESM   Y I P+++HYGCM+DL  R GRL++A G+IQ+MP++A+ + W+A+L+A  
Sbjct: 364 QFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASM 423

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
            H + +IG+ A  + ++L PD  + YVLLSN+ A+  RW++  ++R +M   G++K  G 
Sbjct: 424 KHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 483

Query: 588 SYIEHNGTLHRFLASKK-SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
           S +  NG +H FL  K+     + ++   + ++  +LK  GY P+  QV+ D+++E KE+
Sbjct: 484 SSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKES 543

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
           +++ HSEK+A+AFGLI+      I I KNLR+C DCH   KL+S++Y R+I++RD  RFH
Sbjct: 544 LLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFH 603

Query: 707 LFKKGNCSCMDFW 719
            F+ G CSC ++W
Sbjct: 604 HFENGCCSCNEYW 616



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 237/474 (50%), Gaps = 74/474 (15%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           ++++L+ CKSL +  QIH Q++ + L NH  + S+LI+F +LSG   GL  +  +FS+I 
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +PN FI+  L++G+S + +P E+L+LY  MLS     S   F+ P VL +C +L +F  G
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY--- 185
            Q+H  ++K  L FD F+ N+++  Y  FG I  A +VF+    RD+VS+N++I GY   
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKA 188

Query: 186 --------------------------AQVKEPCP--ALWLFRKMQDSCIQPDAFTFVAMF 217
                                     A V+  CP  AL LFR+M    ++PD    V++ 
Sbjct: 189 GEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVL 248

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           SA  +L     GK  HA V  N   + S   + +A+I+MY+KCG +  A  VF ++   +
Sbjct: 249 SAIADLGFVEEGKWLHAYVSMNKIELSSG-FIGSALIDMYSKCGYIENAYHVFRSISHRR 307

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           +   W+SMISG    G    AR                            +AL++F +ME
Sbjct: 308 NIGDWNSMISGLAIHG---LAR----------------------------EALDIFVEME 336

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
            + I P+E+T + +L  C   G ++ G+   +   E       I     +ID++ + G +
Sbjct: 337 RMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRL 396

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREMELMGLKPD 448
           + AL V   +P     ++ + +I+S   +HG   +G++  A  R +E   L PD
Sbjct: 397 EDALGVIQNMPFEADLLA-WKAILSASMKHGHIEIGKS--AALRAIE---LAPD 444


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/661 (36%), Positives = 373/661 (56%), Gaps = 25/661 (3%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N + W+T++   S       A+ +Y     K I  P+       L  C R++
Sbjct: 281 FFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI--PSQTALLTGLARCGRIT 338

Query: 124 SFKSGCQIHCHIIKFGLEFDLFI--RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
             +         I F    D  +   NA+I  Y   G ++ A ++F+    R+ +S+  +
Sbjct: 339 EAR---------ILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGM 389

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I GYAQ      AL L + +  + + P   +  + F AC+ +     G+Q H++  K  G
Sbjct: 390 IAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVK-AG 448

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
           C   N  +  A+I+MY KC  M    +VF+ M + K T +W+S I+   +   +E AR +
Sbjct: 449 C-QFNSYVCNALISMYGKCRNMEYVRQVFNRMRV-KDTVSWNSFIAALVQNNMLEDARHI 506

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           FD M  RD+VSWT +IS Y+Q     +A+E F  M      P+   +  +L  C GLG+ 
Sbjct: 507 FDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSA 566

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF--NS 419
             G+++H   I++ +    + +  A++ MY KCG  D+     +K+  +++   +F  N+
Sbjct: 567 KLGQQIHTVAIKHGM-DSELIVANALMSMYFKCGCADS-----HKVFDSMEERDIFTWNT 620

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNY 478
            I+G AQHGLG  +I ++  ME +G+ P+ VTFV +L ACSH GLV+EG QFF+SM  +Y
Sbjct: 621 FITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDY 680

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G+ P +EHY CMVDLL R G +  A   I  MP + ++VIW ALL AC++H+NA+IG  A
Sbjct: 681 GLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRA 740

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +KL   EP +  +YV+LSN+ +    W E  ++RK+M   G+ K PG S+++    +H 
Sbjct: 741 AEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHS 800

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F+   K H + +EI+  L+D+   L+  GYVP+T  V+ D+DEE+KE+ + YHSEKLA+A
Sbjct: 801 FVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVA 860

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           +GL+ +     I+I KNLRICGDCH   K +S + +R+I +RD  RFH F+ G+CSC DF
Sbjct: 861 YGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDF 920

Query: 719 W 719
           W
Sbjct: 921 W 921



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 241/540 (44%), Gaps = 90/540 (16%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFS 66
           HS+ +  L     L++A ++   + H  +   I+ + +IS +    C +G+   +RILF 
Sbjct: 36  HSARIRELARLGRLREAREVFDAMPHRDI---IAWNSMISAY----CNSGMLEDARILFD 88

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            I   N+     L+ GY+R     +A  ++  M  +  V+ N     +V N    ++   
Sbjct: 89  AISGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMAR-- 146

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
                   +       D+   N+++  Y     + +A  +F+    R+LV++  +I+GY 
Sbjct: 147 -------RLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYV 199

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           ++++      +FR M      PD   F ++ SA T L D  + +    +V K      S+
Sbjct: 200 RIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKT--GFESD 257

Query: 247 MLLKTAVINMYAK------------CGLMNMAERVFSTMGMS------------------ 276
           +++ T+++N+Y +             G++   E  +STM  +                  
Sbjct: 258 VVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDP 317

Query: 277 -KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            KS  + +++++G  R G+I  AR LF+Q+    +VSW AMI+GY Q G   +A ELF +
Sbjct: 318 VKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 336 M----------------------ESL---------GIHPDEVTMVAVLRACVGLGALDFG 364
           M                      E+L         G+ P   ++ +   AC  +GAL+ G
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG 437

Query: 365 KRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           +++H   ++    F  N ++  A+I MY KC +++    VF ++   +K    +NS I+ 
Sbjct: 438 RQVHSLAVKAGCQF--NSYVCNALISMYGKCRNMEYVRQVFNRM--RVKDTVSWNSFIAA 493

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           L Q+ + E +  +F  M    L  D V++ T++ A +     +E  +FF++ML+   KP 
Sbjct: 494 LVQNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPN 549



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 188/387 (48%), Gaps = 28/387 (7%)

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            D    +A I   +  G +  A +VF+    RD++++N++I+ Y               +
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSG----------ML 80

Query: 202 QDSCIQPDAFTFVAMFSACTELND-PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           +D+ I  DA +   + +A   L+   R+G+   A    + G    N +   A+++ Y + 
Sbjct: 81  EDARILFDAISGGNVRTATILLSGYARLGRVLDARRVFD-GMPERNTVAWNAMVSCYVQN 139

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G + MA R+F  M  S+   +W+SM++GY    ++  A  LF QM QR+LV+WT MISGY
Sbjct: 140 GDITMARRLFDAMP-SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGY 198

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            ++    +  ++F  M   G  PD+    +VL A  GL  L   + L +  +    F  +
Sbjct: 199 VRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVL-RPLVLKTGFESD 257

Query: 381 IFLTTAVIDMYAKCGS-IDTALSVFYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
           + + T+++++Y +  S +D A+  F   + +N  T   ++++I+ L+  G  + +IAV+ 
Sbjct: 258 VVIGTSILNVYTRDASALDIAIKFFDGMVERNEYT---WSTMIAALSHGGRIDAAIAVYG 314

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498
              +  + P     +T L  C   G + E +  FE + +    P +  +  M+    ++G
Sbjct: 315 RDPVKSI-PSQTALLTGLARC---GRITEARILFEQIPD----PIVVSWNAMITGYMQNG 366

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAA 525
            +DEA  L   MP+  N++ W  ++A 
Sbjct: 367 MVDEAKELFDRMPF-RNTISWAGMIAG 392



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 123/298 (41%), Gaps = 53/298 (17%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL++     S K   QIH   +  G++   I ++ L+S +   GC +    S  +F  ++
Sbjct: 556 LLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD----SHKVFDSME 611

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +IF WNT + G ++    +EA+ +Y  M S G++ PN  TF  +LN+C+       G 
Sbjct: 612 ERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVL-PNEVTFVGLLNACSHAGLVDEGW 670

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q    + +     D  +   L H+  +                 DL+     + G  +  
Sbjct: 671 QFFKSMSR-----DYGLTPLLEHYACMV----------------DLLGRTGDVQGAEKF- 708

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
                      + D  I+PD   + A+  AC    +  IG++    ++        N ++
Sbjct: 709 -----------IYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVM 757

Query: 250 KTAVINMYAKCGL-MNMAE--RVFSTMGMSKSTA-AW-------SSMISGYTREGKIE 296
            +   N+Y+  G+ + +AE  ++    G+SK    +W        S ++G  +  KIE
Sbjct: 758 LS---NIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIE 812


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/609 (39%), Positives = 356/609 (58%), Gaps = 39/609 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +  +L SC    + + G Q+H  I + G+ F+  +   L++ Y I   + NAH +F+   
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R+L  +N +I GYA       A+ L+ +M+D  + PD FTF  +  AC+ L+    GK+
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H  V ++   + S++ +  A+I+MYAKCG                              
Sbjct: 124 IHKDVIRS--GLESDVFVGAALIDMYAKCGC----------------------------- 152

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
              +E ARQ+FD++D+RD+V W +M++ YSQ G   ++L L   M   G+ P E T V  
Sbjct: 153 ---VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVIS 209

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           + A    G L  GK LH  Y     F  N  + TA++DMYAK GS++ A S+F  + +  
Sbjct: 210 IAASADNGLLPQGKELHG-YSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEE-- 266

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K V  +N++I+G A HG    ++ +F+EM+   L PD +TFV VL ACSHGGL+ EGK  
Sbjct: 267 KRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PDHITFVGVLAACSHGGLLNEGKMH 325

Query: 472 FESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F SM+ ++ I P ++HY CM+DLL   GRL+EAY LI  M  + ++ +W ALL +C++H 
Sbjct: 326 FRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG 385

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N ++GE+A +KL++LEPD G +YV+LSNM A+  +W+   ++R LM + G++K    S+I
Sbjct: 386 NVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWI 445

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E    +H FL+   SHP+++ I   LK     +K AGY P    V  DV+++EK  +VS 
Sbjct: 446 EVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSC 505

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSE+LA+AFGLI++ +   + I KNLRIC DCH+A K +S+I  REI +RD  R+H FK 
Sbjct: 506 HSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKD 565

Query: 711 GNCSCMDFW 719
           G CSC DFW
Sbjct: 566 GVCSCGDFW 574



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 241/482 (50%), Gaps = 57/482 (11%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +LL+SC   K+++   Q+H +I   G++ + + +++L++ + +    N L  + +LF +I
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCIC---NSLTNAHLLFDRI 62

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F+WN ++RGY+ +   + A+ LY  M   G+V P+ FTFPFVL +C+ LS+ + G
Sbjct: 63  SKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLV-PDKFTFPFVLKACSALSAMEEG 121

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  +I+ GLE D+F+  ALI  Y+  G + +A +VF+    RD+V +N+++  Y+Q 
Sbjct: 122 KKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQN 181

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +P  +L L R M  + ++P   TFV   +A  +      GK+ H   +++     SN  
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRH--GFESNDK 239

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +KTA+++MYAK G +N+A  +F  +   K   +W++MI+GY   G    A  LF +M  +
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELL-EEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK 298

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
            L                                PD +T V VL AC   G L+ GK   
Sbjct: 299 VL--------------------------------PDHITFVGVLAACSHGGLLNEGKMHF 326

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT---VSLFNSIISGLA 425
           +  I +      +   T +ID+   CG ++ A    YK+   ++      ++ +++    
Sbjct: 327 RSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA----YKLIMEMRVEPDAGVWGALLHSCK 382

Query: 426 QHG---LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
            HG   +GE ++    E+E      DG  +V +    +  G  +   +  + M+N G+K 
Sbjct: 383 IHGNVEMGELALEKLVELE----PDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKK 438

Query: 483 QM 484
            +
Sbjct: 439 SI 440


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 396/713 (55%), Gaps = 43/713 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
            +SLL+   S  +L + +Q+H   + +G++  I     L+  +  S C + +  +   F  
Sbjct: 366  ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLY--SKCAD-VETAHKFFLX 422

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             +  NI +WN ++  Y + D+  ++  ++  M  +G++ PN FT+P +L +C  L +   
Sbjct: 423  TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYL 481

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            G QIH H+IK G + ++++ + LI  Y+ +G +  A ++       D+VS+  +I GY Q
Sbjct: 482  GEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQ 541

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                  AL LF +M+   IQ D   F +  SAC  +   R G+Q HA  Y      G+++
Sbjct: 542  HDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYA--AGFGADL 599

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
             +  A+I++YA+C                                G+I+ A   F+++  
Sbjct: 600  SINNALISLYARC--------------------------------GRIQEAYLAFEKIGD 627

Query: 308  RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            ++ +SW +++SG +Q G F +AL++F +M       +  T  + + A   L  +  G+++
Sbjct: 628  KNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQI 687

Query: 368  HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
            H   ++   +     ++ ++I +YAK GSI  A   F  + +  + V  +N++I+G +QH
Sbjct: 688  HSMVLK-TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE--RNVISWNAMITGYSQH 744

Query: 428  GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
            G G  ++ +F EM++ G+ P+ VTFV VL ACSH GLV+EG  +FESM   + + P+ EH
Sbjct: 745  GCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEH 804

Query: 487  YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
            Y C+VDLL R G+LD A   I+ MP  A+++IWR LL+AC +H+N +IGE A   LL+LE
Sbjct: 805  YVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELE 864

Query: 547  PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
            P+  A YVL+SN+ A + +W      RKLM D G++K PG S+IE    +H F A  K H
Sbjct: 865  PEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLH 924

Query: 607  PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            P T +I   +  +  +    GYV ++  ++ + ++ +K+ +   HSEKLA+AFGL++  +
Sbjct: 925  PLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGN 984

Query: 667  KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               IR+ KNLR+C DCH   K +S+I  R I+VRDA RFH F  G CSC DFW
Sbjct: 985  NIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/529 (27%), Positives = 261/529 (49%), Gaps = 51/529 (9%)

Query: 8   HSSLLALLESC---KSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRI 63
           + + L LLE C    SL + +++H +I  SG +   +    L+  +   G ++G  +   
Sbjct: 58  YQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVK--- 114

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F +  N ++F WN ++  +    S  +   L+  ML++GI +PN +TF  VL +C    
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI-TPNGYTFAGVLKACVGGD 173

Query: 124 -SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            +F    Q+H     +G +    + N LI  YS  GYI +A KVF     +D+V++  +I
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +G +Q      A+ LF  M  S I P  +   ++ SA T++    +G+Q H +V K    
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK--WG 291

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S   +   ++ +Y++   +  AER+FSTM  S+   +++S+ISG  ++G  +RA +LF
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQQGFSDRALELF 350

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
            +M QRD                               + PD +T+ ++L AC  +GAL 
Sbjct: 351 TKM-QRDC------------------------------LKPDCITVASLLSACASVGALH 379

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G +LH   I+      +I L  +++D+Y+KC  ++TA   F  +    + + L+N ++ 
Sbjct: 380 KGMQLHSHAIK-AGMSADIILEGSLLDLYSKCADVETAHKFF--LXTETENIVLWNVMLV 436

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
              Q      S  +FR+M++ G+ P+  T+ ++L  C+  G +  G+Q    ++  G   
Sbjct: 437 AYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF-- 494

Query: 483 QMEHYGC--MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           Q+  Y C  ++D+ A+ G+L  A  +++ +P D + V W A++A    H
Sbjct: 495 QLNVYVCSVLIDMYAKYGQLALALRILRRLPED-DVVSWTAMIAGYVQH 542



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 240/521 (46%), Gaps = 41/521 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SS+L+     +  +   Q+H  ++  G   H  +       AL      L  +  +FS +
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           ++ +   +N+L+ G  +      AL L+T M  +  + P+  T   +L++CA + +   G
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKM-QRDCLKPDCITVASLLSACASVGALHKG 381

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H H IK G+  D+ +  +L+  YS    +  AHK F  +   ++V +N ++  Y Q+
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQL 441

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                +  +FR+MQ   + P+ FT+ ++   CT L    +G+Q H  V K       N+ 
Sbjct: 442 DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT--GFQLNVY 499

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + + +I+MYAK G + +A R+   +       +W++MI+GY +      A QLF++M+ R
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          GI  D +   + + AC G+ AL  G+++H
Sbjct: 559 -------------------------------GIQFDNIGFASAISACAGIRALRQGQQIH 587

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
            Q      FG ++ +  A+I +YA+CG I  A   F KI    K    +NS++SGLAQ G
Sbjct: 588 AQSYA-AGFGADLSINNALISLYARCGRIQEAYLAFEKIGD--KNNISWNSLVSGLAQSG 644

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
             E ++ VF  M     + +  T+ + + A +    +++G+Q    +L  G   + E   
Sbjct: 645 YFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSN 704

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            ++ L A+ G + +A+     M  + N + W A++     H
Sbjct: 705 SLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQH 744



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 191/422 (45%), Gaps = 39/422 (9%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V  N   + ++L  C    S     ++HC I K G + +  + ++L+  Y   G  + A 
Sbjct: 54  VRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAV 113

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           KVF+ +  R + S+N +I+ +   K       LFR+M    I P+ +TF  +  AC   +
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 225 DP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
                 KQ H+  +       S+ L+   +I++Y+K G +  A++VF+ + M K    W 
Sbjct: 174 IAFNYVKQVHSRTFYY--GFDSSPLVANLLIDLYSKNGYIESAKKVFNCICM-KDIVTWV 230

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           +MISG ++ G  E                               +A+ LF  M +  I P
Sbjct: 231 AMISGLSQNGLEE-------------------------------EAILLFCDMHASEIFP 259

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
               + +VL A   +   + G++LH   I+   F    ++   ++ +Y++   + +A  +
Sbjct: 260 TPYVLSSVLSASTKIQLFELGEQLHCLVIK-WGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  +  N +    +NS+ISGL Q G  + ++ +F +M+   LKPD +T  ++L AC+  G
Sbjct: 319 FSTM--NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVG 376

Query: 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            + +G Q     +  G+   +   G ++DL ++   ++ A+        + N V+W  +L
Sbjct: 377 ALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVML 435

Query: 524 AA 525
            A
Sbjct: 436 VA 437



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 5/202 (2%)

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
           G S+ ++L   ME  G+  +    + +L  C+  G+L    RLH + I    F     L 
Sbjct: 38  GKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCR-ISKSGFDGEPLLI 96

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            +++D Y + G    A+ VF +   + ++V  +N +I              +FR M   G
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDE--NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG 154

Query: 445 LKPDGVTFVTVLCACSHGGLV-EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           + P+G TF  VL AC  G +     KQ       YG          ++DL +++G ++ A
Sbjct: 155 ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214

Query: 504 YGLIQSMPYDANSVIWRALLAA 525
             +   +    + V W A+++ 
Sbjct: 215 KKVFNCICMK-DIVTWVAMISG 235


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/570 (40%), Positives = 347/570 (60%), Gaps = 46/570 (8%)

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLING--YAQV--KEPCPALWLFRKM-QDSCIQPD 209
           S FG  + A K+F       + +YN++I G  Y ++  KEP   + LF+ M       P+
Sbjct: 35  SPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEP---IHLFKDMVGKGYPNPN 91

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            FT   +  AC+ +     GKQ HA + ++                              
Sbjct: 92  TFTMAFVLKACSIIMALEEGKQIHAQILRS------------------------------ 121

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
               G S S    SS+++ Y++  +I  AR++FD++ +R+LV W+AM+SGY+++G  ++A
Sbjct: 122 ----GFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEA 177

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           L +F +M+ +GI PDEV++V VL AC  +GALD GK +H  YI+  +   ++ L TA+I+
Sbjct: 178 LIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHA-YIKKRMIHVDLELNTALIN 236

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MYAKCG I+ A  +F ++   +K    ++S+I GLA HGL E ++ VF  ME    KP+ 
Sbjct: 237 MYAKCGCIEKAREIFDEM--RVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNH 294

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           VTF+ +L AC+HGGLV +GK+++ SML  GI+P MEHYGCMVDLL R G +DEAY     
Sbjct: 295 VTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALI 354

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
           +P   + VIWR LL A   +R  +  E+   KLL+LEP    +Y++L+N+ A   + E+ 
Sbjct: 355 IP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKV 413

Query: 570 RQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYV 629
             VRK+M ++GI+  PG + IE +G +H F+    SHP+ +EI+  L+D+ +K+  +GY 
Sbjct: 414 SHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYK 473

Query: 630 PNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLL 689
           P    V+  V++EEKE V+  HSE+LA+A+GL+ +++  TIRI KNLR+CGDCH   K++
Sbjct: 474 PFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKII 533

Query: 690 SEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S+IY REI+VRD +RFH F  G CSC D+W
Sbjct: 534 SKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 199/391 (50%), Gaps = 48/391 (12%)

Query: 26  QIHGQIVHSGLNH--HISS-----SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           QIH +I    L H   ISS     S+++SF ALS   N  + +R +FSQI NP IF +N+
Sbjct: 6   QIHARI----LTHVPPISSVSFLISKILSFAALSPFGNFDY-ARKIFSQIPNPGIFAYNS 60

Query: 79  LMRGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           ++RG   +  P +E + L+  M+ KG  +PN FT  FVL +C+ + + + G QIH  I++
Sbjct: 61  VIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILR 120

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
            G     +++++L++FYS    I  A KVF+    R+LV ++ +++GYA++     AL +
Sbjct: 121 SGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIM 180

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           FR+MQ   I+PD  + V + SAC  +    IGK  HA + K +  +  ++ L TA+INMY
Sbjct: 181 FREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRM--IHVDLELNTALINMY 238

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
           AKCG +  A  +F  M + K + AWSSMI G    G  E                     
Sbjct: 239 AKCGCIEKAREIFDEMRV-KDSKAWSSMIVGLAIHGLAE--------------------- 276

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
                      AL +F +ME     P+ VT + +L AC   G +  GKR     +E +  
Sbjct: 277 ----------DALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLE-LGI 325

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             ++     ++D+  + G ID A      IP
Sbjct: 326 EPSMEHYGCMVDLLCRGGLIDEAYDFALIIP 356



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNH---HIS---SSQLISFFALSGCKNGLFR 60
           +  SL+ +L +C ++  AL I G+ VH+ +     H+    ++ LI+ +A  GC   + +
Sbjct: 192 DEVSLVGVLSAC-AMVGALDI-GKWVHAYIKKRMIHVDLELNTALINMYAKCGC---IEK 246

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++   +   W++++ G +     ++AL +++ M  +    PN+ TF  +L++CA
Sbjct: 247 AREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRM-EEAQAKPNHVTFIGILSACA 305

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                  G +    +++ G+E  +     ++      G I+ A+         D V + T
Sbjct: 306 HGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRT 365

Query: 181 LINGYAQ 187
           L+  Y +
Sbjct: 366 LLVAYTK 372


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/735 (34%), Positives = 402/735 (54%), Gaps = 83/735 (11%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           LK A  +   I    L    S + L+S ++  G    + R   +F  + N ++  WN+L+
Sbjct: 56  LKNARNVFDHIPQPNL---FSWNTLLSAYSKLGYLQDMQR---VFDSMPNHDVVSWNSLL 109

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
            GY+ +    E++ +Y  ML  G V+ N  TF  +L   +       G QIH  I KFG 
Sbjct: 110 SGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGY 169

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           +  LF+ + L+  Y+  G+IN+A+++FE    +++V YNT+I G  + +    A  LF  
Sbjct: 170 QSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDN 229

Query: 201 M--QDS-------------------------------CIQPDAFTFVAMFSACTELNDPR 227
           M  +DS                               C+  D FTF ++ +AC       
Sbjct: 230 MPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCM--DQFTFGSVLTACGGFLALD 287

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            GKQ HA + +       N+ + +A+++MY KC  +  AE VF                 
Sbjct: 288 EGKQIHAYIIRT--DYQDNIFVGSALLDMYCKCRNVKYAEAVFR---------------- 329

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
                           +M  ++++SWTAM+ GY Q G   +A+ +F  M+   IHPD+ T
Sbjct: 330 ----------------KMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFT 373

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIEN--VVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           + +V+ +C  L +L+ G + H Q + +  + F   + ++ A+I +Y KCGS++ A  +F+
Sbjct: 374 LGSVISSCANLASLEEGAQFHGQALASGLICF---VTVSNALITLYGKCGSLEHAHQLFH 430

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++   ++    + +++SG AQ G    +I++F  M   G+ PDGVTFV VL ACS  GLV
Sbjct: 431 EM--KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLV 488

Query: 466 EEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           E+G  +FE M+  + I P  +HY CM+DLL+R GRL+EA   I  MP+  +++ W  LL+
Sbjct: 489 EKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLS 548

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           +CRL+ N +IG+ A + L  LEP + A Y+LLS++ A   +W++  ++RK M + G++K 
Sbjct: 549 SCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKE 608

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           PG S+I++   +H F A  +S P + +I   L+ + +K+   GYVP+   V+ DV++ EK
Sbjct: 609 PGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEK 668

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
             ++++HSEKLA+AFGL+       IR+ KNLR+CGDCH A K +S I +REI+VRDA+R
Sbjct: 669 IKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVR 728

Query: 705 FHLFKKGNCSCMDFW 719
           FHLFK G CSC DFW
Sbjct: 729 FHLFKDGVCSCGDFW 743



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 226/425 (53%), Gaps = 12/425 (2%)

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           + + +P  F +  ++N+  +L   K+   +  HI     + +LF  N L+  YS  GY+ 
Sbjct: 33  RTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP----QPNLFSWNTLLSAYSKLGYLQ 88

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSAC 220
           +  +VF+     D+VS+N+L++GYA       ++ ++  M +D  +  +  TF  M    
Sbjct: 89  DMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILS 148

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
           +      +G+Q H  ++K  G   S + + + +++MYAK G +N A R+F  +   K+  
Sbjct: 149 SNRGFVDLGRQIHGQIFK-FG-YQSYLFVGSPLVDMYAKTGFINDANRIFEEIP-EKNIV 205

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            +++MI+G  R   I  A QLFD M ++D +SWT +I+G +Q G F +A++ F +M   G
Sbjct: 206 VYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEG 265

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
              D+ T  +VL AC G  ALD GK++H  YI    +  NIF+ +A++DMY KC ++  A
Sbjct: 266 FCMDQFTFGSVLTACGGFLALDEGKQIH-AYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
            +VF K+    K V  + +++ G  Q+G  E ++ +F +M+   + PD  T  +V+ +C+
Sbjct: 325 EAVFRKMRH--KNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCA 382

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           +   +EEG QF    L  G+   +     ++ L  + G L+ A+ L   M    + V W 
Sbjct: 383 NLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI-RDEVSWT 441

Query: 521 ALLAA 525
           AL++ 
Sbjct: 442 ALVSG 446



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 159/331 (48%), Gaps = 13/331 (3%)

Query: 20  SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           +L +  QIH  I+ +    +I   S L+  +    C+N  + +  +F ++ + N+  W  
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYC--KCRNVKY-AEAVFRKMRHKNVISWTA 341

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ GY ++   +EA+ ++  M  +  + P++FT   V++SCA L+S + G Q H   +  
Sbjct: 342 MLVGYGQNGYSEEAVRIFCDM-QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALAS 400

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL   + + NALI  Y   G + +AH++F     RD VS+  L++GYAQ  +    + LF
Sbjct: 401 GLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLF 460

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--LGCVGSNMLLKTAVINM 256
             M    I PD  TFV + SAC+       G  +   + K   +  +  +    T +I++
Sbjct: 461 ETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHY---TCMIDL 517

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLFDQMDQRDLVSW 313
            ++ G +  A+   + M  S     W++++S     G +E    A +   +++ ++  S+
Sbjct: 518 LSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASY 577

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPD 344
             + S Y+  G +    +L   M  +G+  +
Sbjct: 578 ILLSSIYAAKGKWDDVAKLRKGMREMGVKKE 608


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 356/601 (59%), Gaps = 9/601 (1%)

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A  S+ +   ++H  +++ GL+ D  +   L   Y+  G ++++  +   +     + Y 
Sbjct: 32  AACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYT 91

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           + I+ ++      P L L   M    + P A T  A   AC  L+   +G+  HA  +K 
Sbjct: 92  SAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLS---LGRALHAYAFK- 147

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           L   G + +  TA+++MYA+ G    A  +F  M       + ++M++ Y   G ++ AR
Sbjct: 148 LALSGDSYV-ATALLSMYARAGDAAAARALFDEMP-DPHVVSVTAMLTCYANMGALDDAR 205

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LFD + ++D + W AMI GY+Q G  ++AL+LF +M      PDEVT+V VL A   LG
Sbjct: 206 RLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLG 265

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            ++ GK LH     +     N+ + TA++DMY KCGS++ A++VF+ I    K + ++N+
Sbjct: 266 TVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGN--KDIVVWNA 323

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I+G A HG    ++ +F ++   GL P  +TF+ +L ACSH GLVEEG+ FF+SM + Y
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY 383

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           GI P++EHYGCMVDLL R G ++EA+ L+QS+    ++V+W +LLAACRLH+N  +G+  
Sbjct: 384 GIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRI 443

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
              L+     +   Y+LLSN+ A   +WEE  +VR +M  SGIQK PG S IE +  ++ 
Sbjct: 444 ADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYE 503

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F+A   SHP T EI  ML  M   +K  G+VP T  V+ D+DE  KE  ++ HSEKLA+A
Sbjct: 504 FVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVA 563

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           FGLI+SR   TI+I KNLR C DCH   KL+S+I  R+I+ RD  RFH F  G+C+C D+
Sbjct: 564 FGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDY 623

Query: 719 W 719
           W
Sbjct: 624 W 624



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 192/444 (43%), Gaps = 83/444 (18%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISF-----FALSGCKNGLFRSRILFSQ 67
           +LL +C + ++A ++H  +V  GL+    S + ++F     +A SG    L  S  L  +
Sbjct: 29  SLLAACSTARRASELHAAVVRKGLD----SDRAVAFRLQRAYAASG---RLDHSLTLLGR 81

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             +P    + + +  +S        L L + MLS+G++ P   T    L +C  LS    
Sbjct: 82  TKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLL-PTAHTLSASLPACRGLS---L 137

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSI------------------------------- 156
           G  +H +  K  L  D ++  AL+  Y+                                
Sbjct: 138 GRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYAN 197

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +++A ++F+G   +D + +N +I+GY Q  +P  AL LFR+M  S  +PD  T V +
Sbjct: 198 MGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLV 257

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SA  +L     GK  H+ V KN  CV  N+ + TA+++MY KCG +  A  VF  +G +
Sbjct: 258 LSAVAQLGTVESGKWLHSYV-KNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG-N 315

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K    W++MI+GY   G            D R                   +ALE+F ++
Sbjct: 316 KDIVVWNAMINGYAMHG------------DSR-------------------KALEMFVQL 344

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ P ++T + +L AC   G ++ G+   Q           I     ++D+  + G 
Sbjct: 345 RDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGL 404

Query: 397 IDTALSVFYKI---PKNLKTVSLF 417
           I+ A  +   +   P  +  VSL 
Sbjct: 405 IEEAFHLVQSLTITPDAVMWVSLL 428



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 149/311 (47%), Gaps = 9/311 (2%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           H +S + +++ +A  G    L  +R LF  +   +   WN ++ GY++   P EAL L+ 
Sbjct: 184 HVVSVTAMLTCYANMG---ALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFR 240

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSI 156
            ML +    P+  T   VL++ A+L + +SG  +H ++     ++ ++ +  AL+  Y  
Sbjct: 241 RML-RSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCK 299

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VF G   +D+V +N +INGYA   +   AL +F +++D  + P   TF+ +
Sbjct: 300 CGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGL 359

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            +AC+       G+ F   +    G +   +     ++++  + GL+  A  +  ++ ++
Sbjct: 360 LNACSHSGLVEEGRSFFQSMEHEYG-IDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTIT 418

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVGGFSQALELF 333
                W S+++       +   +++ D +    L +   +  + + Y+ VG + +   + 
Sbjct: 419 PDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVR 478

Query: 334 GKMESLGIHPD 344
             M++ GI  +
Sbjct: 479 SMMKASGIQKE 489


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/607 (37%), Positives = 348/607 (57%), Gaps = 43/607 (7%)

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           L+  Y+  G    A  +F+    +++V +N +I  Y        AL +++ M      PD
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            +T+  +  A +  +   +G Q H  V K +G +  N+ +   +I MY KC  +  A++V
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLK-IG-LDLNLYVGNGLIAMYGKCKSLKEAQQV 177

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERA------------------------------- 298
              +   +   +W+SM+S Y + G+   A                               
Sbjct: 178 LDEIP-CRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTS 236

Query: 299 ------RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                 +++F ++ ++ ++SW  MI+ Y       +A+ L+ +ME+ G+ PD V++V+VL
Sbjct: 237 DNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVL 296

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            A   L AL  G+R+H+ + E      N+ L  A+IDMYAKCG +  A +VF ++    +
Sbjct: 297 PAYGDLSALSLGRRVHK-FAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQM--QFR 353

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + SIIS   + G G  ++AVF EM   GL PD + FV+VL ACSH GL+++G+ +F
Sbjct: 354 DVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYF 413

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
             M   GI P++EH+ C+VDLL R G++DEAYG I+ MP + +  +W  LL+ACR++ N 
Sbjct: 414 NLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNM 473

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
            IG +A  KLL L P+H  +YVLLSN+ A+  RW +   +R +M+  GI+K PG S +E 
Sbjct: 474 NIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVEL 533

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           N  +H FLA   SHPQ+K+I   L  +  K+K  GY+P T   + DV+EE+KE  ++ HS
Sbjct: 534 NDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHS 593

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AF +IN++    IR+TKNLR+CGDCH+A KL+S+I  REI++RD  RFH F++G 
Sbjct: 594 EKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGC 653

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 654 CSCGDYW 660



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 205/431 (47%), Gaps = 41/431 (9%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSS--QLISFFALSGCKNGLFRSRILFSQIDNP 71
           +L+    +    ++HG++++        S   +L+  +A  G + GL  +R +F +I + 
Sbjct: 27  ILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACG-EPGL--ARHIFDEITDK 83

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N+  +N ++R Y  +   ++AL++Y +M ++G V P+ +T+P VL + +R  S   G QI
Sbjct: 84  NVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFV-PDMYTYPCVLKASSRSDSLWVGLQI 142

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  ++K GL+ +L++ N LI  Y     +  A +V +    RD+VS+N++++ YAQ    
Sbjct: 143 HGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRF 202

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI----------------------- 228
             AL L R+M+   ++P+  T  ++  A T      +                       
Sbjct: 203 NDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIA 262

Query: 229 ------GKQFHAVVYKNLGCVG--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK--- 277
                   +   V+Y  +   G   +++   +V+  Y     +++  RV       K   
Sbjct: 263 MYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLP 322

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           +    +++I  Y + G +  AR +F+QM  RD+VSWT++IS Y + G    A+ +F +M 
Sbjct: 323 NLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMR 382

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
           + G++PD +  V+VL AC   G LD G R +   +        +     V+D+  + G I
Sbjct: 383 NSGLNPDSIAFVSVLAACSHAGLLDDG-RYYFNLMAECGITPKLEHFACVVDLLGRAGKI 441

Query: 398 DTALSVFYKIP 408
           D A     ++P
Sbjct: 442 DEAYGFIRQMP 452



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K+LH + + +     N  +   ++ +YA CG    A  +F +I    K V  FN +I   
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITD--KNVVFFNVMIRSY 95

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
             + L + ++ V++ M   G  PD  T+  VL A S    +  G Q   ++L  G+   +
Sbjct: 96  VNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNL 155

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
                ++ +  +   L EA  ++  +P   + V W ++++
Sbjct: 156 YVGNGLIAMYGKCKSLKEAQQVLDEIPC-RDVVSWNSMVS 194


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 360/623 (57%), Gaps = 49/623 (7%)

Query: 104  IVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
            + +P++ T P  L S +RL    ++G Q+H   +K     +  +  +L+  Y+  G ++ 
Sbjct: 520  LPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHR 579

Query: 163  AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
            A +VF+       V +  LI  Y    +   A+ + R    + ++PD+FT V + +AC  
Sbjct: 580  AQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACAR 639

Query: 223  LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
            + D   G+       +    V  ++ + TA +++Y KCG                     
Sbjct: 640  IADLATGETVWRAAEQE--GVAQSVFVATAAVDLYVKCG--------------------- 676

Query: 283  SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       ++ +AR++FD+M  +D V+W AM+ GY+  G   +AL+LF  M++ G+ 
Sbjct: 677  -----------EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMK 725

Query: 343  PDEVTMVAVLRACVGLGALDFGKRL-----HQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
            PD   +   L AC  LGALD G++        ++++N V G      TA+IDMYAKCGS 
Sbjct: 726  PDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG------TALIDMYAKCGST 779

Query: 398  DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
              A  VF ++ K  K + ++N++I GL   G  + + A+  +ME  G+K +  TF+ +LC
Sbjct: 780  VEAWVVFQQMRK--KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLC 837

Query: 458  ACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
            +C+H GL+++G+++F +M   Y I P++EHYGCMVDLL+R G L EA+ L+  MP  AN+
Sbjct: 838  SCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA 897

Query: 517  VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            VI  ALL  C++HRN ++ E   ++L+ LEP +  +YV+LSN+ +   RWE+A ++R  M
Sbjct: 898  VILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDM 957

Query: 577  DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
               G++K P  S++E  G +H F    KSHP + +I   L ++ +++K+ GY P T  V+
Sbjct: 958  KAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 1017

Query: 637  FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            FDV++EEKE  + +HSEKLA+AF L+ +   ETIR+TKNLR+C DCH A KL+S I  RE
Sbjct: 1018 FDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHRE 1077

Query: 697  IMVRDAIRFHLFKKGNCSCMDFW 719
            I+VRD  RFH F+ G+CSC D+W
Sbjct: 1078 IIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 192/425 (45%), Gaps = 42/425 (9%)

Query: 21  LKQALQIHGQIVH--SGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           L+   Q+H + +   S  N H+ +S L+S +A  G    L R++ +F ++ +P+   W  
Sbjct: 542 LRAGEQLHARSLKLPSHTNPHVLTS-LLSLYAKCGL---LHRAQRVFDEMPHPSTVPWTA 597

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L+  Y  +   +EA+ +  +  + G+  P++FT   VL +CAR++   +G  +     + 
Sbjct: 598 LITAYMDAGDLREAVHVARNAFANGM-RPDSFTAVRVLTACARIADLATGETVWRAAEQE 656

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G+   +F+  A +  Y   G +  A +VF+    +D V++  ++ GYA    P  AL LF
Sbjct: 657 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 716

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             MQ   ++PD +      SACT L    +G+Q  A+   +      N +L TA+I+MYA
Sbjct: 717 LAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ--AIRMVDWDEFLDNPVLGTALIDMYA 774

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG                +  AW                  +F QM ++D++ W AMI 
Sbjct: 775 KCG---------------STVEAWV-----------------VFQQMRKKDIIVWNAMIL 802

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G    G    A  L G+ME  G+  ++ T + +L +C   G +  G+R      +     
Sbjct: 803 GLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 862

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             I     ++D+ ++ G +  A  +   +P     V +  +++ G   H   E +  V +
Sbjct: 863 PRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV-ILGALLGGCKIHRNTELAEHVLK 921

Query: 439 EMELM 443
           ++ L+
Sbjct: 922 QLILL 926



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 19/292 (6%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++R +F ++ + +   W  ++ GY+ +  P+EAL L+ +M ++G+  P+ +     L++C
Sbjct: 680 KAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KPDCYAVAGALSAC 738

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRN-----ALIHFYSIFGYINNAHKVFEGSLARD 174
            RL +   G Q     I+  +++D F+ N     ALI  Y+  G    A  VF+    +D
Sbjct: 739 TRLGALDLGRQA----IRM-VDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKD 793

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           ++ +N +I G         A  L  +M+ S ++ +  TF+ +  +CT     + G+++  
Sbjct: 794 IIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 853

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            + K L  +   +     ++++ ++ GL+  A ++   M M  +     +++ G      
Sbjct: 854 NMTK-LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRN 912

Query: 295 IERARQLFDQMDQRDLVSWTA----MISG-YSQVGGFSQALELFGKMESLGI 341
            E A  +  Q+    L  W +    M+S  YS  G +  A +L   M++ G+
Sbjct: 913 TELAEHVLKQLIL--LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGV 962



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 327 SQALELFG-KMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLT 384
           S AL L   ++  L  +P  +T+   L++   L   L  G++LH + ++ +    N  + 
Sbjct: 506 SSALHLHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLK-LPSHTNPHVL 564

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           T+++ +YAKCG +  A  VF ++P    +   + ++I+     G    ++ V R     G
Sbjct: 565 TSLLSLYAKCGLLHRAQRVFDEMPH--PSTVPWTALITAYMDAGDLREAVHVARNAFANG 622

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           ++PD  T V VL AC+    +  G+  + +    G+   +      VDL  + G + +A 
Sbjct: 623 MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 682

Query: 505 GLIQSMPYDANSVIWRALL 523
            +   M +  ++V W A++
Sbjct: 683 EVFDKMRHK-DAVAWGAMV 700


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 365/627 (58%), Gaps = 27/627 (4%)

Query: 110 FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL--FIRNALIHFYSIFGYINNAHKVF 167
             F  +L  CAR S+ + G Q+H      GL F    F+ NAL+H Y+     ++A K+F
Sbjct: 13  LIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLF 72

Query: 168 E--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
           +      +D V Y  LI    +   P  AL  + +M+   +  D    +    AC++L D
Sbjct: 73  DRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGD 128

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
             +  Q H  V K  G +    +L   V++ Y KCGL+  A RVF  +    S  +W+ +
Sbjct: 129 SNLVPQMHVGVVK-FGFLRHTKVL-NGVMDGYVKCGLVGEARRVFEEI-EEPSVVSWTVV 185

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME---SLGIH 342
           + G  +   +E  + +FD+M +R+ V+WT +I GY   G   +A  L  +M      G  
Sbjct: 186 LEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFG 245

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            + +T+ +VL AC   G +  G+ +H   ++ V +   + + T+++DMYAKCG I  AL 
Sbjct: 246 LNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALM 305

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +P+  + V  +N+++ GLA HG+G+  + +F  M +  +KPD VTF+ +L +CSH 
Sbjct: 306 VFRHMPR--RNVVAWNAMLCGLAMHGMGKVVVEMFACM-VEEVKPDAVTFMALLSSCSHS 362

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLVE+G Q+F  +   YGI+P++EHY CMVDLL R GRL+EA  L++ +P   N V+  +
Sbjct: 363 GLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGS 422

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL AC  H   ++GE   ++L+ ++P +  +++LLSNM A   + ++A  +RK++ + GI
Sbjct: 423 LLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGI 482

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT-VQVVFDVD 640
           +K PG S I  +G LHRF+A  KSHP+T +I + L DM  KL+ AGYVPNT  QV+F   
Sbjct: 483 RKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCS 542

Query: 641 E--------EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
                    EE E V+  HSEKLAL FGL+++ S   + I KNLRIC DCH A K+ S+I
Sbjct: 543 NGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDI 602

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
           Y+REI+VRD  RFH FK+G+CSC D+W
Sbjct: 603 YKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 119/257 (46%), Gaps = 5/257 (1%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGI-VSPNNFTFP 113
            G+   +++F ++   N   W  L++GY  S   +EA +L   M+   G     N+ T  
Sbjct: 193 EGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLC 252

Query: 114 FVLNSCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
            VL++C++      G  +HC+ +K  G +  + +  +L+  Y+  G I+ A  VF     
Sbjct: 253 SVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPR 312

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R++V++N ++ G A        + +F  M +  ++PDA TF+A+ S+C+       G Q+
Sbjct: 313 RNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVTFMALLSSCSHSGLVEQGWQY 371

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
              + +  G +   +     ++++  + G +  AE +   + +  +     S++      
Sbjct: 372 FHDLERAYG-IRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAH 430

Query: 293 GKIERARQLFDQMDQRD 309
           GK+    ++  ++ Q D
Sbjct: 431 GKLRLGEKIMRELVQMD 447



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 154/366 (42%), Gaps = 30/366 (8%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           Q  A  F ++   C   +  R G+Q HA    +      +  L  A++++YA C L + A
Sbjct: 9   QQCALIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHA 68

Query: 267 ERVFSTMGMS-KSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYS 321
            ++F  +  S K +  ++++I    R      A + + QM QR    D V+    +   S
Sbjct: 69  RKLFDRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGACS 124

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           ++G  +   ++   +   G       +  V+   V  G +   +R+ ++  E  V     
Sbjct: 125 KLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVS--- 181

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
              T V++   KC  +++   VF ++P+  +    +  +I G    G  + +  + +EM 
Sbjct: 182 --WTVVLEGVVKCEGVESGKVVFDEMPERNEVA--WTVLIKGYVGSGFTKEAFLLLKEMV 237

Query: 442 L---MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM-----VDL 493
                G   + +T  +VL ACS  G V  G+        Y +K      G M     VD+
Sbjct: 238 FGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVH----CYAVKAVGWDLGVMVGTSLVDM 293

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK-IGEIAGQKLLDLEPDHGAH 552
            A+ GR+  A  + + MP   N V W A+L    +H   K + E+    + +++PD    
Sbjct: 294 YAKCGRISAALMVFRHMP-RRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEEVKPDAVTF 352

Query: 553 YVLLSN 558
             LLS+
Sbjct: 353 MALLSS 358


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 360/623 (57%), Gaps = 49/623 (7%)

Query: 104  IVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
            + +P++ T P  L S +RL    ++G Q+H   +K     +  +  +L+  Y+  G ++ 
Sbjct: 544  LPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHR 603

Query: 163  AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
            A +VF+       V +  LI  Y    +   A+ + R    + ++PD+FT V + +AC  
Sbjct: 604  AQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACAR 663

Query: 223  LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
            + D   G+       +    V  ++ + TA +++Y KCG                     
Sbjct: 664  IADLATGETVWRAAEQE--GVAQSVFVATAAVDLYVKCG--------------------- 700

Query: 283  SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       ++ +AR++FD+M  +D V+W AM+ GY+  G   +AL+LF  M++ G+ 
Sbjct: 701  -----------EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMK 749

Query: 343  PDEVTMVAVLRACVGLGALDFGKRL-----HQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
            PD   +   L AC  LGALD G++        ++++N V G      TA+IDMYAKCGS 
Sbjct: 750  PDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG------TALIDMYAKCGST 803

Query: 398  DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
              A  VF ++ K  K + ++N++I GL   G  + + A+  +ME  G+K +  TF+ +LC
Sbjct: 804  VEAWVVFQQMRK--KDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLC 861

Query: 458  ACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
            +C+H GL+++G+++F +M   Y I P++EHYGCMVDLL+R G L EA+ L+  MP  AN+
Sbjct: 862  SCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANA 921

Query: 517  VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            VI  ALL  C++HRN ++ E   ++L+ LEP +  +YV+LSN+ +   RWE+A ++R  M
Sbjct: 922  VILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDM 981

Query: 577  DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
               G++K P  S++E  G +H F    KSHP + +I   L ++ +++K+ GY P T  V+
Sbjct: 982  KAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 1041

Query: 637  FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            FDV++EEKE  + +HSEKLA+AF L+ +   ETIR+TKNLR+C DCH A KL+S I  RE
Sbjct: 1042 FDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHRE 1101

Query: 697  IMVRDAIRFHLFKKGNCSCMDFW 719
            I+VRD  RFH F+ G+CSC D+W
Sbjct: 1102 IIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 192/425 (45%), Gaps = 42/425 (9%)

Query: 21  LKQALQIHGQIVH--SGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           L+   Q+H + +   S  N H+ +S L+S +A  G    L R++ +F ++ +P+   W  
Sbjct: 566 LRAGEQLHARSLKLPSHTNPHVLTS-LLSLYAKCGL---LHRAQRVFDEMPHPSTVPWTA 621

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           L+  Y  +   +EA+ +  +  + G+  P++FT   VL +CAR++   +G  +     + 
Sbjct: 622 LITAYMDAGDLREAVHVARNAFANGM-RPDSFTAVRVLTACARIADLATGETVWRAAEQE 680

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G+   +F+  A +  Y   G +  A +VF+    +D V++  ++ GYA    P  AL LF
Sbjct: 681 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 740

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             MQ   ++PD +      SACT L    +G+Q  A+   +      N +L TA+I+MYA
Sbjct: 741 LAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ--AIRMVDWDEFLDNPVLGTALIDMYA 798

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG                +  AW                  +F QM ++D++ W AMI 
Sbjct: 799 KCG---------------STVEAWV-----------------VFQQMRKKDIIVWNAMIL 826

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G    G    A  L G+ME  G+  ++ T + +L +C   G +  G+R      +     
Sbjct: 827 GLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 886

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
             I     ++D+ ++ G +  A  +   +P     V +  +++ G   H   E +  V +
Sbjct: 887 PRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV-ILGALLGGCKIHRNTELAEHVLK 945

Query: 439 EMELM 443
           ++ L+
Sbjct: 946 QLILL 950



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 19/292 (6%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++R +F ++ + +   W  ++ GY+ +  P+EAL L+ +M ++G+  P+ +     L++C
Sbjct: 704 KAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGM-KPDCYAVAGALSAC 762

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRN-----ALIHFYSIFGYINNAHKVFEGSLARD 174
            RL +   G Q     I+  +++D F+ N     ALI  Y+  G    A  VF+    +D
Sbjct: 763 TRLGALDLGRQA----IRM-VDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKD 817

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           ++ +N +I G         A  L  +M+ S ++ +  TF+ +  +CT     + G+++  
Sbjct: 818 IIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 877

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            + K L  +   +     ++++ ++ GL+  A ++   M M  +     +++ G      
Sbjct: 878 NMTK-LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRN 936

Query: 295 IERARQLFDQMDQRDLVSWTA----MISG-YSQVGGFSQALELFGKMESLGI 341
            E A  +  Q+    L  W +    M+S  YS  G +  A +L   M++ G+
Sbjct: 937 TELAEHVLKQLIL--LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGV 986



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 327 SQALELFG-KMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLT 384
           S AL L   ++  L  +P  +T+   L++   L   L  G++LH + ++ +    N  + 
Sbjct: 530 SSALHLHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLK-LPSHTNPHVL 588

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           T+++ +YAKCG +  A  VF ++P    +   + ++I+     G    ++ V R     G
Sbjct: 589 TSLLSLYAKCGLLHRAQRVFDEMPH--PSTVPWTALITAYMDAGDLREAVHVARNAFANG 646

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           ++PD  T V VL AC+    +  G+  + +    G+   +      VDL  + G + +A 
Sbjct: 647 MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 706

Query: 505 GLIQSMPYDANSVIWRALL 523
            +   M +  ++V W A++
Sbjct: 707 EVFDKMRHK-DAVAWGAMV 724


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/726 (34%), Positives = 397/726 (54%), Gaps = 61/726 (8%)

Query: 7   EHSSLLALLE---SCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKN-GLFR 60
           +H SL  LL       S+ +  Q+H  ++  G +    +S+S L S+     CK   L  
Sbjct: 197 DHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSY-----CKTRSLGL 251

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +  LF+ I   +   +N L+ GYS+    +EA+ L+  M   G   P  FTF  +L +  
Sbjct: 252 AFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVG-YRPTEFTFAAILTAGI 310

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L   + G Q+H  ++K    +++F+ NAL+ FYS    +  A K+F      D +SYN 
Sbjct: 311 QLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNV 370

Query: 181 LINGYA---QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA--V 235
           L+  YA   +VKE   +L LF+++Q +      F F  + S      +  IG+Q H+  +
Sbjct: 371 LVTCYAWNGRVKE---SLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTI 427

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           V   +    S +L+  ++++MYAKCG    A R                           
Sbjct: 428 VTDAI----SEILVGNSLVDMYAKCGEFGEANR--------------------------- 456

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
                +F  +  +  V WTAMIS Y Q G     L+LF +M+   I  D  T  +++RAC
Sbjct: 457 -----IFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRAC 511

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             L +L  GK+LH   I +     N+F  +A++DMYAKCGSI  AL +F ++P  ++   
Sbjct: 512 ASLASLTLGKQLHSHIIGSGYIS-NVFSGSALVDMYAKCGSIKDALQMFQEMP--VRNSV 568

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N++IS  AQ+G G+ ++ +F EM   GL+PD V+ +++LCACSH GLVEEG Q+F+SM
Sbjct: 569 SWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSM 628

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              Y + P+ EHY   +D+L R GR DEA  L+  MP++ + ++W ++L +C +H+N ++
Sbjct: 629 TRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQEL 688

Query: 535 GEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
            + A  +L +++     A YV +SN+ A    W+   +V+K M + G++K P +S++E  
Sbjct: 689 AKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIK 748

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
              H F A+ K+HPQ +EI   L ++  K+   GY P++   + +VDEE K   + YHSE
Sbjct: 749 HKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSE 808

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           ++A+AF LI++     I + KNLR C DCH A K++S+I RREI VRD+ RFH F+ G C
Sbjct: 809 RIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFC 868

Query: 714 SCMDFW 719
           +C D+W
Sbjct: 869 TCRDYW 874



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 202/421 (47%), Gaps = 13/421 (3%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           NN   P   N    L++ K    +   IIK G   + +  N L+  +   G +N A K+F
Sbjct: 65  NNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLF 124

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +    +++ S NT+I GY +      A  LF    DS  Q  A T+  +     + N  R
Sbjct: 125 DEMPHKNIFSTNTMIMGYIKSGNLSEARTLF----DSMFQRTAVTWTMLIGGYAQNNQFR 180

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS---TMGMSKSTAAWSS 284
             + F   +      +  + +    +++ + +   +N   +V S    +G   +    +S
Sbjct: 181 --EAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNS 238

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           ++  Y +   +  A QLF+ + +RD V++ A+++GYS+ G   +A+ LF KM+ +G  P 
Sbjct: 239 LLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPT 298

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           E T  A+L A + L  ++FG+++H  ++    F  N+F+  A++D Y+K   +  A  +F
Sbjct: 299 EFTFAAILTAGIQLDDIEFGQQVH-GFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLF 357

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
           Y++P+ +  +S +N +++  A +G  + S+ +F+E++  G       F T+L   +    
Sbjct: 358 YEMPE-VDGIS-YNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLN 415

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           ++ G+Q     +      ++     +VD+ A+ G   EA  +   +   + SV W A+++
Sbjct: 416 LDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQS-SVPWTAMIS 474

Query: 525 A 525
           +
Sbjct: 475 S 475


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/645 (36%), Positives = 371/645 (57%), Gaps = 46/645 (7%)

Query: 72  NIFIWNTLMRGYSR----SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + F+++T +R   R    S  P    VL+  M  +  V P+ FTF F+   C+  S  ++
Sbjct: 4   STFLFDTALRACFRAGTSSGDPDIPFVLFRRM-RRAAVRPDGFTFHFLFK-CSSSSRPRA 61

Query: 128 --GCQIHCHIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFE---------------- 168
                +H   ++  L     F+ N+LIH Y+  G   +  + F+                
Sbjct: 62  LLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISG 121

Query: 169 ----GSLA-----------RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
               G L+           RD++S+ +LI  Y++      A+  F+ M    I PD  T 
Sbjct: 122 LAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTV 181

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
           + + SAC++L D  +G   H +V +    +  N+++  A+I+MYAKCG    A  VF  +
Sbjct: 182 IGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVV--ALIDMYAKCGDFGHAREVFDAV 239

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           G  +   +W+++I GY + G ++ AR LFDQM+ RD++++ +MI+GY   G   +AL LF
Sbjct: 240 GRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLF 299

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M    +  D  T+V++L AC  LGAL  G+ LH   IE  +   +I++ TA++DMY K
Sbjct: 300 MNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDIYIGTALLDMYMK 358

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG ++ A  VF ++ K  + V  + ++I+GLA +G+G+  +  F +M   G +P+ V+++
Sbjct: 359 CGRVNEATIVFQRMGK--RDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYI 416

Query: 454 TVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            VL ACSH  L+ EG+ +F+ M + Y I PQ+EHYGCM+DLL R G LDEA  L+++MP 
Sbjct: 417 AVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPM 476

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
             NSVIW ++L+ACR+H+   + + A + LL +EPD  A YV L N+  ++ +WE+A ++
Sbjct: 477 QPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKI 536

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           R LM++  ++K  G+S +   G +H+F+ S KSHP+  EI  ML++++ +LKSAGY P T
Sbjct: 537 RMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPIT 596

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
            QV  DVDEEEKE  +  HSEKLA+AFGL++      + I KNLR
Sbjct: 597 SQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLR 641



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/580 (24%), Positives = 275/580 (47%), Gaps = 51/580 (8%)

Query: 20   SLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
            S  +ALQ+HG+++  GL  N  + S+ +  +  +      L     LF ++   N  + N
Sbjct: 746  STYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALS----LFRELPLQNTAMCN 801

Query: 78   TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF-KSGCQIHCHII 136
             ++RG       +E +  +  M  +  +  N  ++ + +  C +   + + G Q+H  ++
Sbjct: 802  VVLRGLGNLKLTEELICCFLDM-RRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVL 860

Query: 137  KFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
            K G +  ++F+ N+L+  YS  G   +  K     L+ D++S+N++++ YA       A+
Sbjct: 861  KAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAV 920

Query: 196  WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +  ++M      P   +FV++ +   +  D ++G Q H +V+K LG   S++ ++T +I+
Sbjct: 921  YYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHK-LGFSCSSVHVQTTLID 979

Query: 256  MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
            MY KC                                   + +  +F+++    L    +
Sbjct: 980  MYGKCCC--------------------------------FDHSLAIFNEIPSIALECCNS 1007

Query: 316  MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA---LDFGKRLHQQYI 372
            +I+       F  ALE+   M   G+ PD+VT  A ++A + L A   L   + LH   +
Sbjct: 1008 LITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKA-ISLSASPSLTSCQMLHSCLV 1066

Query: 373  ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
            + + F  ++ + +++I  YA  G + ++  +F  +      V  F +IIS  A++G G  
Sbjct: 1067 K-LGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLD--PNVICFTAIISACARYGDGAR 1123

Query: 433  SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMV 491
            ++ +F +M   GLKPD VTF+  +  C   G+ EEG+   E M  +  + P   H+ CMV
Sbjct: 1124 AMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMV 1183

Query: 492  DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
            +LL+RDG + EA  +++  P    +  W +LL +C+ H    +G+ A   L+D+     A
Sbjct: 1184 NLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPA 1243

Query: 552  HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
              + +SN   +    E A +++++ +   ++K  G S IE
Sbjct: 1244 TTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIE 1282



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 203/445 (45%), Gaps = 81/445 (18%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + +IS  A  G    L  +R+L +Q    ++  W +L+  YSR+D  +EA+  + +M
Sbjct: 113 VSWTMVISGLAKMGM---LSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM 169

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE------------------ 141
           LS+GI +P++ T   VL++C++L   + GC +H  + + G+                   
Sbjct: 170 LSEGI-APDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGD 228

Query: 142 -------FDLFIR-------NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
                  FD   R       NA+I  Y   G+++ A  +F+    RD++++N++I GY  
Sbjct: 229 FGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIH 288

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL LF  M+   ++ D FT V++ SAC  L     G+  HA +   L  V +++
Sbjct: 289 SGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACI--ELRLVETDI 346

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + TA+++MY KCG +N A  VF  MG  +   AW++MI+G                   
Sbjct: 347 YIGTALLDMYMKCGRVNEATIVFQRMG-KRDVHAWTAMIAGLA----------------- 388

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                     +G  + G     LE F +M   G  P+ V+ +AVL AC     L+ G+  
Sbjct: 389 ---------FNGMGKAG-----LEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGR-- 432

Query: 368 HQQYIENVVFGRNIFLTT----AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
              Y + +    NI         +ID+  + G +D A+ +   +P    +V ++ SI+S 
Sbjct: 433 --LYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSV-IWASILSA 489

Query: 424 LAQHGLGETSIAVFREMELMGLKPD 448
              H      +A      L+ ++PD
Sbjct: 490 CRVH--KRIDLAQCAAEHLLKIEPD 512



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 16/332 (4%)

Query: 10   SLLALLESCKSLKQALQIHGQIVH----SGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
            SLLAL       +  +QIHG IVH    S  + H+ ++ LI  +    C +    S  +F
Sbjct: 940  SLLALSGKTGDWQLGVQIHG-IVHKLGFSCSSVHVQTT-LIDMYGKCCCFD---HSLAIF 994

Query: 66   SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++I +  +   N+L+      +    AL +   M+ +G V+P++ TF   + + +  +S 
Sbjct: 995  NEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEG-VTPDDVTFSATMKAISLSASP 1053

Query: 126  K-SGCQ-IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
              + CQ +H  ++K G E D+ + ++LI  Y+  G ++++H +FEG L  +++ +  +I+
Sbjct: 1054 SLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIIS 1113

Query: 184  GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
              A+  +   A+ LF +M  S ++PD  TF+   + C +      G+    ++  +   +
Sbjct: 1114 ACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRE-L 1172

Query: 244  GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQ 300
              +      ++N+ ++ G +  A  +     +   T AWSS++      G+    +RA  
Sbjct: 1173 DPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAAN 1232

Query: 301  LFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
            +   + ++D  +   + + ++ +G    AL +
Sbjct: 1233 MLIDVGRKDPATTLQVSNFFNDIGDRETALRI 1264



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD+ S   MI+G+ + G   +A  ++  M + GI     T   +L  C    AL   
Sbjct: 695 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 751

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            +LH + +  +    N F+ +A+++ Y    S   ALS+F ++P  L+  ++ N ++ GL
Sbjct: 752 -QLHGRVLA-LGLCCNPFVGSALVNHYMHVESPHAALSLFRELP--LQNTAMCNVVLRGL 807

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFESMLNYGIKP 482
               L E  I  F +M    L+ +G+++   +  C  +G  +E+G+Q    +L  G  P
Sbjct: 808 GNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIP 866


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/648 (37%), Positives = 378/648 (58%), Gaps = 32/648 (4%)

Query: 9   SSLLALLES----CKSLKQALQIHGQIVHSGLNHHISSS----QLISFFALS--GCKNGL 58
           S LL LL +      S +  L++H   + SGL    S+S    +L++ FA S       L
Sbjct: 5   SRLLVLLHAGAVHPPSFRVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPASPRPL 64

Query: 59  FRSRILFSQIDNP--NIFIWNTLMRGYSRSDSPQEALV------LYTSMLSKGIVSPNNF 110
             +  + + + +P  + F +N   R  S    P + LV      LY ++L  G   P++ 
Sbjct: 65  LHALAILASLPSPPDSAFPYNAAFRALSLC--PHQHLVDRHCLPLYRALLHSGSARPDHL 122

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TFPF++ +CARL     G  +  H+ K G   D+F+ NA +HF+S+ G +  A ++F+ S
Sbjct: 123 TFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDES 182

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQD--SCIQPDAFTFVAMFSACTELNDPRI 228
             RD+VS+NTLI GY +   P  AL LF ++ +  + ++PD  T +   S C ++ D  +
Sbjct: 183 PVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLEL 242

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           GK+ H  V  N G V   + L  AV++MY KCG + +A  VF  +  +++  +W++MI G
Sbjct: 243 GKRLHEFV-DNKG-VRCTVRLMNAVMDMYVKCGSLELANSVFERIS-NRTAVSWTTMIVG 299

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           + R G +E AR LFD+M +RD+  W A+++GY Q     +A+ LF +M+   + P+E+TM
Sbjct: 300 HARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITM 359

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V +L AC  LGAL+ G  +H  YI+      ++ L T+++DMYAKCG+I  A+ VF +IP
Sbjct: 360 VNLLSACSQLGALEMGMWVHH-YIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIP 418

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
             ++    + S+I GLA HG  + +I  F+ M  +GL+PD +TF+ VL AC H GLVE G
Sbjct: 419 --VQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAG 476

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           +QFF  M   Y ++ +M+HY CM+DLL R G LDEA  L+ +MP D ++V+W AL  ACR
Sbjct: 477 RQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACR 536

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           +H N  +GE A  KL++L+P     YVLL+NM AE    ++A +VR +M   G++K PG 
Sbjct: 537 MHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGC 596

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           S IE NG +H F+   KSH  T  I   L ++T++++   ++ N + +
Sbjct: 597 SCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMR---HIANLIDI 641


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 353/612 (57%), Gaps = 21/612 (3%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGL--EFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
           +L SC   S+ +   ++H  +++ GL    D  +   L   Y+  G ++ +  +   +  
Sbjct: 295 LLTSC---STARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRD 351

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
              + Y + I+ ++      PAL L   M    + P A T  A   AC  L+    G+  
Sbjct: 352 PTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSP---GRAL 408

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H   +K L   G + +  TA++ MYA+ G    A  +F  M       + ++M++ Y   
Sbjct: 409 HGYAFK-LALAGDSYV-ATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADM 466

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G ++ AR LFD +  +D V W AMI GY+Q G  ++AL LF +M   G+ PDEVT+V VL
Sbjct: 467 GALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVL 526

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLT----TAVIDMYAKCGSIDTALSVFYKIP 408
            A   LG ++ GK LH  Y++N    R + L+    TA+IDMY KCGS+  A+ VF+ I 
Sbjct: 527 SAVAQLGTVESGKWLHS-YVKN---SRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG 582

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              K + ++N++I+G A HG    ++ +F +    GL P  +TF+ +L ACSH G+VEEG
Sbjct: 583 D--KDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEG 640

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           ++FF+SM   YGI P++EHYGCMVDLL R G + EA+ L+QSM    ++V+W +LLAACR
Sbjct: 641 REFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACR 700

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           LH+N  +G+     L+     +   Y+LLSN+ A    W E  +VR +M  SGIQK PG 
Sbjct: 701 LHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGC 760

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV 647
           S IE +  ++ F+A   SHP+T EI +ML  M   +K  G+VP T  V+ D+DE  KE  
Sbjct: 761 SSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKA 820

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           ++ HSEKLALAFGLI+++   TI+I KNLR C DCH   KL+S I  R+I+ RD  RFH 
Sbjct: 821 LAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHH 880

Query: 708 FKKGNCSCMDFW 719
           F  G+CSC D+W
Sbjct: 881 FVDGSCSCGDYW 892



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 206/511 (40%), Gaps = 111/511 (21%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRS 61
           VL     ++LL SC + ++A ++H  ++ +GL        + +L   +A SG    L  S
Sbjct: 286 VLTADRAVSLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASG---RLDLS 342

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             L  +  +P    + + +  +S       AL L + ML++G++ P   T    L +C  
Sbjct: 343 LALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLL-PTAHTLSASLPACRG 401

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF---------------------------- 153
           LS    G  +H +  K  L  D ++  AL+                              
Sbjct: 402 LS---PGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTA 458

Query: 154 ----YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
               Y+  G +++A  +F+G   +D V +N +I+GY Q   P  AL LFR+M  S ++PD
Sbjct: 459 MLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPD 518

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T V + SA  +L     GK  H+ V KN   V  ++ + TA+I+MY KCG +  A  V
Sbjct: 519 EVTVVLVLSAVAQLGTVESGKWLHSYV-KNSRRVQLSVRVGTALIDMYCKCGSLGDAVDV 577

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  +G  K    W++MI+GY   G            D R                   +A
Sbjct: 578 FHGIG-DKDIVVWNAMINGYAMHG------------DSR-------------------KA 605

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           LE+F +    G+ P ++T + +L AC   G ++ G+   Q           I     ++D
Sbjct: 606 LEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVD 665

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           +  + G I  A                                    F  ++ M + PD 
Sbjct: 666 LLGRAGLIKEA------------------------------------FCLVQSMKITPDA 689

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           V +V++L AC     +  G+Q  + ++  G+
Sbjct: 690 VMWVSLLAACRLHKNMSLGQQIADYLVAKGL 720



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 151/312 (48%), Gaps = 11/312 (3%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           H +S + +++ +A  G    L  +R LF  +   +   WN ++ GY++   P EAL L+ 
Sbjct: 452 HVVSVTAMLTCYADMG---ALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFR 508

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIR--NALIHFYS 155
            ML  G V P+  T   VL++ A+L + +SG  +H + +K      L +R   ALI  Y 
Sbjct: 509 RMLGSG-VEPDEVTVVLVLSAVAQLGTVESGKWLHSY-VKNSRRVQLSVRVGTALIDMYC 566

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G + +A  VF G   +D+V +N +INGYA   +   AL +F + ++  + P   TF+ 
Sbjct: 567 KCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIG 626

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + +AC+       G++F   + +  G +   +     ++++  + GL+  A  +  +M +
Sbjct: 627 LLNACSHSGMVEEGREFFQSMEREYG-IDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKI 685

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVGGFSQALEL 332
           +     W S+++       +   +Q+ D +  + L +   +  + + Y+ VG + +   +
Sbjct: 686 TPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARV 745

Query: 333 FGKMESLGIHPD 344
              M++ GI  +
Sbjct: 746 RSMMKASGIQKE 757


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 349/608 (57%), Gaps = 44/608 (7%)

Query: 150  LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
            L+  Y++ G   +   +F+    +++V +N +I  Y        AL +F+ M    I PD
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 210  AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             +T+  +  A +   D  +G Q HA V + +G +  N+ +   +I+MY KCG +  A RV
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVR-VG-LDLNVFVGNGLISMYGKCGCLVEACRV 1183

Query: 270  FSTMGMSKSTAAWSSMISGYTREGKIERA------------------------------- 298
               M   +   +W+S+++G  R G+ + A                               
Sbjct: 1184 LDZMP-CRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 1242

Query: 299  ------RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                  +++F ++  + LVSW  MI+ Y      ++A+++F +ME   + PD +++ +VL
Sbjct: 1243 DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVL 1302

Query: 353  RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
             AC  L AL  G+R+H+ Y+       N+ L  A+IDMYAKCG ++ A  VF ++    +
Sbjct: 1303 PACGDLSALLLGRRIHE-YVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQM--KFR 1359

Query: 413  TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
             V  + S+IS    +G G  ++++F  M+ +GL PD + FV+VL ACSH GL++EG+ +F
Sbjct: 1360 DVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYF 1419

Query: 473  ESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            + M     I P++EH+ CMVDLL R G++DEAYG I+ MP + N  +W ALL+ACR++ N
Sbjct: 1420 KLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSN 1479

Query: 532  AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
              IG +A  +L  L P+   +YVLLSN+ A+  RWE+   VR +M   GI+K PG S  E
Sbjct: 1480 MIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFE 1539

Query: 592  HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
             +  +H FLA  +SHPQ+K+I   L  +  K+K AGYVP T   + DV+EE+KE  ++ H
Sbjct: 1540 LDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVH 1599

Query: 652  SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
            SEKLA+AF ++N+     IRITKNLR+CGDCH+A KL+S+I  REI +RD  RFH F  G
Sbjct: 1600 SEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNG 1659

Query: 712  NCSCMDFW 719
             CSC D+W
Sbjct: 1660 VCSCGDYW 1667



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 212/436 (48%), Gaps = 50/436 (11%)

Query: 14   LLESCKSLKQALQIHGQIVHSGLNHHISSS-----QLISFFALSGCKNGLFRSRILFSQI 68
            +L+    +K   ++H +I    ++H + S+     +L+  +A+ G     + +R +F +I
Sbjct: 1033 ILDKNPDIKYLKKLHSKIC---IDHDLHSNPSLGIKLMRAYAVCG---EPWSTRHIFDEI 1086

Query: 69   DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
               N+  +N ++R Y  +    +AL+++ +M   GI  P+++T+P VL + +       G
Sbjct: 1087 PKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGI-DPDHYTYPCVLKASSGSEDLWVG 1145

Query: 129  CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             QIH  +++ GL+ ++F+ N LI  Y   G +  A +V +    RD+VS+N+L+ G A+ 
Sbjct: 1146 MQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARN 1205

Query: 189  KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL---NDPRIGKQFHAVVYKNLGCVGS 245
             +   AL + ++M+   ++PDA T  ++  A T     N   + + F  +  K+L  V  
Sbjct: 1206 GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSL--VSW 1263

Query: 246  NMLLKT---------------------------AVINMYAKCGLMN---MAERVFSTM-- 273
            N+++                             ++ ++   CG ++   +  R+   +  
Sbjct: 1264 NVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVR 1323

Query: 274  -GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
              +  +    +++I  Y + G +E AR++FDQM  RD+VSWT+MIS Y   G    A+ L
Sbjct: 1324 KRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSL 1383

Query: 333  FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
            F +M+ LG++PD +  V+VL AC   G LD G+   +   E       I     ++D+  
Sbjct: 1384 FSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLG 1443

Query: 393  KCGSIDTALSVFYKIP 408
            + G +D A     ++P
Sbjct: 1444 RAGQVDEAYGFIKQMP 1459



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 137/286 (47%), Gaps = 2/286 (0%)

Query: 3    RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
            R V+  +SL+A          AL++  ++   GL     +   +     + C + +   +
Sbjct: 1190 RDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVK 1249

Query: 63   ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
             +F ++ N ++  WN ++  Y  +  P EA+ ++  M     V P+  +   VL +C  L
Sbjct: 1250 EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA-VDPDAISIASVLPACGDL 1308

Query: 123  SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            S+   G +IH ++++  L+ +L + NALI  Y+  G +  A +VF+    RD+VS+ ++I
Sbjct: 1309 SALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 1368

Query: 183  NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            + Y    +   A+ LF +MQD  + PD+  FV++ SAC+       G+ +  ++ +    
Sbjct: 1369 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 1428

Query: 243  VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            V   +     ++++  + G ++ A      M M  +   W +++S 
Sbjct: 1429 V-PRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 1473



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 9/196 (4%)

Query: 365  KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            K+LH +   +     N  L   ++  YA CG   +   +F +IPK  K V  FN +I   
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK--KNVVFFNVMIRSY 1101

Query: 425  AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
              + L   ++ VF+ M   G+ PD  T+  VL A S    +  G Q   +++  G+   +
Sbjct: 1102 VNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 1161

Query: 485  EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG---EIAGQ- 540
                 ++ +  + G L EA  ++  MP   + V W +L+A C   RN +     E+  + 
Sbjct: 1162 FVGNGLISMYGKCGCLVEACRVLDZMPC-RDVVSWNSLVAGCA--RNGQFDDALEVCKEM 1218

Query: 541  KLLDLEPDHGAHYVLL 556
            +LL L+PD G    LL
Sbjct: 1219 ELLGLKPDAGTMASLL 1234


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/793 (33%), Positives = 424/793 (53%), Gaps = 88/793 (11%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS------SSQLISFFALSGCKN 56
           ++ +E  + +ALL  C+  + A +  G  VHS ++  ++       + L+S F   G   
Sbjct: 89  QVSVEEETYIALLRLCEWKRAASE--GSRVHSYVSKTVTRLGVRLGNALLSMFVRFG--- 143

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            L  +  +F ++   ++F WN L+ GY+++    EAL LY  ML  GI  P+ +TFP VL
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI-RPDVYTFPCVL 202

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +C  L     G ++H H+I++G E D+ + NALI  Y   G I +A  VF+    RD +
Sbjct: 203 RTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRI 262

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N +I+GY +       L LF  M++  + PD  T  ++ SAC  L D R+G++ H  V
Sbjct: 263 SWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYV 322

Query: 237 YK------------------NLGC------VGSNMLLK-----TAVINMYAKCGLMNMAE 267
            K                  ++GC      V S M  K     TA+I+ Y K GL   A 
Sbjct: 323 IKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAV 382

Query: 268 RVFSTM--------------------------------------GMSKSTAAWSSMISGY 289
             ++ M                                      G++      +S+I  Y
Sbjct: 383 ETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMY 442

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
           ++   I++A ++F ++  ++++SWT++I G        +AL  F +M  L + P+ VT+V
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLV 501

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL AC  +GAL  GK +H   +   + G + FL  A++DMY +CG ++ A + F    K
Sbjct: 502 SVLSACARIGALSCGKEIHAHALRTGL-GFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK 560

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
           +   V+ +N +++G AQ G G  ++ +F +M    + PD +TF ++LCACS  G+V +G 
Sbjct: 561 D---VASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGL 617

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           ++FESM + + I P ++HY  +VDLL R GRL++AY  I+ MP D +  IW ALL ACR+
Sbjct: 618 EYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRI 677

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           ++N ++GE+A Q + +++     +Y+LL N+ A++ +W+E  +VRK+M ++ +   PG S
Sbjct: 678 YQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCS 737

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           ++E  G +H FL     HPQ KEI  +L+    K+++ G   +      D+D  + E + 
Sbjct: 738 WVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAE-IF 796

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSE+LA+AFGLIN+     I +TKNL +C +CH   K +S++ RR I VRD  +FH F
Sbjct: 797 CGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHF 856

Query: 709 KKGNCSCMD--FW 719
           K G CSC D  +W
Sbjct: 857 KDGVCSCGDEGYW 869



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 151/526 (28%), Positives = 232/526 (44%), Gaps = 85/526 (16%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           NPN  I    ++G       ++AL+   SM  +  VS    T+  +L  C    +   G 
Sbjct: 61  NPNSLILELCLKG-----DLEKALIHLDSM-QELQVSVEEETYIALLRLCEWKRAASEGS 114

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++H ++ K      + + NAL+  +  FG +  A  VF     RDL S+N L+ GYA+  
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAG 174

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL L+ +M    I+PD +TF  +   C  L D   G++ H  V +      S++ +
Sbjct: 175 YFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY--GFESDVDV 232

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-- 307
             A+I MY KCG +  A  VF  M   +   +W++MISGY          +LF  M +  
Sbjct: 233 VNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMISGYFENDVCLEGLRLFFMMREFF 291

Query: 308 --RDLVSWTAMIS---------------GY--------------------SQVGGFSQAL 330
              DL++ T++IS               GY                    S VG + +A 
Sbjct: 292 VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAE 351

Query: 331 ELFGKM-------------------------------ESLGIHPDEVTMVAVLRACVGLG 359
            +F KM                               E  G+ PDE+T+ +VL AC GLG
Sbjct: 352 MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG 411

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            LD G  LH ++ +       + +  ++IDMY+KC  ID AL VF++IP   K V  + S
Sbjct: 412 LLDKGIMLH-EFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN--KNVISWTS 468

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           II GL  +     ++  F++M ++ LKP+ VT V+VL AC+  G +  GK+     L  G
Sbjct: 469 IILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +         ++D+  R GR++ A+    S   D  S  W  LL  
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILLTG 571


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/700 (36%), Positives = 386/700 (55%), Gaps = 49/700 (7%)

Query: 24  ALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           A  +HG  V +G   +  ++S+    +F LS   +    +R +F  + +P+  +WNTL+ 
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDD----ARKVFDTVPSPDTILWNTLLA 188

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           G   S    EAL  +  M+  G V P++ T    L + A  S    G  +H + +K GL 
Sbjct: 189 GLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLA 244

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
               +   L+  YS  G +++A  +F+     DLV+YN LI+GY+       ++ LF+++
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKEL 304

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             S  +P++ T VA+    +      + +  HA V K    + ++ L+ TA+  +Y  C 
Sbjct: 305 TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVK--ARLDADALVSTALTTLY--CR 360

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
           L +M                              E AR +FD M ++ + SW AMISGY+
Sbjct: 361 LNDM------------------------------ESARSIFDAMLEKTMESWNAMISGYA 390

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G    A+ LF  M+ L + P+ +T+ + L AC  LGAL  GK +H+  I       N+
Sbjct: 391 QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHR-IISKEKLELNV 449

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           ++ TA+IDMYAKCGSI  A S+F ++    K V  +N++ISG   HG G  ++ ++++M 
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMDN--KNVVSWNAMISGYGLHGQGAEALKLYKDML 507

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
              + P   TF++V+ ACSHGGLV+EG++ F  M N Y I P +EH  CMVDLL R G+L
Sbjct: 508 DARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKL 567

Query: 501 DEAYGLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           +EA  LI   P  A    +W ALL AC +H+N+ + ++A QKL +L+ ++  +YVLLSN+
Sbjct: 568 NEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNL 627

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
                 + EA  VR+      + K PG + IE     H F+A    HPQ++ I   L+ +
Sbjct: 628 YTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERL 687

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
           T K+  AGY P T   ++DV+EEEKE +V  HSEKLA+AFGL+++     IRI KNLR+C
Sbjct: 688 TAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVC 747

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH A K +S++ +R I+VRDA RFH F+ G CSC D+W
Sbjct: 748 LDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 245/525 (46%), Gaps = 63/525 (12%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+AL  + + L Q L +     H  L+   +++ L+ + +L    + L R   LF     
Sbjct: 26  LVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLR---LFRAFPC 82

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-----RLSSF 125
           P+ F+ N L+R    S  P    +L+ S        P++F+F F   S +     R +  
Sbjct: 83  PDRFLRNALLRSLP-SLRPH---LLFPS--------PDSFSFAFAATSLSSSCSSRGNDA 130

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +   +H   +  G   D F+ +AL   Y      ++A KVF+   + D + +NTL+ G 
Sbjct: 131 AAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL 190

Query: 186 AQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
              +    AL  F +M D+  ++PD+ T  +   A  E                      
Sbjct: 191 PGSE----ALEAFVRMVDAGRVRPDSTTLASSLRAAAE---------------------A 225

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S+M +   V     KCGL      V             + ++S Y++ G ++ A+ LFD+
Sbjct: 226 SHMAMGRCVHGYGVKCGLAEHEHVV-------------TGLMSLYSKCGDMDSAQFLFDR 272

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           MD  DLV++ A+ISGYS  G    ++ELF ++ + G  P+  T+VAV+      G     
Sbjct: 273 MDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLA 332

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + LH  ++       +  ++TA+  +Y +   +++A S+F  + +  KT+  +N++ISG 
Sbjct: 333 RCLH-AFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLE--KTMESWNAMISGY 389

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           AQ+GL E ++A+F+ M+ + ++P+ +T  + L AC+H G +  GK     +    ++  +
Sbjct: 390 AQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNV 449

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
                ++D+ A+ G + EA  +   M  + N V W A+++   LH
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISGYGLH 493


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 348/608 (57%), Gaps = 44/608 (7%)

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           L+  Y++ G   +   +F+    +++V +N +I  Y        AL +F+ M    I PD
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            +T+  +  A +   D  +G Q HA V + +G +  N+ +   +I+MY KCG +  A RV
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVR-VG-LDLNVFVGNGLISMYGKCGCLVEACRV 194

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERA------------------------------- 298
              M   +   +W+S+++G  R G+ + A                               
Sbjct: 195 LDQMP-CRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 253

Query: 299 ------RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                 +++F ++  + LVSW  MI+ Y      ++A+++F +ME   + PD +++ +VL
Sbjct: 254 DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVL 313

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  L AL  G+R+H+ Y+       N+ L  A+IDMYAKCG ++ A  VF ++    +
Sbjct: 314 PACGDLSALLLGRRIHE-YVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQM--KFR 370

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  + S+IS    +G G  ++++F  M+ +GL PD + FV+VL ACSH GL++EG+ +F
Sbjct: 371 DVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYF 430

Query: 473 ESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           + M     I P++EH+ CMVDLL R G++DEAYG I+ MP + N  +W ALL+ACR++ N
Sbjct: 431 KLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSN 490

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             IG +A  +L  L P+   +YVLLSN+ A+  RWE+   VR +M   GI+K PG S  E
Sbjct: 491 MIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFE 550

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            +  +H FLA  +SHPQ+K+I   L     K+K AGYVP T   + DV+EE+KE  ++ H
Sbjct: 551 LDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVH 610

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AF ++N+     IRITKNLR+CGDCH+A KL+S+I  REI +RD  RFH F  G
Sbjct: 611 SEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNG 670

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 671 VCSCGDYW 678



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 217/448 (48%), Gaps = 50/448 (11%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSS-----QLISFFALSGCKN 56
           + +VL  +    +L+    +K   ++H +I    ++H + S+     +L+  +A+ G   
Sbjct: 32  QNVVLTENLCGQILDKNPDIKYLKKLHSKIC---IDHDLHSNPSLGIKLMRAYAVCG--- 85

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
             + +R +F +I   N+  +N ++R Y  +    +AL+++ +M   GI  P+++T+P VL
Sbjct: 86  EPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGI-DPDHYTYPCVL 144

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            + +       G QIH  +++ GL+ ++F+ N LI  Y   G +  A +V +    RD+V
Sbjct: 145 KASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVV 204

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL---NDPRIGKQFH 233
           S+N+L+ G A+  +   AL + ++M+   ++PDA T  ++  A T     N   + + F 
Sbjct: 205 SWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFM 264

Query: 234 AVVYKNLGCVGSNMLLKT---------------------------AVINMYAKCGLMN-- 264
            +  K+L  V  N+++                             ++ ++   CG ++  
Sbjct: 265 KLANKSL--VSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSAL 322

Query: 265 -MAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
            +  R+   +    +  +    +++I  Y + G +E AR++FDQM  RD+VSWT+MIS Y
Sbjct: 323 LLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAY 382

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
              G    A+ LF +M+ LG++PD +  V+VL AC   G LD G+   +   E       
Sbjct: 383 GMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPR 442

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           I     ++D+  + G +D A     ++P
Sbjct: 443 IEHFVCMVDLLGRAGQVDEAYGFIKQMP 470



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 137/286 (47%), Gaps = 2/286 (0%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           R V+  +SL+A          AL++  ++   GL     +   +     + C + +   +
Sbjct: 201 RDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVK 260

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F ++ N ++  WN ++  Y  +  P EA+ ++  M     V P+  +   VL +C  L
Sbjct: 261 EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA-VDPDAISIASVLPACGDL 319

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S+   G +IH ++++  L+ +L + NALI  Y+  G +  A +VF+    RD+VS+ ++I
Sbjct: 320 SALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 379

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y    +   A+ LF +MQD  + PD+  FV++ SAC+       G+ +  ++ +    
Sbjct: 380 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 439

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           V   +     ++++  + G ++ A      M M  +   W +++S 
Sbjct: 440 V-PRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 484



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           + + K+LH +   +     N  L   ++  YA CG   +   +F +IPK  K V  FN +
Sbjct: 51  IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPK--KNVVFFNVM 108

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           I     + L   ++ VF+ M   G+ PD  T+  VL A S    +  G Q   +++  G+
Sbjct: 109 IRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL 168

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE---- 536
              +     ++ +  + G L EA  ++  MP   + V W +L+A C   RN +  +    
Sbjct: 169 DLNVFVGNGLISMYGKCGCLVEACRVLDQMPC-RDVVSWNSLVAGCA--RNGQFDDALEV 225

Query: 537 IAGQKLLDLEPDHGAHYVLL 556
               +LL L+PD G    LL
Sbjct: 226 CKEMELLGLKPDAGTMASLL 245


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 350/609 (57%), Gaps = 43/609 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L  C  L+    G  IH  ++      DL ++N L++ Y+  G +  A K+F+   +RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI--GKQF 232
           +V++  LI GY+Q   P  AL L  +M    ++P+ FT  ++  A + +    +  G+Q 
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H +  +      SN+ +  A+++MYA+C                                
Sbjct: 141 HGLCLRY--GYDSNVYVSCAILDMYARCH------------------------------- 167

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
             +E A+ +FD M  ++ VSW A+I+GY++ G   +A  LF  M    + P   T  +VL
Sbjct: 168 -HLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVL 226

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            AC  +G+L+ GK +H   I+   +G  +  F+   ++DMYAK GSI+ A  VF ++ K 
Sbjct: 227 CACASMGSLEQGKWVHALMIK---WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAK- 282

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + V  +NS+++G +QHGLG+ ++  F EM    + P+ +TF+ VL ACSH GL++EG+ 
Sbjct: 283 -RDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRH 341

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           +F+ M  Y ++PQ+ HY  MVDLL R G LD A   I  MP    + +W ALL ACR+H+
Sbjct: 342 YFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHK 401

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N ++G  A + + +L+  +   +VLL N+ A   RW +A +VRK+M +SG++K P  S++
Sbjct: 402 NMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWV 461

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E    +H F+A   +HPQ +EI  M + ++ K+K  GYVP++  V+  +D++E+E  + Y
Sbjct: 462 EMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQY 521

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLALAF L+N+    TIRI KN+RICGDCH AFK +S++  REI+VRD  RFH F  
Sbjct: 522 HSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCD 581

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 582 GACSCEDYW 590



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 202/424 (47%), Gaps = 54/424 (12%)

Query: 14  LLESCKSLKQALQIHGQIVHSGL------NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           LL+ C  L +  +  G+I+H+ L      +  +  + L++ +A  G    L  +R LF +
Sbjct: 21  LLKRCTHLNKLNE--GKIIHALLLNSRFRDDLVMQNTLLNLYAKCG---DLVYARKLFDE 75

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK- 126
           + + ++  W  L+ GYS+ D PQ+AL+L   ML  G+  PN FT   +L + + + S   
Sbjct: 76  MSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGL-KPNQFTLASLLKAASGVGSTDV 134

Query: 127 -SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G Q+H   +++G + ++++  A++  Y+   ++  A  +F+  ++++ VS+N LI GY
Sbjct: 135 LQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGY 194

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +   A  LF  M    ++P  FT+ ++  AC  +     GK  HA++ K     G 
Sbjct: 195 ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK----WGE 250

Query: 246 NML--LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            ++  +   +++MYAK G +  A++VF  +   +   +W+SM++GY              
Sbjct: 251 KLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGY-------------- 295

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                            SQ G    AL+ F +M    I P+++T + VL AC   G LD 
Sbjct: 296 -----------------SQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDE 338

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G R +   ++       I     ++D+  + G +D A+    ++P    T +++ +++  
Sbjct: 339 G-RHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIK-PTAAVWGALLGA 396

Query: 424 LAQH 427
              H
Sbjct: 397 CRMH 400



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 160/323 (49%), Gaps = 10/323 (3%)

Query: 23  QALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMR 81
           Q  Q+HG  +  G + ++  S  ++  +A     + L  ++++F  + + N   WN L+ 
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARC---HHLEEAQLIFDVMVSKNEVSWNALIA 192

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           GY+R     +A  L+++ML +  V P +FT+  VL +CA + S + G  +H  +IK+G +
Sbjct: 193 GYARKGQGDKAFCLFSNMLREN-VKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEK 251

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
              F+ N L+  Y+  G I +A KVF+    RD+VS+N+++ GY+Q      AL  F +M
Sbjct: 252 LVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEM 311

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             + I P+  TF+ + +AC+       G+ +  ++ K    V   +     ++++  + G
Sbjct: 312 LRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKY--NVEPQISHYVTMVDLLGRAG 369

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLFDQMDQRDLVSWTAMIS 318
            ++ A +  S M +  + A W +++        +E    A +   ++D     +   + +
Sbjct: 370 HLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYN 429

Query: 319 GYSQVGGFSQALELFGKMESLGI 341
            Y+  G ++ A ++   M+  G+
Sbjct: 430 IYALAGRWNDAAKVRKMMKESGV 452


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 367/627 (58%), Gaps = 45/627 (7%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           +++ G + P+   +  +L  C  L   K G  +H H++      DL I+N+++  Y+  G
Sbjct: 81  LINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG 140

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQ---VKEPCPALWLFRKMQDSCIQPDAFTFVA 215
            +  A +VF+    +D+V++ ++I GY+Q         AL LF +M    ++P+ F   +
Sbjct: 141 SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSS 200

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           +   C  L     GKQ H   +K       N+ + +++++MYA+C               
Sbjct: 201 LVKCCGFLGSCVDGKQIHGCCWKY--GFQENVFVGSSLVDMYARC--------------- 243

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
                            G++  +R +FD+++ ++ VSW A+ISG+++ G   +AL LF K
Sbjct: 244 -----------------GELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVK 286

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAK 393
           M+  G    E T  A+L +    G+L+ GK LH   +++   G+ +  ++   ++ MYAK
Sbjct: 287 MQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKS---GKKLVGYVGNTLLHMYAK 343

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL-MGLKPDGVTF 452
            G+I  A  VF ++ K +  VS  NS++ G AQHGLG+ ++ +F EM L + ++P+ +TF
Sbjct: 344 SGNICDAKKVFDRLVK-VDVVSC-NSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITF 401

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           ++VL ACSH GL++EG  +FE M  YG++P++ HY  +VDL  R G LD+A   I+ MP 
Sbjct: 402 LSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPI 461

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           + N+ IW ALL A ++H+N ++G  A QK+L+L+P +   + LLSN+ A   +W++  +V
Sbjct: 462 EPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKV 521

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           RK M DSG++K P  S++E   ++H F A+  SHPQ  ++  M +++  K+K  GYVP+T
Sbjct: 522 RKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDT 581

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
             V   VD++EKE  + YHSEKLALAF L+N++    IRI KN+R+CGDCH A K +S +
Sbjct: 582 SHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLV 641

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +REI+VRD  RFH F+ G+CSC D+W
Sbjct: 642 VKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 208/445 (46%), Gaps = 56/445 (12%)

Query: 14  LLESCK---SLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+ C     LKQ   +H  +++S   N  +  + ++  +A  G    L  +R +F ++ 
Sbjct: 97  LLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG---SLEIARQVFDEMC 153

Query: 70  NPNIFIWNTLMRGYSR---SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
             ++  W +++ GYS+   + S   ALVL+  M+  G+  PN F    ++  C  L S  
Sbjct: 154 VKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL-RPNEFALSSLVKCCGFLGSCV 212

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G QIH    K+G + ++F+ ++L+  Y+  G +  +  VF+   +++ VS+N LI+G+A
Sbjct: 213 DGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFA 272

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN----LGC 242
           +  E   AL LF KMQ        FT+ A+  + +       GK  HA + K+    +G 
Sbjct: 273 RKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGY 332

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           VG+ +L      +MYAK G +  A++VF  + +     + +SM+ GY + G  + A +LF
Sbjct: 333 VGNTLL------HMYAKSGNICDAKKVFDRL-VKVDVVSCNSMLIGYAQHGLGKEAVELF 385

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++M                              M  + I P+++T ++VL AC   G LD
Sbjct: 386 EEM------------------------------MLWVEIEPNDITFLSVLTACSHAGLLD 415

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G   + + ++       +   T V+D++ + G +D A S   ++P      +++ +++ 
Sbjct: 416 EG-LYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIE-PNATIWGALLG 473

Query: 423 GLAQHGLGETSIAVFREMELMGLKP 447
               H    T +  +   +++ L P
Sbjct: 474 ASKMH--KNTEMGAYAAQKVLELDP 496



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILF 65
           +S+LL    +  SL+Q   +H  ++ SG  L  ++ ++ L+  +A SG    +  ++ +F
Sbjct: 299 YSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNT-LLHMYAKSG---NICDAKKVF 354

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   ++   N+++ GY++    +EA+ L+  M+    + PN+ TF  VL +C+     
Sbjct: 355 DRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLL 414

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
             G      + K+GLE  L     ++  +   G ++ A    E
Sbjct: 415 DEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIE 457


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 360/610 (59%), Gaps = 23/610 (3%)

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLARDL 175
           C  L+  K   Q+H HI +  L    ++   L+ F +   +I      H +F    + + 
Sbjct: 21  CTTLNHAK---QLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNP 77

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
             Y+ LI  YA+      ++ L+  M ++ + P +FTF A+FS    L +P +G Q H  
Sbjct: 78  FLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNPSLGSQLH-- 132

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           ++  L    +++ +   +I+MY K G+++ A +VF  M   +    W+ +I  Y R G +
Sbjct: 133 LHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMP-HRDVVTWTELIVAYARSGDM 191

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           + A +LF  +  +D+V+WT+M++GYSQ     +AL+ F KM   G+  DE+T+V  + AC
Sbjct: 192 DSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISAC 251

Query: 356 VGLGALDFGKRLHQQYIENVVFGR--NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
             LG   +   + ++  E+  FG   N+F+ +A+IDMY+KCG+++ A +VF    K +K 
Sbjct: 252 AQLGVSGYADWI-REIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVF----KGMKE 306

Query: 414 VSLFN--SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           +++F+  S+I G A HG   ++I +F EM   G+KP+ VTFV +  ACSH G+VE+G+Q 
Sbjct: 307 MNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQL 366

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F +M   YG+ P  +HY CM DLL R G L++A  L+Q+MP + N  +W ALL A  +H 
Sbjct: 367 FGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHG 426

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N  + EIA + L +LEPD+  +Y+LLS   A   +W++  +VRKLM +  ++K PG S++
Sbjct: 427 NPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWV 486

Query: 591 E-HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           E  NG +H F A    HP+  EI+  L D+  +LK  GY P    V +D+D+E K  ++ 
Sbjct: 487 EAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLV 546

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
            HSEKLALA+GL+++ +  TI+I KNLRIC DCH+     S++  R+I+VRD +RFH F 
Sbjct: 547 SHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFL 606

Query: 710 KGNCSCMDFW 719
            G CSC +FW
Sbjct: 607 NGACSCNNFW 616



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 180/378 (47%), Gaps = 46/378 (12%)

Query: 5   VLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNGLFRS 61
           VLE  ++  +   C +L  A Q+H  I  + L  H SS   + L+ F             
Sbjct: 8   VLEWEAVRIIESHCTTLNHAKQLHAHIYRNNL--HQSSYVITNLLRFITTLPHIPVHTYP 65

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
            +LFSQ+ +PN F+++ L+R Y+R+     ++ LYTSML+   VSP +FTF  +    + 
Sbjct: 66  HLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNN-VSPVSFTFSALF---SL 121

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE------------- 168
           L +   G Q+H H   FG   DL++ N +IH Y  FG ++ A KVF+             
Sbjct: 122 LKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTEL 181

Query: 169 ------------------GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
                             G   +D+V++ +++ GY+Q   P  AL  FRKM+++ +  D 
Sbjct: 182 IVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDE 241

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T V   SAC +L           +   +    GSN+ + +A+I+MY+KCG +  A  VF
Sbjct: 242 ITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVF 301

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGF 326
             M    +  ++SSMI G+   G+   A +LF +M +  +    V++  + +  S  G  
Sbjct: 302 KGM-KEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMV 360

Query: 327 SQALELFGKM-ESLGIHP 343
            Q  +LFG M E  G+ P
Sbjct: 361 EQGQQLFGAMKECYGVSP 378


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 348/594 (58%), Gaps = 41/594 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           Q H  I+K GL  D F  + L+   ++  +G ++ A  +F          +NT++ G+ +
Sbjct: 6   QSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVK 65

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL  +++M +  ++PD FT+  +  AC  L     G Q HA + K LG + +++
Sbjct: 66  DMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILK-LG-LENDV 123

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            ++ ++I+MY KC                                G+I     +F+QM++
Sbjct: 124 FVQNSLISMYGKC--------------------------------GEIGVCCAVFEQMNE 151

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPDEVTMVAVLRACVGLGALDFGKR 366
           R + SW+A+I+ ++ +G +S  L L G M + G    +E  +V+VL AC  LGALD G+ 
Sbjct: 152 RSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRS 211

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   + NV  G N+ + T++I+MY KCG +   + +F K+ K  K    ++ +ISGLA 
Sbjct: 212 VHGFLLRNVS-GLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLS--YSVMISGLAM 268

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQME 485
           HG G   + +F EM   GL+PD + +V VL ACSH GLV+EG Q F  M L +GI+P ++
Sbjct: 269 HGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQ 328

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDL+ R G++DEA  LI+SMP + N V+WR+LL+A ++H N + GEIA ++L  L
Sbjct: 329 HYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL 388

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           +    + YV+LSNM A+  RWE+  + R  M   G+ + PG+S +E    +HRF++    
Sbjct: 389 DSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAG 448

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQ++ +  ML  M  +LK  GY P+T QV+ DVDEEEK+  +S HS+KLA+A+ LI++ 
Sbjct: 449 HPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTS 508

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               +RI +NLR+C DCH   KL+S I+ REI VRD  RFH FK G CSC D+W
Sbjct: 509 QGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 194/404 (48%), Gaps = 39/404 (9%)

Query: 26  QIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q H +I+  GL      +S L++  ALS   +  +   I F Q+D P  F +NT+MRG+ 
Sbjct: 6   QSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSI-FRQMDEPGSFZFNTMMRGHV 64

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           +  + +EAL+ Y  M  +G V P+NFT+P +L +CARL + + G Q+H HI+K GLE D+
Sbjct: 65  KDMNTEEALITYKEMAERG-VKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDV 123

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F++N+LI  Y   G I     VFE    R + S++ LI  +A +      L L   M + 
Sbjct: 124 FVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNE 183

Query: 205 CI-QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
              + +    V++ SACT L    +G+  H  + +N+   G N++++T++I MY KCG +
Sbjct: 184 GYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVS--GLNVIVETSLIEMYLKCGXL 241

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
                +F  M   K+  ++S MISG                            + GY + 
Sbjct: 242 YKGMCLFQKMA-KKNKLSYSVMISGLA--------------------------MHGYGRE 274

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G     L +F +M   G+ PD++  V VL AC   G +  G +   +          I  
Sbjct: 275 G-----LRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 329

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
              ++D+  + G ID AL +   +P     V L+ S++S    H
Sbjct: 330 YGCMVDLMGRAGKIDEALELIKSMPMEPNDV-LWRSLLSASKVH 372


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/689 (34%), Positives = 381/689 (55%), Gaps = 47/689 (6%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS--SFKSGC 129
           +  + N ++  Y+R+     A+ ++ S+L+ G + P++++F  +L++   L   S +   
Sbjct: 120 DTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCA 179

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYS-----------------------------IFGYI 160
           Q+ C ++K G    L + NAL+  Y                              + GY+
Sbjct: 180 QLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYV 239

Query: 161 NN-----AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
                  A  VFE    +  V +N +I+GY        A  LFR+M    +  D FTF +
Sbjct: 240 RRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTS 299

Query: 216 MFSACTELNDPRIGKQFHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + SAC        GK  H  + +   N     + + +  A++ +Y+KCG + +A R+F  
Sbjct: 300 VLSACANAGFFAHGKSVHGQITRLQPNF-VPEAALPVNNALVTLYSKCGNIAVARRIFDN 358

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ-ALE 331
           M  SK   +W++++SGY     +++A ++F++M  ++ +SW  M+SGY   GGFS+ AL+
Sbjct: 359 M-KSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVH-GGFSEDALK 416

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF +M +  + P + T    + AC  LG+L  GK+LH   ++    G N     A+I MY
Sbjct: 417 LFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNS-AGNALITMY 475

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           A+CG++  A  +F  +P N+ +VS +N++IS L QHG G  ++ +F  M   G+ PD ++
Sbjct: 476 ARCGAVKEANLMFLVMP-NIDSVS-WNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 452 FVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+TVL AC+H GLV+EG Q+FESM  ++GI P  +HY  ++DLL R GR+ EA  LI++M
Sbjct: 534 FLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P++    IW A+L+ CR   + ++G  A  +L  + P H   Y+LLSN  +   RW +A 
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAA 653

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VRKLM D G++K PG S+IE    +H F+     HP+  ++   L+ +  +++  GYVP
Sbjct: 654 RVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVP 713

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +T  V+ D++  +KE ++  HSE+LA+ FGL+      T+ + KNLRIC DCH     +S
Sbjct: 714 DTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMS 773

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +   REI+VRD  RFH FK G CSC ++W
Sbjct: 774 KAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 192/428 (44%), Gaps = 48/428 (11%)

Query: 148 NALIHFYSIFGYINNAHKVFEG--SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS- 204
            +L+  Y+  G +  A   F+      RD V +N +I+ YA+     PA+ +FR +  S 
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 205 CIQPDAFTFVAMFSACTELND--PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
            ++PD ++F A+ SA   L +   R   Q    V K+    G  + +  A++ +Y KC  
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKS--GAGGVLSVSNALVALYMKCEA 209

Query: 263 MNM---AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           +     A +V   M   K    W++M+ GY R G +  AR +F+++D +  V W AMISG
Sbjct: 210 LEATRDARKVLDEMP-DKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISG 268

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE---NVV 376
           Y   G   +A ELF +M    +  DE T  +VL AC   G    GK +H Q      N V
Sbjct: 269 YVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFV 328

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH--------- 427
               + +  A++ +Y+KCG+I  A  +F  +    K V  +N+I+SG  +          
Sbjct: 329 PEAALPVNNALVTLYSKCGNIAVARRIFDNMKS--KDVVSWNTILSGYVESSCLDKAVEV 386

Query: 428 ----------------------GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
                                 G  E ++ +F  M    +KP   T+   + AC   G +
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSL 446

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           + GKQ    ++  G +        ++ + AR G + EA  +   MP + +SV W A+++A
Sbjct: 447 KHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISA 505

Query: 526 CRLHRNAK 533
              H + +
Sbjct: 506 LGQHGHGR 513



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 205/464 (44%), Gaps = 84/464 (18%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++D     +WN ++ GY  S    EA  L+  M+ +  V  + FTF  VL++CA
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLER-VPLDEFTFTSVLSACA 305

Query: 121 RLSSFKSGCQIHCHIIK----FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
               F  G  +H  I +    F  E  L + NAL+  YS  G I  A ++F+   ++D+V
Sbjct: 306 NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVV 365

Query: 177 SYNTLINGY---------AQVKEPCP----------------------ALWLFRKMQDSC 205
           S+NT+++GY          +V E  P                      AL LF +M+   
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED 425

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P  +T+    SAC EL   + GKQ H  + + LG  GSN     A+I MYA+CG +  
Sbjct: 426 VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQ-LGFEGSNS-AGNALITMYARCGAVKE 483

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A  +F  M    S  +W++MIS   + G    A +LFD                      
Sbjct: 484 ANLMFLVMPNIDSV-SWNAMISALGQHGHGREALELFD---------------------- 520

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN------VVFGR 379
                    +M + GI+PD ++ + VL AC   G +D G     QY E+      ++ G 
Sbjct: 521 ---------RMVAEGIYPDRISFLTVLTACNHSGLVDEG----FQYFESMKRDFGIIPGE 567

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
           + +  T +ID+  + G I  A  +   +P    T S++ +I+SG    G  E       +
Sbjct: 568 DHY--TRLIDLLGRAGRIGEARDLIKTMPFE-PTPSIWEAILSGCRTSGDMELGAHAADQ 624

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           +  M  + DG T++ +    S  G   +  +  + M + G+K +
Sbjct: 625 LFKMTPQHDG-TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKE 667



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 157/339 (46%), Gaps = 15/339 (4%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +++L+ L   C ++  A +I   +    +   +S + ++S +  S C   L ++  +F +
Sbjct: 336 NNALVTLYSKCGNIAVARRIFDNMKSKDV---VSWNTILSGYVESSC---LDKAVEVFEE 389

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N   W  ++ GY      ++AL L+  M ++  V P ++T+   +++C  L S K 
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED-VKPCDYTYAGAISACGELGSLKH 448

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H H+++ G E      NALI  Y+  G +  A+ +F      D VS+N +I+   Q
Sbjct: 449 GKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQ 508

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV-GSN 246
                 AL LF +M    I PD  +F+ + +AC        G Q+   + ++ G + G +
Sbjct: 509 HGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGED 568

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLF 302
               T +I++  + G +  A  +  TM    + + W +++SG    G +E     A QLF
Sbjct: 569 HY--TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF 626

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
               Q D  ++  + + YS  G +  A  +   M   G+
Sbjct: 627 KMTPQHD-GTYILLSNTYSAAGRWVDAARVRKLMRDRGV 664


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 360/607 (59%), Gaps = 9/607 (1%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L  C +  +  +  +IH  I+K GL     + N L+  Y     + +AH +F+    RD 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           VS+ +++  Y Q K P   L +F  M     +QPD F +  +  AC  L   R+GKQ HA
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
                L     + ++K+++++MYAKCGL ++A  VF ++ + K++ +W++M+SGY R G 
Sbjct: 129 RFV--LSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSI-LVKTSVSWTAMLSGYARSGL 185

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVAVLR 353
            + A +LF +   R+L SWTA+ISG  Q G       +F +M   G+   D + + +V+ 
Sbjct: 186 KDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVG 245

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  L  L  GK++H   I +  +   +F++ A++DMYAKC  I  A +VF ++    + 
Sbjct: 246 ACANLAVLGLGKQIHGLVIGSG-YESCLFISNALVDMYAKCSDILAARNVFNRMLH--RD 302

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + SII G AQHG  + ++ ++ +M L  +KP+ VTFV ++ ACSH GLV +G++ F+
Sbjct: 303 VVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFK 362

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           +M+ +Y I P ++ + C +DLL+R G L+EA  LI++MP+  +   W ALL+AC+ H N 
Sbjct: 363 AMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNT 422

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G     +LL L     + YVLLSN+ A   +WE+  +VRKLM D  +++ PG+S I+ 
Sbjct: 423 EMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDL 482

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
                 F A +  HP   EI  +LK++  +++  GY+P+T  V+ D++E+EKE  + +HS
Sbjct: 483 GKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHS 542

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+ A+A+GL+ +     IRI KNLRICGDCH   KL S I  +EI+VRDA R+H FK G 
Sbjct: 543 ERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGR 602

Query: 713 CSCMDFW 719
           CSC DFW
Sbjct: 603 CSCNDFW 609



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 204/493 (41%), Gaps = 116/493 (23%)

Query: 23  QALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
            A +IH QIV SGLN    + ++ L ++    G  N L  +  LF ++   +   W +++
Sbjct: 20  NAKKIHAQIVKSGLNQCQPLPNTLLDAY----GKCNLLQDAHYLFDEMPQRDHVSWASIL 75

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
             Y+++  P + L ++  M +   + P++F +  +L +CA L S + G Q+H   +    
Sbjct: 76  TAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPF 135

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ-----------VK 189
             D  ++++L+  Y+  G  + A  VF+  L +  VS+  +++GYA+           ++
Sbjct: 136 VDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLR 195

Query: 190 EPCPALWLFRKMQDSCIQP---------------------DAFTFVAMFSACTELNDPRI 228
            P   L+ +  +    +Q                      D     ++  AC  L    +
Sbjct: 196 TPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGL 255

Query: 229 GKQFHAVVYKNLGCVGSN----MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           GKQ H +V      +GS     + +  A+++MYAKC  +  A  VF+ M + +   +W+S
Sbjct: 256 GKQIHGLV------IGSGYESCLFISNALVDMYAKCSDILAARNVFNRM-LHRDVVSWTS 308

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I G  + G+ + A  L+DQM   +                               I P+
Sbjct: 309 IIVGAAQHGRAKEALDLYDQMVLAE-------------------------------IKPN 337

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           EVT V ++ AC   G +  G++L +  IE+     ++ L T  +D+ ++ G ++ A  + 
Sbjct: 338 EVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLI 397

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +P                                     KPD  T+  +L AC H G 
Sbjct: 398 KTMPH------------------------------------KPDEPTWAALLSACKHHGN 421

Query: 465 VEEGKQFFESMLN 477
            E G +  + +L+
Sbjct: 422 TEMGVRIADRLLS 434



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + ++S +A SG K+       LF +    N++ W  L+ G  +S    +   ++  M
Sbjct: 171 VSWTAMLSGYARSGLKDEAME---LFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEM 227

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
             +G+   +      V+ +CA L+    G QIH  +I  G E  LFI NAL+  Y+    
Sbjct: 228 RREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSD 287

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           I  A  VF   L RD+VS+ ++I G AQ      AL L+ +M  + I+P+  TFV +  A
Sbjct: 288 ILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYA 347

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C+       G++    + ++   +  ++ L T  +++ ++ G +N AE +  TM      
Sbjct: 348 CSHAGLVSKGRKLFKAMIEDYR-ISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDE 406

Query: 280 AAWSSMISGYTREGKIERARQLFDQ---MDQRDLVSWTAMISGYSQVGGFSQ 328
             W++++S     G  E   ++ D+   ++  +  ++  + + Y+  G + Q
Sbjct: 407 PTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQ 458


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/786 (33%), Positives = 420/786 (53%), Gaps = 86/786 (10%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS------SSQLISFFALSGCKNGLF 59
           +E  + +ALL  C+  + A +  G  VHS ++  ++       + L+S F   G    L 
Sbjct: 92  VEEETYIALLRLCEWKRAASE--GSRVHSYVSKTVTRLGVRLGNALLSMFVRFG---DLV 146

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +  +F ++   ++F WN L+ GY+++    EAL LY  ML  GI  P+ +TFP VL +C
Sbjct: 147 EAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI-RPDVYTFPCVLRTC 205

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
             L     G ++H H+I++G E D+ + NALI  Y   G I +A  VF+    RD +S+N
Sbjct: 206 GGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWN 265

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK- 238
            +I+GY +       L LF  M++  + PD  T  ++ SAC  L D R+G++ H  V K 
Sbjct: 266 AMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT 325

Query: 239 -----------------NLGC------VGSNMLLK-----TAVINMYAKCGLMNMAERVF 270
                            ++GC      V S M  K     TA+I+ Y K GL   A   +
Sbjct: 326 GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETY 385

Query: 271 STM--------------------------------------GMSKSTAAWSSMISGYTRE 292
           + M                                      G++      +S+I  Y++ 
Sbjct: 386 TIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC 445

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
             I++A ++F ++  ++++SWT++I G        +AL  F +M  L + P+ VT+V+VL
Sbjct: 446 RCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVL 504

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  +GAL  GK +H   +   + G + FL  A++DMY +CG ++ A + F    K+  
Sbjct: 505 SACARIGALSCGKEIHAHALRTGL-GFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKD-- 561

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V+ +N +++G AQ G G  ++ +F +M    + PD +TF ++LCACS  G+V +G ++F
Sbjct: 562 -VASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYF 620

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           ESM + + I P ++HY  +VDLL R GRL++AY  I+ MP D +  IW ALL ACR+++N
Sbjct: 621 ESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQN 680

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++GE+A Q + +++     +Y+LL N+ A++ +W+E  +VRK+M ++ +   PG S++E
Sbjct: 681 VELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVE 740

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
             G +H FL     HPQ KEI  +L+    K+++ G   +      D+D  + E +   H
Sbjct: 741 VAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAE-IFCGH 799

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+AFGLIN+     I +TKNL +C +CH   K +S++ RR I VRD  +FH FK G
Sbjct: 800 SERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDG 859

Query: 712 NCSCMD 717
            CSC D
Sbjct: 860 VCSCGD 865



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/526 (28%), Positives = 232/526 (44%), Gaps = 85/526 (16%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           NPN  I    ++G       ++AL+   SM  +  VS    T+  +L  C    +   G 
Sbjct: 61  NPNSLILELCLKG-----DLEKALIHLDSM-QELQVSVEEETYIALLRLCEWKRAASEGS 114

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++H ++ K      + + NAL+  +  FG +  A  VF     RDL S+N L+ GYA+  
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAG 174

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL L+ +M    I+PD +TF  +   C  L D   G++ H  V +      S++ +
Sbjct: 175 YFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY--GFESDVDV 232

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-- 307
             A+I MY KCG +  A  VF  M   +   +W++MISGY          +LF  M +  
Sbjct: 233 VNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMISGYFENDVCLEGLRLFFMMREFF 291

Query: 308 --RDLVSWTAMIS---------------GY--------------------SQVGGFSQAL 330
              DL++ T++IS               GY                    S VG + +A 
Sbjct: 292 VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAE 351

Query: 331 ELFGKM-------------------------------ESLGIHPDEVTMVAVLRACVGLG 359
            +F KM                               E  G+ PDE+T+ +VL AC GLG
Sbjct: 352 MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG 411

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            LD G  LH ++ +       + +  ++IDMY+KC  ID AL VF++IP   K V  + S
Sbjct: 412 LLDKGIMLH-EFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN--KNVISWTS 468

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           II GL  +     ++  F++M ++ LKP+ VT V+VL AC+  G +  GK+     L  G
Sbjct: 469 IILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +         ++D+  R GR++ A+    S   D  S  W  LL  
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILLTG 571


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 345/563 (61%), Gaps = 9/563 (1%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  I +P+  ++NT+ R Y  SD P+EAL L+  ML +G++ PN FT PFV+ +C R  
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVL-PNEFTLPFVVKACTRAQ 59

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           ++ +   +H   +K G    +F+ NAL+H Y+  G + ++ + F+    R++VS+N++I 
Sbjct: 60  AWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIG 119

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ  +   A  LF +M+      D FT  ++  AC++  +   G+  H ++  +   V
Sbjct: 120 GYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPV 179

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +++L  A+++MY+KCG + MA R F  M + KS  +W+SM+   T+ G ++ AR  FD
Sbjct: 180 --DLILGGALVDMYSKCGDLCMARRCFEMMPI-KSVVSWTSMLCAQTKHGSVDAARCWFD 236

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M +R+ VSW  MIS Y Q G + +AL+L+ +M+S G  PDE T+V VL AC  +G L  
Sbjct: 237 HMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTV 296

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H  YI + +   +I L  +++DMYAKCG +DTA+ +F ++    + V  +N II G
Sbjct: 297 GKMVHL-YIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCN--RNVVSWNVIIGG 353

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
           LA HG    +I  FR M +    PDG+TFV +L +CSHGGL+E G+ +FESM + Y +K 
Sbjct: 354 LAMHGRALDAITFFRSM-VRNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKH 412

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           ++EHY CMVDLL R G L++A  LI+ MP   + V+W ALL ACR+H N KIG+   ++L
Sbjct: 413 EVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQL 472

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           L+LE   G  +VL+SN+L ET +WE+ +++RKLM + G +K  G S IE N ++H F   
Sbjct: 473 LELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVE 532

Query: 603 KKSHPQTKEIELMLKDMTMKLKS 625
              H  + EI  ++  ++  L S
Sbjct: 533 DIRHESSSEIYAVVDQLSYHLIS 555



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 227/512 (44%), Gaps = 111/512 (21%)

Query: 1   MKRLVLEHS-SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCK 55
           ++R VL +  +L  ++++C   ++   AL +HG  +  G    +  ++ L+  +A +G  
Sbjct: 37  LRRGVLPNEFTLPFVVKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAG-- 94

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             L  SR  F ++   N+  WN+++ GY+++   +EA  L+  M  +G +  + FT   +
Sbjct: 95  -SLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLG-DEFTLASL 152

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE------- 168
           L +C++  + + G  +HC ++  G   DL +  AL+  YS  G +  A + FE       
Sbjct: 153 LLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSV 212

Query: 169 -------------GSL-----------ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
                        GS+            R+ VS+NT+I+ Y Q  +   AL L+++MQ  
Sbjct: 213 VSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSH 272

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
              PD  T V + SAC  + D  +GK  H  +  N+     ++ L  ++++MYAKCG ++
Sbjct: 273 GPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIH--NPDISLINSLLDMYAKCGQVD 330

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            A R+F  M  +++  +W+ +I G    G+   A   F     R +V  T+         
Sbjct: 331 TAIRLFREM-CNRNVVSWNVIIGGLAMHGRALDAITFF-----RSMVRNTS--------- 375

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
                             PD +T VA+L +C   G L+ G    Q Y E++   R+++  
Sbjct: 376 ------------------PDGITFVALLSSCSHGGLLETG----QHYFESM---RHVYNV 410

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
              ++ YA                           ++  L + G  E ++ + +EM    
Sbjct: 411 KHEVEHYA--------------------------CMVDLLGRRGHLEKAVCLIKEMP--- 441

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +KPD V +  +L AC   G V+ GKQ  + +L
Sbjct: 442 MKPDVVVWGALLGACRIHGNVKIGKQVIKQLL 473



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 3/252 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F  +   N   WNT++  Y +     EAL LY  M S G  +P+  T   VL++C 
Sbjct: 231 ARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHG-PAPDEATLVPVLSACG 289

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           R+     G  +H +I       D+ + N+L+  Y+  G ++ A ++F     R++VS+N 
Sbjct: 290 RIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNV 349

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G A       A+  FR M  +   PD  TFVA+ S+C+       G+ +   + +++
Sbjct: 350 IIGGLAMHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESM-RHV 407

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             V   +     ++++  + G +  A  +   M M      W +++      G ++  +Q
Sbjct: 408 YNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQ 467

Query: 301 LFDQMDQRDLVS 312
           +  Q+ + + +S
Sbjct: 468 VIKQLLELEGIS 479


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 397/721 (55%), Gaps = 51/721 (7%)

Query: 7   EHSSLLALLESCKSLKQA---LQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           ++ +L+ LL     L+     +QIH  ++  G  +++   + L+  +  + C   L+ + 
Sbjct: 139 DYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHC---LYLAS 195

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF  + N +   +N+LM GYS     +EA+ L+  + + GI  P++FTF  +L++   L
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGI-KPSDFTFAALLSAAVGL 254

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              K G Q+H  ++K    +++F+ NAL+ +YS    ++   K+F      D +SYN +I
Sbjct: 255 DDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVI 314

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             YA   +   +  LFRK+Q +      F F  + S  T   + R+G+Q H         
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI----T 370

Query: 243 VGSNM--LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           VG+N    ++ A+++MYAKC                                G  E A++
Sbjct: 371 VGANFESRVENALVDMYAKCN-------------------------------GDKE-AQK 398

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +FD +  +  V WTAMIS Y Q G   + + +F  M   G+  D+ T  ++LRAC  L +
Sbjct: 399 IFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLAS 458

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +  G++LH   I +  F  N++  +A++D YAKCG +  A+  F ++P+   +VS +N++
Sbjct: 459 ISLGRQLHSLLIRSG-FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPER-NSVS-WNAL 515

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           IS  AQ+G  + ++  F++M   G KPD V+F++VL ACSH G VEE    F SM   Y 
Sbjct: 516 ISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYE 575

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P+ EHY  MVD+L R+GR DEA  L+  MP++ + ++W ++L +CR+H+N ++ + A 
Sbjct: 576 VTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAA 635

Query: 540 QKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +L ++E     A Y+ +SN+ A   +W+   +V+K M D G++K P +S++E     H 
Sbjct: 636 DRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHV 695

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F A+ KSHP+ K+I   +  ++ +++  GY P+T   + DVDE  K   + YHSE+ A+A
Sbjct: 696 FSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIA 755

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           F L+N+     I + KNLR C DCH A K++S+I  REI+VRD+ RFH FK G CSC D+
Sbjct: 756 FALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDY 815

Query: 719 W 719
           W
Sbjct: 816 W 816



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 219/470 (46%), Gaps = 43/470 (9%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L ++R LF  +       W  L+ GY +S+  +EA  LY  M  +G + P+  T   +L+
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADM-RRGGIEPDYVTLVTLLS 148

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
               L +     QIH H+IK G E++L + N+L+  Y     +  A ++F+  L +D V+
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N+L+ GY+       A+ LF ++ +S I+P  FTF A+ SA   L+D + G+Q H  V 
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K      +N +    V N                            +++  Y++  +++ 
Sbjct: 269 K------TNFVWNVFVGN----------------------------ALLDYYSKHDQVDE 294

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
             +LF +M + D +S+  +I+ Y+  G F ++ +LF K++       +     +L     
Sbjct: 295 VGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATS 354

Query: 358 LGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              L  G+++H Q I     G N    +  A++DMYAKC     A  +F  I    K+  
Sbjct: 355 SLNLRMGRQIHCQAI---TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIA--CKSTV 409

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++IS   Q G  E  I VF +M   G+  D  TF ++L AC++   +  G+Q    +
Sbjct: 410 PWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLL 469

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +  G    +     ++D  A+ G + +A      MP + NSV W AL++A
Sbjct: 470 IRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALISA 518



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 192/440 (43%), Gaps = 69/440 (15%)

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV---------- 166
           NS A   S  S   I  HI+K G   +    N  ++ +   G + +AH+V          
Sbjct: 16  NSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTI 75

Query: 167 ---------------------FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
                                F+G + R  VS+  LI GY Q  +   A  L+  M+   
Sbjct: 76  SLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGG 135

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           I+PD  T V + S   EL    +  Q H  V K LG    N+++  ++++ Y K   + +
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIK-LG-YEYNLMVCNSLVDAYCKTHCLYL 193

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A ++F  M ++K T  ++S+++GY+ EG  E                             
Sbjct: 194 ASQLFKHM-LNKDTVTFNSLMTGYSNEGLNE----------------------------- 223

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +A+ELF ++ + GI P + T  A+L A VGL    FG+++H  ++    F  N+F+  
Sbjct: 224 --EAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVH-GFVLKTNFVWNVFVGN 280

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++D Y+K   +D    +F ++P+ L  +S +N +I+  A +G  + S  +FR+++    
Sbjct: 281 ALLDYYSKHDQVDEVGKLFXEMPE-LDGIS-YNVVITSYAWNGQFKESFDLFRKLQFTRF 338

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
                 F T+L   +    +  G+Q     +  G   +      +VD+ A+     EA  
Sbjct: 339 DRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQK 398

Query: 506 LIQSMPYDANSVIWRALLAA 525
           +  ++   + +V W A+++A
Sbjct: 399 IFDNIACKS-TVPWTAMISA 417


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 354/595 (59%), Gaps = 13/595 (2%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LIS    SG  +   R   LF  +  P+   WN+++ G+++ D  +E+L  +  M  +
Sbjct: 85  NSLISVLTKSGFLDEAAR---LFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHRE 141

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             +  N ++F   L++CA L     G Q+H  + K     D+++ +ALI  YS  G +  
Sbjct: 142 DFL-LNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVAC 200

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF G + R+LV++N+LI  Y Q      AL +F +M DS ++PD  T  ++ SAC  
Sbjct: 201 AEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACAS 260

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L   + G Q HA V K       +++L  A+++MYAKC  +N A RVF  M + ++  + 
Sbjct: 261 LCALKEGLQIHARVVKT-NKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI-RNVVSE 318

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +SM+SGY R   ++ AR +F +M QR++VSW A+I+GY+Q G   +AL LF  ++   I 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV-----FGRNIFLTTAVIDMYAKCGSI 397
           P   T   +L AC  L  L  G++ H   ++           +IF+  ++IDMY KCGSI
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           +    VF K+ K    VS +N+II G AQ+G G  ++ +FR+M + G KPD VT + VLC
Sbjct: 439 EDGSRVFEKM-KERDCVS-WNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLC 496

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           ACSH GLVEEG+ +F SM  +G+ P  +HY CMVDLL R G L+EA  LI++MP + ++V
Sbjct: 497 ACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAV 556

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W +LLAAC++H N ++G+ A +KLL+++P +   YVLLSNM AE  RW +  +VRKLM 
Sbjct: 557 VWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMR 616

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
             G+ K PG S+IE    +H FL   KSHP  K+I  +LK +T ++K  GY+P+ 
Sbjct: 617 QQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDA 671



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 222/490 (45%), Gaps = 101/490 (20%)

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           L + +  PN+  F  +L+SC R  S +    +H  I+      ++FI+N LI  Y     
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 160 INNAHKVFE------------------------------GSLAR-DLVSYNTLINGYAQV 188
           +++A K+F+                              GS+   D  S+N++++G+AQ 
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                +L  F KM       + ++F +  SAC  L D  +G Q HA+V K+     +++ 
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR--YSTDVY 183

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + +A+I+MY+KCG +  AE VFS M + ++   W+S+I+ Y                   
Sbjct: 184 MGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCY------------------- 223

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                        Q G  S+ALE+F +M   G+ PDEVT+ +V+ AC  L AL  G ++H
Sbjct: 224 ------------EQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIH 271

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL---------------- 411
            + ++   F  ++ L  A++DMYAKC  ++ A  VF ++  +N+                
Sbjct: 272 ARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASV 331

Query: 412 ------------KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
                       + V  +N++I+G  Q+G  E ++ +FR ++   + P   TF  +L AC
Sbjct: 332 KAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSAC 391

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHY------GCMVDLLARDGRLDEAYGLIQSMPYD 513
           ++   +  G+Q    +L  G + Q            ++D+  + G +++   + + M  +
Sbjct: 392 ANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-E 450

Query: 514 ANSVIWRALL 523
            + V W A++
Sbjct: 451 RDCVSWNAII 460


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/776 (32%), Positives = 412/776 (53%), Gaps = 100/776 (12%)

Query: 7   EHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H +L   L++C    S +     HG I  +G   ++   + L++ ++ SG    L  + 
Sbjct: 148 DHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSG---SLEDAS 204

Query: 63  ILFSQIDNP---NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN-----FTFPF 114
           ++F +I      ++  WN+++  + +  +P+ AL L++ M +       N      +   
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVN 264

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L +CA L +     +IH + I+ G   D F+ NALI  Y+  G + +A  VF     +D
Sbjct: 265 ILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKD 324

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCI---------------------------- 206
           +VS+N ++ GY Q  +   A  LF+ M+   I                            
Sbjct: 325 VVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQ 384

Query: 207 -------QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS------------NM 247
                  +P++ T +++ SAC  L     G + HA   K   C+ S            ++
Sbjct: 385 QMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKK--CLLSLDNDFGGDGDGEDL 442

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++  A+I+MY+KC     A  +F+++                                 +
Sbjct: 443 VVHNALIDMYSKCRSFKAARTIFNSI------------------------------PRRE 472

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMES--LGIHPDEVTMVAVLRACVGLGALDFGK 365
           R++V+WT MI GY+Q G  + AL+LF +M S    + P+  T+  +L AC  L +L  GK
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGK 532

Query: 366 RLHQQYIENVVFGRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           ++H     +  +  ++ F+   +IDMY+KCG +DTA +VF  +PK    VS + S++SG 
Sbjct: 533 QIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKR-NEVS-WTSMMSGY 590

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
             HG G+ ++ +F +M+  G  PD ++F+ +L ACSH G+V++G  +F+ M  +YG+   
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIAS 650

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +HY C++DLLAR GRLD+A+  IQ MP + ++ IW ALL+ACR+H N ++ E A  KL+
Sbjct: 651 AQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLV 710

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            ++ ++   Y L+SN+ A   RW++  ++R+LM  SGI+K PG S+++       F    
Sbjct: 711 SMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGD 770

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +SHP + EI  +L+ +  ++K  GYVP T   + DVD+EEK  +++ HSEKLALA+GL+ 
Sbjct: 771 RSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLT 830

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +     IRITKNLR+CGDCH AF  +S+I   EI+VRD+ RFH FK G+CSC  +W
Sbjct: 831 TSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 158/571 (27%), Positives = 278/571 (48%), Gaps = 59/571 (10%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGL-----------------NHHISSSQL-----ISFFA 50
           +LL+ C+S+    QIH +I+  GL                 + ++S   L      S+ A
Sbjct: 36  SLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLA 95

Query: 51  LSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
                + L    +L   + +P ++ WN L+R +        A+ +   ML  G   P++F
Sbjct: 96  CGATSDAL---SVLERVVPSPAVW-WNLLVRAHIEEGRLDRAIGVSCRMLRAG-TKPDHF 150

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           T P+ L +C  L S++SG   H  I   G E ++F+ NAL+  YS  G + +A  VF+  
Sbjct: 151 TLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEI 210

Query: 171 LAR---DLVSYNTLINGYAQVKEPCPALWLFRKM------QDSCIQPDAFTFVAMFSACT 221
             +   D++S+N+++  + +   P  AL LF +M      + +  + D  + V +  AC 
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACA 270

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L      K+ H+   +N     ++  +  A+I+ YAKCG M  A  VF+ M   K   +
Sbjct: 271 SLKALPQTKEIHSYAIRN--GTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEF-KDVVS 327

Query: 282 WSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKME 337
           W++M++GYT+ GK   A +LF  M +     D+++W+A+I+GY+Q G   +AL+ F +M 
Sbjct: 328 WNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI 387

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG-----------RNIFLTTA 386
             G  P+ VT++++L AC  LGAL  G   H   ++  +              ++ +  A
Sbjct: 388 LYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNA 447

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM--ELMG 444
           +IDMY+KC S   A ++F  IP+  + V  +  +I G AQ+G    ++ +F EM  +   
Sbjct: 448 LIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYA 507

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY--GCMVDLLARDGRLDE 502
           + P+  T   +L AC+H   +  GKQ    +  +       ++   C++D+ ++ G +D 
Sbjct: 508 VAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDT 567

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           A  +  SMP   N V W ++++   +H   K
Sbjct: 568 ARNVFDSMP-KRNEVSWTSMMSGYGMHGRGK 597


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 348/611 (56%), Gaps = 50/611 (8%)

Query: 122 LSSFKSGC---------QIHCHIIKFGLEFDLFI---RNALIHFYSI-FGYINNAHKVFE 168
           L SF S C         Q+H H+   G +F L I   R+ L+  Y++  G ++ A   F 
Sbjct: 5   LDSFLSKCTTLSLPHTKQLHAHLFTTG-QFRLPISPARSKLLELYALSLGNLSFAILTFS 63

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
                    +N +I G+ Q   P  A   ++ M     + DA T   +  AC  +     
Sbjct: 64  QIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLE 123

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
             Q H  + +  G + ++ LL T ++++YAK G                           
Sbjct: 124 SIQIHTHIVRK-GFI-ADALLGTTLLDVYAKVG--------------------------- 154

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                +I+ A ++FD+M +RD+ SW A+ISG++Q    ++AL LF +ME  G  P+E+++
Sbjct: 155 -----EIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISV 209

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           +  L AC  LG    G+++H  YI+   F  N  +   VIDMYAKCG +D A  VF  + 
Sbjct: 210 LGALSACAQLGDFKEGEKIHG-YIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMS 268

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              K +  +N++I   A HG G  ++ +F +M+  G+ PD V+++ VLCAC+HGGLVEEG
Sbjct: 269 CR-KDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEG 327

Query: 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            + F SM N G+KP ++HYG +VDLL R GRL EAY ++ SMP   + V+W+ LL A R 
Sbjct: 328 FRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRT 387

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           HRN +I E   +KL+++  +H   +VLLSN+ A   RW +  +VR+ M +  ++K PG S
Sbjct: 388 HRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLS 447

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           YIE NG +H+F  + KSH   +EI   L ++  ++K  GYV  T  V+ D+ EE+KE V+
Sbjct: 448 YIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVL 507

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
            +HSEKLA+AFGLI++     I++ KNLRICGDCH   KL+S+IY REI+VRD +RFH F
Sbjct: 508 GHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRF 567

Query: 709 KKGNCSCMDFW 719
           K+G CSC D+W
Sbjct: 568 KEGFCSCRDYW 578



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 216/441 (48%), Gaps = 43/441 (9%)

Query: 9   SSLLALLESCK--SLKQALQIHGQIVHSG---LNHHISSSQLISFFALSGCKNGLFRSRI 63
           SSL + L  C   SL    Q+H  +  +G   L    + S+L+  +ALS     L  + +
Sbjct: 3   SSLDSFLSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALS--LGNLSFAIL 60

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            FSQI  P+   WN ++RG+ +S +P  A   Y SM+SK     +  T  FVL +CAR+ 
Sbjct: 61  TFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKS-RKVDALTCSFVLKACARVL 119

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +     QIH HI++ G   D  +   L+  Y+  G I++A KVF+  + RD+ S+N LI+
Sbjct: 120 ARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALIS 179

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ  +P  AL LF++M+    +P+  + +   SAC +L D + G++ H   Y  +   
Sbjct: 180 GFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHG--YIKVERF 237

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N  +   VI+MYAKCG ++ A  VF +M   K    W++MI  +   G+  +A +LF+
Sbjct: 238 DMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFE 297

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +MDQ                                G+ PD+V+ +AVL AC   G ++ 
Sbjct: 298 KMDQS-------------------------------GVSPDDVSYLAVLCACNHGGLVEE 326

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G RL    +EN     N+    +V+D+  + G +  A  +   +P  +  + L+ +++  
Sbjct: 327 GFRLFNS-MENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMP-TVPDIVLWQTLLGA 384

Query: 424 LAQHGLGETSIAVFREMELMG 444
              H   E +  V R++  MG
Sbjct: 385 SRTHRNVEIAETVSRKLVEMG 405


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 393/713 (55%), Gaps = 47/713 (6%)

Query: 12  LALLESCKSL---KQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +A+L+ C  L       ++H  ++  G   +I  + L+  +A  G  +   R   +F QI
Sbjct: 271 VAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALR---VFGQI 327

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +   WN+++  Y ++    EA+  +  ML  G   P++     + ++   LS   +G
Sbjct: 328 AEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGF-QPDHACVVSLSSALGHLSRLNNG 386

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            + H + IK  L  DL + N L+  Y   G I  + KVFE    RD +S+ T++  +AQ 
Sbjct: 387 REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQS 446

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL +  ++Q   I  D+    ++   C  L    + KQ H    +N G +  +++
Sbjct: 447 SRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRN-GLL--DLI 503

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L+  +I++Y +CG                                + + +  LF +++++
Sbjct: 504 LENRLIDIYGECG--------------------------------EFDHSLNLFQRVEKK 531

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D+VSWT+MI+  +  G  + A+ LF +M+   I PD V +V++L A  GL +L  GK++H
Sbjct: 532 DIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVH 591

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              I    F     + ++++DMY+ CGS++ A+ VF +     K V L+ ++I+    HG
Sbjct: 592 GFLIRRN-FPIEGPVVSSLVDMYSGCGSMNYAIRVFER--AKCKDVVLWTAMINATGMHG 648

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
            G+ +I +F+ M   GL PD V+F+ +L ACSH  LVEEGK + + M++ Y +KP  EHY
Sbjct: 649 HGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHY 708

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C+VD+L R G+ +EAY  I++MP D  S +W ALL ACR+HRN  +  +A  KLL+LEP
Sbjct: 709 ACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEP 768

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           D+  +Y+L+SN+ AE  +W  A++ R  M + G++K P  S+IE    +H F +    H 
Sbjct: 769 DNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHR 828

Query: 608 QTKEIELMLKDMT-MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            ++ I L L ++T M  +  GYV +T  V+ D  EEEK  ++  HSE++A+AFGLI++R 
Sbjct: 829 DSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRP 888

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IRI KNLR+CGDCH   KL+S+++ R+I+VRDA RFH F  G+CSC DFW
Sbjct: 889 GMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 168/697 (24%), Positives = 300/697 (43%), Gaps = 102/697 (14%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L L+ + ++  +  Q+H   V +G LN             + G    +  +R LF+ + 
Sbjct: 63  VLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMP 122

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI--VSPNNFTFPFVLNSCARLSSFKS 127
              +F WN L+  Y  S S  EA+ +Y +M +      +P+  T   VL +C      + 
Sbjct: 123 ARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRC 182

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGY 185
           G ++H   +K GL+    + NALI  Y+  G +++A +VFE     ARD+ S+N++++G 
Sbjct: 183 GGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGC 242

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q      AL LFR MQ +    +++T VA+   C EL    +G++ HA + K     GS
Sbjct: 243 VQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLK----CGS 298

Query: 246 NMLLK-TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            + ++  A++ MYAK G ++ A RVF  +   K   +W+SM+S Y +      A   F +
Sbjct: 299 ELNIQCNALLVMYAKYGRVDSALRVFGQIA-EKDYISWNSMLSCYVQNSFYAEAIDFFGE 357

Query: 305 MDQR---------------------------------------DLVSWTAMISGYSQVGG 325
           M Q                                        DL     ++  Y + G 
Sbjct: 358 MLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGS 417

Query: 326 FSQALELFGKMESLGI------------------HPDEVTMV----------------AV 351
              + ++F   ES+GI                  H + + M+                ++
Sbjct: 418 IECSAKVF---ESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSI 474

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L  C GL ++   K++H   I N +   ++ L   +ID+Y +CG  D +L++F ++ K  
Sbjct: 475 LETCCGLKSISLLKQVHCYAIRNGLL--DLILENRLIDIYGECGEFDHSLNLFQRVEK-- 530

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K +  + S+I+    +G    ++ +F EM+   ++PD V  V++L A +    + +GKQ 
Sbjct: 531 KDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQV 590

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
              ++      +      +VD+ +  G ++ A  + +      + V+W A++ A  +H +
Sbjct: 591 HGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHGH 649

Query: 532 AKIGEIAGQKLLD--LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            K      +++L   L PDH +   LL    + +   EE +    +M      KP    +
Sbjct: 650 GKQAIDLFKRMLQTGLTPDHVSFLALLY-ACSHSKLVEEGKHYLDIMVSKYRLKP----W 704

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA 626
            EH   +   L       QT+E    +K M M  KSA
Sbjct: 705 QEHYACVVDILGRSG---QTEEAYEFIKTMPMDPKSA 738


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/716 (33%), Positives = 392/716 (54%), Gaps = 47/716 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILF 65
           + +A+L +C   +SLK  ++IHGQI+  G    +   + LI+ +   G   G + S   F
Sbjct: 108 TYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDS---F 164

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++++ ++  W  ++    + D    A  LY  M   G+V PN  T   V N+       
Sbjct: 165 KRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV-PNKITLYTVFNAYGDPHYL 223

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G  I+  +    +E D+ + N+ ++ +   G + +A ++FE  + RD+V++N +I  Y
Sbjct: 224 SEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFY 283

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q +    A+ LF ++Q   I+ +  TFV M +  T L     GK  H +V K  G    
Sbjct: 284 VQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELV-KEAG-YDR 341

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++++ TA++++Y +C     A ++F  MG                               
Sbjct: 342 DVVVATALMSLYGRCEAPGQAWKIFVDMG------------------------------- 370

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             +D+++WT M   Y+Q G   +AL+LF +M+  G  P   T+VAVL  C  L AL  G+
Sbjct: 371 -SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGR 429

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H   IEN  F   + + TA+I+MY KCG +  A SVF K+ K  + + ++NS++   A
Sbjct: 430 QIHSHIIENG-FRMEMVVETALINMYGKCGKMAEARSVFEKMAK--RDILVWNSMLGAYA 486

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQM 484
           QHG  + ++ +F +M+L G K D V+FV+VL A SH G V +G Q+F +ML ++ I P  
Sbjct: 487 QHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTP 546

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           E YGC+VDLL R GR+ EA  ++  +     + ++W  LL ACR H      + A +++L
Sbjct: 547 ELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVL 606

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           + +P H   YV+LSN+ A    W+   ++RKLM   G++K PG S IE    +H FL   
Sbjct: 607 ERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGD 666

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +SHP+   I   L  +  ++++AGY+P+T  ++ DV++E KE ++ YHSE+LA+AFGL++
Sbjct: 667 RSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMS 726

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +     +R+ KNLR+C DCH A K +S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 727 TPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 163/350 (46%), Gaps = 37/350 (10%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+   F  +L  C+   +   G ++H H+   G E +  +   LI  Y+  G +  A +V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           FE    +D+ ++  +I  Y Q  +   AL +F +MQ+  + P   T+VA+ +AC      
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           + G + H  + +  G  G ++ + TA+INMY KCG +                 AW S  
Sbjct: 123 KDGMEIHGQILQQ-GFEG-DVFVGTALINMYNKCGSVR---------------GAWDS-- 163

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                          F +++ RD+VSWTAMI+   Q   F+ A  L+ +M+  G+ P+++
Sbjct: 164 ---------------FKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKI 208

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T+  V  A      L  GK ++   + + V   ++ +  + ++M+   G +  A  +F  
Sbjct: 209 TLYTVFNAYGDPHYLSEGKFIY-SLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFED 267

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +    + V  +N +I+   Q+     ++ +F  ++  G+K + +TFV +L
Sbjct: 268 MVD--RDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLML 315



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 38/317 (11%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           +PD   FVA+   C+   +   G++ H  V         N L+   +I MYA+CG +  A
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDR--GFEQNNLVCGHLIQMYAQCGSVPEA 59

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
           ++VF  +   K   AW+ MI  Y ++G  +RA  +F QM + D++               
Sbjct: 60  QQVFEILE-RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVM--------------- 103

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
                           P +VT VA+L AC    +L  G  +H Q ++    G ++F+ TA
Sbjct: 104 ----------------PTKVTYVAILNACASTESLKDGMEIHGQILQQGFEG-DVFVGTA 146

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +I+MY KCGS+  A   F ++    + V  + ++I+   QH     +  ++R M+L G+ 
Sbjct: 147 LINMYNKCGSVRGAWDSFKRLEH--RDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 204

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           P+ +T  TV  A      + EGK  +  + +  ++  +      +++    G L +A  L
Sbjct: 205 PNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRL 264

Query: 507 IQSMPYDANSVIWRALL 523
            + M  D + V W  ++
Sbjct: 265 FEDM-VDRDVVTWNIVI 280


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 397/721 (55%), Gaps = 51/721 (7%)

Query: 7   EHSSLLALLESCKSLKQA---LQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           ++ +L+ LL     L+     +QIH  ++  G  +++   + L+  +  + C   L+ + 
Sbjct: 139 DYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHC---LYLAS 195

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF  + N +   +N+LM GYS     +EA+ L+  + + GI  P++FTF  +L++   L
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGI-KPSDFTFAALLSAAVGL 254

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              K G Q+H  ++K    +++F+ NAL+ +YS    ++   K+F      D +SYN +I
Sbjct: 255 DDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVI 314

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             YA   +   +  LFRK+Q +      F F  + S  T   + R+G+Q H         
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI----T 370

Query: 243 VGSNM--LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           VG+N    ++ A+++MYAKC                                G  E A++
Sbjct: 371 VGANFESRVENALVDMYAKCN-------------------------------GDKE-AQK 398

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +FD +  +  V WTAMIS Y Q G   + + +F  M   G+  D+ T  ++LRAC  L +
Sbjct: 399 IFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLAS 458

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +  G++LH   I +  F  N++  +A++D YAKCG +  A+  F ++P+   +VS +N++
Sbjct: 459 ISLGRQLHSLLIRSG-FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPER-NSVS-WNAL 515

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           IS  AQ+G  + ++  F++M   G KPD V+F++VL ACSH G VEE    F SM   Y 
Sbjct: 516 ISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYE 575

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           + P+ EHY  MVD+L R+GR DEA  L+  MP++ + ++W ++L +CR+H+N ++ + A 
Sbjct: 576 VTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAA 635

Query: 540 QKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +L ++E     A Y+ +SN+ A   +W+   +V+K M D G++K P +S++E     H 
Sbjct: 636 DRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHV 695

Query: 599 FLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
           F A+ KSHP+ K+I   +  ++ +++  GY P+T   + DVDE  K   + YHSE+ A+A
Sbjct: 696 FSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIA 755

Query: 659 FGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           F L+N+     I + KNLR C DCH A K++S+I  REI+VRD+ RFH FK G CSC D+
Sbjct: 756 FALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDY 815

Query: 719 W 719
           W
Sbjct: 816 W 816



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 219/470 (46%), Gaps = 43/470 (9%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L ++R LF  +       W  L+ GY +S+  +EA  LY  M  +G + P+  T   +L+
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADM-RRGGIEPDYVTLVTLLS 148

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
               L +     QIH H+IK G E++L + N+L+  Y     +  A ++F+  L +D V+
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N+L+ GY+       A+ LF ++ +S I+P  FTF A+ SA   L+D + G+Q H  V 
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K      +N +    V N                            +++  Y++  +++ 
Sbjct: 269 K------TNFVWNVFVGN----------------------------ALLDYYSKHDQVDE 294

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
             +LF +M + D +S+  +I+ Y+  G F ++ +LF K++       +     +L     
Sbjct: 295 VGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATS 354

Query: 358 LGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              L  G+++H Q I     G N    +  A++DMYAKC     A  +F  I    K+  
Sbjct: 355 SLNLRMGRQIHCQAI---TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIA--CKSTV 409

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++IS   Q G  E  I VF +M   G+  D  TF ++L AC++   +  G+Q    +
Sbjct: 410 PWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLL 469

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +  G    +     ++D  A+ G + +A      MP + NSV W AL++A
Sbjct: 470 IRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALISA 518



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 193/440 (43%), Gaps = 69/440 (15%)

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV---------- 166
           NS A   S  S   I  HI+K G   +    N  ++ +   G + +AH+V          
Sbjct: 16  NSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTI 75

Query: 167 ---------------------FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
                                F+G + R  VS+  LI GY Q  +   A  L+  M+   
Sbjct: 76  SLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGG 135

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           I+PD  T V + S   EL    +  Q H  V K LG    N+++  ++++ Y K   + +
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIK-LG-YEYNLMVCNSLVDAYCKTHCLYL 193

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A ++F  M ++K T  ++S+++GY+ EG  E                             
Sbjct: 194 ASQLFKHM-LNKDTVTFNSLMTGYSNEGLNE----------------------------- 223

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +A+ELF ++ + GI P + T  A+L A VGL    FG+++H  ++    F  N+F+  
Sbjct: 224 --EAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVH-GFVLKTNFVWNVFVGN 280

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A++D Y+K   +D    +FY++P+ L  +S +N +I+  A +G  + S  +FR+++    
Sbjct: 281 ALLDYYSKHDQVDEVGKLFYEMPE-LDGIS-YNVVITSYAWNGQFKESFDLFRKLQFTRF 338

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
                 F T+L   +    +  G+Q     +  G   +      +VD+ A+     EA  
Sbjct: 339 DRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQK 398

Query: 506 LIQSMPYDANSVIWRALLAA 525
           +  ++   + +V W A+++A
Sbjct: 399 IFDNIACKS-TVPWTAMISA 417


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/663 (36%), Positives = 377/663 (56%), Gaps = 45/663 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++  P+   +NTL+  Y+R    Q A  L+  M  +  +  + FT   ++ +C    
Sbjct: 96  LFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM-REAFLDMDGFTLSGIITACGINV 154

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLI 182
                 Q+H   +  GL+  + + NALI  YS  G++  A ++F   S  RD VS+N+++
Sbjct: 155 GLIR--QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMV 212

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             Y Q +E   AL L+ +M    +  D FT  ++ +A T + D   G QFHA + K+   
Sbjct: 213 VAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKS--G 270

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              N  + + +I++Y+KCG                               G +   R++F
Sbjct: 271 YHQNSHVGSGLIDLYSKCG-------------------------------GCMLDCRKVF 299

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           D++   DLV W  MISGYS     S +ALE F +++ +G  PD+ ++V V+ AC  + + 
Sbjct: 300 DEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSP 359

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             G+++H   ++  +    I +  A+I MY+KCG++  A ++F  +P++  TVS +NS+I
Sbjct: 360 SQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEH-NTVS-YNSMI 417

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
           +G AQHG+G  S+ +F+ M  MG  P  +TF++VL AC+H G VE+GK +F  M   +GI
Sbjct: 418 AGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGI 477

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P+  H+ CM+DLL R G+L EA  LI+++P+D     W ALL ACR+H N ++   A  
Sbjct: 478 EPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAAN 537

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           +LL L+P + A YV+L+N+ ++  R ++A  VRKLM D G++K PG S+IE N  +H F+
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFV 597

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD----EEEKETVVSYHSEKLA 656
           A    HP  K+I+  L++M  K+K  GY P     +   D    + E+E  + +HSEKLA
Sbjct: 598 AEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLA 657

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           ++FGL+++R  E I + KNLRIC DCH A K +SE+ +REI VRD+ RFH FK G CSC 
Sbjct: 658 VSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCG 717

Query: 717 DFW 719
            +W
Sbjct: 718 GYW 720



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 213/464 (45%), Gaps = 47/464 (10%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS--RILFSQIDNPNIFIWNTLMRG 82
           Q+H   V +GL+ ++S  + LI+ ++    KNG  +   RI     ++ +   WN+++  
Sbjct: 159 QLHALSVVTGLDSYVSVGNALITSYS----KNGFLKEARRIFHWLSEDRDEVSWNSMVVA 214

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y +     +AL LY  M  +G++  + FT   VL +   +     G Q H  +IK G   
Sbjct: 215 YMQHREGSKALELYLEMTVRGLIV-DIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQ 273

Query: 143 DLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC-PALWLFRK 200
           +  + + LI  YS   G + +  KVF+     DLV +NT+I+GY+  ++    AL  FR+
Sbjct: 274 NSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQ 333

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           +Q    +PD  + V + SAC+ ++ P  G+Q H +  K L    + + +  A+I MY+KC
Sbjct: 334 LQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALK-LDIPSNRISVNNALIAMYSKC 392

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +  A+ +F TM    +T +++SMI+GY + G                           
Sbjct: 393 GNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGM-------------------------- 425

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
               GF Q+L LF +M  +G  P  +T ++VL AC   G ++ GK       +       
Sbjct: 426 ----GF-QSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE 480

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
               + +ID+  + G +  A  +   IP +      +++++     H  G   +A+    
Sbjct: 481 AGHFSCMIDLLGRAGKLSEAERLIETIPFD-PGFFFWSALLGACRIH--GNVELAIKAAN 537

Query: 441 ELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            L+ L P +   +V +    S  G +++     + M + G+K +
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKK 581



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 205/423 (48%), Gaps = 53/423 (12%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F  + + C RLS+ +     H H      + ++F  N LI  Y+   Y+  AH++F+   
Sbjct: 49  FLLLYSKCRRLSAARRVFD-HTH------DCNVFSFNTLISAYAKESYVEVAHQLFDEMP 101

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
             D VSYNTLI  YA+  +  PA  LF +M+++ +  D FT   + +AC  +N   I +Q
Sbjct: 102 QPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG-INVGLI-RQ 159

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT- 290
            HA+    +  + S + +  A+I  Y+K G +  A R+F  +   +   +W+SM+  Y  
Sbjct: 160 LHALSV--VTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQ 217

Query: 291 -REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            REG                                 S+ALEL+ +M   G+  D  T+ 
Sbjct: 218 HREG---------------------------------SKALELYLEMTVRGLIVDIFTLA 244

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS-IDTALSVFYKIP 408
           +VL A   +  L  G + H + I++  + +N  + + +ID+Y+KCG  +     VF +I 
Sbjct: 245 SVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS 303

Query: 409 KNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
                + L+N++ISG + +  L + ++  FR+++++G +PD  + V V+ ACS+     +
Sbjct: 304 N--PDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQ 361

Query: 468 GKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+Q     L   I   ++     ++ + ++ G L +A  L  +MP + N+V + +++A  
Sbjct: 362 GRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGY 420

Query: 527 RLH 529
             H
Sbjct: 421 AQH 423



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 163/340 (47%), Gaps = 12/340 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L    + + L   LQ H +++ SG   N H+ S  LI  +  S C   +   R +F 
Sbjct: 244 ASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSG-LIDLY--SKCGGCMLDCRKVFD 300

Query: 67  QIDNPNIFIWNTLMRGYS-RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +I NP++ +WNT++ GYS   D   EAL  +  +   G   P++ +   V+++C+ +SS 
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVG-HRPDDCSLVCVISACSNMSSP 359

Query: 126 KSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G Q+H   +K  +  + + + NALI  YS  G + +A  +F+     + VSYN++I G
Sbjct: 360 SQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAG 419

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ      +L LF++M +    P   TF+++ +AC        GK +  ++ +  G + 
Sbjct: 420 YAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFG-IE 478

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQL 301
                 + +I++  + G ++ AER+  T+        WS+++      G +E   +A   
Sbjct: 479 PEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANR 538

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             Q+D  +   +  + + YS  G    A  +   M   G+
Sbjct: 539 LLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGV 578



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 19/293 (6%)

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
            F      C    D R GK  HA+  K+   V ++  L    + +Y+KC  ++ A RVF 
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSF--VPTSTYLSNHFLLLYSKCRRLSAARRVFD 67

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                 +  +++++IS Y +E  +E A QLFD+M Q D VS+  +I+ Y++ G    A +
Sbjct: 68  HT-HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQ 126

Query: 332 LFGKMESLGIHPDEVTMVAVLRAC---VGLGALDFGKRLHQQYIENVVFGRNIFLT--TA 386
           LF +M    +  D  T+  ++ AC   VGL        + Q +  +VV G + +++   A
Sbjct: 127 LFLEMREAFLDMDGFTLSGIITACGINVGL--------IRQLHALSVVTGLDSYVSVGNA 178

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +I  Y+K G +  A  +F+ + ++   VS +NS++    QH  G  ++ ++ EM + GL 
Sbjct: 179 LITSYSKNGFLKEARRIFHWLSEDRDEVS-WNSMVVAYMQHREGSKALELYLEMTVRGLI 237

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLARDG 498
            D  T  +VL A ++   +  G QF   ++  G   Q  H G  ++DL ++ G
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYH-QNSHVGSGLIDLYSKCG 289


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/706 (34%), Positives = 381/706 (53%), Gaps = 45/706 (6%)

Query: 21  LKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCK-NGLFRSRILFSQIDNPNIFIWN 77
            K  L + G ++ +G   +H     +LI  F + GC    L  +R +F ++   N+  W 
Sbjct: 172 FKTGLCLFGFVLKTGYFDSHVCVGCELIDMF-VKGCSLADLESARKVFDKMREKNVVTWT 230

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            ++   ++     EA+ L+  ML      P+ FT   +++ CA +     G ++H  +I+
Sbjct: 231 LMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIR 290

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE--PCPAL 195
            GL  DL +  +L+  Y+  G +  A KVF+G    +++S+  L+NGY +        A+
Sbjct: 291 SGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAM 350

Query: 196 WLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
            +F  M     + P+ FTF  +  AC  L D   G+Q H    K                
Sbjct: 351 RMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIK---------------- 394

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
                             +G+S      + ++S Y + G++E AR+ FD + +++LVS T
Sbjct: 395 ------------------LGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSET 436

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
            +     +    +   +L  ++E +G      T  ++L     +G +  G+++H   ++ 
Sbjct: 437 VVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVK- 495

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
           + F  ++ +  A+I MY+KCG+ + AL VF  +      V  + SII+G A+HG    ++
Sbjct: 496 IGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDC--NVITWTSIINGFAKHGFASKAL 553

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDL 493
            +F  M   G+KP+ VT++ VL ACSH GL++E  + F SM  N+GI P+MEHY CMVDL
Sbjct: 554 ELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDL 613

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
           L R G L EA   I SMP+DA++++WR  L +CR+HRN K+GE A + +L+ EP   A Y
Sbjct: 614 LGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATY 673

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           +LLSN+ A   RWE+   +RK M    I K  G S+IE    +H+F      HP+ ++I 
Sbjct: 674 ILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIY 733

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
             L ++ +K+K+ GYVPNT  V+ DV++E+KE  +  HSEKLA+AF LI++ + + IR+ 
Sbjct: 734 EKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVF 793

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR+CGDCH A K +S +  REI+VRDA RFH  K G CSC D+W
Sbjct: 794 KNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 204/435 (46%), Gaps = 47/435 (10%)

Query: 81  RGYSRSDSPQEALVLYTSM-LSKGIVSPNN--FTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           + ++  ++PQ+     T++ L+    + NN   T   +L  C R  +   G  +H  +  
Sbjct: 21  QNFNHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTT 80

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEG--SLARDLVSYNTLINGYAQVKEPCPAL 195
             L  D  + N+LI  YS       A  +F+   +  RD+VSY+++I+ +A  +    A+
Sbjct: 81  SNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAV 140

Query: 196 WLFRK--MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
            +F +  +QD  + P+ + F A+  AC +    + G      V K  G   S++ +   +
Sbjct: 141 EMFDQLLLQDG-VYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKT-GYFDSHVCVGCEL 198

Query: 254 INMYAK-CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           I+M+ K C L ++                              E AR++FD+M ++++V+
Sbjct: 199 IDMFVKGCSLADL------------------------------ESARKVFDKMREKNVVT 228

Query: 313 WTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           WT MI+  +Q G   +A++LF +M  S G  PD  T+  ++  C  +  L  GK LH   
Sbjct: 229 WTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWV 288

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG- 430
           I + +   ++ +  +++DMYAKCG +  A  VF  + ++   V  + ++++G  + G G 
Sbjct: 289 IRSGLV-LDLCVGCSLVDMYAKCGLVQEARKVFDGMREH--NVMSWTALVNGYVRGGGGY 345

Query: 431 -ETSIAVFREMELM-GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
              ++ +F  M L  G+ P+  TF  VL AC+     + G+Q     +  G+        
Sbjct: 346 EREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGN 405

Query: 489 CMVDLLARDGRLDEA 503
            +V + A+ GR++ A
Sbjct: 406 GLVSVYAKSGRMESA 420


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/559 (39%), Positives = 341/559 (61%), Gaps = 23/559 (4%)

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF-------------SACT 221
           L+++N L+   A  + PCP L  F   ++  + PD ++F  +                 T
Sbjct: 79  LLAHNGLLRALA--RGPCPGL-AFAAFRELPLAPDHYSFTFLVRAATSLAAAASATPVPT 135

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           ++    +    HA  +++      +  +++  ++MYA  G +      F+ + +S     
Sbjct: 136 DVAVNLLAGSVHAAAFQHGHATDPH--VQSGAVSMYAAVGDVGAVRAAFAEI-VSPDVVC 192

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            ++M+   +  G ++ AR+LFD M QRD V+W AM++GY +VG   +AL LF +M+  G+
Sbjct: 193 VTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGV 252

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
              EVT+V+VL AC  +GAL+ G  +H  Y+ +     ++ L TA++DMY+KCG +  ++
Sbjct: 253 AVSEVTLVSVLTACAQMGALERGMWVHS-YVCSRGMRVSVTLGTALVDMYSKCGVVTMSM 311

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF  + +  + +  + S +SGLA +G+GE  + +F+ ME  G++P+GVTFV VL  CS 
Sbjct: 312 EVFETMRE--RNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSV 369

Query: 462 GGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
            GLVEEG+  F+SM + + ++P +EHYGCMVDL  R GRLD+A   I SMP + +  +W 
Sbjct: 370 AGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWG 429

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
           ALL A R+H N  +G+ A  KL ++E  + A +VLLSN+ AE++ W+   +VR +M   G
Sbjct: 430 ALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKG 489

Query: 581 IQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           ++K PG S IE +G +H F    KSHP+ K+I+ ML +M+ +L+  GY  NT +V+FD++
Sbjct: 490 VKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIE 549

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           EEEKE  +S HSEKLALAFGLI       IRI KNLR+C DCH   KL+S+++ REI++R
Sbjct: 550 EEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMR 609

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH FK G CSC D+W
Sbjct: 610 DRNRFHHFKHGACSCRDYW 628



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 34/266 (12%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+    A++   S  G ++ A ++F+G   RD V++N ++ GY +V     AL LF +MQ
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQ 248

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
            + +     T V++ +AC ++     G   H+ V      V  ++ L TA+++MY+KCG+
Sbjct: 249 KAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRV--SVTLGTALVDMYSKCGV 306

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           + M+  VF TM   ++   W+S +SG    G  E   +LF                    
Sbjct: 307 VTMSMEVFETM-RERNIYTWTSALSGLAMNGMGEECLELFK------------------- 346

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                       +MES G+ P+ VT VAVLR C   G ++ G+       +       + 
Sbjct: 347 ------------RMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLE 394

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIP 408
               ++D+Y + G +D A+     +P
Sbjct: 395 HYGCMVDLYGRAGRLDDAVDFINSMP 420



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 120/258 (46%), Gaps = 24/258 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   +   WN ++ GY R    +EAL L+  M   G V+ +  T   VL +CA
Sbjct: 209 ARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAG-VAVSEVTLVSVLTACA 267

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++ + + G  +H ++   G+   + +  AL+  YS  G +  + +VFE    R++ ++ +
Sbjct: 268 QMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTS 327

Query: 181 LINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG-------KQ 231
            ++G A   + E C  L LF++M+ + ++P+  TFVA+   C+       G       K 
Sbjct: 328 ALSGLAMNGMGEEC--LELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKD 385

Query: 232 FHAVV--YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
            H V    ++ GC          ++++Y + G ++ A    ++M +      W ++++  
Sbjct: 386 KHKVEPWLEHYGC----------MVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNAS 435

Query: 290 TREGKIERARQLFDQMDQ 307
                ++  +    ++ +
Sbjct: 436 RIHNNVDLGKHAMHKLTE 453


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 365/594 (61%), Gaps = 11/594 (1%)

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYNT 180
           ++FK   QIH  +   G   D  +    +   ++    Y++ A+++ + S    L + N+
Sbjct: 25  TTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNS 84

Query: 181 LINGYAQVKEPCPALWLFRKMQDSC--IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           +I  + +   P  +   + ++  S   ++PD +T   +  ACT L     G Q H +  +
Sbjct: 85  MIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIR 144

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                 ++  ++T +I++YA+ G ++   +VF+++         ++M++   R G +  A
Sbjct: 145 R--GFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCR-TAMVTACARCGDVAFA 201

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R+LF+ M ++D ++W AMISGY+QVG   +AL LF  M+  G+  + V+M++VL AC  L
Sbjct: 202 RKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQL 261

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GALD G+  H  YIE       + L T ++D+YAKCG +D A+ VF+ + +  K V  ++
Sbjct: 262 GALDQGRWAHS-YIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEE--KNVYTWS 318

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
           S ++GLA +G GE  + +F  M+  G+ P+ VTFV+VL  CS  G V+EG++ F+SM N 
Sbjct: 319 SALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNE 378

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI+PQ++HYGC+VDL AR GRL++A  +IQ MP  A++ +W +LL A R+++N ++G +
Sbjct: 379 FGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVL 438

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A +K+L+LE  +   YVLLSN+ A++  W+    VR+ M   G++K PG S +E NG +H
Sbjct: 439 ASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 498

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F    KSHP+  EI+ + KD++ +L+ AGY  +T  V+FD+DEEEKE  +  HSEK A+
Sbjct: 499 EFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAI 558

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           AFG+++ ++   IRI KNLR+CGDCH    ++S+I+ REI+VRD  RFH FK G
Sbjct: 559 AFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 305/517 (58%), Gaps = 43/517 (8%)

Query: 207  QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
            +P+  TF++M SAC    +   G   H +V K      S +L +  V+N      LMN+ 
Sbjct: 634  RPNEVTFLSMISACVHGGNKEEGVCIHGLVMK------SGVLEEVKVVN-----ALMNL- 681

Query: 267  ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                                  Y + G +  + +LF+ +  ++LVSW  MI  + Q G  
Sbjct: 682  ----------------------YGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLA 719

Query: 327  SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
             + L  F     +G+ PD+ T +AVLR C  +G +   + +H   I    F  N  +TTA
Sbjct: 720  EEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHG-LIMFCGFNANTCITTA 778

Query: 387  VIDMYAKCGSIDTALSVFYKI--PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            ++D+YAK G ++ + +VF +I  P ++     + ++++  A HG G  +I  F  M   G
Sbjct: 779  LLDLYAKLGRLEDSSTVFLEITSPDSMA----WTAMLAAYATHGYGRDAIKHFELMVHYG 834

Query: 445  LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            L PD VTF  +L ACSH GLVEEG+ +FE+M   Y I+P+++HY CMVDL+ R G L +A
Sbjct: 835  LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDA 894

Query: 504  YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
            YGLI+ MP + +S +W ALL ACR++++ ++G  A ++L +LEP  G +Y++LSN+ + +
Sbjct: 895  YGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSAS 954

Query: 564  YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
              W++A ++R LM   G+ +  G+SYIEH   +H+F+    SHP++++I+  LK++  K+
Sbjct: 955  GLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKM 1014

Query: 624  KSA-GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
            KS  G+   T  V+ DVDE+ KE +++ HSEK+A+AFGL+     E I I KNLRICGDC
Sbjct: 1015 KSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDC 1074

Query: 683  HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            H   K +S I +R I++RD+ RFH F +G+CSC D+W
Sbjct: 1075 HETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 215/444 (48%), Gaps = 76/444 (17%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGL 58
           M R+V +H ++ +LL+S  + K+  QIH ++   G   + H+   Q +   ALS      
Sbjct: 9   MSRIV-KHPAI-SLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVG-QFVKAVALSDHTYLD 65

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLN 117
           + ++IL  + D P +F  N+++R + +S  P+++   Y+ +LS G  + P+N+T  F++ 
Sbjct: 66  YANQIL-DRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQ 124

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV----------- 166
           +C  L   ++G Q+H   I+ G + D  ++  LI  Y+  G +++ HKV           
Sbjct: 125 ACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVC 184

Query: 167 --------------------FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
                               FEG   +D +++N +I+GYAQV E   AL LF  MQ   +
Sbjct: 185 RTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGV 244

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           + +  + +++ SACT+L     G+  H+ + +N   +   + L T ++++YAKCG M+ A
Sbjct: 245 KVNGVSMISVLSACTQLGALDQGRWAHSYIERNK--IKITVRLGTTLVDLYAKCGDMDKA 302

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
             VF  M   K+   WSS ++G    G  E+  +LF  M Q                   
Sbjct: 303 MEVFWGM-EEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQD------------------ 343

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT-- 384
                        G+ P+ VT V+VLR C  +G +D G++ H   + N  FG    L   
Sbjct: 344 -------------GVTPNAVTFVSVLRGCSVVGFVDEGQK-HFDSMRN-EFGIEPQLDHY 388

Query: 385 TAVIDMYAKCGSIDTALSVFYKIP 408
             ++D+YA+ G ++ A+S+  ++P
Sbjct: 389 GCLVDLYARAGRLEDAVSIIQQMP 412



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 143/316 (45%), Gaps = 36/316 (11%)

Query: 94  VLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153
           VL   M S+    PN  TF  ++++C    + + G  IH  ++K G+  ++ + NAL++ 
Sbjct: 622 VLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNL 681

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           Y   G + ++ K+FE    ++LVS+NT+I  + Q       L  F   +   ++PD  TF
Sbjct: 682 YGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATF 741

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           +A+   C ++   R+ +  H ++   + C   +N  + TA++++YAK G +  +  VF  
Sbjct: 742 LAVLRVCEDIGVVRLSQGIHGLI---MFCGFNANTCITTALLDLYAKLGRLEDSSTVFLE 798

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +  S  + AW++M++ Y   G              RD                   A++ 
Sbjct: 799 I-TSPDSMAWTAMLAAYATHGY------------GRD-------------------AIKH 826

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F  M   G+ PD VT   +L AC   G ++ G+   +   +       +   + ++D+  
Sbjct: 827 FELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMG 886

Query: 393 KCGSIDTALSVFYKIP 408
           + G +  A  +  ++P
Sbjct: 887 RSGLLQDAYGLIKEMP 902



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 324 GGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           G   +  E+  +M    +G  P+EVT ++++ ACV  G  + G  +H   +++ V    +
Sbjct: 614 GYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVL-EEV 672

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            +  A++++Y K G + ++  +F  +  ++K +  +N++I    Q+GL E  +A F    
Sbjct: 673 KVVNALMNLYGKTGDLISSCKLFEDL--SVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSR 730

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
            +GLKPD  TF+ VL  C   G+V   +     ++  G          ++DL A+ GRL+
Sbjct: 731 WVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLE 790

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLH---RNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           ++  +   +    +S+ W A+LAA   H   R+A I          L PDH   +  L N
Sbjct: 791 DSSTVFLEIT-SPDSMAWTAMLAAYATHGYGRDA-IKHFELMVHYGLSPDH-VTFTHLLN 847

Query: 559 MLAETYRWEEAR 570
             + +   EE R
Sbjct: 848 ACSHSGLVEEGR 859



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 159/368 (43%), Gaps = 25/368 (6%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           + L+++ +C    + ++ + IHG ++ SG+   +      +   L G    L  S  LF 
Sbjct: 639 TFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVN--ALMNLYGKTGDLISSCKLFE 696

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   N+  WNT++  + ++   +E L  +      G+  P+  TF  VL  C  +   +
Sbjct: 697 DLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGL-KPDQATFLAVLRVCEDIGVVR 755

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
               IH  I+  G   +  I  AL+  Y+  G + ++  VF    + D +++  ++  YA
Sbjct: 756 LSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYA 815

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  A+  F  M    + PD  TF  + +AC+       G+ +   + K    +   
Sbjct: 816 THGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYR-IEPR 874

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK-----IERARQL 301
           +   + ++++  + GL+  A  +   M M  S+  W +++ G  R  K      + A++L
Sbjct: 875 LDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALL-GACRVYKDTQLGTKAAKRL 933

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F +++ RD  ++  + + YS  G +  A  +   M+  G+          +RA  G   +
Sbjct: 934 F-ELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGL----------VRAS-GYSYI 981

Query: 362 DFGKRLHQ 369
           + G ++H+
Sbjct: 982 EHGNKIHK 989


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/687 (35%), Positives = 387/687 (56%), Gaps = 64/687 (9%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV-- 115
           L ++R++F +I +PN+ ++  ++ GY+R+D   +AL L+  M  + +VS N+     +  
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC 87

Query: 116 --LNSCARL------SSFKSGCQIHCHIIKFG-------LEFDLFIR-----NALIHFYS 155
             L    RL       +  S   +    +KFG       L  D+ ++     NA++H Y 
Sbjct: 88  GNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYF 147

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G +    ++FE    RD++S+ ++I G     +   AL++F+KM  S ++P   TF  
Sbjct: 148 ENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFAC 207

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + SAC    +  +G Q H  V K LGC   +  +  ++I  YA C               
Sbjct: 208 VLSACANAVEFNLGVQVHGHVVK-LGCF-FHEFISVSLITFYANCM-------------- 251

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
                             KIE A ++F++   +++V WTA+++ Y        AL +FG 
Sbjct: 252 ------------------KIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGD 293

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M  +G  P++ T    L+AC GL ALD GK +H   I+ +    ++F+  +++ MY +CG
Sbjct: 294 MTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIK-LGLETDVFVGNSLVVMYTECG 352

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
           ++++A++VF  I  N K +  +NSII G AQHG G  ++  F +M   G+ P+ +TF  +
Sbjct: 353 NVNSAVAVFRNI--NEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGL 410

Query: 456 LCACSHGGLVEEGKQFFESMLNYG---IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           L ACS  G++ +G+ FFE +  Y    ++PQ  HY CMVD+L R G+LDEA  L++ MP 
Sbjct: 411 LSACSRSGMLLKGRCFFEYISRYKSNVLRPQ--HYACMVDILGRCGKLDEAEELVRYMPV 468

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
            ANS+IW ALL+ACR+H N ++ E A + +LDLEP+  + YVLLSN+ A   RW +  ++
Sbjct: 469 KANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRM 528

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           R  M   G+ K PG S++   G  H FL++ +SHP ++ I   L  +  KLK  GYVP+ 
Sbjct: 529 RVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQ 588

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
              + DV++E+KE ++S+HSE+LA+AFGL+++    TI + KNLR+CGDCH   KL+S+I
Sbjct: 589 KFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKI 648

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
             R+I+VRD+ RFH FK G CSC D+W
Sbjct: 649 VGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 113/217 (52%), Gaps = 15/217 (6%)

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
           T ++++ ++ + +  ++++AR +FD++   +L  +T MI+GY++      AL+LF +M  
Sbjct: 12  TLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSV 71

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
                D V+  ++++ C+  G L    RL  +  E     +N+   T +++ Y K G ++
Sbjct: 72  ----RDVVSWNSMIKGCLDCGNLGMATRLFDEMPE-----KNVISWTTMVNGYLKFGRVE 122

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  +F  +  ++K V+ +N+++ G  ++G  E  + +F EM +     D +++ +++  
Sbjct: 123 LAQRLFLDM--HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPV----RDVISWTSMIGG 176

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
               G  EE    F+ ML  G++P    + C++   A
Sbjct: 177 LDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACA 213


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/729 (33%), Positives = 400/729 (54%), Gaps = 66/729 (9%)

Query: 27   IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
            +H +++ +G    I  + L++ +A S     L ++  +F +I   ++F W  L+ G++R 
Sbjct: 310  LHAKLIKNGCVG-IRGNHLLNLYAKS---QNLEQAHKMFEEIPQTDVFSWTVLISGFARI 365

Query: 87   DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-RLSSFKSGCQIHCHIIKFGLEFDLF 145
                + L L+T M  +G V PN FT   VL SC+  ++  + G  IH  I++ GL+ D  
Sbjct: 366  GLSADVLGLFTKMQDQG-VCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAV 424

Query: 146  IRNALIHFY---SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK-- 200
            + N+++ +Y     FGY   A K+F     +D VS+N +++ Y Q+ +   ++ LFR+  
Sbjct: 425  LNNSILDYYVKCRCFGY---AEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLP 481

Query: 201  --------------MQDSCIQP---------------DAFTFVAMFSACTELNDPRIGKQ 231
                          M++ C +                +  TF       + L+   +GKQ
Sbjct: 482  GKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQ 541

Query: 232  FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
             H  V K +G +  +  ++ ++I+MY KCG M  A  +F  +                 +
Sbjct: 542  IHTQVLK-VGVL-DDGFVRNSLIDMYCKCGEMEKASVIFKHL----------------PQ 583

Query: 292  EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            E  +  + +  D       VSW++M+SGY Q G F  AL+ F  M    +  D+ T+ +V
Sbjct: 584  ESSMMNSEESCDDAVVES-VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSV 642

Query: 352  LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
            + AC   G L+ G+++H  YI+ +  G ++FL +++IDMY KCGS++ A  +F +     
Sbjct: 643  VSACASAGVLELGRQVHG-YIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKD-- 699

Query: 412  KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            + V L+ S+ISG A HG G  ++ +F  M   G+ P+ V+FV VL ACSH GL+EEG ++
Sbjct: 700  RNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKY 759

Query: 472  FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
            F  M   YGI+P  EH+ CMVDL  R GRL+E    I +      S +WR+ L++CR+H+
Sbjct: 760  FRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHK 819

Query: 531  NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
            N ++G    +KLL+LEP     Y+L S++ A  +RWEEA ++R LM   G++K P  S+I
Sbjct: 820  NIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWI 879

Query: 591  EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
            +    +H F+   +SHPQ  +I   L ++  +LK  GY  +   V+ DV++E+++ ++ Y
Sbjct: 880  QLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGY 939

Query: 651  HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
            HSEKLA+A+G+I++     IR+ KNLR+C DCH   K  SE+  REI++RD  RFH FK 
Sbjct: 940  HSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKH 999

Query: 711  GNCSCMDFW 719
            G+CSC D+W
Sbjct: 1000 GHCSCADYW 1008


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/622 (37%), Positives = 357/622 (57%), Gaps = 39/622 (6%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           +++ G + P    +  +LN C  L   K G  IH HI     E DL + N +++ Y+  G
Sbjct: 95  LINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG 154

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            +  A  +F+    +D+VS+  LI+GY+Q  +   AL LF KM     QP+ FT  ++  
Sbjct: 155 SLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLK 214

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           A         G+Q HA   K     G +M       N++    L++M  R          
Sbjct: 215 ASGTGPSDHHGRQLHAFSLK----YGYDM-------NVHVGSSLLDMYAR---------- 253

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
              W+ M     RE K+     +F+ +  +++VSW A+I+G+++ G     + LF +M  
Sbjct: 254 ---WAHM-----REAKV-----IFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR 300

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI-FLTTAVIDMYAKCGSI 397
            G  P   T  +V  AC   G+L+ GK +H   I++   G+ I ++   +IDMYAK GSI
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSG--GQPIAYIGNTLIDMYAKSGSI 358

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A  VF ++ K  + +  +NSIISG AQHGLG  ++ +F +M    ++P+ +TF++VL 
Sbjct: 359 KDAKKVFRRLVK--QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLT 416

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           ACSH GL++EG+ +FE M  + I+ Q+ H+  +VDLL R GRL+EA   I+ MP    + 
Sbjct: 417 ACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAA 476

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL +CR+H+N  +G  A +++ +L+P     +VLLSN+ A   R  +A +VRK+M 
Sbjct: 477 VWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMK 536

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           +SG++K P  S++E    +H F+A+  SHP  +EI+ M + ++ K+K  GYVP+T  V+F
Sbjct: 537 ESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLF 596

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
            ++++++E  + YHSEKLALAF ++ +    TIRI KN+RICGDCH AFK  S +  REI
Sbjct: 597 FMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREI 656

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD  RFH F  G CSC D+W
Sbjct: 657 IVRDTNRFHHFLHGMCSCRDYW 678



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 216/478 (45%), Gaps = 44/478 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFS 66
           +S +L      + LKQ   IH  I  S     +    L++F      K G L  ++ LF 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLV---LLNFILNMYAKCGSLEEAQDLFD 164

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   ++  W  L+ GYS+S    EAL L+  ML  G   PN FT   +L +     S  
Sbjct: 165 KMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF-QPNEFTLSSLLKASGTGPSDH 223

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H   +K+G + ++ + ++L+  Y+ + ++  A  +F    A+++VS+N LI G+A
Sbjct: 224 HGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  E    + LF +M     +P  FT+ ++F+AC        GK  HA V K+ G     
Sbjct: 284 RKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG--QPI 341

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +   +I+MYAK G +  A++VF  + + +   +W+S+ISGY + G    A QLF+QM 
Sbjct: 342 AYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLFEQML 400

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +                                 + P+E+T ++VL AC   G LD G+ 
Sbjct: 401 KAK-------------------------------VQPNEITFLSVLTACSHSGLLDEGQY 429

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             +   ++ +  +     T V+D+  + G ++ A     ++P    T +++ +++     
Sbjct: 430 YFELMKKHKIEAQVAHHVT-VVDLLGRAGRLNEANKFIEEMPIK-PTAAVWGALLGSCRM 487

Query: 427 HGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           H      + V+   ++  L P D    V +    +  G + +  +  + M   G+K +
Sbjct: 488 H--KNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKE 543


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/598 (38%), Positives = 355/598 (59%), Gaps = 18/598 (3%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH  +++ GL     +   L   Y+  G+++++  +F  +   ++  +  +IN +A   
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL  + +M    IQP+AFT  ++  ACT    P      HA+ +     + S++ +
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACTL--HPARAVHSHAIKFG----LSSHLYV 154

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            T +++ YA+ G +  A+++F  M   +S  ++++M++ Y + G +  AR LF+ M  +D
Sbjct: 155 STGLVDAYARGGDVASAQKLFDAMP-ERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKD 213

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLG-------IHPDEVTMVAVLRACVGLGALD 362
           +V W  MI GY+Q G  ++AL  F KM  +        + P+E+T+VAVL +C  +GAL+
Sbjct: 214 VVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALE 273

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK +H  Y+EN     N+ + TA++DMY KCGS++ A  VF  +    K V  +NS+I 
Sbjct: 274 CGKWVHS-YVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEG--KDVVAWNSMIM 330

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           G   HG  + ++ +F EM  +G+KP  +TFV VL AC+H GLV +G + F+SM + YG++
Sbjct: 331 GYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGME 390

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P++EHYGCMV+LL R GR+ EAY L++SM  + + V+W  LL ACR+H N  +GE   + 
Sbjct: 391 PKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEI 450

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L+         YVLLSNM A    W    +VR +M  SG++K PG S IE    +H F+A
Sbjct: 451 LVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVA 510

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             + HP++K+I  ML+ M   LK   Y P T  V+ D+ E+EKE  +  HSEKLALAFGL
Sbjct: 511 GDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGL 570

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I++     I+I KNLR+C DCH   K++S+I  R+I++RD  RFH F+ G+CSC D+W
Sbjct: 571 ISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 78/348 (22%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH----------------ISSSQ--------- 44
           +L +LL++C +L  A  +H   +  GL+ H                ++S+Q         
Sbjct: 123 TLSSLLKAC-TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPER 181

Query: 45  -LISFFALSGC--KNGLF-RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
            L+S+ A+  C  K+G+   +R+LF  +   ++  WN ++ GY++   P EALV +  M+
Sbjct: 182 SLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMM 241

Query: 101 SKGI------VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
                     V PN  T   VL+SC ++ + + G  +H ++   G++ ++ +  AL+  Y
Sbjct: 242 MMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMY 301

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
              G + +A KVF+    +D+V++N++I GY        AL LF +M    ++P   TFV
Sbjct: 302 CKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFV 361

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM- 273
           A+ +AC                                     A  GL++    VF +M 
Sbjct: 362 AVLTAC-------------------------------------AHAGLVSKGWEVFDSMK 384

Query: 274 ---GMSKSTAAWSSMISGYTREGKIERARQLFDQMD-QRDLVSWTAMI 317
              GM      +  M++   R G+++ A  L   M+ + D V W  ++
Sbjct: 385 DGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLL 432


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/722 (33%), Positives = 380/722 (52%), Gaps = 54/722 (7%)

Query: 7    EHSSLLALLESCKS---LKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRS 61
            + ++L +L+ +C S   L    Q+H      G   N  I  + L  +   S  +  L   
Sbjct: 371  DSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALN-- 428

Query: 62   RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
               F + +  N+ +WN ++  Y   D  + +  ++  M  + IV PN +T+P +L +C R
Sbjct: 429  --YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIR 485

Query: 122  LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            L   + G QIH  IIK   + + ++ + LI  Y+  G ++ A  +      +D+VS+ T+
Sbjct: 486  LGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 545

Query: 182  INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            I GY Q      AL  FR+M D  I+ D        SAC  L   + G+Q HA       
Sbjct: 546  IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA-----QA 600

Query: 242  CVG---SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
            CV    S++  + A++ +Y+KCG                                 IE A
Sbjct: 601  CVSGFSSDLPFQNALVTLYSKCG--------------------------------NIEEA 628

Query: 299  RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
               F+Q +  D ++W A++SG+ Q G   +AL +F +M   GI  +  T  + ++A    
Sbjct: 629  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASET 688

Query: 359  GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
              +  GK++H   I    +     +  A+I MYAKCGSI  A   F ++  ++K    +N
Sbjct: 689  ANMKQGKQVHA-VITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLEL--SMKNEVSWN 745

Query: 419  SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
            ++I+  ++HG G  ++  F +M    ++P+ VT V VL ACSH GLV++G ++FESM   
Sbjct: 746  AMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTE 805

Query: 478  YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
            YG+ P+ EHY C+VD+L R G L  A   I  MP + ++++WR LL+AC +H+N +IGE 
Sbjct: 806  YGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEF 865

Query: 538  AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
            A   LL+LEP+  A YVLLSN+ A   +W+     R+ M + G++K PG S+IE   ++H
Sbjct: 866  AAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 925

Query: 598  RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
             F    ++HP   EI    KD+T +    GYV +   ++ ++ +E+K+  +  HSEKLA+
Sbjct: 926  SFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAI 985

Query: 658  AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
            +FGL++  +   I + KNLR+C DCH   K +S++  REI+VRDA RFH F+ G CSC D
Sbjct: 986  SFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKD 1045

Query: 718  FW 719
            +W
Sbjct: 1046 YW 1047



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 252/519 (48%), Gaps = 49/519 (9%)

Query: 13  ALLESCKSLKQAL----QIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLF-RSRILFS 66
            +LE+C+    A     QIH +I++ GL    I  + LI  ++    +NG   R+R +F 
Sbjct: 174 GVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYS----RNGFVDRARRVFD 229

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +   W  ++ G S+++   EA+ L+  M   GI+ P  + F  VL++C ++ S +
Sbjct: 230 GLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLE 288

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H  ++K G   D ++ NAL+  Y   G + +A  +F     RD V+YNTLING +
Sbjct: 289 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLS 348

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+ LF++MQ   ++PD+ T  ++  AC+       G+Q HA   K LG   SN
Sbjct: 349 QCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTK-LG-FASN 406

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             ++ A++N+YAKC                                  IE A   F + +
Sbjct: 407 DKIEGALLNLYAKC--------------------------------SDIETALNYFLETE 434

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             ++V W  M+  Y  +     +  +F +M+   I P++ T  ++L+ C+ LG L+ G++
Sbjct: 435 VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 494

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H Q I+   F  N ++ + +IDMYAK G +DTA  +  +     K V  + ++I+G  Q
Sbjct: 495 IHSQIIK-TSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--KDVVSWTTMIAGYTQ 551

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +   + ++  FR+M   G++ D V     + AC+    ++EG+Q        G    +  
Sbjct: 552 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 611

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +V L ++ G ++EAY L        +++ W AL++ 
Sbjct: 612 QNALVTLYSKCGNIEEAY-LAFEQTEAGDNIAWNALVSG 649



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 212/447 (47%), Gaps = 54/447 (12%)

Query: 105 VSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           + PN+ T  ++L  C + + S   G ++H  I+K G + +  +   L+ FY   G ++ A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            KVF+    R + ++N +I   A          LF +M +  + P+  TF  +  AC   
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 224 NDP-RIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           +    + +Q HA ++Y+ L   G + ++   +I++Y++ G ++ A RVF  + + K  ++
Sbjct: 183 SVAFDVVEQIHARIIYQGL---GKSTIVCNPLIDLYSRNGFVDRARRVFDGLYL-KDHSS 238

Query: 282 WSSMISGYTR-EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           W +MISG ++ E ++E                                A+ LF  M  LG
Sbjct: 239 WVAMISGLSKNECEVE--------------------------------AIRLFCDMYVLG 266

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I P      +VL AC  + +L+ G++LH   ++ + F  + ++  A++ +Y   GS+ +A
Sbjct: 267 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK-LGFSSDTYVCNALVSLYFHLGSLISA 325

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             +F  + +  +    +N++I+GL+Q G GE ++ +F+ M+L GL+PD  T  +++ ACS
Sbjct: 326 EHIFSNMSQ--RDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             G +  G+Q        G     +  G +++L A+   ++ A         + N V+W 
Sbjct: 384 SDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVE-NVVLWN 442

Query: 521 ALLAAC----------RLHRNAKIGEI 537
            +L A           R+ R  +I EI
Sbjct: 443 VMLVAYGLLDDLRNSFRIFRQMQIEEI 469



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +G   +      ++  Y  +G ++ A ++FD+M +R + +W  MI   +      +   L
Sbjct: 97  LGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCL 156

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           FG+M +  + P+E T   VL AC G   A D  +++H + I   + G++  +   +ID+Y
Sbjct: 157 FGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGL-GKSTIVCNPLIDLY 215

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           ++ G +D A  VF  +   LK  S + ++ISGL+++     +I +F +M ++G+ P    
Sbjct: 216 SRNGFVDRARRVFDGL--YLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYA 273

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F +VL AC     +E G+Q    +L  G          +V L    G L  A  +  +M 
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS 333

Query: 512 YDANSVIWRAL---LAACRLHRNAKIGEIAGQKLLD-LEPD 548
              ++V +  L   L+ C     A   E+  +  LD LEPD
Sbjct: 334 -QRDAVTYNTLINGLSQCGYGEKAM--ELFKRMQLDGLEPD 371


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/698 (34%), Positives = 382/698 (54%), Gaps = 41/698 (5%)

Query: 46  ISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
           IS+FA  G    + R+R +F  + +  +  WN ++ GY  +  P EA  L+  M  +  +
Sbjct: 23  ISYFARLG---QIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTI 79

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF-------- 157
           S N     +V N     +          +++ +      +++  LI    +         
Sbjct: 80  SWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKN 139

Query: 158 --------------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
                         G ++ A ++F+    +D+V+   +I G         A    R++ D
Sbjct: 140 VVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEA----REIFD 195

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
              Q +   + +M S     N   + ++   V+         N +  TA++  Y + G +
Sbjct: 196 EMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK------NEVTWTAMLKGYTRSGRI 249

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
           N A  +F  M + K  AA + MI G+   G++ +AR +FDQM ++D  +W+A+I  Y + 
Sbjct: 250 NEAAELFKAMPV-KPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERK 308

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +AL LF  M+  G+ P+  +++++L  C  L +LD G+++H Q + +  F  +I++
Sbjct: 309 GFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH-FDLDIYV 367

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
           ++ +I MY KCG + T   VF +     K + ++NSII+G AQHG GE ++ VF EM   
Sbjct: 368 SSVLITMYIKCGDLVTGKRVFDRFSS--KDIVMWNSIIAGYAQHGFGEKALEVFHEMFSS 425

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDE 502
           G  PD +TF+ VL AC + G V+EG + FESM + Y +  + EHY CMVDLL R G+L+E
Sbjct: 426 GAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNE 485

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           A  LI++MP +A++++W ALL+ACR H+N  + EIA +KLL LEP     Y+LLSN+ A 
Sbjct: 486 AMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYAS 545

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL-ASKKSHPQTKEIELMLKDMTM 621
             RW++  ++RK M    + K PG S+IE +  +H F      SHP+ + I   L+ +  
Sbjct: 546 QSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGA 605

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
            L+ AGY P+   V+ DVDEE+K   + +HSEK+A+A+GL+     + IR+ KNLR+CGD
Sbjct: 606 SLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGD 665

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A KL++++  REI++RDA RFH FK G CSC DFW
Sbjct: 666 CHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 138/281 (49%), Gaps = 22/281 (7%)

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           +F  + Y++     S+  +    I+ +A+ G ++ A  +F  +  SK+  +W+++++GY 
Sbjct: 2   RFRLIPYRSY--FSSSAAITQCQISYFARLGQIDRARNIFDDL-QSKTVTSWNAIVAGYF 58

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
              +   A++LFD+M +R+ +SW  ++SGY + G  S+A ++F KM    +    V+  +
Sbjct: 59  HNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNV----VSWTS 114

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           ++R  V  G +D  + L  +  E  V    + L   + D     G +D A  +F  IP  
Sbjct: 115 MVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIED-----GRVDEARRLFDMIP-- 167

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           +K V    ++I GL   G    +  +F EM    +    V + +++   +    V+  ++
Sbjct: 168 VKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARK 223

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
            FE M +   K ++  +  M+    R GR++EA  L ++MP
Sbjct: 224 LFEVMPD---KNEVT-WTAMLKGYTRSGRINEAAELFKAMP 260



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L++  S  SL    Q+H Q+V S  +  I  SS LI+ +   G    L   + +F + 
Sbjct: 335 SILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCG---DLVTGKRVFDRF 391

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + +I +WN+++ GY++    ++AL ++  M S G  +P+  TF  VL++C      K G
Sbjct: 392 SSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSG-AAPDEITFIGVLSACGYTGKVKEG 450

Query: 129 CQI 131
            +I
Sbjct: 451 LEI 453


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/658 (34%), Positives = 368/658 (55%), Gaps = 39/658 (5%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  I + N+F W  ++  ++ +       + +  ML +GI +P        L++C    
Sbjct: 32  VFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGI-NPGEVGISIFLSACTDAR 90

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G  I   I+  G+E +  ++ AL+  Y   G+  +A  VF     RD+V+++ ++ 
Sbjct: 91  EITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVA 150

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YA+   P  AL LFR+M    + P+  T V+   AC  L D R G   H  V      +
Sbjct: 151 AYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQ--GI 208

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S +++ TA++N+Y KCG                                +IE A + F 
Sbjct: 209 QSGVVVGTALVNLYGKCG--------------------------------RIEAAAEAFG 236

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           Q+ ++++V+W+A+ + Y++      A+ +  +M+  G+ P+  T V+VL AC  + AL  
Sbjct: 237 QIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQ 296

Query: 364 GKRLHQQ-YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           G+R+H++ ++       ++++ TA+++MY+KCG++  A ++F KI  +L  V L+NS+I+
Sbjct: 297 GRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLV-LWNSLIA 354

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIK 481
             AQHG  E ++ +F  M L GL+P  +TF +VL ACSH G++++G++ F S + ++GI 
Sbjct: 355 TNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIF 414

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+ EH+GCMVDLL R G + ++  L+  MP++ + V W A L ACR +RN      A + 
Sbjct: 415 PEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAEN 474

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L  L+P   A YVLLSNM A+  RW +  ++R+ M      K  G S+IE    +H F++
Sbjct: 475 LFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFIS 534

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
               HP+  EI   L+ +T  +K+AGYVP+T  V+ DV +E KET+V YHSEKLA+AF L
Sbjct: 535 GDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFAL 594

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + +     IR+ KNLR+C DCH A K +S++  REI+VRD  RFH F+ G CSC D+W
Sbjct: 595 LTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 198/403 (49%), Gaps = 47/403 (11%)

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N LI  Y+     ++A  VF G  ++++ S+  ++  +A+ ++       FR M   
Sbjct: 11  FLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQ 70

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            I P         SACT+  +  IG+         L  +G+                   
Sbjct: 71  GINPGEVGISIFLSACTDAREITIGRSIQ------LAILGT------------------- 105

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                    G+ + +   ++++S Y + G    A  +F +M  RD+V+W+AM++ Y++ G
Sbjct: 106 ---------GIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNG 156

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +AL LF +M+  G+ P++VT+V+ L AC  LG L  G  +HQ+ +E       + + 
Sbjct: 157 HPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQR-VEAQGIQSGVVVG 215

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           TA++++Y KCG I+ A   F +I +  K V  +++I +  A++     +I V   M+L G
Sbjct: 216 TALVNLYGKCGRIEAAAEAFGQIVE--KNVVAWSAISAAYARNDRNRDAIRVLHRMDLEG 273

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESM--LNYGIKPQMEHYGCMVDLLARDGRLDE 502
           L P+  TFV+VL AC+    +++G++  E +  L  G++  +     +V++ ++ G L  
Sbjct: 274 LAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLAL 333

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           A  +   + +  + V+W +L+A      NA+ G+   +K L+L
Sbjct: 334 AGNMFDKIAH-LDLVLWNSLIAT-----NAQHGQT--EKALEL 368



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +E + + RN FL   +ID+Y KC   D AL+VF+ I    K V  +  +++  A++   +
Sbjct: 1   MEELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQS--KNVFSWTMMLAAFAENRDFD 58

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
                FR M L G+ P  V     L AC+    +  G+    ++L  GI+ +      +V
Sbjct: 59  RCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALV 118

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            L  + G   +A  +   M +  + V W A++AA
Sbjct: 119 SLYGKLGHCTDAASVFLRMSHR-DVVAWSAMVAA 151


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/549 (40%), Positives = 338/549 (61%), Gaps = 10/549 (1%)

Query: 44  QLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG 103
            LI  +ALS   + + ++  LF QI  P +  WN ++RG+S SD P EA+ +Y  M  +G
Sbjct: 15  NLIKSYALS--PSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQG 72

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           ++  NN T+ F+  +CAR+     G  IH  ++K G E  L++ NALI+ Y   G++  A
Sbjct: 73  LLG-NNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLA 131

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            KVF+    RDLVS+N+L+ GY Q K     L +F  M+ + ++ DA T V +  ACT L
Sbjct: 132 QKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSL 191

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
            +  +       + +N   V  ++ L   +I+MY + GL+++A  VF  M   ++  +W+
Sbjct: 192 GEWGVADAMVDYIEEN--NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQW-RNLVSWN 248

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           +MI GY + G +  AR+LFD M QRD++SWT MI+ YSQ G F++AL LF +M    + P
Sbjct: 249 AMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKP 308

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           DE+T+ +VL AC   G+LD G+  H  YI+      +I++  A+IDMY KCG ++ AL V
Sbjct: 309 DEITVASVLSACAHTGSLDVGEAAHD-YIQKYDVKADIYVGNALIDMYCKCGVVEKALEV 367

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F ++ K  K    + SIISGLA +G  ++++  F  M    ++P    FV +L AC+H G
Sbjct: 368 FKEMRK--KDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAG 425

Query: 464 LVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           LV++G ++FESM   YG+KP+M+HYGC+VDLL+R G L  A+  I+ MP   + VIWR L
Sbjct: 426 LVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRIL 485

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L+A ++H N  + EIA +KLL+L+P +  +YVL SN  A + RWE+A ++R+LM+ S +Q
Sbjct: 486 LSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQ 545

Query: 583 KPPGWSYIE 591
           KP G S IE
Sbjct: 546 KPSGSSCIE 554


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/568 (38%), Positives = 344/568 (60%), Gaps = 11/568 (1%)

Query: 26  QIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           ++H  +V SGL N   + S++I  +AL   ++ L  +  +F QI++P  F+WNTL+RG +
Sbjct: 329 KLHAHLVVSGLHNCQYAMSKVIRSYALQ--QSDLVFAHKVFEQIESPTTFLWNTLLRGLA 386

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           +SD+P++A+V Y     KG+  P+N TFPFVL +CA+  + K G Q+H H+IK G   D+
Sbjct: 387 QSDAPKDAIVFYKKAQEKGM-KPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDI 445

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N+LIH Y+  G +  A  +F+  L +D+VS+N+LI GY+Q       L LF  MQ  
Sbjct: 446 FVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAE 505

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            +Q D  T V + SACT L D  +       + +N   +  ++ L   +I+ Y + G + 
Sbjct: 506 EVQADKVTMVKVISACTHLGDWSMADCMVRYIERNH--IEVDVYLGNTLIDYYCRIGQLQ 563

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            AE+VFS M   K+T   ++MI  Y + G +  A+++FDQ+  +DL+SW++MI  YSQ  
Sbjct: 564 SAEKVFSQMK-DKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 622

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
            FS +LELF +M+   + PD V + +VL AC  LGALD GK +H  Y+       +  + 
Sbjct: 623 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHD-YVRRNNIKTDTIME 681

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            ++IDM+AKCG +  AL VF ++ +  K    +NSII GLA +G  + ++ +F  M   G
Sbjct: 682 NSLIDMFAKCGCMQEALQVFTEMEE--KDTLSWNSIILGLANNGFEDEALNIFYSMLTEG 739

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            +P+ VTF+ VL AC++  LV+EG   FE M   + ++PQM+HYGC+V +L+R G+L++A
Sbjct: 740 PRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKA 799

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
              I  MP   + V+WR LL AC+ H N  + E+A +KL +L+P +   Y+LLSN+ A  
Sbjct: 800 KNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASA 859

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            RW +A  VR+ M D+ ++K P  S ++
Sbjct: 860 DRWSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 204/315 (64%), Gaps = 3/315 (0%)

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           K+  +W+ +I+G+   G+IE AR LFDQM  R++VSWT +I GY++   +++A+ LF  M
Sbjct: 4   KNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHM 63

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
            + GI P E+T++AV+ A   LG +  G+ LH   ++  +   +  +  ++ID+YAK GS
Sbjct: 64  MAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMS-DARVGNSLIDLYAKIGS 122

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  +L VF ++      VS + SIISG A HGL   ++ +F EM   G++P+ +TF++V+
Sbjct: 123 VQNSLKVFDEMLDRRNLVS-WTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVI 181

Query: 457 CACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSHGGLVE+G  FF+SM+  Y I P+++H+GC++D+L R GRL EA  +I+ +P + N
Sbjct: 182 NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVN 241

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
            ++WR LL  C  +   ++G+ A + + DLE + G  + +LSN+L E  R+ +A Q RKL
Sbjct: 242 VIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKL 301

Query: 576 MDDSGIQKPPGWSYI 590
           +D+  I K PG + +
Sbjct: 302 LDERKIVKVPGLALV 316



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 232/479 (48%), Gaps = 32/479 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R+LF Q+   N+  W  L+ GY+R+    EA+ L+  M++ GI SP+  T   V+ + +
Sbjct: 25  ARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGI-SPSEITVLAVVPAIS 83

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-ARDLVSYN 179
            L     G  +H + +K G+  D  + N+LI  Y+  G + N+ KVF+  L  R+LVS+ 
Sbjct: 84  NLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWT 143

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVY- 237
           ++I+G+A       AL LF +M+ + I+P+  TF+++ +AC+       G   F ++VY 
Sbjct: 144 SIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYE 203

Query: 238 -------KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
                  K+ GC          +I+M  + G +  AE++   + +  +   W  ++   +
Sbjct: 204 YNIDPEIKHFGC----------IIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCS 253

Query: 291 REGKIE---RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           + G++E   RA ++   +++     +  + +  +++G FS A +    ++   I      
Sbjct: 254 KYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGL 313

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA-KCGSIDTALSVFYK 406
            + V R+ V + A+   K+LH   + + +     +  + VI  YA +   +  A  VF +
Sbjct: 314 ALVVTRSFVMMEAV---KKLHAHLVVSGLHNCQ-YAMSKVIRSYALQQSDLVFAHKVFEQ 369

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           I     T  L+N+++ GLAQ    + +I  +++ +  G+KPD +TF  VL AC+     +
Sbjct: 370 IES--PTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPK 427

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+Q    ++  G    +     ++ L A  G L  A  +   M    + V W +L+  
Sbjct: 428 EGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK-DVVSWNSLIGG 485



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 37/297 (12%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           N +I  ++ +G I  A  +F+    R++VS+  LI+GY +      A+ LFR M    I 
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGIS 69

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
           P   T +A+  A + L    +G+  H    K    + S+  +  ++I++YAK G +  + 
Sbjct: 70  PSEITVLAVVPAISNLGGILMGEMLHGYCVKK--GIMSDARVGNSLIDLYAKIGSVQNSL 127

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
           +VF  M   ++  +W+S+ISG+   G                                  
Sbjct: 128 KVFDEMLDRRNLVSWTSIISGFAMHGL-------------------------------SV 156

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           +ALELF +M   GI P+ +T ++V+ AC   G ++ G    +  +        I     +
Sbjct: 157 EALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 216

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREME 441
           IDM  + G +  A  +   +P  +  + ++  ++   +++G   +G+ +I +  ++E
Sbjct: 217 IDMLGRAGRLCEAEQIIEGLPVEVNVI-VWRILLGCCSKYGEVEMGKRAIKMISDLE 272


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/704 (34%), Positives = 392/704 (55%), Gaps = 51/704 (7%)

Query: 46  ISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
           I+  A +G   G   +R  F  +       +N L+ GY R+  P  AL L+  M S+ + 
Sbjct: 24  IAHLARAGNIEG---ARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 106 SPNNFTFPFVL------NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI-------- 151
           S N       L      ++ A L+S          ++ F      ++R+ L+        
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIP----FPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 152 ------HF-YSIF-------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                 H  Y++        G +N A ++F+    RD+V++  +++GY Q      A  L
Sbjct: 137 QMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARAL 196

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +M       +  ++ AM S   +  +  + ++   V+ +       N +  TA++  Y
Sbjct: 197 FDEMPKR----NVVSWTAMISGYAQNGEVNLARKLFEVMPER------NEVSWTAMLVGY 246

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            + G +  A  +F+ M      AA ++M+ G+ + G ++ A+ +F++M +RD  +W+AMI
Sbjct: 247 IQAGHVEDAAELFNAMP-EHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMI 305

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
             Y Q     +AL  F +M   G+ P+  +++++L  C  L  LD+G+ +H   +    F
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSF 364

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++F  +A+I MY KCG++D A  VF+      K + ++NS+I+G AQHGLGE ++ +F
Sbjct: 365 DMDVFAVSALITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHGLGEQALGIF 422

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
            +M L G+ PDG+T++  L ACS+ G V+EG++ F SM +N  I+P  EHY CMVDLL R
Sbjct: 423 HDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR 482

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G ++EA+ LI++MP + ++VIW AL+ ACR+HRNA+I E+A +KLL+LEP +   YVLL
Sbjct: 483 SGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLL 542

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK-SHPQTKEIELM 615
           S++     RWE+A ++RK +    + K PG S+IE++  +H F +    +HP+   I  +
Sbjct: 543 SHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRI 602

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+ +   L  +GY  +   V+ D+DEE+K   + YHSE+ A+A+GL+       IR+ KN
Sbjct: 603 LEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKN 662

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+CGDCH A KL+++I  REI++RDA RFH FK G CSC D+W
Sbjct: 663 LRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/461 (22%), Positives = 206/461 (44%), Gaps = 61/461 (13%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           NA I   +  G I  A   FE    R   SYN L+ GY + + P  AL LFR+M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 208 PDAFTFVAMFSACTELND--PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
            D  ++ A+ S  +      P       ++ +        +++  T+++  Y + GL+  
Sbjct: 78  -DLASYNALISGLSLRRQTLPDAAAALASIPFP------PSVVSFTSLLRGYVRHGLLAD 130

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A R+F  M   ++  +++ ++ G    G++  AR+LFD+M  RD+V+WTAM+SGY Q G 
Sbjct: 131 AIRLFQQMP-ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGR 189

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
            ++A  LF +M    +    V+  A++      G ++  ++L +   E     RN    T
Sbjct: 190 ITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPE-----RNEVSWT 240

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET------------- 432
           A++  Y + G ++ A  +F  +P++   V+  N+++ G  Q G+ +              
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEH--PVAACNAMMVGFGQRGMVDAAKTVFEKMRERDD 298

Query: 433 ------------------SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
                             +++ FREM   G++P+  + +++L  C+   +++ G++   +
Sbjct: 299 GTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAA 358

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLH--RN 531
           ML       +     ++ +  + G LD+A  +  +  P D   V+W +++     H    
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDI--VMWNSMITGYAQHGLGE 416

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
             +G     +L  + PD G  Y+      + T + +E R++
Sbjct: 417 QALGIFHDMRLAGMSPD-GITYIGALTACSYTGKVKEGREI 456



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 175/433 (40%), Gaps = 64/433 (14%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           +H+S + L+     +G  N    +R LF ++ + ++  W  ++ GY ++    EA  L+ 
Sbjct: 142 NHVSYTVLLGGLLDAGRVN---EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSS---------------------FKSG-CQIHCHI 135
            M  + +VS       +  N    L+                       ++G  +    +
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAEL 258

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
                E  +   NA++  +   G ++ A  VFE    RD  +++ +I  Y Q +    AL
Sbjct: 259 FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVI 254
             FR+M    ++P+  + +++ + C  L     G++ HA +   L C    ++   +A+I
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM---LRCSFDMDVFAVSALI 375

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
            MY KCG ++ A+RVF T    K    W+SMI+GY + G  E                  
Sbjct: 376 TMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMITGYAQHGLGE------------------ 416

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                        QAL +F  M   G+ PD +T +  L AC   G +  G+ +      N
Sbjct: 417 -------------QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                     + ++D+  + G ++ A  +   +P     V ++ +++     H   E  I
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAV-IWGALMGACRMHRNAE--I 520

Query: 435 AVFREMELMGLKP 447
           A     +L+ L+P
Sbjct: 521 AEVAAKKLLELEP 533


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/652 (36%), Positives = 369/652 (56%), Gaps = 55/652 (8%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT-FPFVLNSCARLSSFKSGCQ 130
           NI I +T +R         EAL+    M  +G+    NF  +  VLN C R  + + G +
Sbjct: 34  NIHIHDTRLR---------EALL---HMALRGL--DTNFQDYNTVLNECLRKRAIREGQR 79

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H H+IK      +++R  LI FY     + +A  VF+    R++VS+  +I+ Y+Q   
Sbjct: 80  VHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGY 139

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF +M  S  +P+ FTF  + ++C   +   +G+Q H+ + K            
Sbjct: 140 ASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIK------------ 187

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
                       +N    V+            SS++  Y ++GKI  AR +F  + +RD+
Sbjct: 188 ------------LNYEAHVY----------VGSSLLDMYAKDGKIHEARGIFQCLPERDV 225

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VS TA+ISGY+Q+G   +ALELF +++  G+  + VT  +VL A  GL ALD GK++H  
Sbjct: 226 VSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNH 285

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            + + V    + L  ++IDMY+KCG++  A  +F  + +  +TV  +N+++ G ++HG G
Sbjct: 286 LLRSEV-PSYVVLQNSLIDMYSKCGNLTYARRIFDTLHE--RTVISWNAMLVGYSKHGEG 342

Query: 431 ETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN--YGIKPQMEHY 487
              + +F  M +   +KPD VT + VL  CSHGGL ++G   F  M +    ++P  +HY
Sbjct: 343 REVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHY 402

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GC+VD+L R GR++ A+  ++ MP++ ++ IW  LL AC +H N  IGE  G +LL +EP
Sbjct: 403 GCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEP 462

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           ++  +YV+LSN+ A   RWE+ R +R LM    + K PG S+IE +  LH F AS  SHP
Sbjct: 463 ENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHP 522

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           + +E+   +++++ + K AGYVP+   V+ DVDEE+KE ++  HSEKLAL FGLI +   
Sbjct: 523 RREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPES 582

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IR+ KNLRIC DCH   K  S+IY RE+ +RD  RFH    G CSC D+W
Sbjct: 583 VPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 184/337 (54%), Gaps = 21/337 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHIS----SSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           +++++  ++H  ++ +   H++      ++LI F+    C + L  +R +F  +   N+ 
Sbjct: 72  RAIREGQRVHAHMIKT---HYLPCVYLRTRLIVFYV--KC-DSLRDARHVFDVMPERNVV 125

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            W  ++  YS+     +AL L+  ML  G   PN FTF  VL SC   S F  G QIH H
Sbjct: 126 SWTAMISAYSQRGYASQALSLFVQMLRSG-TEPNEFTFATVLTSCIGSSGFVLGRQIHSH 184

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           IIK   E  +++ ++L+  Y+  G I+ A  +F+    RD+VS   +I+GYAQ+     A
Sbjct: 185 IIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEA 244

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L LFR++Q   +Q +  T+ ++ +A + L     GKQ H  + ++   V S ++L+ ++I
Sbjct: 245 LELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSE--VPSYVVLQNSLI 302

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-DQR----D 309
           +MY+KCG +  A R+F T+   ++  +W++M+ GY++ G+     +LF+ M D+     D
Sbjct: 303 DMYSKCGNLTYARRIFDTL-HERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPD 361

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMES--LGIHPD 344
            V+  A++SG S  G   + +++F  M S  + + PD
Sbjct: 362 SVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPD 398


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/642 (36%), Positives = 365/642 (56%), Gaps = 56/642 (8%)

Query: 97  TSMLSKGI----------VSPNNFTFPF--------VLNSCARLSSFKSGCQIHCHIIKF 138
           TS LS+ I          VSP  ++  F        +L  CAR  +       H  II+ 
Sbjct: 31  TSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRI 90

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
            LE D+ + N LI+ YS  G++  A +VF+G L R LVS+NT+I  Y + +    AL +F
Sbjct: 91  DLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIF 150

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M++   +   FT  ++ SAC    D    K+ H +  K   C+  N+ + TA++++YA
Sbjct: 151 LEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT--CIDLNLYVGTALLDLYA 208

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG+                                I+ A Q+F+ M  +  V+W++M++
Sbjct: 209 KCGM--------------------------------IKDAVQVFESMQDKSSVTWSSMVA 236

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           GY Q   + +AL L+ + + + +  ++ T+ +V+ AC  L AL  GK++H   I    FG
Sbjct: 237 GYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA-VICKSGFG 295

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
            N+F+ ++ +DMYAKCGS+  +  +F ++ +  K + L+N+IISG A+H   +  + +F 
Sbjct: 296 SNVFVASSAVDMYAKCGSLRESYIIFSEVQE--KNLELWNTIISGFAKHARPKEVMILFE 353

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARD 497
           +M+  G+ P+ VTF ++L  C H GLVEEG++FF+ M   YG+ P + HY CMVD+L R 
Sbjct: 354 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRA 413

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           G L EAY LI+S+P+D  + IW +LLA+CR+++N ++ E+A +KL +LEP++  ++VLLS
Sbjct: 414 GLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLS 473

Query: 558 NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
           N+ A   +WEE  + RKL+ D  ++K  G S+I+    +H F   +  HP+ +EI   L 
Sbjct: 474 NIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLD 533

Query: 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           ++ +K +  GY P+    + DV+  +KE ++  HSEKLAL FGL+       +RI KNLR
Sbjct: 534 NLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLR 593

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IC DCH   K  S   RR I+VRD  RFH F  G+CSC DFW
Sbjct: 594 ICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 207/433 (47%), Gaps = 50/433 (11%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR-SRILFSQID 69
           +L L     ++ +A   HG+I+   L   ++   L++    +  K G    +R +F  + 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVT---LLNVLINAYSKCGFVELARQVFDGML 123

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             ++  WNT++  Y+R+    EAL ++  M ++G    + FT   VL++C          
Sbjct: 124 ERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGF-KFSEFTISSVLSACGVNCDALECK 182

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++HC  +K  ++ +L++  AL+  Y+  G I +A +VFE    +  V++++++ GY Q K
Sbjct: 183 KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNK 242

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               AL L+R+ Q   ++ + FT  ++  AC+ L     GKQ HAV+ K+    GSN+ +
Sbjct: 243 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS--GFGSNVFV 300

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            ++ ++MYAKCG +  +  +FS +   K+   W+++ISG+ +  + +    LF++M Q  
Sbjct: 301 ASSAVDMYAKCGSLRESYIIFSEV-QEKNLELWNTIISGFAKHARPKEVMILFEKMQQD- 358

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                                         G+HP+EVT  ++L  C   G ++ G+R  +
Sbjct: 359 ------------------------------GMHPNEVTFSSLLSVCGHTGLVEEGRRFFK 388

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
                     N+   + ++D+  + G +  A  +   IP +  T S++ S+++       
Sbjct: 389 LMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD-PTASIWGSLLA------- 440

Query: 430 GETSIAVFREMEL 442
              S  V++ +EL
Sbjct: 441 ---SCRVYKNLEL 450



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 10/133 (7%)

Query: 2   KRLVLEH-----SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCK 55
           +R+ LE      SS++    +  +L +  Q+H  I  SG   ++  +S  +  +A  G  
Sbjct: 255 QRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCG-- 312

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             L  S I+FS++   N+ +WNT++ G+++   P+E ++L+  M   G+  PN  TF  +
Sbjct: 313 -SLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGM-HPNEVTFSSL 370

Query: 116 LNSCARLSSFKSG 128
           L+ C      + G
Sbjct: 371 LSVCGHTGLVEEG 383


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/703 (33%), Positives = 380/703 (54%), Gaps = 42/703 (5%)

Query: 19  KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           K L +  Q+H  ++  G L +   S+  ++ ++  G    L  +  LF ++   N+  W 
Sbjct: 89  KELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCG---ELDYTIKLFDKMSQRNMVSWT 145

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           +++ G++ +   QEAL  +  M  +G ++   F    VL +C  L + + G Q+HC ++K
Sbjct: 146 SIITGFAHNSRFQEALSSFCQMRIEGEIA-TQFALSSVLQACTSLGAIQFGTQVHCLVVK 204

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
            G   +LF+ + L   YS  G +++A K FE    +D V + ++I+G+ +  +   AL  
Sbjct: 205 CGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTA 264

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           + KM    +  D     +  SAC+ L     GK  HA + K LG       +  A+ +MY
Sbjct: 265 YMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILK-LG-FEYETFIGNALTDMY 322

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
           +K G M  A  VF                                   D   +VS TA+I
Sbjct: 323 SKSGDMVSASNVFQI-------------------------------HSDCISIVSLTAII 351

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            GY ++    +AL  F  +   GI P+E T  ++++AC     L+ G +LH Q ++   F
Sbjct: 352 DGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK-FNF 410

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
            R+ F+++ ++DMY KCG  D ++ +F +I +N   ++ +N+++   +QHGLG  +I  F
Sbjct: 411 KRDPFVSSTLVDMYGKCGLFDHSIQLFDEI-ENPDEIA-WNTLVGVFSQHGLGRNAIETF 468

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
             M   GLKP+ VTFV +L  CSH G+VE+G  +F SM   YG+ P+ EHY C++DLL R
Sbjct: 469 NGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGR 528

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+L EA   I +MP++ N   W + L AC++H + +  + A  KL+ LEP++   +VLL
Sbjct: 529 AGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLL 588

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A+  +WE+ + +RK++ D  + K PG+S+++     H F     SHPQ KEI   L
Sbjct: 589 SNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKL 648

Query: 617 KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
            ++  ++K  GYVP T  V+ D+D+  KE ++ YHSE++A+AF L+   +   I + KNL
Sbjct: 649 DNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNL 708

Query: 677 RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           R+C DCH A K +S++  R I+VRD  RFH F  G+CSC D+W
Sbjct: 709 RVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 192/429 (44%), Gaps = 48/429 (11%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           T   ++ + AR      G Q+H  +I+ G   + F+ N  ++ YS  G ++   K+F+  
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKM 136

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             R++VS+ ++I G+A       AL  F +M+        F   ++  ACT L   + G 
Sbjct: 137 SQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGT 196

Query: 231 QFHAVVYK-NLGC---VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           Q H +V K   GC   VGSN+       +MY+KCG ++ A + F  M   K    W+SMI
Sbjct: 197 QVHCLVVKCGFGCELFVGSNL------TDMYSKCGELSDACKAFEEMP-CKDAVLWTSMI 249

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
            G+ + G                                F +AL  + KM +  +  D+ 
Sbjct: 250 DGFVKNGD-------------------------------FKKALTAYMKMVTDDVFIDQH 278

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
            + + L AC  L A  FGK LH   ++ + F    F+  A+ DMY+K G + +A +VF  
Sbjct: 279 VLCSTLSACSALKASSFGKSLHATILK-LGFEYETFIGNALTDMYSKSGDMVSASNVFQI 337

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
               +  VSL  +II G  +    E +++ F ++   G++P+  TF +++ AC++   +E
Sbjct: 338 HSDCISIVSL-TAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLE 396

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
            G Q    ++ +  K        +VD+  + G  D +  L   +  + + + W  L+   
Sbjct: 397 HGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVF 455

Query: 527 RLH---RNA 532
             H   RNA
Sbjct: 456 SQHGLGRNA 464



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%)

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           +N H V EG    +++S++ L N +              K+ D+         +  ++  
Sbjct: 44  SNKHFVLEG--VEEIISFSFLKNLFGSG----------HKLSDT---KTVAHLIQTYART 88

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            ELN    GKQ HA++ +  GC+  N  L    +N+Y+KCG                   
Sbjct: 89  KELNK---GKQLHAMLIRG-GCL-PNTFLSNHFLNLYSKCG------------------- 124

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
                        +++   +LFD+M QR++VSWT++I+G++    F +AL  F +M   G
Sbjct: 125 -------------ELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEG 171

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
               +  + +VL+AC  LGA+ FG ++H   ++   FG  +F+ + + DMY+KCG +  A
Sbjct: 172 EIATQFALSSVLQACTSLGAIQFGTQVHCLVVK-CGFGCELFVGSNLTDMYSKCGELSDA 230

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
              F ++P   K   L+ S+I G  ++G  + ++  + +M    +  D     + L ACS
Sbjct: 231 CKAFEEMP--CKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
                  GK    ++L  G + +      + D+ ++ G +  A  + Q
Sbjct: 289 ALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQ 336



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRI-L 64
           +  +L+++C +   L+   Q+HGQ+V          SS L+  +     K GLF   I L
Sbjct: 381 TFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYG----KCGLFDHSIQL 436

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F +I+NP+   WNTL+  +S+    + A+  +  M+ +G+  PN  TF  +L  C+    
Sbjct: 437 FDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGL-KPNAVTFVNLLKGCSHAGM 495

Query: 125 FKSG 128
            + G
Sbjct: 496 VEDG 499


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/630 (38%), Positives = 355/630 (56%), Gaps = 23/630 (3%)

Query: 105  VSPNNFTFPFVLNSCARLSSFKSGCQI---HCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
            VS +N   P + +    L S      +   H H++  G         A +   +   +++
Sbjct: 1201 VSQSNMMRPLLRDPTTLLPSLAEASHLRALHAHLVVSGRLASPSHLAAFLASLASSNHLS 1260

Query: 162  NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
             A  V     A  L+++N  I   A+   PC A   FR   D  + PD ++   +  A T
Sbjct: 1261 YARLVLPQRPA-TLLAHNAFIRALARGPRPCLAFAAFR---DLPLPPDHYSLNFLVRAAT 1316

Query: 222  ELNDPRIG-KQFHAVVYKNLGCV-----------GSNMLLKTAVINMYAKCGLMNMAERV 269
             L       K   A V   L  V            ++  +++ V++MYA  G +  +   
Sbjct: 1317 ALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAA 1376

Query: 270  FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
            F+ +         ++M++     G ++ AR LFD M QRD V+W+AMI+GY  VG   +A
Sbjct: 1377 FAEIACPDVVCV-TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREA 1435

Query: 330  LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
            L LF +M S G    E T+V+VL AC  +G LD GK +H  Y+ +     +I L TA++D
Sbjct: 1436 LMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHW-YVRSRGMQMSIKLGTALVD 1494

Query: 390  MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
            MY+KCG++ TA+ VF  + +  + V  + S +SGLA +G+G   + +F+ ME  G++P+G
Sbjct: 1495 MYSKCGAVVTAMEVFESMAE--RNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNG 1552

Query: 450  VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
            V+FV VL  CS  GLV+EG+  F+SM  YG+ P  EHYGCMVDL  R GRLD+A   I  
Sbjct: 1553 VSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFIND 1612

Query: 510  MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
            MP + +  +W ALL A R+H +  +G+ A  KLL +E ++ A +V LSN+ AE+  W+  
Sbjct: 1613 MPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGV 1672

Query: 570  RQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYV 629
             +VR +M   G++K PGWS IE +G +H F    + HP+  EIELML +M  +L+  GY 
Sbjct: 1673 SRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYT 1732

Query: 630  PNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLL 689
             NT +V+FD++EEEKE  +S HSEKLALAFGLI       IRI KNLR+C DCH   KL+
Sbjct: 1733 ANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLV 1792

Query: 690  SEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            S+++ REI++RD  RFH FK G CSC D+W
Sbjct: 1793 SKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 144/318 (45%), Gaps = 12/318 (3%)

Query: 61   SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            +R LF  +   +   W+ ++ GY      +EAL+L+  MLS G  +    T   VL +CA
Sbjct: 1404 ARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAG-TTVGEATLVSVLTACA 1462

Query: 121  RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            ++ +   G  +H ++   G++  + +  AL+  YS  G +  A +VFE    R++ ++ +
Sbjct: 1463 QIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTS 1522

Query: 181  LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
             ++G A        L LF++M+ + IQP+  +FVA+   C+       G+      + ++
Sbjct: 1523 AVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGR----ACFDSM 1578

Query: 241  GCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
               G +   +    ++++Y + G ++ A    + M M      W ++++       ++  
Sbjct: 1579 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 1638

Query: 299  RQLFDQM---DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            +   D++   +  +  +   + + Y++   +     + G M++ G+   +V   + +   
Sbjct: 1639 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGV--KKVPGWSTIEVD 1696

Query: 356  VGLGALDFGKRLHQQYIE 373
              +     G RLH +Y E
Sbjct: 1697 GKVHEFYVGGRLHPRYNE 1714


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/688 (34%), Positives = 381/688 (55%), Gaps = 48/688 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++ +  I  WN+++ GY +++ P+EA  L+  M  +  VS N     +V N   
Sbjct: 35  ARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMV 94

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
             +          +++ +          A++  Y   G ++ A  +F     +++VS+  
Sbjct: 95  SEARKAFDTMPERNVVSW---------TAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTV 145

Query: 181 LINGYAQVKEPCPALWLF---------------------------RKMQDSCIQPDAFTF 213
           ++ G  QV+    A  LF                           R++ D   + +  ++
Sbjct: 146 MLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISW 205

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             M S   +     + ++   V+ +       N +  TA++  Y + G +  A  +F  M
Sbjct: 206 TTMISGYVQNGQVDVARKLFEVMPEK------NEVSWTAMLMGYTQGGRIEEASELFDAM 259

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
            + K+  A ++MI G+ + G++ +ARQ+FDQ+ ++D  +W+AMI  Y + G   +AL LF
Sbjct: 260 PV-KAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLF 318

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M+  G+  +  ++++VL  C  L +LD G+++H + +++  F  ++F+ + +I MY K
Sbjct: 319 ALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS-QFDSDVFVASVLITMYVK 377

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG +  A  +F +     K + ++NSII+G AQHGL E ++ VF EM   G+  DGVTFV
Sbjct: 378 CGDLVKARQIFDRFSP--KDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFV 435

Query: 454 TVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            VL ACS+ G V+EG + FESM + Y ++P+ EHY CMVDLL R G +++A  LIQ MP 
Sbjct: 436 GVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPV 495

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           +A+++IW ALL ACR H N  + E+A +KLL LEP +   Y+LLSN+ A   RW +  ++
Sbjct: 496 EADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAEL 555

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLAS-KKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           R+ M    + K PG S+IE    +H F       HP+   I  ML+ +   L+ AGY P+
Sbjct: 556 RRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPD 615

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           +  V+ DVDEEEK   + +HSE+LA+AFGL+       IR+ KNLR+CGDCH A KL+++
Sbjct: 616 SSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAK 675

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I  REI++RDA RFH FK G CSC D+W
Sbjct: 676 ITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 165/337 (48%), Gaps = 32/337 (9%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           N+ I  Y+  G I +A +VF+    + +VS+N+++ GY Q   P  A +LF KM +    
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER--- 76

Query: 208 PDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            +  ++  + S   +   +++ R  K F  +  +N+       +  TA++  Y + GL++
Sbjct: 77  -NTVSWNGLISGYVKNRMVSEAR--KAFDTMPERNV-------VSWTAMVRGYVQEGLVS 126

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
            AE +F  M   K+  +W+ M+ G  +  +I+ AR LFD M  +D+V+ T MISGY Q G
Sbjct: 127 EAETLFWQMP-EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEG 185

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
             ++A ELF +M    +    ++   ++   V  G +D  ++L +     V+  +N    
Sbjct: 186 RLAEARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFE-----VMPEKNEVSW 236

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           TA++  Y + G I+ A  +F  +P  +K V   N++I G  Q+G    +  VF ++    
Sbjct: 237 TAMLMGYTQGGRIEEASELFDAMP--VKAVVACNAMILGFGQNGEVAKARQVFDQIR--- 291

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
            K DG T+  ++      G   E    F  M   G++
Sbjct: 292 EKDDG-TWSAMIKVYERKGFEVEALNLFALMQREGVQ 327



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 5/234 (2%)

Query: 55  KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           +NG + ++R +F QI   +   W+ +++ Y R     EAL L+  M  +G+ S N  +  
Sbjct: 276 QNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQS-NFPSLI 334

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            VL+ CA L+S   G Q+H  ++K   + D+F+ + LI  Y   G +  A ++F+    +
Sbjct: 335 SVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPK 394

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-F 232
           D+V +N++I GYAQ      AL +F +M  S +  D  TFV + SAC+     + G + F
Sbjct: 395 DIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIF 454

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            ++  K L  V         ++++  + GL+N A  +   M +      W +++
Sbjct: 455 ESMKSKYL--VEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 141/306 (46%), Gaps = 25/306 (8%)

Query: 40  ISSSQLISFFALSGCKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTS 98
           ++ + +IS +    C+ G L  +R LF ++   N+  W T++ GY ++     A  L+  
Sbjct: 172 VARTNMISGY----CQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEV 227

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF-GLEFDLFIR-NALIHFYSI 156
           M  K  VS             A L  +  G +I      F  +     +  NA+I  +  
Sbjct: 228 MPEKNEVS-----------WTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQ 276

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +  A +VF+    +D  +++ +I  Y +      AL LF  MQ   +Q +  + +++
Sbjct: 277 NGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISV 336

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            S C  L     G+Q HA + K+     S++ + + +I MY KCG +  A ++F      
Sbjct: 337 LSVCASLASLDHGRQVHAELVKSQ--FDSDVFVASVLITMYVKCGDLVKARQIFDRFS-P 393

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISGYSQVGGFSQALEL 332
           K    W+S+I+GY + G +E A Q+F +M       D V++  ++S  S  G   + LE+
Sbjct: 394 KDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEI 453

Query: 333 FGKMES 338
           F  M+S
Sbjct: 454 FESMKS 459



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 24/263 (9%)

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I  YA+ G +  A RVF  M   K   +W+SM++GY +  +   AR LFD+M +R+ VSW
Sbjct: 23  IARYARIGQIESARRVFDEMP-DKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSW 81

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
             +ISGY +    S+A + F  M    +    V+  A++R  V  G +   + L  Q  E
Sbjct: 82  NGLISGYVKNRMVSEARKAFDTMPERNV----VSWTAMVRGYVQEGLVSEAETLFWQMPE 137

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
                +N+   T ++    +   ID A  +F  +P  +K V    ++ISG  Q G    +
Sbjct: 138 -----KNVVSWTVMLGGLIQVRRIDEARGLFDIMP--VKDVVARTNMISGYCQEGRLAEA 190

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH--YGCMV 491
             +F EM     + + +++ T++      G V+  ++ FE M      P+     +  M+
Sbjct: 191 RELFDEMP----RRNVISWTTMISGYVQNGQVDVARKLFEVM------PEKNEVSWTAML 240

Query: 492 DLLARDGRLDEAYGLIQSMPYDA 514
               + GR++EA  L  +MP  A
Sbjct: 241 MGYTQGGRIEEASELFDAMPVKA 263



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 119/243 (48%), Gaps = 20/243 (8%)

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           A++S I+ Y R G+IE AR++FD+M  + +VSW +M++GY Q     +A  LF KM    
Sbjct: 18  AYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP--- 74

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
              + V+   ++   V    +   ++      E     RN+   TA++  Y + G +  A
Sbjct: 75  -ERNTVSWNGLISGYVKNRMVSEARKAFDTMPE-----RNVVSWTAMVRGYVQEGLVSEA 128

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
            ++F+++P+  K V  +  ++ GL Q    + +  +F   ++M +K D V    ++    
Sbjct: 129 ETLFWQMPE--KNVVSWTVMLGGLIQVRRIDEARGLF---DIMPVK-DVVARTNMISGYC 182

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             G + E ++ F+ M    +      +  M+    ++G++D A  L + MP + N V W 
Sbjct: 183 QEGRLAEARELFDEMPRRNVI----SWTTMISGYVQNGQVDVARKLFEVMP-EKNEVSWT 237

Query: 521 ALL 523
           A+L
Sbjct: 238 AML 240



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L++  S  SL    Q+H ++V S  +  +  +S LI+ +   G    L ++R +F + 
Sbjct: 335 SVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCG---DLVKARQIFDRF 391

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +I +WN+++ GY++    +EAL ++  M S G+ + +  TF  VL++C+     K G
Sbjct: 392 SPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMAT-DGVTFVGVLSACSYTGKVKEG 450

Query: 129 CQI 131
            +I
Sbjct: 451 LEI 453


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 360/639 (56%), Gaps = 49/639 (7%)

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
           P + +S   LS + S    H H  +F    ++   N LI  Y   G I++A +VFE    
Sbjct: 14  PLLTSSFVTLSKYVSS---HTHQHEFN-NNNVIASNKLIASYVRCGDIDSAVRVFEDMKV 69

Query: 173 RDLVSYNTLINGYAQV------------KEPCPALWLF----------------RKMQDS 204
           +  V++N+++  +A+             K P P    +                R   DS
Sbjct: 70  KSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDS 129

Query: 205 CIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
               D  ++  M SA  +   + + R  + F A+  KN  CV       +A+++ Y  CG
Sbjct: 130 MPLKDVASWNTMISALAQVGLMGEAR--RLFSAMPEKN--CVSW-----SAMVSGYVACG 180

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            ++ A   F    M +S   W++MI+GY + G++E A +LF +M  R LV+W AMI+GY 
Sbjct: 181 DLDAAVECFYAAPM-RSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYV 239

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           + G     L LF  M   G+ P+ +++ +VL  C  L AL  GK++HQ  +       + 
Sbjct: 240 ENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQ-LVCKCPLSSDT 298

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
              T+++ MY+KCG +  A  +F +IP+  K V  +N++ISG AQHG G+ ++ +F EM+
Sbjct: 299 TAGTSLVSMYSKCGDLKDAWELFIQIPR--KDVVCWNAMISGYAQHGAGKKALRLFDEMK 356

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRL 500
             GLKPD +TFV VL AC+H GLV+ G Q+F +M  ++GI+ + EHY CMVDLL R G+L
Sbjct: 357 KEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKL 416

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
            EA  LI+SMP+  +  I+  LL ACR+H+N  + E A + LL+L+P     YV L+N+ 
Sbjct: 417 SEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVY 476

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           A   RW+    +R+ M D+ + K PG+S+IE N  +H F +S + HP+   I   LKD+ 
Sbjct: 477 AAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLE 536

Query: 621 MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
            K+K AGYVP+   V+ DV EE KE ++ +HSEKLA+AFGL+       IR+ KNLR+CG
Sbjct: 537 KKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCG 596

Query: 681 DCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           DCH A K +S I  REI+VRD  RFH FK G CSC D+W
Sbjct: 597 DCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 45/353 (12%)

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           G+  +R  F  +   ++  WNT++   ++     EA  L+++M  K  VS +     +V 
Sbjct: 119 GVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYV- 177

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +C  L +      + C          +    A+I  Y  FG +  A ++F+    R LV
Sbjct: 178 -ACGDLDA-----AVECFYA--APMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLV 229

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N +I GY +       L LFR M ++ ++P+A +  ++   C+ L+  ++GKQ H +V
Sbjct: 230 TWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLV 289

Query: 237 YKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            K   C + S+    T++++MY+KCG +  A  +F  +   K    W++MISGY + G  
Sbjct: 290 CK---CPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKDVVCWNAMISGYAQHGAG 345

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           ++A +LFD+M +                                G+ PD +T VAVL AC
Sbjct: 346 KKALRLFDEMKKE-------------------------------GLKPDWITFVAVLLAC 374

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
              G +D G +       +            ++D+  + G +  A+ +   +P
Sbjct: 375 NHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMP 427



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 2/225 (0%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++    +  WN ++ GY  +   ++ L L+ +ML  G V PN  +   VL  C+ LS
Sbjct: 219 LFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETG-VKPNALSLTSVLLGCSNLS 277

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G Q+H  + K  L  D     +L+  YS  G + +A ++F     +D+V +N +I+
Sbjct: 278 ALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMIS 337

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ      AL LF +M+   ++PD  TFVA+  AC       +G Q+   + ++ G +
Sbjct: 338 GYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFG-I 396

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            +       ++++  + G ++ A  +  +M      A + +++  
Sbjct: 397 ETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGA 441


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/692 (37%), Positives = 382/692 (55%), Gaps = 56/692 (8%)

Query: 33  HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEA 92
           H   N H+SS   +SF +L+   N       L + I   N    N L++   +  + ++A
Sbjct: 18  HLCYNSHVSSRVPVSFVSLNPSAN-------LMNDIKGNN----NQLIQSLCKGGNLKQA 66

Query: 93  LVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
           + L          +P   TF  ++ SCA+ +S   G  +H  ++  G + D F+   LI+
Sbjct: 67  IHLLCCE-----PNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLIN 121

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y   G I+ A KVF+ +  R +  +N L    A V      L L+ +M    I  D FT
Sbjct: 122 MYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFT 181

Query: 213 FVAMFSAC--TELNDPRI--GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           +  +  AC  +EL+   +  GK+ HA + ++     +N+ + T ++++YAK G ++ A  
Sbjct: 182 YTFVLKACVVSELSVSPLQKGKEIHAHILRH--GYEANIHVMTTLLDVYAKFGSVSYANS 239

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           VF  M  +K+  +WS+MI+ + +     +A +LF  M          M+  +  V     
Sbjct: 240 VFCAMP-TKNFVSWSAMIACFAKNEMPMKALELFQLM----------MLEAHDSV----- 283

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
                         P+ VTMV VL+AC GL AL+ GK +H  YI        + +  A+I
Sbjct: 284 --------------PNSVTMVNVLQACAGLAALEQGKLIH-GYILRRGLDSILPVLNALI 328

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
            MY +CG I     VF  + KN   VS +NS+IS    HG G+ +I +F  M   G  P 
Sbjct: 329 TMYGRCGEILMGQRVFDNM-KNRDVVS-WNSLISIYGMHGFGKKAIQIFENMIHQGSSPS 386

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            ++F+TVL ACSH GLVEEGK  FESML+ Y I P MEHY CMVDLL R  RLDEA  LI
Sbjct: 387 YISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLI 446

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
           + M ++    +W +LL +CR+H N ++ E A   L +LEP +  +YVLL+++ AE   W 
Sbjct: 447 EDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWS 506

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           EA+ V KL++  G+QK PG S+IE    ++ F++  + +PQ +EI  +L  ++ ++K+ G
Sbjct: 507 EAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQG 566

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           YVP T  V++D+DEEEKE +V  HSEKLA+AFGLIN+   ETIRI KNLR+C DCH   K
Sbjct: 567 YVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTK 626

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +S+   REI+VRD  RFH FK G CSC D+W
Sbjct: 627 FISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 156/333 (46%), Gaps = 13/333 (3%)

Query: 17  SCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           S   L++  +IH  I+  G   N H+ ++ L+  +A  G    +  +  +F  +   N  
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTT-LLDVYAKFG---SVSYANSVFCAMPTKNFV 250

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVS-PNNFTFPFVLNSCARLSSFKSGCQIHC 133
            W+ ++  +++++ P +AL L+  M+ +   S PN+ T   VL +CA L++ + G  IH 
Sbjct: 251 SWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHG 310

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
           +I++ GL+  L + NALI  Y   G I    +VF+    RD+VS+N+LI+ Y        
Sbjct: 311 YILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKK 370

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK-QFHAVVYKNLGCVGSNMLLKTA 252
           A+ +F  M      P   +F+ +  AC+       GK  F +++ K    +   M     
Sbjct: 371 AIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYR--IHPGMEHYAC 428

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFDQMDQRD 309
           ++++  +   ++ A ++   M        W S++        +   ERA  L  +++ R+
Sbjct: 429 MVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRN 488

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
             ++  +   Y++   +S+A  +   +E+ G+ 
Sbjct: 489 AGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQ 521


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 360/631 (57%), Gaps = 62/631 (9%)

Query: 99  MLSKGIVSPNNFT-----FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153
           + S  +  PN  T      P +++   + ++ K   QI  + IK   + +  +    I+F
Sbjct: 8   LTSFSLTKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINF 67

Query: 154 YS---IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
            +       + +AH++F+     ++V +NT+  GYA++ +P   +  FR+    C++   
Sbjct: 68  CTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRR----CLR--- 120

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
              V+   A  E      GKQ H    K LG V  NM +   +INMY  C          
Sbjct: 121 --LVSKVKALAE------GKQLHCFAVK-LG-VSDNMYVVPTLINMYTAC---------- 160

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                                 G I+ +R++FD++D+  +V++ A+I   ++    ++AL
Sbjct: 161 ----------------------GDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEAL 198

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
            LF +++ +G+ P +VTM+ VL +C  LG+LD G+ +H+ Y++   F R + + T +IDM
Sbjct: 199 ALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHE-YVKKYGFDRYVKVNTTLIDM 257

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           YAKCGS+D A++VF  +PK  +    +++II   A HG G  +I++  EM+   ++PD +
Sbjct: 258 YAKCGSLDDAVNVFRDMPK--RDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEI 315

Query: 451 TFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           TF+ +L ACSH GLVEEG ++F  M N YGI P ++HYGCMVDLL R GRLDEAY  I  
Sbjct: 316 TFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDE 375

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
           +P     ++WR LL+AC  H N ++G+   +++ +L+  HG  YV+ SN+ A   +W++ 
Sbjct: 376 LPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDV 435

Query: 570 RQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYV 629
             +RK M D G  K PG S IE N  +H F A +  H  +  +   L ++  +LKSAGYV
Sbjct: 436 NHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYV 495

Query: 630 PNTVQVVF-DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKL 688
           P+T  V + D+++EEKE ++ YHSEKLA+ FGL+N+    TIR+ KNLR+CGDCH A K 
Sbjct: 496 PDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKF 555

Query: 689 LSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +S I+ R+I++RD  RFH FK G CSC D+W
Sbjct: 556 ISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 124/510 (24%), Positives = 215/510 (42%), Gaps = 94/510 (18%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSR 62
           L L H  L++L+  C +LK+  QI    + +   ++ +  ++ I+F   +  K  +  + 
Sbjct: 24  LPLPH--LISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAH 81

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF QI  PNI ++NT+ RGY+R + P   +                  F   L   +++
Sbjct: 82  QLFDQITQPNIVLFNTMARGYARLNDPLRMIT----------------HFRRCLRLVSKV 125

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            +   G Q+HC  +K G+  ++++   LI+ Y+  G I+ + +VF+      +V+YN +I
Sbjct: 126 KALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAII 185

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
              A+      AL LFR++Q+  ++P   T + + S+C  L    +G+  H  V K    
Sbjct: 186 MSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK---- 241

Query: 243 VGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            G +  +K  T +I+MYAKCG ++ A  VF  M   + T AWS++I  Y   G       
Sbjct: 242 YGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVAYATHGD------ 294

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                   GF QA+ +  +M+   + PDE+T + +L AC   G 
Sbjct: 295 ------------------------GF-QAISMLNEMKKEKVQPDEITFLGILYACSHNGL 329

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G               +I     ++D+  + G +D A     ++P            
Sbjct: 330 VEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELP------------ 377

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
                                   +KP  + + T+L ACS  G VE GK+  E +     
Sbjct: 378 ------------------------IKPTPILWRTLLSACSTHGNVEMGKRVIERIFELD- 412

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
                 Y    +L AR G+ D+   L ++M
Sbjct: 413 DSHGGDYVIFSNLCARYGKWDDVNHLRKTM 442


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 331/557 (59%), Gaps = 19/557 (3%)

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG-KQFH 233
           L+++N  I   A+   PC A   FR   D  + PD ++   +  A T L       K   
Sbjct: 68  LLAHNAFIRALARGPRPCLAFAAFR---DLPLPPDHYSLNFLVRAATALVASAAEEKHVS 124

Query: 234 AVVYKNLGCV-----------GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           A V   L  V            ++  +++ V++MYA  G +  +   F+ +         
Sbjct: 125 AEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCV- 183

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           ++M++     G ++ AR LFD M QRD V+W+AMI+GY  VG   +AL LF +M S G  
Sbjct: 184 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 243

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
             E T+V+VL AC  +G LD GK +H  Y+ +     +I L TA++DMY+KCG++ TA+ 
Sbjct: 244 VGEATLVSVLTACAQIGTLDRGKWVHW-YVRSRGMQMSIKLGTALVDMYSKCGAVVTAME 302

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + +  + V  + S +SGLA +G+G   + +F+ ME  G++P+GV+FV VL  CS  
Sbjct: 303 VFESMAE--RNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMA 360

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           GLV+EG+  F+SM  YG+ P  EHYGCMVDL  R GRLD+A   I  MP + +  +W AL
Sbjct: 361 GLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGAL 420

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L A R+H +  +G+ A  KLL +E ++ A +V LSN+ AE+  W+   +VR +M   G++
Sbjct: 421 LNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVK 480

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PGWS IE +G +H F    + HP+  EIELML +M  +L+  GY  NT +V+FD++EE
Sbjct: 481 KVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEE 540

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           EKE  +S HSEKLALAFGLI       IRI KNLR+C DCH   KL+S+++ REI++RD 
Sbjct: 541 EKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDR 600

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G CSC D+W
Sbjct: 601 NRFHHFKGGECSCRDYW 617



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 179/457 (39%), Gaps = 98/457 (21%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           M+ L+ + ++LL  L     L+    +H  +V SG     S S L +F A     N L  
Sbjct: 2   MRPLLRDPTTLLPSLAEASHLRA---LHAHLVVSG--RLASPSHLAAFLASLASSNHLSY 56

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS-- 118
           +R++  Q     +   N  +R  +R   P  A   +  +     + P++++  F++ +  
Sbjct: 57  ARLVLPQ-RPATLLAHNAFIRALARGPRPCLAFAAFRDL----PLPPDHYSLNFLVRAAT 111

Query: 119 ------------CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI------ 160
                        A +++       H   +++G   D  +++ ++  Y+  G +      
Sbjct: 112 ALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAA 171

Query: 161 -------------------------NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
                                    + A  +F+G   RD V+++ +I GY  V     AL
Sbjct: 172 FAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREAL 231

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK--TAV 253
            LF +M  +       T V++ +AC ++     GK  H  V       G  M +K  TA+
Sbjct: 232 MLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSR----GMQMSIKLGTAL 287

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           ++MY+KCG +  A  VF +M   ++   W+S +SG    G      QLF           
Sbjct: 288 VDMYSKCGAVVTAMEVFESMA-ERNVYTWTSAVSGLAMNGMGTECLQLFK---------- 336

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                                +ME  GI P+ V+ VAVLR C   G +D G+       +
Sbjct: 337 ---------------------RMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK 375

Query: 374 NVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIP 408
              +G + +      ++D+Y + G +D A+S    +P
Sbjct: 376 ---YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMP 409



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 144/318 (45%), Gaps = 12/318 (3%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   +   W+ ++ GY      +EAL+L+  MLS G  +    T   VL +CA
Sbjct: 199 ARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAG-TTVGEATLVSVLTACA 257

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++ +   G  +H ++   G++  + +  AL+  YS  G +  A +VFE    R++ ++ +
Sbjct: 258 QIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTS 317

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
            ++G A        L LF++M+ + IQP+  +FVA+   C+       G+      + ++
Sbjct: 318 AVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGR----ACFDSM 373

Query: 241 GCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
              G +   +    ++++Y + G ++ A    + M M      W ++++       ++  
Sbjct: 374 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 433

Query: 299 RQLFDQM---DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           +   D++   +  +  +   + + Y++   +     + G M++ G+   +V   + +   
Sbjct: 434 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGV--KKVPGWSTIEVD 491

Query: 356 VGLGALDFGKRLHQQYIE 373
             +     G RLH +Y E
Sbjct: 492 GKVHEFYVGGRLHPRYNE 509


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/663 (35%), Positives = 370/663 (55%), Gaps = 47/663 (7%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N   W  ++    +     EA+ L+  M+  G   P+ FT   V+++CA + 
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSG-YEPDRFTLSGVISACANME 285

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFY---SIFGYINNAHKVFEGSLARDLVSYNT 180
               G Q+H   I+ GL  D  +   LI+ Y   S+ G +  A K+F+  L  ++ S+  
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 181 LINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF--HAVVY 237
           +I GY Q       AL LFR M  + + P+ FTF +   AC  L   RIG+Q   HAV  
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV-- 403

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
                                              +G S      +S+IS Y R G+I+ 
Sbjct: 404 ----------------------------------KLGFSSVNCVANSLISMYARSGRIDD 429

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR+ FD + +++L+S+  +I  Y++     +ALELF ++E  G+     T  ++L     
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           +G +  G+++H + I++ +   N  +  A+I MY++CG+I++A  VF  +    + V  +
Sbjct: 490 IGTIGKGEQIHARVIKSGL-KLNQSVCNALISMYSRCGNIESAFQVFEDMED--RNVISW 546

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
            SII+G A+HG    ++ +F +M   G++P+ VT++ VL ACSH GLV EG + F+SM  
Sbjct: 547 TSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYT 606

Query: 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            +G+ P+MEHY C+VD+L R G L EA   I SMPY A++++WR  L ACR+H N ++G+
Sbjct: 607 EHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGK 666

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A + +++ EP   A Y+LLSN+ A   +W+E   +RK M +  + K  G S++E    +
Sbjct: 667 HAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKV 726

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H+F     SHP+  EI   L+++++K+K  GYVPN   V+ DV+EE+KE ++  HSEK+A
Sbjct: 727 HKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIA 786

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGLI++   + IR+ KNLRICGDCH A K +S    REI+VRDA RFH  K G CSC 
Sbjct: 787 VAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCN 846

Query: 717 DFW 719
           ++W
Sbjct: 847 EYW 849



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 201/405 (49%), Gaps = 42/405 (10%)

Query: 10  SLLALLESCKSLKQAL---QIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILF 65
           +L  ++ +C +++  L   Q+H Q +  GL         LI+ +A       +  +R +F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 66  SQIDNPNIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            QI + N+F W  ++ GY  +    +EAL L+  M+   ++ PN+FTF   L +CA L++
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-PNHFTFSSTLKACANLAA 391

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G Q+  H +K G      + N+LI  Y+  G I++A K F+    ++L+SYNT+I+ 
Sbjct: 392 LRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YA+      AL LF +++D  +   AFTF ++ S    +     G+Q HA V K+   + 
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS--GLK 509

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            N  +  A+I+MY++CG +  A +VF  M   ++  +W+S+I+G+ + G   +A +LF +
Sbjct: 510 LNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHK 568

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M +                                G+ P+EVT +AVL AC  +G ++ G
Sbjct: 569 MLEE-------------------------------GVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 365 -KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            K     Y E+ V  R +     ++D+  + GS+  A+     +P
Sbjct: 598 WKHFKSMYTEHGVIPR-MEHYACIVDILGRSGSLSEAIQFINSMP 641



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 186/403 (46%), Gaps = 42/403 (10%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+  T+   L  C R  SF  G  +H  + +  L+ D    N+LI  YS  G    A  +
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 167 FE--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           F   GS +RDL+S++ +++ +A       AL  F  M ++   P+ + F A   AC+   
Sbjct: 124 FRLMGS-SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAE 182

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
              +G      V K  G + S++ +   +I+M+ K                         
Sbjct: 183 FVSVGDSIFGFVIKT-GYLQSDVCVGCGLIDMFVK------------------------- 216

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                   G +  A ++F++M +R+ V+WT MI+   Q G   +A++LF  M   G  PD
Sbjct: 217 ------GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPD 270

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIEN-VVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
             T+  V+ AC  +  L  G++LH Q I + +   R +     +I+MYAKC S+D ++  
Sbjct: 271 RFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV--GCCLINMYAKC-SVDGSMCA 327

Query: 404 FYKIPKNLKTVSLFN--SIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             KI   +   ++F+  ++I+G  Q  G  E ++ +FR M L  + P+  TF + L AC+
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           +   +  G+Q F   +  G          ++ + AR GR+D+A
Sbjct: 388 NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 170/345 (49%), Gaps = 20/345 (5%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-----SQLISFFALSGCK 55
           +  ++  H +  + L++C +L  AL+I  Q+    +    SS     + LIS +A SG  
Sbjct: 369 LTHVIPNHFTFSSTLKACANLA-ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSG-- 425

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             +  +R  F  +   N+  +NT++  Y+++ + +EAL L+  +  +G+   + FTF  +
Sbjct: 426 -RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGM-GASAFTFASL 483

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L+  A + +   G QIH  +IK GL+ +  + NALI  YS  G I +A +VFE    R++
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNV 543

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +S+ ++I G+A+      AL LF KM +  ++P+  T++A+ SAC+ +     G +    
Sbjct: 544 ISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKS 603

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           +Y   G +   M     ++++  + G ++ A +  ++M        W + +      G +
Sbjct: 604 MYTEHGVI-PRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNL 662

Query: 296 E---RARQLFDQMDQRDLVSWT------AMISGYSQVGGFSQALE 331
           E    A ++  + +  D  ++       A IS + +V    +A++
Sbjct: 663 ELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMK 707



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 13/232 (5%)

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A+     M   G HPD  T    L+ C+   + D G  +H++  ++ +   ++ L
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
            + +I +Y+KCG  + A S+F  +  +   +S +++++S  A + +G  ++  F +M   
Sbjct: 105 NS-LISLYSKCGQWEKATSIFRLMGSSRDLIS-WSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLARD-GRLD 501
           G  P+   F     ACS    V  G   F  ++  G        GC ++D+  +  G L 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-----EPD 548
            A+ + + MP + N+V W  ++   RL +    GE A    LD+     EPD
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMIT--RLMQFGYAGE-AIDLFLDMIFSGYEPD 270


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 329/542 (60%), Gaps = 38/542 (7%)

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N++I  Y  + +   +L++F  M    I PD+ TF A+  A  +L D  +GK  H +V +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
            +G +  ++   TA++++Y  C                                  I  A
Sbjct: 118 -MGFI-CDVYTSTALVHLYCTCL--------------------------------SISDA 143

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            QLFD+M +R+ V+W A+I+GY+    F +A++ F  M + G  P E T+V VL AC  L
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHL 203

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GA + GK +H+ +I +     N+F+ TA+IDMYAKCG++     VF +I +  K V  +N
Sbjct: 204 GAFNQGKWIHE-FIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIRE--KNVYTWN 260

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
            +ISG A +G G+ ++  F  M +   KPD VTF+ VLCAC H GLV EG+  F SM   
Sbjct: 261 VLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ 320

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +G++P++EHYGCMVDLL R G L+EA  LIQSM  + + +IWRALL ACR+H N K+GE 
Sbjct: 321 FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEY 380

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             ++L++LEP++G +YVLLSN+ +   RW E  ++R +M+  GI+K PG S IE N  ++
Sbjct: 381 IIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVY 440

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+AS    P+ + I   L ++  KLK  GYV  T   ++D+++EEKE  V YHSEKLAL
Sbjct: 441 EFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLAL 500

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGL+NS    T+RI KNLRIC DCH  FK+LS +Y+R I+VRD  RFH F +G CSC D
Sbjct: 501 AFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRD 560

Query: 718 FW 719
           +W
Sbjct: 561 YW 562



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 9/283 (3%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   N   WN L+ GY+ +    +A+  +  ML+ G   P+  T   VL++C+ L 
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADG-AQPSERTVVVVLSACSHLG 204

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +F  G  IH  I    L  ++F+  ALI  Y+  G +    KVFE    +++ ++N LI+
Sbjct: 205 AFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS 264

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYA   +   AL  F +M     +PD  TF+ +  AC        G+     + +  G +
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFG-L 323

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM-----ISGYTREGKIERA 298
              +     ++++  + GL+  A  +  +M +      W ++     + G T+ G+    
Sbjct: 324 QPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIK 383

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           R +  +++  +  ++  + + YS+   +++  +L G M   GI
Sbjct: 384 RLI--ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGI 424


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 400/717 (55%), Gaps = 48/717 (6%)

Query: 12  LALLESCKSL---KQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           ++++E C++L   K+   I  +I+ S   +  + ++ LIS +   G    L R++ L   
Sbjct: 264 MSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGI---LDRAKGLLEH 320

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   ++  WN ++   +++    EA+ L   M  +G    N  T+  VL +CA L +   
Sbjct: 321 MYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGF-GANKVTYLSVLEACANLEALSQ 379

Query: 128 GCQIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           G +IH  ++  GL + ++ + N++I  Y   G    A  VFE    +D VS+N +IN   
Sbjct: 380 GREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASV 439

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
              +   AL LF  M+   ++ + FT +++  AC  L D ++ +Q HA            
Sbjct: 440 GNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAA--------- 490

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                                   +      STA  +S+++ Y R G +  A++ FD ++
Sbjct: 491 ------------------------AGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLE 526

Query: 307 QRDLVSWTAMISGYSQV--GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           ++ LV+W+ +++ Y+Q   G   +A + F +ME+ GI P EVT V+ L AC  +  L+ G
Sbjct: 527 EKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHG 586

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +H++   +     ++ L   +I+MY KCGS   A  VF ++P+  K +  +NS+I   
Sbjct: 587 RSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPE--KCLISWNSLIVAY 644

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           A +G    +++  +EM L G  PD  T V++L   SH GL+E G + F S + ++G++P 
Sbjct: 645 AHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPS 704

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPY-DANSVIWRALLAACRLHRNAKIGEIAGQKL 542
                C+VDLLAR G LD A  LI + P   A+++ W  LLAAC+ + + + G    +++
Sbjct: 705 SGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERV 764

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            +LEP H   +V+L+N+ A   RW +A ++RK+M+   ++K PG S+IE +G++H F++ 
Sbjct: 765 FELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISG 824

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
           +  HP+ +EI   L+ +T++++ AGYVP+T  VV DV+E +KE ++S HSE+LA+ FGL+
Sbjct: 825 ESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLM 884

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++R  ETIR+ KNLR+C DCH A K++S +  REI+VRD+ RFH FK G CSC DFW
Sbjct: 885 STRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 240/484 (49%), Gaps = 47/484 (9%)

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           ++F  I   N+F W  +M  YS++   +EAL L+T M  +G   P+   F   L++CA  
Sbjct: 13  MVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEG-TRPDKVVFVIALDACAAS 71

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
                G QIH  ++  GL  ++ I N+L++ Y     +  A KVF+G L RD+VS+  ++
Sbjct: 72  GELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAML 131

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             YAQ      AL    +M    ++P+  TFV +   C +L    +G++ H  +  N G 
Sbjct: 132 AVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRII-NEG- 189

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  + +L  A+++MY  CG  +  + VFS MG S S   W++MI+G ++ G+ E      
Sbjct: 190 LEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQS-SVLLWTTMIAGCSQNGQYE------ 242

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                    + L +F KM+  G+  +EVT ++++  C  L A+ 
Sbjct: 243 -------------------------EGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVK 277

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G+ +  + +E+  F  +  L T++I +Y +CG +D A  +   + +  + V  +N++++
Sbjct: 278 EGEMIDARILES-PFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQ--RDVVAWNAMVT 334

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             AQ+G    +I + R M++ G   + VT+++VL AC++   + +G++    +L  G+  
Sbjct: 335 ACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQ 394

Query: 483 QMEHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           +    G  ++ +  + G+ + A  + ++MP   + V W A++       NA +G    Q 
Sbjct: 395 REVAVGNSVITMYGKCGQTEAAMSVFEAMPRK-DDVSWNAVI-------NASVGNSKFQD 446

Query: 542 LLDL 545
            L+L
Sbjct: 447 ALEL 450



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 192/374 (51%), Gaps = 38/374 (10%)

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
            Y     + +A  VF+G  A+++ S+  ++  Y+Q      AL LF +MQ    +PD   
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           FV    AC    +   G+Q H+ V  +   + SN+++  +++NMY KC  +  AE+VF  
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGS--GLTSNIIISNSLVNMYGKCQDVPCAEKVF-- 116

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                         D M  RD+VSWTAM++ Y+Q G +SQALE 
Sbjct: 117 ------------------------------DGMLLRDVVSWTAMLAVYAQNGCWSQALEC 146

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
             +M++ G+ P++VT V ++  C  L  LD G+++H + I N     +  L  A++ MY 
Sbjct: 147 LSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRII-NEGLEPDGILGNALVHMYG 205

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
            CGS D   SVF ++ ++  +V L+ ++I+G +Q+G  E  + VFR+M+L G+K + VT+
Sbjct: 206 SCGSFDDMKSVFSRMGQS--SVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTY 263

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           ++++  C +   V+EG+     +L             ++ L  + G LD A GL++ M Y
Sbjct: 264 MSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHM-Y 322

Query: 513 DANSVIWRALLAAC 526
             + V W A++ AC
Sbjct: 323 QRDVVAWNAMVTAC 336



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 163/654 (24%), Positives = 300/654 (45%), Gaps = 83/654 (12%)

Query: 15  LESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALS---GCKNGLFRSRILFSQ 67
           L++C +   L    QIH  +V SGL  +I  S+ L++ +       C   +F   +L   
Sbjct: 65  LDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL--- 121

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
               ++  W  ++  Y+++    +AL   + M ++G V PN  TF  +++ CA+L     
Sbjct: 122 ---RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEG-VKPNQVTFVTIVDVCAKLRLLDL 177

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G +IH  II  GLE D  + NAL+H Y   G  ++   VF       ++ + T+I G +Q
Sbjct: 178 GRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQ 237

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +    L +FRKM    ++ +  T+++M   C  L+  + G+   A + ++  C  S+ 
Sbjct: 238 NGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFC--SST 295

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           LL T++I++Y +CG+++ A+ +   M   +   AW++M++   + G              
Sbjct: 296 LLATSLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNGD------------- 341

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
               +W              +A+ L  +M+  G   ++VT ++VL AC  L AL  G+ +
Sbjct: 342 ----NW--------------EAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREI 383

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H + +   +  R + +  +VI MY KCG  + A+SVF  +P+  K    +N++I+    +
Sbjct: 384 HARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPR--KDDVSWNAVINASVGN 441

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL--VEEGKQFFESMLNYGIKPQME 485
              + ++ +F  MEL GL+ +  T +++L AC  GGL  ++  +Q        G      
Sbjct: 442 SKFQDALELFHGMELEGLRSNEFTLLSLLEAC--GGLEDLKLARQIHARAAAGGFGGNST 499

Query: 486 HYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
             G  +V++ AR G L +A     S+  +   V W  +LAA   +  +K G         
Sbjct: 500 AVGNSVVNMYARCGSLLDAKKAFDSLE-EKGLVAWSIILAA---YAQSKDG--------- 546

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
             P   A +     M AE  +  E   V      S +      + +EH  ++HR  A+  
Sbjct: 547 --PGRRA-FKFFQEMEAEGIKPGEVTFV------SALDACAAMATLEHGRSMHRRAAASG 597

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALA 658
                 E  L+L +  + +      P+  ++VF  D+  ++ ++S++S  +A A
Sbjct: 598 ----FVETSLVLGNTIINMYGKCGSPSDAKLVF--DQMPEKCLISWNSLIVAYA 645



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 154/296 (52%), Gaps = 7/296 (2%)

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y +  ++  A  +FD +  +++ SWT M++ YSQ G + +ALELF +M+  G  PD+V  
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V  L AC   G LD G+++H   + + +   NI ++ ++++MY KC  +  A  VF  + 
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTS-NIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
             L+ V  + ++++  AQ+G    ++     M+  G+KP+ VTFVT++  C+   L++ G
Sbjct: 121 --LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLG 178

Query: 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           ++    ++N G++P       +V +    G  D+   +   M   ++ ++W  ++A C  
Sbjct: 179 RKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQ 237

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           +   + G +  +K +DLE         +S  + E  R  +A +  +++D   ++ P
Sbjct: 238 NGQYEEGLLVFRK-MDLEGVKANEVTYMS--MVEVCRNLDAVKEGEMIDARILESP 290


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 361/617 (58%), Gaps = 43/617 (6%)

Query: 109 NFTFPFVLNSC-ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGYINNAH 164
           N T+P  L SC  + +S K   QI    IK  L+ DL I   LI+  +       ++ AH
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           ++FE     D+V +N++  GY++   P  A+ LF K  +  + PD +TF ++  AC    
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
             + GKQ H +  K LG +  N  +   +INMYA C                        
Sbjct: 142 AFQQGKQLHCLAIK-LG-LNENPYVCPTLINMYAGCN----------------------- 176

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                     ++ A+++FD++ +  +VS+ A+I+GY++    ++AL LF ++++  + P+
Sbjct: 177 ---------DVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPN 227

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           +VT+++VL +C  LGALD GK +H+ Y++     + + + TA+IDMYAKCGS+D A+SVF
Sbjct: 228 DVTVLSVLSSCALLGALDLGKWIHE-YVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVF 286

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +  +++    ++++I   A HG G+  +++F EM    ++PD +TF+ +L ACSH GL
Sbjct: 287 ESM--SVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGL 344

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+EG ++F SM   YGI P ++HYGCMVDLL R G L EAY  I  +P     ++WR LL
Sbjct: 345 VDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLL 404

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
           ++C  H N ++ +    ++L+L+  HG  YV+LSN+ A   +WE+   +RKLM   G  K
Sbjct: 405 SSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVK 464

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF-DVDEE 642
            PG S IE +  +H F +    H  +  +   L ++  +LKS GYVP+T  VV  D+++E
Sbjct: 465 IPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDE 524

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           EKE  + YHSEKLA++FGL+N+    TIR+ KNLR+CGDCH A KL+S +  REI++RD 
Sbjct: 525 EKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDV 584

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G CSC D+W
Sbjct: 585 QRFHHFKDGKCSCGDYW 601



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 232/472 (49%), Gaps = 38/472 (8%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQ 67
           SSLL+ L  C SLK+  QI    + + L + +   ++LI+    +     +  +  LF  
Sbjct: 27  SSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEA 86

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I  P+I ++N++ RGYSRS++P +A+ L+   L+  ++ P+++TFP +L +C    +F+ 
Sbjct: 87  IPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLL-PDDYTFPSLLKACVVAKAFQQ 145

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+HC  IK GL  + ++   LI+ Y+    ++ A +VF+  L   +VSYN +I GYA+
Sbjct: 146 GKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYAR 205

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  AL LFR++Q   ++P+  T +++ S+C  L    +GK  H  V KN   +   +
Sbjct: 206 SSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN--GLDKYV 263

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + TA+I+MYAKCG ++ A  VF +M + + T AWS+MI  Y   G+ +    +F++M +
Sbjct: 264 KVNTALIDMYAKCGSLDGAISVFESMSV-RDTQAWSAMIVAYAMHGQGQDVMSMFEEMAR 322

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                                            + PDE+T + +L AC   G +D G R 
Sbjct: 323 AK-------------------------------VQPDEITFLGLLYACSHTGLVDEGFRY 351

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
                E       I     ++D+  + G +  A     ++P    T  L+ +++S  + H
Sbjct: 352 FYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIK-PTPILWRTLLSSCSSH 410

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           G  E +  V  ++  +     G  +V +   C+  G  E+     + M++ G
Sbjct: 411 GNLELAKQVMNQILELD-DSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKG 461


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 338/606 (55%), Gaps = 39/606 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L +CA       G  +H   +K  + +     N L+  Y+  G ++ A  VF+    R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +V++ +LI  YA+      A+ LF +M    + PD FT   +  AC        GK  H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            + +N   + SN+ +  A+++MYAKCG M                               
Sbjct: 124 YIREND--MQSNIFVCNALMDMYAKCGSM------------------------------- 150

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            E A  +F +M  +D++SW  MI GYS+    ++AL LFG M  L + PD  T+  +L A
Sbjct: 151 -EDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPA 208

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  L +LD GK +H   + N  F     +  A++DMY KCG    A  +F  IP   K +
Sbjct: 209 CASLASLDRGKEVHGHILRNGFFSDQQ-VANALVDMYVKCGVPVLARLLFDMIPT--KDL 265

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +  +I+G   HG G  +I  F EM   G++PD V+F+++L ACSH GL++EG +FF  
Sbjct: 266 ITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNV 325

Query: 475 MLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M +   +KP++EHY C+VDLLAR G+L  AY  I+SMP + ++ IW ALL+ CR+H + K
Sbjct: 326 MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVK 385

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           + E   + + +LEP++  +YVLL+N  AE  +WEE +++R+ +   G++K PG S+IE  
Sbjct: 386 LAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVK 445

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H FLA   SHPQ K+IE++LK +  K+K  GY P T   + + D  +KET +  HSE
Sbjct: 446 SKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSE 505

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFG++N     TIR++KNLR+CGDCH   K +S+   REI++RD+ RFH FK G C
Sbjct: 506 KLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVC 565

Query: 714 SCMDFW 719
            C  FW
Sbjct: 566 CCRGFW 571



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 192/419 (45%), Gaps = 41/419 (9%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L    +C  +     +HG  V + ++   +  + L+  +A  G  +G     ++F  +
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAI---LVFDLM 59

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
               +  W +L+  Y+R     EA+ L+  M  +G VSP+ FT   VL++CA   S ++G
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREG-VSPDIFTITTVLHACACNGSLENG 118

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H +I +  ++ ++F+ NAL+  Y+  G + +A+ VF     +D++S+NT+I GY++ 
Sbjct: 119 KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKN 178

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  AL LF  M    ++PD  T   +  AC  L     GK+ H  + +N     S+  
Sbjct: 179 SLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRN--GFFSDQQ 235

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  A+++MY KCG+  +A  +F  M  +K    W+ MI+GY   G    A   F++M Q 
Sbjct: 236 VANALVDMYVKCGVPVLARLLFD-MIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQA 294

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          GI PDEV+ +++L AC   G LD G R  
Sbjct: 295 -------------------------------GIEPDEVSFISILYACSHSGLLDEGWRFF 323

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
               +       +     ++D+ A+ G +  A      +P      +++ +++SG   H
Sbjct: 324 NVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIE-PDATIWGALLSGCRIH 381



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 173/361 (47%), Gaps = 46/361 (12%)

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            V++  AC    D  +G+  H    K   CV         +++MYAKCG+++ A  VF  
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVK--ACVHWKTTFCNTLLDMYAKCGVLDGAILVF-- 56

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                         D M  R +V+WT++I+ Y++ G   +A+ L
Sbjct: 57  ------------------------------DLMSVRTVVTWTSLIAAYAREGLSDEAIRL 86

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M+  G+ PD  T+  VL AC   G+L+ GK +H  YI       NIF+  A++DMYA
Sbjct: 87  FHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH-NYIRENDMQSNIFVCNALMDMYA 145

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCGS++ A SVF ++P  +K +  +N++I G +++ L   ++++F +M ++ +KPDG T 
Sbjct: 146 KCGSMEDANSVFLEMP--VKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTL 202

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
             +L AC+    ++ GK+    +L  G     +    +VD+  + G    A  L   +P 
Sbjct: 203 ACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIP- 261

Query: 513 DANSVIWRALLAACRLH--RNAKIGEIAGQKLLDLEPDHGAHYVLL-----SNMLAETYR 565
             + + W  ++A   +H   N  I      +   +EPD  +   +L     S +L E +R
Sbjct: 262 TKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWR 321

Query: 566 W 566
           +
Sbjct: 322 F 322


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 358/622 (57%), Gaps = 40/622 (6%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           +++ G + P    +  +LN C  L   K G  IH HI     E DL + N +++ Y+  G
Sbjct: 95  LINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG 154

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            +  A  +F+    +D+VS+  LI+GY+Q  +   AL LF KM     QP+ FT  ++  
Sbjct: 155 SLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLK 214

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           A         G+Q HA   K     G +M       N++    L++M  R          
Sbjct: 215 ASGTGPSDHHGRQLHAFSLK----YGYDM-------NVHVGSSLLDMYAR---------- 253

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
              W+ M     RE K+     +F+ +  +++VSW A+I+G+++ G     + LF +M  
Sbjct: 254 ---WAHM-----REAKV-----IFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLR 300

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI-FLTTAVIDMYAKCGSI 397
            G  P   T  +VL AC   G+L+ GK +H   I++   G+ I ++   +IDMYAK GSI
Sbjct: 301 QGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSG--GQPIAYIGNTLIDMYAKSGSI 357

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A  VF ++ K  + +  +NSIISG AQHGLG  ++ +F +M    ++P+ +TF++VL 
Sbjct: 358 KDAKKVFRRLVK--QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLT 415

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           ACSH GL++EG+ +FE M  + I+ Q+ H+  +VDLL R GRL+EA   I+ MP    + 
Sbjct: 416 ACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAA 475

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL ACR+H+N  +G  A +++ +L+P     +VLLSN+ A   R  +A +VRK+M 
Sbjct: 476 VWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMK 535

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           +SG++K P  S++E    +H F+A+  SHP  +EI+ M + ++ K+K  GYVP+T  V+F
Sbjct: 536 ESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLF 595

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
            ++++++E  + YHSEKLALAF ++ +    TIRI KN+RICGDCH AFK  S +  REI
Sbjct: 596 FMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREI 655

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD  RFH F  G CSC D+W
Sbjct: 656 IVRDTNRFHHFLHGMCSCRDYW 677



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 214/478 (44%), Gaps = 45/478 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNG-LFRSRILFS 66
           +S +L      + LKQ   IH  I  S     +    L++F      K G L  ++ LF 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLV---LLNFILNMYAKCGSLEEAQDLFD 164

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   ++  W  L+ GYS+S    EAL L+  ML  G   PN FT   +L +     S  
Sbjct: 165 KMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF-QPNEFTLSSLLKASGTGPSDH 223

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H   +K+G + ++ + ++L+  Y+ + ++  A  +F    A+++VS+N LI G+A
Sbjct: 224 HGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  E    + LF +M     +P  FT+ ++  AC        GK  HA V K+ G     
Sbjct: 284 RKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG--QPI 340

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +   +I+MYAK G +  A++VF  + + +   +W+S+ISGY + G    A QLF+QM 
Sbjct: 341 AYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLFEQML 399

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +                                 + P+E+T ++VL AC   G LD G+ 
Sbjct: 400 KAK-------------------------------VQPNEITFLSVLTACSHSGLLDEGQY 428

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             +   ++ +  +     T V+D+  + G ++ A     ++P    T +++ +++     
Sbjct: 429 YFELMKKHKIEAQVAHHVT-VVDLLGRAGRLNEANKFIEEMPIK-PTAAVWGALLGACRM 486

Query: 427 HGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           H      + V+   ++  L P D    V +    +  G + +  +  + M   G+K +
Sbjct: 487 H--KNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKE 542


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/657 (36%), Positives = 362/657 (55%), Gaps = 58/657 (8%)

Query: 106 SPNNFTFPF--VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           SP    F    VL++   + + ++   +H  II   L  +  +   L+  Y+    + +A
Sbjct: 37  SPQETVFLLGQVLDTYPDIRTLRT---VHSRIILEDLRCNSSLGVKLMRAYASLKDVASA 93

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            KVF+    R+++  N +I  Y         + +F  M    ++PD +TF  +  AC+  
Sbjct: 94  RKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
               IG++ H    K +G + S + +   +++MY KCG ++ A  V   M   +   +W+
Sbjct: 154 GTIVIGRKIHGSATK-VG-LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWN 210

Query: 284 SMISGYTREGKIERA-------------------------------------RQLFDQMD 306
           S++ GY +  + + A                                     + +F +M 
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 270

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++ LVSW  MI  Y +     +A+EL+ +ME+ G  PD V++ +VL AC    AL  GK+
Sbjct: 271 KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT--VSLFNSIISGL 424
           +H  YIE      N+ L  A+IDMYAKCG ++ A  VF    +N+K+  V  + ++IS  
Sbjct: 331 IHG-YIERKKLIPNLLLENALIDMYAKCGCLEKARDVF----ENMKSRDVVSWTAMISAY 385

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
              G G  ++A+F +++  GL PD + FVT L ACSH GL+EEG+  F+ M + Y I P+
Sbjct: 386 GFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 445

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EH  CMVDLL R G++ EAY  IQ M  + N  +W ALL ACR+H +  IG +A  KL 
Sbjct: 446 LEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLF 505

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            L P+   +YVLLSN+ A+  RWEE   +R +M   G++K PG S +E N  +H FL   
Sbjct: 506 QLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGD 565

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           +SHPQ+ EI   L  +  K+K  GYVP++   + DV+EE+KET ++ HSEKLA+ F L+N
Sbjct: 566 RSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMN 625

Query: 664 SRSKE-----TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           ++ +E     TIRITKNLRICGDCH+A KL+S+I  REI++RD  RFH+F+ G CSC
Sbjct: 626 TKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 188/422 (44%), Gaps = 39/422 (9%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           +L++   ++    +H +I+   L    +SS  +           +  +R +F +I   N+
Sbjct: 48  VLDTYPDIRTLRTVHSRIILEDL--RCNSSLGVKLMRAYASLKDVASARKVFDEIPERNV 105

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            I N ++R Y  +    E + ++ +M     V P+++TFP VL +C+   +   G +IH 
Sbjct: 106 IIINVMIRSYVNNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVIGRKIHG 164

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
              K GL   LF+ N L+  Y   G+++ A  V +    RD+VS+N+L+ GYAQ +    
Sbjct: 165 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP----------RIGKQFHAVVYKNLGCV 243
           AL + R+M+   I  DA T  ++  A +               ++GK+        +G  
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 284

Query: 244 GSNMLLKTAVINMYAKC---GLMNMAERVFSTMGMSKSTAAWS----------------- 283
             N +   AV  +Y++    G    A  + S +     T+A S                 
Sbjct: 285 MKNAMPVEAV-ELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN 343

Query: 284 -----SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
                ++I  Y + G +E+AR +F+ M  RD+VSWTAMIS Y   G    A+ LF K++ 
Sbjct: 344 LLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQD 403

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+ PD +  V  L AC   G L+ G+   +   ++      +     ++D+  + G + 
Sbjct: 404 SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 463

Query: 399 TA 400
            A
Sbjct: 464 EA 465



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 138/289 (47%), Gaps = 10/289 (3%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFR 60
           +R V+  +SL+      +    AL++  ++    ++H   + + L+   + +  +N ++ 
Sbjct: 203 RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYV 262

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
             + F ++   ++  WN ++  Y ++  P EA+ LY+ M + G   P+  +   VL +C 
Sbjct: 263 KDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF-EPDAVSITSVLPACG 320

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
             S+   G +IH +I +  L  +L + NALI  Y+  G +  A  VFE   +RD+VS+  
Sbjct: 321 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTA 380

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVY 237
           +I+ Y      C A+ LF K+QDS + PD+  FV   +AC+    L + R   +     Y
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY 440

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           K    +   +     ++++  + G +  A R    M M  +   W +++
Sbjct: 441 K----ITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL 485


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 342/575 (59%), Gaps = 28/575 (4%)

Query: 41  SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
           +SS+LI+F ALS  +   +  +IL   I+NPN F WN  +RG+S S++P++A++ Y  ML
Sbjct: 12  ASSRLIAFCALSESRYLNYCVKIL-KGIENPNAFSWNVTIRGFSESENPKDAVLAYKQML 70

Query: 101 SKGIVS--PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
            +G     P++FT+P +   CA L     G  I  H+ K  LE    + NA IH ++  G
Sbjct: 71  RRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCG 130

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            + NA KVF+ S  RDLVS+N LINGY ++ E   A+ +++ M+   ++PD  T + + S
Sbjct: 131 EMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVS 190

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +C  L D   GK+F+  V  N   +   + L  A+++M++KCG ++ A R+F  +   K 
Sbjct: 191 SCAMLGDLNRGKEFYEYVKAN--GLRMTIPLANALMDMFSKCGDIHEARRIFDNL--EKR 246

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
           T                    +LFD M+++D+V W AMI G  Q      AL LF +M++
Sbjct: 247 TIV-----------------SKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQT 289

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
               PDE+TM+  L AC  LGALD G  +H+ YIE      N+ L T+++DMYAKCG+I 
Sbjct: 290 SNTDPDEITMIHCLSACSQLGALDVGIWIHR-YIEKHSLSLNVALGTSLVDMYAKCGNIS 348

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            AL VF+ I    +    + +II GLA HG   T+I+ F EM   G+ PD +TF+ +L A
Sbjct: 349 EALCVFHGI--QTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSA 406

Query: 459 CSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           C HGG+++ G+ +F  M + + + PQ++HY  MVDLL R G L+EA  L++SMP +A++ 
Sbjct: 407 CCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAA 466

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL  CR+H N K+GE A +KLL+L+P     YVLL  M  E   WE+A++ R++M+
Sbjct: 467 VWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMN 526

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           + G++K PG S IE NG +  F+   KS P++++I
Sbjct: 527 ERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKI 561


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 356/579 (61%), Gaps = 11/579 (1%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           + +  SL    ++H Q+V + ++   SS S++I  +ALS     L ++  +F+QI  P +
Sbjct: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALS--PQSLPKAHFVFNQIQRPTL 78

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            +WN ++ G S+SD P +A+  Y +M  KGI   ++ TF F+  SCAR+S  + G  +  
Sbjct: 79  LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGI-QGSHLTFIFLFKSCARVSDVRQGQMVRV 137

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
           H +K G E  LF+ NALIH Y  FG +  A KVF+G L RD+VS+N++I GY Q      
Sbjct: 138 HSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKK 197

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
            L LFR+MQ   ++ D+ T +   SA   L++  +G   + V Y +   V  ++ L   +
Sbjct: 198 VLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGD--YLVKYIDEHGVVVDLYLGNTL 255

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+MY + G+++ A RVF  M   K+  +W++MI GY + G +  A++LF++M  RD++SW
Sbjct: 256 IDMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISW 314

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           T+MI GYS     ++A++LF +M    + PDE+T+   L AC  LG+LD G+ +H  YI 
Sbjct: 315 TSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD-YIR 373

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
                 ++F+  ++IDMY KCG ++ AL VF  + K   +VS + SIISGLA +G  E++
Sbjct: 374 KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM-KTRDSVS-WTSIISGLAVNGFAESA 431

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVD 492
           + VF +M   G+ P   TFV VL AC+H GLV++G + F+SM N Y + P+M+HYGC+VD
Sbjct: 432 LNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVD 491

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R G LD AY  I+ MP   + VIWR LL+AC+LH N  + EI  +KLL L+P +  +
Sbjct: 492 LLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGN 551

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
           YVL S+  A + RW++  ++RKLM+ + +QKP  +S IE
Sbjct: 552 YVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIE 590


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/716 (34%), Positives = 394/716 (55%), Gaps = 48/716 (6%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHS-GLNHH-ISSSQLISFFALSGCKNGLFRSRILF 65
           ++++L    S K+L++   IH +I  + GL    I  + L++ +A  G    L  ++ LF
Sbjct: 124 YTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCG---SLEDAKRLF 180

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   ++  WN ++  Y++S   +EA+ LY  M     V P+  TF  VL++C+ L   
Sbjct: 181 ERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM----DVEPSVRTFTSVLSACSNLGLL 236

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH  I   G E DL ++NAL+  Y+    +++A K+F+    RD+VS++ +I  +
Sbjct: 237 DQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAF 296

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+      A+  + KMQ   ++P+ +TF ++  AC  + D R G+  H  +  N      
Sbjct: 297 AETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGN------ 350

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                                       G   +    ++++  YT  G ++ AR LFDQ+
Sbjct: 351 ----------------------------GYKITLVNGTALVDLYTSYGSLDEARSLFDQI 382

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLRACVGLGALDFG 364
           + RD   WT +I GYS+ G  +  LEL+ +M++    P  ++    V+ AC  LGA    
Sbjct: 383 ENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADA 442

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           ++ H   IE      +  L T++++MY++ G++++A  VF K+    +    + ++I+G 
Sbjct: 443 RQAHSD-IEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSS--RDTLAWTTLIAGY 499

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
           A+HG    ++ +++EMEL G +P  +TF+ VL ACSH GL E+GKQ F S+  +Y + P 
Sbjct: 500 AKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPN 559

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           + HY C++DLL+R GRL +A  LI +MP + N V W +LL A R+H++ K    A  ++ 
Sbjct: 560 IAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQIT 619

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            L+P   A YVLLSN+ A T        VR  M   G++K  G S+IE    +H F    
Sbjct: 620 KLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGD 679

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SHP+ +EI   L+ ++ K+K AGYVP + +V+ DV E+EKE ++  HSEKLA+AFGLI 
Sbjct: 680 NSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIA 739

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +    T+RI   LRIC DCH A K +S I RREI+VRD+ RFH F+ G CSC D+W
Sbjct: 740 TAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 240/519 (46%), Gaps = 54/519 (10%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           L  C+ L+   QIH +I  +   +    ++++  +   G    +  +R  F  I   N +
Sbjct: 34  LRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCG---SVASARAAFDAIARKNDY 90

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            W +++  Y+++   + AL LY  M     + PN   +  VL +CA + + + G  IH  
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIKALEEGKAIHSR 146

Query: 135 IIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
           I    GL+ D+ + N+L+  Y+  G + +A ++FE    R + S+N +I  YAQ      
Sbjct: 147 ISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEE 206

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           A+ L+  M    ++P   TF ++ SAC+ L     G++ HA++         ++ L+ A+
Sbjct: 207 AIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR--GTELDLSLQNAL 261

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           + MYA+C  ++ A ++F  +   +   +WS+MI+ +                 + DL   
Sbjct: 262 LTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAAFA----------------ETDL--- 301

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                       F +A+E + KM+  G+ P+  T  +VL AC  +G L  G+ +H Q + 
Sbjct: 302 ------------FDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 349

Query: 374 NVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           N   G  I L   TA++D+Y   GS+D A S+F +I    +   L+  +I G ++ G   
Sbjct: 350 N---GYKITLVNGTALVDLYTSYGSLDEARSLFDQIEN--RDEGLWTVLIGGYSKQGHRT 404

Query: 432 TSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490
             + ++REM+     P   + +  V+ AC+  G   + +Q    +   G+         +
Sbjct: 405 GVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSL 464

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           V++ +R G L+ A  +   M    +++ W  L+A    H
Sbjct: 465 VNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGYAKH 502


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/530 (41%), Positives = 337/530 (63%), Gaps = 12/530 (2%)

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           ++ +M++  + PD  TF  +  +        +G++ HA +   L  +  +  ++T+++NM
Sbjct: 49  VYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQIL--LFGLDKDPFVRTSLLNM 106

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           Y+ CG +  A+RVF   G SK   AW+S+++ Y + G I+ AR+LFD+M +R+++SW+ +
Sbjct: 107 YSSCGDLRSAQRVFDDSG-SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165

Query: 317 ISGYSQVGGFSQALELFGKME-----SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           I+GY   G + +AL+LF +M+        + P+E TM  VL AC  LGAL+ GK +H  Y
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHA-Y 224

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+      +I L TA+IDMYAKCGS++ A  VF  +    K V  ++++I  LA +GL +
Sbjct: 225 IDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK-KDVKAYSAMICCLAMYGLTD 283

Query: 432 TSIAVFREMELM-GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
               +F EM     + P+ VTFV +L AC H GL+ EGK +F+ M+  +GI P ++HYGC
Sbjct: 284 ECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGC 343

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDL  R G + EA   I SMP + + +IW +LL+  R+  + K  E A ++L++L+P +
Sbjct: 344 MVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMN 403

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YVLLSN+ A+T RW E + +R  M+  GI K PG SY+E  G +H F+   +S  ++
Sbjct: 404 SGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQES 463

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           + I  ML ++  +L+ AGYV +T +V+ D++E++KE  +SYHSEKLA+AF L+ +R    
Sbjct: 464 ERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTP 523

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +RI KNLRICGDCHL  K++S+++ REI+VRD  RFH F+ G+CSC DFW
Sbjct: 524 VRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 180/389 (46%), Gaps = 73/389 (18%)

Query: 74  FIWNTLMRGYSRS-DSPQE--ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           F+WN ++R    +  SPQ    + +Y  M +   VSP+  TFPF+L S         G +
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHR-VSPDFHTFPFLLPSFHNPLHLPLGQR 83

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ--- 187
            H  I+ FGL+ D F+R +L++ YS  G + +A +VF+ S ++DL ++N+++N YA+   
Sbjct: 84  THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143

Query: 188 ----------------VKEPC------------PALWLFRKMQ-----DSCIQPDAFTFV 214
                           +   C             AL LFR+MQ     ++ ++P+ FT  
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
            + SAC  L     GK  HA + K    V  +++L TA+I+MYAKCG +  A+RVF+ +G
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYH--VEIDIVLGTALIDMYAKCGSLERAKRVFNALG 261

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             K   A+S+MI      G  +   QLF +M   D                         
Sbjct: 262 SKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD------------------------- 296

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
                 I+P+ VT V +L ACV  G ++ GK   +  IE      +I     ++D+Y + 
Sbjct: 297 -----NINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRS 351

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G I  A S    +P     V ++ S++SG
Sbjct: 352 GLIKEAESFIASMPME-PDVLIWGSLLSG 379



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 16/343 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +SLL +  SC  L+ A ++      SG     + + +++ +A +G  +    +R LF ++
Sbjct: 101 TSLLNMYSSCGDLRSAQRVFDD---SGSKDLPAWNSVVNAYAKAGLIDD---ARKLFDEM 154

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSM----LSKGIVSPNNFTFPFVLNSCARLSS 124
              N+  W+ L+ GY      +EAL L+  M     ++  V PN FT   VL++C RL +
Sbjct: 155 PERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGA 214

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLIN 183
            + G  +H +I K+ +E D+ +  ALI  Y+  G +  A +VF      +D+ +Y+ +I 
Sbjct: 215 LEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMIC 274

Query: 184 GYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             A          LF +M  S  I P++ TFV +  AC        GK +  ++ +  G 
Sbjct: 275 CLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG- 333

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERAR 299
           +  ++     ++++Y + GL+  AE   ++M M      W S++SG    G I   E A 
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +   ++D  +  ++  + + Y++ G + +   +  +ME  GI+
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGIN 436


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/608 (38%), Positives = 351/608 (57%), Gaps = 60/608 (9%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +L  C+ +   +   QIH  ++K GL  D    + L+ F +    G +  A  VF+    
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            +   +NT+I GY+  KEP  AL L+  M    +  +A+TF  +  AC+ ++     +Q 
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + K                        M     +++T          +S+++ Y++ 
Sbjct: 141 HAHIIK------------------------MGFGSEIYTT----------NSLLNVYSKS 166

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G I+ AR LFDQ+DQRD                 ++AL LF +M++ GI  D V +V+ L
Sbjct: 167 GDIKSARLLFDQVDQRD-----------------TEALNLFHRMQTAGIKLDNVALVSTL 209

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC  LG LD GK +H  YI+      +  L   +IDMYAKCG ++ A+ VF K+ +  K
Sbjct: 210 QACADLGVLDQGKWIHA-YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEE--K 266

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            VS++ ++ISG A HG G  ++  F +M+  G++P+ +TF  +L ACSH GLV E K  F
Sbjct: 267 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 326

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           ESM   +G KP +EHYGCMVDLL R G L EA  LI++MP   N+ IW ALL AC +H N
Sbjct: 327 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 386

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++G+  G+ L+ ++P HG  Y+ L+++ A    W +A +VR+ M + G+ K PG S I 
Sbjct: 387 LELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVIS 446

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            NGT H FLA  +SHPQ KEI+ ML+ +  +L+  GY P    ++ D++++EKET + +H
Sbjct: 447 VNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHH 506

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+ FGLI+++   TIRI KNLR+C DCH   KL+S++Y REI++RD  RFHLFK G
Sbjct: 507 SEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDG 566

Query: 712 NCSCMDFW 719
           NC+C D+W
Sbjct: 567 NCTCGDYW 574



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 206/425 (48%), Gaps = 69/425 (16%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L LL+ C ++++  QIHGQ++ +GL    I +S+L++F A S     L  +R +F +I  
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA-SPNSGSLAYARTVFDRIFR 80

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN F+WNT++RGYS S  P+EAL+LY  ML    V  N +TFPF+L +C+ +S+ +   Q
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHS-VPHNAYTFPFLLKACSSMSALEETQQ 139

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH HIIK G   +++  N+L++ YS  G I +A  +F+    RD  + N           
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALN----------- 188

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN-------LGCV 243
                 LF +MQ + I+ D    V+   AC +L     GK  HA + K+       LGCV
Sbjct: 189 ------LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCV 242

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                    +I+MYAKCG +  A  VF  M   K  + W++MISGY   G   R R    
Sbjct: 243 ---------LIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHG---RGR---- 285

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                                   +ALE F KM++ G+ P+++T   +L AC   G +  
Sbjct: 286 ------------------------EALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHE 321

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            K L +       F  +I     ++D+  + G +  A  +   +P      +++ ++++ 
Sbjct: 322 AKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK-PNAAIWGALLNA 380

Query: 424 LAQHG 428
              HG
Sbjct: 381 CHIHG 385


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 328/542 (60%), Gaps = 38/542 (7%)

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N++I  Y  + +   +L++F  M    I PD+ TF A+  A  +L D  +GK  H +V +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
            +G +  ++   TA++++Y  C                                  I  A
Sbjct: 118 -MGFI-CDVYTSTALVHLYCTCL--------------------------------SISDA 143

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            QLFD+M +R+ V+W A+I+GY+    F +A++ F  M + G  P E T+V VL AC  L
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHL 203

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           GA + GK +H+ +I +     N+F+ TA+IDMYAKCG++     VF +I +  K V  +N
Sbjct: 204 GAFNQGKWIHE-FIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIRE--KNVYTWN 260

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
            +ISG A +G G+ ++  F  M +   KPD VTF+ VLCAC H GLV EG+  F SM   
Sbjct: 261 VLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ 320

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +G++P++EHYGCMVDLL R G L+EA  LIQSM  + + +IWRALL ACR+H N K+GE 
Sbjct: 321 FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEY 380

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             ++L++LEP++G +YVLLSN+ +   RW E  ++R +M   GI+K PG S IE N  ++
Sbjct: 381 IIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVY 440

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+AS    P+ + I   L ++  KLK  GYV  T   ++D+++EEKE  V YHSEKLAL
Sbjct: 441 EFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLAL 500

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AFGL+NS    T+RI KNLRIC DCH  FK+LS +Y+R I+VRD  RFH F +G CSC D
Sbjct: 501 AFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRD 560

Query: 718 FW 719
           +W
Sbjct: 561 YW 562



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 9/283 (3%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   N   WN L+ GY+ +    +A+  +  ML+ G   P+  T   VL++C+ L 
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADG-AQPSERTVVVVLSACSHLG 204

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +F  G  IH  I    L  ++F+  ALI  Y+  G +    KVFE    +++ ++N LI+
Sbjct: 205 AFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS 264

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYA   +   AL  F +M     +PD  TF+ +  AC        G+     + +  G +
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFG-L 323

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM-----ISGYTREGKIERA 298
              +     ++++  + GL+  A  +  +M +      W ++     + G T+ G+    
Sbjct: 324 QPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIK 383

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           R +  +++  +  ++  + + YS+   +++  +L G M   GI
Sbjct: 384 RLI--ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGI 424


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/704 (34%), Positives = 392/704 (55%), Gaps = 51/704 (7%)

Query: 46  ISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
           I+  A +G   G   +R  F  +       +N L+ GY R+  P  AL L+  M S+ + 
Sbjct: 24  IAHLARAGNIEG---ARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 106 SPNNFTFPFVL------NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI-------- 151
           S N       L      ++ A L+S          ++ F      ++R+ L+        
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIP----FPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 152 ------HF-YSIF-------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                 H  Y++        G +N A ++F+    RD+V++  +++GY Q      A  L
Sbjct: 137 QMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARAL 196

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +M     + +  ++ AM S   +  +  + ++   V+ +       N +  TA++  Y
Sbjct: 197 FDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER------NEVSWTAMLVGY 246

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            + G +  A  +F+ M      AA ++M+ G+ + G ++ A+ +F++M +RD  +W+AMI
Sbjct: 247 IQAGHVEDAAELFNAMP-EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMI 305

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
             Y Q     +AL  F +M   G+ P+  +++++L  C  L  LD+G+ +H   +    F
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSF 364

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++F  +A+I MY KCG++D A  VF+      K + ++NS+I+G AQHGLGE ++ +F
Sbjct: 365 DMDVFAVSALITMYIKCGNLDKAKRVFHTFEP--KDIVMWNSMITGYAQHGLGEQALGIF 422

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
            +M L G+ PDG+T++  L ACS+ G V+EG++ F SM +N  I+P  EHY CMVDLL R
Sbjct: 423 HDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR 482

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G ++EA+ LI++MP + ++VIW AL+ ACR+HRNA+I E A +KLL+LEP +   YVLL
Sbjct: 483 SGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLL 542

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK-SHPQTKEIELM 615
           S++     RWE+A ++RK +    + K PG S+IE++  +H F +    +HP+   I  +
Sbjct: 543 SHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRI 602

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+ +   L  +GY  +   V+ D+DEE+K   + YHSE+ A+A+GL+       IR+ KN
Sbjct: 603 LEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKN 662

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+CGDCH A KL+++I  REI++RDA RFH FK G CSC D+W
Sbjct: 663 LRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 211/478 (44%), Gaps = 61/478 (12%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           NA I   +  G I  A   FE    R   SYN L+ GY + + P  AL LFR+M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 208 PDAFTFVAMFSACTELND--PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
            D  ++ A+ S  +      P       ++ +        +++  T+++  Y + GL+  
Sbjct: 78  -DLASYNALISGLSLRRQTLPDAAAALASIPFP------PSVVSFTSLLRGYVRHGLLAD 130

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A R+F  M   ++  +++ ++ G    G++  AR+LFD+M  RD+V+WTAM+SGY Q G 
Sbjct: 131 AIRLFQQMP-ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGR 189

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
            ++A  LF +M    +    V+  A++      G ++  ++L +   E     RN    T
Sbjct: 190 ITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPE-----RNEVSWT 240

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET------------- 432
           A++  Y + G ++ A  +F  +P++   V+  N+++ G  Q G+ +              
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEH--PVAACNAMMVGFGQRGMVDAAKTVFEKMCERDD 298

Query: 433 ------------------SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
                             +++ FREM   G++P+  + +++L  C+   +++ G++   +
Sbjct: 299 GTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAA 358

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLH--RN 531
           ML       +     ++ +  + G LD+A  +  +  P D   V+W +++     H    
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDI--VMWNSMITGYAQHGLGE 416

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
             +G     +L  + PD G  Y+      + T + +E R++   M  +   +P    Y
Sbjct: 417 QALGIFHDMRLAGMSPD-GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY 473



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 176/433 (40%), Gaps = 64/433 (14%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           +H+S + L+     +G  N    +R LF ++ + ++  W  ++ GY ++    EA  L+ 
Sbjct: 142 NHVSYTVLLGGLLDAGRVN---EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSS---------------------FKSG-CQIHCHI 135
            M  + +VS       +  N    L+                       ++G  +    +
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAEL 258

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
                E  +   NA++  +   G ++ A  VFE    RD  +++ +I  Y Q +    AL
Sbjct: 259 FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVI 254
             FR+M    ++P+  + +++ + C  L     G++ HA +   L C    ++   +A+I
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM---LRCSFDMDVFAVSALI 375

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
            MY KCG ++ A+RVF T    K    W+SMI+GY + G  E                  
Sbjct: 376 TMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMITGYAQHGLGE------------------ 416

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                        QAL +F  M   G+ PD +T +  L AC   G +  G+ +      N
Sbjct: 417 -------------QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                     + ++D+  + G ++ A  +   +P     V ++ +++     H   E  I
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAV-IWGALMGACRMHRNAE--I 520

Query: 435 AVFREMELMGLKP 447
           A F   +L+ L+P
Sbjct: 521 AEFAAKKLLELEP 533


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 355/590 (60%), Gaps = 8/590 (1%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH  +I+ G   D F+   L+   S    I+ A ++F+ +   ++  Y  LI+G+     
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              A+ L+ +M    I PD +   ++  AC      R G++ H+   K LG   SN L++
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALK-LG-FSSNRLVR 185

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             ++ +Y KCG +  A RVF  M   +   A + MIS Y+ +G +E A  +F ++ ++D 
Sbjct: 186 LRIMELYGKCGELGDARRVFEEM--PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDT 243

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V WTAMI G+ +    ++ALE F  M+   + P+E T+V VL AC  LGAL+ G+ +H  
Sbjct: 244 VCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS- 302

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y+       N+F+  A+I+MY++CGSID A +VF ++    + V  +N++ISGL+ +G  
Sbjct: 303 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD--RDVITYNTMISGLSMNGKS 360

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC 489
             +I +FR M    L+P  VTFV VL ACSHGGLV+ G + F SM  +Y ++PQ+EHYGC
Sbjct: 361 RQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGC 420

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R GRL+EAY LI++M    + ++   LL+AC++H+N ++GE   ++L D     
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD 480

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YVLLS++ A + +W+EA QVR  M ++G+QK PG S IE N  +H FL     HPQ 
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQK 540

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           + I   L+++   L+  GY P    V+ D+++ EKE  ++ HSE+LA+ +GLI++     
Sbjct: 541 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTM 600

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IR+ KNLR+C DCH A KL+++I RR+I+VRD  RFH F+ G CSC D+W
Sbjct: 601 IRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 225/514 (43%), Gaps = 81/514 (15%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL---FRSR 62
           L+   +++LL+  + + Q L IH Q++ +G     S    + F  L  C       + SR
Sbjct: 47  LDQKQIISLLQRSRHINQVLPIHAQLIRNGH----SQDPFMVFELLRSCSKCHAIDYASR 102

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           I F    NPN++++  L+ G+  S +  EA+ LY+ ML + I+ P+N+    +L +C   
Sbjct: 103 I-FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESIL-PDNYLMASILKACGSQ 160

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE-------------- 168
            + + G ++H   +K G   +  +R  ++  Y   G + +A +VFE              
Sbjct: 161 LALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMIS 220

Query: 169 -----------GSL-----ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
                      G++      +D V +  +I+G+ + +E   AL  FR MQ   ++P+ FT
Sbjct: 221 SYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFT 280

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            V + SAC++L    IG+  H+ + K    +  N+ +  A+INMY++CG ++ A+ VF  
Sbjct: 281 IVCVLSACSQLGALEIGRWVHSYMRKFE--IELNLFVGNALINMYSRCGSIDEAQTVFDE 338

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M   +    +++MISG +  GK                                 QA+EL
Sbjct: 339 MK-DRDVITYNTMISGLSMNGKSR-------------------------------QAIEL 366

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F  M    + P  VT V VL AC   G +DFG  +      +      I     ++D+  
Sbjct: 367 FRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLG 426

Query: 393 KCGSIDTALSVFYKIPKNLKTVS---LFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           + G ++ A    Y + + +K      +  +++S    H   E    V +E+E  G + D 
Sbjct: 427 RVGRLEEA----YDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG-QADS 481

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            T+V +    +  G  +E  Q    M   G++ +
Sbjct: 482 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 515


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/545 (40%), Positives = 328/545 (60%), Gaps = 37/545 (6%)

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           VS+  LI  Y        A+ + R+   S ++PD+FT V + +AC  + D   G+   A 
Sbjct: 7   VSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVWAA 66

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
             +  G V  ++ + TA +++Y KCG M                                
Sbjct: 67  ARQEEG-VAESVFVATAALDLYVKCGEM-------------------------------- 93

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           E+AR +FD+M  RD V+W AM+ GY+  G   +AL+LF  M+  G  PD  T+V  L AC
Sbjct: 94  EKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSAC 153

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LGALD G++       + V G N  L TA+IDMYAKCGS   A  VF ++ +  + + 
Sbjct: 154 TRLGALDLGRQAVGMVHWDEVLG-NPVLGTALIDMYAKCGSTSEAWMVFQQMLE--RDII 210

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
           ++N++I GL   G  + + A+  +M+  G+K +  TF+ +LC+C+H GLV +G+Q+F +M
Sbjct: 211 VWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNM 270

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
            + Y I P++EHYGCMVDL +R G L+EA+ LI  MP  AN+V+W ALL  C++HRNA +
Sbjct: 271 THVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADL 330

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            E A ++L+ LEP +  +YV+LSN+ + + RWE+A ++R  M   GI+K P  S++E +G
Sbjct: 331 AEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDG 390

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H+F     SHP + +I   L ++ M++K+ GY P T  V+FDV+ EEKE  + +HSEK
Sbjct: 391 KVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEK 450

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           +A+AF LI +   ETIR+TKNLR+C DCH A KL+S I  REI+VRD  RFH F+ G+CS
Sbjct: 451 IAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCS 510

Query: 715 CMDFW 719
           C D+W
Sbjct: 511 CNDYW 515



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 45/369 (12%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +P+   W  L+  Y  +    EA+ +     + G+  P++FT   VL +CAR++  ++G 
Sbjct: 3   HPSTVSWTALIAAYMDAGHALEAIGVARRAFASGM-RPDSFTAVRVLTACARVADLETGE 61

Query: 130 QIHCHIIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +     +  G+   +F+  A +  Y   G +  A  VF+    RD V++  ++ GYA  
Sbjct: 62  AVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASN 121

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  AL LF  MQ    +PD +T V   SACT L    +G+Q   +V+ +   V  N +
Sbjct: 122 GHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDE--VLGNPV 179

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L TA+I+MYAKCG                ++ AW                  +F QM +R
Sbjct: 180 LGTALIDMYAKCG---------------STSEAW-----------------MVFQQMLER 207

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D++ W AMI G    G    A  L G+M+  G+  ++ T + +L +C   G ++ G++  
Sbjct: 208 DIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYF 267

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG----- 423
                       I     ++D++++ G ++ A  +   +P  L    ++ +++ G     
Sbjct: 268 HNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPM-LANAVVWGALLGGCKIHR 326

Query: 424 ---LAQHGL 429
              LA+H L
Sbjct: 327 NADLAEHAL 335



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 5/232 (2%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M     VSWTA+I+ Y   G   +A+ +  +  + G+ PD  T V VL AC  +  L+ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +     +      ++F+ TA +D+Y KCG ++ A SVF ++ KN   V+ + +++ G 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEM-KNRDAVA-WGAMVGGY 118

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A +G    ++ +F  M++ G KPD  T V  L AC+  G ++ G+Q    M+++      
Sbjct: 119 ASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAV-GMVHWDEVLGN 177

Query: 485 EHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
              G  ++D+ A+ G   EA+ + Q M  + + ++W A++    +  + KI 
Sbjct: 178 PVLGTALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMILGLGMTGHEKIA 228



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 15/290 (5%)

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++R +F ++ N +   W  ++ GY+ +  P+EAL L+ +M  +G   P+ +T    L++C
Sbjct: 95  KARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEG-AKPDCYTVVGALSAC 153

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            RL +   G Q    +    +  +  +  ALI  Y+  G  + A  VF+  L RD++ +N
Sbjct: 154 TRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWN 213

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAV--V 236
            +I G         A  L  +M+ S ++ +  TF+ +  +CT       G+Q FH +  V
Sbjct: 214 AMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHV 273

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
           Y+    +   +     +++++++ GL+  A ++   M M  +   W +++ G       +
Sbjct: 274 YR----ISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNAD 329

Query: 297 RARQLFDQMDQRDLVSWTA----MISG-YSQVGGFSQALELFGKMESLGI 341
            A     Q+ +  L  W +    M+S  YS  G +  A +L  +M++ GI
Sbjct: 330 LAEHALKQLIR--LEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGI 377


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/590 (39%), Positives = 356/590 (60%), Gaps = 8/590 (1%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH  +I+ G   D F+   L+   S    I+ A ++F+ +   ++  Y  LI+G+     
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              A+ L+ +M    I PD +   ++  AC      R G++ H+   K LG + SN L++
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALK-LG-LSSNRLVR 185

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
             ++ +Y KCG +  A RVF  M   +   A + MIS Y+ +G +E A  +F ++ ++D 
Sbjct: 186 LRIMELYGKCGELGDARRVFEEM--PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDT 243

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V WTAMI G+ +    ++ALE F  M+   + P+E T+V VL AC  LGAL+ G+ +H  
Sbjct: 244 VCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS- 302

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y+       N+F+  A+I+MY++CGSID A +VF ++    + V  +N++ISGL+ +G  
Sbjct: 303 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD--RDVITYNTMISGLSMNGKS 360

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC 489
             +I +FR M    L+P  VTFV VL ACSHGGLV+ G + F SM  +YG++PQ+EHYGC
Sbjct: 361 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC 420

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R GRL+EAY LI++M    + ++   LL+AC++H+N ++GE   + L D     
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQAD 480

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YVLLS++ A + +W+EA QVR  M ++G+QK PG S IE N  +H FL     HP+ 
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRK 540

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           + I   L+++   L+  GY P    V+ D+++ EKE  ++ HSE+LA+ +GLI++     
Sbjct: 541 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTV 600

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IR+ KNLR+C DCH A KL+++I RR+++VRD  RFH F+ G CSC D+W
Sbjct: 601 IRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 225/514 (43%), Gaps = 81/514 (15%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL---FRSR 62
           L+   +++LL+  K + Q L IH Q++ +G     S    + F  L  C       + SR
Sbjct: 47  LDQKQIISLLQRSKHINQVLPIHAQLIRNGH----SQDPFMVFELLRSCSKCHAIDYASR 102

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           I F    NPN++++  L+ G+  S +  +A+ LY+ ML   I+ P+N+    +L +C   
Sbjct: 103 I-FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSIL-PDNYLMASILKACGSQ 160

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE-------------- 168
            + + G ++H   +K GL  +  +R  ++  Y   G + +A +VFE              
Sbjct: 161 LALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMIS 220

Query: 169 -----------GSL-----ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
                      G++      +D V +  +I+G+ + +E   AL  FR MQ   ++P+ FT
Sbjct: 221 SYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFT 280

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            V + SAC++L    IG+  H+ + K    +  N+ +  A+INMY++CG ++ A+ VF  
Sbjct: 281 IVCVLSACSQLGALEIGRWVHSYMRKFE--IELNLFVGNALINMYSRCGSIDEAQTVFDE 338

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           M   +    +++MISG +  GK                                 QA+EL
Sbjct: 339 MK-DRDVITYNTMISGLSMNGKSR-------------------------------QAIEL 366

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F  M    + P  VT V VL AC   G +DFG ++      +      I     ++D+  
Sbjct: 367 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLG 426

Query: 393 KCGSIDTALSVFYKIPKNLKTVS---LFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           + G ++ A    Y + + +K      +  +++S    H   E    V + +E  G + D 
Sbjct: 427 RVGRLEEA----YDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG-QADS 481

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            T+V +    +  G  +E  Q    M   G++ +
Sbjct: 482 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 515


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/714 (33%), Positives = 398/714 (55%), Gaps = 47/714 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCK-NGLFRSRILFS 66
           SS+L       S+++   IHG I   G+    I ++ L+S +    CK NGL   R +F 
Sbjct: 220 SSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY----CKFNGLIDGRRIFD 275

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   +   WNT++ GYS+    +E++ L+  M+++    P+  T   +L +C  L   +
Sbjct: 276 KMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLE 333

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G  +H ++I  G E D    N LI+ Y+  G +  + +VF G   +D VS+N++IN Y 
Sbjct: 334 FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYI 393

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+ LF KM  + ++PD+ T+V + S  T+L D  +GK+ H  + K +G   SN
Sbjct: 394 QNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK-MG-FNSN 450

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +++   +++MYAKC                                G++  + ++F+ M 
Sbjct: 451 IVVSNTLVDMYAKC--------------------------------GEMGDSLKVFENMK 478

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            RD+++W  +I+        +  L +  +M + G+ PD  TM+++L  C  L A   GK 
Sbjct: 479 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 538

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   I  +    ++ +   +I+MY+KCGS+  +  VF K+ K  K V  + ++IS    
Sbjct: 539 IHG-CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF-KLMKT-KDVVTWTALISACGM 595

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           +G G+ ++  F EME  G+ PD V FV ++ ACSH GLVEEG  +F  M  +Y I+P++E
Sbjct: 596 YGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIE 655

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C+VDLL+R   LD+A   I SMP   +S IW ALL+ACR+  + +I E   +++++L
Sbjct: 656 HYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIEL 715

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            PD   +YVL+SN+ A   +W++ R +RK +   G++K PG S++E    ++ F    K 
Sbjct: 716 NPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKF 775

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
             Q +E+  +L  +   +   GY+ N   V+ D+DE+EK  ++  HSE+LA+AFGL+N++
Sbjct: 776 FEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTK 835

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               +++ KNLR+C DCH   K +S+I +RE++VRDA RFH+FK G CSC D+W
Sbjct: 836 PGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 146/528 (27%), Positives = 269/528 (50%), Gaps = 44/528 (8%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+   L S  +  Q  ++H  I+  GL+H  I S++LI+ +A        F    L S 
Sbjct: 17  SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASP 76

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             + N+++WN+++R  + +    EAL LY S   +  + P+ +TFP V+N+CA L  F+ 
Sbjct: 77  --SNNVYLWNSIIRALTHNGLFSEALSLY-SETQRIRLQPDTYTFPSVINACAGLLDFEM 133

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              IH  ++  G   DL+I NALI  Y  F  ++ A KVFE    RD+VS+N+LI+GY  
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL ++ + ++  + PD++T  ++  AC  L     G   H ++ K +G +  ++
Sbjct: 194 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEK-IG-IKKDV 251

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++   +++MY K   +    R+F  M + +   +W++MI GY+                 
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDKMVL-RDAVSWNTMICGYS----------------- 293

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                         QVG + ++++LF +M +    PD +T+ ++L+AC  LG L+FGK +
Sbjct: 294 --------------QVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYV 338

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  Y+    +  +   +  +I+MYAKCG++  +  VF  + K   +VS +NS+I+   Q+
Sbjct: 339 H-DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM-KCKDSVS-WNSMINVYIQN 395

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
           G  + ++ +F+ M+   +KPD VT+V +L   +  G +  GK+    +   G    +   
Sbjct: 396 GSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS 454

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             +VD+ A+ G + ++  + ++M    + + W  ++A+C    +  +G
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKA-RDIITWNTIIASCVHSEDCNLG 501



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 222/462 (48%), Gaps = 62/462 (13%)

Query: 115 VLNSCARLSSFKSGC-------------QIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           VL+ C+R + F S               ++H  II  GL   +     LI  Y+ F    
Sbjct: 6   VLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPT 65

Query: 162 NAHKVFE-GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           ++  VF   S + ++  +N++I           AL L+ + Q   +QPD +TF ++ +AC
Sbjct: 66  SSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC 125

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L D  + K  H  V  ++G  GS++ +  A+I+MY                       
Sbjct: 126 AGLLDFEMAKSIHDRVL-DMG-FGSDLYIGNALIDMYC---------------------- 161

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
                     R   +++AR++F++M  RD+VSW ++ISGY+  G +++ALE++ +  +LG
Sbjct: 162 ----------RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PD  TM +VLRAC GLG+++ G  +H   IE +   +++ +   ++ MY K   +   
Sbjct: 212 VVPDSYTMSSVLRACGGLGSVEEGDIIH-GLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 270

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             +F K+   L+    +N++I G +Q GL E SI +F EM +   KPD +T  ++L AC 
Sbjct: 271 RRIFDKMV--LRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACG 327

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           H G +E GK   + M+  G +        ++++ A+ G L  +  +   M    +SV W 
Sbjct: 328 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC-KDSVSWN 386

Query: 521 ALLAACRLHRNAKIGEIAGQKLL-----DLEPDHGAHYVLLS 557
           +++      +N    E    KL      D++PD   + +LLS
Sbjct: 387 SMINV--YIQNGSFDE--AMKLFKMMKTDVKPDSVTYVMLLS 424


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/719 (33%), Positives = 401/719 (55%), Gaps = 46/719 (6%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIV---HSGLNHHISS-SQLISFFALSGCKNGLFRSR 62
           E  +LL    + KSL+    IH Q+V    +  +  I+  + LI+ ++  G       +R
Sbjct: 25  EVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKC---AR 81

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF ++   N+  W+ LM GY       E L L+ +++S     PN + F  VL+ CA  
Sbjct: 82  KLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADS 141

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              K G Q H +++K GL    +++NALIH YS   ++++A ++ +     D+ SYN+++
Sbjct: 142 GRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSIL 201

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +   +      A  + ++M D C+  D+ T+V++   C ++ D ++G Q HA        
Sbjct: 202 SALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHA-------- 253

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
                LLKT ++              VF +          S++I  Y + G++  AR+ F
Sbjct: 254 ----QLLKTGLV------------FDVFVS----------STLIDTYGKCGEVLNARKQF 287

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D +  R++V+WTA+++ Y Q G F + L LF KME     P+E T   +L AC  L AL 
Sbjct: 288 DGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALA 347

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           +G  LH + + +  F  ++ +  A+I+MY+K G+ID++ +VF  +    + V  +N++I 
Sbjct: 348 YGDLLHGRIVMSG-FKNHLIVGNALINMYSKSGNIDSSYNVFSNMMN--RDVITWNAMIC 404

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           G + HGLG+ ++ VF++M   G  P+ VTF+ VL AC H  LV+EG  +F+ ++  + ++
Sbjct: 405 GYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVE 464

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           P +EHY CMV LL R G LDEA   +++      + V WR LL AC +HRN  +G+   +
Sbjct: 465 PGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITE 524

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            ++ ++P     Y LLSNM A+  +W+   ++RKLM +  I+K PG S+++     H F+
Sbjct: 525 TVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFV 584

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           +   +HP++ +I   ++ +   +K  GY P+   V+ DV++E+KE  +S+HSEKLALA+G
Sbjct: 585 SEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYG 644

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+       IRI KNLR+C DCH+A KL+S+   R I+VRDA RFH F++G C+C D W
Sbjct: 645 LMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 361/622 (58%), Gaps = 46/622 (7%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           +P   T   ++ S AR +S      +H  ++  G + D F+   LI+ +S    ++NA K
Sbjct: 66  NPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARK 125

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--- 222
           VF+ +  R +  +N L    A        L L+ +M    +  D FT+  +  AC     
Sbjct: 126 VFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASEC 185

Query: 223 -LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            ++  + GK+ HA + ++    G+++ + T +++MYA+ G ++ A  V            
Sbjct: 186 LVSFLQKGKEIHAHILRH--GYGAHVHVMTTLMDMYARFGCVSYASAV------------ 231

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
                               FD+M  +++VSW+AMI+ Y++ G   +ALELF +M  L  
Sbjct: 232 --------------------FDEMPVKNVVSWSAMIACYAKNGKPYEALELFREM-MLNT 270

Query: 342 H---PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           H   P+ VTMV+VL+AC    AL+ GK +H  YI        + + +A+I MYA+CG ++
Sbjct: 271 HDSVPNSVTMVSVLQACAAFAALEQGKLIHA-YILRRGLDSILPVISALITMYARCGKLE 329

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           +   +F ++ K  K V L+NS+IS    HG G  +I +F EM   G  P  ++F++VL A
Sbjct: 330 SGQLIFDRMHK--KDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGA 387

Query: 459 CSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLVEEGK+ FESM+  +GI+P +EHY CMVDLL R  RLDEA  +I+ +  +    
Sbjct: 388 CSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPK 447

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W +LL ACR+H + ++ E A ++L  LEP +  +YVLL+++ AE   W+E ++V+KL+D
Sbjct: 448 VWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLD 507

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
              +QK PG S+IE    ++ F +  + +PQ +++  +L +++ ++K  GY P T  V++
Sbjct: 508 SRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLY 567

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           D+D+EEKE +V  HSEKLA+AFGLIN+   +TIRITKNLR+C DCH   K +S+   REI
Sbjct: 568 DLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREI 627

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           MVRD  RFH FK G CSC D+W
Sbjct: 628 MVRDLNRFHHFKDGVCSCGDYW 649



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 131/270 (48%), Gaps = 6/270 (2%)

Query: 21  LKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           L++  +IH  I+  G   H+   + L+  +A  GC   +  +  +F ++   N+  W+ +
Sbjct: 190 LQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGC---VSYASAVFDEMPVKNVVSWSAM 246

Query: 80  MRGYSRSDSPQEALVLYTS-MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           +  Y+++  P EAL L+   ML+     PN+ T   VL +CA  ++ + G  IH +I++ 
Sbjct: 247 IACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRR 306

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL+  L + +ALI  Y+  G + +   +F+    +D+V +N+LI+ Y        A+ +F
Sbjct: 307 GLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIF 366

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M D    P   +F+++  AC+       GK+    + K  G +  ++     ++++  
Sbjct: 367 EEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHG-IQPSVEHYACMVDLLG 425

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           +   ++ A ++   + +      W S++  
Sbjct: 426 RANRLDEAAKIIEDLRIEPGPKVWGSLLGA 455


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/426 (48%), Positives = 291/426 (68%), Gaps = 4/426 (0%)

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +   R L   +++    SWT+MI+GY Q G   +A+ LF KME  G+  +EVT+VAVL A
Sbjct: 177 LSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAA 236

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  LGALD G R+H+ Y     F RN+ ++  +IDMY KCG ++ A  VF ++ +  +TV
Sbjct: 237 CADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEE--RTV 293

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             ++++I GLA HG  E ++ +F +M  +G++P+GVTF+ +L ACSH GL+ EG++FF S
Sbjct: 294 VSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFAS 353

Query: 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M  +YGI PQ+EHYGCMVDLL+R G L EA+  I +MP   N V+W ALL ACR+H+N +
Sbjct: 354 MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVE 413

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           + E A + LL+L+P +  +YV+LSN+ AE  RWE+  +VRK M D  ++K PGWS I  +
Sbjct: 414 MAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 473

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
           G +H F+A ++SHP T++I    +++  +++  GYVPNT  V+ D++E EK   VS HSE
Sbjct: 474 GVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 533

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLAL FGL+N+ ++  IRI KNLRIC DCH AFKL+S I  REI+VRD  RFH F   +C
Sbjct: 534 KLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSC 593

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 594 SCRDYW 599



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 168/399 (42%), Gaps = 74/399 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN- 70
           + LL +  S  +  Q+H QI+ +  N  +S   L     +         ++ +F  ++  
Sbjct: 65  IDLLRNFNSPFELRQVHAQIIKT--NAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQ 122

Query: 71  -PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
            P  F+WN+ ++  +  DSP +A++L+   L +  V P+ FT   VL +C  L    +G 
Sbjct: 123 KPETFVWNSCLKALAEGDSPIDAIMLFYR-LRQYDVCPDTFTCSSVLRACLNLLDLSNGR 181

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +H  + K G                                     S+ ++I GY Q  
Sbjct: 182 ILHGVVEKVGFR-----------------------------------SWTSMIAGYVQCG 206

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           +   A+ LF KM+++ ++ +  T VA+ +AC +L    +G + H   Y N      N+ +
Sbjct: 207 KAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHE--YSNRHGFKRNVRI 264

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
              +I+MY KCG +                                E A ++F++M++R 
Sbjct: 265 SNTLIDMYVKCGCL--------------------------------EEACKVFEEMEERT 292

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
           +VSW+AMI G +  G   +AL LF  M  +GI P+ VT + +L AC  +G +  G+R   
Sbjct: 293 VVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFA 352

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
               +      I     ++D+ ++ G +  A      +P
Sbjct: 353 SMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 391



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 128/279 (45%), Gaps = 7/279 (2%)

Query: 51  LSGCKN--GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN 108
           L  C N   L   RIL   ++      W +++ GY +    +EA+ L+  M   G V  N
Sbjct: 168 LRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCN 226

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
             T   VL +CA L +   G +IH +  + G + ++ I N LI  Y   G +  A KVFE
Sbjct: 227 EVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFE 286

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
               R +VS++ +I G A       AL LF  M    I+P+  TF+ +  AC+ +     
Sbjct: 287 EMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISE 346

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G++F A + ++ G +   +     ++++ ++ GL++ A      M M  +   W +++  
Sbjct: 347 GRRFFASMTRDYGII-PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 405

Query: 289 YTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVG 324
                 +E A +    + + D ++   +  + + Y++ G
Sbjct: 406 CRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAG 444


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/619 (36%), Positives = 356/619 (57%), Gaps = 47/619 (7%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           L+ D+F  NAL+  Y+  G I N    F+    RD VSYNT I G++    P  +L LF+
Sbjct: 85  LKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH-AVVYKN-LGCVGSNMLLKTAVINMY 257
           +MQ    +P  +T V++ +A  +L+D R GKQ H +++ +N LG    N+ +  A+ +MY
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLG----NVFIWNALTDMY 200

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG------------------------ 293
           AKCG +  A  +F  +   K+  +W+ MISGY + G                        
Sbjct: 201 AKCGEIEQARWLFDCL-TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM 259

Query: 294 -----------KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                      +++ AR++F +  ++D+V WTAM+ GY++ G    AL LF +M    I 
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE 319

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD  T+ +V+ +C  L +L  G+ +H + I       N+ +++A+IDMY+KCG ID A S
Sbjct: 320 PDSYTLSSVVSSCAKLASLHHGQAVHGKSIL-AGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +P   + V  +N++I G AQ+G  + ++ +F  M     KPD VTF+ +L AC H 
Sbjct: 379 VFNLMPT--RNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
             +E+G+++F+S+ N +G+ P ++HY CMV+LL R GR+++A  LI++M +D + +IW  
Sbjct: 437 NWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL+ C    +    E+A + L +L+P     Y++LSNM A   RW++   VR LM    +
Sbjct: 497 LLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G+S+IE +  +HRF +  ++HP++++I   L  +  KL+  G+ PNT  V+ DV E
Sbjct: 557 KKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGE 616

Query: 642 EEKETVVSYHSEKLALAFGLINSRSK-ETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           +EK   + +HSEKLALAFGLI   +    IRI KN+RIC DCH   K  S I  R+I++R
Sbjct: 617 DEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILR 676

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D+ RFH F  G CSC D W
Sbjct: 677 DSNRFHHFSTGKCSCNDNW 695



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 223/490 (45%), Gaps = 79/490 (16%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           H+ LL L      L+ A  +  +++   +    S + L+S +A SG    L   +  F +
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLKRDI---FSWNALLSAYAKSGSIQNL---KATFDR 114

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   +NT + G+S +  PQE+L L+  M  +G   P  +T   +LN+ A+LS  + 
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGF-EPTEYTIVSILNASAQLSDLRY 173

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH  II      ++FI NAL   Y+  G I  A  +F+    ++LVS+N +I+GYA+
Sbjct: 174 GKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK 233

Query: 188 VKEPCPALWLFRKMQDSCIQPDAF---TFVAMFSACTELNDPRIGKQFHAVVYKNLGC-- 242
             +P   + L  +M+ S   PD     T +A +  C  +++ R  + F     K++ C  
Sbjct: 234 NGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEAR--RVFSEFKEKDIVCWT 291

Query: 243 ---VG--------------SNMLLK---------TAVINMYAKCGLMNMAERVFST---M 273
              VG              + MLL+         ++V++  AK   ++  + V       
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           G++ +    S++I  Y++ G I+ AR +F+ M  R++VSW AMI G +Q G    ALELF
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M      PD VT + +L AC+    ++ G    Q+Y +++    N    T  +D YA 
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQG----QEYFDSIT---NQHGMTPTLDHYA- 463

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
                                     +++ L + G  E ++A+ +    M   PD + + 
Sbjct: 464 -------------------------CMVNLLGRTGRIEQAVALIKN---MAHDPDFLIWS 495

Query: 454 TVLCACSHGG 463
           T+L  CS  G
Sbjct: 496 TLLSICSTKG 505



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 143/266 (53%), Gaps = 8/266 (3%)

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           ++  L   ++++YAK G +  A+ +F  M + +   +W++++S Y + G I+  +  FD+
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKM-LKRDIFSWNALLSAYAKSGSIQNLKATFDR 114

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD VS+   I+G+S      ++LELF +M+  G  P E T+V++L A   L  L +G
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYG 174

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K++H   I     G N+F+  A+ DMYAKCG I+ A  +F  + K  K +  +N +ISG 
Sbjct: 175 KQIHGSIIVRNFLG-NVFIWNALTDMYAKCGEIEQARWLFDCLTK--KNLVSWNLMISGY 231

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A++G  E  I +  +M L G  PD VT  T++ A    G V+E ++ F       I    
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC-- 289

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSM 510
             +  M+   A++GR ++A  L   M
Sbjct: 290 --WTAMMVGYAKNGREEDALLLFNEM 313



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 153/311 (49%), Gaps = 8/311 (2%)

Query: 36  LNHHISSSQLISFFALSGCKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALV 94
           L+ H+     +S    + C+ G +  +R +FS+    +I  W  +M GY+++   ++AL+
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           L+  ML + I  P+++T   V++SCA+L+S   G  +H   I  GL  +L + +ALI  Y
Sbjct: 309 LFNEMLLEHI-EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           S  G+I++A  VF     R++VS+N +I G AQ      AL LF  M     +PD  TF+
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
            + SAC   N    G+++   +    G +   +     ++N+  + G +  A  +   M 
Sbjct: 428 GILSACLHCNWIEQGQEYFDSITNQHG-MTPTLDHYACMVNLLGRTGRIEQAVALIKNMA 486

Query: 275 MSKSTAAWSSMISGYTREGKIER----ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                  WS+++S  + +G I      AR LF ++D    V +  + + Y+ +G +    
Sbjct: 487 HDPDFLIWSTLLSICSTKGDIVNAEVAARHLF-ELDPTIAVPYIMLSNMYASMGRWKDVA 545

Query: 331 ELFGKMESLGI 341
            +   M+S  +
Sbjct: 546 SVRNLMKSKNV 556



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 43/254 (16%)

Query: 355 CVGLGALDFGKRLHQQYIENVVF-GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK---- 409
           CV    ++  KRL Q ++E+ +F   + FL   ++ +YAK G +  A ++F K+ K    
Sbjct: 32  CVRTNEINQAKRL-QSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIF 90

Query: 410 ----------------NLK----------TVSLFNSIISGLAQHGLGETSIAVFREMELM 443
                           NLK          +VS +N+ I+G + +   + S+ +F+ M+  
Sbjct: 91  SWNALLSAYAKSGSIQNLKATFDRMPFRDSVS-YNTTIAGFSGNSCPQESLELFKRMQRE 149

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G +P   T V++L A +    +  GKQ   S++       +  +  + D+ A+ G +++A
Sbjct: 150 GFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQA 209

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
             L   +    N V W  +++    +   +  IG +   +L    PD     V +S ++A
Sbjct: 210 RWLFDCLT-KKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ----VTMSTIIA 264

Query: 562 ---ETYRWEEARQV 572
              +  R +EAR+V
Sbjct: 265 AYCQCGRVDEARRV 278


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 361/611 (59%), Gaps = 40/611 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +  +LN+C    + + G ++H H+IK       ++R  L+ FY     + +A KV +   
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 114

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            +++VS+  +I+ Y+Q      AL +F +M  S  +P+ FTF  + ++C   +   +GKQ
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ 174

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H ++ K      S++ + +++++MYAK                                
Sbjct: 175 IHGLIVK--WNYDSHIFVGSSLLDMYAKA------------------------------- 201

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+I+ AR++F+ + +RD+VS TA+I+GY+Q+G   +ALE+F ++ S G+ P+ VT  ++
Sbjct: 202 -GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASL 260

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L A  GL  LD GK+ H   +   +    + L  ++IDMY+KCG++  A  +F  +P+  
Sbjct: 261 LTALSGLALLDHGKQAHCHVLRRELPFYAV-LQNSLIDMYSKCGNLSYARRLFDNMPE-- 317

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           +T   +N+++ G ++HGLG   + +FR M +   +KPD VT + VL  CSHG + + G  
Sbjct: 318 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLN 377

Query: 471 FFESML--NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            F+ M+   YG KP  EHYGC+VD+L R GR+DEA+  I+ MP    + +  +LL ACR+
Sbjct: 378 IFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRV 437

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H +  IGE  G++L+++EP++  +YV+LSN+ A   RW +   VR +M    + K PG S
Sbjct: 438 HLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRS 497

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           +I+H  TLH F A+ ++HP+ +E+   +K++++K+K AGYVP+   V++DVDEE+KE ++
Sbjct: 498 WIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKML 557

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLAL FGLI +     IR+ KNLRIC DCH   K+ S+++ RE+ +RD  RFH  
Sbjct: 558 LGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQI 617

Query: 709 KKGNCSCMDFW 719
             G CSC D+W
Sbjct: 618 VDGICSCGDYW 628



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 205/425 (48%), Gaps = 53/425 (12%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ALL +C   ++L+   ++H  ++ +  L      ++L+ F+    C   L  +R +  ++
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC---LEDARKVLDEM 113

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVLNSCARLSSFKS 127
              N+  W  ++  YS++    EAL ++  M+ S G   PN FTF  VL SC R S    
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG--KPNEFTFATVLTSCIRASGLGL 171

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH  I+K+  +  +F+ ++L+  Y+  G I  A ++FE    RD+VS   +I GYAQ
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
           +     AL +F ++    + P+  T+ ++ +A + L     GKQ H  V +    +    
Sbjct: 232 LGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE--LPFYA 289

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-D 306
           +L+ ++I+MY+KCG ++ A R+F  M   ++  +W++M+ GY++ G      +LF  M D
Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAMLVGYSKHGLGREVLELFRLMRD 348

Query: 307 QR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           ++    D V+  A++SG S            G+ME  G++  +           G+ A +
Sbjct: 349 EKRVKPDAVTLLAVLSGCSH-----------GRMEDTGLNIFD-----------GMVAGE 386

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
           +G +   ++     +G        ++DM  + G ID A     ++P    T  +  S++ 
Sbjct: 387 YGTKPGTEH-----YG-------CIVDMLGRAGRIDEAFEFIKRMPSK-PTAGVLGSLLG 433

Query: 423 GLAQH 427
               H
Sbjct: 434 ACRVH 438


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/718 (35%), Positives = 396/718 (55%), Gaps = 52/718 (7%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS---SSQLISFFALSGCKNGLFRSRI 63
           + ++ L++C+    +K    IH  I+ S  NH      S+ LI+ +A  G      R   
Sbjct: 253 TFVSALQACEGPTFIKIGRGIHAVILKS--NHFTDVYVSNALIAMYANCGQMEDAER--- 307

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   +   WNTL+ G  ++D   +A+  +  M   G   P+  +   ++ +  R +
Sbjct: 308 VFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSG-QKPDQVSVLNMIAASGRSA 366

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +  +G ++H + IK G++ ++ I N+LI  Y     +      FE    +DL+S+ T+I 
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ +    AL L RK+Q   +  D     ++  AC+ L   ++ K+ H  V K  G +
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK--GGL 484

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            +++L++ A++N+Y +  L                                ++ AR +F+
Sbjct: 485 -ADILIQNAIVNVYGELAL--------------------------------VDYARHVFE 511

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            ++ +D+VSWT+MI+     G   +ALELF  +    I PD +T+V+VL A   L +L  
Sbjct: 512 SINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKK 571

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H   I    F   + +  +++DMYA+CG+++ A ++F  + +  + + L+ S+I+ 
Sbjct: 572 GKEIHGFLIRKGFFLEGL-IANSLVDMYARCGTMENARNIFNYVKQ--RDLILWTSMINA 628

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
              HG G+ +I +F +M    + PD +TF+ +L ACSH GLV EGKQ FE M N Y ++P
Sbjct: 629 NGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEP 688

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
             EHY C+VDLLAR   L+EAY  +++MP + ++ +W ALL ACR+H N  +GE+A +KL
Sbjct: 689 WPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKL 748

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           L L  ++  +YVL+SN  A   RW +  +VR +M  + ++K PG S+IE    +H F+A 
Sbjct: 749 LQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMAR 808

Query: 603 KKSHPQTKEIELMLKDMTMKLKS-AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
            KSHPQ   I L L   T  LK   GY   T  V  DV EEEK  ++  HSE+LAL +GL
Sbjct: 809 DKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGL 868

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + +     +RITKNLRIC DCH  FK+ SEI +R ++VRDA RFH F++G CSC DFW
Sbjct: 869 LVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 254/531 (47%), Gaps = 63/531 (11%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI-LFS 66
           +S  L L  S K+L Q  Q+H   + +   +++ S  L + F     K G F   + +F 
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKT--QNYLDSVFLDTKFVHMYGKCGSFYDAVKVFD 106

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++    IF WN ++     +    EA+ LY  M   G VS + FTFP VL +C      +
Sbjct: 107 KMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLG-VSLDAFTFPCVLKACGAFKERR 165

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR--DLVSYNTLING 184
            GC+IH   +K G    +F+ NALI  Y+  G +  A  +F+  L    D VS+N++I+ 
Sbjct: 166 LGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISA 225

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +    E   AL LFR+MQ+  ++ + +TFV+   AC      +IG+  HAV+ K+     
Sbjct: 226 HVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHF-- 283

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +++ +  A+I MYA CG M  AERVF +M + K   +W++++SG                
Sbjct: 284 TDVYVSNALIAMYANCGQMEDAERVFKSM-LFKDCVSWNTLLSG---------------- 326

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M Q D+               +S A+  F  M+  G  PD+V+++ ++ A      L  G
Sbjct: 327 MVQNDM---------------YSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAG 371

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             +H   I++ +   N+ +  ++IDMY KC  +    S F  +P+  K +  + +II+G 
Sbjct: 372 MEVHAYAIKHGI-DSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPE--KDLISWTTIIAGY 428

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           AQ+     ++ + R+++L  +  D +   ++L ACS  GL  E  +  + +  Y +K   
Sbjct: 429 AQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS--GLKSE--KLIKEIHGYVLK--- 481

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPY---------DANSVIWRALLAAC 526
              G + D+L ++  ++  YG +  + Y           + V W +++  C
Sbjct: 482 ---GGLADILIQNAIVN-VYGELALVDYARHVFESINSKDIVSWTSMITCC 528



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 203/459 (44%), Gaps = 43/459 (9%)

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN  +     R  S  ++ Q     +T  L      P    +   L  CA   +   G Q
Sbjct: 8   PNHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQ 67

Query: 131 IHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           +H H +K     D +F+    +H Y   G   +A KVF+    R + ++N +I       
Sbjct: 68  LHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAG 127

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNML 248
               A+ L+++M+   +  DAFTF  +  AC    + R+G + H V  K   C  G  + 
Sbjct: 128 RYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVK---CGYGGFVF 184

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--MD 306
           +  A+I MYAKCG                                 +  AR LFD   M+
Sbjct: 185 VCNALIAMYAKCG--------------------------------DLGGARVLFDSGLME 212

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           + D VSW ++IS +   G   +AL LF +M+ +G+  +  T V+ L+AC G   +  G+ 
Sbjct: 213 KDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRG 272

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   +++  F  +++++ A+I MYA CG ++ A  VF  +    K    +N+++SG+ Q
Sbjct: 273 IHAVILKSNHF-TDVYVSNALIAMYANCGQMEDAERVFKSML--FKDCVSWNTLLSGMVQ 329

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           + +   +I  F++M+  G KPD V+ + ++ A      +  G +     + +GI   M  
Sbjct: 330 NDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHI 389

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              ++D+  +   +       + MP + + + W  ++A 
Sbjct: 390 GNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAG 427


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/702 (34%), Positives = 397/702 (56%), Gaps = 44/702 (6%)

Query: 21  LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           ++  +  HG  +  GL   +  +S L+  ++  G    L  +R+LF   +  N+  WN++
Sbjct: 315 VRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGY---LCEARVLF-DTNEKNVISWNSM 370

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
           + GYS+    + A  L   M  +  V  N  T   VL  C     F    +IH + ++ G
Sbjct: 371 IGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHG 430

Query: 140 -LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
            ++ D  + NA +  Y+  G ++ A  VF G  ++ + S+N LI G+ Q   P  AL L+
Sbjct: 431 FIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLY 490

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
             M+ S ++PD FT  ++ SAC  L     GK+ H  + +N      +  +  +++++Y 
Sbjct: 491 LLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRN--GFELDEFICISLVSLYV 548

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           +CG + +A+  F  M   K+   W++MI+G+++          FD               
Sbjct: 549 QCGKILLAKLFFDNM-EEKNLVCWNTMINGFSQN------EFPFD--------------- 586

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
                     AL++F +M S  I PDE++++  L AC  + AL  GK LH   +++ +  
Sbjct: 587 ----------ALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHL-T 635

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
            + F+T ++IDMYAKCG ++ + ++F ++  +LK    +N +I+G   HG G  +I +F+
Sbjct: 636 EHSFVTCSLIDMYAKCGCMEQSQNIFDRV--HLKGEVTWNVLITGYGIHGHGRKAIELFK 693

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARD 497
            M+  G +PD VTF+ +L AC+H GLV EG ++   M + +GIKP++EHY C+VD+L R 
Sbjct: 694 SMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRA 753

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           GRL+EA  L+  +P   +S IW +LL++CR +R+  IGE    KLL+L PD   +YVL+S
Sbjct: 754 GRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLIS 813

Query: 558 NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
           N  A   +W+E R++R+ M + G+QK  G S+IE  G + RFL   +S  Q+ +I+    
Sbjct: 814 NFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWI 873

Query: 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           ++  K+   GY P+T  V+ +++E+EK  ++  HSEKLA++FGL+N+    T+R+ KNLR
Sbjct: 874 ELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLR 933

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IC DCH A KL+S+I +REI+VRD  RFH FK G CSC D+W
Sbjct: 934 ICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 247/519 (47%), Gaps = 48/519 (9%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           LL L    K+++   +IH  I  S    N  +  ++L++ +++    +  + S ++F+  
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSIC---DSPYDSCLVFNAS 155

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+F+WN L+ GY R+   ++A+ ++  M+S     P+NFT P V+ +C  +   + G
Sbjct: 156 RRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLG 215

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H   +K  +  D+F+ NALI  Y  FG++ +A KVF+    R+LVS+N+++    + 
Sbjct: 216 EAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLEN 275

Query: 189 KEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                +  LF+ +   D  + PD  T V +   C    + R+G  FH +  K LG  G  
Sbjct: 276 GVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALK-LGLCGE- 333

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + + +++++MY+KCG +  A  +F T    K+  +W+SMI GY+++     A +L  +M 
Sbjct: 334 LKVNSSLLDMYSKCGYLCEARVLFDT--NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQ 391

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             D V                                +EVT++ VL  C         K 
Sbjct: 392 MEDKVK------------------------------VNEVTLLNVLPVCEEEIQFLKLKE 421

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   + +     +  +  A +  YAKCGS+  A  VF  +    K VS +N++I G  Q
Sbjct: 422 IHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMES--KMVSSWNALIGGHVQ 479

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +G    ++ ++  M   GL+PD  T  ++L AC+    +  GK+   SML  G   +++ 
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF--ELDE 537

Query: 487 YGC--MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           + C  +V L  + G++  A     +M  + N V W  ++
Sbjct: 538 FICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMI 575



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 172/341 (50%), Gaps = 11/341 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +SLL+     KSL    +IHG ++ +G  L+  I  S L+S +   G    +  +++ F 
Sbjct: 506 ASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICIS-LVSLYVQCG---KILLAKLFFD 561

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            ++  N+  WNT++ G+S+++ P +AL ++  MLS  I  P+  +    L +C+++S+ +
Sbjct: 562 NMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIW-PDEISIIGALGACSQVSALR 620

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G ++HC  +K  L    F+  +LI  Y+  G +  +  +F+    +  V++N LI GY 
Sbjct: 621 LGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYG 680

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  A+ LF+ MQ++  +PD+ TF+A+ +AC        G ++   +    G +   
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFG-IKPK 739

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +     V++M  + G +N A  + + +     +  WSS++S       ++   ++ +++ 
Sbjct: 740 LEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLL 799

Query: 307 Q--RDLVSWTAMISG-YSQVGGFSQALELFGKMESLGIHPD 344
           +   D      +IS  Y+++G + +  ++  +M+ +G+  D
Sbjct: 800 ELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKD 840



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 144/283 (50%), Gaps = 12/283 (4%)

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLG 359
           +F+   +++L  W A++SGY +   F  A+ +F +M SL    PD  T+  V++ACVG+ 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            +  G+ +H   ++  V   ++F+  A+I MY K G +++A+ VF K+P+  + +  +NS
Sbjct: 211 DVRLGEAVHGFALKTKVLS-DVFVGNALIAMYGKFGFVESAVKVFDKMPQ--RNLVSWNS 267

Query: 420 IISGLAQHGLGETSIAVFREM--ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           ++    ++G+ E S  +F+ +     GL PD  T VTV+  C+  G V  G  F    L 
Sbjct: 268 VMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALK 327

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
            G+  +++    ++D+ ++ G L EA  L  +   + N + W +++      R+ + G  
Sbjct: 328 LGLCGELKVNSSLLDMYSKCGYLCEARVLFDT--NEKNVISWNSMIGGYSKDRDFR-GAF 384

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
              + + +E     + V L N+L      EE  Q  KL +  G
Sbjct: 385 ELLRKMQMEDKVKVNEVTLLNVLPVC---EEEIQFLKLKEIHG 424


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/659 (34%), Positives = 357/659 (54%), Gaps = 45/659 (6%)

Query: 65   FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            F + +  N+ +WN ++  Y   D  + +  ++  M  + IV PN +T+P +L +C RL  
Sbjct: 407  FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIRLGD 465

Query: 125  FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             + G QIH  IIK   + + ++ + LI  Y+  G ++ A  +      +D+VS+ T+I G
Sbjct: 466  LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 525

Query: 185  YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            Y Q      AL  FR+M D  I+ D        SAC  L   + G+Q HA       CV 
Sbjct: 526  YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA-----QACVS 580

Query: 245  ---SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
               S++  + A++ +Y++C                                GKIE +   
Sbjct: 581  GFSSDLPFQNALVTLYSRC--------------------------------GKIEESYLA 608

Query: 302  FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
            F+Q +  D ++W A++SG+ Q G   +AL +F +M   GI  +  T  + ++A      +
Sbjct: 609  FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 668

Query: 362  DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
              GK++H   I    +     +  A+I MYAKCGSI  A   F ++  + K    +N+II
Sbjct: 669  KQGKQVHA-VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEV--STKNEVSWNAII 725

Query: 422  SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
            +  ++HG G  ++  F +M    ++P+ VT V VL ACSH GLV++G  +FESM   YG+
Sbjct: 726  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 785

Query: 481  KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
             P+ EHY C+VD+L R G L  A   IQ MP   ++++WR LL+AC +H+N +IGE A  
Sbjct: 786  SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 845

Query: 541  KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
             LL+LEP+  A YVLLSN+ A + +W+     R+ M + G++K PG S+IE   ++H F 
Sbjct: 846  HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 905

Query: 601  ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
               ++HP   EI    +D+T +    GYV +   ++ ++  E+K+ ++  HSEKLA++FG
Sbjct: 906  VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFG 965

Query: 661  LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            L++  +   I + KNLR+C DCH   K +S++  REI+VRDA RFH F+ G CSC D+W
Sbjct: 966  LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 252/519 (48%), Gaps = 49/519 (9%)

Query: 13  ALLESCKSLKQAL----QIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFR-SRILFS 66
            +LE+C+    A     QIH +I++ GL +  +  + LI  ++    +NG    +R +F 
Sbjct: 151 GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYS----RNGFVDLARRVFD 206

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +   W  ++ G S+++   EA+ L+  M   GI+ P  + F  VL++C ++ S +
Sbjct: 207 GLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLE 265

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H  ++K G   D ++ NAL+  Y   G + +A  +F     RD V+YNTLING +
Sbjct: 266 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLS 325

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+ LF++M    ++PD+ T  ++  AC+       G+Q HA   K LG   SN
Sbjct: 326 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK-LG-FASN 383

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             ++ A++N+YAKC                                  IE A   F + +
Sbjct: 384 NKIEGALLNLYAKC--------------------------------ADIETALDYFLETE 411

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             ++V W  M+  Y  +     +  +F +M+   I P++ T  ++L+ C+ LG L+ G++
Sbjct: 412 VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 471

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H Q I+   F  N ++ + +IDMYAK G +DTA  +  +     K V  + ++I+G  Q
Sbjct: 472 IHSQIIK-TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--KDVVSWTTMIAGYTQ 528

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +   + ++  FR+M   G++ D V     + AC+    ++EG+Q        G    +  
Sbjct: 529 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 588

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +V L +R G+++E+Y L        +++ W AL++ 
Sbjct: 589 QNALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSG 626



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 220/467 (47%), Gaps = 55/467 (11%)

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEF 142
           S  +S QE  +   S+ ++GI  PN+ T  ++L  C + + S   G ++H  I+K GL+ 
Sbjct: 22  SEDESFQEKRI--DSVENRGI-RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDS 78

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           +  +   L  FY   G +  A KVF+    R + ++N +I   A          LF +M 
Sbjct: 79  NGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMV 138

Query: 203 DSCIQPDAFTFVAMFSACTELNDP-RIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKC 260
              + P+  TF  +  AC   +    + +Q HA ++Y+ L     + ++   +I++Y++ 
Sbjct: 139 SENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGL---RDSTVVCNPLIDLYSRN 195

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +++A RVF  + + K  ++W +MISG ++  + E                        
Sbjct: 196 GFVDLARRVFDGLRL-KDHSSWVAMISGLSK-NECE------------------------ 229

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                 ++A+ LF  M  LGI P      +VL AC  + +L+ G++LH   ++ + F  +
Sbjct: 230 ------AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK-LGFSSD 282

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
            ++  A++ +Y   G++ +A  +F  + +  +    +N++I+GL+Q G GE ++ +F+ M
Sbjct: 283 TYVCNALVSLYFHLGNLISAEHIFSNMSQ--RDAVTYNTLINGLSQCGYGEKAMELFKRM 340

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
            L GL+PD  T  +++ ACS  G +  G+Q        G     +  G +++L A+   +
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 400

Query: 501 DEAYGLIQSMPYDANSVIWRALLAAC----------RLHRNAKIGEI 537
           + A         + N V+W  +L A           R+ R  +I EI
Sbjct: 401 ETALDYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 446



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 11/281 (3%)

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +G+  +      +   Y  +G +  A ++FD+M +R + +W  MI   +      +   L
Sbjct: 74  LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGL 133

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           F +M S  + P+E T   VL AC G   A D  +++H + +   +    + +   +ID+Y
Sbjct: 134 FVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTV-VCNPLIDLY 192

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           ++ G +D A  VF  +   LK  S + ++ISGL+++     +I +F +M ++G+ P    
Sbjct: 193 SRNGFVDLARRVFDGL--RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 250

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F +VL AC     +E G+Q    +L  G          +V L    G L  A  +  +M 
Sbjct: 251 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 310

Query: 512 YDANSVIWRAL---LAACRLHRNAKIGEIAGQKLLD-LEPD 548
              ++V +  L   L+ C     A   E+  +  LD LEPD
Sbjct: 311 -QRDAVTYNTLINGLSQCGYGEKAM--ELFKRMHLDGLEPD 348


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/666 (34%), Positives = 376/666 (56%), Gaps = 53/666 (7%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W  ++  +++    ++A+ L+  M   G V P+ FT+  VL++C  L 
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELG 70

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFY---SIFGYINNAHKVFEGSLARDLVSYNT 180
               G Q+H  +I+ GL  D+ +  +L+  Y   +  G ++++ KVFE     +++S+  
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 181 LINGYAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           +I  YAQ  E C   A+ LF KM    I+P+ F+F ++  AC  L+DP  G+Q ++   K
Sbjct: 131 IITAYAQSGE-CDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 189

Query: 239 ----NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
               ++ CVG+++      I+MYA+ G M  A + F  +   K+  ++++++ GY +  K
Sbjct: 190 LGIASVNCVGNSL------ISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYAKNLK 242

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            E                               +A  LF ++   GI     T  ++L  
Sbjct: 243 SE-------------------------------EAFLLFNEIADTGIGISAFTFASLLSG 271

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              +GA+  G+++H + ++   +  N  +  A+I MY++CG+I+ A  VF ++    + V
Sbjct: 272 AASIGAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEMED--RNV 328

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             + S+I+G A+HG    ++ +F +M   G KP+ +T+V VL ACSH G++ EG++ F S
Sbjct: 329 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 388

Query: 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   +GI P+MEHY CMVDLL R G L EA   I SMP  A++++WR LL ACR+H N +
Sbjct: 389 MYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTE 448

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G  A + +L+ EPD  A Y+LLSN+ A   +W++  ++RK M +  + K  G S+IE  
Sbjct: 449 LGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 508

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +HRF   + SHPQ  +I   L  +  K+K  GY+P+T  V+ D++EE+KE  +  HSE
Sbjct: 509 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 568

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           K+A+AFGLI++   + IRI KNLR+CGDCH A K +S    REI+VRD+ RFH  K G C
Sbjct: 569 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 628

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 629 SCNDYW 634



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 197/404 (48%), Gaps = 39/404 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           +SS+L+       L    Q+H +++  GL   +     L+  +A       +  SR +F 
Sbjct: 59  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 118

Query: 67  QIDNPNIFIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           Q+   N+  W  ++  Y++S +  +EA+ L+  M+S G + PN+F+F  VL +C  LS  
Sbjct: 119 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 177

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G Q++ + +K G+     + N+LI  Y+  G + +A K F+    ++LVSYN +++GY
Sbjct: 178 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 237

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +   A  LF ++ D+ I   AFTF ++ S    +     G+Q H  + K  G   S
Sbjct: 238 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK--GGYKS 295

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N  +  A+I+MY++CG +  A +VF+ M   ++  +W+SMI+G+ + G   RA ++F   
Sbjct: 296 NQCICNALISMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFH-- 352

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG- 364
                                        KM   G  P+E+T VAVL AC  +G +  G 
Sbjct: 353 -----------------------------KMLETGTKPNEITYVAVLSACSHVGMISEGQ 383

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           K  +  Y E+ +  R +     ++D+  + G +  A+     +P
Sbjct: 384 KHFNSMYKEHGIVPR-MEHYACMVDLLGRSGLLVEAMEFINSMP 426



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 188/369 (50%), Gaps = 38/369 (10%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A+KVF+    R+LV++  +I  +AQ+     A+ LF  M+ S   PD FT+ ++ SACTE
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L    +GKQ H+ V + LG +  ++ +  ++++MYAKC                      
Sbjct: 69  LGLLALGKQLHSRVIR-LG-LALDVCVGCSLVDMYAKCAA-------------------- 106

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGI 341
                    +G ++ +R++F+QM + +++SWTA+I+ Y+Q G    +A+ELF KM S  I
Sbjct: 107 ---------DGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 157

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+  +  +VL+AC  L     G++++   ++  +   N  +  ++I MYA+ G ++ A 
Sbjct: 158 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDAR 216

Query: 402 SVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             F  +  KNL +   +N+I+ G A++   E +  +F E+   G+     TF ++L   +
Sbjct: 217 KAFDILFEKNLVS---YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 273

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             G + +G+Q    +L  G K        ++ + +R G ++ A+ +   M  D N + W 
Sbjct: 274 SIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 332

Query: 521 ALLAACRLH 529
           +++     H
Sbjct: 333 SMITGFAKH 341



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 9/297 (3%)

Query: 8   HSSLLALLESCKSLKQAL---QIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRI 63
           H S  ++L++C +L       Q++   V  G+   +   + LIS +A SG    +  +R 
Sbjct: 161 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG---RMEDARK 217

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N+  +N ++ GY+++   +EA +L+  +   GI   + FTF  +L+  A + 
Sbjct: 218 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIG 276

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G QIH  ++K G + +  I NALI  YS  G I  A +VF     R+++S+ ++I 
Sbjct: 277 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 336

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+A+      AL +F KM ++  +P+  T+VA+ SAC+ +     G++    +YK  G V
Sbjct: 337 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 396

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              M     ++++  + GL+  A    ++M +      W +++      G  E  R 
Sbjct: 397 -PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 452


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/530 (40%), Positives = 338/530 (63%), Gaps = 12/530 (2%)

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           ++ +M+  C+ PD  TF  +  +        +G++ HA +   L  +  +  ++T+++NM
Sbjct: 48  VYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQIL--LFGLDKDPFVRTSLLNM 105

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           Y+ CG ++ A R+F    +SK   AW+S+++ Y + G I  AR+LFD+M +R+++SW+ +
Sbjct: 106 YSSCGDLSSALRIFDE-SVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCL 164

Query: 317 ISGYSQVGGFSQALELFGKME-----SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           I+GY   G + +AL+LF +M+      + + P++ TM  VL AC  LGAL+ GK +H  Y
Sbjct: 165 INGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHS-Y 223

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           I+      +I L TA+IDMYAKCGS++ A  VF  +    K V  ++++I  LA +GL +
Sbjct: 224 IDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK-KDVKAYSAMICCLAMYGLTD 282

Query: 432 TSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
               VF EM     + P+ VTFV +L AC H GL+ +GK +F+ M   +GI P ++HYGC
Sbjct: 283 ECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGC 342

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDL  R G + EA   I SMP + + +IW +LL+  R+  + K  E A ++L++L+P +
Sbjct: 343 MVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMN 402

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YVLLSN+ A+T RW E +++R  M+  GI+K PG SY+E  G +H F+   +S  ++
Sbjct: 403 SGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQES 462

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           + I  ML+++  +L+ AGYV +T +V+ D++E++KE  +SYHSEKLA+AF L+ +R    
Sbjct: 463 ERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTP 522

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +RI KNLRICGDCHL  K++S+++ REI+VRD  RFH F  G+CSC DFW
Sbjct: 523 VRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 174/389 (44%), Gaps = 73/389 (18%)

Query: 74  FIWNTLMRGYSRSDSPQE---ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           F+WN ++R    + SP +    + +Y  M     VSP+  TFPF+L S         G +
Sbjct: 24  FVWNIIIRAIVHNVSPPQRHSPISVYFRM-RHHCVSPDFHTFPFLLPSFHNPIHLPLGQR 82

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYS----------IF---------------------GY 159
            H  I+ FGL+ D F+R +L++ YS          IF                     G 
Sbjct: 83  THAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGL 142

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ-----DSCIQPDAFTFV 214
           IN+A K+F+    R+++S++ LINGY    +   AL LFR+MQ     +  + P+ FT  
Sbjct: 143 INHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMS 202

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
            + SAC  L     GK  H+ + K    V  +++L TA+I+MYAKCG +  A+RVF  +G
Sbjct: 203 TVLSACGRLGALEQGKWVHSYIDKY--GVEIDIVLGTALIDMYAKCGSLERAKRVFDALG 260

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
             K   A+S+MI      G  +   Q+F +M   +                         
Sbjct: 261 SKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSN------------------------- 295

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
                 I+P+ VT V +L ACV  G ++ GK   +   E      +I     ++D+Y + 
Sbjct: 296 -----NINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRS 350

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G I  A S    +P     V ++ S++SG
Sbjct: 351 GLIKEAESFIASMPME-PDVLIWGSLLSG 378



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 168/342 (49%), Gaps = 16/342 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +SLL +  SC  L  AL+I  + V   L    + + +++ +A +G  N    +R LF ++
Sbjct: 100 TSLLNMYSSCGDLSSALRIFDESVSKDLP---AWNSVVNAYAKAGLIN---HARKLFDEM 153

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSM----LSKGIVSPNNFTFPFVLNSCARLSS 124
              N+  W+ L+ GY      +EAL L+  M     ++  VSPN FT   VL++C RL +
Sbjct: 154 PERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGA 213

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLIN 183
            + G  +H +I K+G+E D+ +  ALI  Y+  G +  A +VF+     +D+ +Y+ +I 
Sbjct: 214 LEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMIC 273

Query: 184 GYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             A          +F +M  S  I P++ TFV +  AC        GK +  ++ +  G 
Sbjct: 274 CLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFG- 332

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERAR 299
           +  ++     ++++Y + GL+  AE   ++M M      W S++SG    G I   E A 
Sbjct: 333 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 392

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +   ++D  +  ++  + + Y++ G + +   +  +ME  GI
Sbjct: 393 KRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGI 434


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/659 (34%), Positives = 357/659 (54%), Gaps = 45/659 (6%)

Query: 65   FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            F + +  N+ +WN ++  Y   D  + +  ++  M  + IV PN +T+P +L +C RL  
Sbjct: 447  FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIRLGD 505

Query: 125  FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             + G QIH  IIK   + + ++ + LI  Y+  G ++ A  +      +D+VS+ T+I G
Sbjct: 506  LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565

Query: 185  YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            Y Q      AL  FR+M D  I+ D        SAC  L   + G+Q HA       CV 
Sbjct: 566  YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA-----QACVS 620

Query: 245  ---SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
               S++  + A++ +Y++C                                GKIE +   
Sbjct: 621  GFSSDLPFQNALVTLYSRC--------------------------------GKIEESYLA 648

Query: 302  FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
            F+Q +  D ++W A++SG+ Q G   +AL +F +M   GI  +  T  + ++A      +
Sbjct: 649  FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708

Query: 362  DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
              GK++H   I    +     +  A+I MYAKCGSI  A   F ++  + K    +N+II
Sbjct: 709  KQGKQVHA-VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEV--STKNEVSWNAII 765

Query: 422  SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
            +  ++HG G  ++  F +M    ++P+ VT V VL ACSH GLV++G  +FESM   YG+
Sbjct: 766  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 825

Query: 481  KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
             P+ EHY C+VD+L R G L  A   IQ MP   ++++WR LL+AC +H+N +IGE A  
Sbjct: 826  SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 885

Query: 541  KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
             LL+LEP+  A YVLLSN+ A + +W+     R+ M + G++K PG S+IE   ++H F 
Sbjct: 886  HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 945

Query: 601  ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
               ++HP   EI    +D+T +    GYV +   ++ ++  E+K+ ++  HSEKLA++FG
Sbjct: 946  VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFG 1005

Query: 661  LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            L++  +   I + KNLR+C DCH   K +S++  REI+VRDA RFH F+ G CSC D+W
Sbjct: 1006 LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 252/519 (48%), Gaps = 49/519 (9%)

Query: 13  ALLESCKSLKQAL----QIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFR-SRILFS 66
            +LE+C+    A     QIH +I++ GL +  +  + LI  ++    +NG    +R +F 
Sbjct: 191 GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYS----RNGFVDLARRVFD 246

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   +   W  ++ G S+++   EA+ L+  M   GI+ P  + F  VL++C ++ S +
Sbjct: 247 GLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLE 305

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H  ++K G   D ++ NAL+  Y   G + +A  +F     RD V+YNTLING +
Sbjct: 306 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLS 365

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+ LF++M    ++PD+ T  ++  AC+       G+Q HA   K LG   SN
Sbjct: 366 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK-LG-FASN 423

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             ++ A++N+YAKC                                  IE A   F + +
Sbjct: 424 NKIEGALLNLYAKC--------------------------------ADIETALDYFLETE 451

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             ++V W  M+  Y  +     +  +F +M+   I P++ T  ++L+ C+ LG L+ G++
Sbjct: 452 VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 511

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H Q I+   F  N ++ + +IDMYAK G +DTA  +  +     K V  + ++I+G  Q
Sbjct: 512 IHSQIIK-TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--KDVVSWTTMIAGYTQ 568

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
           +   + ++  FR+M   G++ D V     + AC+    ++EG+Q        G    +  
Sbjct: 569 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 628

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +V L +R G+++E+Y L        +++ W AL++ 
Sbjct: 629 QNALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSG 666



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 220/467 (47%), Gaps = 55/467 (11%)

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SFKSGCQIHCHIIKFGLEF 142
           S  +S QE  +   S+ ++GI  PN+ T  ++L  C + + S   G ++H  I+K GL+ 
Sbjct: 62  SEDESFQEKRI--DSVENRGI-RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDS 118

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           +  +   L  FY   G +  A KVF+    R + ++N +I   A          LF +M 
Sbjct: 119 NGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMV 178

Query: 203 DSCIQPDAFTFVAMFSACTELNDP-RIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKC 260
              + P+  TF  +  AC   +    + +Q HA ++Y+ L     + ++   +I++Y++ 
Sbjct: 179 SENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGL---RDSTVVCNPLIDLYSRN 235

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +++A RVF  + + K  ++W +MISG ++  + E                        
Sbjct: 236 GFVDLARRVFDGLRL-KDHSSWVAMISGLSK-NECE------------------------ 269

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                 ++A+ LF  M  LGI P      +VL AC  + +L+ G++LH   ++ + F  +
Sbjct: 270 ------AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK-LGFSSD 322

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
            ++  A++ +Y   G++ +A  +F  + +  +    +N++I+GL+Q G GE ++ +F+ M
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQ--RDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
            L GL+PD  T  +++ ACS  G +  G+Q        G     +  G +++L A+   +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440

Query: 501 DEAYGLIQSMPYDANSVIWRALLAAC----------RLHRNAKIGEI 537
           + A         + N V+W  +L A           R+ R  +I EI
Sbjct: 441 ETALDYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 486



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 11/281 (3%)

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +G+  +      +   Y  +G +  A ++FD+M +R + +W  MI   +      +   L
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGL 173

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           F +M S  + P+E T   VL AC G   A D  +++H + +   +    + +   +ID+Y
Sbjct: 174 FVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTV-VCNPLIDLY 232

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           ++ G +D A  VF  +   LK  S + ++ISGL+++     +I +F +M ++G+ P    
Sbjct: 233 SRNGFVDLARRVFDGL--RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 290

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F +VL AC     +E G+Q    +L  G          +V L    G L  A  +  +M 
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350

Query: 512 YDANSVIWRAL---LAACRLHRNAKIGEIAGQKLLD-LEPD 548
              ++V +  L   L+ C     A   E+  +  LD LEPD
Sbjct: 351 -QRDAVTYNTLINGLSQCGYGEKAM--ELFKRMHLDGLEPD 388


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/666 (34%), Positives = 376/666 (56%), Gaps = 53/666 (7%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W  ++  +++    ++A+ L+  M   G V P+ FT+  VL++C  L 
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELG 65

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFY---SIFGYINNAHKVFEGSLARDLVSYNT 180
               G Q+H  +I+ GL  D+ +  +L+  Y   +  G ++++ KVFE     +++S+  
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 181 LINGYAQVKEPC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           +I  YAQ  E C   A+ LF KM    I+P+ F+F ++  AC  L+DP  G+Q ++   K
Sbjct: 126 IITAYAQSGE-CDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 184

Query: 239 ----NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
               ++ CVG+++      I+MYA+ G M  A + F  +   K+  ++++++ GY +  K
Sbjct: 185 LGIASVNCVGNSL------ISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYAKNLK 237

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            E                               +A  LF ++   GI     T  ++L  
Sbjct: 238 SE-------------------------------EAFLLFNEIADTGIGISAFTFASLLSG 266

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              +GA+  G+++H + ++   +  N  +  A+I MY++CG+I+ A  VF ++    + V
Sbjct: 267 AASIGAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEMED--RNV 323

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             + S+I+G A+HG    ++ +F +M   G KP+ +T+V VL ACSH G++ EG++ F S
Sbjct: 324 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 383

Query: 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   +GI P+MEHY CMVDLL R G L EA   I SMP  A++++WR LL ACR+H N +
Sbjct: 384 MYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTE 443

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G  A + +L+ EPD  A Y+LLSN+ A   +W++  ++RK M +  + K  G S+IE  
Sbjct: 444 LGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 503

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +HRF   + SHPQ  +I   L  +  K+K  GY+P+T  V+ D++EE+KE  +  HSE
Sbjct: 504 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 563

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           K+A+AFGLI++   + IRI KNLR+CGDCH A K +S    REI+VRD+ RFH  K G C
Sbjct: 564 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 623

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 624 SCNDYW 629



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 197/404 (48%), Gaps = 39/404 (9%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           +SS+L+       L    Q+H +++  GL   +     L+  +A       +  SR +F 
Sbjct: 54  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 113

Query: 67  QIDNPNIFIWNTLMRGYSRS-DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           Q+   N+  W  ++  Y++S +  +EA+ L+  M+S G + PN+F+F  VL +C  LS  
Sbjct: 114 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 172

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G Q++ + +K G+     + N+LI  Y+  G + +A K F+    ++LVSYN +++GY
Sbjct: 173 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 232

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A+  +   A  LF ++ D+ I   AFTF ++ S    +     G+Q H  + K  G   S
Sbjct: 233 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK--GGYKS 290

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           N  +  A+I+MY++CG +  A +VF+ M   ++  +W+SMI+G+ + G   RA ++F   
Sbjct: 291 NQCICNALISMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFH-- 347

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG- 364
                                        KM   G  P+E+T VAVL AC  +G +  G 
Sbjct: 348 -----------------------------KMLETGTKPNEITYVAVLSACSHVGMISEGQ 378

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           K  +  Y E+ +  R +     ++D+  + G +  A+     +P
Sbjct: 379 KHFNSMYKEHGIVPR-MEHYACMVDLLGRSGLLVEAMEFINSMP 421



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 188/369 (50%), Gaps = 38/369 (10%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A+KVF+    R+LV++  +I  +AQ+     A+ LF  M+ S   PD FT+ ++ SACTE
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L    +GKQ H+ V + LG +  ++ +  ++++MYAKC                      
Sbjct: 64  LGLLALGKQLHSRVIR-LG-LALDVCVGCSLVDMYAKCAA-------------------- 101

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGI 341
                    +G ++ +R++F+QM + +++SWTA+I+ Y+Q G    +A+ELF KM S  I
Sbjct: 102 ---------DGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 152

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P+  +  +VL+AC  L     G++++   ++  +   N  +  ++I MYA+ G ++ A 
Sbjct: 153 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDAR 211

Query: 402 SVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             F  +  KNL +   +N+I+ G A++   E +  +F E+   G+     TF ++L   +
Sbjct: 212 KAFDILFEKNLVS---YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 268

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             G + +G+Q    +L  G K        ++ + +R G ++ A+ +   M  D N + W 
Sbjct: 269 SIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 327

Query: 521 ALLAACRLH 529
           +++     H
Sbjct: 328 SMITGFAKH 336



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 9/297 (3%)

Query: 8   HSSLLALLESCKSLKQAL---QIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRI 63
           H S  ++L++C +L       Q++   V  G+   +   + LIS +A SG    +  +R 
Sbjct: 156 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG---RMEDARK 212

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N+  +N ++ GY+++   +EA +L+  +   GI   + FTF  +L+  A + 
Sbjct: 213 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI-GISAFTFASLLSGAASIG 271

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G QIH  ++K G + +  I NALI  YS  G I  A +VF     R+++S+ ++I 
Sbjct: 272 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 331

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+A+      AL +F KM ++  +P+  T+VA+ SAC+ +     G++    +YK  G V
Sbjct: 332 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 391

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              M     ++++  + GL+  A    ++M +      W +++      G  E  R 
Sbjct: 392 -PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 447


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/704 (34%), Positives = 391/704 (55%), Gaps = 51/704 (7%)

Query: 46  ISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIV 105
           I+  A +G   G   +R  F  +       +N L+ GY R+  P  AL L+  M S+ + 
Sbjct: 24  IAHLARAGNIEG---ARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 106 SPNNFTFPFVL------NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI-------- 151
           S N       L      ++ A L+S          ++ F      ++R+ L+        
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIP----FPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 152 ------HF-YSIF-------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                 H  Y++        G +N A ++F+    RD+V++  +++GY Q      A  L
Sbjct: 137 QMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARAL 196

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F +M       +  ++ AM S   +  +  + ++   V+ +       N +  TA++  Y
Sbjct: 197 FDEMPKR----NVVSWTAMISGYAQNGEVNLARKLFEVMPER------NEVSWTAMLVGY 246

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            + G +  A  +F+ M      AA ++M+ G+ + G ++ A+ +F++M +RD  +W+AMI
Sbjct: 247 IQAGHVEDAAELFNAMP-EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMI 305

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
             Y Q     +AL  F +M   G+ P+  +++++L  C  L  LD+G+ +H   +    F
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSF 364

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++F  +A+I MY KCG++D A  VF+      K + ++NS+I+G AQHGLGE ++ +F
Sbjct: 365 DMDVFAVSALITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHGLGEQALGIF 422

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLAR 496
            +M L G+ PDG+T++  L ACS+ G V+EG++ F SM +N  I+P  EHY CMVDLL R
Sbjct: 423 HDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR 482

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G ++EA+ LI++MP + ++VIW AL+ ACR+HRNA+I E A +KLL+LEP +   YVLL
Sbjct: 483 SGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLL 542

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK-SHPQTKEIELM 615
           S++     RWE+A ++RK +    + K PG S+IE++  +H F +    +HP+   I  +
Sbjct: 543 SHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRI 602

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+ +   L  +GY  +   V+ D+DEE+K   + YHSE+ A+A+GL+       IR+ KN
Sbjct: 603 LEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKN 662

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+CGDCH A KL+++I  REI++RDA RFH FK G CSC D+W
Sbjct: 663 LRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 210/473 (44%), Gaps = 61/473 (12%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           NA I   +  G I  A   FE    R   SYN L+ GY + + P  AL LFR+M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 208 PDAFTFVAMFSACTELND--PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
            D  ++ A+ S  +      P       ++ +        +++  T+++  Y + GL+  
Sbjct: 78  -DLASYNALISGLSLRRQTLPDAAAALASIPFP------PSVVSFTSLLRGYVRHGLLAD 130

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A R+F  M   ++  +++ ++ G    G++  AR+LFD+M  RD+V+WTAM+SGY Q G 
Sbjct: 131 AIRLFQQMP-ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGR 189

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
            ++A  LF +M    +    V+  A++      G ++  ++L +   E     RN    T
Sbjct: 190 ITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPE-----RNEVSWT 240

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET------------- 432
           A++  Y + G ++ A  +F  +P++   V+  N+++ G  Q G+ +              
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEH--PVAACNAMMVGFGQRGMVDAAKTVFEKMCERDD 298

Query: 433 ------------------SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
                             +++ FREM   G++P+  + +++L  C+   +++ G++   +
Sbjct: 299 GTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAA 358

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLH--RN 531
           ML       +     ++ +  + G LD+A  +  +  P D   V+W +++     H    
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDI--VMWNSMITGYAQHGLGE 416

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
             +G     +L  + PD G  Y+      + T + +E R++   M  +   +P
Sbjct: 417 QALGIFHDMRLAGMSPD-GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 176/433 (40%), Gaps = 64/433 (14%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           +H+S + L+     +G  N    +R LF ++ + ++  W  ++ GY ++    EA  L+ 
Sbjct: 142 NHVSYTVLLGGLLDAGRVN---EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSS---------------------FKSG-CQIHCHI 135
            M  + +VS       +  N    L+                       ++G  +    +
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAEL 258

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
                E  +   NA++  +   G ++ A  VFE    RD  +++ +I  Y Q +    AL
Sbjct: 259 FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVI 254
             FR+M    ++P+  + +++ + C  L     G++ HA +   L C    ++   +A+I
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM---LRCSFDMDVFAVSALI 375

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
            MY KCG ++ A+RVF T    K    W+SMI+GY + G  E                  
Sbjct: 376 TMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMITGYAQHGLGE------------------ 416

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                        QAL +F  M   G+ PD +T +  L AC   G +  G+ +      N
Sbjct: 417 -------------QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                     + ++D+  + G ++ A  +   +P     V ++ +++     H   E  I
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAV-IWGALMGACRMHRNAE--I 520

Query: 435 AVFREMELMGLKP 447
           A F   +L+ L+P
Sbjct: 521 AEFAAKKLLELEP 533


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/732 (33%), Positives = 404/732 (55%), Gaps = 48/732 (6%)

Query: 10  SLLALLESCKSLKQALQI----HGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRSR 62
           +L+++L +C  L + L++    H   + +G    +   + + L+S +A  G  +    ++
Sbjct: 164 TLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDD---AQ 220

Query: 63  ILFSQIDNPN-----IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           +LF  +D  +     +  WNT++    +S    EA+ +   M+++G V P+  TF   L 
Sbjct: 221 MLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARG-VRPDGITFASALP 279

Query: 118 SCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA--RD 174
           +C++L     G ++H +++K   L  + F+ +AL+  Y+    +  A +VF+      R 
Sbjct: 280 ACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQ 339

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQ-F 232
           L  +N ++ GYAQ      AL LF +M+ ++ + P   T   +  AC   ++   GK+  
Sbjct: 340 LGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACAR-SETFAGKEAV 398

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H  V K    +  N  ++ A++++YA+ G M  A  +F+ +   +   +W+++I+G   +
Sbjct: 399 HGYVLKR--GMADNPFVQNALMDLYARLGDMEAARWIFAAI-EPRDVVSWNTLITGCVVQ 455

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG--KMESLGIHPDEVTMVA 350
           G I  A QL  +M Q+               G F+ A    G    +   + P+ VT++ 
Sbjct: 456 GHIHDAFQLVREMQQQ---------------GRFTDATTEDGIAGTDEEPVVPNNVTLMT 500

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +L  C  L A   GK +H  Y        +I + +A++DMYAKCG +  + +VF ++PK 
Sbjct: 501 LLPGCAMLAAPAKGKEIHG-YAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPK- 558

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGK 469
            + V  +N +I     HGLG+ +IA+F  M +    KP+ VTF+  L ACSH G+V+ G 
Sbjct: 559 -RNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGM 617

Query: 470 QFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACR 527
           + F SM  N+G++P  + + C VD+L R GRLDEAY +I SM P +     W + L ACR
Sbjct: 618 ELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACR 677

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           LHRN  +GEIA ++L  LEPD  +HYVLL N+ +    WE++ +VR  M   G+ K PG 
Sbjct: 678 LHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGC 737

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV 647
           S+IE +G +HRF+A + +HP++  +   +  +  ++++ GY P+T  V+ D++E EK  +
Sbjct: 738 SWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAI 797

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           + YHSEKLA+AFGL+ +    TIR+ KNLR+C DCH A K +S +  REI++RD  RFH 
Sbjct: 798 LRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHH 857

Query: 708 FKKGNCSCMDFW 719
           F  G CSC D+W
Sbjct: 858 FVDGACSCGDYW 869



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 136/560 (24%), Positives = 251/560 (44%), Gaps = 78/560 (13%)

Query: 6   LEHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHIS---SSQLISFFALSGCKNGLF 59
           L+H +L    +S  +L+  +    IHG  +   L H  +   ++ L++ +A  G    L 
Sbjct: 57  LDHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCG---DLT 113

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP-NNFTFPFVLNS 118
            +  LF+ + + +   +N+L+           AL     ML +G   P ++FT   VL +
Sbjct: 114 AALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG--HPLSSFTLVSVLLA 171

Query: 119 CARLS-SFKSGCQIHCHIIKFG-LEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARD- 174
           C+ L+   + G + H   +K G L+ D  F  NAL+  Y+  G +++A  +F      D 
Sbjct: 172 CSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDS 231

Query: 175 ----LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
               +V++NT+++   Q      A+ +   M    ++PD  TF +   AC++L    +G+
Sbjct: 232 PGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGR 291

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSSMISGY 289
           + HA V K+   + +N  + +A+++MYA    + +A RVF  + G  +    W++M+ GY
Sbjct: 292 EMHAYVLKD-SDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGY 350

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTM 348
            + G           MD+                    +ALELF +ME+  G+ P E T+
Sbjct: 351 AQAG-----------MDE--------------------EALELFARMEAEAGVVPSETTI 379

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI- 407
             VL AC        GK     Y+       N F+  A++D+YA+ G ++ A  +F  I 
Sbjct: 380 AGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIE 438

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG------------------LKPDG 449
           P+++ +   +N++I+G    G    +  + REM+  G                  + P+ 
Sbjct: 439 PRDVVS---WNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNN 495

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           VT +T+L  C+      +GK+     + + +   +     +VD+ A+ G L  +  +   
Sbjct: 496 VTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDR 555

Query: 510 MPYDANSVIWRALLAACRLH 529
           +P   N + W  L+ A  +H
Sbjct: 556 LP-KRNVITWNVLIMAYGMH 574



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 4   LVLEHSSLLALLESCKSLK---QALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           +V  + +L+ LL  C  L    +  +IHG  +   L+  I+  S L+  +A  GC   L 
Sbjct: 491 VVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGC---LA 547

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            SR +F ++   N+  WN L+  Y       EA+ L+  M+      PN  TF   L +C
Sbjct: 548 LSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAAC 607

Query: 120 ARLSSFKSGCQI 131
           +       G ++
Sbjct: 608 SHSGMVDRGMEL 619


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/638 (34%), Positives = 355/638 (55%), Gaps = 52/638 (8%)

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y + D+  ++  ++T M  +GIV PN FT+P +L +C  L +   G QIH  ++K G +F
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIV-PNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF 471

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           ++++ + LI  Y+  G +++A K+F      D+VS+  +I GY Q  +   AL LF++MQ
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           D  I+ D   F +  SAC  +     G+Q HA     L     ++ +  A++++YA+C  
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHA--QSCLSGYSDDLSIGNALVSLYARC-- 587

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                                         GK+  A   FDQ+  +D VSW +++SG++Q
Sbjct: 588 ------------------------------GKVREAYAAFDQIYAKDNVSWNSLVSGFAQ 617

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G F +AL +F +M   G+  +  T  + + A   +  +  GK++H   I    +     
Sbjct: 618 SGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGM-IRKTGYDSETE 676

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           ++ A+I +YAKCG+ID                  +NS+I+G +QHG G  ++ +F +M+ 
Sbjct: 677 VSNALITLYAKCGTIDDIS---------------WNSMITGYSQHGCGFEALKLFEDMKQ 721

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
           + + P+ VTFV VL ACSH GLV+EG  +F SM   + + P+ EHY C+VDLL R G L 
Sbjct: 722 LDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLS 781

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
            A   ++ MP   ++++WR LL+AC +H+N  IGE A   LL+LEP   A YVL+SNM A
Sbjct: 782 RAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYA 841

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            + +W+   + R++M D G++K PG S++E + ++H F A  ++HP+   I   L+ +  
Sbjct: 842 VSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDF 901

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           +    GYVP    ++ D +  +K+     HSE+LA+AFGL++  S   + + KNLR+C D
Sbjct: 902 RAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCED 961

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH   K +S+I  R I+VRD+ RFH FK G+CSC D+W
Sbjct: 962 CHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/538 (26%), Positives = 259/538 (48%), Gaps = 78/538 (14%)

Query: 20  SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS-RILFSQIDNPNIFIWNT 78
           S +   QIH + + SG     SS+ + +       KNG   S + +F  +   +   W  
Sbjct: 179 SFRFVEQIHAKTITSGFE---SSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVA 235

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ G S++   +EA++L+  +               VL++C ++  F+ G Q+H  ++K 
Sbjct: 236 MISGLSQNGYEEEAMLLFCQI---------------VLSACTKVEFFEFGKQLHGLVLKQ 280

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G   + ++ NAL+  YS  G +++A ++F     RD VSYN+LI+G AQ      AL LF
Sbjct: 281 GFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALF 340

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           +KM   C +PD  T  ++ SAC  +     GKQFH+   K    + S+++++ +++++Y 
Sbjct: 341 KKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIK--AGMTSDIVVEGSLLDLYV 398

Query: 259 KCGLMNMAERVFSTMG----MSKSTAAWSSM----------------------------- 285
           KC  +  A   F   G    ++KS   ++ M                             
Sbjct: 399 KCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGE 458

Query: 286 ---------------------ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                                I  Y + GK++ A ++F ++ + D+VSWTAMI+GY+Q  
Sbjct: 459 QIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHD 518

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
            F++AL LF +M+  GI  D +   + + AC G+ ALD G+++H Q   +  +  ++ + 
Sbjct: 519 KFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLS-GYSDDLSIG 577

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A++ +YA+CG +  A + F +I    K    +NS++SG AQ G  E ++ +F +M   G
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYA--KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAG 635

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           L+ +  TF + + A ++   V  GKQ    +   G   + E    ++ L A+ G +D+
Sbjct: 636 LEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD 693



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 208/469 (44%), Gaps = 73/469 (15%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA-RL 122
           +F ++   ++  WN +   +           L+  ML+K  V  +   F  VL  C+   
Sbjct: 119 VFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKN-VEFDERIFAVVLRGCSGNA 177

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            SF+   QIH   I  G E   FI N LI  Y   G++++A KVFE   ARD VS+  +I
Sbjct: 178 VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMI 237

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           +G +Q      A+ LF ++              + SACT++     GKQ H +V K    
Sbjct: 238 SGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQ--- 280

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
                                          G S  T   +++++ Y+R G +  A Q+F
Sbjct: 281 -------------------------------GFSSETYVCNALVTLYSRSGNLSSAEQIF 309

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
             M QRD VS+ ++ISG +Q G  ++AL LF KM      PD VT+ ++L AC  +GAL 
Sbjct: 310 HCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALP 369

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF--YKIPKNLKTVSLFNSI 420
            GK+ H  Y        +I +  +++D+Y KC  I TA   F  Y    NL         
Sbjct: 370 NGKQFHS-YAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNK------- 421

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
                       S  +F +M++ G+ P+  T+ ++L  C+  G  + G+Q    +L  G 
Sbjct: 422 ------------SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGF 469

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +  +     ++D+ A+ G+LD A  + + +  + + V W A++A    H
Sbjct: 470 QFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQH 517



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 179/410 (43%), Gaps = 71/410 (17%)

Query: 96  YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
           Y  ++ +  V  N+ TF ++L  C    SF  G +                   LI FY 
Sbjct: 68  YLHLMEQHGVRANSQTFLWLLEGCLNSRSFYDGLK-------------------LIDFYL 108

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
            FG +N A  VF+    R L  +N + N +   +       LFR+M    ++ D   F  
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 216 MFSACT-ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           +   C+      R  +Q HA               KT                    T G
Sbjct: 169 VLRGCSGNAVSFRFVEQIHA---------------KTI-------------------TSG 194

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
              ST   + +I  Y + G +  A+++F+ +  RD VSW AMISG SQ G   +A+ LF 
Sbjct: 195 FESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFC 254

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           ++              VL AC  +   +FGK+LH   ++   F    ++  A++ +Y++ 
Sbjct: 255 QI--------------VLSACTKVEFFEFGKQLHGLVLKQG-FSSETYVCNALVTLYSRS 299

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G++ +A  +F+ + +  +    +NS+ISGLAQ G    ++A+F++M L   KPD VT  +
Sbjct: 300 GNLSSAEQIFHCMSQRDRVS--YNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVAS 357

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           +L AC+  G +  GKQF    +  G+   +   G ++DL  +   +  A+
Sbjct: 358 LLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAH 407



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 18/227 (7%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I  Y   G +  A  +FD+M  R L  W  + + +       +   LF +M +  +  D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 345 EVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           E     VLR C G   +  F +++H + I +  F  + F+   +ID+Y K G + +A  V
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSG-FESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  + K   +VS + ++ISGL+Q+G  E ++ +F ++              VL AC+   
Sbjct: 222 FENL-KARDSVS-WVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVE 265

Query: 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
             E GKQ    +L  G   +      +V L +R G L  A  +   M
Sbjct: 266 FFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCM 312



 Score = 43.1 bits (100), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 54/249 (21%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           QIHG I  +G +     S+ LI+ +A  G              ID+ +   WN+++ GYS
Sbjct: 661 QIHGMIRKTGYDSETEVSNALITLYAKCG-------------TIDDIS---WNSMITGYS 704

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           +     EAL L+  M    ++ PN+ TF  VL++C+           H  ++  G+ +  
Sbjct: 705 QHGCGFEALKLFEDMKQLDVL-PNHVTFVGVLSACS-----------HVGLVDEGISY-- 750

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
                   F S+    N   K    +   DL+  + L++   +  E  P           
Sbjct: 751 --------FRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMP----------- 791

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            IQPDA  +  + SAC    +  IG +F A     L    S   +   V NMYA  G  +
Sbjct: 792 -IQPDAMVWRTLLSACNVHKNIDIG-EFAASHLLELEPKDSATYV--LVSNMYAVSGKWD 847

Query: 265 MAERVFSTM 273
             +R    M
Sbjct: 848 CRDRTRQMM 856


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 375/663 (56%), Gaps = 45/663 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++  P+   +NTL+  Y+R    Q A  L+  M  +  +  + FT   ++ +C    
Sbjct: 96  LFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM-REAFLDMDGFTLSGIITACGINV 154

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLI 182
                 Q+H   +  GL+  + + NALI  YS  G++  A ++F   S  RD VS+N+++
Sbjct: 155 GLIR--QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMV 212

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             Y Q +E   AL L+ +M    +  D FT  ++ +A T + D   G QFHA + K+   
Sbjct: 213 VAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKS--G 270

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              N  + + +I++Y+KCG                               G +   R++F
Sbjct: 271 YHQNSHVGSGLIDLYSKCG-------------------------------GCMLDCRKVF 299

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           D++   DLV W  MISGYS     S +ALE F +++ +G  PD+ ++V V+ AC  + + 
Sbjct: 300 DEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSP 359

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             G+++H   ++  +    I +  A+I MY+KCG++  A ++F  +P++  TVS +NS+I
Sbjct: 360 SQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEH-NTVS-YNSMI 417

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGI 480
           +G AQHG+G  S+ +F+ M  M   P  +TF++VL AC+H G VE+GK +F  M   +GI
Sbjct: 418 AGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGI 477

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           +P+  H+ CM+DLL R G+L EA  LI+++P+D     W ALL ACR+H N ++   A  
Sbjct: 478 EPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAAN 537

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           +LL L+P + A YV+L+N+ ++  R ++A  VRKLM D G++K PG S+IE N  +H F+
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFV 597

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD----EEEKETVVSYHSEKLA 656
           A    HP  K+I+  L++M  K+K  GY P         D    + E+E  + +HSEKLA
Sbjct: 598 AEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLA 657

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           ++FGL+++R  E I + KNLRIC DCH A K +SE+ +REI VRD+ RFH FK G CSC 
Sbjct: 658 VSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCG 717

Query: 717 DFW 719
            +W
Sbjct: 718 GYW 720



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 212/464 (45%), Gaps = 47/464 (10%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS--RILFSQIDNPNIFIWNTLMRG 82
           Q+H   V +GL+ ++S  + LI+ ++    KNG  +   RI     ++ +   WN+++  
Sbjct: 159 QLHALSVVTGLDSYVSVGNALITSYS----KNGFLKEARRIFHWLSEDRDEVSWNSMVVA 214

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y +     +AL LY  M  +G++  + FT   VL +   +     G Q H  +IK G   
Sbjct: 215 YMQHREGSKALELYLEMTVRGLIV-DIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQ 273

Query: 143 DLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC-PALWLFRK 200
           +  + + LI  YS   G + +  KVF+     DLV +NT+I+GY+  ++    AL  FR+
Sbjct: 274 NSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQ 333

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           +Q    +PD  + V + SAC+ ++ P  G+Q H +  K L    + + +  A+I MY+KC
Sbjct: 334 LQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALK-LDIPSNRISVNNALIAMYSKC 392

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +  A+ +F TM    +T +++SMI+GY + G                           
Sbjct: 393 GNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGM-------------------------- 425

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
               GF Q+L LF +M  +   P  +T ++VL AC   G ++ GK       +       
Sbjct: 426 ----GF-QSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE 480

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
               + +ID+  + G +  A  +   IP +      +++++     H  G   +A+    
Sbjct: 481 AGHFSCMIDLLGRAGKLSEAERLIETIPFD-PGFFXWSALLGACRIH--GNVELAIKAAN 537

Query: 441 ELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            L+ L P +   +V +    S  G +++     + M + G+K +
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKK 581



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 204/423 (48%), Gaps = 53/423 (12%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F  + + C RLS+ +     H H      + ++F  N LI  Y+   Y+  AH++F+   
Sbjct: 49  FLLLYSKCRRLSAARRVFD-HTH------DCNVFSFNTLISAYAKESYVEVAHQLFDEMP 101

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
             D VSYNTLI  YA+  +  PA  LF +M+++ +  D FT   + +AC  +N   I +Q
Sbjct: 102 QPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG-INVGLI-RQ 159

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT- 290
            HA+    +  + S + +  A+I  Y+K G +  A R+F  +   +   +W+SM+  Y  
Sbjct: 160 LHALSV--VTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQ 217

Query: 291 -REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            REG                                 S+ALEL+ +M   G+  D  T+ 
Sbjct: 218 HREG---------------------------------SKALELYLEMTVRGLIVDIFTLA 244

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS-IDTALSVFYKIP 408
           +VL A   +  L  G + H + I++  + +N  + + +ID+Y+KCG  +     VF +I 
Sbjct: 245 SVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS 303

Query: 409 KNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
                + L+N++ISG + +  L + ++  FR+++ +G +PD  + V V+ ACS+     +
Sbjct: 304 N--PDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQ 361

Query: 468 GKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G+Q     L   I   ++     ++ + ++ G L +A  L  +MP + N+V + +++A  
Sbjct: 362 GRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGY 420

Query: 527 RLH 529
             H
Sbjct: 421 AQH 423



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 163/340 (47%), Gaps = 12/340 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L    + + L   LQ H +++ SG   N H+ S  LI  +  S C   +   R +F 
Sbjct: 244 ASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSG-LIDLY--SKCGGCMLDCRKVFD 300

Query: 67  QIDNPNIFIWNTLMRGYS-RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +I NP++ +WNT++ GYS   D   EAL  +  +   G   P++ +   V+++C+ +SS 
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVG-HRPDDCSLVCVISACSNMSSP 359

Query: 126 KSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G Q+H   +K  +  + + + NALI  YS  G + +A  +F+     + VSYN++I G
Sbjct: 360 SQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAG 419

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ      +L LF++M +    P   TF+++ +AC        GK +  ++ +  G + 
Sbjct: 420 YAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFG-IE 478

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQL 301
                 + +I++  + G ++ AER+  T+        WS+++      G +E   +A   
Sbjct: 479 PEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANR 538

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             Q+D  +   +  + + YS  G    A  +   M   G+
Sbjct: 539 LLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGV 578


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 349/581 (60%), Gaps = 13/581 (2%)

Query: 3    RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
            R +L+   ++ L E+   ++   ++H  +V SGL N   + S++I  +AL   ++ L  +
Sbjct: 838  RKLLDQRKIVKLQEAV--MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALH--QSDLVSA 893

Query: 62   RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
              +F QI++P  F+WNTL+RG ++SD+P++A+V Y     KG+  P+N TFPFVL +CA+
Sbjct: 894  HKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGM-KPDNLTFPFVLKACAK 952

Query: 122  LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
              + K G Q+H H+IK G   D+F+ N+LI+ Y+  G +  A  VF   L +D+VS+N+L
Sbjct: 953  TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012

Query: 182  INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
            I GY+Q       L LF+ MQ   +Q D  T V + SACT L D  +      V Y    
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCM--VRYIEHN 1070

Query: 242  CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
             +  ++ L   +I+ Y + G +  AE+VFS M   K+T   ++MI+ Y + G +  A+++
Sbjct: 1071 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQM-KDKNTVTLNAMITAYAKGGNLVSAKKI 1129

Query: 302  FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
            FDQ+  +DL+SW++MI  YSQ   FS +LELF +M+   + PD V + +VL AC  LGAL
Sbjct: 1130 FDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGAL 1189

Query: 362  DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
            D GK +H  Y+       +  +  ++IDM+AKCG +  AL VF  + +  K    +NSII
Sbjct: 1190 DLGKWIH-DYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEE--KDTLSWNSII 1246

Query: 422  SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
             GLA +G  + ++ +F  M   G +P+ VTF+ VL AC++  LVEEG   FE M + + +
Sbjct: 1247 LGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNL 1306

Query: 481  KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            +PQM+HYGC+VD+L+R G+L++A   I  MP   + V+WR LL ACR H N  + E+A +
Sbjct: 1307 EPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATK 1366

Query: 541  KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
            KL +L+P + A  +LLSN+ A   RW +A  VR+   D+ +
Sbjct: 1367 KLSELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAV 1407



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 245/423 (57%), Gaps = 11/423 (2%)

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A KVF+ S A     +   +  Y+    P  AL LF+  +   +  D F F  +  AC 
Sbjct: 436 TALKVFDQSPA----PWRAFLKAYSHGPFPLEALHLFKHARQH-LADDTFVFTFVLKACA 490

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            L   R G Q HA+V +       +  + TA+IN+Y     +  A +VF  M + K+  +
Sbjct: 491 GLGWHRAGAQLHALVVQK--GFEFHAYVHTALINVYVMSRCLVEARKVFDEMPV-KNVVS 547

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           W+ MI+G+   G++E AR LFDQM  R++VSWT +I GY++   +++AL L   M + GI
Sbjct: 548 WNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGI 607

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
            P E+T++AV+ A   LG +  G+ L+  Y E      +  +  ++ID+YAK GS+  +L
Sbjct: 608 SPSEITVLAVIPAISNLGGILMGEMLNG-YCEKKGIMSDARVGNSLIDLYAKIGSVQNSL 666

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
            VF ++      VS + SIISG A HGL   ++ +F EM   G+KP+ +TF++V+ ACSH
Sbjct: 667 KVFDEMLDRRNLVS-WTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSH 725

Query: 462 GGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           GGLVE+G  FF+SM+  Y I P+++H+GC++D+L R GRL EA  +I+ +P + N  +WR
Sbjct: 726 GGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWR 785

Query: 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
            LL  C  +    +GE A + + DLE + G  + +LSN+L E  R+ +A Q RKL+D   
Sbjct: 786 ILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRK 845

Query: 581 IQK 583
           I K
Sbjct: 846 IVK 848



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 141/569 (24%), Positives = 258/569 (45%), Gaps = 79/569 (13%)

Query: 14   LLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGC-------------KN 56
            +L++C  L   +   Q+H  +V  G   H    + LI+ + +S C             KN
Sbjct: 485  VLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKN 544

Query: 57   ---------------GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
                            +  +R+LF Q+   N+  W  L+ GY+R+    EAL L   M++
Sbjct: 545  VVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMA 604

Query: 102  KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
             GI SP+  T   V+ + + L     G  ++ +  K G+  D  + N+LI  Y+  G + 
Sbjct: 605  GGI-SPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQ 663

Query: 162  NAHKVFEGSL-ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
            N+ KVF+  L  R+LVS+ ++I+G+A       AL LF +M+ + I+P+  TF+++ +AC
Sbjct: 664  NSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINAC 723

Query: 221  TELNDPRIGKQ-FHAVVY--------KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
            +       G   F ++VY        K+ GC          +I+M  + G +  AE++  
Sbjct: 724  SHGGLVEQGLAFFKSMVYEYNIDPEIKHFGC----------IIDMLGRAGRLCEAEQIIE 773

Query: 272  TMGMSKSTAAWSSMISGYTREGKI---ERARQLFDQMDQRDLVSWTAMISGYSQVGGFS- 327
             + M  +   W  ++   ++ G++   ERA ++   +++     +  + +  +++G FS 
Sbjct: 774  GLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSD 833

Query: 328  --QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
              QA +L  + + + +   E  M AV             K+LH   + + +     +  +
Sbjct: 834  AEQARKLLDQRKIVKLQ--EAVMEAV-------------KKLHAHLVVSGLHNCQ-YAMS 877

Query: 386  AVIDMYAKCGS-IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
             VI +YA   S + +A  VF +I     T  L+N+++ GLAQ    + +I  +++ +  G
Sbjct: 878  KVIRLYALHQSDLVSAHKVFKQIES--PTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKG 935

Query: 445  LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
            +KPD +TF  VL AC+     +EG+Q    ++  G    +     ++ L A  G L  A 
Sbjct: 936  MKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACAR 995

Query: 505  GLIQSMPYDANSVIWRALLAACRLHRNAK 533
             +   M    + V W +L+     H   K
Sbjct: 996  SVFNEM-LVKDVVSWNSLIGGYSQHNRLK 1023



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 190/444 (42%), Gaps = 76/444 (17%)

Query: 34  SGLNHH-ISSSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIWNTLMRGYSRSDSPQE 91
           SGL H  +S S      A +       R+ + +F Q   P    W   ++ YS    P E
Sbjct: 408 SGLRHQALSYSSTAPVPATARSSTPPSRTALKVFDQSPAP----WRAFLKAYSHGPFPLE 463

Query: 92  ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151
           AL L+    ++  ++ + F F FVL +CA L   ++G Q+H  +++ G EF  ++  ALI
Sbjct: 464 ALHLFKH--ARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALI 521

Query: 152 HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE-----------PC-------- 192
           + Y +   +  A KVF+    +++VS+N +I G+A   E           PC        
Sbjct: 522 NVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTG 581

Query: 193 ------------PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
                        AL L R M    I P   T +A+  A + L    +G+  +    K  
Sbjct: 582 LIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKK- 640

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + S+  +  ++I++YAK G +  + +VF  M   ++  +W+S+ISG+   G       
Sbjct: 641 -GIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGL------ 693

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                      +ALELF +M   GI P+ +T ++V+ AC   G 
Sbjct: 694 -------------------------SVEALELFAEMRRAGIKPNRITFLSVINACSHGGL 728

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G    +  +        I     +IDM  + G +  A  +   +P  +  V+++  +
Sbjct: 729 VEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEV-NVTVWRIL 787

Query: 421 ISGLAQHG---LGETSIAVFREME 441
           +   +++G   +GE +I +  ++E
Sbjct: 788 LGCCSKYGEVAMGERAIKMISDLE 811


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 386/720 (53%), Gaps = 50/720 (6%)

Query: 7   EHSSLLALLESCKSL---KQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRS 61
           ++ + + LL  C  L   K+  Q H QIV  G  LNH + ++ L S+F       GL  +
Sbjct: 139 DYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFK----TGGLDSA 194

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R LF ++   +   +N ++ GY+ +   +EA+ L+  M + G   P++FTF  V+++   
Sbjct: 195 RRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGF-KPSDFTFAAVISASVG 253

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L     G QIH  ++K     ++F+ NA + FYS    +N   K+F      D VSYN +
Sbjct: 254 LDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVI 313

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I  YA V +   ++ LF+++Q +      F F  M S      D ++G+Q HA V  ++ 
Sbjct: 314 ITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMA 373

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
               +  +  ++++MYAKCG                                K E A ++
Sbjct: 374 --DPDFRVSNSLVDMYAKCG--------------------------------KFEEADRI 399

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F ++  R  V WTAMIS   Q G     L+LF +M    +  D+ T   VL+A   L ++
Sbjct: 400 FLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASI 459

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             GK+LH   I +     N++   A++DMYA C SI  A+  F ++ +  + V  +N+++
Sbjct: 460 LLGKQLHSCVIRSGFM--NVYSGCALLDMYANCASIKDAIKTFEEMSE--RNVVTWNALL 515

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGI 480
           S  AQ+G G+ ++  F EM + G +PD V+F+ +L ACSH  LVEEG ++F  M   Y +
Sbjct: 516 SAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNL 575

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P+ EHY  MVD L R GR DEA  L+  MP++ + ++W ++L +CR+H+N  +   A  
Sbjct: 576 APKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAG 635

Query: 541 KLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           +L +++     A YV +SN+ AE  +W+   +V+K M D G++K P +S++E    +H F
Sbjct: 636 QLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVF 695

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
            A+   HPQ  EI   ++ +  +++  GY P+      +VD+E K   + YHSE+LA+AF
Sbjct: 696 SANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAF 755

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            LIN+     I + KNLR C DCH A K++S+I  REI VRD+ RFH F+ G+CSC D+W
Sbjct: 756 ALINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 184/381 (48%), Gaps = 38/381 (9%)

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F  + +I  Y   G +  A ++F+ +  R +V++ T+I  Y++      A  LF +M  S
Sbjct: 75  FSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRS 134

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
             QPD  T++ + + C +L   +   Q HA + K LG                      +
Sbjct: 135 GSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVK-LG---------------------HH 172

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
           +  RV +T            ++  Y + G ++ AR+LF +M   D VS+  MI+GY+  G
Sbjct: 173 LNHRVCNT------------LLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNG 220

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +A+ELF +M++LG  P + T  AV+ A VGL    FG+++H  ++    F RN+F+ 
Sbjct: 221 LNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIH-GFVVKTSFIRNVFVG 279

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A +D Y+K   ++    +F ++P+ L  VS +N II+  A  G  + SI +F+E++   
Sbjct: 280 NAFLDFYSKHDCVNEVRKLFNEMPE-LDGVS-YNVIITAYAWVGKVKESIDLFQELQFTT 337

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
                  F T+L   +    ++ G+Q    ++     P       +VD+ A+ G+ +EA 
Sbjct: 338 FDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEAD 397

Query: 505 GLIQSMPYDANSVIWRALLAA 525
            +   +    ++V W A+++A
Sbjct: 398 RIFLRLS-SRSTVPWTAMISA 417


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/637 (36%), Positives = 348/637 (54%), Gaps = 45/637 (7%)

Query: 87  DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
           DS  E+L   ++ L    +  +   +  +L  C        G  +H H+I+     DL +
Sbjct: 29  DSDDESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVM 88

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            N L++ Y+  G +  A KVF+    RD V++ TLI+GY+Q   P  AL LF +M     
Sbjct: 89  NNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGF 148

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
            P+ FT  ++  A         G Q H        CV               KCG     
Sbjct: 149 SPNEFTLSSVIKAAAAERRGCCGHQLHGF------CV---------------KCGF---- 183

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                      +    S+++  YTR G ++ A+ +FD ++ R+ VSW A+I+G+++  G 
Sbjct: 184 ---------DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGT 234

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN----VVFGRNIF 382
            +ALELF  M   G  P   +  ++  AC   G L+ GK +H   I++    V F  N  
Sbjct: 235 EKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 294

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L     DMYAK GSI  A  +F ++ K  + V  +NS+++  AQHG G  ++  F EM  
Sbjct: 295 L-----DMYAKSGSIHDARKIFDRLAK--RDVVSWNSLLTAYAQHGFGNEAVCWFEEMRR 347

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            G++P+ ++F++VL ACSH GL++EG  ++E M   GI  +  HY  +VDLL R G L+ 
Sbjct: 348 GGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNR 407

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           A   I+ MP +  + IW+ALL ACR+H+N ++G  A + + +L+PD    +V+L N+ A 
Sbjct: 408 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 467

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             RW +A +VRK M +SG++K P  S++E    +H F+A+ + HPQ +EI    +++  K
Sbjct: 468 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 527

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +K  GYVP+T  V+  VD++E+E  + YHSEK+ALAF L+N+    TI I KN+R+CGDC
Sbjct: 528 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 587

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           H A KL S+   REI+VRD  RFH FK G CSC D+W
Sbjct: 588 HSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 223/478 (46%), Gaps = 53/478 (11%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+ C   K L Q   +HG ++ S   H  + ++ L++ +A  G    L  +R +F ++ 
Sbjct: 57  LLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCG---SLEEARKVFDKMP 113

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W TL+ GYS+ D P +ALVL+  ML  G  SPN FT   V+ + A       G 
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGF-SPNEFTLSSVIKAAAAERRGCCGH 172

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+H   +K G + ++ + +AL+  Y+ +G +++A  VF+   +R+ VS+N LI G+A+  
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRC 232

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN---LGCVGSN 246
               AL LF+ M     +P  F++ ++F AC+       GK  HA + K+   L     N
Sbjct: 233 GTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 292

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            LL     +MYAK G ++ A ++F  +   +   +W+S+                     
Sbjct: 293 TLL-----DMYAKSGSIHDARKIFDRLA-KRDVVSWNSL--------------------- 325

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                     ++ Y+Q G  ++A+  F +M   GI P+E++ ++VL AC   G LD G  
Sbjct: 326 ----------LTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWH 375

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            ++   ++ +        T ++D+  + G ++ AL    ++P    T +++ ++++    
Sbjct: 376 YYELMKKDGIVLEAWHYVT-IVDLLGRAGDLNRALRFIEEMPIE-PTAAIWKALLNACRM 433

Query: 427 HGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           H    T +  +    +  L PD     V +    + GG   +  +  + M   G+K +
Sbjct: 434 H--KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 489


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 354/595 (59%), Gaps = 19/595 (3%)

Query: 42  SSQLISFFALS--GCKNGLFRSRILFSQIDNP--NIFIWNTLMRGYS----RSDSPQEAL 93
           S +L++ FALS       L  +  + + + +P  +   +N   R  S    R    +  L
Sbjct: 46  SDRLVAAFALSDPASPRPLLHALAILASLPSPPDSASPYNAAFRALSLCPHRHLVDRHCL 105

Query: 94  VLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153
            LY ++L      P++ TFPF+L +CARL     G  +  H+ K G   D+F+ NA +HF
Sbjct: 106 PLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHF 165

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF-RKMQDS-CIQPDAF 211
           +S+ G +  A ++F+ S ARD+VS+NTLI GY +   P  AL LF R ++D   ++PD  
Sbjct: 166 WSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEV 225

Query: 212 TFVAMFSACTELNDPRIGKQFHAVV-YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
           T +   S C ++ D  +GK+ H  V  K + C    + L  AV++MY KCG + +A+ VF
Sbjct: 226 TMIGAVSGCAQMGDLELGKRLHEFVDSKGVRC---TVRLMNAVMDMYVKCGSLELAKSVF 282

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             +  +K+  +W++MI G+ R G +E AR LFD+M +RD+  W A+++GY Q     +A+
Sbjct: 283 ERID-NKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAI 341

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
            LF +M+   + P+E+TMV +L AC  LGAL+ G  +H  YI+      ++ L T+++DM
Sbjct: 342 ALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH-YIDRHQLYLSVALGTSLVDM 400

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           YAKCG+I  A+ +F +IP   K    + ++I GLA HG  + +I  F+ M  +GL+PD +
Sbjct: 401 YAKCGNIKKAICIFKEIPD--KNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEI 458

Query: 451 TFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           TF+ VL AC H GLV+EG+QFF  M   Y ++ +M+HY CM+DLL R G LDEA  L+ +
Sbjct: 459 TFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNT 518

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569
           MP D ++V+W AL  ACR+H N  +GE A  KL++L+P     YVLL+NM AE    ++A
Sbjct: 519 MPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKA 578

Query: 570 RQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
            +VR +M   G++K PG S IE NG +H F+   KSH  T  I   L  +T+++K
Sbjct: 579 DKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMK 633


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/789 (33%), Positives = 410/789 (51%), Gaps = 86/789 (10%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLN---HHIS---SSQLISFFALSGCKN 56
           R+ +E  + +AL+  C+  K+A +  G  V+S ++    H+S    + L+S F   G   
Sbjct: 101 RIPVEDDAYVALIRLCE-WKRARK-EGSRVYSYVSISMSHLSLQLGNALLSMFVRFG--- 155

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            L  +  +F +++  N+F WN L+ GY+++    EAL LY  ML  G V P+ +TFP VL
Sbjct: 156 NLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG-VKPDVYTFPCVL 214

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +C  + +   G +IH H+I++G E D+ + NALI  Y   G +N A  VF+    RD +
Sbjct: 215 RTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRI 274

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N +I+GY +       L LF  M    + PD  T  ++ +AC  L D R+G+Q H  V
Sbjct: 275 SWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYV 334

Query: 237 ------------------YKNLGCVGS-----------NMLLKTAVINMYAKCGLMNMAE 267
                             Y ++G +             +++  TA+I+ Y  C +   A 
Sbjct: 335 LRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKAL 394

Query: 268 RVFSTM--------------------------------------GMSKSTAAWSSMISGY 289
             +  M                                      G+   +   +S+I  Y
Sbjct: 395 ETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMY 454

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            +   I++A ++F    ++++VSWT++I G        +AL  F +M    + P+ VT+V
Sbjct: 455 AKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVTLV 513

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
            VL AC  +GAL  GK +H   +   V   + F+  A++DMY +CG ++ A   F+ +  
Sbjct: 514 CVLSACARIGALTCGKEIHAHALRTGV-SFDGFMPNAILDMYVRCGRMEYAWKQFFSVDH 572

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
               V+ +N +++G A+ G G  +  +F+ M    + P+ VTF+++LCACS  G+V EG 
Sbjct: 573 E---VTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGL 629

Query: 470 QFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           ++F SM   Y I P ++HY C+VDLL R G+L+EAY  IQ MP   +  +W ALL +CR+
Sbjct: 630 EYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRI 689

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H + ++GE+A + +   +     +Y+LLSN+ A+  +W++  +VRK+M  +G+   PG S
Sbjct: 690 HHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCS 749

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           ++E  GT+H FL+S   HPQ KEI  +L+    K+K AG V        D+ E  K  + 
Sbjct: 750 WVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAG-VEGPESSHMDIMEASKADIF 808

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSE+LA+ FGLINS     I +TKNL +C  CH   K +S   RREI VRDA +FH F
Sbjct: 809 CGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHF 868

Query: 709 KKGNCSCMD 717
           K G CSC D
Sbjct: 869 KGGICSCTD 877



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 100/203 (49%), Gaps = 4/203 (1%)

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
           +G   +A+     M  L I  ++   VA++R C    A   G R++  Y+   +   ++ 
Sbjct: 84  LGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVY-SYVSISMSHLSLQ 142

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L  A++ M+ + G++  A  VF ++ K  + +  +N ++ G A+ GL + ++ ++  M  
Sbjct: 143 LGNALLSMFVRFGNLVDAWYVFGRMEK--RNLFSWNVLVGGYAKAGLFDEALDLYHRMLW 200

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           +G+KPD  TF  VL  C     +  G++    ++ YG +  ++    ++ +  + G ++ 
Sbjct: 201 VGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNT 260

Query: 503 AYGLIQSMPYDANSVIWRALLAA 525
           A  +   MP + + + W A+++ 
Sbjct: 261 ARLVFDKMP-NRDRISWNAMISG 282


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/724 (33%), Positives = 392/724 (54%), Gaps = 78/724 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F+++   ++F WN ++ GY +    +EAL LY  ML  G+  P+ +TFP VL +C  + 
Sbjct: 153 VFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGM-RPDVYTFPCVLRTCGGIP 211

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            ++ G ++H H+++FG   ++ + NAL+  Y+  G I  A KVF+G    D +S+N +I 
Sbjct: 212 DWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV-------- 235
           G+ +  E    L LF  M ++ +QP+  T  ++  A   L++    K+ H          
Sbjct: 272 GHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI 331

Query: 236 ----------VYKNLGCVG------SNMLLK-----TAVINMYAKCGLMNMAERVFSTM- 273
                     +Y +LG +G      S M  K     TA+I+ Y K G  + A  V++ M 
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALME 391

Query: 274 -------------------------------------GMSKSTAAWSSMISGYTREGKIE 296
                                                G  +     ++++  Y +   I+
Sbjct: 392 LHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHID 451

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRAC 355
           +A ++F  M ++D+VSW++MI+G+       +AL  F  M  LG + P+ VT +A L AC
Sbjct: 452 KAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALSAC 509

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              GAL  GK +H  Y+     G   ++  A++D+Y KCG    A + F     + K V 
Sbjct: 510 AATGALRSGKEIHA-YVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSV--HSEKDVV 566

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N ++SG   HGLG+ ++++F +M  MG  PD VTFV +LCACS  G+V +G + F  M
Sbjct: 567 SWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMM 626

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              + I P ++HY CMVDLL+R G+L EAY LI  MP   ++ +W ALL  CR+HR+ ++
Sbjct: 627 TEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVEL 686

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
           GE+A + +L+LEP+  A++VLL ++  +  +W +  +VRK M + G+++  G S++E  G
Sbjct: 687 GELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKG 746

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
             H FL   +SHPQ KEI ++L  +  ++K+ G+ P  V+ + D  E  ++ ++  HSE+
Sbjct: 747 VTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAP--VESLED-KEVSEDDILCGHSER 803

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFGLIN+    TI +TKN   C  CH+ FK +SEI RREI VRD  + H FK G+CS
Sbjct: 804 LAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCS 863

Query: 715 CMDF 718
           C D 
Sbjct: 864 CGDI 867



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 212/467 (45%), Gaps = 81/467 (17%)

Query: 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
           F L + NA++     FG I +A +VF     RD+ S+N ++ GY +V     AL L+ +M
Sbjct: 129 FGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRM 188

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             + ++PD +TF  +   C  + D R+G++ HA V +  G  G  + +  A++ MYAKCG
Sbjct: 189 LWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLR-FG-FGDEVDVLNALVTMYAKCG 246

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR------------- 308
            +  A +VF  M ++    +W++MI+G+    + E   +LF  M +              
Sbjct: 247 DIVAARKVFDGMAVTDCI-SWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVT 305

Query: 309 --------------------------DLVSWTAMISGYSQVGGFSQALELFGKMESL--- 339
                                     D+    ++I  Y+ +G    A ++F +ME+    
Sbjct: 306 VASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAM 365

Query: 340 ----------------------------GIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
                                        + PD+VT+ + L AC  LG LD G +LH + 
Sbjct: 366 SWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLH-EL 424

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
            +N  F R + +  A+++MYAK   ID A+ VF  + +  K V  ++S+I+G   +    
Sbjct: 425 AQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAE--KDVVSWSSMIAGFCFNHRSF 482

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++  FR M L  +KP+ VTF+  L AC+  G +  GK+    +L  GI  +      ++
Sbjct: 483 EALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALL 541

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           DL  + G+   A+    S+  + + V W  +L+    H    +G+IA
Sbjct: 542 DLYVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFVAH---GLGDIA 584



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 13/205 (6%)

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR-LHQQYIENVVFGRNIF 382
           G  +QAL L   +ES    PDE   VA+ R C    A+D G R   +   E+  FG  + 
Sbjct: 78  GQLAQALWL---LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFG--LR 132

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L  A++ M  + G I  A  VF K+P+  + V  +N ++ G  + G  E ++ ++  M  
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPE--RDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 443 MGLKPDGVTFVTVLCACSHGGLVE--EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
            G++PD  TF  VL  C  GG+ +   G++    +L +G   +++    +V + A+ G +
Sbjct: 191 AGMRPDVYTFPCVLRTC--GGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDI 248

Query: 501 DEAYGLIQSMPYDANSVIWRALLAA 525
             A  +   M    + + W A++A 
Sbjct: 249 VAARKVFDGMAV-TDCISWNAMIAG 272


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 349/600 (58%), Gaps = 46/600 (7%)

Query: 128 GCQIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           G Q+H   I+ GL   D F  +AL+H Y+      +A K F+   + + V    + +GY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 187 QVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +     P+L LFRK+    S    D    +  FSA   + D  I    HA+V K      
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKT----- 222

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK--IERARQLF 302
                                        G+       ++M+  Y + G+  +  AR++F
Sbjct: 223 -----------------------------GLDGDAGVVNTMLDAYAKGGRRDLGAARKVF 253

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG--IHPDEVTMVAVLRACVGLGA 360
           D M ++D+VSW +MI+ Y+Q G  + AL L+ KM ++   I  + VT+ A+L AC   G 
Sbjct: 254 DTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGT 312

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +  GK +H Q +  +    N+++ T+V+DMY+KCG ++ A   F KI +  K +  ++++
Sbjct: 313 IQTGKCIHNQVVR-MGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKE--KNILSWSAM 369

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I+G   HG G+ ++ +F EM   G  P+ +TF++VL ACSH GL+++G+ ++ +M   +G
Sbjct: 370 ITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFG 429

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I+P +EHYGCMVDLL R G LDEAYGLI+ M    ++ IW ALL+ACR+H+N ++ EI+ 
Sbjct: 430 IEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISA 489

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
           ++L +L+  +  +YVLLSN+ AE   W++  ++R L+   GI+KPPG+S +E  G  H F
Sbjct: 490 KRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLF 549

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
               KSHPQ KEI   L  +  K++ AGYVPNT  V+ D+DEEEK + +  HSEKLA+AF
Sbjct: 550 YVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAF 609

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            L+NS     I + KNLR+C DCH A KL+++I +REI+VRD  RFH FK G+CSC D+W
Sbjct: 610 ALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 196/412 (47%), Gaps = 52/412 (12%)

Query: 26  QIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           Q+H   + SGL  +   S+S L+  +  + C   +  +R  F +I +PN  I   +  GY
Sbjct: 110 QLHLLAIRSGLFPSDPFSASALLHMY--NHCSRPI-DARKAFDEIPSPNPVIITAMASGY 166

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV-LNSCARLSSFKSGCQIHCHIIKFGLEF 142
            R++    +L L+  +++ G  +  +     V  ++ AR+        +H  ++K GL+ 
Sbjct: 167 VRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDG 226

Query: 143 DLFIRNALIHFYSIFGY--INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           D  + N ++  Y+  G   +  A KVF+ ++ +D+VS+N++I  YAQ      AL L+RK
Sbjct: 227 DAGVVNTMLDAYAKGGRRDLGAARKVFD-TMEKDVVSWNSMIALYAQNGMSADALGLYRK 285

Query: 201 MQD--SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           M +    I+ +A T  A+  AC      + GK  H  V + +G +  N+ + T+V++MY+
Sbjct: 286 MLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVR-MG-LEENVYVGTSVVDMYS 343

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG + MA + F  +   K+  +WS+MI+GY                           + 
Sbjct: 344 KCGRVEMARKAFQKI-KEKNILSWSAMITGYG--------------------------MH 376

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           G+ Q     +AL++F +M   G +P+ +T ++VL AC   G LD G+  +    +     
Sbjct: 377 GHGQ-----EALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIE 431

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT---VSLFNSIISGLAQH 427
             +     ++D+  + G +D A    Y + K +K     +++ +++S    H
Sbjct: 432 PGVEHYGCMVDLLGRAGCLDEA----YGLIKEMKVKPDAAIWGALLSACRIH 479



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 147/304 (48%), Gaps = 8/304 (2%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
            +H  +V +GL+        +      G +  L  +R +F  ++  ++  WN+++  Y++
Sbjct: 214 SLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQ 272

Query: 86  SDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           +    +AL LY  ML+  G +  N  T   +L +CA   + ++G  IH  +++ GLE ++
Sbjct: 273 NGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENV 332

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           ++  +++  YS  G +  A K F+    ++++S++ +I GY        AL +F +M  S
Sbjct: 333 YVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRS 392

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
              P+  TF+++ +AC+       G+ ++  + K  G +   +     ++++  + G ++
Sbjct: 393 GQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFG-IEPGVEHYGCMVDLLGRAGCLD 451

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQMDQRDLVSWTAMISGY 320
            A  +   M +    A W +++S       +E     A++LF ++D  +   +  + + Y
Sbjct: 452 EAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLF-ELDATNCGYYVLLSNIY 510

Query: 321 SQVG 324
           ++ G
Sbjct: 511 AEAG 514


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 366/638 (57%), Gaps = 39/638 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L +C +  S     +IH H +K     D  + + L   Y     +  A ++F+      
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           ++ +N +I  YA       A+ L+  M    ++P+ +T+  +  AC+ L     G + H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
             +  +  + S++ + TA+++ YAKCG++  A+R+FS+M   +   AW++MI+G +  G 
Sbjct: 134 --HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYGL 190

Query: 295 IERA--------------------------------RQLFDQMDQRDLVSWTAMISGYSQ 322
            + A                                R++FD M  R+ VSW+AMI GY  
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVA 250

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                +AL++F  M+  GI PD  TM+ VL AC  L AL  G   H  Y+    F  +  
Sbjct: 251 SDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG-YLIVRGFATDTL 309

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +  A+IDMY+KCG I  A  VF ++ ++   +  +N++I G   HGLG  ++ +F ++  
Sbjct: 310 ICNALIDMYSKCGKISFAREVFNRMDRH--DIVSWNAMIIGYGIHGLGMEALGLFHDLLA 367

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLD 501
           +GLKPD +TF+ +L +CSH GLV EG+ +F++M  ++ I P+MEH  CMVD+L R G +D
Sbjct: 368 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 427

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA+  I++MP++ +  IW ALL+ACR+H+N ++GE   +K+  L P+   ++VLLSN+ +
Sbjct: 428 EAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYS 487

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
              RW++A  +R    D G++K PG S+IE NG +H F+   +SH Q  +I   L+++ +
Sbjct: 488 AAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLV 547

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           ++K  GY      V  DV+EEEKE ++ YHSEKLA+AFG++N ++   I +TKNLR+CGD
Sbjct: 548 EMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGD 607

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A K ++ I +REI VRDA RFH FK G C+C DFW
Sbjct: 608 CHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 243/504 (48%), Gaps = 41/504 (8%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           L LLE+C   KSL +A +IH   + +  N   S    ++   LS   N +  +R LF +I
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC--NQVVLARRLFDEI 69

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            NP++ +WN ++R Y+ +     A+ LY SML  G V PN +T+PFVL +C+ L + + G
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDG 128

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH H   FGLE D+F+  AL+ FY+  G +  A ++F     RD+V++N +I G +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL-------- 240
                A+ L  +MQ+  I P++ T V +   C  L   R  K F  +  +N         
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYAR--KIFDVMGVRNEVSWSAMIG 246

Query: 241 GCVGSNMLLK-----------------TAVINMYAKCGLMNMAERVFST------MGMSK 277
           G V S+ + +                 T ++ +   C  +   +  F +       G + 
Sbjct: 247 GYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT 306

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
            T   +++I  Y++ GKI  AR++F++MD+ D+VSW AMI GY   G   +AL LF  + 
Sbjct: 307 DTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL 366

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
           +LG+ PD++T + +L +C   G +  G+        +      +     ++D+  + G I
Sbjct: 367 ALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLI 426

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           D A      +P     V ++++++S    H   E    V ++++ +G +  G  FV +  
Sbjct: 427 DEAHHFIRNMPFE-PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTG-NFVLLSN 484

Query: 458 ACSHGGLVEEGKQFFESMLNYGIK 481
             S  G  ++      +  ++G+K
Sbjct: 485 IYSAAGRWDDAAHIRITQKDWGLK 508


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/726 (33%), Positives = 396/726 (54%), Gaps = 59/726 (8%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           + +  L SC   +SL+  ++IH  +V S L      S+ L++ +   G    L  ++ +F
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCG---SLSHAKRVF 116

Query: 66  SQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           ++++   N+  W+ +   ++   +  EAL  +  ML  GI +  +     +L++C+  + 
Sbjct: 117 AKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKS-AMVTILSACSSPAL 175

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG--SLARDLVSYNTLI 182
            + G  IH  I   G E +L + NA++  Y   G +  A KVF+      RD+VS+N ++
Sbjct: 176 VQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 235

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y        A+ L+++MQ   ++PD  T+V++ SAC+   D  +G+  H  +  +   
Sbjct: 236 STYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE-- 290

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  N+++  A+++MYAKCG                           +T       AR +F
Sbjct: 291 LEKNVIVGNALVSMYAKCG--------------------------SHTE------ARAVF 318

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-------ESLGIHPDEVTMVAVLRAC 355
           D+M+QR ++SWT +IS Y +    ++A  LF +M        S  + PD +  V +L AC
Sbjct: 319 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 378

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             + AL+ GK + +Q   +     +  + TAV+++Y KCG I+ A  +F  +      V 
Sbjct: 379 ADVSALEQGKMVSEQ-AASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSR-PDVQ 436

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
           L+N++I+  AQ G    ++ +F  ME+ G++PD  +FV++L ACSH GL ++GK +F SM
Sbjct: 437 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 496

Query: 476 LN--YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
                 +   ++H+GC+ DLL R GRL EA   ++ +P   ++V W +LLAACR HR+ K
Sbjct: 497 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 556

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
             +    KLL LEP     YV LSN+ AE  +W    +VRK M + G++K  G S IE  
Sbjct: 557 RAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIG 616

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H F     +HP+ +EI   L  +  ++K  GYVP+T  V+  VDE+EKE ++  HSE
Sbjct: 617 KYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSE 676

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           +LA+A GLI++     +R+TKNLR+C DCH A KL+S+I  R+I+VRD  RFHLFK G C
Sbjct: 677 RLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKC 736

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 737 SCQDYW 742



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 192/439 (43%), Gaps = 81/439 (18%)

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           +A   F+    R+L S+  L+  +A   +    L    +M+   ++PDA TF+    +C 
Sbjct: 10  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 69

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           +    R G + H +V  +   +     +  A++NMY KCG ++ A+RVF+ M  +++  +
Sbjct: 70  DPESLRDGIRIHQMVVDSRLEIDPK--VSNALLNMYKKCGSLSHAKRVFAKMERTRNVIS 127

Query: 282 WSSMISGYTREGKIERARQLFDQM--------------------------DQR------- 308
           WS M   +   G +  A + F  M                          D R       
Sbjct: 128 WSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIA 187

Query: 309 ------DLVSWTAMISGYSQVGGFSQALELFGKMES------------------------ 338
                 +L+   A+++ Y + G   +A ++F  M+                         
Sbjct: 188 LSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDA 247

Query: 339 ------LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
                 + + PD+VT V++L AC     +  G+ LH+Q + N    +N+ +  A++ MYA
Sbjct: 248 IQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIV-NDELEKNVIVGNALVSMYA 306

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM---ELMG----L 445
           KCGS   A +VF K+ +  +++  + +IIS   +  L   +  +F++M   E  G    +
Sbjct: 307 KCGSHTEARAVFDKMEQ--RSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRV 364

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           KPD + FVT+L AC+    +E+GK   E   + G+         +V+L  + G ++EA  
Sbjct: 365 KPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARR 424

Query: 506 LIQSMPYDANSVIWRALLA 524
           +  ++    +  +W A++A
Sbjct: 425 IFDAVCSRPDVQLWNAMIA 443



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 131/261 (50%), Gaps = 4/261 (1%)

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A+  FD ++QR+L SWT +++ ++  G   + L    +M   G+ PD VT +  L +C  
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
             +L  G R+HQ  +++     +  ++ A+++MY KCGS+  A  VF K+ +    +S  
Sbjct: 71  PESLRDGIRIHQMVVDS-RLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW- 128

Query: 418 NSIISGL-AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
            SI++G  A HG    ++  FR M L+G+K      VT+L ACS   LV++G+     + 
Sbjct: 129 -SIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIA 187

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
             G + ++     ++ +  R G ++EA  +  +M      V+   ++ +  +H +     
Sbjct: 188 LSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDA 247

Query: 537 IAGQKLLDLEPDHGAHYVLLS 557
           I   + + L PD   +  LLS
Sbjct: 248 IQLYQRMQLRPDKVTYVSLLS 268


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 384/714 (53%), Gaps = 44/714 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
            S+LL++L      K    IHG +V  G +  +   + L+  +A +G       + ++F Q
Sbjct: 355  STLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRS---VEANLVFKQ 411

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            +   ++  WN+LM  +       +AL L  SM+S G  S N  TF   L +C     F+ 
Sbjct: 412  MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG-KSVNYVTFTSALAACFTPDFFEK 470

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            G  +H  ++  GL ++  I NAL+  Y   G ++ + +V      RD+V++N LI GYA+
Sbjct: 471  GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAE 530

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSN 246
             ++P  AL  F+ M+   +  +  T V++ SAC    D    GK  HA +        S+
Sbjct: 531  DEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVS--AGFESD 588

Query: 247  MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
              +K ++I MYAKCG                                 +  ++ LF+ +D
Sbjct: 589  EHVKNSLITMYAKCG--------------------------------DLSSSQDLFNGLD 616

Query: 307  QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             R++++W AM++  +  G   + L+L  KM S G+  D+ +    L A   L  L+ G++
Sbjct: 617  NRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ 676

Query: 367  LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            LH   ++ + F  + F+  A  DMY+KCG I   + +    P   +++  +N +IS L +
Sbjct: 677  LHGLAVK-LGFEHDSFIFNAAADMYSKCGEIGEVVKML--PPSVNRSLPSWNILISALGR 733

Query: 427  HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
            HG  E   A F EM  MG+KP  VTFV++L ACSHGGLV++G  +++ +  ++G++P +E
Sbjct: 734  HGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIE 793

Query: 486  HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            H  C++DLL R GRL EA   I  MP   N ++WR+LLA+C++H N   G  A + L  L
Sbjct: 794  HCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKL 853

Query: 546  EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            EP+  + YVL SNM A T RWE+   VRK M    I+K    S+++    +  F    ++
Sbjct: 854  EPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRT 913

Query: 606  HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            HPQT EI   L+D+   +K +GYV +T Q + D DEE+KE  +  HSE+LALA+ L+++ 
Sbjct: 914  HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTP 973

Query: 666  SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               T+RI KNLRIC DCH  +K +S +  R I++RD  RFH F++G CSC D+W
Sbjct: 974  EGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 229/521 (43%), Gaps = 89/521 (17%)

Query: 21  LKQALQIHGQIVHSGL--NHHISSS--QLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
            ++ +Q+HG +  SGL  + ++S++   L   + L  C      SR +F ++ + N+  W
Sbjct: 190 FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC------SRKVFEEMPDRNVVSW 243

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +LM GYS    P+E + +Y                     S  R        QI   ++
Sbjct: 244 TSLMVGYSDKGEPEEVIDIYKD------------------ESLGR--------QIIGQVV 277

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ---VKEPCP 193
           K GLE  L + N+LI      G ++ A+ +F+    RD +S+N++   YAQ   ++E   
Sbjct: 278 KSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFR 337

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK----NLGCVGSNMLL 249
              L R+  D   + ++ T   + S    ++  + G+  H +V K    ++ CV  N LL
Sbjct: 338 IFSLMRRFHD---EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV-CNTLL 393

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +     MYA  G    A  VF  M  +K   +W+S+++ +  +G+          +D   
Sbjct: 394 R-----MYAGAGRSVEANLVFKQMP-TKDLISWNSLMASFVNDGR---------SLD--- 435

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                              AL L   M S G   + VT  + L AC      + G+ LH 
Sbjct: 436 -------------------ALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHG 476

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             + + +F  N  +  A++ MY K G +  +  V  ++P+  + V  +N++I G A+   
Sbjct: 477 LVVVSGLF-YNQIIGNALVSMYGKIGEMSESRRVLLQMPR--RDVVAWNALIGGYAEDED 533

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
            + ++A F+ M + G+  + +T V+VL AC   G L+E GK     +++ G +       
Sbjct: 534 PDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN 593

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            ++ + A+ G L  +  L   +  + N + W A+LAA   H
Sbjct: 594 SLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 633



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 198/448 (44%), Gaps = 59/448 (13%)

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G  +H   +K  +   +   N LI+ Y+ FG +  A  +F+    R+ VS+NT+++G  
Sbjct: 90  TGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGS 245
           +V      +  FRKM D  I+P +F   ++ +AC       R G Q H  V K+ G + S
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKS-GLL-S 207

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK----------- 294
           ++ + TA++++Y   GL++ + +VF  M   ++  +W+S++ GY+ +G+           
Sbjct: 208 DVYVSTAILHLYGVYGLVSCSRKVFEEMP-DRNVVSWTSLMVGYSDKGEPEEVIDIYKDE 266

Query: 295 ----------------------------------IERARQLFDQMDQRDLVSWTAMISGY 320
                                             ++ A  +FDQM +RD +SW ++ + Y
Sbjct: 267 SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 326

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD---FGKRLHQQYIENVVF 377
           +Q G   ++  +F  M       DEV    V      LG +D   +G+ +H   ++ + F
Sbjct: 327 AQNGHIEESFRIFSLMRRF---HDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK-MGF 382

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
              + +   ++ MYA  G    A  VF ++P   K +  +NS+++     G    ++ + 
Sbjct: 383 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPT--KDLISWNSLMASFVNDGRSLDALGLL 440

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497
             M   G   + VTF + L AC      E+G+     ++  G+         +V +  + 
Sbjct: 441 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI 500

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G + E+  ++  MP   + V W AL+  
Sbjct: 501 GEMSESRRVLLQMPR-RDVVAWNALIGG 527


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/621 (37%), Positives = 353/621 (56%), Gaps = 44/621 (7%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           SP+  T+  ++  C   SS   G ++H HI+  G + D F+   LI  YS  G ++ A K
Sbjct: 74  SPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK 133

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC--TEL 223
           VF+ +  R +  +N L             L L+ KM    ++ D FT+  +  AC  +E 
Sbjct: 134 VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 224 NDPRI--GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
               +  GK+ HA + +      S++ + T +++MYA+ G ++ A  V            
Sbjct: 194 TADHLTKGKEIHAHLTRR--GYNSHVYIMTTLVDMYARFGCVDYASYV------------ 239

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM--ESL 339
                               F+ M  R++VSW+AMI+ Y++ G   +AL  F +M  E+ 
Sbjct: 240 --------------------FNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETK 279

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
              P+ VTMV+VL+AC  L AL+ G+ +H  YI        + + +A++ MY +CG +D 
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGRLIHG-YILRRGLDSILPVISALVTMYGRCGKLDV 338

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
              VF ++  + + V  +NS+IS    HG G  +I +F EM   G  P  VTFV+VL AC
Sbjct: 339 GQRVFDRM--HDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 460 SHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLVEEGK+ FESM  ++GIKPQ+EHY CMVDLL R  RLDEA  ++Q M  +    +
Sbjct: 397 SHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W +LL +CR+H N ++ E A ++L  LEP +  +YVLL+++ AE   W+E ++V+KL++ 
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 516

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G+QK PG  ++E    ++ F++  + +P  ++I   L  +   +K  GY+P T  V+++
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           ++ EEKE +V  HSEKLALAFGLIN+   E IRITKNLR+C DCHL  K +S+   +EI+
Sbjct: 577 LETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD  RFH FK G CSC D+W
Sbjct: 637 VRDVNRFHRFKNGVCSCGDYW 657



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 140/288 (48%), Gaps = 10/288 (3%)

Query: 21  LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           L +  +IH  +   G N H+   + L+  +A  GC +    +  +F+ +   N+  W+ +
Sbjct: 198 LTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVD---YASYVFNGMPVRNVVSWSAM 254

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           +  Y+++    EAL  +  M+++    SPN+ T   VL +CA L++ + G  IH +I++ 
Sbjct: 255 IACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRR 314

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL+  L + +AL+  Y   G ++   +VF+    RD+VS+N+LI+ Y        A+ +F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIF 374

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M  +   P   TFV++  AC+       GK+    ++++ G +   +     ++++  
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHG-IKPQVEHYACMVDLLG 433

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA----RQLF 302
           +   ++ A ++   M        W S++      G +E A    R+LF
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 12/218 (5%)

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           +S   +I    + G   QAL +  +  S    P + T   ++  C    +L  G R+H+ 
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            ++N    ++ FL T +I MY+  GS+D A  VF K  K  +T+ ++N++   L   G G
Sbjct: 103 ILDNGS-DQDPFLATKLIGMYSDLGSVDYARKVFDKTRK--RTIYVWNALFRALTLAGHG 159

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCAC----SHGGLVEEGKQFFESMLNYGIKPQMEH 486
           E  + ++ +M  +G++ D  T+  VL AC         + +GK+    +   G    +  
Sbjct: 160 EEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYI 219

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
              +VD+ AR G +D A  +   MP   N V W A++A
Sbjct: 220 MTTLVDMYARFGCVDYASYVFNGMPV-RNVVSWSAMIA 256



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 92/192 (47%), Gaps = 26/192 (13%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILF 65
           +++++L++C SL   +Q   IHG I+  GL+  +   S L++ +   G    L   + +F
Sbjct: 287 TMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCG---KLDVGQRVF 343

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++ + ++  WN+L+  Y      ++A+ ++  ML+ G  SP   TF  VL +C+     
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANG-ASPTPVTFVSVLGACSHEGLV 402

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS-LARDLVSYNTLING 184
           + G ++   + +     D  I+  + H+  +   +  A+++ E + + +D+ +       
Sbjct: 403 EEGKRLFESMWR-----DHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRT------- 450

Query: 185 YAQVKEPCPALW 196
                EP P +W
Sbjct: 451 -----EPGPKVW 457


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/657 (36%), Positives = 365/657 (55%), Gaps = 17/657 (2%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N + W+T++   S       A+ +Y     K I           L  C R+ 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITG--LAQCGRID 339

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +        + +   E  +   NALI  Y   G +N A ++F+    R+ +S+  +I 
Sbjct: 340 DARI-------LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ      AL L +++  S + P   +  ++F AC+ +     G Q H++  K +GC 
Sbjct: 393 GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK-VGC- 450

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N     A+I MY KC  M  A +VFS M ++K   +W+S ++   +   ++ AR  FD
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFD 509

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M  RD VSWT +IS Y+     ++A+  F  M      P+   +  +L  C  LGA   
Sbjct: 510 NMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKI 569

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+++H   I+ +     + +  A+I MY KCG  D+   +F  + +  + +  +N+II+G
Sbjct: 570 GQQIHTVAIK-LGMDSELIVANALISMYFKCGCADSR-RIFDLMEE--RDIFTWNTIITG 625

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
            AQHGLG  +I +++ ME  G+ P+ VTFV +L ACSH GLV+EG +FF+SM  +YG+ P
Sbjct: 626 YAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTP 685

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
             EHY CMVDLL R G +  A   I  MP + ++VIW ALL AC++H+NA+IG+ A +KL
Sbjct: 686 LPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKL 745

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
             +EP +  +YV+LSN+ +    W E  +VRK+M   G+ K PG S+ +    +H F+  
Sbjct: 746 FRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTG 805

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            K H Q +EI   L+++   LK+ GYVP+T  V+ D+DEE+KE+ + YHSEKLA+A+ L+
Sbjct: 806 DKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLL 865

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +     I+I KNLRICGDCH   K +S + +R+I +RD  RFH F+ G+CSC DFW
Sbjct: 866 ATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 191/371 (51%), Gaps = 26/371 (7%)

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +  A +VF+    RD++++N++I+ Y     P  A    R + D+    +  T   +
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA----RDLYDAISGGNMRTGAIL 102

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            S        R+G+   A    + G +  N +   A+I+ Y + G + MA R+F  M  S
Sbjct: 103 LSGYG-----RLGRVLEARRVFD-GMLERNTVAWNAMISCYVQNGDITMARRLFDAMP-S 155

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           +  ++W+SM++GY    ++  AR LF++M +R+LVSWT MISGY ++    +A ++F KM
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ PD+    + L A  GLG LD  + L    ++   F R++ + TA++++Y++  S
Sbjct: 216 HREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALK-TGFERDVVIGTAILNVYSRDTS 274

Query: 397 I-DTALSVFYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           + DTA+  F   I +N  T   ++++I+ L+  G  + +IAV+    +  +       +T
Sbjct: 275 VLDTAIKFFESMIERNEYT---WSTMIAALSHGGRIDAAIAVYERDPVKSIACR-TALIT 330

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
            L  C   G +++ +  FE +     +P +  +  ++    ++G ++EA  L   MP+  
Sbjct: 331 GLAQC---GRIDDARILFEQI----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPF-R 382

Query: 515 NSVIWRALLAA 525
           N++ W  ++A 
Sbjct: 383 NTISWAGMIAG 393



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 196/417 (47%), Gaps = 51/417 (12%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   N+  W  ++ GY R ++  +A  ++  M  +G++ P+   F   L++  
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL-PDQSNFASALSAVK 235

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYN 179
            L +      +    +K G E D+ I  A+++ YS     ++ A K FE  + R+  +++
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           T+I   +       A+ ++ +                        DP           K+
Sbjct: 296 TMIAALSHGGRIDAAIAVYER------------------------DP----------VKS 321

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           + C       +TA+I   A+CG ++ A  +F  +       +W+++I+GY + G +  A+
Sbjct: 322 IAC-------RTALITGLAQCGRIDDARILFEQIP-EPIVVSWNALITGYMQNGMVNEAK 373

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LFD+M  R+ +SW  MI+GY+Q G   +AL L  ++   G+ P   ++ ++  AC  + 
Sbjct: 374 ELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIV 433

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL+ G ++H   ++ V    N F   A+I MY KC +++ A  VF ++    K +  +NS
Sbjct: 434 ALETGTQVHSLAVK-VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT--KDIVSWNS 490

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
            ++ L Q+ L + +   F  M    L  D V++ T++ A +H     E    F++M 
Sbjct: 491 FLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 161/336 (47%), Gaps = 12/336 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L+ +   C++++ A Q+  ++V   +   +S +   SF A     + L  +R  F  +
Sbjct: 458 NALITMYGKCRNMEYARQVFSRMVTKDI---VSWN---SFLAALVQNDLLDEARNTFDNM 511

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + +   W T++  Y+ ++   EA+  + +M  +  + PN+     +L  C  L + K G
Sbjct: 512 LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKIG 570

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH   IK G++ +L + NALI  Y   G   ++ ++F+    RD+ ++NT+I GYAQ 
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQH 629

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ +++ M+ + + P+  TFV + +AC+       G +F   + ++ G       
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLFDQM 305
               ++++  + G +  AE+    M +   T  WS+++         E   RA +   ++
Sbjct: 690 Y-ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRI 748

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +  +  ++  + + YS +G + +  E+   M+  G+
Sbjct: 749 EPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGV 784



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 50/278 (17%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           S+ I    R G++  AR++FD M +RD+++W +MIS Y   G    A +L+  +    + 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
              + +        G G L  G+ L  + + + +  RN     A+I  Y + G I  A  
Sbjct: 98  TGAILL-------SGYGRL--GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 403 VFYKIPKNLKTVSLFNSIISG----------------------------------LAQHG 428
           +F  +P   + VS +NS+++G                                  +  HG
Sbjct: 149 LFDAMPS--RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG 206

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               +  +F +M   GL PD   F + L A    G ++  +      L  G +  +    
Sbjct: 207 ---KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGT 263

Query: 489 CMVDLLARDGR-LDEAYGLIQSMPYDANSVIWRALLAA 525
            ++++ +RD   LD A    +SM  + N   W  ++AA
Sbjct: 264 AILNVYSRDTSVLDTAIKFFESM-IERNEYTWSTMIAA 300


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/657 (36%), Positives = 365/657 (55%), Gaps = 17/657 (2%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
            F  +   N + W+T++   S       A+ +Y     K I           L  C R+ 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITG--LAQCGRID 339

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +        + +   E  +   NALI  Y   G +N A ++F+    R+ +S+  +I 
Sbjct: 340 DARI-------LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ      AL L +++  S + P   +  ++F AC+ +     G Q H++  K +GC 
Sbjct: 393 GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK-VGC- 450

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N     A+I MY KC  M  A +VFS M ++K   +W+S ++   +   ++ AR  FD
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFD 509

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M  RD VSWT +IS Y+     ++A+  F  M      P+   +  +L  C  LGA   
Sbjct: 510 NMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKI 569

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+++H   I+ +     + +  A+I MY KCG  D+   +F  + +  + +  +N+II+G
Sbjct: 570 GQQIHTVAIK-LGMDSELIVANALISMYFKCGCADSR-RIFDLMEE--RDIFTWNTIITG 625

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
            AQHGLG  +I +++ ME  G+ P+ VTFV +L ACSH GLV+EG +FF+SM  +YG+ P
Sbjct: 626 YAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTP 685

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
             EHY CMVDLL R G +  A   I  MP + ++VIW ALL AC++H+NA+IG+ A +KL
Sbjct: 686 LPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKL 745

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
             +EP +  +YV+LSN+ +    W E  +VRK+M   G+ K PG S+ +    +H F+  
Sbjct: 746 FRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTG 805

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
            K H Q +EI   L+++   LK+ GYVP+T  V+ D+DEE+KE+ + YHSEKLA+A+ L+
Sbjct: 806 DKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLL 865

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +     I+I KNLRICGDCH   K +S + +R+I +RD  RFH F+ G+CSC DFW
Sbjct: 866 ATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 191/371 (51%), Gaps = 26/371 (7%)

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +  A +VF+    RD++++N++I+ Y     P  A    R + D+    +  T   +
Sbjct: 47  LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA----RDLYDAISGGNMRTGAIL 102

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            S        R+G+   A    + G +  N +   A+I+ Y + G + MA R+F  M  S
Sbjct: 103 LSGYG-----RLGRVLEARRVFD-GMLERNTVAWNAMISCYVQNGDITMARRLFDAMP-S 155

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           +  ++W+SM++GY    ++  AR LF++M +R+LVSWT MISGY ++    +A ++F KM
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G+ PD+    + L A  GLG LD  + L    ++   F R++ + TA++++Y++  S
Sbjct: 216 HREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALK-TGFERDVVIGTAILNVYSRDTS 274

Query: 397 I-DTALSVFYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           + DTA+  F   I +N  T   ++++I+ L+  G  + +IAV+    +  +       +T
Sbjct: 275 VLDTAIKFFESMIERNEYT---WSTMIAALSHGGRIDAAIAVYERDPVKSIACR-TALIT 330

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
            L  C   G +++ +  FE +     +P +  +  ++    ++G ++EA  L   MP+  
Sbjct: 331 GLAQC---GRIDDARILFEQI----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPF-R 382

Query: 515 NSVIWRALLAA 525
           N++ W  ++A 
Sbjct: 383 NTISWAGMIAG 393



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 196/417 (47%), Gaps = 51/417 (12%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   N+  W  ++ GY R ++  +A  ++  M  +G++ P+   F   L++  
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL-PDQSNFASALSAVK 235

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYN 179
            L +      +    +K G E D+ I  A+++ YS     ++ A K FE  + R+  +++
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           T+I   +       A+ ++ +                        DP           K+
Sbjct: 296 TMIAALSHGGRIDAAIAVYER------------------------DP----------VKS 321

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           + C       +TA+I   A+CG ++ A  +F  +       +W+++I+GY + G +  A+
Sbjct: 322 IAC-------RTALITGLAQCGRIDDARILFEQIP-EPIVVSWNALITGYMQNGMVNEAK 373

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LFD+M  R+ +SW  MI+GY+Q G   +AL L  ++   G+ P   ++ ++  AC  + 
Sbjct: 374 ELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIV 433

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL+ G ++H   ++ V    N F   A+I MY KC +++ A  VF ++    K +  +NS
Sbjct: 434 ALETGTQVHSLAVK-VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT--KDIVSWNS 490

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
            ++ L Q+ L + +   F  M    L  D V++ T++ A +H     E    F++M 
Sbjct: 491 FLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 161/336 (47%), Gaps = 12/336 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L+ +   C++++ A Q+  ++V   +   +S +   SF A     + L  +R  F  +
Sbjct: 458 NALITMYGKCRNMEYARQVFSRMVTKDI---VSWN---SFLAALVQNDLLDEARNTFDNM 511

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + +   W T++  Y+ ++   EA+  + +M  +  + PN+     +L  C  L + K G
Sbjct: 512 LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKIG 570

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            QIH   IK G++ +L + NALI  Y   G   ++ ++F+    RD+ ++NT+I GYAQ 
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQH 629

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A+ +++ M+ + + P+  TFV + +AC+       G +F   + ++ G       
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLFDQM 305
               ++++  + G +  AE+    M +   T  WS+++         E   RA +   ++
Sbjct: 690 Y-ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRI 748

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +  +  ++  + + YS +G + +  E+   M+  G+
Sbjct: 749 EPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGV 784



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 50/278 (17%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           S+ I    R G++  AR++FD M +RD+++W +MIS Y   G    A +L+  +    + 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
              + +        G G L  G+ L  + + + +  RN     A+I  Y + G I  A  
Sbjct: 98  TGAILL-------SGYGRL--GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 403 VFYKIPKNLKTVSLFNSIISG----------------------------------LAQHG 428
           +F  +P   + VS +NS+++G                                  +  HG
Sbjct: 149 LFDAMPS--RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG 206

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
               +  +F +M   GL PD   F + L A    G ++  +      L  G +  +    
Sbjct: 207 ---KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGT 263

Query: 489 CMVDLLARDGR-LDEAYGLIQSMPYDANSVIWRALLAA 525
            ++++ +RD   LD A    +SM  + N   W  ++AA
Sbjct: 264 AILNVYSRDTSVLDTAIKFFESM-IERNEYTWSTMIAA 300


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/585 (40%), Positives = 355/585 (60%), Gaps = 49/585 (8%)

Query: 130 QIHCHIIKFGLEF-DLFIRNALIHFYSIF----GYINNAHKVFEG-SLARDLVSYNTLIN 183
           QIH   I+ G+   D  +   LI FY +       ++ AHKVF       ++  +NTLI 
Sbjct: 35  QIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIR 93

Query: 184 GYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           GYA++     A  L+R+M+ S  ++PD  T+  +  A T + D R+G+  H+VV ++   
Sbjct: 94  GYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS--G 151

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
            GS + ++ +++++YA CG                                 +  A ++F
Sbjct: 152 FGSLIYVQNSLLHLYANCG--------------------------------DVASAYKVF 179

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+M ++DLV+W ++I+G+++ G   +AL L+ +M S GI PD  T+V++L AC  +GAL 
Sbjct: 180 DKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALT 239

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPKNLKTVSLFNSII 421
            GKR+H  Y+  V   RN+  +  ++D+YA+CG ++ A ++F + + KN  +VS + S+I
Sbjct: 240 LGKRVHV-YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--SVS-WTSLI 295

Query: 422 SGLAQHGLGETSIAVFREME-LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
            GLA +G G+ +I +F+ ME   GL P  +TFV +L ACSH G+V+EG ++F  M   Y 
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I+P++EH+GCMVDLLAR G++ +AY  I+SMP   N VIWR LL AC +H ++ + E A 
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
            ++L LEP+H   YVLLSNM A   RW + +++RK M   G++K PG S +E    +H F
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAF 659
           L   KSHPQ+  I   LK+MT +L+S GYVP    V  DV+EEEKE  V YHSEK+A+AF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535

Query: 660 GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
            LI++  +  I + KNLR+C DCHLA KL+S++Y REI+VRD  R
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 239/461 (51%), Gaps = 70/461 (15%)

Query: 11  LLALLESCKSLKQAL---------QIHGQIVHSGLNHHISSSQL---ISFFALS-GCKNG 57
           LL ++E C +L Q           QIH   +  G++  IS ++L   + F+ +S      
Sbjct: 11  LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVS--ISDAELGKHLIFYLVSLPSPPP 68

Query: 58  LFRSRILFSQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           +  +  +FS+I+ P N+FIWNTL+RGY+   +   A  LY  M   G+V P+  T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +   ++  + G  IH  +I+ G    ++++N+L+H Y+  G + +A+KVF+    +DLV
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           ++N++ING+A+  +P  AL L+ +M    I+PD FT V++ SAC ++    +GK+ H  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K +G +  N+     ++++YA+CG +  A+ +F  M + K++ +W+S+I G        
Sbjct: 249 IK-VG-LTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLA------ 299

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGF-SQALELFGKMESL-GIHPDEVTMVAVLRA 354
                                     V GF  +A+ELF  MES  G+ P E+T V +L A
Sbjct: 300 --------------------------VNGFGKEAIELFKYMESTEGLLPCEITFVGILYA 333

Query: 355 CVGLGALDFG----KRLHQQY-IENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           C   G +  G    +R+ ++Y IE  +  FG        ++D+ A+ G +  A      +
Sbjct: 334 CSHCGMVKEGFEYFRRMREEYKIEPRIEHFG-------CMVDLLARAGQVKKAYEYIKSM 386

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           P     V ++ +++     H  G++ +A F  ++++ L+P+
Sbjct: 387 PMQPNVV-IWRTLLGACTVH--GDSDLAEFARIQILQLEPN 424


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 363/625 (58%), Gaps = 52/625 (8%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           +P   T+  ++ SC R +S   G  +H H+I  G + D F+   LI+ YS    I+NA K
Sbjct: 75  NPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARK 134

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--- 222
           VF+ +  R +  +N L             L L+R+M    +  D FT+  +  AC     
Sbjct: 135 VFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEA 194

Query: 223 -----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
                LN    G++ H  + ++ G  G ++ + T +++MYA+ G +  A RV        
Sbjct: 195 FVSLLLN----GREIHGHILRH-GFEG-HVHIMTTLLDMYARFGCVLNASRV-------- 240

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM- 336
                                   FDQM  +++VSW+AMI+ YS+ G   +ALELF KM 
Sbjct: 241 ------------------------FDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMM 276

Query: 337 -ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
            E+  + P+ VTMV+VL+AC  L AL+ GK +H  YI        + + +A++ +YA+CG
Sbjct: 277 LENQDLLPNSVTMVSVLQACAALAALEQGKLMHG-YILRRGLDSILPVVSALVTVYARCG 335

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
           +++    VF ++ K  + V  +NS+IS    HG G  +I +F+EM   GL P  ++FV+V
Sbjct: 336 NLELGHRVFERMEK--RDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSV 393

Query: 456 LCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACSH GLVEEGK  FESM+  + I P +EHY CMVDLL R  RLDEA  +I  M  + 
Sbjct: 394 LGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEP 453

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
              +W +LL +CR+H N ++ E A  +L +LEP +  +YVLL+++ AE   W E ++V+ 
Sbjct: 454 GPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKM 513

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           L++  G+QK PG S IE    ++ F++  + +PQ +++  +L  ++M++K  GYVP+T  
Sbjct: 514 LLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKV 573

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V++D+D EEKE +V  HSEKLALAFGLINS+  ETIRITKNLR+C DCH   K +S+   
Sbjct: 574 VLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFAN 633

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REI+VRD  RFHLF+ G CSC D+W
Sbjct: 634 REILVRDVNRFHLFQDGVCSCGDYW 658



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 199/406 (49%), Gaps = 58/406 (14%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFA-LSGCKNGLFRSRILFSQI 68
           L+ SC    SL Q + +H  ++H G +     +++LI+ ++ L    N    +R +F + 
Sbjct: 84  LILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDN----ARKVFDKT 139

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS- 127
               I++WN L R  + +   +E L LY  M   G+ S + FT+ +VL +C    +F S 
Sbjct: 140 RKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPS-DRFTYTYVLKACVASEAFVSL 198

Query: 128 ---GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G +IH HI++ G E  + I   L+  Y+ FG + NA +VF+    +++VS++ +I  
Sbjct: 199 LLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIAC 258

Query: 185 YAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           Y++  +P  AL LFRKM  ++  + P++ T V++  AC  L     GK  H  + +    
Sbjct: 259 YSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRR--G 316

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           + S + + +A++ +YA+CG + +  RVF  M   +   +W+S+IS Y             
Sbjct: 317 LDSILPVVSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYG------------ 363

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                         I G+ +     +A+++F +M   G+ P  ++ V+VL AC   G ++
Sbjct: 364 --------------IHGFGR-----KAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVE 404

Query: 363 FGKRLHQQYIENVVFGRNIFLTT----AVIDMYAKCGSIDTALSVF 404
            GK L     E++V G  IF +      ++D+  +   +D A  + 
Sbjct: 405 EGKVL----FESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKII 446



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 6/263 (2%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           +IHG I+  G   H+   + L+  +A  GC   +  +  +F Q+   N+  W+ ++  YS
Sbjct: 204 EIHGHILRHGFEGHVHIMTTLLDMYARFGC---VLNASRVFDQMPVKNVVSWSAMIACYS 260

Query: 85  RSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           ++  P EAL L+  M L    + PN+ T   VL +CA L++ + G  +H +I++ GL+  
Sbjct: 261 KNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSI 320

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
           L + +AL+  Y+  G +   H+VFE    RD+VS+N+LI+ Y        A+ +F++M D
Sbjct: 321 LPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMID 380

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
             + P   +FV++  AC+       GK     + +      S +     ++++  +   +
Sbjct: 381 QGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPS-VEHYACMVDLLGRANRL 439

Query: 264 NMAERVFSTMGMSKSTAAWSSMI 286
           + A ++   M +      W S++
Sbjct: 440 DEAAKIIDDMRIEPGPKVWGSLL 462


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 349/609 (57%), Gaps = 44/609 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           ++  C  L  FK   Q+H  I+KFGL  D F  ++++   ++  +  ++ A  +F+    
Sbjct: 38  LVKKCKSLEEFK---QVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDE 94

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                +NT+I GY        A++L+  M    ++PD FT+  +  AC  L   + G Q 
Sbjct: 95  PTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQI 154

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H  V+K LG +  ++ ++ ++INMY KC                                
Sbjct: 155 HGHVFK-LG-LEDDVYVQNSLINMYGKCR------------------------------- 181

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPDEVTMVAV 351
             IE +  +F +M+Q+ + SW+A+I+ ++ +  + + L LF  M   G    +E  +V V
Sbjct: 182 -DIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNV 240

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  LGA   G+  H   ++N+    N+ + T+++DMY KCGS+   L +F  + +  
Sbjct: 241 LSACTHLGAFHLGRCAHGSLLKNIT-ELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTR-- 297

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K    ++ IISGL  HG G  ++ +F EM   GL+PD VT+V+VL ACSH GLV+EG   
Sbjct: 298 KNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDL 357

Query: 472 FESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F+ M   Y I+P M+HYGCMVDL  R G L+EA+ L+QSMP  AN V+WR+LL+AC++H 
Sbjct: 358 FDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHD 417

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N K+GEIA + L  L   + + Y++LSNM A   +WE A ++R  M + G+ + PG+S +
Sbjct: 418 NLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLV 477

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E    +++F++  KS+ ++  I  M+  M  +L+  GY+P+T QV+ DVDEEEK   +  
Sbjct: 478 EVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKG 537

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HS+KLA+AF LI++     IRI +NLR+C DCH   KL+S IY REI VRD  RFH FK 
Sbjct: 538 HSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKD 597

Query: 711 GNCSCMDFW 719
           GNCSC D+W
Sbjct: 598 GNCSCRDYW 606



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 213/427 (49%), Gaps = 42/427 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L L++ CKSL++  Q+H QI+  GL      SS +++  ALS   N +  +  +F Q+D 
Sbjct: 36  LCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDW-NSMDYACSIFQQLDE 94

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P  F +NT++RGY  + + + A+ LY  ML +  V P+NFT+P VL +CARL+  + G Q
Sbjct: 95  PTTFDFNTMIRGYVNNMNFENAIYLYNDMLQRE-VEPDNFTYPVVLKACARLAVIQEGMQ 153

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH H+ K GLE D++++N+LI+ Y     I  +  +F     + + S++ +I  +A +  
Sbjct: 154 IHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAM 213

Query: 191 PCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               L LF  M ++ C + +    V + SACT L    +G+  H  + KN+     N+ +
Sbjct: 214 WWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNI--TELNVAV 271

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            T++++MY KC                                G +++   LF  M +++
Sbjct: 272 MTSLMDMYVKC--------------------------------GSLQKGLCLFQNMTRKN 299

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            +S++ +ISG    G   QAL++F +M   G+ PD+VT V+VL AC   G +D G  L  
Sbjct: 300 QLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFD 359

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG- 428
           +          +     ++D+  + G ++ A  +   +P     V L+ S++S    H  
Sbjct: 360 KMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDV-LWRSLLSACKVHDN 418

Query: 429 --LGETS 433
             LGE +
Sbjct: 419 LKLGEIA 425


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 356/609 (58%), Gaps = 38/609 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F  +L  CAR  +       H   ++  L+ D+ + N LI+ YS  G++  A +VF+G L
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R LVS+NT+I  Y + +    AL +F +M++   +   FT  ++ SAC    D    K+
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H +  K    +  N+ + TA++++YAKCG++N                           
Sbjct: 186 LHCLSMKT--SLDLNLYVGTALLDLYAKCGMIN--------------------------- 216

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
                 A Q+F+ M  +  V+W++M++GY Q   + +AL L+ + + + +  ++ T+ +V
Sbjct: 217 -----DAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSV 271

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           + AC  L AL  GK++H   I    FG N+F+ ++ +DMYAKCGS+  +  +F ++ +  
Sbjct: 272 ICACSNLAALIEGKQMHA-VIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE-- 328

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K + L+N+IISG A+H   +  + +F +M+  G+ P+ VTF ++L  C H GLVEEG++F
Sbjct: 329 KNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF 388

Query: 472 FESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F+ M   YG+ P + HY CMVD+L R G L EAY LI+S+P++  + IW +LLA+CR+ +
Sbjct: 389 FKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCK 448

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N ++ E+A +KL +LEP++  ++VLLSN+ A   +WEE  + RKL+ D  ++K  G S+I
Sbjct: 449 NLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWI 508

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           +    +H F   + SHP+ +EI  ML ++ ++L+  GY P+    + DV+  +KE ++  
Sbjct: 509 DIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQ 568

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLAL FGL+      T+RI KNLRIC DCH   K  S   RR I+VRDA RFH F  
Sbjct: 569 HSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSD 628

Query: 711 GNCSCMDFW 719
           G+CSC +FW
Sbjct: 629 GHCSCGEFW 637



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 206/422 (48%), Gaps = 43/422 (10%)

Query: 5   VLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR- 60
           V++ S  + +L+ C    ++ +A   HG+ +   L   ++ S ++   A S C  G    
Sbjct: 60  VVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVL-INAYSKC--GFVEL 116

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F  +   ++  WNT++  Y+R+    EAL ++  M ++G    + FT   VL++C 
Sbjct: 117 ARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGF-KFSEFTISSVLSACG 175

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                    ++HC  +K  L+ +L++  AL+  Y+  G IN+A +VFE    +  V++++
Sbjct: 176 ANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSS 235

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           ++ GY Q K    AL L+R+ Q   ++ + FT  ++  AC+ L     GKQ HAV+ K+ 
Sbjct: 236 MVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKS- 294

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
              GSN+ + ++ ++MYAKCG +  +  +FS +   K+   W+++ISG+ +  + +    
Sbjct: 295 -GFGSNVFVASSAVDMYAKCGSLRESYIIFSEV-QEKNIELWNTIISGFAKHARPKEVMI 352

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF++M Q                                G+HP+EVT  ++L  C   G 
Sbjct: 353 LFEKMQQD-------------------------------GMHPNEVTFSSLLSVCGHTGL 381

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G+R  +          N+   + ++D+  + G +  A  +   IP    T S++ S+
Sbjct: 382 VEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFE-PTASIWGSL 440

Query: 421 IS 422
           ++
Sbjct: 441 LA 442


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 384/714 (53%), Gaps = 44/714 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           S+LL++L      K    IHG +V  G +  +   + L+  +A +G       + ++F Q
Sbjct: 265 STLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRS---VEANLVFKQ 321

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   ++  WN+LM  +       +AL L  SM+S G  S N  TF   L +C     F+ 
Sbjct: 322 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG-KSVNYVTFTSALAACFTPDFFEK 380

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++  GL ++  I NAL+  Y   G ++ + +V      RD+V++N LI GYA+
Sbjct: 381 GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAE 440

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSN 246
            ++P  AL  F+ M+   +  +  T V++ SAC    D    GK  HA +        S+
Sbjct: 441 DEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVS--AGFESD 498

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +K ++I MYAKCG                                 +  ++ LF+ +D
Sbjct: 499 EHVKNSLITMYAKCG--------------------------------DLSSSQDLFNGLD 526

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            R++++W AM++  +  G   + L+L  KM S G+  D+ +    L A   L  L+ G++
Sbjct: 527 NRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ 586

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH   ++ + F  + F+  A  DMY+KCG I   + +    P   +++  +N +IS L +
Sbjct: 587 LHGLAVK-LGFEHDSFIFNAAADMYSKCGEIGEVVKML--PPSVNRSLPSWNILISALGR 643

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           HG  E   A F EM  MG+KP  VTFV++L ACSHGGLV++G  +++ +  ++G++P +E
Sbjct: 644 HGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIE 703

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           H  C++DLL R GRL EA   I  MP   N ++WR+LLA+C++H N   G  A + L  L
Sbjct: 704 HCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKL 763

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           EP+  + YVL SNM A T RWE+   VRK M    I+K    S+++    +  F    ++
Sbjct: 764 EPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRT 823

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQT EI   L+D+   +K +GYV +T Q + D DEE+KE  +  HSE+LALA+ L+++ 
Sbjct: 824 HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTP 883

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              T+RI KNLRIC DCH  +K +S +  R I++RD  RFH F++G CSC D+W
Sbjct: 884 EGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 235/517 (45%), Gaps = 56/517 (10%)

Query: 21  LKQALQIHGQIVHSGL--NHHISSS--QLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
            ++ +Q+HG +  SGL  + ++S++   L   + L  C      SR +F ++ + N+  W
Sbjct: 75  FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC------SRKVFEEMPDRNVVSW 128

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +LM GYS    P+E + +Y  M  +G V  N  +   V++SC  L     G QI   ++
Sbjct: 129 TSLMVGYSDKGEPEEVIDIYKGMRGEG-VGCNENSMSLVISSCGLLKDESLGRQIIGQVV 187

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ---VKEPCP 193
           K GLE  L + N+LI      G ++ A+ +F+    RD +S+N++   YAQ   ++E   
Sbjct: 188 KSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFR 247

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
              L R+  D   + ++ T   + S    ++  + G+  H +V K               
Sbjct: 248 IFSLMRRFHD---EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK--------------- 289

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
                              MG        ++++  Y   G+   A  +F QM  +DL+SW
Sbjct: 290 -------------------MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 330

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            ++++ +   G    AL L   M S G   + VT  + L AC      + G+ LH   + 
Sbjct: 331 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVV 390

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           + +F  N  +  A++ MY K G +  +  V  ++P+  + V  +N++I G A+    + +
Sbjct: 391 SGLF-YNQIIGNALVSMYGKIGEMSESRRVLLQMPR--RDVVAWNALIGGYAEDEDPDKA 447

Query: 434 IAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           +A F+ M + G+  + +T V+VL AC   G L+E GK     +++ G +        ++ 
Sbjct: 448 LAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLIT 507

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + A+ G L  +  L   +  + N + W A+LAA   H
Sbjct: 508 MYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 543



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 210/469 (44%), Gaps = 46/469 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   N   WNT+M G  R     E +  +  M   GI  P++F    ++ +C 
Sbjct: 11  ARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGI-KPSSFVIASLVTACG 69

Query: 121 RLSS-FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           R  S F+ G Q+H  + K GL  D+++  A++H Y ++G ++ + KVFE    R++VS+ 
Sbjct: 70  RSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWT 129

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +L+ GY+   EP   + +++ M+   +  +  +   + S+C  L D  +G+Q    V K+
Sbjct: 130 SLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS 189

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              + S + ++ ++I+M    G ++ A  +F  M   + T +W+S+ + Y + G IE + 
Sbjct: 190 --GLESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIEESF 246

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           ++F  M +                                  H DEV    V      LG
Sbjct: 247 RIFSLMRR---------------------------------FH-DEVNSTTVSTLLSVLG 272

Query: 360 ALD---FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            +D   +G+ +H   ++ + F   + +   ++ MYA  G    A  VF ++P   K +  
Sbjct: 273 HVDHQKWGRGIHGLVVK-MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPT--KDLIS 329

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +NS+++     G    ++ +   M   G   + VTF + L AC      E+G+     ++
Sbjct: 330 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 389

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             G+         +V +  + G + E+  ++  MP   + V W AL+  
Sbjct: 390 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR-RDVVAWNALIGG 437



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 178/373 (47%), Gaps = 39/373 (10%)

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           Y+ FG +  A  +F+    R+ VS+NT+++G  +V      +  FRKM D  I+P +F  
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 214 VAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
            ++ +AC       R G Q H  V K+ G + S++ + TA++++Y   GL++ +      
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKS-GLL-SDVYVSTAILHLYGVYGLVSCS------ 113

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                     R++F++M  R++VSWT+++ GYS  G   + +++
Sbjct: 114 --------------------------RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 147

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           +  M   G+  +E +M  V+ +C  L     G+++  Q +++ +  + + +  ++I M  
Sbjct: 148 YKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESK-LAVENSLISMLG 206

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
             G++D A  +F ++ +   T+S +NSI +  AQ+G  E S  +F  M     + +  T 
Sbjct: 207 SMGNVDYANYIFDQMSER-DTIS-WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTV 264

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            T+L    H    + G+     ++  G    +     ++ + A  GR  EA  + + MP 
Sbjct: 265 STLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP- 323

Query: 513 DANSVIWRALLAA 525
             + + W +L+A+
Sbjct: 324 TKDLISWNSLMAS 336


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 398/714 (55%), Gaps = 47/714 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCK-NGLFRSRILFS 66
           SS+L       S+++   IHG I   G+    I ++ L+S +    CK NGL   R +F 
Sbjct: 279 SSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY----CKFNGLIDGRRIFD 334

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   +   WNT++ GYS+    +E++ L+  M+++    P+  T   +L +C  L   +
Sbjct: 335 KMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLE 392

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G  +H ++I  G E D    N LI+ Y+  G +  + +VF G   +D VS+N++IN Y 
Sbjct: 393 FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYI 452

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      A+ LF KM  + ++PD+ T+V + S  T+L D  +GK+ H  + K +G   SN
Sbjct: 453 QNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK-MG-FNSN 509

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +++   +++MYAKC                                G++  + ++F+ M 
Sbjct: 510 IVVSNTLVDMYAKC--------------------------------GEMGDSLKVFENMK 537

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            RD+++W  +I+        +  L +  +M + G+ PD  TM+++L  C  L A   GK 
Sbjct: 538 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 597

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   I  +    ++ +   +I+MY+KCGS+  +  VF K+ K  K V  + ++IS    
Sbjct: 598 IHG-CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF-KLMKT-KDVVTWTALISACGM 654

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           +G G+ ++  F EME  G+ PD V FV ++ ACSH GLVEEG  +F  M  +Y I+P++E
Sbjct: 655 YGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIE 714

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY C+VDLL+R   LD+A   I SMP   +S IW ALL+ACR+  + +I +   +++++L
Sbjct: 715 HYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIEL 774

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            PD   +YVL+SN+ A   +W++ R +RK +   G++K PG S++E    ++ F    K 
Sbjct: 775 NPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKF 834

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
             Q +E+  +L  +   +   GY+ N   V+ D+DE+EK  ++  HSE+LA+AFGL+N++
Sbjct: 835 SEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTK 894

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               +++ KNLR+C DCH   K +S+I +RE++VRDA RFH+FK G CSC D+W
Sbjct: 895 PGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/528 (27%), Positives = 268/528 (50%), Gaps = 44/528 (8%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+   L S  +  Q  ++H  I+  GL+H  I S++LI+ +A        F    L S 
Sbjct: 76  SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASP 135

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
             + N++ WN+++R  + +    EAL LY S   +  + P+ +TFP V+N+CA L  F+ 
Sbjct: 136 --SNNVYXWNSIIRALTHNGLFSEALSLY-SETQRIRLQPDTYTFPSVINACAGLLDFEM 192

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              IH  ++  G   DL+I NALI  Y  F  ++ A KVFE    RD+VS+N+LI+GY  
Sbjct: 193 AKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 252

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL ++ + ++  + PD++T  ++  AC  L     G   H ++ K +G +  ++
Sbjct: 253 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEK-IG-IKKDV 310

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++   +++MY K   +    R+F  M + +   +W++MI GY+                 
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDKMVL-RDAVSWNTMICGYS----------------- 352

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                         QVG + ++++LF +M +    PD +T+ ++L+AC  LG L+FGK +
Sbjct: 353 --------------QVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYV 397

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  Y+    +  +   +  +I+MYAKCG++  +  VF  + K   +VS +NS+I+   Q+
Sbjct: 398 H-DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM-KCKDSVS-WNSMINVYIQN 454

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHY 487
           G  + ++ +F+ M+   +KPD VT+V +L   +  G +  GK+    +   G    +   
Sbjct: 455 GSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS 513

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             +VD+ A+ G + ++  + ++M    + + W  ++A+C    +  +G
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKA-RDIITWNTIIASCVHSEDCNLG 560



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 221/462 (47%), Gaps = 62/462 (13%)

Query: 115 VLNSCARLSSFKSGC-------------QIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           VL+ C+R + F S               ++H  II  GL   +     LI  Y+ F    
Sbjct: 65  VLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPT 124

Query: 162 NAHKVFE-GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           ++  VF   S + ++  +N++I           AL L+ + Q   +QPD +TF ++ +AC
Sbjct: 125 SSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC 184

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L D  + K  H  V   +G  GS++ +  A+I+MY                       
Sbjct: 185 AGLLDFEMAKSIHDRVLX-MG-FGSDLYIGNALIDMYC---------------------- 220

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
                     R   +++AR++F++M  RD+VSW ++ISGY+  G +++ALE++ +  +LG
Sbjct: 221 ----------RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 270

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PD  TM +VLRAC GLG+++ G  +H   IE +   +++ +   ++ MY K   +   
Sbjct: 271 VVPDSYTMSSVLRACGGLGSVEEGDIIH-GLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 329

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             +F K+   L+    +N++I G +Q GL E SI +F EM +   KPD +T  ++L AC 
Sbjct: 330 RRIFDKMV--LRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACG 386

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
           H G +E GK   + M+  G +        ++++ A+ G L  +  +   M    +SV W 
Sbjct: 387 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC-KDSVSWN 445

Query: 521 ALLAACRLHRNAKIGEIAGQKLL-----DLEPDHGAHYVLLS 557
           +++      +N    E    KL      D++PD   + +LLS
Sbjct: 446 SMINV--YIQNGSFDE--AMKLFKMMKTDVKPDSVTYVMLLS 483


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/661 (36%), Positives = 375/661 (56%), Gaps = 41/661 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  W  LM G+ ++ +P E+L+L++ M   G V PN+FTF   L +C  L+
Sbjct: 29  VFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSG-VKPNDFTFSTNLKACGLLN 87

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G QIH   +K G +    + N++I  YS  G IN A  +FE    R+L+S+N +I 
Sbjct: 88  GLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIA 147

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY        AL LF+KMQ+     D FTF +   AC++L   + G Q HA +       
Sbjct: 148 GYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLY 207

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N  +  A+I++Y KCG + MA RVFS +   K   +W+++I GY +EG +  + +LF 
Sbjct: 208 SVNTAVAGALIDLYVKCGKLFMARRVFSHI-EEKHVISWTALILGYAQEGNLAESMELFR 266

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           Q+ +  +           QV GF     +   M  +G+  D                +  
Sbjct: 267 QLRESSI-----------QVDGF-----ILSSM--MGVFAD-------------FALVQQ 295

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK++H   I+ V  G +I +  +++DMY KCG I+ A  +F ++P   + V  +  +I+G
Sbjct: 296 GKQMHAFAIK-VPSGVDISVCNSILDMYLKCGMINEAERLFSEMPA--RNVISWTVMITG 352

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKP 482
             +HGLG+ +I +F EM+L   +PD VT++ VL  CSH GLVE+G+++F  + +Y GIK 
Sbjct: 353 YGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKA 412

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           ++EHY CMVDLL R GRL EA  L+ SMP +AN  IW+ LL+ACR+H + ++G+  G  L
Sbjct: 413 RVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGIL 472

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
           L L+ ++  +YV++SN+ A+   W+E  ++R+L+    ++K  G S++E +  +H F   
Sbjct: 473 LRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGG 532

Query: 603 KKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             +HP T++I  +LK+M  ++K   GYV      + DV+EE K   +  HSEKLA+   L
Sbjct: 533 DDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLAL 592

Query: 662 INS---RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           +       ++ IR+ KNLR+CGDCH   K LS+I R   +VRDA RFH F+ G CSC D+
Sbjct: 593 VCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDY 652

Query: 719 W 719
           W
Sbjct: 653 W 653



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 198/423 (46%), Gaps = 44/423 (10%)

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           G  FDL + N LI  Y   G +  A  VF+  L R++VS+  L+ G+ Q   P  +L LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML--LKTAVINM 256
            KM  S ++P+ FTF     AC  LN   IG+Q H +  K     G +M+  +  ++I+M
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKT----GFDMVNVVGNSIIDM 117

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           Y+KCG                                +I  A  +F+ M  R+L+SW AM
Sbjct: 118 YSKCG--------------------------------RINEAACMFEVMPVRNLISWNAM 145

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE-NV 375
           I+GY+  G   +AL LF KM+ +G   DE T  + L+AC  LGA+  G ++H   I    
Sbjct: 146 IAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGF 205

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
           ++  N  +  A+ID+Y KCG +  A  VF  I +  K V  + ++I G AQ G    S+ 
Sbjct: 206 LYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE--KHVISWTALILGYAQEGNLAESME 263

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
           +FR++    ++ DG    +++   +   LV++GKQ     +       +     ++D+  
Sbjct: 264 LFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYL 323

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHY 553
           + G ++EA  L   MP   N + W  ++     H   K  I      +L   EPD   + 
Sbjct: 324 KCGMINEAERLFSEMPA-RNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYL 382

Query: 554 VLL 556
            +L
Sbjct: 383 AVL 385



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 6/253 (2%)

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           MG        + +I  Y + G++  A  +FD+M +R++VSWTA++ G+ Q G   ++L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F KM   G+ P++ T    L+AC  L  LD G+++H   ++      N+ +  ++IDMY+
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNV-VGNSIIDMYS 119

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCG I+ A  +F  +P  ++ +  +N++I+G    G  E ++ +F++M+ +G   D  TF
Sbjct: 120 KCGRINEAACMFEVMP--VRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTF 177

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH--YGCMVDLLARDGRLDEAYGLIQSM 510
            + L ACS  G ++EG Q    ++  G    +     G ++DL  + G+L  A  +   +
Sbjct: 178 TSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHI 237

Query: 511 PYDANSVIWRALL 523
             + + + W AL+
Sbjct: 238 E-EKHVISWTALI 249



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 157/328 (47%), Gaps = 14/328 (4%)

Query: 6   LEHSSLLALLESCKSL---KQALQIHGQIVHSGLNHHISSS---QLISFFALSGCKNGLF 59
           L+  +  + L++C  L   K+  QIH  ++  G  + ++++    LI  +   G    LF
Sbjct: 172 LDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCG---KLF 228

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R +FS I+  ++  W  L+ GY++  +  E++ L+   L +  +  + F    ++   
Sbjct: 229 MARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQ-LRESSIQVDGFILSSMMGVF 287

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A  +  + G Q+H   IK     D+ + N+++  Y   G IN A ++F    AR+++S+ 
Sbjct: 288 ADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWT 347

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I GY +      A+ LF +MQ    +PD  T++A+   C+       G+++ + +   
Sbjct: 348 VMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSY 407

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G + + +     ++++  + G +  A+ +  +M +  +   W +++S     G +E  +
Sbjct: 408 HG-IKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGK 466

Query: 300 Q---LFDQMDQRDLVSWTAMISGYSQVG 324
           +   +  ++D  + V++  M + Y+  G
Sbjct: 467 EVGGILLRLDSENPVNYVMMSNIYADAG 494


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 332/557 (59%), Gaps = 44/557 (7%)

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWL-----FRKMQDSCIQPDAFTFVAMFSACTEL- 223
           S+  D    NTLI  +A    P  +L L     F  M    + P+ FTF  +  AC  L 
Sbjct: 83  SVPLDAFLANTLIRAHAT--SPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALP 140

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
             P +G Q HA   K  G   ++  +   +I+MY+  G                      
Sbjct: 141 GSPDVGLQAHAAALK-FG-FATDQYVSNTLIHMYSCFG---------------------- 176

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                    G +  AR +FD+M +   V+W+AMI GY + G  S A+ELF +M++ G+  
Sbjct: 177 --------GGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQA 228

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           DEVT++ VL A   LGAL+   R  ++++E    G+++ L  A+ID  AKCG +D A++V
Sbjct: 229 DEVTVIGVLAAATDLGALELA-RWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  + +  ++V  + S+I  LA  G G+ ++ VF EM++ G+ PD V F+ VL ACSH G
Sbjct: 288 FEGMQQ--RSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAG 345

Query: 464 LVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           +V+EG  +F++M + YGI+P++EHYGCMVD+  R G ++ A   +++MP   N VIWR+L
Sbjct: 346 MVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSL 405

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           ++ACR H   ++GE   + LL   P H A+Y++LSN+ A T RW+E  ++R+ M   GI+
Sbjct: 406 VSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIK 465

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PG S +E +G +H F+A  +SHPQ K+I  M+++M  +L+  G++  T +V+ D+DEE
Sbjct: 466 KVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEE 525

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           +KE  + +HSEKLA+AF L+ +     +R+ KNLR+C DCH A K +S++YRREI+VRD 
Sbjct: 526 DKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDR 585

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G+CSC DFW
Sbjct: 586 SRFHRFKDGSCSCKDFW 602



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 174/371 (46%), Gaps = 47/371 (12%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVL----YTSMLSKGIVSPNNFTFPFVLNSCARLS-SFK 126
           + F+ NTL+R ++   SP  +L L    +  ++ +G V PN FTFPF+L +CA L  S  
Sbjct: 87  DAFLANTLIRAHA--TSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPD 144

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSLARDLVSYNTLING 184
            G Q H   +KFG   D ++ N LIH YS F  G++ +A  VF+       V+++ +I G
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y +      A+ LFR+MQ + +Q D  T + + +A T+L    + +     V +    +G
Sbjct: 205 YVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE--GIG 262

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ L  A+I+  AKCG ++ A  VF  M   +S  +W+S+I     EG+ + A ++F++
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGM-QQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
                                          M+  G+ PD+V  + VL AC   G +D G
Sbjct: 322 -------------------------------MKVAGVPPDDVAFIGVLTACSHAGMVDEG 350

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
                           I     ++DM+ + G ++ A+     +P     V ++ S++S  
Sbjct: 351 CGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPV-IWRSLVSAC 409

Query: 425 AQHG---LGET 432
             HG   LGE+
Sbjct: 410 RAHGRLELGES 420



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 129/287 (44%), Gaps = 6/287 (2%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLF--RSRILFSQID 69
           LL++C +L  +  +  Q   + L    ++ Q +S     +  C  G F   +R +F ++ 
Sbjct: 132 LLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMP 191

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W+ ++ GY R     +A+ L+  M + G V  +  T   VL +   L + +   
Sbjct: 192 KESAVTWSAMIGGYVRGGLSSDAVELFREMQANG-VQADEVTVIGVLAAATDLGALELAR 250

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +   + + G+   + + NALI   +  G ++ A  VFEG   R +VS+ ++I+  A   
Sbjct: 251 WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEG 310

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ +F +M+ + + PD   F+ + +AC+       G  +   +    G +   +  
Sbjct: 311 RGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYG-IEPKIEH 369

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
              +++M+ + G++  A     TM +  +   W S++S     G++E
Sbjct: 370 YGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLE 416


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/774 (32%), Positives = 413/774 (53%), Gaps = 103/774 (13%)

Query: 4    LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS- 61
              L  S  L   + C +     Q+H  +  +GL+ H  +S++LI  +A    + G+F S 
Sbjct: 344  FTLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYA----QIGIFESS 399

Query: 62   RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA- 120
            + +F     P+ F+W  L++ Y      +EA+ LY  M+ +     +NF FP VL +C+ 
Sbjct: 400  KRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSG 459

Query: 121  ---------------------------------------------------RLSSFKSGC 129
                                                               RL   K G 
Sbjct: 460  FGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGR 519

Query: 130  QIHCHIIKFGLEFDL-FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H  +I+  ++ +L F+  AL+  Y+  G + + HKVFE    + ++S+NTLI+ + + 
Sbjct: 520  SVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRN 579

Query: 189  KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS-NM 247
             +P  AL LF +MQ   + PD+++  +  SAC  ++  ++G Q H  + K     G+ N 
Sbjct: 580  GQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIK----TGNFND 635

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
             ++ A+I+MYAKCG                                 +  A ++F+++ +
Sbjct: 636  FVQNALIDMYAKCGF--------------------------------VHSANKMFEKIKE 663

Query: 308  RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            + LV+W +MI G+SQ G   +A+ LF +M    +  D++T ++V++AC  LG L+ GK +
Sbjct: 664  KSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWV 723

Query: 368  HQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            H + I   ++G  ++ +L TA+ DMY+KCG +  A  VF ++ +  +++  ++ +I+G  
Sbjct: 724  HHKLI---MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSE--RSIVSWSVMIAGYG 778

Query: 426  QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
             HG    +I++F +M   G+KP+ +TF+ +L ACSH G VEEGK +F SM  +G++P+ +
Sbjct: 779  MHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHD 838

Query: 486  HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            H+ CMVDLL+R G L+ AY +I S+P+ ANS IW ALL  CR+H+   I +   + LLD+
Sbjct: 839  HFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDV 898

Query: 546  EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            +     +Y LLSN+ AE   W++  +VR +M   G++K PG+S IE +  ++RF     S
Sbjct: 899  DTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTS 958

Query: 606  HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            H QTK+I   L++    + +  Y       +    +  KE  V  HSEKLA+AFG+IN+R
Sbjct: 959  HSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTR 1018

Query: 666  SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               T+RI+KNLR+C DCH   K+ S+I  REI++RD  RFH F+ G+CSC D+W
Sbjct: 1019 PGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 371/631 (58%), Gaps = 56/631 (8%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRI 63
           L     ++LL+SCK+ KQ  QI  QI+ +G   N +I+  +L++  A       +  +R 
Sbjct: 36  LLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITP-KLVTICA---TLKRMTYARQ 91

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARL 122
           LF QI +PNI +WN++ RGY++S+S +E + L+  M  KG+ + PN FTFP VL SC ++
Sbjct: 92  LFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQM--KGMDIRPNCFTFPVVLKSCGKI 149

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           ++   G Q+HC +IK G   + F+   LI  YS  G + +A+K+F     R++V++ ++I
Sbjct: 150 NALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMI 209

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           NGY                    +  D  +   +F    E                    
Sbjct: 210 NGY-------------------ILSADLVSARRLFDLAPE-------------------- 230

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              +++L   +++ Y + G M  A ++F  M  ++    W++++ GY   G +E    LF
Sbjct: 231 --RDVVLWNIMVSGYIEGGDMVEARKLFHEMP-NRDVMFWNTVLKGYATNGNVEALEGLF 287

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGAL 361
           ++M +R++ SW A+I GY+  G F + L  F +M S   + P++ T+V VL AC  LGAL
Sbjct: 288 EEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGAL 347

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D GK +H  Y E+     N+++  A++DMYAKCG I+ A+SVF  +  + K +  +N++I
Sbjct: 348 DLGKWVH-VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM--DTKDLISWNTLI 404

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGI 480
            GLA H  G  ++ +F +M+  G KPDG+TF+ +LCAC+H GLVE+G  +F+SM  +Y I
Sbjct: 405 GGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLI 464

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            PQ+EHYGCMVD+LAR GRL++A   ++ MP +A+ VIW  LL ACR+++N ++ E+A Q
Sbjct: 465 MPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQ 524

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           +L++LEP + A+YV+LSN+  +  RWE+  +++  M D+G +K PG S IE N  +  F 
Sbjct: 525 RLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFY 584

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           +  + HPQ +EI  +L+ +   L+S GYVP+
Sbjct: 585 SLDERHPQIEEIYGVLRGLVKVLRSFGYVPD 615


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/611 (36%), Positives = 364/611 (59%), Gaps = 40/611 (6%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +  +LN C    + + G ++H H+IK      +++R  LI  Y+    + +A ++F+   
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            +++VS+  +I+ Y+Q      AL LF +M  S  +P+ FTF  + ++C        G+Q
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H++  K      S+M + +++++MYAK                                
Sbjct: 213 IHSIAIKR--NYESHMFVGSSLLDMYAK-------------------------------- 238

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+I  A  +F  + +RD+V+ TA+ISGY+Q+G   +AL+LF +++  G++ + VT  +V
Sbjct: 239 SGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASV 298

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L A  GL AL+ GK++H   + +  +   + L  ++IDMY+KCG++  A  +F  +P+  
Sbjct: 299 LTALSGLAALNHGKQVHSHVLRSGQYSY-VVLLNSLIDMYSKCGNVCYARRIFDSMPE-- 355

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           +T   +N+++ G ++HG+    + +F+ M E   +KPD +T++ VL  CSHG L + G +
Sbjct: 356 RTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLE 415

Query: 471 FFESMLN--YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            F +M+N   GI+P + HYGC+VDLL R GR++EA+  I+ MP+   + IW +LL +CR+
Sbjct: 416 IFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRV 475

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H + +IG I GQKLL+LEP++  +YV+LSN+ A   +WE+ R +R LM +  + K PG S
Sbjct: 476 HSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRS 535

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           ++E +  +H F AS  +HP+ +E+   +K++++K K  GYVP+   V++DVDEE+KE V+
Sbjct: 536 WVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVL 595

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
             HSEKLALAFGLI +    TIR+ KNLRIC DCH   K +S +Y R +++RD  RFH  
Sbjct: 596 LGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNI 655

Query: 709 KKGNCSCMDFW 719
             G CSC D+W
Sbjct: 656 VGGVCSCGDYW 666



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 215/455 (47%), Gaps = 50/455 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           + ++L    S +++++  ++H  ++ +  L      ++LI  +    C   L  +R +F 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC---LGDAREMFD 149

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   N+  W  ++  YS+     EAL L+  ML +    PN+FTF  +L SC     F+
Sbjct: 150 EMPQKNVVSWTAMISAYSQRGFAFEALNLFVEML-RSDTEPNHFTFATILTSCYGSLGFE 208

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G QIH   IK   E  +F+ ++L+  Y+  G I +AH VF     RD+V+   +I+GYA
Sbjct: 209 TGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 268

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q+     AL LFR++Q   +  ++ T+ ++ +A + L     GKQ H+ V ++     S 
Sbjct: 269 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS--GQYSY 326

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++L  ++I+MY+KCG +  A R+F +M   ++  +W++M+ GY++ G      +LF  M 
Sbjct: 327 VVLLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMR 385

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           + + V                               PD +T +AVL  C      D G  
Sbjct: 386 EENKVK------------------------------PDSITYLAVLSGCSHGQLEDMGLE 415

Query: 367 LHQQYIENVVFGR-----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           +      N+V G+     +I     V+D+  + G ++ A     K+P  + T +++ S++
Sbjct: 416 I----FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP-FVPTAAIWGSLL 470

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
                H   +  I +    +L+ L+P+      +L
Sbjct: 471 GSCRVH--SDVEIGIIVGQKLLELEPENAGNYVIL 503


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/608 (36%), Positives = 362/608 (59%), Gaps = 40/608 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +LN C    + + G ++H H+IK      +++R  LI  Y+    + +A  +F+    R+
Sbjct: 68  ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+  +I+ Y+Q      AL LF +M  S  +P+ FTF  + ++C        G+Q H+
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHS 187

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +  K      S+M + +++++MYAK                                 G+
Sbjct: 188 IAIKR--NYESHMFVGSSLLDMYAK--------------------------------SGR 213

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           I  A  +F  + +RD+V+ TA+ISGY+Q+G   +AL+LF +++  G++ + VT  +VL A
Sbjct: 214 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
             GL AL+ GK++H   + +  +   + L  ++IDMY+KCG++  A  +F  +P+  +T 
Sbjct: 274 LSGLAALNHGKQVHSHVLRSGQYSY-VVLLNSLIDMYSKCGNVCYARRIFDSMPE--RTC 330

Query: 415 SLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
             +N+++ G ++HG+    + +F+ M E   +KPD +T++ VL  CSHG L + G + F 
Sbjct: 331 ISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFY 390

Query: 474 SMLN--YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           +M+N   GI+P + HYGC+VDLL R GR++EA+  I+ MP+   + IW +LL +CR+H +
Sbjct: 391 NMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSD 450

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            +IG I GQKLL+LEP++  +YV+LSN+ A   +WE+ R +R LM +  + K PG S++E
Sbjct: 451 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 510

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            +  +H F AS  +HP+ +E+   +K++++K K  GYVP+   V++DVDEE+KE V+  H
Sbjct: 511 LDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGH 570

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLALAFGLI +    TIR+ KNLRIC DCH   K +S +Y R +++RD  RFH    G
Sbjct: 571 SEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGG 630

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 631 VCSCGDYW 638



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 215/455 (47%), Gaps = 50/455 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFS 66
           + S+L    S +++++  ++H  ++ +  L      ++LI  +    C   L  +R +F 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC---LGDARGMFD 121

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           ++   N+  W  ++  YS+     EAL L+  ML +    PN+FTF  +L SC     F+
Sbjct: 122 EMPQRNVVSWTAMISAYSQRGFAFEALNLFVEML-RSDTEPNHFTFATILTSCYGSLGFE 180

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G QIH   IK   E  +F+ ++L+  Y+  G I +AH VF     RD+V+   +I+GYA
Sbjct: 181 TGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 240

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q+     AL LFR++Q   +  ++ T+ ++ +A + L     GKQ H+ V ++     S 
Sbjct: 241 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS--GQYSY 298

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++L  ++I+MY+KCG +  A R+F +M   ++  +W++M+ GY++ G      +LF  M 
Sbjct: 299 VVLLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMR 357

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           + + V                               PD +T +AVL  C      D G  
Sbjct: 358 EENKVK------------------------------PDSITYLAVLSGCSHGQLEDMGLE 387

Query: 367 LHQQYIENVVFGR-----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           +      N+V G+     +I     V+D+  + G ++ A     K+P  + T +++ S++
Sbjct: 388 I----FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP-FVPTAAIWGSLL 442

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
                H   +  I +    +L+ L+P+      +L
Sbjct: 443 GSCRVH--SDVEIGIIVGQKLLELEPENAGNYVIL 475



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++L  CV   A+  G+R+H   I+      +++L T +I +Y KC  +  A  +F ++P+
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLP-SVYLRTRLIVLYNKCDCLGDARGMFDEMPQ 125

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             + V  + ++IS  +Q G    ++ +F EM     +P+  TF T+L +C      E G+
Sbjct: 126 --RNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR 183

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           Q     +    +  M     ++D+ A+ GR+ +A+G+   +P
Sbjct: 184 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 225


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/621 (39%), Positives = 358/621 (57%), Gaps = 58/621 (9%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +++ C+     K   QIH  +++ GL FD F  + LI   ++  F  ++ A +VF+    
Sbjct: 41  LIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLF-RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            +L ++NTLI  YA    P  +L +F R +  S   PD FTF  +  A +EL +   GK 
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
           FH +V K L  +GS++ +  ++I+ YAKCG + +  RVF                     
Sbjct: 158 FHGMVIKVL--LGSDVFILNSLIHFYAKCGELGLGYRVFVNX------------------ 197

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
                          +RD+VSW +MI+ + Q G   +ALELF +ME+  + P+ +TMV V
Sbjct: 198 --------------PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGV 243

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC      +FG+ +H  YIE      ++ L+ A++DMY KCGS++ A  +F K+P+  
Sbjct: 244 LSACAKKSDFEFGRWVHS-YIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK- 301

Query: 412 KTVSLFNSII-----------SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             VS    ++            GLA HG G+ +IA+F +M+   +KP+ VTF  +LCACS
Sbjct: 302 DIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACS 361

Query: 461 HGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLVEEG+ FF  M L YG+ P ++HY CMVD+L R G L+EA  LI+ MP    + +W
Sbjct: 362 HVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVW 421

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
            ALL AC +H N  + E A  +L++LEP +HGA YVLLSN+ A+  +W+    +RKLM D
Sbjct: 422 GALLGACTIHENVVLAEQACSQLIELEPGNHGA-YVLLSNIYAKAGKWDRVSGLRKLMRD 480

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G++K PG S IE +G +H FL    SHP  K+I   L ++  +L++ GYVPN   ++  
Sbjct: 481 VGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQL 540

Query: 639 VDEEE-KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           V+EE+ KE  +  HSEKLA+AFGLI++   + IRI KNLR+CGDCH   KL+S++Y REI
Sbjct: 541 VEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREI 600

Query: 698 MVRDAIRFHLFKKGNCSCMDF 718
           ++RD + + +   G  S  DF
Sbjct: 601 LLRDRV-WIVVDYGRISYEDF 620



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 218/400 (54%), Gaps = 28/400 (7%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+L++ C   KQ  QIH Q++ +GL     S+S+LI+  ALS   + L  ++ +F QI +
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPS-LDYAQQVFDQIPH 97

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN++ WNTL+R Y+ S +P ++L+++  ML +    P+ FTFPF++ + + L    +G  
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
            H  +IK  L  D+FI N+LIHFY+  G +   ++VF     RD+VS+N++I  + Q   
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGC 217

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL LF++M+   ++P+  T V + SAC + +D   G+  H+ + +N   +  ++ L 
Sbjct: 218 PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR--IXESLTLS 275

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            A+++MY KCG +  A+R+F  M   K   +W++M+ GY + G+ + A+           
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQ----------- 323

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
                   G +  G    A+ LF KM+   + P+ VT   +L AC  +G ++ G+    Q
Sbjct: 324 --------GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQ 375

Query: 371 YIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
               +V+G    +     ++D+  + G ++ A+ +  K+P
Sbjct: 376 M--ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMP 413



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 23/278 (8%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LI F+A  G     +R   +F      ++  WN+++  + +   P+EAL L+  M ++
Sbjct: 175 NSLIHFYAKCGELGLGYR---VFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             V PN  T   VL++CA+ S F+ G  +H +I +  +   L + NA++  Y+  G + +
Sbjct: 232 N-VKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVED 290

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKE------------PCPALWLFRKMQDSCIQPDA 210
           A ++F+    +D+VS+ T++ GYA++ E               A+ LF KMQ+  ++P+A
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNA 350

Query: 211 FTFVAMFSACTELNDPRIGKQFH---AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
            TF  +  AC+ +     G+ F     +VY  L  V         ++++  + GL+  A 
Sbjct: 351 VTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKH----YACMVDILGRAGLLEEAV 406

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            +   M M+ + + W +++   T    +  A Q   Q+
Sbjct: 407 ELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQL 444


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/557 (39%), Positives = 350/557 (62%), Gaps = 11/557 (1%)

Query: 40   ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
            IS   L+  +ALS     + ++  LF QI  P +  WN ++RG+S+++ P EA+  Y  M
Sbjct: 730  ISIFNLLKSYALS--PTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLM 787

Query: 100  LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
             S+ +   NN T+PF+L +CAR+S+  S   +H  ++K G + DLF+ NALIH Y+ F  
Sbjct: 788  YSQALFG-NNLTYPFLLKACARISNV-SCTTVHARVLKLGFDSDLFVSNALIHGYAGFCE 845

Query: 160  INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
            +  A KVF+    RDLVS+N+LI GY + +     L +F +M+ + ++ DA T V +  A
Sbjct: 846  LGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLA 905

Query: 220  CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
            CT L +  +       + +N   V  ++ L   +I+MY +  ++++A RVF  M   ++ 
Sbjct: 906  CTVLGEWGVVDAMIEYIEENK--VEVDVYLGNTLIDMYGRRSMVDLARRVFDRM-RDRNM 962

Query: 280  AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
             +W++MI GY + G +  AR+LFD M  RD++SWT+MIS YSQ G F +A+ LF +M   
Sbjct: 963  VSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVT 1022

Query: 340  GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
             + PDE+T+ +VL AC  +GALD G+ +H+ YI       +I++  A+IDMY KCG+++ 
Sbjct: 1023 KVKPDEITVASVLSACAHIGALDVGEAVHE-YIRKYDVNADIYVGNALIDMYCKCGAVEK 1081

Query: 400  ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
             LSVF ++ K   +VS + S+I+GLA +G  ++++ +F  M   G++P   TFV VL AC
Sbjct: 1082 GLSVFEEMGKR-DSVS-WTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLAC 1139

Query: 460  SHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
            +H G+V++G ++FESM   YG+ P+M+HYGC+VDLL+R G L  AY  I+ MP D + V+
Sbjct: 1140 AHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVV 1199

Query: 519  WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
            WR LL+A ++H N  + EIA +KLL+ +P +  +Y+L SN  A + RWE+  ++R+LM++
Sbjct: 1200 WRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEE 1259

Query: 579  SGIQKPPGWSYIEHNGT 595
            S + KP   S +E N +
Sbjct: 1260 SNVHKPSASSSVEINDS 1276


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 347/616 (56%), Gaps = 39/616 (6%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           ++P    +  +L SC    + K G Q+H  +   G  FD  I   L++ Y +   +++A 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            +F+     ++  +N LI GYA       A+ L+ +M D  + PD FTF  +  AC  L+
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
               G++ H  V +       ++ +  A+I+MYAKCG                       
Sbjct: 191 AIEHGREIHEHVVQT--GWEKDVFVGAALIDMYAKCGC---------------------- 226

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                     +  AR++FD++  RD V W +M++ YSQ G     L L  +M   G+ P 
Sbjct: 227 ----------VGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPT 276

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           E T+V  + A     AL  G+ LH        F  +  + TA++DMYAKCGS+  A ++F
Sbjct: 277 EATLVTAISASADNAALPQGRELHGLSWRQE-FESHDKVKTALVDMYAKCGSVRVARNLF 335

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++   +K V  +N++I+G A HG    ++ +F EM  +  KPD +TFV VL ACSHGGL
Sbjct: 336 ERL--GVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGL 392

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           +EEG  FFE+M+ +Y I P ++HY CMVDLL   GRLDEAY LI  M    +S +W ALL
Sbjct: 393 LEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALL 452

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            +C++H N ++GEIA ++L++LEPD   +YV+LSN+ A+  +WE   ++RKLM D  ++K
Sbjct: 453 NSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKK 512

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
               S+IE    +H FL+   SHP + EI   L+ +   +K AGY P+T  V  DV+++E
Sbjct: 513 SIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDE 572

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           K  +V  HSE+LA+AFGLI++     + ITKNLRIC DCH+A K +S+I  REI VRD  
Sbjct: 573 KANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVN 632

Query: 704 RFHLFKKGNCSCMDFW 719
           R+H FK G CSC D+W
Sbjct: 633 RYHHFKDGVCSCGDYW 648



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 227/445 (51%), Gaps = 47/445 (10%)

Query: 4   LVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLF 59
           L   +S+  +LL+SC   K++K   Q+H Q+  +G     + +++L++ + +    + L 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVC---DSLS 127

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R+LF +I   NIF+WN L+RGY+ +   + A+ LY  M   G+V P+NFTFPFVL +C
Sbjct: 128 SARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV-PDNFTFPFVLKAC 186

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A LS+ + G +IH H+++ G E D+F+  ALI  Y+  G + +A +VF+  L RD V +N
Sbjct: 187 AALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWN 246

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +++  Y+Q   P   L L  +M  + ++P   T V   SA  +      G++ H + ++ 
Sbjct: 247 SMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQ 306

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
                S+  +KTA+++MYAKCG + +A  +F  +G+ K   +W++MI+GY   G    A 
Sbjct: 307 E--FESHDKVKTALVDMYAKCGSVRVARNLFERLGV-KRVVSWNAMITGYAMHGHATEAL 363

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            LF++M++                                   PD +T V VL AC   G
Sbjct: 364 DLFEEMNRV--------------------------------AKPDHITFVGVLSACSHGG 391

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L+ G    +  I +      +   T ++D+    G +D A ++  ++ K L    ++ +
Sbjct: 392 LLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQM-KVLPDSGVWGA 450

Query: 420 IISGLAQHG---LGETSIAVFREME 441
           +++    H    LGE ++    E+E
Sbjct: 451 LLNSCKIHANVELGEIALERLIELE 475



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 158/331 (47%), Gaps = 38/331 (11%)

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           + +C+ P    + ++  +C      + GKQ HA V   L   G + ++ T ++N+Y  C 
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVC--LAGFGFDTVIATKLVNLYCVCD 124

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
            ++ A                                R LFD++ + ++  W  +I GY+
Sbjct: 125 SLSSA--------------------------------RLLFDRIPKHNIFLWNVLIRGYA 152

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
             G +  A++L+ +M   G+ PD  T   VL+AC  L A++ G+ +H+  ++   + +++
Sbjct: 153 WNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQ-TGWEKDV 211

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           F+  A+IDMYAKCG + +A  VF KI   ++   L+NS+++  +Q+G  +  +++  EM 
Sbjct: 212 FVGAALIDMYAKCGCVGSAREVFDKIL--VRDAVLWNSMLAAYSQNGHPDACLSLCSEMV 269

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
           L GL+P   T VT + A +    + +G++          +   +    +VD+ A+ G + 
Sbjct: 270 LTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVR 329

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            A  L + +      V W A++    +H +A
Sbjct: 330 VARNLFERLGVK-RVVSWNAMITGYAMHGHA 359


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/607 (38%), Positives = 340/607 (56%), Gaps = 47/607 (7%)

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF----YSIFGYINNAHKVFEGSLARDLVS 177
           ++S     Q+H  I+K   +     RN    F     S  G +  AH +      ++   
Sbjct: 3   ITSLSQAMQLHAQILK-SPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFF 61

Query: 178 YNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +NT+I  Y+Q  +P  AL LF  M  Q +  +PD FT+  +  +C  L  PR+GKQ H +
Sbjct: 62  HNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGL 121

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           +YK+   + S+  +   +I+MY+ CG                                K 
Sbjct: 122 IYKS--GLESDRYVSNGLIHMYSSCG--------------------------------KS 147

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
            RA ++F +M  RD+VSWT+MI G+       +A+ LF +M   G+ P+E T+V+VLRAC
Sbjct: 148 GRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRAC 207

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              GA+  G+R+ Q  IE    G    + TA+IDMYAKCGSI +A  VF  I    K V 
Sbjct: 208 ADAGAVGMGRRV-QGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVN--KDVF 264

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++ISGLA HGL E ++ +F +ME  GL+PD  T   VL AC + G   EG  +F SM
Sbjct: 265 AWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSM 324

Query: 476 L-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              YGIKP ++HYGCMVDLLAR G LDEA   I+ MP + + V+WR L+ A ++H +   
Sbjct: 325 WCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDR 384

Query: 535 GE--IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
            E  +  + LL ++ D    YVLL N+ A   +W +  ++R+LM+  G+ KPPG S IE 
Sbjct: 385 SEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEV 444

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           +G +H F A    H + ++I   L ++  +LK+ GY P   +V+ ++D +EK   + +HS
Sbjct: 445 DGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHS 504

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EKLA+AFGLI +     IRI KNLR C DCH   KL+S+IY+++I+VRD IRFH F  G+
Sbjct: 505 EKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGD 564

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 565 CSCKDYW 571



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 211/432 (48%), Gaps = 39/432 (9%)

Query: 20  SLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           SL QA+Q+H QI+ S      +   + L +F ALS   + L  + ++ + +   N F  N
Sbjct: 5   SLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGD-LTYAHLILNSLSTQNSFFHN 63

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVS-PNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           T++R YS++  P +AL L+ SML +     P+ FT+PF+L SCARL   + G Q+H  I 
Sbjct: 64  TMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIY 123

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K GLE D ++ N LIH YS  G    A+KVF     RD+VS+ ++I+G+        A+ 
Sbjct: 124 KSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIR 183

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           LF +M +  ++P+  T V++  AC +     +G++   V+ +    +G    ++TA+I+M
Sbjct: 184 LFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERK--IGLEANVRTALIDM 241

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           YAKCG +  A +VF  + ++K   AW++MISG    G  E A  LFDQM           
Sbjct: 242 YAKCGSIGSARKVFDGI-VNKDVFAWTAMISGLANHGLCEEAVTLFDQM----------- 289

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
                               ES G+ PDE TM AVL AC   G    G            
Sbjct: 290 --------------------ESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYG 329

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
               I     ++D+ A+ G +D A     K+P     V L+ ++I     HG  + S  +
Sbjct: 330 IKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVV-LWRTLIWASKVHGDIDRSEQL 388

Query: 437 FREMELMGLKPD 448
            ++  L+ +  D
Sbjct: 389 MKDRGLLKMDSD 400



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 160/337 (47%), Gaps = 14/337 (4%)

Query: 14  LLESCKSLKQ---ALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+SC  LKQ     Q+HG I  SGL +    S+ LI  ++  G K+G  R+  +F ++ 
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCG-KSG--RAYKVFGKMR 158

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + ++  W +++ G+   D   EA+ L+  M+  G V PN  T   VL +CA   +   G 
Sbjct: 159 DRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDG-VEPNEATVVSVLRACADAGAVGMGR 217

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           ++   I +  +  +  +R ALI  Y+  G I +A KVF+G + +D+ ++  +I+G A   
Sbjct: 218 RVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHG 277

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ LF +M+   ++PD  T  A+ SAC        G  +   ++   G +   +  
Sbjct: 278 LCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYG-IKPTIQH 336

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD-----Q 304
              ++++ A+ G ++ AE     M +      W ++I      G I+R+ QL       +
Sbjct: 337 YGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLK 396

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           MD  D  S+  + + Y+  G +    ++   M   G+
Sbjct: 397 MDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGL 433


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 261/798 (32%), Positives = 415/798 (52%), Gaps = 91/798 (11%)

Query: 2   KRLVLEHSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG 57
           K +  +  +L  +L+ C +L +    +++H  ++  G    +  S  LI+ +    C  G
Sbjct: 125 KGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLY--EKCL-G 181

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           + R+  +F +      F+WNT++    RS+  ++AL L   M S    + +  T   +L 
Sbjct: 182 IDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDG-TIVKLLQ 240

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +C +L +   G QIH ++I+FG   +  I N+++  YS    +  A  VF+ +   +L S
Sbjct: 241 ACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLAS 300

Query: 178 YNTLINGYAQVKEPCPALW-LFRKMQDSCIQPDAFTFVAMFS------------------ 218
           +N++I+ YA V       W LFR+M+ S I+PD  T+ ++ S                  
Sbjct: 301 WNSIISSYA-VNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSL 359

Query: 219 -----------------ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
                            A  EL    +GK+ H  + ++   +  ++ + T++++MY K  
Sbjct: 360 QSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSK--LEYDVYVCTSLVDMYIKND 417

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR------------- 308
            +  AE VF     +K+  AW+S+ISGYT +G  + A +L  QM +              
Sbjct: 418 CLEKAEVVFHHTK-NKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLV 476

Query: 309 --------------------------DLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                                     ++VSWTAMISG  Q   ++ AL+ F +M+   + 
Sbjct: 477 SGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVK 536

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+  T+  +LRAC G   L  G+ +H   +++  F  +I++ TA+IDMY+K G +  A  
Sbjct: 537 PNSTTISTLLRACAGPSLLKKGEEIHCFSMKHG-FVDDIYIATALIDMYSKGGKLKVAHE 595

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  I +  KT+  +N ++ G A +G GE    +F  M   G++PD +TF  +L  C + 
Sbjct: 596 VFRNIKE--KTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNS 653

Query: 463 GLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLV +G ++F+SM  +Y I P +EHY CMVDLL + G LDEA   I +MP  A++ IW A
Sbjct: 654 GLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGA 713

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           +LAACRLH++ KI EIA + L  LEP + A+YVL+ N+ +   RW +  ++++ M   G+
Sbjct: 714 VLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGV 773

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           + P  WS+I+   T+H F    KSHP+  EI   L  +  ++K  GYVP+T  V  ++D+
Sbjct: 774 KIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDD 833

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
            EKE V+  H+EKLA+ +GL+  +    IR+ KN RIC DCH A K +S    REI +RD
Sbjct: 834 SEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRD 893

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH F  G CSC D W
Sbjct: 894 GGRFHHFMNGECSCNDRW 911



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 229/473 (48%), Gaps = 15/473 (3%)

Query: 72  NIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           N  +WN+ +  + S      E L ++  +  KG V  ++     VL  C  L     G +
Sbjct: 94  NYLLWNSFLEEFASFGGDSHEILEVFKELHDKG-VKFDSKALTVVLKICLALMELWLGME 152

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H  ++K G + D+ +  ALI+ Y     I+ A++VF+ +  ++   +NT++    + + 
Sbjct: 153 VHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSER 212

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL L R+MQ +  +    T V +  AC +L     GKQ H  V +  G V SN  + 
Sbjct: 213 WEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIR-FGRV-SNTSIC 270

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD---- 306
            ++++MY++   + +A  VF +     + A+W+S+IS Y   G +  A  LF +M+    
Sbjct: 271 NSIVSMYSRNNRLELARAVFDSTE-DHNLASWNSIISSYAVNGCLNGAWDLFREMESSSI 329

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           + D+++W +++SG+   G +   L     ++S G  PD  ++ + L+A + LG  + GK 
Sbjct: 330 KPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKE 389

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H  YI       ++++ T+++DMY K   ++ A  VF+   KN K +  +NS+ISG   
Sbjct: 390 IH-GYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHT-KN-KNICAWNSLISGYTY 446

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
            GL + +  +  +M+  G+K D VT+ +++   S  G  EE       + + G+ P +  
Sbjct: 447 KGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVS 506

Query: 487 YGCMVDLLARDGRLDEA---YGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +  M+    ++    +A   +  +Q      NS     LL AC      K GE
Sbjct: 507 WTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGE 559



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 5/243 (2%)

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIH 342
           SM+  Y   G  E A ++F     R+ + W + +  ++  GG S + LE+F ++   G+ 
Sbjct: 69  SMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVK 128

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D   +  VL+ C+ L  L  G  +H   ++   F  ++ L+ A+I++Y KC  ID A  
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLLKR-GFQVDVHLSCALINLYEKCLGIDRANQ 187

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF + P  L+   L+N+I+    +    E ++ + R M+    K    T V +L AC   
Sbjct: 188 VFDETP--LQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKL 245

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
             + EGKQ    ++ +G          +V + +R+ RL+ A  +  S   D N   W ++
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTE-DHNLASWNSI 304

Query: 523 LAA 525
           +++
Sbjct: 305 ISS 307


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/663 (33%), Positives = 374/663 (56%), Gaps = 37/663 (5%)

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  +R +F  +   ++  WN+++  YS S+   EA  ++  M  +G    +  TF  +L+
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEG-ERCDRVTFLSILD 119

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +C    + + G  +   I +   E DLF+  ALI  Y+      NA +VF     ++L++
Sbjct: 120 ACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLIT 179

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           ++ +I  +A       AL  FR MQ   I P+  TF+++ +  T  +      + H ++ 
Sbjct: 180 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLIT 239

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           ++   +     +  A++N+Y +C                                G+++ 
Sbjct: 240 EH--GLDDTTTMSNALVNVYGRC------------------------------ETGELDV 267

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A  +  +MD++ + +W  +I+GY+  G   +ALE + +++   I  D+VT ++VL AC  
Sbjct: 268 AEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTS 327

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
             +L  GK +H   +E      ++ +  A+ +MY+KCGS++ A  +F  +P  +++   +
Sbjct: 328 STSLAEGKMIHSNAVE-CGLDSDVIVKNALTNMYSKCGSMENARRIFDSMP--IRSAVSW 384

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-L 476
           N ++   AQHG  E  + + R+ME  G+K +G+TFV+VL +CSH GL+ EG Q+F S+  
Sbjct: 385 NGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGH 444

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           + GI+ + EHYGC+VDLL R G+L EA   I  MP +   V W +LL ACR+H++   G+
Sbjct: 445 DRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGK 504

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           +A +KLL+L+P + +  V+LSN+ +E   W+ A ++R+ M    ++K PG S I+    +
Sbjct: 505 LAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKV 564

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H F     SHP+  EI   ++++   ++ AGYVP+T  V+ DVDEE+KE++++YHSEKLA
Sbjct: 565 HEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLA 624

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           +AFGLI++  K ++ I KNLR+C DCH A K +S+I  REI+VRD  RFH F+ G+CSC 
Sbjct: 625 IAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCK 684

Query: 717 DFW 719
           D+W
Sbjct: 685 DYW 687



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 200/433 (46%), Gaps = 41/433 (9%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           ML +G V  N  TF  VLNS     + + G  IH  + +     D+F+  AL++ Y+  G
Sbjct: 1   MLLEG-VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCG 59

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            + +A KVF+G   R + ++N++I+ Y+  +    A ++F++MQ    + D  TF+++  
Sbjct: 60  SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILD 119

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC    + + GK     + +       ++ + TA+I MYA+C     A +VF  M   K+
Sbjct: 120 ACVNPENLQHGKHVRESISET--SFELDLFVGTALITMYARCRSPENAAQVFGRM-KQKN 176

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
              WS++I+ +   G    A + F  M Q                               
Sbjct: 177 LITWSAIITAFADHGHCGEALRYFRMMQQE------------------------------ 206

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC--GS 396
            GI P+ VT +++L        L+   R+H    E+        ++ A++++Y +C  G 
Sbjct: 207 -GILPNRVTFISLLNGFTTPSGLEELSRIHLLITEH-GLDDTTTMSNALVNVYGRCETGE 264

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +D A  +  ++ +  + ++ +N +I+G   HG    ++  ++ ++L  +  D VTF++VL
Sbjct: 265 LDVAEVILQEMDE--QQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVL 322

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
            AC+    + EGK    + +  G+   +     + ++ ++ G ++ A  +  SMP  + +
Sbjct: 323 NACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS-A 381

Query: 517 VIWRALLAACRLH 529
           V W  +L A   H
Sbjct: 382 VSWNGMLQAYAQH 394



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 164/344 (47%), Gaps = 29/344 (8%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG-LFRSRILFSQ 67
           SLL    +   L++  +IH  I   GL+   + S+ L++ +    C+ G L  + ++  +
Sbjct: 217 SLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGR--CETGELDVAEVILQE 274

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +D   I  WN L+ GY+     +EAL  Y  +  + I   +  TF  VLN+C   +S   
Sbjct: 275 MDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAI-PVDKVTFISVLNACTSSTSLAE 333

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH + ++ GL+ D+ ++NAL + YS  G + NA ++F+    R  VS+N ++  YAQ
Sbjct: 334 GKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQ 393

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHA--------VVYK 238
             E    L L RKM+   ++ +  TFV++ S+C+       G Q FH+        V  +
Sbjct: 394 HGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTE 453

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER- 297
           + GC          ++++  + G +  AE+  S M        W+S++        ++R 
Sbjct: 454 HYGC----------LVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRG 503

Query: 298 ---ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
              AR+L  ++D  +  +   + + YS+ G +  A +L   M S
Sbjct: 504 KLAARKLL-ELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMAS 546


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/727 (34%), Positives = 387/727 (53%), Gaps = 58/727 (7%)

Query: 7   EHSSLLALLESCKS---LKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSR 62
           E   L  LL +C       Q LQ+H   V+ G     I ++ LI  +           SR
Sbjct: 3   ERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKC--------SR 54

Query: 63  I-----LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           +     +F ++   N+  W  LM GY +  + + +L L   M   G V PN FTF   L 
Sbjct: 55  VDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSG-VKPNEFTFSTSLK 113

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +C  L   ++G QIH   +K G E+   + NA I  YS  G I  A +VF     R+LVS
Sbjct: 114 ACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVS 173

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N +I G+        +L LF++MQ     PD FTF +   AC  L   R G Q HA + 
Sbjct: 174 WNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLI 233

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
                +    ++ +A++++YAKCG +  A++VF  +   K+  +WS++I G+ +EG +  
Sbjct: 234 TRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRI-EQKNLISWSALIQGFAQEGNLLE 292

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A  LF Q+ +             S V GF  ++        +G+  D             
Sbjct: 293 AMDLFRQLRE-----------SVSNVDGFVLSI-------MMGVFAD------------- 321

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L  ++ GK++H  YI  V  G +I +  ++IDMY KCG  + A  +F ++   ++ V  +
Sbjct: 322 LALVEQGKQMH-CYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEM--QVRNVVSW 378

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
             +I+G  +HGLGE +I +F  M+L G++ D V ++ +L ACSH GL+ E +++F  +  
Sbjct: 379 TVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN 438

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           N+ +KP +EHY CMVD+L R G+L EA  LI++M    N  IW+ LL+ACR+H N +IG 
Sbjct: 439 NHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGR 498

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
             G+ L  ++ D+  +YV++SN+ AE   W+E  +VRKL+   G++K  G S++E N  +
Sbjct: 499 EVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEI 558

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           H F     +HP T++I  MLK+M  ++K   GY       + DV+EE KE  +  HSEKL
Sbjct: 559 HFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKL 618

Query: 656 ALAFGLI---NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           A+   L+     +    IR+ KNLR+CGDCH   K LS+I ++  +VRDA RFH F+ G 
Sbjct: 619 AIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGL 678

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 679 CSCGDYW 685


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 358/640 (55%), Gaps = 42/640 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF--YSIFGYINNAHKVFEGSLA 172
           +LNSC  L +     QIH   IK+G++ D +    LI     SI   +  A ++      
Sbjct: 3   LLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 59

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            D   +NTL+ GY++  EP  ++ +F +M +   + PD+F+F  +  A       R G Q
Sbjct: 60  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 119

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG----------------- 274
            H    K+   + S++ + T +I MY  CG +  A +VF  M                  
Sbjct: 120 MHCQALKH--GLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 177

Query: 275 -------------MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                        + ++  +W+ M++GY + G++E A+++F +M  RD VSW+ MI G +
Sbjct: 178 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 237

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
             G F+++   F +++  G+ P+EV++  VL AC   G+ +FGK LH  ++E   +   +
Sbjct: 238 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHG-FVEKAGYSWIV 296

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            +  A+IDMY++CG++  A  VF  + +    VS + S+I+GLA HG GE ++ +F EM 
Sbjct: 297 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVS-WTSMIAGLAMHGQGEEAVRLFNEMT 355

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
             G+ PDG++F+++L ACSH GL+EEG+ +F  M   Y I+P++EHYGCMVDL  R G+L
Sbjct: 356 AYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKL 415

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
            +AY  I  MP    +++WR LL AC  H N ++ E   Q+L +L+P++    VLLSN  
Sbjct: 416 QKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAY 475

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           A   +W++   +RK M    I+K   WS +E   T+++F A +K      E    LK++ 
Sbjct: 476 ATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEII 535

Query: 621 MKLKS-AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
           ++LK  AGY P     ++DV+EEEKE  VS HSEKLALAF L        IRI KNLRIC
Sbjct: 536 LRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRIC 595

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   KL S++Y  EI+VRD  RFH FK G+CSC D+W
Sbjct: 596 RDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 206/482 (42%), Gaps = 102/482 (21%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL SCK+L+   QIHG  +  G++     + +LI   A+S   + L  +R L      
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAIS-ISDALPYARRLLLCFPE 59

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P+ F++NTL+RGYS SD P  ++ ++  M+ KG V P++F+F FV+ +     S ++G Q
Sbjct: 60  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 119

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV------------------------ 166
           +HC  +K GLE  LF+   LI  Y   G +  A KV                        
Sbjct: 120 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 179

Query: 167 -------FEGSLARDLVSYNTLINGYAQVKEPCPALWLF--------------------- 198
                  F+  L R+  S+N ++ GY +  E   A  +F                     
Sbjct: 180 VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHN 239

Query: 199 ----------RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                     R++Q + + P+  +   + SAC++      GK  H  V K     G + +
Sbjct: 240 GSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEK----AGYSWI 295

Query: 249 --LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +  A+I+MY++CG + MA  VF  M   +   +W+SMI+G    G+ E A +LF++M 
Sbjct: 296 VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMT 355

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                          + G+ PD ++ +++L AC   G ++ G+ 
Sbjct: 356 -------------------------------AYGVTPDGISFISLLHACSHAGLIEEGED 384

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
              +          I     ++D+Y + G +  A     ++P    T  ++ +++   + 
Sbjct: 385 YFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIP-PTAIVWRTLLGACSS 443

Query: 427 HG 428
           HG
Sbjct: 444 HG 445



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 126/250 (50%), Gaps = 3/250 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           ++ +FS++ + +   W+T++ G + + S  E+  LY   L +  +SPN  +   VL++C+
Sbjct: 214 AKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF-LYFRELQRAGMSPNEVSLTGVLSACS 272

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYN 179
           +  SF+ G  +H  + K G  + + + NALI  YS  G +  A  VFEG    R +VS+ 
Sbjct: 273 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 332

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++I G A   +   A+ LF +M    + PD  +F+++  AC+       G+ + + + K 
Sbjct: 333 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEM-KR 391

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           +  +   +     ++++Y + G +  A      M +  +   W +++   +  G IE A 
Sbjct: 392 VYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAE 451

Query: 300 QLFDQMDQRD 309
           Q+  ++++ D
Sbjct: 452 QVKQRLNELD 461


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 352/617 (57%), Gaps = 51/617 (8%)

Query: 150 LIHFYSIFGYINNAHKVFEG--------SLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
           LI  YS  G +++A  +F+         + A +    NT++  YA       A+ L+  M
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM 123

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           Q   +  + FT+  +   C        G+  H  V +     GS++ ++ A+++MYAKCG
Sbjct: 124 QRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRT--GFGSDLFVEAALVDMYAKCG 181

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTR----------------EG------------ 293
            +  A  VF  M + +    W++MI+ Y +                EG            
Sbjct: 182 EIGDAHEVFDRM-LIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240

Query: 294 -----------KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       I RAR +FD+M++R+ +SW +M+SGY+Q G  + AL LF +M++    
Sbjct: 241 SAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD 300

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P+ VT + ++ AC  LG+   G++LH  ++ +     +  L  A++DMY KCG +DTA+ 
Sbjct: 301 PNPVTALIMVSACSYLGSKHLGRKLHN-FVISSKMDIDTTLRNAIMDMYMKCGDLDTAVE 359

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           +F       + VS +N +ISG   HG G+ ++ +F  M++ G++P+ +TF ++L ACSH 
Sbjct: 360 MFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHA 419

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           GL++EG++ F  M    ++P+M+HY CMVD+L R G L+EA+ LI+ +P   +  +W AL
Sbjct: 420 GLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGAL 479

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L ACR+H N ++GEIA   L  LEP+H  +YVL+SN+ A + +W+E   VR+ M   G++
Sbjct: 480 LLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLK 539

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           KP  +S IE    +H F  + +S P  +E+   ++ + +++K  GYVP+   V+ DV+ E
Sbjct: 540 KPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE 599

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           +KE +++YHSEKLA+AFG++       I++TKNLR+C DCH AFK +S IY R+I+VRD 
Sbjct: 600 DKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDG 659

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH F+ G CSC D+W
Sbjct: 660 NRFHHFQGGRCSCGDYW 676



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 222/493 (45%), Gaps = 60/493 (12%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFSQ---- 67
           LL+ C SL     IH  +   G   H     ++LI  ++  G    L  +R LF      
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLG---DLHSARTLFDHRHHH 87

Query: 68  ----IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
                  PN F+ NT++R Y+ +    EA+ LY  M   G V  NNFT+PFVL  CA   
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG-VGVNNFTYPFVLKVCASEL 146

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G  +H  +++ G   DLF+  AL+  Y+  G I +AH+VF+  L RD+V +  +I 
Sbjct: 147 GAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMIT 206

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            Y Q + P  AL LFRKMQ+     D  T +++ SA  +L D R+      +V+  +   
Sbjct: 207 LYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRME-- 264

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-------------------------- 277
             N +   ++++ Y + G    A  +F+ M  S+                          
Sbjct: 265 ERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRK 324

Query: 278 ------------STAAWSSMISGYTREGKIERARQLFD--QMDQRDLVSWTAMISGYSQV 323
                        T   ++++  Y + G ++ A ++F+  ++ +RD+ SW  +ISGY   
Sbjct: 325 LHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVH 384

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +ALELF +M+  G+ P+++T  ++L AC   G +D G++     +  +     +  
Sbjct: 385 GHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD-MTKLSVRPEMKH 443

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
              ++DM  + G ++ A  +  KIP    +  ++ +++     H  G T +       L 
Sbjct: 444 YACMVDMLGRAGFLNEAFRLIKKIPSR-PSDEVWGALLLACRIH--GNTELGEIAANNLF 500

Query: 444 GLKPDGVTFVTVL 456
            L+P+   +  ++
Sbjct: 501 QLEPEHTGYYVLM 513


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/644 (35%), Positives = 370/644 (57%), Gaps = 49/644 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFF---ALSGCKNG 57
           M +L     S+L     C +     Q    ++ SGL HH       +FF    L      
Sbjct: 1   MPKLATLRHSILCCFHKCGTFDHLKQTTSILITSGLAHH-------TFFLSDILRSATKD 53

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  + +LF ++  P IF+WNT++RG+S S  PQ  LV Y+ + + G++ P+  TFP +L 
Sbjct: 54  LGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVI-PDRHTFPLLLK 112

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           + ++L + ++  Q + HI+KFGL+FD F++N+L+  ++  GY++ + ++F  +  +D+VS
Sbjct: 113 AFSKLRN-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVS 171

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +  LING  +      AL  F +M+ S ++ D  T V++  A   L D   G+  H   Y
Sbjct: 172 WTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGF-Y 230

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
              G V  ++ + +A+++MY+KCG                                  + 
Sbjct: 231 VESGRVIWDVYVGSALVDMYSKCGY--------------------------------CDD 258

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A ++F++M  R+LVSW A+I+GY Q   + +AL++F +M   GI P++ T+ + L AC  
Sbjct: 259 AVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQ 318

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           LG+LD G+ LH+ Y++    G N  L TA++DMY+KCG +D AL VF K+P   K V  +
Sbjct: 319 LGSLDQGRWLHE-YVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPA--KDVYPW 375

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
            ++I+GLA  G   +S+ +F +M    ++P+GVTF+ VL AC+HGGLV+EG + F  M+ 
Sbjct: 376 TAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC 435

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +Y ++P ++HYGCMVDLL R GRL+EA   I+SMP +    +W AL + C +H+  ++GE
Sbjct: 436 DYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGE 495

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
             G  L+ L+P H   Y+LL+N+ +   +WE A  VR+LM   G+ K PG S+IE NG +
Sbjct: 496 HIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVI 555

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           H F+A  KSH ++  + +ML+ ++ +LK A Y  ++  + F +D
Sbjct: 556 HEFIAFDKSHTESINVYMMLESVSAQLKLATYALDSNLLTFTID 599


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 358/640 (55%), Gaps = 42/640 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF--YSIFGYINNAHKVFEGSLA 172
           +LNSC  L +     QIH   IK+G++ D +    LI     SI   +  A ++      
Sbjct: 11  LLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 67

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            D   +NTL+ GY++  EP  ++ +F +M +   + PD+F+F  +  A       R G Q
Sbjct: 68  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 127

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG----------------- 274
            H    K+   + S++ + T +I MY  CG +  A +VF  M                  
Sbjct: 128 MHCQALKH--GLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185

Query: 275 -------------MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                        + ++  +W+ M++GY + G++E A+++F +M  RD VSW+ MI G +
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
             G F+++   F +++  G+ P+EV++  VL AC   G+ +FGK LH  ++E   +   +
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHG-FVEKAGYSWIV 304

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            +  A+IDMY++CG++  A  VF  + +    VS + S+I+GLA HG GE ++ +F EM 
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVS-WTSMIAGLAMHGQGEEAVRLFNEMT 363

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
             G+ PDG++F+++L ACSH GL+EEG+ +F  M   Y I+P++EHYGCMVDL  R G+L
Sbjct: 364 AYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKL 423

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
            +AY  I  MP    +++WR LL AC  H N ++ E   Q+L +L+P++    VLLSN  
Sbjct: 424 QKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAY 483

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           A   +W++   +RK M    I+K   WS +E   T+++F A +K      E    LK++ 
Sbjct: 484 ATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEII 543

Query: 621 MKLKS-AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
           ++LK  AGY P     ++DV+EEEKE  VS HSEKLALAF L        IRI KNLRIC
Sbjct: 544 LRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRIC 603

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   KL S++Y  EI+VRD  RFH FK G+CSC D+W
Sbjct: 604 RDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 206/482 (42%), Gaps = 102/482 (21%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL SCK+L+   QIHG  +  G++     + +LI   A+S   + L  +R L      
Sbjct: 9   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAIS-ISDALPYARRLLLCFPE 67

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P+ F++NTL+RGYS SD P  ++ ++  M+ KG V P++F+F FV+ +     S ++G Q
Sbjct: 68  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 127

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV------------------------ 166
           +HC  +K GLE  LF+   LI  Y   G +  A KV                        
Sbjct: 128 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 187

Query: 167 -------FEGSLARDLVSYNTLINGYAQVKEPCPALWLF--------------------- 198
                  F+  L R+  S+N ++ GY +  E   A  +F                     
Sbjct: 188 VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHN 247

Query: 199 ----------RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                     R++Q + + P+  +   + SAC++      GK  H  V K     G + +
Sbjct: 248 GSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEK----AGYSWI 303

Query: 249 --LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +  A+I+MY++CG + MA  VF  M   +   +W+SMI+G    G+ E A +LF++M 
Sbjct: 304 VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMT 363

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                          + G+ PD ++ +++L AC   G ++ G+ 
Sbjct: 364 -------------------------------AYGVTPDGISFISLLHACSHAGLIEEGED 392

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
              +          I     ++D+Y + G +  A     ++P    T  ++ +++   + 
Sbjct: 393 YFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIP-PTAIVWRTLLGACSS 451

Query: 427 HG 428
           HG
Sbjct: 452 HG 453



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 126/250 (50%), Gaps = 3/250 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           ++ +FS++ + +   W+T++ G + + S  E+  LY   L +  +SPN  +   VL++C+
Sbjct: 222 AKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF-LYFRELQRAGMSPNEVSLTGVLSACS 280

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYN 179
           +  SF+ G  +H  + K G  + + + NALI  YS  G +  A  VFEG    R +VS+ 
Sbjct: 281 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 340

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           ++I G A   +   A+ LF +M    + PD  +F+++  AC+       G+ + + + K 
Sbjct: 341 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEM-KR 399

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           +  +   +     ++++Y + G +  A      M +  +   W +++   +  G IE A 
Sbjct: 400 VYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAE 459

Query: 300 QLFDQMDQRD 309
           Q+  ++++ D
Sbjct: 460 QVKQRLNELD 469


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/683 (34%), Positives = 387/683 (56%), Gaps = 58/683 (8%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S LI   A +G    L  +R +F  +    + +W  L+  Y + +  +EA+ ++   L  
Sbjct: 192 SALIDMLARNG---DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLED 248

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGY 159
           G   P+ +T   ++++C  L S + G Q+H   ++ G   D  +   L+  Y+   I   
Sbjct: 249 GF-EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQA 307

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           ++ A+KVFE     D++S+  LI+GY Q  V+E    + LF +M +  I+P+  T+ ++ 
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQEN-KVMVLFGEMLNESIKPNHITYSSIL 366

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
            AC  ++D   G+Q HA V K+         +  A+++MYA+ G M              
Sbjct: 367 KACANISDHDSGRQVHAHVIKSNQAAAHT--VGNALVSMYAESGCM-------------- 410

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                             E AR++F+Q+ +R      +MIS  ++ G  +      G+M+
Sbjct: 411 ------------------EEARRVFNQLYER------SMISCITE-GRDAPLDHRIGRMD 445

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
            +GI     T  +++ A   +G L  G++LH   ++   FG + F++ +++ MY++CG +
Sbjct: 446 -MGISSS--TFASLISAAASVGMLTKGQQLHAMTLK-AGFGSDRFVSNSLVSMYSRCGYL 501

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A   F ++ K+   +S + S+ISGLA+HG  E ++++F +M L G+KP+ VT++ VL 
Sbjct: 502 EDACRSFNEL-KDRNVIS-WTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLS 559

Query: 458 ACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH GLV EGK++F SM  ++G+ P+MEHY CMVDLLAR G + EA   I  MP  A++
Sbjct: 560 ACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADA 619

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           ++W+ LL ACR H N ++GEIA + +++LEP   A YVLLSN+ A+   W+E  ++R  M
Sbjct: 620 LVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAM 679

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
            D+ + K  G S++E   T H F A   SHP+ ++I   L  +  ++K  GYVP+T  V+
Sbjct: 680 RDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVL 739

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            D+ +E KE  +  HSEK+A+AFGLI + + + IRI KNLR+C DCH A K +S+  RRE
Sbjct: 740 HDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRRE 799

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I++RD+ RFH  K G CSC ++W
Sbjct: 800 IILRDSNRFHRMKDGECSCGEYW 822



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 127/529 (24%), Positives = 226/529 (42%), Gaps = 68/529 (12%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+++      S++  LQ+H   +  G  +    S  L+  +A S  +  +  +  +F +
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFER 317

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQ-EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +   ++  W  L+ GY +S   + + +VL+  ML++ I  PN+ T+  +L +CA +S   
Sbjct: 318 MRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESI-KPNHITYSSILKACANISDHD 376

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           SG Q+H H+IK        + NAL+  Y+  G +  A +VF     R ++S  T      
Sbjct: 377 SGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCIT------ 430

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                 P      +M    +   + TF ++ SA   +     G+Q HA+  K     GS+
Sbjct: 431 -EGRDAPLDHRIGRMD---MGISSSTFASLISAAASVGMLTKGQQLHAMTLK--AGFGSD 484

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +  ++++MY++CG +  A R F+ +   ++  +W+SMISG  + G  ERA        
Sbjct: 485 RFVSNSLVSMYSRCGYLEDACRSFNEL-KDRNVISWTSMISGLAKHGYAERA-------- 535

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                  L LF  M   G+ P++VT +AVL AC  +G +  GK 
Sbjct: 536 -----------------------LSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE 572

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL-FNSIISGLA 425
             +    +      +     ++D+ A+ G +  AL    ++P  LK  +L + +++    
Sbjct: 573 YFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMP--LKADALVWKTLLGACR 630

Query: 426 QHGLGET-SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ- 483
            H   E   IA    +EL    P     ++ L A    GL +E  +   +M +  +  + 
Sbjct: 631 SHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYA--DAGLWDEVARIRSAMRDNNLNKET 688

Query: 484 ----MEHYGCMVDLLARD----------GRLDEAYGLIQSMPYDANSVI 518
               ME      +  A D          G+LD   G I+ M Y  ++ I
Sbjct: 689 GLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSI 737



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 174/369 (47%), Gaps = 40/369 (10%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLVSYNTLINGYAQVKEPCPALWLF 198
           L+ D  + N+L+  YS  G + +A  VF+G    RD+VS+  + +  A+      +L L 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLI 139

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M +S + P+A+T  A+  AC       +       +   +G  G+++ + +A+I+M A
Sbjct: 140 GEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLA 199

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           + G +  A +VF                     +G IE+            +V WT +IS
Sbjct: 200 RNGDLASARKVF---------------------DGLIEKT-----------VVVWTLLIS 227

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
            Y Q     +A+E+F      G  PD  TM +++ AC  LG++  G +LH   +  + F 
Sbjct: 228 RYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR-MGFA 286

Query: 379 RNIFLTTAVIDMYAKCG---SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            +  ++  ++DMYAK     ++D A  VF ++ KN   V  + ++ISG  Q G+ E  + 
Sbjct: 287 SDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKN--DVISWTALISGYVQSGVQENKVM 344

Query: 436 V-FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
           V F EM    +KP+ +T+ ++L AC++    + G+Q    ++             +V + 
Sbjct: 345 VLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMY 404

Query: 495 ARDGRLDEA 503
           A  G ++EA
Sbjct: 405 AESGCMEEA 413



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 30/266 (11%)

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-RDLVSWTAMISGYSQVGGFSQALELF 333
           + +     +S+++ Y+R G +  AR +FD M   RD+VSWTAM S  ++ G   ++L L 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLI 139

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV-----------VFGRNIF 382
           G+M   G+ P+  T+ AV  AC            H+ Y               ++G +I 
Sbjct: 140 GEMLESGLLPNAYTLCAVAHACFP----------HELYCLVGGVVLGLVHKMGLWGTDIA 189

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           + +A+IDM A+ G + +A  VF  + +  KTV ++  +IS   Q    E ++ +F +   
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIE--KTVVVWTLLISRYVQGECAEEAVEIFLDFLE 247

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR---DGR 499
            G +PD  T  +++ AC+  G V  G Q     L  G          +VD+ A+   +  
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQA 307

Query: 500 LDEAYGLIQSMPYDANSVI-WRALLA 524
           +D A  + + M    N VI W AL++
Sbjct: 308 MDYANKVFERM--RKNDVISWTALIS 331



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
           HP +V+ +    A  G   L  G+ LH++ +   +  R+  +  +++ +Y++CG++ +A 
Sbjct: 47  HPSDVSALLAAAARAG--DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASAR 104

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
           +VF  + + L+ +  + ++ S LA++G    S+ +  EM   GL P+  T    LCA +H
Sbjct: 105 NVFDGM-RGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYT----LCAVAH 159

Query: 462 GGLVEE--------GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
                E               M  +G    +     ++D+LAR+G L  A  +   +  +
Sbjct: 160 ACFPHELYCLVGGVVLGLVHKMGLWGTDIAVG--SALIDMLARNGDLASARKVFDGL-IE 216

Query: 514 ANSVIWRALLA 524
              V+W  L++
Sbjct: 217 KTVVVWTLLIS 227


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 350/608 (57%), Gaps = 49/608 (8%)

Query: 119 CARLSSFKSGCQIHCHIIKFG-LEFD----LFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
           C R  +   G  IH H+   G L  D    LF+ N+L   Y+ FG +++A ++F+G   R
Sbjct: 74  CVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVR 133

Query: 174 DLVSYNTLINGYAQVK-EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           ++V++ T++   A        AL     M+   + P+A+TF ++  ACT    P +    
Sbjct: 134 NVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTT---PGMLTAV 190

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA   K                                   G+       SS+I  Y + 
Sbjct: 191 HASTVK----------------------------------AGLDSDVFVRSSLIDAYVKL 216

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G ++  R++FD+M  RDLV W ++I+G++Q G    A+ELF +M+  G   ++ T+ +VL
Sbjct: 217 GDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVL 276

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           RAC G+  L+ G+++H   ++   + R++ L  A++DMY KCGS++ A ++F+++P+  +
Sbjct: 277 RACTGMVMLEAGRQVHAHVLK---YDRDLILHNALLDMYCKCGSLEDADALFHRMPQ--R 331

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +++++SGLAQ+G    ++ VF  M+  G+ P+ VT V VL ACSH GLVE+G  +F
Sbjct: 332 DVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYF 391

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
            SM   +GI+P+ EH+ CMVDLL R G+LDEA   I  M  + +SVIWR LL ACR+H+N
Sbjct: 392 RSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKN 451

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
           A +   A +++L LEPD     VLLSN  A+  +W +A +  K M D G++K PG S+IE
Sbjct: 452 ASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIE 511

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
               +H F+A   SHP +  I   L  +  ++KS GYVP T  V+ D+  E+KE ++ YH
Sbjct: 512 LEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYH 571

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEK+A+ FG +++   + IRI KNLRICGDCH   KL+S+   R I++RD +RFH F+ G
Sbjct: 572 SEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDG 631

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 632 ACSCGDYW 639



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 221/468 (47%), Gaps = 54/468 (11%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           + + ++ HG + H G      S+ L S +A  G  +   R   +F  +   N+  W T++
Sbjct: 86  IHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR---MFDGMPVRNVVTWTTVV 142

Query: 81  RGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
              + +D   QEAL    +M   G V+PN +TF  VL +C       +   +H   +K G
Sbjct: 143 AALASADGRKQEALRFLVAMRRDG-VAPNAYTFSSVLGACTTPGMLTA---VHASTVKAG 198

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           L+ D+F+R++LI  Y   G ++   +VF+  + RDLV +N++I G+AQ  +   A+ LF 
Sbjct: 199 LDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFM 258

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M+D+    +  T  ++  ACT +     G+Q HA V K       +++L  A+++MY K
Sbjct: 259 RMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK----YDRDLILHNALLDMYCK 314

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CG +  A+ +F  M   +   +WS+M+SG  + GK                         
Sbjct: 315 CGSLEDADALFHRMP-QRDVISWSTMVSGLAQNGK------------------------- 348

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
                   +AL +F  M+S G+ P+ VTMV VL AC   G ++ G   H       +FG 
Sbjct: 349 ------SVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDG--WHYFRSMKRLFGI 400

Query: 380 NIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
                    ++D+  + G +D A+   + +     +V ++ +++     H     S+A +
Sbjct: 401 QPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSV-IWRTLLGACRMH--KNASLAAY 457

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVE--EGKQFFESMLNYGIKPQ 483
              E++ L+PD      VL + ++  L +  + ++ +++M + G++ +
Sbjct: 458 AAREILKLEPDD-QGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKE 504



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN----IFLTTAVIDMYAKCGSIDT 399
           D V++  +++ CV  G  D G+ +H+    +     +    +F++ ++  MYAK G +D 
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQ-HGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
           AL +F  +P  ++ V  + ++++ LA   G  + ++     M   G+ P+  TF +VL A
Sbjct: 123 ALRMFDGMP--VRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           C+  G++        S +  G+   +     ++D   + G LD    +   M    + V+
Sbjct: 181 CTTPGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM-VTRDLVV 236

Query: 519 WRALLAA 525
           W +++A 
Sbjct: 237 WNSIIAG 243


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 340/568 (59%), Gaps = 47/568 (8%)

Query: 154 YSIFGYI-NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
           Y++F ++ + A+ VF      ++ ++NT+  GYA+   P PAL  +R+M  S I+PD  T
Sbjct: 73  YNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHT 132

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           +  +  A ++  + R G+  H+V  +N     S + ++ +++++YA CG           
Sbjct: 133 YPFLLKAISKSLNVREGEAIHSVTIRN--GFESLVFVQNSLLHIYAACG----------- 179

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                  E A  +F+ M  RDLV+  ++I+G++  G  S+AL L
Sbjct: 180 ---------------------DTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTL 218

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M + G+ PD  T+V++L A   LGAL+ G+R+H  Y+  V    N  +T +++D+YA
Sbjct: 219 FREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHV-YLLKVGLRENSHVTNSLLDLYA 277

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KC +I       ++  +N  +   + S+I GLA +G GE ++ +FREME  GL P  +TF
Sbjct: 278 KCDAI-------WEXERNAVS---WTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITF 327

Query: 453 VTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           V VL ACSH G+++EG  +F  M   +GI P++EHYGCMVDLL+R G + +AY  IQ+MP
Sbjct: 328 VGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMP 387

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
              N+V WR LL AC +H +  +GE A   LL LEP H   YVLLSN+     RW + + 
Sbjct: 388 VQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQL 447

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           +R+ M   G++K  G+S +E    ++ F    +SHPQ++++  +L+ +T  LK  GYVP+
Sbjct: 448 IRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPH 507

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V+ D++EEEKE  +SYHSEK A+AF  +N+    TIR+ KNLR+C DCH+A KL+++
Sbjct: 508 TANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAK 567

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +Y REI++RD  RFH F+ G+CSC D+W
Sbjct: 568 VYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 186/383 (48%), Gaps = 51/383 (13%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F+ I NPN+F WNT+ RGY+ SD+P  AL  Y  M+   I  P+  T+PF+L + ++  
Sbjct: 86  VFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRI-EPDTHTYPFLLKAISKSL 144

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G  IH   I+ G E  +F++N+L+H Y+  G   +AH VFE    RDLV+  ++IN
Sbjct: 145 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVIN 204

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+A    P  AL LFR+M    ++PD FT V++ SA  EL    +G++ H  + K    V
Sbjct: 205 GFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK----V 260

Query: 244 G--SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
           G   N  +  +++++YAKC  +   ER         +  +W+S+I G    G  E A +L
Sbjct: 261 GLRENSHVTNSLLDLYAKCDAIWEXER---------NAVSWTSLIVGLAVNGFGEEALEL 311

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F +M+ + LV                               P E+T V VL AC   G L
Sbjct: 312 FREMEGQGLV-------------------------------PSEITFVGVLYACSHCGML 340

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D G    ++  E       I     ++D+ ++ G +  A      +P     V+ + +++
Sbjct: 341 DEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVT-WRTLL 399

Query: 422 SGLAQH---GLGETSIAVFREME 441
                H   GLGET+ +   ++E
Sbjct: 400 GACTIHGHLGLGETARSHLLKLE 422



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 137/308 (44%), Gaps = 29/308 (9%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNG------LFRSRI 63
           LL  +    ++++   IH   + +G    +   + L+  +A  G          L R R 
Sbjct: 136 LLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRD 195

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           L + I         +++ G++ +  P EAL L+  M ++G V P+ FT   +L++ A L 
Sbjct: 196 LVAXI---------SVINGFALNGRPSEALTLFREMSAEG-VEPDGFTVVSLLSASAELG 245

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G ++H +++K GL  +  + N+L+  Y+          ++E    R+ VS+ +LI 
Sbjct: 246 ALELGRRVHVYLLKVGLRENSHVTNSLLDLYA------KCDAIWEXE--RNAVSWTSLIV 297

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A       AL LFR+M+   + P   TFV +  AC+       G  +   + +  G +
Sbjct: 298 GLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFG-I 356

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQ 300
              +     ++++ ++ GL+  A      M +  +   W +++   T  G +   E AR 
Sbjct: 357 MPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARS 416

Query: 301 LFDQMDQR 308
              +++ +
Sbjct: 417 HLLKLEPK 424


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/689 (34%), Positives = 374/689 (54%), Gaps = 59/689 (8%)

Query: 54  CKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           C      ++I+ +    P+   W  +++ Y+     + +L  +  + S GI SP+   FP
Sbjct: 22  CHVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGI-SPDRHLFP 80

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG--------------- 158
            +L +      F     +H  +I+ G  FDL+  NAL++ YS F                
Sbjct: 81  SLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHN 140

Query: 159 -------YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAF 211
                   I++  K+F+    RD+VS+NT+I G AQ      AL + ++M    ++PD+F
Sbjct: 141 HNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSF 200

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T  ++    TE  +   GK+ H    ++      ++ + +++I+MYAKC           
Sbjct: 201 TLSSILPIFTEHANVTKGKEIHGYAIRH--GFDKDVFIGSSLIDMYAKCT---------- 248

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                                 ++E +   F  +  RD +SW ++I+G  Q G F Q L 
Sbjct: 249 ----------------------QVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLG 286

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
            F +M    + P +V+  +V+ AC  L AL+ GK+LH  YI  + F  N F+ ++++DMY
Sbjct: 287 FFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHA-YIIRLGFDDNKFIASSLLDMY 345

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKCG+I  A  +F KI    + +  + +II G A HG    ++++F EM + G+KP  V 
Sbjct: 346 AKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVA 405

Query: 452 FVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+ VL ACSH GLV+EG ++F SM  ++G+ P +EHY  + DLL R GRL+EAY  I +M
Sbjct: 406 FMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNM 465

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
             +    +W  LLAACR H+N ++ E    K+L ++P +   +V++SN+ +   RW +A 
Sbjct: 466 GEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAA 525

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           ++R  M  +G++K P  S+IE    +H FLA  KSHP   +I   L  +  +++  GYV 
Sbjct: 526 KLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVL 585

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +T +V+ DVDEE K  ++  HSE+LA+AFG+I++ S  TIR+ KN+R+C DCH A K ++
Sbjct: 586 DTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMA 645

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +I  REI+VRD  RFH FK G+CSC D+W
Sbjct: 646 KIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 157/345 (45%), Gaps = 23/345 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFA------LSGCKNGLFRS 61
           SS+L +     ++ +  +IHG  +  G +  +   S LI  +A      LS C       
Sbjct: 203 SSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCA------ 256

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
              F  + N +   WN+++ G  ++    + L  +  ML K  V P   +F  V+ +CA 
Sbjct: 257 ---FHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRML-KEKVKPMQVSFSSVIPACAH 312

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG--SLARDLVSYN 179
           L++   G Q+H +II+ G + + FI ++L+  Y+  G I  A  +F       RD+VS+ 
Sbjct: 313 LTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWT 372

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I G A       A+ LF +M    ++P    F+A+ +AC+       G ++   + ++
Sbjct: 373 AIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRD 432

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G V   +    AV ++  + G +  A    S MG   + + WS++++       IE A 
Sbjct: 433 FG-VAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAE 491

Query: 300 QLFDQM---DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           ++ +++   D  ++ +   M + YS    +  A +L  +M   G+
Sbjct: 492 KVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGL 536


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/619 (36%), Positives = 354/619 (57%), Gaps = 47/619 (7%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           L+ D F  NAL+  Y+  G I N    F+    RD VSYNT I G++    P  +L LF+
Sbjct: 85  LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH-AVVYKN-LGCVGSNMLLKTAVINMY 257
           +MQ    +P  +T V++ +A  +L D R GKQ H +++ +N LG    N+ +  A+ +MY
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLG----NVFIWNALTDMY 200

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG------------------------ 293
           AKCG +  A  +F  +   K+  +W+ MISGY + G                        
Sbjct: 201 AKCGEIEQARWLFDCL-TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM 259

Query: 294 -----------KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                      +++ AR++F +  ++D+V WTAM+ GY++ G    AL LF +M    I 
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE 319

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD  T+ +V+ +C  L +L  G+ +H + I       N+ +++A+IDMY+KCG ID A S
Sbjct: 320 PDSYTLSSVVSSCAKLASLHHGQAVHGKSIL-AGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +P   + V  +N++I G AQ+G  + ++ +F  M     KPD VTF+ +L AC H 
Sbjct: 379 VFNLMPT--RNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
             +E+G+++F+S+ N +G+ P ++HY CMV+LL R GR+++A  LI++M +D + +IW  
Sbjct: 437 NWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL+ C    +    E+A + L +L+P     Y++LSNM A   RW++   VR LM    +
Sbjct: 497 LLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G+S+IE +  +HRF +  ++HP++++I   L  +  KL+  G+ PNT  V+ DV E
Sbjct: 557 KKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGE 616

Query: 642 EEKETVVSYHSEKLALAFGLINSRSK-ETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           +EK   + +HSEKLALAFGLI   +    IRI KN+RIC DCH   K  S I  R+I++R
Sbjct: 617 DEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILR 676

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D+ RFH F  G CSC D W
Sbjct: 677 DSNRFHHFSTGKCSCNDNW 695



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 143/266 (53%), Gaps = 8/266 (3%)

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           ++  L   ++++YAK G +  A+ +F  M + +   +W++++S Y + G I+  +  FD+
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKM-LKRDXFSWNALLSAYAKSGSIQNLKATFDR 114

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD VS+   I+G+S      ++LELF +M+  G  P E T+V++L A   L  L +G
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYG 174

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K++H   I     G N+F+  A+ DMYAKCG I+ A  +F  + K  K +  +N +ISG 
Sbjct: 175 KQIHGSIIVRNFLG-NVFIWNALTDMYAKCGEIEQARWLFDCLTK--KNLVSWNLMISGY 231

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A++G  E  I +  +M L G  PD VT  T++ A    G V+E ++ F       I    
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC-- 289

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSM 510
             +  M+   A++GR ++A  L   M
Sbjct: 290 --WTAMMVGYAKNGREEDALLLFNEM 313



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 221/490 (45%), Gaps = 79/490 (16%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           H+ LL L      L+ A  +  +++        S + L+S +A SG    L   +  F +
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLKRDX---FSWNALLSAYAKSGSIQNL---KATFDR 114

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   +NT + G+S +  PQE+L L+  M  +G   P  +T   +LN+ A+L   + 
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGF-EPTEYTIVSILNASAQLLDLRY 173

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH  II      ++FI NAL   Y+  G I  A  +F+    ++LVS+N +I+GYA+
Sbjct: 174 GKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK 233

Query: 188 VKEPCPALWLFRKMQDSCIQPDAF---TFVAMFSACTELNDPRIGKQFHAVVYKNLGC-- 242
             +P   + L  +M+ S   PD     T +A +  C  +++ R  + F     K++ C  
Sbjct: 234 NGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEAR--RVFSEFKEKDIVCWT 291

Query: 243 ---VG--------------SNMLLK---------TAVINMYAKCGLMNMAERVFST---M 273
              VG              + MLL+         ++V++  AK   ++  + V       
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           G++ +    S++I  Y++ G I+ AR +F+ M  R++VSW AMI G +Q G    ALELF
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M      PD VT + +L AC+    ++ G    Q+Y +++    N    T  +D YA 
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQG----QEYFDSI---SNQHGMTPTLDHYA- 463

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
                                     +++ L + G  E ++A+ +    M   PD + + 
Sbjct: 464 -------------------------CMVNLLGRTGRIEQAVALIKN---MAHDPDFLIWS 495

Query: 454 TVLCACSHGG 463
           T+L  CS  G
Sbjct: 496 TLLSICSTKG 505



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 153/311 (49%), Gaps = 8/311 (2%)

Query: 36  LNHHISSSQLISFFALSGCKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALV 94
           L+ H+     +S    + C+ G +  +R +FS+    +I  W  +M GY+++   ++AL+
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 95  LYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154
           L+  ML + I  P+++T   V++SCA+L+S   G  +H   I  GL  +L + +ALI  Y
Sbjct: 309 LFNEMLLEHI-EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           S  G+I++A  VF     R++VS+N +I G AQ      AL LF  M     +PD  TF+
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
            + SAC   N    G+++   +    G +   +     ++N+  + G +  A  +   M 
Sbjct: 428 GILSACLHCNWIEQGQEYFDSISNQHG-MTPTLDHYACMVNLLGRTGRIEQAVALIKNMA 486

Query: 275 MSKSTAAWSSMISGYTREGKIER----ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
                  WS+++S  + +G I      AR LF ++D    V +  + + Y+ +G +    
Sbjct: 487 HDPDFLIWSTLLSICSTKGDIVNAEVAARHLF-ELDPTIAVPYIMLSNMYASMGRWKDVA 545

Query: 331 ELFGKMESLGI 341
            +   M+S  +
Sbjct: 546 SVRNLMKSKNV 556



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 43/254 (16%)

Query: 355 CVGLGALDFGKRLHQQYIENVVF-GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK---- 409
           CV    ++  KRL Q ++E+ +F   + FL   ++ +YAK G +  A ++F K+ K    
Sbjct: 32  CVRTNEINQAKRL-QSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXF 90

Query: 410 ----------------NLK----------TVSLFNSIISGLAQHGLGETSIAVFREMELM 443
                           NLK          +VS +N+ I+G + +   + S+ +F+ M+  
Sbjct: 91  SWNALLSAYAKSGSIQNLKATFDRMPFRDSVS-YNTTIAGFSGNSCPQESLELFKRMQRE 149

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G +P   T V++L A +    +  GKQ   S++       +  +  + D+ A+ G +++A
Sbjct: 150 GFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQA 209

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
             L   +    N V W  +++    +   +  IG +   +L    PD     V +S ++A
Sbjct: 210 RWLFDCLT-KKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ----VTMSTIIA 264

Query: 562 ---ETYRWEEARQV 572
              +  R +EAR+V
Sbjct: 265 AYCQCGRVDEARRV 278


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 321/551 (58%), Gaps = 42/551 (7%)

Query: 174 DLVSYNTLINGYAQVKEP--CP--ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
           D+V YNTL+ GYA+      C   A  +F +M +  + PD +TFV++  AC        G
Sbjct: 98  DVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +Q H V  K       +  +   +INMYA+CG                            
Sbjct: 158 RQAHGVAVK--AGAAEHEYVAPTLINMYAECG---------------------------- 187

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                +  AR +FD+MD   +VS+ AMI+   +     +AL LF +M++ G+ P  VT++
Sbjct: 188 ----DVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLI 243

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL AC  LGAL+ G+ +H  YI  +     + + TA+IDMYAKCGS++ A+ VF  +  
Sbjct: 244 SVLSACALLGALELGRWIHD-YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMES 302

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K    ++ ++   A HG G  +I++F EM+  G+KPD VTF+ VL ACSH G+V EG 
Sbjct: 303 RDKQA--WSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           Q+F+SM  YGI   ++HYGC+ DLLAR G+L+ AY  I  +P    +++WR LL+AC  H
Sbjct: 361 QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGH 420

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            +  +G+   +++L+L+  HG  YV+ SN+ A T RWEE   VRKLM + G+ K PG S 
Sbjct: 421 GDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSS 480

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV-FDVDEEEKETVV 648
           IE +  +H F A   SHP ++E   M+ ++  +LK  GYVPNT  V   ++ EEEK T +
Sbjct: 481 IEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSL 540

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
            YHSEKLA++FGL+N+    T+RI KNLR+C DCH   KL+S ++ R I++RD  RFH F
Sbjct: 541 RYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHF 600

Query: 709 KKGNCSCMDFW 719
           + G CSC D+W
Sbjct: 601 EDGVCSCGDYW 611



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 192/409 (46%), Gaps = 50/409 (12%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSG--LNHHIS-SSQLISFFALSGCKNG--LFRSRILF 65
           LLA L  C SL+   Q+H   V +G  L  H +  ++L++     G +    L  +R +F
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 66  SQIDNPNIFIW-NTLMRGYSRSDS----PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            +I +P   +W NTL+RGY+R        +EA  ++  M+ +G V+P+ +TF  +L +CA
Sbjct: 91  DRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEG-VAPDTYTFVSLLKACA 149

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              + + G Q H   +K G     ++   LI+ Y+  G +  A  +F+      +VSYN 
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I    +   P  AL LFR+MQ   ++P + T +++ SAC  L    +G+  H  + K  
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR 269

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + S + + TA+I+MYAKCG +  A  VF  M  S+   AWS M+  Y   G    A  
Sbjct: 270 --LDSLVKVNTALIDMYAKCGSLEDAIGVFQDM-ESRDKQAWSVMMVAYANHGYGREAIS 326

Query: 301 LFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLG---------------- 340
           +F++M ++    D V++  ++   S  G  S+ L+ F  M   G                
Sbjct: 327 MFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLA 386

Query: 341 ----------------IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                           I P  +    +L AC G G +D GKR+ ++ +E
Sbjct: 387 RSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILE 435



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 125/233 (53%), Gaps = 9/233 (3%)

Query: 298 ARQLFDQMDQR-DLVSWTAMISGYSQVGGF----SQALELFGKMESLGIHPDEVTMVAVL 352
           ARQ+FD++    D+V +  ++ GY++ G       +A  +F +M   G+ PD  T V++L
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC    A + G++ H   ++      + ++   +I+MYA+CG +  A  +F ++  + +
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGA-AEHEYVAPTLINMYAECGDVRAARVMFDRM--DGE 202

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +N++I+   +  L   ++ +FREM+  GLKP  VT ++VL AC+  G +E G+   
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           + +    +   ++    ++D+ A+ G L++A G+ Q M    +   W  ++ A
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVA 314


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 342/609 (56%), Gaps = 44/609 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +L  C  +  FK   Q+H HI+K GL +D F  + L+   ++  +G +  A  +F     
Sbjct: 36  LLKRCKSMEEFK---QVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEE 92

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                YNT+I G         AL L+ +M +  I+PD FT+  +  AC+ L   + G Q 
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQI 152

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA V+K    +  ++ ++  +INMY KCG                               
Sbjct: 153 HAHVFK--AGLEGDVFVQNGLINMYGKCG------------------------------- 179

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVAV 351
             IE A  +F+QMD++ + SW+++I  ++ V  + + L L G M   G H  +E  +V+ 
Sbjct: 180 -AIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSA 238

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  LG+ +FG+ +H   + N+    N+ + T++IDMY K GS++  L VF  + +  
Sbjct: 239 LSACTHLGSPNFGRCIHGILLRNIS-ELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQ-- 295

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K    +  II+GLA HG G  +++VF +M   GL PD V +V VL ACSH GLV EG Q 
Sbjct: 296 KNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQC 355

Query: 472 FESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  +   + IKP ++HYGCMVDL+ R G L  AY LI+SMP   N V+WR+LL+AC++H 
Sbjct: 356 FNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHH 415

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N +IGEIA + +  L   +   Y++L+NM A   +W +  ++R  M +  + + PG+S +
Sbjct: 416 NLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLV 475

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E N  +++F++  KS PQ + I  M++ M  +LK  GY P+  QV+ DVDE+EK   + +
Sbjct: 476 EANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKH 535

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HS+KLA+AF LI +     IRI++N+R+C DCH   K +S IY REI VRD  RFH FK 
Sbjct: 536 HSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKD 595

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 596 GTCSCKDYW 604



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/422 (30%), Positives = 210/422 (49%), Gaps = 47/422 (11%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL+ CKS+++  Q+H  I+  GL +     S L++  ALS   +  +   I F QI+ 
Sbjct: 34  LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSI-FRQIEE 92

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P  F +NT++RG   S + +EAL+LY  ML +GI  P+NFT+PFVL +C+ L + K G Q
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGI-EPDNFTYPFVLKACSLLGALKEGVQ 151

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH H+ K GLE D+F++N LI+ Y   G I +A  VFE    + + S++++I  +A V+ 
Sbjct: 152 IHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEM 211

Query: 191 PCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               L L   M  +   + +    V+  SACT L  P  G+  H ++ +N+  +  N+ +
Sbjct: 212 WHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISEL--NVAV 269

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           KT++I+MY K                                 G +E+   +F  M Q++
Sbjct: 270 KTSLIDMYVK--------------------------------SGSLEKGLCVFQNMAQKN 297

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
             S+T +I+G +  G   +AL +F  M   G+ PD+V  V VL AC   G ++ G     
Sbjct: 298 RYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEG----L 353

Query: 370 QYIENVVFGRNIFLTT----AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           Q    + F   I  T      ++D+  + G +  A  +   +P     V ++ S++S   
Sbjct: 354 QCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDV-VWRSLLSACK 412

Query: 426 QH 427
            H
Sbjct: 413 VH 414


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/620 (37%), Positives = 355/620 (57%), Gaps = 13/620 (2%)

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           I  P    +  +L  C +  + K G Q+H HI   G    L+I N L+  Y+  G + +A
Sbjct: 114 IEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDA 172

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            KVF+  + RDL S+N +I+GY +      A  LF KM +     D F++ A+ S C + 
Sbjct: 173 EKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQH 228

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS---TMGMSKSTA 280
           N P    + + ++ K+     SN    ++ +   A    ++M +++      MG+     
Sbjct: 229 NRPEEALELYRLMQKH-DYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEV 287

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            W S++  Y + G IE AR +FD+M++RD+VSWT MI  Y + G   +   LF  + +  
Sbjct: 288 VWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSN 347

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I P++ T   VL AC  L A D GK++H  Y+  V F       +A++ MY+KCG I+ A
Sbjct: 348 IMPNDFTFAGVLNACADLAAEDLGKQIHA-YMVRVGFDSFSSAASALVHMYSKCGDIENA 406

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
            SVF  +P+    +  + S++ G AQHG  + ++  F  +   G KPDG+ F+ VL AC+
Sbjct: 407 KSVFEILPQ--PDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACA 464

Query: 461 HGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLV++G ++F S+   +G+   ++HY C++DLLAR G+  EA  +I  MP   +  IW
Sbjct: 465 HAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIW 524

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
            ALL  CR+H N ++ + A + L ++EP++ A YV L+N+ A      E   +R+ MD  
Sbjct: 525 AALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSR 584

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
           GI K PG S+IE    +H F     SHP++KEI   L +++ ++K  GYVP+T  V+ DV
Sbjct: 585 GIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDV 644

Query: 640 DEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMV 699
           + E+KE  +SYHSEKLA+AFG+I++ S   I++ KNLR C DCH A K +S I  R+I+V
Sbjct: 645 ELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIV 704

Query: 700 RDAIRFHLFKKGNCSCMDFW 719
           RD+ RFH F+ G+CSC D+W
Sbjct: 705 RDSNRFHCFEGGSCSCKDYW 724



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 213/479 (44%), Gaps = 50/479 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           LL +   C SL  A ++  ++VH  L    S + +IS +   G      ++R LF ++ N
Sbjct: 159 LLDMYAKCGSLVDAEKVFDEMVHRDL---CSWNIMISGYVKGG---NFEKARNLFDKMPN 212

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            + F W  ++ G  + + P+EAL LY  M        N  T    L + A + S   G +
Sbjct: 213 RDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKK 272

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH HI++ GL+ D  +  +L+  Y   G I  A  +F+    RD+VS+ T+I+ Y +   
Sbjct: 273 IHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGR 332

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML-- 248
                 LFR + +S I P+ FTF  + +AC +L    +GKQ HA + +    VG +    
Sbjct: 333 REEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVR----VGFDSFSS 388

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
             +A+++MY+KCG +  A+ VF  +       +W+S++ GY + G+ ++A   F      
Sbjct: 389 AASALVHMYSKCGDIENAKSVFEILPQP-DLFSWTSLLVGYAQHGQHDKALHFF------ 441

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                 EL  K    G  PD +  + VL AC   G +D G    
Sbjct: 442 ----------------------ELLLKS---GTKPDGIAFIGVLSACAHAGLVDKGLEYF 476

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
               E     R I     +ID+ A+ G    A S+  ++P       ++ +++ G   H 
Sbjct: 477 HSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKY-IWAALLGGCRIH- 534

Query: 429 LGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGI--KPQM 484
            G   +A      L  ++P+   T+VT+    +  G+  E     E+M + GI  KP M
Sbjct: 535 -GNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGM 592


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/470 (44%), Positives = 304/470 (64%), Gaps = 11/470 (2%)

Query: 253 VINMYAKC--GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           +++ Y+KC  G +N+A ++F  M   K T    +MI+ Y      E A ++F+ M ++D+
Sbjct: 19  ILSRYSKCVVGDLNLACKLFDEMP-HKDTVTLDTMITAY-----FESAYKVFELMPEKDI 72

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V+W ++I+G++  G  ++AL L+ +M S G+ PD  TMV++L AC  L  L  G+R H  
Sbjct: 73  VAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHV- 131

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y+  V   +N+    A++D+YAKCG+I  A  +F ++      VS + S+I GLA +G G
Sbjct: 132 YMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVS-WTSLIVGLAVNGFG 190

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC 489
           + ++  F++ME  GL P  +TFV VL ACSH G+V EG ++F+ M   Y I P++EHYGC
Sbjct: 191 KEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGC 250

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLL R G L EAY  IQ MP   N+VIWR LL AC +H +  +G  A  +LL LEP  
Sbjct: 251 MVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKD 310

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              YVLLSN+ A   RW +  +VR+ M   G++K PG+S +E    +H F+   ++HPQ+
Sbjct: 311 SGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQS 370

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           + I  ML +M MKLK AGYVP+T  V+ D++EEEKE+ + YHSEK+A+AF LIN+     
Sbjct: 371 EAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTP 430

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRI KNLR+C DCH A KL+S+++ R+I+VRD  RFH F+ G+CSC D+W
Sbjct: 431 IRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 46/297 (15%)

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
           I  Y  +A+KVFE    +D+V++N++ING+A   +P  AL L+++M    ++PD FT V+
Sbjct: 53  ITAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVS 112

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + SAC EL    +G++ H  + K +G +  N+    A++++YAKCG ++ A ++F  MG+
Sbjct: 113 LLSACAELATLVLGRRAHVYMVK-VG-LNKNLHANNALLDLYAKCGTISEARKIFDEMGI 170

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF-SQALELFG 334
            ++  +W+S+I G                                  V GF  +ALE F 
Sbjct: 171 ERNVVSWTSLIVGLA--------------------------------VNGFGKEALEHFK 198

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFG----KRLHQQYIENVVFGRNIFLTTAVIDM 390
            ME  G+ P E+T V VL AC   G ++ G    KR+ +QY  ++V    I     ++D+
Sbjct: 199 DMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQY--DIV--PRIEHYGCMVDL 254

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
             + G +  A      +P     V ++ +++     H  G   +  F    L+ L+P
Sbjct: 255 LGRAGLLKEAYDYIQDMPLQPNAV-IWRTLLGACTIH--GHLGLGAFARARLLQLEP 308



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 172/372 (46%), Gaps = 42/372 (11%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +   +I  WN+++ G++ +  P EAL LY  M S+G V P+ FT   +L++CA L+
Sbjct: 63  VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEG-VEPDGFTMVSLLSACAELA 121

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF-EGSLARDLVSYNTLI 182
           +   G + H +++K GL  +L   NAL+  Y+  G I+ A K+F E  + R++VS+ +LI
Sbjct: 122 TLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLI 181

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LND-----PRIGKQFHA 234
            G A       AL  F+ M+   + P   TFV +  AC+    +N+      R+ +Q+  
Sbjct: 182 VGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDI 241

Query: 235 VV-YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM-----ISG 288
           V   ++ GC          ++++  + GL+  A      M +  +   W ++     I G
Sbjct: 242 VPRIEHYGC----------MVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHG 291

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           +   G   RAR L  Q++ +D   +  + + Y+    +S   E+   M S G+       
Sbjct: 292 HLGLGAFARARLL--QLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGV------- 342

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK---CGSIDTALSVFY 405
               R   G   ++ G  +H+  + +    ++  +   +++M  K    G +    +V  
Sbjct: 343 ----RKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLA 398

Query: 406 KIPKNLKTVSLF 417
            I +  K  +LF
Sbjct: 399 DIEEEEKESALF 410


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 352/620 (56%), Gaps = 12/620 (1%)

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163
           I  P+   +  ++ SC +    + G ++H HI   G    LFI N L+  Y+    + ++
Sbjct: 65  IDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDS 124

Query: 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223
            K+F+    RDL S+N LI+GYA++     A  LF KM +     D F++ AM S     
Sbjct: 125 QKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER----DNFSWTAMISGYVRH 180

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTA 280
           + P    +   ++ K      SN    ++ +   A    + + + +   +   G+     
Sbjct: 181 DRPNEALELFRMM-KRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEV 239

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            WS++   Y + G IE AR +FD+M  RD+V+WTAMI  Y Q G   +  +LF  +   G
Sbjct: 240 VWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSG 299

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I P+E T   VL AC    + + GK++H  Y+  V F    F  +A++ MY+KCG++ +A
Sbjct: 300 IRPNEFTFSGVLNACANQTSEELGKKVHG-YMTRVGFDPFSFAASALVHMYSKCGNMVSA 358

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             VF + P+    +  + S+I+G AQ+G  + +I  F  +   G +PD +TFV VL AC+
Sbjct: 359 ERVFKETPQ--PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACA 416

Query: 461 HGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLV++G  +F S+   YG+    +HY C++DLLAR G+ DEA  +I  M    +  +W
Sbjct: 417 HAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLW 476

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
            +LL  CR+H N K+ + A + L ++EP++ A YV L+N+ A    W E  ++RK MDD 
Sbjct: 477 ASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDR 536

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
           G+ K PG S+I     +H FL    SHP++KEI   L  ++ ++K  G+VP+T  V+ DV
Sbjct: 537 GVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDV 596

Query: 640 DEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMV 699
           ++E+KE  +SYHSEKLA+AFG+I++     I++ KNLR C DCH A K +S+I  R+I+V
Sbjct: 597 EDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIV 656

Query: 700 RDAIRFHLFKKGNCSCMDFW 719
           RD+ RFH F+ G+CSC D+W
Sbjct: 657 RDSNRFHFFEDGHCSCRDYW 676



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 48/473 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           LL +   C SL  + ++  ++    L    S + LIS +A  G    L  ++ LF ++  
Sbjct: 111 LLEMYAKCDSLMDSQKLFDEMPERDL---CSWNILISGYAKMGL---LQEAKSLFDKMPE 164

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            + F W  ++ GY R D P EAL L+  M        N FT    L + A +   + G +
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH +I++ GL+ D  + +AL   Y   G I  A  +F+  + RD+V++  +I+ Y Q   
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN--ML 248
                 LF  +  S I+P+ FTF  + +AC       +GK+ H  + +    VG +    
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTR----VGFDPFSF 340

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
             +A+++MY+KCG M  AERVF          +W+S+I+GY + G+ + A + F      
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETPQP-DLFSWTSLIAGYAQNGQPDEAIRYF------ 393

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                 EL  K    G  PD +T V VL AC   G +D G    
Sbjct: 394 ----------------------ELLVKS---GTQPDHITFVGVLSACAHAGLVDKGLDYF 428

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
               E             +ID+ A+ G  D A ++  K+        L+ S++ G   H 
Sbjct: 429 HSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKF-LWASLLGGCRIH- 486

Query: 429 LGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
            G   +A      L  ++P+   T+VT+    +  G+  E  +  ++M + G+
Sbjct: 487 -GNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGV 538


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/662 (35%), Positives = 365/662 (55%), Gaps = 43/662 (6%)

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R  F ++   +I  WN L+  Y  +       + +  ML +GI +P        L++C  
Sbjct: 15  RKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGI-NPGEVGISIFLSACTD 73

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
                 G  I   I+  G+E +  ++ AL+  Y   G+  +A  VF     RD+V+++ +
Sbjct: 74  AREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAM 133

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           +  YA+   P  AL LFR+M    + P+  T V+   AC  L D R G   H  V     
Sbjct: 134 VAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQ-- 191

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            + S +++ TA++N+Y KCG                                +IE A + 
Sbjct: 192 GIQSGVVVGTALVNLYGKCG--------------------------------RIEAAVEA 219

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F Q+ ++++V+W+A+ + Y++      A+ +  +M+  G+ P+  T V+VL AC  + AL
Sbjct: 220 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAAL 279

Query: 362 DFGKRLHQQYIENVVFG---RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
             G+R+H++    V+ G    ++++ TA+++MY+KCG++  A  +F KI  +L  V L+N
Sbjct: 280 KQGRRIHER--TQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLV-LWN 335

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
           S+I+  AQHG  E ++ +F  M L GL+P  +TF +VL ACSH G++++G++ F S + +
Sbjct: 336 SLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGD 395

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI P+ EH+GCMVDLL R G + ++  L+  MP++ + V W A L ACR +RN      
Sbjct: 396 HGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIW 455

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
           A + L  L+P   A YVLLSNM A+  RW +  ++R+ M      K  G S+IE    +H
Sbjct: 456 AAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVH 515

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F++    HP+  EI   L+ +T  +K AGYVP+T  V+ DV +E KE +V YHSEKLA+
Sbjct: 516 EFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAM 575

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           AF L+ +     IR+ KNLR+C DCH A K +S++  REI+VRD  RFH F+ G CSC D
Sbjct: 576 AFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGD 635

Query: 718 FW 719
           +W
Sbjct: 636 YW 637



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 126/251 (50%), Gaps = 11/251 (4%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           M+S Y++ G I   R+ FD+M   D+VSW A+I+ Y     F +    F  M   GI+P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           EV +   L AC     +  G+ + Q  I          + TA++ MY K G    A SVF
Sbjct: 61  EVGISIFLSACTDAREITIGRSI-QLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++    + V  ++++++  A++G    ++ +FR+M+L G+ P+ VT V+ L AC+  G 
Sbjct: 120 LRMSH--RDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 177

Query: 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRA 521
           +  G    + +   GI+  +     +V+L  + GR++   EA+G I     + N V W A
Sbjct: 178 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI----VEKNVVAWSA 233

Query: 522 LLAA-CRLHRN 531
           + AA  R  RN
Sbjct: 234 ISAAYARNDRN 244


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 332/557 (59%), Gaps = 44/557 (7%)

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWL-----FRKMQDSCIQPDAFTFVAMFSACTEL- 223
           S+  D    NTLI  +A    P  +L L     F  M    + P+ FTF  +  AC  L 
Sbjct: 83  SVPLDAFLANTLIRAHAT--SPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALP 140

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
             P +G Q HA   K  G   ++  +   +I+MY+  G                      
Sbjct: 141 GSPDVGLQAHAAALK-FG-FATDQYVSNTLIHMYSCFG---------------------- 176

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                    G +  AR +FD+M +   V+W+AMI GY + G  S A++LF +M++ G+  
Sbjct: 177 --------GGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQA 228

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           DEVT++ VL A   LGAL+   R  ++++E    G+++ L  A+ID  AKCG +D A++V
Sbjct: 229 DEVTVIGVLAAATDLGALELA-RWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  + +  ++V  + S+I  LA  G G+ ++ VF EM++ G+ PD V F+ VL ACSH G
Sbjct: 288 FEGMQQ--RSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAG 345

Query: 464 LVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           +V+EG  +F++M + YGI+P++EHYGCMVD+  R G ++ A   +++MP   N VIWR+L
Sbjct: 346 MVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSL 405

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           ++ACR H   ++GE   + LL   P H A+Y++LSN+ A T RW+E  ++R+ M   GI+
Sbjct: 406 VSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIK 465

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PG S +E +G +H F+A  +SHPQ K+I  M+++M  +L+  G++  T +V+ D+DEE
Sbjct: 466 KVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEE 525

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           +KE  + +HSEKLA+AF L+ +     +R+ KNLR+C DCH A K +S++YRREI+VRD 
Sbjct: 526 DKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDR 585

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G+CSC DFW
Sbjct: 586 SRFHRFKDGSCSCKDFW 602



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 174/371 (46%), Gaps = 47/371 (12%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVL----YTSMLSKGIVSPNNFTFPFVLNSCARLS-SFK 126
           + F+ NTL+R ++   SP  +L L    +  ++ +G V PN FTFPF+L +CA L  S  
Sbjct: 87  DAFLANTLIRAHA--TSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPD 144

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSLARDLVSYNTLING 184
            G Q H   +KFG   D ++ N LIH YS F  G++ +A  VF+       V+++ +I G
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           Y +      A+ LFR+MQ + +Q D  T + + +A T+L    + +     V +    +G
Sbjct: 205 YVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE--GIG 262

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ L  A+I+  AKCG ++ A  VF  M   +S  +W+S+I     EG+ + A ++F++
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGM-QQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
                                          M+  G+ PD+V  + VL AC   G +D G
Sbjct: 322 -------------------------------MKVAGVPPDDVAFIGVLTACSHAGMVDEG 350

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
                           I     ++DM+ + G ++ A+     +P     V ++ S++S  
Sbjct: 351 CGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPV-IWRSLVSAC 409

Query: 425 AQHG---LGET 432
             HG   LGE+
Sbjct: 410 RAHGRLELGES 420



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 129/287 (44%), Gaps = 6/287 (2%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLF--RSRILFSQID 69
           LL++C +L  +  +  Q   + L    ++ Q +S     +  C  G F   +R +F ++ 
Sbjct: 132 LLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMP 191

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W+ ++ GY R     +A+ L+  M + G V  +  T   VL +   L + +   
Sbjct: 192 KESAVTWSAMIGGYVRGGLSSDAVDLFREMQANG-VQADEVTVIGVLAAATDLGALELAR 250

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +   + + G+   + + NALI   +  G ++ A  VFEG   R +VS+ ++I+  A   
Sbjct: 251 WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEG 310

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ +F +M+ + + PD   F+ + +AC+       G  +   +    G +   +  
Sbjct: 311 RGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYG-IEPKIEH 369

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
              +++M+ + G++  A     TM +  +   W S++S     G++E
Sbjct: 370 YGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLE 416


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/720 (32%), Positives = 384/720 (53%), Gaps = 58/720 (8%)

Query: 20  SLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           SL+  +Q+HG +   G     +  + LI  +A  G    L  +  +F  + + N+  W  
Sbjct: 232 SLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCG---ELDMAGEVFGGMRDRNVVSWTA 288

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           LM G+ +       L L   M +    +PN +T    L +C       +G  IH   ++ 
Sbjct: 289 LMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRT 348

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFE-GSLARDLVSYNTLINGYAQVKEPCPALWL 197
           G E    + ++L+  YS  G I +A +VF+   L R L ++N +I+GYA       AL +
Sbjct: 349 GYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLV 408

Query: 198 FRKM------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
           FR+M       +   QPD FTF ++  AC  L  PR G Q HA +  +     SN +L  
Sbjct: 409 FREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAG 468

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+++MY KCG                                ++  A Q+F+++++++ +
Sbjct: 469 ALVDMYVKCG--------------------------------RLPVAMQVFERLERKNAI 496

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
            WT ++ G++Q G   +ALELF +    G   D   + +++        ++ G+++H   
Sbjct: 497 QWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYG 556

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +++   G ++    +++DMY KCG  D A  +F +IP   + V  + ++I+GL +HGLG 
Sbjct: 557 VKSPA-GTDVSAGNSIVDMYLKCGLPDEAERMFREIPA--RNVVSWTTMINGLGKHGLGR 613

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCM 490
            ++A+F EM   G++PD VT++ +L ACSH GLV+E +++F  +  +  ++P+ EHY CM
Sbjct: 614 EAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACM 673

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G L EA  LI++MP +    +W+ LL+ACR+H++  +G  AG  LL ++ D+ 
Sbjct: 674 VDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNP 733

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS--KKSHPQ 608
            +YV LSN+ AE   W E  +VR  M   G++K  G S++E    +H F     +++HPQ
Sbjct: 734 VNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQ 793

Query: 609 TKEIELMLKDMTMKLKSA-GYVPNTVQ-VVFDVDEEEKETVVSYHSEKLALAFGLINS-- 664
             +I  +L+D+  +++   GY  + VQ  + DVDEE +   +  HSE+LA+   L+ +  
Sbjct: 794 AGDIRRVLRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWLLRNGV 853

Query: 665 -----RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                  ++ IR+ KNLR+CGDCH  FK LS + RR ++VRDA RFH F+ G CSC D+W
Sbjct: 854 DGGGGGHRQPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGTCSCKDYW 913



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 204/475 (42%), Gaps = 55/475 (11%)

Query: 104 IVSPNNFTFPF-------------VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
           ++  N   FPF             +L + A+ SS + G Q+H  + K G   D  + N L
Sbjct: 199 LLCTNPVAFPFPTNPMERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNL 258

Query: 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPD 209
           I  Y+  G ++ A +VF G   R++VS+  L+ G+ Q  +    L L  +M+  S   P+
Sbjct: 259 IDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPN 318

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            +T  A   AC    D   G   H +  +       + ++ ++++ +Y+K G +  A RV
Sbjct: 319 EYTLSASLKACCVTEDMGAGVGIHGLCVRT--GYEEHYVVASSLVLLYSKGGRIGDARRV 376

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F   G+ +  A W++MISGY   G    A  +F +M +R                     
Sbjct: 377 FDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQH------------- 423

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN-VVFGRNIFLTTAVI 388
                        PDE T  ++L+AC GLGA   G ++H     +      N  L  A++
Sbjct: 424 ------------QPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALV 471

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           DMY KCG +  A+ VF ++ +  K    + +++ G AQ G    ++ +FR     G + D
Sbjct: 472 DMYVKCGRLPVAMQVFERLER--KNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARAD 529

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP----QMEHYGCMVDLLARDGRLDEAY 504
                +++   +   LVE+G+Q       YG+K      +     +VD+  + G  DEA 
Sbjct: 530 AHVLSSIVGVLADFALVEQGRQVH----CYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAE 585

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQKLLDLEPDHGAHYVLLS 557
            + + +P   N V W  ++     H   +  +      +   +EPD   +  LLS
Sbjct: 586 RMFREIPAR-NVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLS 639



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 155/341 (45%), Gaps = 14/341 (4%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLN---HHISSSQLISFFALSGCKNGLFRSRI 63
           +  +LL++C  L   ++  Q+H  +  SG +   + I +  L+  +   G    L  +  
Sbjct: 429 TFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCG---RLPVAMQ 485

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F +++  N   W T++ G+++     EAL L+      G    +      ++   A  +
Sbjct: 486 VFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSG-ARADAHVLSSIVGVLADFA 544

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             + G Q+HC+ +K     D+   N+++  Y   G  + A ++F    AR++VS+ T+IN
Sbjct: 545 LVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMIN 604

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G  +      A+ +F +M+   ++PD  T++A+ SAC+        +++ + + ++   V
Sbjct: 605 GLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDR-TV 663

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                    ++++  + G +  A  +  TM M  +   W +++S       +   R+  D
Sbjct: 664 RPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGD 723

Query: 304 ---QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
               +D  + V++  + + +++ G + +  ++   M   G+
Sbjct: 724 VLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGL 764


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/684 (35%), Positives = 386/684 (56%), Gaps = 79/684 (11%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           + ++++L+ CKSL +  QIH Q++ + L NH  + S+LI+F +LSG   GL  +  +FS+
Sbjct: 7   NPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSR 66

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARLSSFK 126
           I +PN FI+  L++G+S + +P E+L+LY  MLS     S   F+ P VL +C +L +F 
Sbjct: 67  IQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFD 126

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H  ++K  L FD F+ N+++  Y  FG I  A +VF+    RD+VS+N++I GY 
Sbjct: 127 EGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +  E   A  LF +M +                                          +
Sbjct: 187 KAGEIELASELFDEMPE-----------------------------------------RD 205

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           ++   A+I+ Y KCG   +AE+VF TM   K    W+SMIS Y +     +A        
Sbjct: 206 LVSCNAMIDGYGKCGRCELAEKVFETMS-DKDVVTWTSMISAYVQNRCPMKA-------- 256

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                  L+LF +M SLG+ PD   +V+VL A   LG ++ GK 
Sbjct: 257 -----------------------LDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKW 293

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH     N +   + F+ +A+IDMY+KCG I+ A  VF  I  + + +  +NS+ISGLA 
Sbjct: 294 LHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI-SHRRNIGDWNSMISGLAI 352

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQME 485
           HGL   ++ +F EME M ++P+ +TF+ +L  CSHGGLVEEG+ +FESM   Y I P+++
Sbjct: 353 HGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ 412

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCM+DL  R GRL++A G+IQ+MP++A+ + W+A+L+A   H + +IG+ A  + ++L
Sbjct: 413 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIEL 472

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK- 604
            PD  + YVLLSN+ A+  RW++  ++R +M   G++K  G S +  BG +H FL  K+ 
Sbjct: 473 APDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXGKEL 532

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
               + ++   + ++  +LK  GY P+  QV+ D+++E KE++++ HSEK+A AFGLI+ 
Sbjct: 533 DSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAXAFGLIHI 592

Query: 665 RSKETIRITKNLRICGDCHLAFKL 688
                I I KNLRI  D    FK+
Sbjct: 593 NKSAPIHIVKNLRIV-DATQKFKV 615


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/756 (35%), Positives = 411/756 (54%), Gaps = 82/756 (10%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHI--SSSQLISFFALSGCKNG-LFRSR 62
           L+  +   LL++C  + Q   I G+I+H+     +   S+ L + F L   K G L  ++
Sbjct: 7   LQLQTFRNLLKAC--IAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQ 64

Query: 63  ILFSQIDNPNIFIWNTLMRGYSR-----------SDSPQEALVLYTSMLS----KGIVSP 107
             F     PN+F +NTL+  Y++            + PQ  +V Y ++++    +G   P
Sbjct: 65  TSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGP 124

Query: 108 ---------------NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
                          + FT   V+ +C          Q+HC ++  G +    + NA++ 
Sbjct: 125 TLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVR--QLHCFVVVCGHDCYASVNNAVLA 182

Query: 153 FYSIFGYINNAHKVF----EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
            YS  G+++ A +VF    EG   RD VS+N +I    Q +E   A+ LFR+M    ++ 
Sbjct: 183 CYSRKGFLSEARRVFREMGEGG-GRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKV 241

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC-GLMNMAE 267
           D FT  ++ +A T + D   G+QFH ++ K+ G  G N  + + +I++Y+KC G M    
Sbjct: 242 DMFTMASVLTAFTCVKDLVGGRQFHGMMIKS-GFHG-NSHVGSGLIDLYSKCAGSMVECR 299

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
           +VF  +  +     W++MISG++          L++ + +  L  W              
Sbjct: 300 KVFEEI-TAPDLVLWNTMISGFS----------LYEDLSEDGL--WC------------- 333

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
                F +M+  G  PD+ + V V  AC  L +   GK++H   I++ V    + +  A+
Sbjct: 334 -----FREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNAL 388

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           + MY+KCG++  A  VF  +P++  TVSL NS+I+G AQHG+   S+ +F  M    + P
Sbjct: 389 VAMYSKCGNVHDARRVFDTMPEH-NTVSL-NSMIAGYAQHGVEVESLRLFELMLEKDIAP 446

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           + +TF+ VL AC H G VEEG+++F  M   + I+P+ EHY CM+DLL R G+L EA  +
Sbjct: 447 NSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERI 506

Query: 507 IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566
           I++MP++  S+ W  LL ACR H N ++   A  + L LEP + A YV+LSNM A   RW
Sbjct: 507 IETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARW 566

Query: 567 EEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA 626
           EEA  V++LM + G++K PG S+IE +  +H F+A   SHP  KEI + +  M  K+K A
Sbjct: 567 EEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQA 626

Query: 627 GYVPNTVQVVF---DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
           GYVP+    +    +V+ +E+E  + YHSEKLA+AFGLI++     I + KNLRICGDCH
Sbjct: 627 GYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCH 686

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            A KL+S +  REI VRD  RFH FK+G+CSC D+W
Sbjct: 687 NAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/713 (35%), Positives = 390/713 (54%), Gaps = 65/713 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++++ + FIWN ++RGY+ +   QEA+  Y  M  +GI S +NFTFPFV+ +C  L 
Sbjct: 80  MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRS-DNFTFPFVIKACGELL 138

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G ++H  +IK G + D+++ N LI  Y   G+I  A KVF+    RDLVS+N++++
Sbjct: 139 ALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVS 198

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY    +   +L  F++M     + D F  ++   AC+  +  R G + H  V ++   +
Sbjct: 199 GYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSE--L 256

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI-------- 295
             +++++T++I+MY KCG ++ AERVF+ +  SK+  AW++MI G   + K+        
Sbjct: 257 ELDIMVQTSLIDMYGKCGKVDYAERVFNRI-YSKNIVAWNAMIGGMQEDDKVIPDVITMI 315

Query: 296 ------ERARQLFD----------QMDQRDLVSWTAMISGYSQVG--------------- 324
                  ++  L +          +M    LV  TA++  Y + G               
Sbjct: 316 NLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEK 375

Query: 325 ----------------GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                            + +AL++F  + +  + PD +T+ +VL A   L +   GK++H
Sbjct: 376 NMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIH 435

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             YI  +  G N F++ A++ MYAKCG + TA   F  +    K V  +N++I   A HG
Sbjct: 436 -SYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMV--CKDVVSWNTMIMAYAIHG 492

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
            G TSI  F EM   G KP+G TFV++L ACS  GL++EG  FF SM + YGI P +EHY
Sbjct: 493 FGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHY 552

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCM+DLL R+G LDEA   I+ MP    + IW +LLAA R H +  + E+A + +L L+ 
Sbjct: 553 GCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKH 612

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           D+   YVLLSNM AE  RWE+  +++ LM + G+ K  G S ++ NG    F+   +SH 
Sbjct: 613 DNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHA 672

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQV-VFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            T  I  +L  +  K+    Y+ +  +    DV ++   +   YHS KLA+ FGLI++  
Sbjct: 673 HTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNS-PEYHSVKLAICFGLISTAI 731

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              + + KN RIC DCH A K +S++ +REI+V DA  FH F+ G CSC D+W
Sbjct: 732 GNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 184/429 (42%), Gaps = 66/429 (15%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G + NA  +FE     D   +N +I GY        A+  + +M+   I+ D FTF  + 
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA--VINMYAKCGLMNMAERVFSTMGM 275
            AC EL    +G++ H  + K    +G ++ +     +I+MY K G + +AE+VF  M +
Sbjct: 132 KACGELLALMVGQKVHGKLIK----IGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPV 187

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQM------------------------------ 305
            +   +W+SM+SGY  +G    +   F +M                              
Sbjct: 188 -RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGME 246

Query: 306 ---------DQRDLVSWTAMISGYSQVGGFSQALELF----------------GKMESLG 340
                     + D++  T++I  Y + G    A  +F                G  E   
Sbjct: 247 IHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDK 306

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PD +TM+ +L +C   GAL  GK +H   I   +F   + L TA++DMY KCG +  A
Sbjct: 307 VIPDVITMINLLPSCSQSGALLEGKSIHGFAIRK-MFLPYLVLETALVDMYGKCGELKLA 365

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             VF ++  N K +  +N++++   Q+   + ++ +F+ +    LKPD +T  +VL A +
Sbjct: 366 EHVFNQM--NEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVA 423

Query: 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
                 EGKQ    ++  G+         +V + A+ G L  A      M    + V W 
Sbjct: 424 ELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVC-KDVVSWN 482

Query: 521 ALLAACRLH 529
            ++ A  +H
Sbjct: 483 TMIMAYAIH 491



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           + G+   G +  A  +F++M+  D   W  +I GY+  G F +A++ + +ME  GI  D 
Sbjct: 65  LCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDN 124

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            T   V++AC  L AL  G+++H + I+ + F  ++++   +IDMY K G I+ A  VF 
Sbjct: 125 FTFPFVIKACGELLALMVGQKVHGKLIK-IGFDLDVYVCNFLIDMYLKIGFIELAEKVFD 183

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++P  ++ +  +NS++SG    G G +S+  F+EM  +G K D    ++ L ACS    +
Sbjct: 184 EMP--VRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCL 241

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             G +    ++   ++  +     ++D+  + G++D A  +   + Y  N V W A++  
Sbjct: 242 RSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRI-YSKNIVAWNAMIGG 300



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 124/223 (55%), Gaps = 8/223 (3%)

Query: 3   RLVLEHSSLLALLESCK---SLKQALQIHG-QIVHSGLNHHISSSQLISFFALSGCKNGL 58
           +++ +  +++ LL SC    +L +   IHG  I    L + +  + L+  +   G    L
Sbjct: 306 KVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCG---EL 362

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +  +F+Q++  N+  WNT++  Y +++  +EAL ++  +L++ +  P+  T   VL +
Sbjct: 363 KLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPL-KPDAITIASVLPA 421

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
            A L+S   G QIH +I+K GL  + FI NA+++ Y+  G +  A + F+G + +D+VS+
Sbjct: 422 VAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSW 481

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
           NT+I  YA       ++  F +M+    +P+  TFV++ +AC+
Sbjct: 482 NTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACS 524


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 356/618 (57%), Gaps = 11/618 (1%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           SP        L S  R + F +  ++H  IIK GL         LI  Y   G + +A K
Sbjct: 6   SPTVLALKSQLFSLGRKNPFIAK-KLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALK 64

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
           +F+    +D V++ T+++       P  A  +   +    +QPD F F ++  AC  L  
Sbjct: 65  LFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGS 124

Query: 226 P--RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
              ++GKQ HA     L     + ++K+++++MYAK  L +    VF ++    S+ +W+
Sbjct: 125 VHVKLGKQLHARFL--LSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSI-FELSSISWT 181

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH- 342
           +MISGY R G+   A +LF +   ++L +WTA+ISG  Q G  + AL LF +M   G+  
Sbjct: 182 AMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSI 241

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D + + +V+ AC      + GK++H   I  + +   +F++ A++DMYAKC  +  A  
Sbjct: 242 ADPLVLSSVVGACANSAVRELGKQVHCVVI-TLGYESCLFISNALVDMYAKCSDVVAAKY 300

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           +F ++ +  K V  + SII G AQHGL E ++ ++ +M L G+KP+ VTFV ++ ACSH 
Sbjct: 301 IFCEMRR--KDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHV 358

Query: 463 GLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLV +G+  F+SM+ ++GI+P ++HY C++DL +R G LDEA  LI++MP   +   W A
Sbjct: 359 GLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAA 418

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL+AC+ H N K+       LLDL+P+  + Y+LLSN+ A    WE    VRKLM    +
Sbjct: 419 LLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEV 478

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K PG+S ++       F A + S P   EI  ++  +  +++  GYVP+T  V+ D+D+
Sbjct: 479 KKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQ 538

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           +EKE  + +HSE+LALA+GL+ +    TIRI KNLR+CGDCH   KL+S I  REI VRD
Sbjct: 539 QEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRD 598

Query: 702 AIRFHLFKKGNCSCMDFW 719
             R+H FK G CSC DFW
Sbjct: 599 VKRYHHFKDGKCSCNDFW 616



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 214/506 (42%), Gaps = 79/506 (15%)

Query: 24  ALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIWNTLMR 81
           A ++H QI+ SGLNHH      LI  +     K GL +  + LF  +   +   W T++ 
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYG----KCGLLKDALKLFDALPQQDHVAWATVLS 82

Query: 82  GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF--KSGCQIHCHIIKFG 139
             + S+ P +A  +   +L +G+  P++F F  ++ +CA L S   K G Q+H   +   
Sbjct: 83  ACNLSNLPHKAFSISLPILHEGL-QPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSP 141

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
              D  ++++L+  Y+ F   +    VF+       +S+  +I+GYA+      AL LFR
Sbjct: 142 FFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFR 201

Query: 200 K----------------MQDSCIQPDAFTFVAMFSACTELNDP----------------R 227
           +                +Q        + FV M      + DP                 
Sbjct: 202 ESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRE 261

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           +GKQ H VV   LG   S + +  A+++MYAKC  +  A+ +F  M   K   +W+S+I 
Sbjct: 262 LGKQVHCVVI-TLG-YESCLFISNALVDMYAKCSDVVAAKYIFCEM-RRKDVVSWTSIIV 318

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
           G  + G  E A  L+D M                                  G+ P+EVT
Sbjct: 319 GTAQHGLAEEALTLYDDMVLA-------------------------------GVKPNEVT 347

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
            V ++ AC  +G +  G+ L +  +E+     ++   T ++D++++ G +D A ++   +
Sbjct: 348 FVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTM 407

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
           P      + + +++S    H  G T +AV     L+ LKP+  +   +L     G  + E
Sbjct: 408 PVKPDEPT-WAALLSACKHH--GNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWE 464

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDL 493
                  ++      ++  Y C VDL
Sbjct: 465 NVSMVRKLMAVKEVKKVPGYSC-VDL 489


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/765 (32%), Positives = 397/765 (51%), Gaps = 112/765 (14%)

Query: 18  CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI-- 75
           C  LK  LQ     +   LNH      L++ +A SG    L R+R +F ++ +PN+F   
Sbjct: 36  CLILKTFLQAPPTFL---LNH------LLTAYAKSG---RLARARRVFDEMPDPNLFTRN 83

Query: 76  -----------------------------WNTLMRGYSRSDSPQEALVLYTSMLSKGIVS 106
                                        +N L+ G+S + SP  ++ LY ++L +  V 
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P   T   ++   + LS    G  +HC +++ G     F+ + L+  Y+  G I +A +V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 167 FEGSLARDLVSYNTLINGYAQVKE-------------------------------PCPAL 195
           F+   A+ +V YNTLI G  + K                                   AL
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +FR+M+   +  D +TF ++ +AC  L     GKQ HA + +       N+ + +A+++
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW--YEDNVFVGSALVD 321

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MY+KC  + +AE VF                                 +M  R+++SWTA
Sbjct: 322 MYSKCRSIRLAEAVFR--------------------------------RMTCRNIISWTA 349

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           MI GY Q     +A+  F +M+  GI PD+ T+ +V+ +C  L +L+ G + H   + + 
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
           +  R I ++ A++ +Y KCGSI+ A  +F ++  + +    + ++++G AQ G  + +I 
Sbjct: 410 LM-RYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS--WTALVTGYAQFGKAKETID 466

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLL 494
           +F +M   GLKPDGVTF+ VL ACS  GLVE+G  +F+SM  ++GI P  +HY CM+DL 
Sbjct: 467 LFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLY 526

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
           +R GR  EA   I+ MP+  ++  W  LL++CRL  N +IG+ A + LL+ +P + A YV
Sbjct: 527 SRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYV 586

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LL +M A   +W E   +R+ M D  ++K PG S+I++   +H F A  +SHP +  I  
Sbjct: 587 LLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYE 646

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
            L+ +  K+   GY P+   V+ DV + +K  ++S+HSEKLA+AFGLI    +  IRI K
Sbjct: 647 KLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVK 706

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+C DCH A K +S+I  R+I+VRDA+RFH F  G CSC DFW
Sbjct: 707 NLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 37/277 (13%)

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           R+    H ++ K         LL   ++  YAK G +  A RVF  M    +    ++++
Sbjct: 29  RVAGAVHCLILKTFLQAPPTFLLNH-LLTAYAKSGRLARARRVFDEMP-DPNLFTRNALL 86

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF-GKMESLGIHPDE 345
           S       +    +LF  M +RD VS+ A+I+G+S  G  +++++L+   +    + P  
Sbjct: 87  SALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTR 146

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           +T+ A++     L     G  +H Q +  + FG   F+ + ++DMYAK G I  A  VF 
Sbjct: 147 ITLSAMIMVASALSDRALGHSVHCQVLR-LGFGAYAFVGSPLVDMYAKMGLIRDARRVFQ 205

Query: 406 KIPKNLKTVSLFNSII-------------------------------SGLAQHGLGETSI 434
           ++    KTV ++N++I                               +GL Q+GL   ++
Sbjct: 206 EM--EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            VFR M   G+  D  TF ++L AC     +EEGKQ 
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQI 300



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 41/225 (18%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +L +++ SC    SL++  Q H   + SGL  +I+ S+ L++ +   G      R   LF
Sbjct: 381 TLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR---LF 437

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   +   W  L+ GY++    +E + L+  ML+ G+  P+  TF  VL++C+R    
Sbjct: 438 DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGL-KPDGVTFIGVLSACSRAGLV 496

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + GC                             Y ++  K   G +  D   Y  +I+ Y
Sbjct: 497 EKGCD----------------------------YFDSMQKD-HGIVPID-DHYTCMIDLY 526

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
           ++      A    ++M  S   PDAF +  + S+C    +  IGK
Sbjct: 527 SRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGK 568


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/726 (32%), Positives = 389/726 (53%), Gaps = 53/726 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           + LL       SL+  +Q+HG I   G     +  + LI  +   G    L  +  +F  
Sbjct: 8   AGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCG---ELDLACEVFGG 64

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + N+  W  LM G+ R       L L   M +    +PN +T    L +C  +    +
Sbjct: 65  MRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAA 124

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS-LARDLVSYNTLINGYA 186
           G  IH   ++ G +    + ++L+  YS  G I +A +VF+G+ L   + ++N +++GYA
Sbjct: 125 GVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYA 184

Query: 187 QVKEPCPALWLFRKMQ--DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
                  AL +FR+M+  +   QPD FTF ++  AC+ L   R G Q HA +  +     
Sbjct: 185 HAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTA 244

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           SN +L  A+++MY KC                                 ++  A Q+F++
Sbjct: 245 SNAILAGALVDMYVKCR--------------------------------RLPVAMQVFER 272

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           +++++++ WTA++ G++Q G  ++ALELF +    G  PD   + +V+        ++ G
Sbjct: 273 LERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQG 332

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           +++H   I++   G ++    +++DMY KCG  D A  +F ++      V  + ++++GL
Sbjct: 333 RQVHCYGIKDPT-GTDVSAGNSIVDMYLKCGLPDEAERMFREM--RAPNVVSWTTMVNGL 389

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQ 483
            +HGLG  ++A+F EM   G++PD VT++ +L ACSH GLV+E +++F  +  +  ++P+
Sbjct: 390 GKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPK 449

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            EHY CMVDLL R G L EA  LI++MP +    +W+ LL+ACR+H++  +G  AG  LL
Sbjct: 450 AEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLL 509

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS- 602
            ++ D+  +YV LSN+LAE   W E  +VR  M   G++K  G S++E    +H F    
Sbjct: 510 AMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGG 569

Query: 603 --KKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQ-VVFDVDEEEKETVVSYHSEKLALA 658
             +++HPQ  +I  +L+DM  +++   GY  +  +  + DVDEE +   +  HSE+LA+ 
Sbjct: 570 GEEETHPQAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAVG 629

Query: 659 F-----GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
                 G+      E IR+ KNLR+CGDCH  FK LS + RR ++VRDA RFH F+ G+C
Sbjct: 630 LWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSC 689

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 690 SCKDYW 695


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/668 (33%), Positives = 365/668 (54%), Gaps = 40/668 (5%)

Query: 54  CKNGLFRS-RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           CK+GL  + R +F ++ + +   +N +M G S+     +AL L+ +M   GI +  +FTF
Sbjct: 181 CKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA-THFTF 239

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             +L   A ++    G Q+H  +++     ++F+ N+L+ FYS    +++  ++F+    
Sbjct: 240 SSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD VSYN +I  YA  +     L LFR+MQ          +  M S    L D  IGKQ 
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA +   L  + S  LL  A+I+MY+KCG+++                            
Sbjct: 360 HAQLV--LLGLASEDLLGNALIDMYSKCGMLDA--------------------------- 390

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                A+  F    ++  +SWTA+I+GY Q G   +AL+LF  M   G+ PD  T  +++
Sbjct: 391 -----AKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +A   L  +  G++LH  Y+    +  ++F  + ++DMYAKCG +D AL  F ++P+   
Sbjct: 446 KASSSLAMIGLGRQLHS-YLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-N 503

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           ++S +N++IS  A +G  + +I +F  M   G  PD VTF++VL ACSH GL +E  ++F
Sbjct: 504 SIS-WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYF 562

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             M + Y I P  EHY C++D L R G   +   ++  MP+ A+ +IW ++L +CR+H N
Sbjct: 563 HLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGN 622

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++  +A  KL  +EP     YV+LSN+ A   +WE+A  V+K+M D G++K  G+S++E
Sbjct: 623 QELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE 682

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
               ++ F ++  + P   EI+  L  +  ++   GY P+    +  VD E K   + YH
Sbjct: 683 IKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYH 742

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+AF L+N+ +   IRI KNL  C DCH   K++S+I  R+I+VRD+ RFH FK G
Sbjct: 743 SERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDG 802

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 803 VCSCGDYW 810



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/534 (27%), Positives = 252/534 (47%), Gaps = 60/534 (11%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           RL L   SLL    S   L +A  +  Q+ H  +    S + ++S ++ SG    L  ++
Sbjct: 45  RLNLGLRSLL----SSGHLHRARAMFDQMPHKNI---FSLNLILSAYSSSG---DLPAAQ 94

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            LF    + N   W  +MR ++ +    +AL L+ +ML +G++ P+  T   VLN     
Sbjct: 95  HLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTVLN----- 148

Query: 123 SSFKSGCQI---HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
                GC +   H   IKFGL+  +F+ N L+  Y   G +  A +VF     +D V+YN
Sbjct: 149 ---LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYN 205

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            ++ G ++      AL LF  M+ + I    FTF ++ +    +    +G Q HA+V ++
Sbjct: 206 AMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRS 265

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +  N+ +  ++++ Y+KC  +                                +  R
Sbjct: 266 TSVL--NVFVNNSLLDFYSKCDCL--------------------------------DDMR 291

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           +LFD+M +RD VS+  +I+ Y+     +  L LF +M+ LG     +    +L     L 
Sbjct: 292 RLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLP 351

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            +  GK++H Q +  +       L  A+IDMY+KCG +D A S F    ++ K+   + +
Sbjct: 352 DVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSN--RSEKSAISWTA 408

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +I+G  Q+G  E ++ +F +M   GL+PD  TF +++ A S   ++  G+Q    ++  G
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            K  +     +VD+ A+ G LDEA      MP + NS+ W A+++A   +  AK
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYAHYGEAK 521



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 161/345 (46%), Gaps = 13/345 (3%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           R VL ++++L++  S   +    QIH Q+V  GL +  +  + LI  ++  G  +    +
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA---A 391

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           +  FS     +   W  L+ GY ++   +EAL L++ M   G+  P+  TF  ++ + + 
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL-RPDRATFSSIIKASSS 450

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L+    G Q+H ++I+ G +  +F  + L+  Y+  G ++ A + F+    R+ +S+N +
Sbjct: 451 LAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 510

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--LNDPRIGKQFHAVVYKN 239
           I+ YA   E   A+ +F  M      PD+ TF+++ +AC+   L D  + K FH  + K+
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECM-KYFH--LMKH 567

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +         VI+   + G  +  +++   M        W+S++      G  E AR
Sbjct: 568 QYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELAR 627

Query: 300 QLFDQ---MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
              D+   M+  D   +  + + Y++ G +  A  +   M   G+
Sbjct: 628 VAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/668 (33%), Positives = 365/668 (54%), Gaps = 40/668 (5%)

Query: 54  CKNGLFRS-RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           CK+GL  + R +F ++ + +   +N +M G S+     +AL L+ +M   GI +  +FTF
Sbjct: 181 CKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA-THFTF 239

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             +L   A ++    G Q+H  +++     ++F+ N+L+ FYS    +++  ++F+    
Sbjct: 240 SSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD VSYN +I  YA  +     L LFR+MQ          +  M S    L D  IGKQ 
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA +   L  + S  LL  A+I+MY+KCG++                             
Sbjct: 360 HAQLV--LLGLASEDLLGNALIDMYSKCGML----------------------------- 388

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
              + A+  F    ++  +SWTA+I+GY Q G   +AL+LF  M   G+ PD  T  +++
Sbjct: 389 ---DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +A   L  +  G++LH  Y+    +  ++F  + ++DMYAKCG +D AL  F ++P+   
Sbjct: 446 KASSSLAMIGLGRQLHS-YLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-N 503

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           ++S +N++IS  A +G  + +I +F  M   G  PD VTF++VL ACSH GL +E  ++F
Sbjct: 504 SIS-WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYF 562

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             M + Y I P  EHY C++D L R G   +   ++  MP+ A+ +IW ++L +CR+H N
Sbjct: 563 HLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGN 622

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++  +A  KL  +EP     YV+LSN+ A   +WE+A  V+K+M D G++K  G+S++E
Sbjct: 623 QELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE 682

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
               ++ F ++  + P   EI+  L  +  ++   GY P+    +  VD E K   + YH
Sbjct: 683 IKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYH 742

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+AF L+N+ +   IRI KNL  C DCH   K++S+I  R+I+VRD+ RFH FK G
Sbjct: 743 SERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDG 802

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 803 VCSCGDYW 810



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 247/522 (47%), Gaps = 56/522 (10%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           L S   L +A  +  Q+ H  +    S + ++S ++ SG    L  ++ LF    + N  
Sbjct: 53  LLSSGHLHRARAMFDQMPHKNI---FSLNLILSAYSSSG---DLPAAQHLFLSSPHRNAT 106

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI--- 131
            W  +MR ++ +    +AL L+ +ML +G++ P+  T   VLN          GC +   
Sbjct: 107 TWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTVLN--------LPGCTVPSL 157

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H   IKFGL+  +F+ N L+  Y   G +  A +VF     +D V+YN ++ G ++    
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL LF  M+ + I    FTF ++ +    +    +G Q HA+V ++   +  N+ +  
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL--NVFVNN 275

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           ++++ Y+KC  +                                +  R+LFD+M +RD V
Sbjct: 276 SLLDFYSKCDCL--------------------------------DDMRRLFDEMPERDNV 303

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           S+  +I+ Y+     +  L LF +M+ LG     +    +L     L  +  GK++H Q 
Sbjct: 304 SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQL 363

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +  +       L  A+IDMY+KCG +D A S F    ++ K+   + ++I+G  Q+G  E
Sbjct: 364 VL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSN--RSEKSAISWTALITGYVQNGQHE 420

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ +F +M   GL+PD  TF +++ A S   ++  G+Q    ++  G K  +     +V
Sbjct: 421 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLV 480

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           D+ A+ G LDEA      MP + NS+ W A+++A   +  AK
Sbjct: 481 DMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYAHYGEAK 521



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 161/345 (46%), Gaps = 13/345 (3%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           R VL ++++L++  S   +    QIH Q+V  GL +  +  + LI  ++  G  +    +
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA---A 391

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           +  FS     +   W  L+ GY ++   +EAL L++ M   G+  P+  TF  ++ + + 
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL-RPDRATFSSIIKASSS 450

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L+    G Q+H ++I+ G +  +F  + L+  Y+  G ++ A + F+    R+ +S+N +
Sbjct: 451 LAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 510

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--LNDPRIGKQFHAVVYKN 239
           I+ YA   E   A+ +F  M      PD+ TF+++ +AC+   L D  + K FH  + K+
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECM-KYFH--LMKH 567

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +         VI+   + G  +  +++   M        W+S++      G  E AR
Sbjct: 568 QYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELAR 627

Query: 300 QLFDQ---MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
              D+   M+  D   +  + + Y++ G +  A  +   M   G+
Sbjct: 628 VAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/594 (38%), Positives = 349/594 (58%), Gaps = 41/594 (6%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           Q+H H++K G+ FD F  + L+   ++  +G ++ A  +F          YNT+I G   
Sbjct: 16  QVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVN 75

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             +   AL L+  M +  ++PD FT+  +  AC+ L     G Q H  V+K +G  G ++
Sbjct: 76  DMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFK-MGLEG-DV 133

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           +++ ++INMY KC                                G+I+ A  +F+ MD+
Sbjct: 134 IVQNSLINMYGKC--------------------------------GEIKNACDVFNGMDE 161

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKR 366
           + + SW+A+I  ++ V  +++ L L GKM S G    +E T+V VL AC  LG+ D GK 
Sbjct: 162 KSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKC 221

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   + N+    N+ + T++IDMY K G ++  L VF  + +  K    +  +ISGLA 
Sbjct: 222 IHGILLRNIS-ELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSE--KNRYSYTVMISGLAI 278

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQME 485
           HG G+ ++ VF EM   GL PD V +V V  ACSH GLVEEG Q F+SM   + I+P ++
Sbjct: 279 HGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQ 338

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HYGCMVDLL R G L EAY LI+SM    N VIWR+LL+AC++H N +IG+IA + L  L
Sbjct: 339 HYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFML 398

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
             ++   Y++L+NM A+  +W++  ++R  + +  + + PG+S IE    +++F++  KS
Sbjct: 399 NQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKS 458

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            PQ   I  M+  M  +LK  GY+P+T QV+ DVD+EEK+  + +HS+KLA+AFGLI++ 
Sbjct: 459 IPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTS 518

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               +RIT+NLR+C DCH   K +S IY REI VRD +RFH FK G+CSC D+W
Sbjct: 519 EGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 209/443 (47%), Gaps = 63/443 (14%)

Query: 26  QIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q+H  ++  G+       S L++  AL+   +  +   I F+QID P+ F +NT++RG  
Sbjct: 16  QVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSI-FTQIDEPSSFDYNTMIRGNV 74

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
                +EAL+LY  M+ +G V P+ FT+PFVL +C+ L     G Q+H H+ K GLE D+
Sbjct: 75  NDMKLEEALLLYVDMIERG-VEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDV 133

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QD 203
            ++N+LI+ Y   G I NA  VF G   + + S++ +I  +A V+     L L  KM  +
Sbjct: 134 IVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSE 193

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
              + +  T V + SACT L  P +GK  H ++ +N+  +  N+++KT++I+MY K G +
Sbjct: 194 GRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISEL--NVVVKTSLIDMYVKSGCL 251

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DLVSWTAMISG 319
               RVF  M   K+  +++ MISG    G+ + A ++F +M +     D V +  + S 
Sbjct: 252 EKGLRVFKNMS-EKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 320 YSQVGGFSQALELFGKME---------------------------------SLGIHPDEV 346
            S  G   + L+ F  M+                                 S+ I P++V
Sbjct: 311 CSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDV 370

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT--------AVIDMYAKCGSID 398
              ++L AC     L+ GK          +   N+F+           + +MYAK    D
Sbjct: 371 IWRSLLSACKVHHNLEIGK----------IAAENLFMLNQNNSGDYLVLANMYAKAQKWD 420

Query: 399 TALSVFYKIP-KNLKTVSLFNSI 420
               +  K+  +NL     F+ I
Sbjct: 421 DVAKIRTKLAERNLVQTPGFSLI 443


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/688 (36%), Positives = 375/688 (54%), Gaps = 60/688 (8%)

Query: 39  HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTS 98
           H+SS   +SF +L+   N       L + I++ N    N L++   +  + ++AL L   
Sbjct: 24  HVSSRVPVSFVSLNPSAN-------LINDINSNN----NQLIQSLCKGGNLKQALHLLCC 72

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
                  +P   TF  ++ SCA+ +S   G  +H  ++  G + D F+   LI+ Y   G
Sbjct: 73  E-----PNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELG 127

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            I+ A KVF+ +  R +  +N L    A V      L L+ +M       D FT+  +  
Sbjct: 128 SIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLK 187

Query: 219 AC--TELN--DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           AC  +EL+    R GK+ HA + ++                                  G
Sbjct: 188 ACVVSELSVCPLRKGKEIHAHILRH----------------------------------G 213

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
              +    ++++  Y + G +  A  +F  M  ++ VSW+AMI+ +++     +ALELF 
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQ 273

Query: 335 KM--ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
            M  E+    P+ VTMV +L+AC GL AL+ GK +H  YI        + +  A+I MY 
Sbjct: 274 LMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHG-YILRRQLDSILPVLNALITMYG 332

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           +CG +     VF  + K  + V  +NS+IS    HG G+ +I +F  M   G+ P  ++F
Sbjct: 333 RCGEVLMGQRVFDNMKK--RDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISF 390

Query: 453 VTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           +TVL ACSH GLVEEGK  FESML+ Y I P MEHY CMVDLL R  RL EA  LI+ M 
Sbjct: 391 ITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMH 450

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
           ++    +W +LL +CR+H N ++ E A   L +LEP +  +YVLL+++ AE   W EA+ 
Sbjct: 451 FEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKS 510

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           V KL++  G+QK PG S+IE    ++ F++  + +PQ +EI  +L  ++ ++K+ GYVP 
Sbjct: 511 VMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQ 570

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V++D+DEEEKE +V  HSEKLA+AFGLIN+   ETIRI KNLR+C DCH   K +S+
Sbjct: 571 TNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISK 630

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              REI+VRD  RFH F+ G CSC D+W
Sbjct: 631 FANREILVRDVNRFHHFRDGVCSCGDYW 658


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/765 (32%), Positives = 397/765 (51%), Gaps = 112/765 (14%)

Query: 18  CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI-- 75
           C  LK  LQ     +   LNH      L++ +A SG    L R+R +F ++ +PN+F   
Sbjct: 36  CLILKTFLQAPPTFL---LNH------LLTAYAKSG---RLARARRVFDEMPDPNLFTRN 83

Query: 76  -----------------------------WNTLMRGYSRSDSPQEALVLYTSMLSKGIVS 106
                                        +N L+ G+S + SP  ++ LY ++L +  V 
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P   T   ++   + LS    G  +HC +++ G     F+ + L+  Y+  G I +A +V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 167 FEGSLARDLVSYNTLINGYAQVKE-------------------------------PCPAL 195
           F+   A+ +V YNTLI G  + K                                   AL
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +FR+M+   +  D +TF ++ +AC  L     GKQ HA + +       N+ + +A+++
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTW--YEDNVFVGSALVD 321

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MY+KC  + +AE VF                                 +M  R+++SWTA
Sbjct: 322 MYSKCRSIRLAEAVFR--------------------------------RMTCRNIISWTA 349

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           MI GY Q     +A+  F +M+  GI PD+ T+ +V+ +C  L +L+ G + H   + + 
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
           +  R I ++ A++ +Y KCGSI+ A  +F ++  + +    + ++++G AQ G  + +I 
Sbjct: 410 LM-RYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS--WTALVTGYAQFGKAKETID 466

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLL 494
           +F +M + GLKPDGVTF+ VL ACS  GLVE+G  +F+SM  ++ I P  +HY CM+DL 
Sbjct: 467 LFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLY 526

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
           +R GR  EA   I+ MP+  ++  W  LL++CRL  N +IG+ A + LL+ +P + A YV
Sbjct: 527 SRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYV 586

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LL +M A   +W E   +R+ M D  ++K PG S+I++   +H F A  +SHP +  I  
Sbjct: 587 LLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYE 646

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
            L+ +  K+   GY P+   V+ DV + +K  ++S+HSEKLA+AFGLI    +  IRI K
Sbjct: 647 KLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVK 706

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+C DCH A K +S+I  R+I+VRDA+RFH F  G CSC DFW
Sbjct: 707 NLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 37/277 (13%)

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           R+    H ++ K         LL   ++  YAK G +  A RVF  M    +    ++++
Sbjct: 29  RVAGAVHCLILKTFLQAPPTFLLNH-LLTAYAKSGRLARARRVFDEMP-DPNLFTRNALL 86

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF-GKMESLGIHPDE 345
           S       +    +LF  M +RD VS+ A+I+G+S  G  +++++L+   +    + P  
Sbjct: 87  SALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTR 146

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           +T+ A++     L     G  +H Q +  + FG   F+ + ++DMYAK G I  A  VF 
Sbjct: 147 ITLSAMIMVASALSDRALGHSVHCQVLR-LGFGAYAFVGSPLVDMYAKMGLIRDARRVFQ 205

Query: 406 KIPKNLKTVSLFNSII-------------------------------SGLAQHGLGETSI 434
           ++    KTV ++N++I                               +GL Q+GL   ++
Sbjct: 206 EM--EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            VFR M   G+  D  TF ++L AC      EEGKQ 
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQI 300



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)

Query: 10  SLLALLESCK---SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +L +++ SC    SL++  Q H   + SGL  +I+ S+ L++ +   G      R   LF
Sbjct: 381 TLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR---LF 437

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   +   W  L+ GY++    +E + L+  ML  G+  P+  TF  VL++C+R    
Sbjct: 438 DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGL-KPDGVTFIGVLSACSRAGLV 496

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + GC                             Y ++  K  +     D   Y  +I+ Y
Sbjct: 497 EKGCD----------------------------YFDSMQKDHDIVPIDD--HYTCMIDLY 526

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
           ++      A    ++M  S   PDAF +  + S+C    +  IGK
Sbjct: 527 SRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGK 568


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/621 (37%), Positives = 351/621 (56%), Gaps = 44/621 (7%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           SP+  T+  ++  C   SS     ++H HI+  G + D F+   LI  YS  G ++ A K
Sbjct: 74  SPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK 133

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT---- 221
           VF+ +  R +  +N L             L L+ KM    ++ D FT+  +  AC     
Sbjct: 134 VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
            +N    GK+ HA + +      S++ + T +++MYA                       
Sbjct: 194 TVNHLMKGKEIHAHLTRR--GYSSHVYIMTTLVDMYA----------------------- 228

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM--ESL 339
                    R G ++ A  +F  M  R++VSW+AMI+ Y++ G   +AL  F +M  E+ 
Sbjct: 229 ---------RFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETK 279

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
              P+ VTMV+VL+AC  L AL+ GK +H  YI        + + +A++ MY +CG ++ 
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGKLIHG-YILRRGLDSILPVISALVTMYGRCGKLEV 338

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
              VF ++  + + V  +NS+IS    HG G+ +I +F EM   G  P  VTFV+VL AC
Sbjct: 339 GQRVFDRM--HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 460 SHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLVEEGK+ FE+M  ++GIKPQ+EHY CMVDLL R  RLDEA  ++Q M  +    +
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W +LL +CR+H N ++ E A ++L  LEP +  +YVLL+++ AE   W+E ++V+KL++ 
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 516

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G+QK PG  ++E    ++ F++  + +P  ++I   L  +   +K  GY+P T  V+++
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           ++ EEKE +V  HSEKLALAFGLIN+   E IRITKNLR+C DCHL  K +S+   +EI+
Sbjct: 577 LETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           VRD  RFH FK G CSC D+W
Sbjct: 637 VRDVNRFHRFKNGVCSCGDYW 657



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 137/288 (47%), Gaps = 10/288 (3%)

Query: 21  LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           L +  +IH  +   G + H+   + L+  +A  GC +    +  +F  +   N+  W+ +
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVD---YASYVFGGMPVRNVVSWSAM 254

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           +  Y+++    EAL  +  M+ +    SPN+ T   VL +CA L++ + G  IH +I++ 
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR 314

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL+  L + +AL+  Y   G +    +VF+    RD+VS+N+LI+ Y        A+ +F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIF 374

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M  +   P   TFV++  AC+       GK+    ++++ G +   +     ++++  
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHG-IKPQIEHYACMVDLLG 433

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA----RQLF 302
           +   ++ A ++   M        W S++      G +E A    R+LF
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 12/218 (5%)

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           +S   +I    + G   QA+ +  +  S    P + T   ++  C    +L    R+H+ 
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQESS----PSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            ++N    ++ FL T +I MY+  GS+D A  VF K  K  +T+ ++N++   L   G G
Sbjct: 103 ILDNGS-DQDPFLATKLIGMYSDLGSVDYARKVFDKTRK--RTIYVWNALFRALTLAGHG 159

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHG----GLVEEGKQFFESMLNYGIKPQMEH 486
           E  + ++ +M  +G++ D  T+  VL AC         + +GK+    +   G    +  
Sbjct: 160 EEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYI 219

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
              +VD+ AR G +D A  +   MP   N V W A++A
Sbjct: 220 MTTLVDMYARFGCVDYASYVFGGMPV-RNVVSWSAMIA 256



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 92/192 (47%), Gaps = 26/192 (13%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILF 65
           +++++L++C SL   +Q   IHG I+  GL+  +   S L++ +   G    L   + +F
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCG---KLEVGQRVF 343

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++ + ++  WN+L+  Y      ++A+ ++  ML+ G  SP   TF  VL +C+     
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANG-ASPTPVTFVSVLGACSHEGLV 402

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS-LARDLVSYNTLING 184
           + G ++   + +     D  I+  + H+  +   +  A+++ E + + +D+ +       
Sbjct: 403 EEGKRLFETMWR-----DHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRT------- 450

Query: 185 YAQVKEPCPALW 196
                EP P +W
Sbjct: 451 -----EPGPKVW 457


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/717 (34%), Positives = 394/717 (54%), Gaps = 49/717 (6%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHS-GLNHH-ISSSQLISFFALSGCKNGLFRSRILF 65
           ++++L    S ++L++   IH +I  + GL    I  + L++ +A  G    L  ++ LF
Sbjct: 124 YTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCG---SLEDAKRLF 180

Query: 66  SQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
            ++    ++  WN ++  Y++S   +EA+ LY  M     V P+  TF  VL++C+ L  
Sbjct: 181 ERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM----DVEPSVRTFTSVLSACSNLGL 236

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G +IH  I   G E DL ++NAL+  Y+    +++A K+F+    RD+VS++ +I  
Sbjct: 237 LDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAA 296

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +A+      A+  + KMQ   ++P+ +TF ++  AC  + D R G+  H  +  N     
Sbjct: 297 FAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGN----- 351

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
                                        G   +    ++++  YT  G ++ AR LFDQ
Sbjct: 352 -----------------------------GYKITLVNGTALVDLYTSYGSLDEARSLFDQ 382

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLRACVGLGALDF 363
           ++ RD   WT +I GYS+ G  +  LEL+ +M++    P  ++    V+ AC  LGA   
Sbjct: 383 IENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFAD 442

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
            ++ H   IE      +  L T++++MY++ G++++A  VF K+    +    + ++I+G
Sbjct: 443 ARQAHSD-IEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSS--RDTLAWTTLIAG 499

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKP 482
            A+HG    ++ +++EMEL G +P  +TF+ VL ACSH GL E+GKQ F S+  +Y + P
Sbjct: 500 YAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHP 559

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
            + HY C++DLL+R GRL +A  LI +MP + N V W +LL A R+H++ K    A  ++
Sbjct: 560 NIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQI 619

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
             L+P   A YVLLSN+ A T        VR  M   G++K  G S+IE    +H F   
Sbjct: 620 TKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVG 679

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
             SHP+ +EI   L+ ++ K+K AGYVP + +V+ DV E+EKE ++  HSEKLA+AFGLI
Sbjct: 680 DNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLI 739

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +    T+RI   LRIC DCH A K +S I RREI+VRD+ RFH F+ G CSC D+W
Sbjct: 740 ATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 242/520 (46%), Gaps = 55/520 (10%)

Query: 15  LESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           L  C+ L+   QIH +I  +   +    ++++  +   G    +  +R+ F  I   N +
Sbjct: 34  LRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCG---SVASARVAFDAIARKNDY 90

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            W +++  Y+++   + AL LY  M     + PN   +  VL +CA + + + G  IH  
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIEALEEGKAIHSR 146

Query: 135 IIKF-GLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLINGYAQVKEPC 192
           I    GL+ D+ + N+L+  Y+  G + +A ++FE  S  R + S+N +I  YAQ     
Sbjct: 147 ISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFE 206

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            A+ L+  M    ++P   TF ++ SAC+ L     G++ HA++         ++ L+ A
Sbjct: 207 EAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR--GTELDLSLQNA 261

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           ++ MYA+C  ++ A ++F  +   +   +WS+MI+ +                 + DL  
Sbjct: 262 LLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAAFA----------------ETDL-- 302

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
                        F +A+E + KM+  G+ P+  T  +VL AC  +G L  G+ +H Q +
Sbjct: 303 -------------FDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 349

Query: 373 ENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
            N   G  I L   TA++D+Y   GS+D A S+F +I    +   L+  +I G ++ G  
Sbjct: 350 GN---GYKITLVNGTALVDLYTSYGSLDEARSLFDQIEN--RDEGLWTVLIGGYSKQGHR 404

Query: 431 ETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489
              + ++REM+     P   + +  V+ AC+  G   + +Q    +   G+         
Sbjct: 405 TGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATS 464

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +V++ +R G L+ A  +   M    +++ W  L+A    H
Sbjct: 465 LVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGYAKH 503


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/638 (35%), Positives = 368/638 (57%), Gaps = 46/638 (7%)

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y R D P+ A+    S+ S G+ + ++ T+  ++  C    +   G  I  H+   G   
Sbjct: 38  YQR-DLPR-AMKAMDSLQSHGLWA-DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRP 94

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
            +F+ N LI+ Y  F  +N+AH++F+    R+++S+ T+I+ Y++ K    AL L   M 
Sbjct: 95  MMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLML 154

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              ++P+ +T+ ++  +C  ++D R+    H  + K    + S++ +++A+I+++AK G 
Sbjct: 155 RDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKE--GLESDVFVRSALIDVFAKLG- 208

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                                          + E A  +FD+M   D + W ++I G++Q
Sbjct: 209 -------------------------------EPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                 ALELF +M+  G   ++ T+ +VLRAC GL  L+ G + H   +  V + +++ 
Sbjct: 238 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH---VHIVKYDQDLI 294

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L  A++DMY KCGS++ AL VF ++ +  + V  ++++ISGLAQ+G  + ++ +F  M+ 
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKE--RDVITWSTMISGLAQNGYSQEALKLFERMKS 352

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G KP+ +T V VL ACSH GL+E+G  +F SM   YGI P  EHYGCM+DLL + G+LD
Sbjct: 353 SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLD 412

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           +A  L+  M  + ++V WR LL ACR+ RN  + E A +K++ L+P+    Y LLSN+ A
Sbjct: 413 DAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            + +W+   ++R  M D GI+K PG S+IE N  +H F+    SHPQ  E+   L  +  
Sbjct: 473 NSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIH 532

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           +L   GYVP T  V+ D++ E+ E  + +HSEKLALAFGL+    ++ IRI KNLRICGD
Sbjct: 533 RLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGD 592

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH+  KL S++  R I++RD IR+H F+ G CSC D+W
Sbjct: 593 CHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 187/400 (46%), Gaps = 84/400 (21%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF Q+   N+  W T++  YS+    Q+AL L   ML    V PN +T+  VL SC  +S
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN-VRPNVYTYSSVLRSCNGMS 176

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +    +HC IIK GLE D+F+R+ALI  ++  G   +A  VF+  +  D + +N++I 
Sbjct: 177 DVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG 233

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ      AL LF++M+ +    +  T  ++  ACT L    +G Q H  + K     
Sbjct: 234 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----Y 289

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +++L  A+++MY KCG +  A RVF+ M   +    WS+MISG  +            
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQ------------ 336

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                         +GYSQ     +AL+LF +M+S G  P+ +T+V VL AC   G L+ 
Sbjct: 337 --------------NGYSQ-----EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377

Query: 364 G----KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           G    + + + Y  + V  R  +    +ID+  K G +D A             V L N 
Sbjct: 378 GWYYFRSMKKLYGIDPV--REHY--GCMIDLLGKAGKLDDA-------------VKLLN- 419

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
                              EME    +PD VT+ T+L AC
Sbjct: 420 -------------------EME---CEPDAVTWRTLLGAC 437


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/616 (37%), Positives = 356/616 (57%), Gaps = 47/616 (7%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D F  NA++  Y+  G + +   +F+   +RD VSYNT+I+G+A      PAL +F +MQ
Sbjct: 88  DNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ 147

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCG 261
              ++P  +T V++ +ACT+L D R GKQ H  ++  NLG    N+ +  A+ ++YA+CG
Sbjct: 148 KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLG---GNVFVCNALTDLYARCG 204

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTRE----------------------------- 292
            ++ A R+F  M + ++   W+ MISGY +                              
Sbjct: 205 EIDQARRLFDRMVI-RNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVL 263

Query: 293 ------GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                 G I+ AR++F ++ ++D V WT MI G +Q G    AL LF +M      PD  
Sbjct: 264 GAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGY 323

Query: 347 TMVAVLRACVGLGALDFGKRLH-QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           T+ +V+ +C  L +L  G+ +H + ++  V    ++ +++A++DMY KCG    A ++F 
Sbjct: 324 TISSVVSSCAKLASLYHGQVVHGKAFLMGV--NDDLLVSSALVDMYCKCGVTRDAWTIFS 381

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
            +    + V  +NS+I G A +G    +++++  M    LKPD VTFV VL AC H GLV
Sbjct: 382 TM--QTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439

Query: 466 EEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           EEGK++F SM + +G++P  +HY CMV+L  R G +D+A  LI SM  + NS+IW  +L+
Sbjct: 440 EEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
            C +  + K GE+A + L++L P +   Y++LSNM A   RW++   +R LM    ++K 
Sbjct: 500 VCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKF 559

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
             +S+IE +  +H+F+A  ++HP  K I + L  +  KL+ AG+ PNT  V+ D  E+EK
Sbjct: 560 SAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEK 619

Query: 645 ETVVSYHSEKLALAFGLINSRSKET-IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
              ++YHSEKLALA+GLI      T IRI KN+R C DCH+  K +S I RR +++RD+ 
Sbjct: 620 LESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSN 679

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH F +G CSC D+W
Sbjct: 680 RFHHFVEGKCSCKDYW 695



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 140/281 (49%), Gaps = 5/281 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F +I   +   W  ++ G +++   ++AL+L++ ML +    P+ +T   V++SCA
Sbjct: 275 ARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLEN-ARPDGYTISSVVSSCA 333

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L+S   G  +H      G+  DL + +AL+  Y   G   +A  +F     R++VS+N+
Sbjct: 334 KLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNS 393

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GYA   +   AL L+  M +  ++PD+ TFV + SAC        GK++   +    
Sbjct: 394 MIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQH 453

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ER 297
           G +         ++N++ + G M+ A  + S+M    ++  W++++S    +G I   E 
Sbjct: 454 G-LEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEM 512

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
           A +   +++  + V +  + + Y+  G +     +   M+S
Sbjct: 513 AARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKS 553



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 6/211 (2%)

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+  H + + + +  R+ F   A++ +YAK G ++    +F  +P    +VS +N++ISG
Sbjct: 72  GEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSR-DSVS-YNTVISG 129

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            A +G G  ++ VF  M+  GLKP   T V+VL AC+    +  GKQ    ++   +   
Sbjct: 130 FAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGN 189

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK--IGEIAGQK 541
           +     + DL AR G +D+A  L   M    N V W  +++    +R  +  I      +
Sbjct: 190 VFVCNALTDLYARCGEIDQARRLFDRMVI-RNVVTWNLMISGYLKNRQPEKCIDLFHEMQ 248

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           + +L+PD      +L   +   Y  +EAR+V
Sbjct: 249 VSNLKPDQVTASSVLGAYIQAGY-IDEARKV 278


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/733 (34%), Positives = 404/733 (55%), Gaps = 55/733 (7%)

Query: 1    MKRLV-LEHSSLLALLESCKSL-------KQALQIHGQIVHSGL-NHHIS-SSQLISFFA 50
            MK LV +   SL+ LL +           ++  ++H  +  SGL +  IS  + L++ + 
Sbjct: 443  MKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMY- 501

Query: 51   LSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
              G    +  +  +F  + + +   WN+++ G   ++  +EA+  + +M   G+V P+NF
Sbjct: 502  --GKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMV-PSNF 558

Query: 111  TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
            +    L+SC+ L     G QIH    K+GL+ D+ + NAL+  Y+    IN   KVF   
Sbjct: 559  SVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQM 618

Query: 171  LARDLVSYNTLINGYAQVKEPC-PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
               D VS+N+ I   A+ +     AL  F +M  +  +P+  TF+ + +A +  +   +G
Sbjct: 619  PEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLG 678

Query: 230  KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
             Q HA++ K    V  +  ++ A++  Y KC  M   E +FS M                
Sbjct: 679  HQIHALILKY--SVADDNAIENALLAFYGKCEQMEDCEIIFSRMS--------------- 721

Query: 290  TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                            ++RD VSW +MISGY   G   +A++L   M   G   D  T  
Sbjct: 722  ----------------ERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFA 765

Query: 350  AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
             VL AC  +  L+ G  +H   +       ++ + +A++DMYAKCG ID A   F  +P 
Sbjct: 766  TVLSACASVATLERGMEVHACAVR-ACLESDVVVGSALVDMYAKCGKIDYASRFFELMP- 823

Query: 410  NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             ++ +  +NS+ISG A+HG G+ ++ +F  M+  G  PD VTFV VL ACSH GLV+EG 
Sbjct: 824  -VRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGY 882

Query: 470  QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC-R 527
            + F+SM   YG+ P++EH+ CMVDLL R G + +    I++MP D N +IWR +L AC R
Sbjct: 883  KHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCR 942

Query: 528  LH-RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
             + RN ++G+ A + L++LEP +  +YVLLSNM A    WE+  + R  M  + ++K  G
Sbjct: 943  ANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAG 1002

Query: 587  WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
             S++     +H F+A  ++HP+ ++I   LK++  K++ AGYVP T   ++D++ E KE 
Sbjct: 1003 CSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEE 1062

Query: 647  VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            ++SYHSEKLA+AF ++  +S+  IRI KNLR+CGDCH AFK +S+I  R+I++RD+ RFH
Sbjct: 1063 LLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFH 1121

Query: 707  LFKKGNCSCMDFW 719
             F  G CSC D+W
Sbjct: 1122 HFGGGMCSCGDYW 1134



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/544 (24%), Positives = 251/544 (46%), Gaps = 60/544 (11%)

Query: 1   MKRLVLEHSSLLAL------LESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSG 53
           ++     HS L  L       ++  SL  A  +H Q+  +G    +   + LI+ +   G
Sbjct: 130 LRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIG 189

Query: 54  CKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
               L  +R LF ++   N+  W+ L+ GY+++  P EA  L+  ++S G++ PN+F   
Sbjct: 190 ---NLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLL-PNHFAVG 245

Query: 114 FVLNSCARLSS--FKSGCQIHCHIIKFGLEFDLFIRNALIHFYS-IFGYINNAHKVFEGS 170
             L +C +  S   K G QIH  I K     D+ + N L+  YS   G I++AH+VF+  
Sbjct: 246 SALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEI 305

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQ----DSCIQPDAFTFVAMFSACTELNDP 226
             R+ V++N++I+ Y +  +   A  LF  MQ    +  ++P+ +T  ++ +A   L D 
Sbjct: 306 KFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADC 365

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +      +          ++ + +A++N +A+ GLM+ A+ +F  M   ++    + ++
Sbjct: 366 GLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQM-YDRNAVTMNGLM 424

Query: 287 SGYTREGKIERARQLFDQMDQRDLV-----SWTAMISGYSQVGGFSQALELFGKMESLGI 341
            G  R+ + E A ++F +M  +DLV     S   ++S +++     +     GK +    
Sbjct: 425 VGLARQHQGEEAAKVFKEM--KDLVEINSESLVVLLSTFTEFSNLKE-----GKRK---- 473

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
                                 G+ +H     + +    I +  A+++MY KC +ID A 
Sbjct: 474 ----------------------GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNAC 511

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
           SVF  +P    TVS +NS+ISGL  +   E +++ F  M+  G+ P   + ++ L +CS 
Sbjct: 512 SVFQLMPSK-DTVS-WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSS 569

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
            G +  G+Q       +G+   +     ++ L A    ++E   +   MP + + V W +
Sbjct: 570 LGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNS 628

Query: 522 LLAA 525
            + A
Sbjct: 629 FIGA 632



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 35/309 (11%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +++I+ Y R G +  AR+LFD+M Q++LVSW+ +ISGY+Q     +A  LF  + S G+ 
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLL 238

Query: 343 PDEVTMVAVLRACVGLGA--LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDT 399
           P+   + + LRAC   G+  +  G ++H  +I  +    ++ L+  ++ MY+ C GSID 
Sbjct: 239 PNHFAVGSALRACQQCGSTGIKLGMQIH-AFICKLPCVSDMILSNVLMSMYSDCSGSIDD 297

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG----LKPDGVT---F 452
           A  VF +I    +    +NSIIS   + G   ++  +F  M++ G    L+P+  T    
Sbjct: 298 AHRVFDEI--KFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSL 355

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL---------LARDGRLDEA 503
           VT  C+ +  GLV       E ML      ++E  G + DL          AR G +D A
Sbjct: 356 VTAACSLADCGLV-----LLEQMLT-----RIEKSGFLRDLYVGSALVNGFARYGLMDCA 405

Query: 504 YGLIQSMPYDANSVIWRALLAA-CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
             + + M YD N+V    L+    R H+  +  ++  +++ DL   +    V+L +   E
Sbjct: 406 KMIFKQM-YDRNAVTMNGLMVGLARQHQGEEAAKVF-KEMKDLVEINSESLVVLLSTFTE 463

Query: 563 TYRWEEARQ 571
               +E ++
Sbjct: 464 FSNLKEGKR 472


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 392/700 (56%), Gaps = 51/700 (7%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRIL 64
           ++H+ L  L  +  SL Q  Q H  I+ +GL N    +++L+S +A + C      + ++
Sbjct: 14  VQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMC---FADATLV 70

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
              +  PN+F ++TL+  +S+      AL  ++ ML++G++ P+N   P  + +CA LS+
Sbjct: 71  LDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM-PDNRVLPSAVKACAGLSA 129

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            K   Q+H      G + D F++++L+H Y     I +AH+VF+     D+VS++ L+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 185 YAQVKEPCPALWLFRKMQDSCIQP-----------------------------------D 209
           YA+      A  LF +M DS +QP                                   D
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
             T  ++  A  +L D  +G   H  V K  G V S+  + +A+I+MY KC   +   +V
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQ-GLV-SDKCVSSALIDMYGKCSCTSEMSQV 307

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERA----RQLFDQMDQRDLVSWTAMISGYSQVGG 325
           F  M       + ++ I G +R G++E +    RQL DQ  + ++VSWT+MI+  SQ G 
Sbjct: 308 FDQMD-HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGR 366

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +ALELF +M+  G+ P+ VT+  +L AC  + AL  GK  H   +   +   ++++ +
Sbjct: 367 DMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGI-STDVYVGS 425

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           A+IDMYAKCG I  +   F  IP   K +  +N++I+G A HG  + ++ +F  M+  G 
Sbjct: 426 ALIDMYAKCGRIQASRICFDGIPT--KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ 483

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAY 504
           KPD ++F  VL ACS  GL EEG  +F SM + YGI+ ++EHY CMV LL+R G+L++AY
Sbjct: 484 KPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
            +I+ MP + ++ +W ALL++CR+H N  +GE+A +KL +LEP +  +Y+LLSN+ A   
Sbjct: 544 AMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKG 603

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
            W E  +VR +M + G++K PG S+IE    +H  LA  KSHPQ  +I   L  ++M++K
Sbjct: 604 MWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMK 663

Query: 625 SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
             GY P    V+ DV+E++KE ++  HSEKLA+ FGL+N+
Sbjct: 664 KLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNT 703


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/613 (38%), Positives = 365/613 (59%), Gaps = 28/613 (4%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY---INNAHKVFEGSL 171
           VL+ C  L   +   QIH  +IK  L    F  + LI F S+ G    ++ A  VF    
Sbjct: 12  VLDKCKSLCELR---QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA---FTFVAMFSACTELNDPRI 228
             +   +  LI G++    P  +L L+ +M  SC+   +   F+  ++  AC +L     
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARML-SCLNYSSGVEFSIPSVLKACGKLLAFDE 127

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G+Q H  V K    +  +  +  +++ MY   G + +A RVF  M  ++   +W+SMI+G
Sbjct: 128 GRQVHGQVLKTH--LWFDPFVGNSMVRMYIDFGEIELARRVFDRMP-NRDVVSWNSMIAG 184

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y + G+IE A +LFD+M +RDLVS  AMI GY +            +M SLG+ PD   +
Sbjct: 185 YLKAGEIELASELFDEMPERDLVSCNAMIDGYGK------------EMLSLGLRPDGPAI 232

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V+VL A   LG ++ GK LH     N +   + F+ +A+IDMY+KCG I+ A  VF  I 
Sbjct: 233 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 292

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              + +  +NS+ISGLA HGL   ++ +F EME M ++P+ +TF+ +L  CSHGGLVEEG
Sbjct: 293 HR-RNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 351

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           + +FESM   Y I P+++HYGCM+DL  R GRL++A G+IQ+MP++A+ + W+A+L+A  
Sbjct: 352 QFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASM 411

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
            H + +IG+ A  + ++L PD  + YVLLSN+ A+  RW++  ++R +M   G++K  G 
Sbjct: 412 KHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 471

Query: 588 SYIEHNGTLHRFLASKK-SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
           S +  NG +H FL  K+     + ++   + ++  +LK  GY P+  QV+ D+++E KE+
Sbjct: 472 SSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKES 531

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
           +++ HSEK+A+AFGLI+      I I KNLR+C DCH   KL+S++Y R+I++RD  RFH
Sbjct: 532 LLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFH 591

Query: 707 LFKKGNCSCMDFW 719
            F+ G CSC ++W
Sbjct: 592 HFENGCCSCNEYW 604



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 235/462 (50%), Gaps = 62/462 (13%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           ++++L+ CKSL +  QIH Q++ + L NH  + S+LI+F +LSG   GL  +  +FS+I 
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +PN FI+  L++G+S + +P E+L+LY  MLS     S   F+ P VL +C +L +F  G
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H  ++K  L FD F+ N+++  Y  FG I  A +VF+    RD+VS+N++I GY + 
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKA 188

Query: 189 KEPCPALWLFRKMQD----SC---------------IQPDAFTFVAMFSACTELNDPRIG 229
            E   A  LF +M +    SC               ++PD    V++ SA  +L     G
Sbjct: 189 GEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEG 248

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           K  HA V  N   + S   + +A+I+MY+KCG +  A  VF ++   ++   W+SMISG 
Sbjct: 249 KWLHAYVSMNKIELSSG-FIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 307

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
              G    AR                            +AL++F +ME + I P+E+T +
Sbjct: 308 AIHG---LAR----------------------------EALDIFVEMERMDIEPNEITFL 336

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
            +L  C   G ++ G+   +   E       I     +ID++ + G ++ AL V   +P 
Sbjct: 337 GLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPF 396

Query: 410 NLKTVSLFNSIISGLAQHG---LGETSIAVFREMELMGLKPD 448
               ++ + +I+S   +HG   +G++  A  R +E   L PD
Sbjct: 397 EADLLA-WKAILSASMKHGHIEIGKS--AALRAIE---LAPD 432


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/729 (32%), Positives = 386/729 (52%), Gaps = 80/729 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F +I + +I +W  L+  Y        A+ L+  +L +GI + +   F  VL++C+   
Sbjct: 84  VFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGI-ALDAIVFVSVLSACSSEE 142

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR--DLVSYNTL 181
              +G  IH   ++ GL     + +AL+  Y   G + +A+ +F G L R  D+V +N +
Sbjct: 143 FLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALF-GHLERHLDVVLWNAM 201

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG--KQFHAVVYKN 239
           I   +Q   P  AL +F +M    I PD  TFV++F AC+     R    K FHA + + 
Sbjct: 202 ITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDET 261

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR-------- 291
              +GS++++ TA++N YA+CG ++ A + F+ M   ++  +W+SMI+ +T+        
Sbjct: 262 --GLGSDVVVATALVNAYARCGEIDCARKFFAEMP-ERNAVSWTSMIAAFTQIGHLLAVE 318

Query: 292 -------EGKIERARQLFDQM----DQR----------------DLVSWTAMISGYSQVG 324
                  EG +     LF  +    D R                D+   T ++  Y++  
Sbjct: 319 TFHAMLLEGVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCD 378

Query: 325 GFSQALELFGKME---------------------------------SLGIHPDEVTMVAV 351
           G   A+ +F   E                                   GI PD +  +  
Sbjct: 379 GQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITA 438

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  L AL  G+++H     +    R++ L  A++ MY +CGS+  A   F  +P   
Sbjct: 439 LDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARD 498

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           +    +N+++S  AQHG  E    +FR M   G   + + F+ +L AC+H GLV+ G + 
Sbjct: 499 EIS--WNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEH 556

Query: 472 FESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F +M  ++G+ P  EHYGCMVDLL R GRL +A+G++Q+MP   ++  W AL+ ACR++ 
Sbjct: 557 FSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYG 616

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           + + G  A +++L+L  DH A YV L N+ +   RW++A  VRK+M D G++K PG S I
Sbjct: 617 DTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSI 676

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E    +H F+   +SHPQ++ I   L+ +   ++ AGY   T +V+ DV+EE+KE ++ +
Sbjct: 677 EIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRF 736

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+AFG++++    T+R+ KNLR+C DCH A K +S+++ REI+VRD  RFH FK 
Sbjct: 737 HSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKD 796

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 797 GACSCGDYW 805



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 5/245 (2%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           SS++  Y R G +E A  +F ++  + +V WT +IS Y   G  + A+ LF ++   GI 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIA 125

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D +  V+VL AC     L  G+ +H+  +E    G    + +A++ MY +CGS+  A +
Sbjct: 126 LDAIVFVSVLSACSSEEFLAAGRLIHRCAVE-AGLGLQEIVASALVSMYGRCGSLRDANA 184

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           +F  + ++L  V L+N++I+  +Q+G    ++ +F  M  +G+ PD VTFV+V  ACS  
Sbjct: 185 LFGHLERHLDVV-LWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSS 243

Query: 463 GLVEEG--KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             +     K F   +   G+   +     +V+  AR G +D A      MP + N+V W 
Sbjct: 244 PSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMP-ERNAVSWT 302

Query: 521 ALLAA 525
           +++AA
Sbjct: 303 SMIAA 307



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 140/318 (44%), Gaps = 37/318 (11%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D ++ ++L++ Y   G + +A  VF     + +V +  LI+ Y        A+ LF ++ 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              I  DA  FV++ SAC+       G+  H    +    +G   ++ +A+++MY +CG 
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVE--AGLGLQEIVASALVSMYGRCGS 178

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A  +F  +        W++MI                               +  SQ
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMI-------------------------------TANSQ 207

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK-RLHQQYIENVVFGRNI 381
            G   +ALE+F +M  LGI PD VT V+V +AC    +L   + +     ++    G ++
Sbjct: 208 NGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDV 267

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            + TA+++ YA+CG ID A   F ++P+  +    + S+I+   Q G    ++  F  M 
Sbjct: 268 VVATALVNAYARCGEIDCARKFFAEMPE--RNAVSWTSMIAAFTQIG-HLLAVETFHAML 324

Query: 442 LMGLKPDGVTFVTVLCAC 459
           L G+ P   T    L  C
Sbjct: 325 LEGVVPTRSTLFAALEGC 342



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 166/384 (43%), Gaps = 29/384 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLF 59
           ++ +V   S+L A LE C+ L+ A  +       G+   ++  + L+  +A    +    
Sbjct: 325 LEGVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAI 384

Query: 60  RSRILFSQIDNP--NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           R   +FS  +    +  +   ++  Y++    +    L+ + + +GI SP+   +   L+
Sbjct: 385 R---VFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGI-SPDRILYITALD 440

Query: 118 SCARLSSFKSGCQIH-CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +CA L++   G QIH C      L+ D+ + NA++  Y   G + +A   F+G  ARD +
Sbjct: 441 ACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEI 500

Query: 177 SYNTLINGYAQ---VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           S+N +++  AQ   V++ C    LFR M       +   F+ + SAC      + G +  
Sbjct: 501 SWNAMLSASAQHGRVEDCCD---LFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHF 557

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           + +  + G V +       ++++  + G +  A  +   M +    A W +++      G
Sbjct: 558 SAMTGDHGVVPATEHYGC-MVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYG 616

Query: 294 KIERAR---QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             ER R   +   ++      ++ A+ + YS  G +  A  +   M  LG          
Sbjct: 617 DTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLG---------- 666

Query: 351 VLRACVGLGALDFGKRLHQQYIEN 374
            LR   G+ +++   ++H+  + +
Sbjct: 667 -LRKIPGVSSIEIRSKVHEFVVRD 689



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           D    V ++R C    ++  GK LH +   +    R+ +L ++++ MY +CGS+++A+ V
Sbjct: 28  DSAAAVRLVREC---NSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDV 84

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F+KI    K++ L+  +IS     G    +IA+F  +   G+  D + FV+VL ACS   
Sbjct: 85  FHKIAH--KSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEE 142

Query: 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            +  G+      +  G+  Q      +V +  R G L +A  L   +    + V+W A++
Sbjct: 143 FLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMI 202

Query: 524 AA 525
            A
Sbjct: 203 TA 204


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 341/592 (57%), Gaps = 42/592 (7%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ-PDAFTFVAMFSACT 221
           A ++F      D+  YNTLI G +    P  AL LF +M+   +  PD+F+F  +  A  
Sbjct: 58  ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117

Query: 222 ELNDPRIGKQFH--AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM------ 273
                  G Q H  AV Y     + S++ + T +I+MYA+C  +  A +VF  M      
Sbjct: 118 NCRALTNGLQLHCLAVGYG----LDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIV 173

Query: 274 -------------GMS-----------KSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
                        G+            ++  +W+ M++GYT+ G+++ AR++F +M  +D
Sbjct: 174 AWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKD 233

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            VSW+ MI G++  G F+ A   F ++   G+ P+EV++  VL AC   GA +FG+ LH 
Sbjct: 234 DVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHG 293

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            ++E   F + I +  A+ID Y+KCG++D A  VF  + +  ++   + ++I+G+A HG 
Sbjct: 294 -FVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLR--RSAVSWTAMIAGMAMHGY 350

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
           GE +I +F EME   +KPD +TF+++L ACSH GLV+ G  +F  M+N YGI+P +EHYG
Sbjct: 351 GEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYG 410

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDL  R G+L +AY  +  MP   N ++WR LL AC +H N  +     ++L +L+P+
Sbjct: 411 CMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPE 470

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           +   +VLLSN+ A   +W++   +R+ M    ++K PGWS IE N  ++ F+A +K +  
Sbjct: 471 NSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDI 530

Query: 609 TKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
             E    L+++  +L+   GYVP    V+ D++ EEKE  VS HSEKLA+AFG+      
Sbjct: 531 AVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRG 590

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IR+ KNLRIC DCH   KL+S++Y  EI+VRD  RFH F  G+CSC D+W
Sbjct: 591 RAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 210/482 (43%), Gaps = 103/482 (21%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           LAL   CKSL+   QI   I  + LN + + S +L+   A++   + L  +R LF  I N
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVT-LPDSLHYARRLFLDIRN 67

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P++F++NTL+RG S SD+P  AL L+  M  K +  P++F+F F+L + A   +  +G Q
Sbjct: 68  PDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQ 127

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYS-----IFGY-------------------------- 159
           +HC  + +GL+  LF+   LI  Y+     +F                            
Sbjct: 128 LHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEG 187

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKE-----------PCP--------------- 193
           + +A +VF     R+L S+N ++ GY +  E           P                 
Sbjct: 188 VKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHN 247

Query: 194 -----ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN--LGCVGSN 246
                A   FR+++   ++P+  +   + SAC +      G+  H  V K+  L  +  N
Sbjct: 248 GNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVN 307

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                A+I+ Y+KCG ++MA  VF  M + +S  +W++MI+G    G  E A +LF++M+
Sbjct: 308 ----NALIDTYSKCGNLDMARLVFDNM-LRRSAVSWTAMIAGMAMHGYGEEAIRLFNEME 362

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           + +                               I PD +T +++L AC   G +D G  
Sbjct: 363 ESN-------------------------------IKPDSITFISILYACSHAGLVDLGCS 391

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
              + +        I     ++D+Y + G +  A     ++P +   + ++ +++   + 
Sbjct: 392 YFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDI-VWRTLLGACSI 450

Query: 427 HG 428
           HG
Sbjct: 451 HG 452


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 356/618 (57%), Gaps = 42/618 (6%)

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSI 156
            ++ +G + P+   +  +L  C RL   + G  +H H++    L+  L ++N +++ Y+ 
Sbjct: 76  DLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAK 135

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +++A ++F+    +D+V++  LI G++Q   P  AL LF +M     QP+ FT  ++
Sbjct: 136 CGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSL 195

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
             A    +    G Q HA   K      S++ + +A+++MYA+C                
Sbjct: 196 LKASGSEHGLDPGTQLHAFCLKY--GYQSSVYVGSALVDMYARC---------------- 237

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
                           G ++ A+  FD M  +  VSW A+ISG+++ G    AL L  KM
Sbjct: 238 ----------------GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKC 394
           +     P   T  +VL AC  +GAL+ GK +H   I++   G  +  F+   ++DMYAK 
Sbjct: 282 QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKS---GLKLIAFIGNTLLDMYAKA 338

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           GSID A  VF ++ K    V  +N++++G AQHGLG+ ++  F +M  +G++P+ ++F+ 
Sbjct: 339 GSIDDAKRVFDRLVK--PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLC 396

Query: 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           VL ACSH GL++EG  +FE M  Y ++P + HY   VDLL R G LD A   I+ MP + 
Sbjct: 397 VLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEP 456

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
            + +W ALL ACR+H+N ++G  A ++  +L+P      +LLSN+ A   RW +  +VRK
Sbjct: 457 TAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRK 516

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           +M +SG++K P  S++E    +H F+A+ ++HP+ KEI    ++++ K+K  GYVP+T  
Sbjct: 517 MMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSH 576

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+  VD++E+E  + YHSEKLALAF L+N+ +   IRI KN+R+CGDCH A K +S++  
Sbjct: 577 VLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVD 636

Query: 695 REIMVRDAIRFHLFKKGN 712
           REI+VRD  RFH F+ G+
Sbjct: 637 REIIVRDTNRFHRFRDGS 654



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 216/451 (47%), Gaps = 58/451 (12%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-------NHHISSSQLISFFALSGCKN 56
           LV +++    LL+ C  L +  Q  G+IVH+ L       NH +  + +++ +A  GC  
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQ--GRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGC-- 138

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
            L  +R +F ++   ++  W  L+ G+S+++ P++AL+L+  ML  G   PN+FT   +L
Sbjct: 139 -LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGF-QPNHFTLSSLL 196

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +         G Q+H   +K+G +  +++ +AL+  Y+  G+++ A   F+G   +  V
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N LI+G+A+  E   AL L  KMQ    QP  FT+ ++ SAC  +     GK  HA +
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHM 316

Query: 237 YKN----LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
            K+    +  +G+ +L      +MYAK G ++ A+RVF  + +     +W++M       
Sbjct: 317 IKSGLKLIAFIGNTLL------DMYAKAGSIDDAKRVFDRL-VKPDVVSWNTM------- 362

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                                   ++G +Q G   + L+ F +M  +GI P+E++ + VL
Sbjct: 363 ------------------------LTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVL 398

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC   G LD G   + + ++      ++      +D+  + G +D A     ++P    
Sbjct: 399 TACSHSGLLDEG-LYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIE-P 456

Query: 413 TVSLFNSIISGLAQHGLGETSI-AVFREMEL 442
           T +++ +++     H   E  + A  R  EL
Sbjct: 457 TAAVWGALLGACRMHKNMELGVYAAERAFEL 487



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 163/336 (48%), Gaps = 37/336 (11%)

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
            L+    +Q   + PD   +  +   CT L     G+  HA +  +   + ++++L+  +
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDS-HFLDNHLVLQNII 129

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           +NMYAKCG ++ A R+F  M  +K    W+++I+G+++  +             RD    
Sbjct: 130 VNMYAKCGCLDDARRMFDEMP-TKDMVTWTALIAGFSQNNR------------PRD---- 172

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                          AL LF +M  LG  P+  T+ ++L+A      LD G +LH  +  
Sbjct: 173 ---------------ALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLH-AFCL 216

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              +  ++++ +A++DMYA+CG +D A   F  +P   K+   +N++ISG A+ G GE +
Sbjct: 217 KYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT--KSEVSWNALISGHARKGEGEHA 274

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           + +  +M+    +P   T+ +VL AC+  G +E+GK     M+  G+K        ++D+
Sbjct: 275 LHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDM 334

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            A+ G +D+A  +   +    + V W  +L  C  H
Sbjct: 335 YAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/703 (33%), Positives = 382/703 (54%), Gaps = 44/703 (6%)

Query: 20   SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
            +LK    IHG +V  GL+ ++   + L++ ++ +G       + ++F  +   ++  WN+
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSE---DAELVFQAMTERDLISWNS 1119

Query: 79   LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
            +M  Y +     + L +   +L  G V  N+ TF   L +C+          +H  II  
Sbjct: 1120 MMACYVQDGKCLDGLKILAELLQMGKVM-NHVTFASALAACSNPECLIESKIVHALIIVA 1178

Query: 139  GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
            G    L + NAL+  Y   G +  A KV +     D V++N LI G+A+ +EP  A+  +
Sbjct: 1179 GFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY 1238

Query: 199  RKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            + +++  I  +  T V++  AC+  +D  + G   HA +   L    S+  +K ++I MY
Sbjct: 1239 KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIV--LTGFESDDYVKNSLITMY 1296

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            AKCG +N                                 +  +FD +  +  ++W AM+
Sbjct: 1297 AKCGDLN--------------------------------SSNYIFDGLGNKSPITWNAMV 1324

Query: 318  SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            +  +  G   +AL++FG+M ++G++ D+ +    L A   L  L+ G++LH   I+ + F
Sbjct: 1325 AANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIK-LGF 1383

Query: 378  GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
              ++ +T A +DMY KCG +   L +  + P N   +S +N +IS  A+HG  + +   F
Sbjct: 1384 ESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLS-WNILISAFARHGCFQKARETF 1441

Query: 438  REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLAR 496
             EM  +G KPD VTFV++L AC+HGGLV+EG  +++SM   +G+ P +EH  C++DLL R
Sbjct: 1442 HEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGR 1501

Query: 497  DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
             GRL  A G I+ MP   N + WR+LLAACR+H N ++     + LL+L+P   + YVL 
Sbjct: 1502 SGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLY 1561

Query: 557  SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
            SN+ A + +WE+   +RK M  + I+K P  S+++    +H F   +K HPQ   I   L
Sbjct: 1562 SNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKL 1621

Query: 617  KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
             ++    K AGYVP+T   + D+DEE+KE  +  HSE+LALAFGLIN+    T+RI KNL
Sbjct: 1622 GELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNL 1681

Query: 677  RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            R+CGDCH  +K +S I  R+I++RD  RFH F  G CSC D+W
Sbjct: 1682 RVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 190/608 (31%), Positives = 320/608 (52%), Gaps = 56/608 (9%)

Query: 6   LEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRS 61
           L+ S  L +L+ C   K+ KQ   IH  ++ +G    +  +++LI F+   G    +  +
Sbjct: 28  LDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVG---DVIAA 84

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R +F  +   ++  W  ++ GYS++   ++A VL++ M   G V  N FT+   L +C  
Sbjct: 85  RNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCG-VKANQFTYGSALRACTS 143

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L     G Q+   I K     +LF+++AL+ F+S  G + +A  +F   + RD+VS+N +
Sbjct: 144 LRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 203

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I GYA       +  +FR M    + PD +T  ++  A  E     I  Q H ++ + LG
Sbjct: 204 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQ-LG 262

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
             GS  ++   +IN YAK                                 G +  A+ L
Sbjct: 263 -YGSYDIVTGLLINAYAK--------------------------------NGSLRSAKDL 289

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
              M ++DL S TA+I+GY+  G +S  AL+LF +M  + I  D+V + ++L  C  L +
Sbjct: 290 RKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLAS 349

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
              G ++H  +        ++ +  A+IDMYAK G I+ A   F ++ +  K V  + S+
Sbjct: 350 FALGTQIHA-FALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEE--KNVISWTSL 406

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           ISG A+HG G  +++++++ME  G KP+ VTF+++L ACSH GL  EG + F +M+N Y 
Sbjct: 407 ISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYN 466

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           IKP+ EHY CMVDL AR G L+EAY L+  +    N+ +W A+L A  ++    +G+ A 
Sbjct: 467 IKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAA 526

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
             L +++P++  +YV+L+++ +    W++A ++RKLM++   +K  G+S+         F
Sbjct: 527 SNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSF---------F 577

Query: 600 LASKKSHP 607
            A+KKS P
Sbjct: 578 QATKKSIP 585



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 219/468 (46%), Gaps = 44/468 (9%)

Query: 61   SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            +R +F ++ + N   W+T++ GY R    +EA+ L+  M   G V PN F    ++ +C+
Sbjct: 798  ARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG-VEPNGFMVASLITACS 856

Query: 121  RLSSF-KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            R       G Q+H  ++K G+  D+++  AL+HFY   G + NA K+FE     ++VS+ 
Sbjct: 857  RSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWT 916

Query: 180  TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF--HAVVY 237
            +L+ GY+    P   L ++++M+   +  +  TF  + S+C  L D  +G Q   H + Y
Sbjct: 917  SLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQY 976

Query: 238  KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
                                                G   S +  +S+IS ++    +E 
Sbjct: 977  ------------------------------------GFEDSVSVANSLISMFSSFSSVEE 1000

Query: 298  ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
            A  +FD M++ D++SW AMIS Y+  G   ++L  F  M  L    +  T+ ++L  C  
Sbjct: 1001 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSS 1060

Query: 358  LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
            +  L +G+ +H   ++ +    N+ +   ++ +Y++ G  + A  VF  + +  + +  +
Sbjct: 1061 VDNLKWGRGIHGLVVK-LGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTE--RDLISW 1117

Query: 418  NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
            NS+++   Q G     + +  E+  MG   + VTF + L ACS+   + E K     ++ 
Sbjct: 1118 NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIV 1177

Query: 478  YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             G    +     +V +  + G + EA  ++Q+MP   + V W AL+  
Sbjct: 1178 AGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 203/462 (43%), Gaps = 47/462 (10%)

Query: 67   QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            Q+ + ++   N   R +   D     + L       GI   N   FP  L   + ++S  
Sbjct: 704  QVKDDDLKTSNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFP--LKGFSEITSQM 761

Query: 127  SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            +G  +H   I   +   +F  N LI+ YS FG I +A  VF+    R+  S++T+++GY 
Sbjct: 762  AGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYV 821

Query: 187  QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCV 243
            +V     A+ LF +M    ++P+ F   ++ +AC+    + D   G Q H  V K  G +
Sbjct: 822  RVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQVHGFVVKT-GIL 878

Query: 244  GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            G ++ + TA+++ Y   GL+  A+++F  M    +  +W+S++ GY+  G       ++ 
Sbjct: 879  G-DVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSWTSLMVGYSDSGNPGEVLNVYQ 936

Query: 304  QMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALD 362
            +M Q                 G S     F  +  S G+  D+V    VL   +  G   
Sbjct: 937  RMRQE----------------GVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYG--- 977

Query: 363  FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
                          F  ++ +  ++I M++   S++ A  VF  +  N   +  +N++IS
Sbjct: 978  --------------FEDSVSVANSLISMFSSFSSVEEACYVFDHM--NECDIISWNAMIS 1021

Query: 423  GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
              A HGL   S+  F  M  +  + +  T  ++L  CS    ++ G+     ++  G+  
Sbjct: 1022 AYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDS 1081

Query: 483  QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
             +     ++ L +  GR ++A  + Q+M  + + + W +++A
Sbjct: 1082 NVCICNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMMA 1122


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/683 (34%), Positives = 384/683 (56%), Gaps = 58/683 (8%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S LI   A +G    L  +R +F  +    + +W  L+  Y + +  +EA+ L+   L  
Sbjct: 192 SALIDMLARNG---DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLED 248

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGY 159
           G   P+ +T   ++++C  L S + G Q+H   ++ GL  D  +   L+  Y+   I   
Sbjct: 249 GF-EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQA 307

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           ++ A+KVFE     D++S+  LI+GY Q  V+E    + LF +M +  I+P+  T+ ++ 
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQEN-KVMALFGEMLNESIKPNHITYSSIL 366

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
            +C  ++D   G+Q HA V K+     S   +  A+++MYA+ G M              
Sbjct: 367 KSCASISDHDSGRQVHAHVIKS--NQASAHTVGNALVSMYAESGCM-------------- 410

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                             E AR++F+Q+ +R      +MI   ++   F     L  ++ 
Sbjct: 411 ------------------EEARRVFNQLYER------SMIPCITEGRDFP----LDHRIV 442

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
            + +     T  +++ A   +G L  G++LH   ++   FG + F++ +++ MY++CG +
Sbjct: 443 RMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLK-AGFGSDRFVSNSLVSMYSRCGYL 501

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A   F ++ K+   +S + S+ISGLA+HG  E ++++F +M L G+KP+ VT++ VL 
Sbjct: 502 EDACRSFNEL-KDRNVIS-WTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLS 559

Query: 458 ACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH GLV EGK++F SM  ++G+ P+MEHY CMVDLLAR G + EA   I  MP  A++
Sbjct: 560 ACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADA 619

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           ++W+ LL ACR H N ++GEI  + +++LEP   A YVLLSN+ A+   W+E  ++R  M
Sbjct: 620 LVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAM 679

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
            D+ + K  G S++E   T H F A   SHP+ ++I   L  +  ++K  GYVP+T  V+
Sbjct: 680 RDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVL 739

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            D+ +E KE  +  HSEK+A+AFGLI + + + IRI KNLR+C DCH A K +S+  RRE
Sbjct: 740 HDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRRE 799

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I++RD+ RFH  K G CSC ++W
Sbjct: 800 IILRDSNRFHRMKDGECSCGEYW 822



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 178/406 (43%), Gaps = 55/406 (13%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+++      S++  LQ+H   +  GL +    S  L+  +A S     +  +  +F +
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFER 317

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQ-EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +   ++  W  L+ GY +S   + + + L+  ML++ I  PN+ T+  +L SCA +S   
Sbjct: 318 MPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESI-KPNHITYSSILKSCASISDHD 376

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           SG Q+H H+IK        + NAL+  Y+  G +  A +VF     R ++          
Sbjct: 377 SGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI---------- 426

Query: 187 QVKEPCPALWLFRKMQDSCIQPD----AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
               PC        +    ++ D    + TF ++ SA   +     G+Q HA+  K    
Sbjct: 427 ----PCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLK--AG 480

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
            GS+  +  ++++MY++CG +  A R F+ +   ++  +W+SMISG  + G  ERA    
Sbjct: 481 FGSDRFVSNSLVSMYSRCGYLEDACRSFNEL-KDRNVISWTSMISGLAKHGYAERA---- 535

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                      L LF  M   G+ P++VT +AVL AC  +G + 
Sbjct: 536 ---------------------------LSLFHDMILTGVKPNDVTYIAVLSACSHVGLVR 568

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            GK   +    +      +     ++D+ A+ G +  AL    ++P
Sbjct: 569 EGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMP 614



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 173/369 (46%), Gaps = 40/369 (10%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLVSYNTLINGYAQVKEPCPALWLF 198
           L+ D  + N+L+  YS  G + +A  VF+G    RD+VS+  + +  A+      +L L 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLI 139

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M +S + P+A+T  A   AC       +       +   +G  G+++ + +A+I+M A
Sbjct: 140 GEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLA 199

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
                                           R G +  AR++FD + ++ +V WT +IS
Sbjct: 200 --------------------------------RNGDLASARKVFDGLIEKTVVVWTLLIS 227

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
            Y Q     +A+ELF      G  PD  TM +++ AC  LG++  G +LH   +  +   
Sbjct: 228 RYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR-MGLA 286

Query: 379 RNIFLTTAVIDMYAKCG---SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI- 434
            +  ++  ++DMYAK     ++D A  VF ++PKN   V  + ++ISG  Q G+ E  + 
Sbjct: 287 SDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKN--DVISWTALISGYVQSGVQENKVM 344

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
           A+F EM    +KP+ +T+ ++L +C+     + G+Q    ++             +V + 
Sbjct: 345 ALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMY 404

Query: 495 ARDGRLDEA 503
           A  G ++EA
Sbjct: 405 AESGCMEEA 413



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 160/337 (47%), Gaps = 24/337 (7%)

Query: 8   HSSLLALLESCKSLKQ---ALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRI 63
           H +  ++L+SC S+       Q+H  ++ S   + H   + L+S +A SGC   +  +R 
Sbjct: 359 HITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGC---MEEARR 415

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F+Q+   ++    T  R     D P +  ++   +   GI S    TF  ++++ A + 
Sbjct: 416 VFNQLYERSMIPCITEGR-----DFPLDHRIVRMDV---GISSS---TFASLISAAASVG 464

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G Q+H   +K G   D F+ N+L+  YS  GY+ +A + F     R+++S+ ++I+
Sbjct: 465 MLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMIS 524

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A+      AL LF  M  + ++P+  T++A+ SAC+ +   R GK++   + ++ G +
Sbjct: 525 GLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLI 584

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RAR 299
              M     ++++ A+ G++  A    + M +      W +++        IE     A+
Sbjct: 585 -PRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAK 643

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
            +  +++ RD   +  + + Y+  G + +   +   M
Sbjct: 644 NVV-ELEPRDPAPYVLLSNLYADAGLWDEVARIRSAM 679



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 26/220 (11%)

Query: 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401
           HP +V+ +    A  G   L  G+ LH++ +   +  R+  +  +++ +Y++CG++ +A 
Sbjct: 47  HPSDVSALLAAAARAG--DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASAR 104

Query: 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461
           +VF  + + L+ +  + ++ S LA++G    S+ +  EM   GL P+  T    LCA +H
Sbjct: 105 NVFDGM-RGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYT----LCAAAH 159

Query: 462 GGLVEE--------GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
                E               M  +G    +     ++D+LAR+G L  A  +   +  +
Sbjct: 160 ACFPHELYCLVGGVVLGLVHKMGLWGTDVAVG--SALIDMLARNGDLASARKVFDGL-IE 216

Query: 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLD-----LEPD 548
              V+W  L++    +   +  E A +  LD      EPD
Sbjct: 217 KTVVVWTLLISR---YVQGECAEEAVELFLDFLEDGFEPD 253


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/726 (33%), Positives = 394/726 (54%), Gaps = 59/726 (8%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           + +  L SC   +SL+  ++IH  +V S L      S+ L++ +   G    L  ++ +F
Sbjct: 147 TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCG---SLSHAKRVF 203

Query: 66  SQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           ++++   N+  W+ +   ++   +  EAL  +  ML  GI +  +     +L++C+  + 
Sbjct: 204 AKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKS-AMVTILSACSSPAL 262

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG--SLARDLVSYNTLI 182
            + G  IH  I   G E +L + NA++  Y   G +  A KVF+      RD+VS+N ++
Sbjct: 263 VQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 322

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y        A+ L+++MQ   ++ D  T+V++ SAC+   D  +G+  H  +  +   
Sbjct: 323 SAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE-- 377

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  N+++  A+++MYAKCG                           +T       AR +F
Sbjct: 378 LEKNVIVGNALVSMYAKCG--------------------------SHTE------ARAVF 405

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-------ESLGIHPDEVTMVAVLRAC 355
           D+M+QR ++SWT +IS Y +    ++A  LF +M        S  + PD +  V +L AC
Sbjct: 406 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 465

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             + AL+ GK + +Q   +     +  + TAV+++Y KCG I+    +F  +      V 
Sbjct: 466 ADVSALEQGKMVSEQ-AASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSR-PDVQ 523

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
           L+N++I+  AQ G    ++ +F  ME+ G++PD  +FV++L ACSH GL ++GK +F SM
Sbjct: 524 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 583

Query: 476 LN--YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
                 +   ++H+GC+ DLL R GRL EA   ++ +P   ++V W +LLAACR HR+ K
Sbjct: 584 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 643

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
             +    KLL LEP     YV LSN+ AE  +W    +VRK M + G++K  G S IE  
Sbjct: 644 RAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIG 703

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H F     +HP+ +EI   L  +  ++K  GYVP+T  V+  VDE+EKE ++  HSE
Sbjct: 704 KYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSE 763

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           +LA+A GLI++     +R+TKNLR+C DCH A KL+S+I  R+I+VRD  RFHLFK G C
Sbjct: 764 RLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKC 823

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 824 SCQDYW 829



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/502 (23%), Positives = 216/502 (43%), Gaps = 82/502 (16%)

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFG 158
           L K  V   N T+  +L  CAR  +   G +IH   +K   L  +L + N ++  Y+   
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
              +A   F+    R+L S+  L+  +A   +    L    +M+   ++PDA TF+    
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +C +    R G + H +V  +   +     +  A++NMY KCG ++ A+RVF+ M  +++
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEIDPK--VSNALLNMYKKCGSLSHAKRVFAKMERTRN 211

Query: 279 TAAWSSMISGYTREGKIERARQLFDQM--------------------------DQR---- 308
             +WS M   +   G +  A + F  M                          D R    
Sbjct: 212 VISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHS 271

Query: 309 ---------DLVSWTAMISGYSQVGGFSQALELFGKMES--------------------- 338
                    +L+   A+++ Y + G   +A ++F  M+                      
Sbjct: 272 CIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRG 331

Query: 339 ---------LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
                    + +  D+VT V++L AC     +  G+ LH+Q + N    +N+ +  A++ 
Sbjct: 332 KDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIV-NDELEKNVIVGNALVS 390

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM---ELMG-- 444
           MYAKCGS   A +VF K+ +  +++  + +IIS   +  L   +  +F++M   E  G  
Sbjct: 391 MYAKCGSHTEARAVFDKMEQ--RSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSS 448

Query: 445 --LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
             +KPD + FVT+L AC+    +E+GK   E   + G+         +V+L  + G ++E
Sbjct: 449 QRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEE 508

Query: 503 AYGLIQSMPYDANSVIWRALLA 524
              +   +    +  +W A++A
Sbjct: 509 GRRIFDGVCSRPDVQLWNAMIA 530



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 210/497 (42%), Gaps = 82/497 (16%)

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           ++   ++ +  T+  +   C        G++ H++  K+   +  N++L   +++MYA C
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKH-NLLPGNLILGNHIVSMYAHC 92

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
                      + G +K+                       FD ++QR+L SWT +++ +
Sbjct: 93  ----------DSPGDAKAA----------------------FDALEQRNLYSWTGLVAAF 120

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +  G   + L    +M   G+ PD VT +  L +C    +L  G R+HQ  +++     +
Sbjct: 121 AISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDS-RLEID 179

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL-AQHGLGETSIAVFRE 439
             ++ A+++MY KCGS+  A  VF K+ +    +S   SI++G  A HG    ++  FR 
Sbjct: 180 PKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW--SIMAGAHALHGNVWEALRHFRF 237

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVEEGKQF--------FES--------MLNYGIKPQ 483
           M L+G+K      VT+L ACS   LV++G+          FES        M  YG    
Sbjct: 238 MLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGA 297

Query: 484 MEH-----------------YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           +E                  +  M+     + R  +A  L Q M   A+ V + +LL+AC
Sbjct: 298 VEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRADKVTYVSLLSAC 357

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY----RWEEARQVRKLMDDSGIQ 582
               +  +G +  +++++ E +     V++ N L   Y       EAR V   M+   I 
Sbjct: 358 SSAEDVGLGRVLHKQIVNDELEKN---VIVGNALVSMYAKCGSHTEARAVFDKMEQRSI- 413

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV-QVVFDVDE 641
               W+ I  +  + R L ++  H   + +EL     + ++K       T+     DV  
Sbjct: 414 --ISWTTI-ISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSA 470

Query: 642 EEKETVVSYHSEKLALA 658
            E+  +VS  +    L+
Sbjct: 471 LEQGKMVSEQAASCGLS 487


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/715 (33%), Positives = 402/715 (56%), Gaps = 45/715 (6%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SSL+A     KSL     +H  ++ SG ++     +LI  +   G    L  +R LF +
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCG---SLAEARKLFDE 60

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + +I  WN+++  +      +EA+  Y +ML +G++ P+ +TF  +  + ++L   + 
Sbjct: 61  LPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVL-PDAYTFSAISKAFSQLGLIRH 119

Query: 128 GCQIHCHIIKFGLE-FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           G + H   +  GLE  D F+ +AL+  Y+ F  + +AH VF   L +D+V +  LI GYA
Sbjct: 120 GQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYA 179

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q      AL +F  M +  ++P+ +T   +   C  L D   G+  H +V K+       
Sbjct: 180 QHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKS------- 232

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                                      G+    A+ +S+++ Y+R   IE + ++F+Q+D
Sbjct: 233 ---------------------------GLESVVASQTSLLTMYSRCNMIEDSIKVFNQLD 265

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             + V+WT+ + G  Q G    A+ +F +M    I P+  T+ ++L+AC  L  L+ G++
Sbjct: 266 YANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQ 325

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H   ++  + G N +   A+I++Y KCG++D A SVF  +   L  V++ NS+I   AQ
Sbjct: 326 IHAITMKLGLDG-NKYAGAALINLYGKCGNMDKARSVF-DVLTELDVVAI-NSMIYAYAQ 382

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQME 485
           +G G  ++ +F  ++ MGL P+GVTF+++L AC++ GLVEEG Q F S+ N + I+  ++
Sbjct: 383 NGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTID 442

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           H+ CM+DLL R  RL+EA  LI+ +  + + V+WR LL +C++H   ++ E    K+L+L
Sbjct: 443 HFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILEL 501

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            P  G  ++LL+N+ A   +W +  +++  + D  ++K P  S+++ +  +H F+A   S
Sbjct: 502 APGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLS 561

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HP++ EI  ML  +  K+K+ GY PNT  V+ D+DEE+K + + YHSEKLA+A+ L  + 
Sbjct: 562 HPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTI 621

Query: 666 SK-ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +  TIRI KNLR+CGDCH   K +S +  R+I+ RD+ RFH FK G CSC D+W
Sbjct: 622 GRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/653 (35%), Positives = 358/653 (54%), Gaps = 49/653 (7%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+    P  L SC   S+ +    +H      G+  D F+ ++L+H Y  FG   +A  V
Sbjct: 21  PDPRLLPSALKSC---SALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSV 77

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM---------- 216
            +G   R +V ++ LI  +A   +   A  L  +M+   ++P+  T+  +          
Sbjct: 78  LDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRA 137

Query: 217 -------------------------FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
                                     SA  ++ D  +G+Q H  V K  GC   +  + T
Sbjct: 138 RDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK-AGCR-LDACVAT 195

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR--- 308
           A+I+MY KCG  +   RVF         A+ +++++G +R  ++  A +LF +   R   
Sbjct: 196 ALIDMYGKCGRADEIVRVFDESS-HMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIE 254

Query: 309 -DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            ++VSWT++++   Q G   +A++LF +M+S GI P+ VT+  VL A   + AL  G+  
Sbjct: 255 LNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSA 314

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   +    F  +I++ +A++DMYAKCG +  A  +F  +P   + V  +N++I G A H
Sbjct: 315 HCFSLRKG-FHHDIYVGSALVDMYAKCGRVRDARMIFEAMP--YRNVVSWNAMIGGYAMH 371

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G  E ++ +FR M+    KPD VTF  VL ACS  G  EEG+ +F  M + +GI P+MEH
Sbjct: 372 GEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEH 431

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMV LL R G+LD+AY +I  MP++ +  IW +LL +CR+H N  + E+A + L  LE
Sbjct: 432 YACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLE 491

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P++  +YVLLSN+ A    W+   ++R +M   G++K  G S+IE    +H  LA   SH
Sbjct: 492 PENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSH 551

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P    I   LK +TM+++  G+ P+T  V+ DV+E+EK+ ++S HSEKLA+A GLI++  
Sbjct: 552 PMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSH 611

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +++ KNLRICGDCH A K +S   RREI VRD  RFH FK G CSC D+W
Sbjct: 612 GTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 12/344 (3%)

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+  WN L+ G +RS   ++A++    M  +G + P+       L++   +     G Q
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFL-PDATGVSCALSAVGDVGDVAVGEQ 177

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H +++K G   D  +  ALI  Y   G  +   +VF+ S   D+ S N L+ G ++  +
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV-VYKNLGCVG--SNM 247
              AL LFR+     I+ +  ++ ++ + C +      G+   AV +++ +   G   N 
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQ-----NGRDLEAVDLFREMQSEGIEPNS 292

Query: 248 LLKTAVINMYAKCGLM--NMAERVFS-TMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +    V+  +A    +    +   FS   G        S+++  Y + G++  AR +F+ 
Sbjct: 293 VTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  R++VSW AMI GY+  G    A+ LF  M+S    PD VT   VL AC   G  + G
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           +    +          +     ++ +  + G +D A  +  ++P
Sbjct: 413 RSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMP 456



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 2/224 (0%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N+  W +++    ++    EA+ L+  M S+GI  PN+ T P VL + A +++   G   
Sbjct: 256 NVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI-EPNSVTIPCVLPAFANIAALMHGRSA 314

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           HC  ++ G   D+++ +AL+  Y+  G + +A  +FE    R++VS+N +I GYA   E 
Sbjct: 315 HCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEA 374

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             A+ LFR MQ S  +PD  TF  +  AC++      G+ +   +    G +   M    
Sbjct: 375 ENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHG-ISPRMEHYA 433

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            ++ +  + G ++ A  + + M        W S++      G +
Sbjct: 434 CMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNV 477



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 24  ALQIHGQIVH-----SGLNHHI-SSSQLISFFALSGCKNGLFR-SRILFSQIDNPNIFIW 76
           A  +HG+  H      G +H I   S L+  +A    K G  R +R++F  +   N+  W
Sbjct: 306 AALMHGRSAHCFSLRKGFHHDIYVGSALVDMYA----KCGRVRDARMIFEAMPYRNVVSW 361

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           N ++ GY+     + A+ L+ SM S     P+  TF  VL +C++    + G
Sbjct: 362 NAMIGGYAMHGEAENAVRLFRSMQSSK-EKPDLVTFTCVLGACSQAGWTEEG 412


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 343/609 (56%), Gaps = 44/609 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +L  C  +  FK   ++H HI+K GL +D F  + L+   ++  +G +  A  +F     
Sbjct: 37  LLKRCKSMEEFK---KVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEE 93

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                YNT+I G     +   AL L+ +M +  I+PD FT+  +  AC+ L   + G Q 
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQI 153

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA V+ N G +  ++ ++  +I+MY KCG                               
Sbjct: 154 HAHVF-NAG-LEVDVFVQNGLISMYGKCG------------------------------- 180

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-PDEVTMVAV 351
             IE A  +F+QMD++ + SW+++I  ++ V  + + L L G M   G H  +E  +V+ 
Sbjct: 181 -AIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSA 239

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  LG+ + G+ +H   + N+    N+ + T++IDMY KCGS++  L VF  +    
Sbjct: 240 LSACTHLGSPNLGRCIHGILLRNIS-ELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAH-- 296

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K    +  +I+GLA HG G  ++ VF +M   GL PD V +V VL ACSH GLV+EG Q 
Sbjct: 297 KNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQC 356

Query: 472 FESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  M   + IKP ++HYGCMVDL+ R G L EAY LI+SMP   N V+WR+LL+AC++H 
Sbjct: 357 FNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHH 416

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N +IGEIA   +  L   +   Y++L+NM A   +W    ++R  M +  + + PG+S +
Sbjct: 417 NLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLV 476

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E N  +++F++  KS PQ + I  M++ M  +LK  GY P+  QV+ DVDE+EK   + +
Sbjct: 477 EANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKH 536

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HS+KLA+AF LI +     +RI++NLR+C DCH   K +S IY REI VRD+ RFH FK 
Sbjct: 537 HSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKD 596

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 597 GTCSCKDYW 605



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 208/418 (49%), Gaps = 39/418 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL+ CKS+++  ++H  I+  GL +     S L++  ALS   +  +   I F QI+ 
Sbjct: 35  LSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSI-FRQIEE 93

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P  F +NT++RG   S   +EAL+LY  ML +GI  P+NFT+PFVL +C+ L + K G Q
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGI-EPDNFTYPFVLKACSLLVALKEGVQ 152

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH H+   GLE D+F++N LI  Y   G I +A  VFE    + + S++++I  +A V+ 
Sbjct: 153 IHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEM 212

Query: 191 PCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               L L   M ++   + +    V+  SACT L  P +G+  H ++ +N+  +  N+++
Sbjct: 213 WHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISEL--NVVV 270

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           KT++I+MY KCG                                 +E+   +F  M  ++
Sbjct: 271 KTSLIDMYVKCG--------------------------------SLEKGLCVFQNMAHKN 298

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
             S+T MI+G +  G   +AL +F  M   G+ PD+V  V VL AC   G +  G +   
Sbjct: 299 RYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFN 358

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           +     +    I     ++D+  + G +  A  +   +P     V ++ S++S    H
Sbjct: 359 RMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDV-VWRSLLSACKVH 415


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/632 (38%), Positives = 387/632 (61%), Gaps = 19/632 (3%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSR 62
           L L H SL+ LLE C S  Q  QI G ++ + L       S+L+ F A+S  +N L  + 
Sbjct: 28  LKLNHPSLI-LLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPEN-LELAI 85

Query: 63  ILFSQIDN-PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           +LF+     PN++I+NT++ G+  S+  ++A  +Y SML  G   P+  TF ++L +   
Sbjct: 86  LLFNHFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNG-TYPDRQTFLYLLQTTKF 142

Query: 122 LSSFKSGCQIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++  K   QIHCH + FGL   + ++RN+LI  Y   G    A ++F+    R++VSYNT
Sbjct: 143 VAEVK---QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNT 199

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I G+A+V      L LF  M+   ++PD FT + +   C +L + ++GK  HA + K++
Sbjct: 200 MILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSI 259

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G   SN++L  A+++MY KC  + +A +VF    M K T +W+++I+GY + G++E A  
Sbjct: 260 G--SSNLILYNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELACD 316

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF+Q+  RD+VSW ++ISGY+Q G +     LF +M +  + PD+VT+V ++ A   +GA
Sbjct: 317 LFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGA 376

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G+ +H   ++ ++     F  +A+IDMY KCGSI+ A  +F +IP+  K V+ + ++
Sbjct: 377 LDQGRWIHGLAVK-MLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPE--KDVTTWTTM 433

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YG 479
           I+G A HG G  ++ +F  M+    KP+ VTFV+VL ACSH GLV+EG + F SM   Y 
Sbjct: 434 ITGFAFHGFGNKALELFSVMQ-AETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYS 492

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           I+P +EHYGC+VDLL R GRL +A G+I+ MP + +  IW A+L+ACR+HRN ++ E A 
Sbjct: 493 IEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERAL 552

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
            +LL LEP+    Y+LLSN+ A   RW  +  +R++M+  G++K  G S +  +G +H F
Sbjct: 553 MELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDF 612

Query: 600 LASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
            AS K HP+  +I  +L  +T +++    VP+
Sbjct: 613 TASNKQHPRWMDICSILSFLTNEMRLEADVPS 644


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/696 (33%), Positives = 385/696 (55%), Gaps = 43/696 (6%)

Query: 27  IHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +HG  V   L+   + ++ L+  ++  GC   +  S+++F   +N N+  WNT++ G+S 
Sbjct: 298 VHGWAVKLSLDKELVVNNALMDMYSKWGC---IIDSQMIFKLNNNKNVVSWNTMVGGFSA 354

Query: 86  SDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
                    L   ML+    V  +  T    +  C   S   S  ++HC+ +K    +D 
Sbjct: 355 EGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDE 414

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
            + NA +  Y+  G ++ A +VF G  ++ L S+N LI GYAQ  +P  +L    +M++S
Sbjct: 415 LLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNS 474

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            + PD FT  ++ SAC++L   R+GK+ H  + +N   +  ++ +  +V+++Y  CG   
Sbjct: 475 GLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW--LERDLFVYLSVLSLYIHCG--- 529

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                                        ++   + LFD M+   LVSW  +I+G+ Q G
Sbjct: 530 -----------------------------ELCTVQVLFDAMEDNSLVSWNTVITGHLQNG 560

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +AL LF +M   GI P  ++M+ V  AC  L +L  G+  H   +++++   N F+ 
Sbjct: 561 FPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLL-EDNAFIA 619

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            ++IDMYAK G+I  +  VF  + +  K+ + +N++I G   HG  + +I +F EM+  G
Sbjct: 620 CSIIDMYAKNGAITQSSKVFNGLKE--KSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTG 677

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
             PD +TF+ VL AC+H GL+ EG ++ + M + +G+KP ++HY C++D+L R G+LD A
Sbjct: 678 RNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNA 737

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
             +   M  + +  IW +LL+ CR+H+N ++GE    KL  LEP+   +YVLLSN+ A  
Sbjct: 738 LRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGL 797

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            +W++ RQVR+ M +  ++K  G S+IE NG +  F+  ++     +EI+ +   + MK+
Sbjct: 798 GKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKI 857

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
              GY P+T  V  D+ EEEK   +  HSEKLA+ +GLI +    T+R+ KNLRIC DCH
Sbjct: 858 WKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCH 917

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            A KL+S++  REI+VRD  RFH F KG CSC D+W
Sbjct: 918 NAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/563 (24%), Positives = 263/563 (46%), Gaps = 94/563 (16%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           +++I+ +A+ G  +    SR  F  + + N+F WN ++  YSR++   E L ++  M+SK
Sbjct: 124 TRIITMYAMCGSPDD---SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISK 180

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             + P+NFTFP V+ +CA +S    G  +H  ++K GL  DLF+ NAL+ FY   G++++
Sbjct: 181 THLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSD 240

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A K+F+    R+LVS+N++I  ++   +            D    PD  T V +   C  
Sbjct: 241 ALKLFDIMPERNLVSWNSMIRVFSDNGD------------DGAFMPDVATVVTVLPVCAR 288

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
             +  +GK  H    K    +   +++  A+++MY+K G +  ++ +F  +  +K+  +W
Sbjct: 289 EREIGVGKGVHGWAVKL--SLDKELVVNNALMDMYSKWGCIIDSQMIFK-LNNNKNVVSW 345

Query: 283 SSMISGYTREGKIERARQLFDQM----------------------DQRDLVSW------- 313
           ++M+ G++ EG I     L  QM                      D+  L S        
Sbjct: 346 NTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYS 405

Query: 314 ------------TAMISGYSQVGGFSQALELFGKME----------------------SL 339
                        A ++ Y++ G  S A  +F  +                       SL
Sbjct: 406 LKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSL 465

Query: 340 GIH---------PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
             H         PD  T+ ++L AC  L +L  GK +H   I N +  R++F+  +V+ +
Sbjct: 466 DAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL-ERDLFVYLSVLSL 524

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           Y  CG + T   +F  +  N  ++  +N++I+G  Q+G  E ++ +FR+M L G++P G+
Sbjct: 525 YIHCGELCTVQVLFDAMEDN--SLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGI 582

Query: 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           + +TV  ACS    +  G++     L + ++        ++D+ A++G + ++  +   +
Sbjct: 583 SMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGL 642

Query: 511 PYDANSVIWRALLAACRLHRNAK 533
             + ++  W A++    +H  AK
Sbjct: 643 K-EKSAASWNAMIMGYGMHGRAK 664



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           SLL+     KSL+   ++HG I+ + L   +     +S  +L      L   ++LF  ++
Sbjct: 485 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV--YLSVLSLYIHCGELCTVQVLFDAME 542

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + ++  WNT++ G+ ++  P+ AL L+  M+  GI  P   +   V  +C+ L S + G 
Sbjct: 543 DNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGI-QPCGISMMTVFGACSLLPSLRLGR 601

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           + H + +K  LE + FI  ++I  Y+  G I  + KVF G   +   S+N +I GY    
Sbjct: 602 EAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHG 661

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ LF +MQ +   PD  TF+ + +AC        G ++   +  + G +  N+  
Sbjct: 662 RAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFG-LKPNLKH 720

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
              VI+M  + G ++ A RV + M        W+S++S
Sbjct: 721 YACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLS 758



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 154/352 (43%), Gaps = 57/352 (16%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFG--LEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
            +L +  +    + G +IH H++     L  D  +   +I  Y++ G  +++   F+   
Sbjct: 89  LLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALR 147

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGK 230
           +++L  +N +I+ Y++ +     L +F KM   + + PD FTF  +  AC  ++D  IG 
Sbjct: 148 SKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
             H +V K                                   G+ +     ++++S Y 
Sbjct: 208 AVHGLVVKT----------------------------------GLVEDLFVGNALVSFYG 233

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             G +  A +LFD M +R+LVSW +MI  +S  G            +     PD  T+V 
Sbjct: 234 THGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVT 281

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL  C     +  GK +H   ++ +   + + +  A++DMY+K G I  +  +F K+  N
Sbjct: 282 VLPVCAREREIGVGKGVHGWAVK-LSLDKELVVNNALMDMYSKWGCIIDSQMIF-KLNNN 339

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPDGVTFVTVLCAC 459
              VS +N+++ G +  G    +  + R+M L G   +K D VT +  +  C
Sbjct: 340 KNVVS-WNTMVGGFSAEGDIHGTFDLLRQM-LAGSEDVKADEVTILNAVPVC 389


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/622 (36%), Positives = 366/622 (58%), Gaps = 56/622 (9%)

Query: 15  LESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           + SCK+ KQ  QI  QI+ +G   N +I+  +L++  A       +  +R LF QI +PN
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITP-KLVTICA---TLKRMTYARQLFDQIPDPN 163

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLSSFKSGCQI 131
           I +WN++ RGY++S+S +E + L+  M  KG+ + PN FTFP VL SC ++++   G Q+
Sbjct: 164 IALWNSMFRGYAQSESYREVVFLFFQM--KGMDIRPNCFTFPVVLKSCGKINALIEGEQV 221

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           HC +IK G   + F+   LI  YS  G + +A+K+F     R++V++ ++INGY      
Sbjct: 222 HCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGY------ 275

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
                         +  D  +   +F    E                       +++L  
Sbjct: 276 -------------ILSADLVSARRLFDLAPE----------------------RDVVLWN 300

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
            +++ Y + G M  A ++F  M  ++    W++++ GY   G +E    LF++M +R++ 
Sbjct: 301 IMVSGYIEGGDMVEARKLFXEMP-NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 359

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           SW A+I GY+  G F + L  F +M S   + P++ T+V VL AC  LGALD GK +H  
Sbjct: 360 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH-V 418

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y E+     N+++  A++DMYAKCG I+ A+SVF  +  + K +  +N++I GLA H  G
Sbjct: 419 YAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM--DTKDLISWNTLIGGLAMHSRG 476

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC 489
             ++ +F +M+  G KPDG+TF+ +LCAC+H GLVE+G  +F+SM  +Y I PQ+EHYGC
Sbjct: 477 ADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGC 536

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVD+LAR GRL++A   ++ MP +A+ VIW  LL ACR+++N ++ E+A Q+L++LEP +
Sbjct: 537 MVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKN 596

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
            A+YV+LSN+  +  RWE+  +++  M D+G +K PG S IE N  +  F +  + HPQ 
Sbjct: 597 PANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQI 656

Query: 610 KEIELMLKDMTMKLKSAGYVPN 631
           +EI  +L+ +   L+S GYVP+
Sbjct: 657 EEIYGVLRGLVKVLRSFGYVPD 678


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 346/601 (57%), Gaps = 39/601 (6%)

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           L  G ++P    +   + +CA+  +     +IH H+       D F+ N+LIH Y   G 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGS 101

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +  AHKVF+    +D+VS+ +LI GYAQ   P  A+ L   M     +P+ FTF ++  A
Sbjct: 102 VVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 220 CTELNDPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
                D  IG Q HA+  K   C    ++ + +A+++MYA+CG M+MA  VF  +  SK+
Sbjct: 162 VGAYADSGIGGQIHALAVK---CDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKN 217

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W+++ISG+ R+G  E                                AL +F +M+ 
Sbjct: 218 GVSWNALISGFARKGDGE-------------------------------TALMVFAEMQR 246

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G      T  ++  A  G+GAL+ GK +H   I++       F+   ++DMYAK GS+ 
Sbjct: 247 NGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQ-KLTAFVGNTMLDMYAKSGSMI 305

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF ++    K +  +NS+++  AQ+GLG+ +++ F EM   G+  + ++F+ +L A
Sbjct: 306 DARKVFERVLN--KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTA 363

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           CSHGGLV+EGK +F+ +  Y ++P++EHY  +VDLL R G L+ A   I  MP +  + +
Sbjct: 364 CSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAV 423

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W ALLAACR+H+NAK+G+ A   +  L+PD     VLL N+ A T  W+ A +VRK+M  
Sbjct: 424 WGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKA 483

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
           +G++K P  S++E   ++H F+A+  +HP+ +EI  M  +++MK++  GYVP+   V+  
Sbjct: 484 TGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLH 543

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           VDE+E+E  + YHSEK+ALAF LI   +  TIRI KN+RICGDCH AFK +S+++ REI+
Sbjct: 544 VDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIV 603

Query: 699 V 699
           +
Sbjct: 604 I 604



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 205/445 (46%), Gaps = 56/445 (12%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNG-LFRSRILFSQ 67
           A + +C   K+L  A +IH  +  S         + LI  +    CK G +  +  +F +
Sbjct: 56  AFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLY----CKCGSVVEAHKVFDK 111

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + N ++  W +L+ GY+++D P EA+ L   ML KG   PN FTF  +L +    +    
Sbjct: 112 MRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGML-KGRFKPNGFTFASLLKAVGAYADSGI 170

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G QIH   +K     D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI+G+A+
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN----LGCV 243
             +   AL +F +MQ +  +   FT+ ++FSA   +     GK  HA + K+       V
Sbjct: 231 KGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFV 290

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G+ ML      +MYAK G M  A +VF  + ++K    W+SM                  
Sbjct: 291 GNTML------DMYAKSGSMIDARKVFERV-LNKDLVTWNSM------------------ 325

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                        ++ ++Q G   +A+  F +M   GI+ ++++ + +L AC   G +  
Sbjct: 326 -------------LTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKE 372

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK  +   I+       I     V+D+  + G ++ AL   +K+P    T +++ ++++ 
Sbjct: 373 GKH-YFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPME-PTAAVWGALLAA 430

Query: 424 LAQHGLGETSIAVFREMELMGLKPD 448
              H      +  F    +  L PD
Sbjct: 431 CRMH--KNAKVGQFAADHVFQLDPD 453



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 156/322 (48%), Gaps = 14/322 (4%)

Query: 26  QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           QIH   V    +  +   S L+  +A  G  +    +  +F ++D+ N   WN L+ G++
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMD---MATAVFDKLDSKNGVSWNALISGFA 229

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R    + AL+++  M   G  +  +FT+  + ++ A + + + G  +H H+IK   +   
Sbjct: 230 RKGDGETALMVFAEMQRNGFEA-THFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTA 288

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N ++  Y+  G + +A KVFE  L +DLV++N+++  +AQ      A+  F +M+ S
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLM 263
            I  +  +F+ + +AC+     + GK +  ++ + NL      +     V+++  + GL+
Sbjct: 349 GIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNL---EPEIEHYVTVVDLLGRAGLL 405

Query: 264 NMAERVFSTMGMSKSTAAWSSMISG--YTREGKIER--ARQLFDQMDQRDLVSWTAMISG 319
           N A      M M  + A W ++++     +  K+ +  A  +F Q+D  D      + + 
Sbjct: 406 NYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVF-QLDPDDSGPPVLLYNI 464

Query: 320 YSQVGGFSQALELFGKMESLGI 341
           Y+  G +  A  +   M++ G+
Sbjct: 465 YASTGHWDAAARVRKMMKATGV 486


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/668 (34%), Positives = 367/668 (54%), Gaps = 41/668 (6%)

Query: 54  CKNGLFRS-RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           CK+GL  + R +F ++ + +   +N +M G S+  S  EAL L+ +M  KG+ +   FTF
Sbjct: 186 CKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAA-TRFTF 244

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             VL     +     G Q+H  ++      ++F+ N+L+ FYS    ++   K+F   + 
Sbjct: 245 STVLTVATGVGDLCLGRQVH-GLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIE 303

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD VSYN +I GYA  +     L LFR+MQ       A  + ++ S    +    IGKQ 
Sbjct: 304 RDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQI 363

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA +   L  + S  L+  A+I+MY+KC                                
Sbjct: 364 HAQLV--LLGLSSEDLVGNALIDMYSKC-------------------------------- 389

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G ++ A+  F   + +  VSWTAMI+G  Q G   +AL+LF  M   G+ PD  T  + +
Sbjct: 390 GMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTI 449

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +A   L  +  G++LH   I +     ++F  +A++DMY KCG +D AL  F ++P+   
Sbjct: 450 KASSNLAMIGLGRQLHSYLIRSGHMS-SVFSGSALLDMYTKCGCLDEALQTFDEMPER-N 507

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           ++S +N++IS  A +G  + +I +F  M   G KPD VTF++VL ACSH GL EE  ++F
Sbjct: 508 SIS-WNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYF 566

Query: 473 ESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           E M   YGI P  EHY C++D L R GR D+   ++  MP++ + +IW ++L +CR H N
Sbjct: 567 ELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGN 626

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             +  +A +KL  +       YV+LSN+ A+  +WE+A  V+K+M D G++K  G+S++E
Sbjct: 627 QDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVE 686

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
               ++ F ++ +++P   EI+  L+ +  ++   GY P+T   +  VD++ K   + YH
Sbjct: 687 VKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYH 746

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+AF LIN+     IR+ KNL  C DCH A K++S+I  R+I+VRD+ RFH FK G
Sbjct: 747 SERLAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDG 806

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 807 FCSCGDYW 814



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 156/347 (44%), Gaps = 11/347 (3%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRS 61
           R  L ++SLL++  S   +    QIH Q+V  GL +  +  + LI  ++  G    L  +
Sbjct: 339 RQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGM---LDAA 395

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           +  F   ++     W  ++ G  ++   +EAL L+  M   G+ SP+  TF   + + + 
Sbjct: 396 KTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGL-SPDRATFSSTIKASSN 454

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L+    G Q+H ++I+ G    +F  +AL+  Y+  G ++ A + F+    R+ +S+N +
Sbjct: 455 LAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAV 514

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+ YA   +   A+ +F  M     +PD+ TF+++ SAC+         ++  ++    G
Sbjct: 515 ISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYG 574

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR-- 299
            +       + VI+   + G  +  + +   M        WSS++      G  + AR  
Sbjct: 575 -ISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVA 633

Query: 300 --QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
             +LF  M   D   +  + + +++ G +  A  +   M   G+  +
Sbjct: 634 AEKLF-SMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKE 679


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/472 (43%), Positives = 297/472 (62%), Gaps = 6/472 (1%)

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKS--TAAWSSMISGYTREGKIERARQLFDQMDQR 308
            A++  Y   G  ++A R+F +          +W++M+ G  R G ++ AR+LFD M +R
Sbjct: 131 NALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPER 190

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +L+SW AMISGY + G F  ALE+F +M +LGI  +     + + AC G G L  G+ +H
Sbjct: 191 NLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVH 250

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
           + ++E      +  L TAV+DMY KCGS++ A  VF  +P   K ++ +N +I GLA HG
Sbjct: 251 R-WVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPT--KGLTSWNCMIGGLAVHG 307

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
             + +I +F EME   + PD VT V VL AC+H G+V +G  +F  ++  YGI+P+MEHY
Sbjct: 308 RCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHY 367

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDL  R G LDEA  +I  MP + +  +  AL  AC++HR+  +GE  G ++++L+P
Sbjct: 368 GCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDP 427

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
            +   YVLL+N+LA   +W +  +VR+LMD+  + K  G S IE +G +  F      H 
Sbjct: 428 QNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHA 487

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q KEI   +KDM  K++  GY+P+T  V+ D+ EEEKE  + YHSEKLA+AFGL+ +R  
Sbjct: 488 QEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPG 547

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +T+RITKNLR+C DCH A K +S ++ REI+VRD  RFH FK G CSC D+W
Sbjct: 548 DTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 109/245 (44%), Gaps = 5/245 (2%)

Query: 44  QLISFFALSG--CKNGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
            ++S+  + G  C+ GL   +R LF  +   N+  WN ++ GY ++    +AL ++  M 
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
           + GI   N F     + +C        G ++H  + + G+  D  +  A++  Y   G +
Sbjct: 220 ALGIEG-NGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSV 278

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
             A  VF+    + L S+N +I G A       A+ LF +M+   + PD  T V + +AC
Sbjct: 279 EEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTAC 338

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
                   G  +   + +  G +   M     +++++ + GL++ A++V   M M     
Sbjct: 339 AHTGMVSDGHNYFNYIVQRYG-IEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIG 397

Query: 281 AWSSM 285
              ++
Sbjct: 398 VLGAL 402


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 346/621 (55%), Gaps = 44/621 (7%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           +P   TF  ++NSC   +S   G  +H  ++  GL+ D ++   LI+ Y   G +++A K
Sbjct: 71  NPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACK 130

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC--TEL 223
           VF+ +  + +  +N +    A        L L+ +M    I  + FT+  +  AC  +EL
Sbjct: 131 VFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSEL 190

Query: 224 N--DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
           +    R GK+ HA + ++                                  G       
Sbjct: 191 SICPLRKGKEIHAHILRH----------------------------------GYEGHVHV 216

Query: 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM--ESL 339
            ++++  Y R G +  A  +F  M  +++VSW+AMI+ Y++     +ALELF  M  E+ 
Sbjct: 217 MTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEAC 276

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
              P+ +TMV+VL+AC  L AL+ GK +H  Y+        + +   +I MY +CG I T
Sbjct: 277 DTVPNPITMVSVLQACASLAALEHGKLVHA-YVLRRGLDSTLPVLNTLITMYGRCGEIST 335

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
              VF  + K  + V  +NS+IS    HGLG+ +I +F  M   G+ P  +TF+TVLCAC
Sbjct: 336 GQRVFDYMKK--RDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCAC 393

Query: 460 SHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLVEE K  FESMLN Y I P+MEHY CMVD+L R  RLDEA  LIQ+M +     +
Sbjct: 394 SHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTV 453

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W +LL +CR+H N ++ E A   L +LEP +  +YVLLS++ A++  W + R+VRK ++ 
Sbjct: 454 WGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLES 513

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
            G+QK P  S+IE    ++  ++ ++ +PQ +E+   L  +  ++K+ GYVP T  V +D
Sbjct: 514 RGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYD 573

Query: 639 VDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
           +DEEEKE +V  HS KLA+AFGLIN+   E IRI+ NLR+C DCH   K +S+   REI+
Sbjct: 574 LDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREIL 633

Query: 699 VRDAIRFHLFKKGNCSCMDFW 719
           +RD  RFH FK G CSC D+W
Sbjct: 634 LRDVNRFHCFKDGVCSCGDYW 654



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 174/345 (50%), Gaps = 22/345 (6%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQID 69
           L+ SC    SL   + +H ++V SGL+     +++LI+ +   G  +   +   +F +  
Sbjct: 80  LINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACK---VFDETR 136

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA----RLSSF 125
              IF+WN + R  + +   ++ LVLY  M   GI S N FT+ +VL +C      +   
Sbjct: 137 EKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPS-NRFTYTYVLKACVVSELSICPL 195

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G +IH HI++ G E  + +   L+  Y+ FGY++ A  VF     +++VS++ +I  Y
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 186 AQVKEPCPALWLFRKMQ-DSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           A+ + P  AL LF+ M  ++C   P+  T V++  AC  L     GK  HA V +    +
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR--GL 313

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S + +   +I MY +CG ++  +RVF  M   +   +W+S+IS Y   G  ++A Q+F+
Sbjct: 314 DSTLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVISWNSLISIYGMHGLGKKAIQIFE 372

Query: 304 QMDQRDL----VSWTAMISGYSQVGGFSQALELFGKM-ESLGIHP 343
            M  R +    +++  ++   S  G   +A  LF  M     IHP
Sbjct: 373 NMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHP 417


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/729 (32%), Positives = 382/729 (52%), Gaps = 80/729 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F +I + +I +W  L+  Y        A+ L+  +L +GI + +   F  VL++C+   
Sbjct: 84  VFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGI-ALDAIVFVSVLSACSSEE 142

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR--DLVSYNTL 181
              +G  IH   ++ GL     + +AL+  Y   G + +A+ +F G L R  D+V +N +
Sbjct: 143 FLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALF-GHLERHLDVVLWNAM 201

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG--KQFHAVVYKN 239
           I   +Q   P  AL +F +M    I PD  TFV++F AC+     R    K FH  + + 
Sbjct: 202 ITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDET 261

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR-------- 291
              +GS++++ TA++N YA+CG ++ A   F+ M   ++  +W+SMI+ + +        
Sbjct: 262 --GLGSDVVVATALVNAYARCGEIDCAREFFAAMP-ERNAVSWTSMIAAFAQIGHLLAVE 318

Query: 292 -------EGKIERARQLFDQMD--------------------QRDLVSWTAMISGYSQVG 324
                  EG +     LF  ++                      D+   T ++  Y++  
Sbjct: 319 TFHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCD 378

Query: 325 GFSQALELFGKME---------------------------------SLGIHPDEVTMVAV 351
           G   A+ +F   E                                   GI PD +  +  
Sbjct: 379 GQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITA 438

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  L AL  G+++H     +    R++ L  A++ MY +CGS+  A   F  +P   
Sbjct: 439 LDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARD 498

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           +    +N+++S  AQHG  E    +FR M   G   + V F+ +L AC+H GLVE G + 
Sbjct: 499 EIS--WNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEH 556

Query: 472 FESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F +M  ++G+ P  EHYGCMVDLL R GRL +A+G++Q+MP   ++  W AL+ ACR++ 
Sbjct: 557 FSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYG 616

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           + + G  A +++L+L  +H A YV L N+ +   RWE+A  VRK+M D G++K PG S I
Sbjct: 617 DTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSI 676

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E    +H F+   +SHPQ++ I   L+ +   ++ AGY   T +V+ DV+EE+KE ++ +
Sbjct: 677 EIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRF 736

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+AFG++++    T+R+ KNLR+C DCH A K +S+++ REI+VRD  RFH FK 
Sbjct: 737 HSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKD 796

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 797 GACSCGDYW 805



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 130/245 (53%), Gaps = 5/245 (2%)

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           SS++  Y R G +E A  +F ++  + +V WT +IS Y   G  + A+ LF ++   GI 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIA 125

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D +  V+VL AC     L  G+ +H+  +E    G    + +A++ MY +CGS+  A +
Sbjct: 126 LDAIVFVSVLSACSSEEFLAAGRLIHRCAVE-AGLGLQEIVASALVSMYGRCGSLRDANA 184

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           +F  + ++L  V L+N++I+  +Q+G    ++ +F  M  +G+ PD VTFV+V  ACS  
Sbjct: 185 LFGHLERHLDVV-LWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSS 243

Query: 463 GLVEEG--KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
             +     K F   +   G+   +     +V+  AR G +D A     +MP + N+V W 
Sbjct: 244 PSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMP-ERNAVSWT 302

Query: 521 ALLAA 525
           +++AA
Sbjct: 303 SMIAA 307



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 37/318 (11%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D ++ ++L++ Y   G + +A  VF     + +V +  LI+ Y        A+ LF ++ 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              I  DA  FV++ SAC+       G+  H    +    +G   ++ +A+++MY +CG 
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVE--AGLGLQEIVASALVSMYGRCGS 178

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A  +F  +        W++MI                               +  SQ
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMI-------------------------------TANSQ 207

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK-RLHQQYIENVVFGRNI 381
            G   +ALE+F +M  LGI PD VT V+V +AC    +L   + +     ++    G ++
Sbjct: 208 NGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDV 267

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            + TA+++ YA+CG ID A   F  +P+  +    + S+I+  AQ G    ++  F  M 
Sbjct: 268 VVATALVNAYARCGEIDCAREFFAAMPE--RNAVSWTSMIAAFAQIG-HLLAVETFHAML 324

Query: 442 LMGLKPDGVTFVTVLCAC 459
           L G+ P   T    L  C
Sbjct: 325 LEGVVPTRSTLFAALEGC 342



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 168/384 (43%), Gaps = 29/384 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQA--LQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL 58
           ++ +V   S+L A LE C+ L  A  ++   Q +    +  I +  ++++    G ++ +
Sbjct: 325 LEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAI 384

Query: 59  FRSRILFSQIDNP-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
              R+  ++ +   +  +   ++  Y++    +    L+ + + +GI SP+   +   L+
Sbjct: 385 ---RVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGI-SPDRILYITALD 440

Query: 118 SCARLSSFKSGCQIH-CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +CA L++   G QIH C      L+ D+ + NA++  Y   G + +A   F+G  ARD +
Sbjct: 441 ACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEI 500

Query: 177 SYNTLINGYAQ---VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           S+N +++  AQ   V++ C    LFR M       +   F+ + SAC        G +  
Sbjct: 501 SWNAMLSASAQHGRVEDCCD---LFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHF 557

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           + +  + G V +       ++++  + G +  A  +   M +    A W +++      G
Sbjct: 558 SAMTGDHGVVPATEHYGC-MVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYG 616

Query: 294 KIERAR---QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             ER R   +   ++      ++ A+ + YS  G +  A  +   M  LG          
Sbjct: 617 DTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLG---------- 666

Query: 351 VLRACVGLGALDFGKRLHQQYIEN 374
            LR   G+ +++   ++H+  + +
Sbjct: 667 -LRKIPGVSSIEIRSKVHEFVVRD 689



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           D    V ++R C    ++  GK LH +   +    R+ +L ++++ MY +CGS+++A+ V
Sbjct: 28  DSAAAVRLVREC---NSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDV 84

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F+KI    K++ L+  +IS     G    +IA+F  +   G+  D + FV+VL ACS   
Sbjct: 85  FHKIAH--KSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEE 142

Query: 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            +  G+      +  G+  Q      +V +  R G L +A  L   +    + V+W A++
Sbjct: 143 FLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMI 202

Query: 524 AA 525
            A
Sbjct: 203 TA 204


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/688 (36%), Positives = 372/688 (54%), Gaps = 90/688 (13%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           V+PNN+TFPF L +C+ L+    G  IH H I  GL+ DLF+  AL+  Y     + +A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 165 KVFEGSLARDLVSYNTLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
            +F    ARDLV++N ++ GYA   +     A  L  +MQ   ++P+A T VA+     +
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSN----------MLLKTAVINMYAKCGLMNMAERVFST 272
                 G   HA   +   C+  N          +LL TA+++MYAKCG +  A RVF  
Sbjct: 126 QGALAQGTSVHAYCIR--ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR------------------------ 308
           M  +++   WS++I G+    ++ +A  LF  M  +                        
Sbjct: 184 MP-ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLR 242

Query: 309 ----------------DLVSWTAMISGYSQVGGFSQALELFG------------------ 334
                           DL +  +++S Y++ G   QA+ LF                   
Sbjct: 243 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 302

Query: 335 -------------KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
                        KM++  + PD  TMV+++ AC  L AL  G+  H   I   +     
Sbjct: 303 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL-ASET 361

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            +  A+IDMYAKCG ID +  VF  +P   + +  +N++I+G   HGLG+ + A+F EM 
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNMMPS--RDIVSWNTMIAGYGIHGLGKEATALFLEMN 419

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
            +G  PDGVTF+ +L ACSH GLV EGK +F  M + YG+ P+MEHY CMVDLL+R G L
Sbjct: 420 NLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFL 479

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
           DEAY  IQSMP  A+  +W ALL ACR+++N  +G+   + + +L P+   ++VLLSN+ 
Sbjct: 480 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIY 539

Query: 561 AETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMT 620
           +   R++EA +VR +    G +K PG S+IE NG+LH F+   +SHPQ+ EI   L ++ 
Sbjct: 540 SAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNIL 599

Query: 621 MKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICG 680
           + +K  GY P+T  V+ D++EEEKE  +  HSEKLA+A+G+++    +TI +TKNLR+CG
Sbjct: 600 VGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCG 659

Query: 681 DCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           DCH   K +S + RR I+VRDA RFH F
Sbjct: 660 DCHTVIKHISLVKRRAIIVRDANRFHHF 687


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/718 (33%), Positives = 404/718 (56%), Gaps = 47/718 (6%)

Query: 9   SSLLALLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRIL 64
           ++L+ +L  C   + +     +HG  V   L+   + ++ L+  ++  GC   +  ++++
Sbjct: 43  ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGC---ITNAQMI 99

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLS 123
           F   +N N+  WNT++ G+S          +   ML+ G  V  +  T    +  C   S
Sbjct: 100 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHES 159

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
              S  ++HC+ +K    ++  + NA +  Y+  G ++ A +VF G  ++ + S+N LI 
Sbjct: 160 FLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 219

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ  +P  +L    +M+ S + PD+FT  ++ SAC++L   R+GK+ H  + +N   +
Sbjct: 220 GHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW--L 277

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ +  +V+++Y  CG                                ++   + LFD
Sbjct: 278 ERDLFVYLSVLSLYIHCG--------------------------------ELCTVQALFD 305

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M+ + LVSW  +I+GY Q G   +AL +F +M   GI    ++M+ V  AC  L +L  
Sbjct: 306 AMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRL 365

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+  H   +++++   + F+  ++IDMYAK GSI  +  VF  + +  K+ + +N++I G
Sbjct: 366 GREAHAYALKHLL-EDDAFIACSLIDMYAKNGSITQSSKVFNGLKE--KSTASWNAMIMG 422

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
              HGL + +I +F EM+  G  PD +TF+ VL AC+H GL+ EG ++ + M + +G+KP
Sbjct: 423 YGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKP 482

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLI-QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
            ++HY C++D+L R G+LD+A  ++ + M  +A+  IW++LL++CR+H+N ++GE    K
Sbjct: 483 NLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAK 542

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L +LEP+   +YVLLSN+ A   +WE+ R+VR+ M++  ++K  G S+IE N  +  F+ 
Sbjct: 543 LFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVV 602

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
            ++     +EI+ +   + MK+   GY P+T+ V  D+ EEEK   +  HSEKLAL +GL
Sbjct: 603 GERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGL 662

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I +    TIR+ KNLRIC DCH A KL+S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 663 IKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 224/456 (49%), Gaps = 55/456 (12%)

Query: 8   HSSLLALLES--CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           H S L  L+   C SLKQ   ++ ++V         ++  ++ +A  G    L  ++ +F
Sbjct: 157 HESFLPSLKELHCYSLKQEF-VYNELV---------ANAFVASYAKCG---SLSYAQRVF 203

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             I +  +  WN L+ G+++S+ P+ +L  +  M   G++ P++FT   +L++C++L S 
Sbjct: 204 HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL-PDSFTVCSLLSACSKLKSL 262

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G ++H  II+  LE DLF+  +++  Y   G +     +F+    + LVS+NT+I GY
Sbjct: 263 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 322

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q   P  AL +FR+M    IQ    + + +F AC+ L   R+G++ HA   K+L  +  
Sbjct: 323 LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LED 380

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  +  ++I+MYAK G +  + +VF+ +   KSTA+W++MI GY                
Sbjct: 381 DAFIACSLIDMYAKNGSITQSSKVFNGL-KEKSTASWNAMIMGYG--------------- 424

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                      I G ++     +A++LF +M+  G +PD++T + VL AC   G +  G 
Sbjct: 425 -----------IHGLAK-----EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGL 468

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           R   Q   +     N+     VIDM  + G +D AL V  +       V ++ S++S   
Sbjct: 469 RYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCR 528

Query: 426 QHG---LGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            H    +GE   A   E+E    KP+    ++ L A
Sbjct: 529 IHQNLEMGEKVAAKLFELEPE--KPENYVLLSNLYA 562



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGK-MESLG---IHPDEVTMVAVLRACVGLGALDF 363
           R+ VSW +MI  +S  G   ++  L G+ ME  G     PD  T+V VL  C     +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H   ++ +   + + L  A++DMY+KCG I  A  +F K+  N   VS +N+++ G
Sbjct: 61  GKGVHGWAVK-LRLDKELVLNNALMDMYSKCGCITNAQMIF-KMNNNKNVVS-WNTMVGG 117

Query: 424 LAQHGLGETSIAVFREMELMG--LKPDGVTFVTVLCACSH 461
            +  G    +  V R+M   G  +K D VT +  +  C H
Sbjct: 118 FSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/640 (36%), Positives = 351/640 (54%), Gaps = 52/640 (8%)

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           S  +SP ++  L      +G +S        +L  C  +  FK   Q+H HI+K GL +D
Sbjct: 14  SLPNSPPQSSELNAKFNEQGWLS--------LLKRCKSMEEFK---QVHAHILKLGLFYD 62

Query: 144 LFIRNALIHFYSI--FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            F  + L+   ++  +G +  A  +F          YNT+I G     +   AL L+ +M
Sbjct: 63  SFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEM 122

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
            +  I+PD FT+  +  AC+ L   + G Q HA V+K    +  ++ ++  +I+MY KCG
Sbjct: 123 LERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFK--AGLEVDVFVQNGLISMYGKCG 180

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                                            IE A  +F+QMD++ + SW+++I  ++
Sbjct: 181 --------------------------------AIEHAGVVFEQMDEKSVASWSSIIGAHA 208

Query: 322 QVGGFSQALELFGKMESLGIH-PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            V  + + L L G M   G H  +E  +V+ L AC  LG+ + G+ +H   + N+    N
Sbjct: 209 SVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNIS-ELN 267

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + + T++IDMY KCGS++  L VF  +    K    +  +I+GLA HG G  ++ VF +M
Sbjct: 268 VVVKTSLIDMYVKCGSLEKGLCVFQNMAH--KNRYSYTVMIAGLAIHGRGREAVRVFSDM 325

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGR 499
              GL PD V +V VL ACSH GLV EG Q F  M   + IKP ++HYGCMVDL+ R G 
Sbjct: 326 LEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGM 385

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           L EAY LI+SMP   N V+WR+LL+AC++H N +IGEIA + +  L   +   Y++L+NM
Sbjct: 386 LKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANM 445

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A   +W    ++R  M +  + + PG+S +E N  +++F++  KS P  + I  M++ M
Sbjct: 446 YARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQM 505

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             +LK  GY P+  QV+ DVDE+EK   + +HS+KLA+AF LI +     IRI++NLR+C
Sbjct: 506 EWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMC 565

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH   K +S IY REI VRD  RFH FK G CSC D+W
Sbjct: 566 NDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 210/418 (50%), Gaps = 39/418 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L+LL+ CKS+++  Q+H  I+  GL +     S L++  ALS   +  +   I FSQI+ 
Sbjct: 35  LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSI-FSQIEE 93

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P  F +NT++RG   S   +EAL+LY  ML +GI  P+NFT+PFVL +C+ L + K G Q
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGI-EPDNFTYPFVLKACSLLVALKEGVQ 152

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           IH H+ K GLE D+F++N LI  Y   G I +A  VFE    + + S++++I  +A V+ 
Sbjct: 153 IHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEM 212

Query: 191 PCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               L L   M  +   + +    V+  SACT L  P +G+  H ++ +N+  +  N+++
Sbjct: 213 WHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISEL--NVVV 270

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           KT++I+MY KCG                                 +E+   +F  M  ++
Sbjct: 271 KTSLIDMYVKCG--------------------------------SLEKGLCVFQNMAHKN 298

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
             S+T MI+G +  G   +A+ +F  M   G+ PD+V  V VL AC   G ++ G +   
Sbjct: 299 RYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFN 358

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           +     +    I     ++D+  + G +  A  +   +P     V ++ S++S    H
Sbjct: 359 RMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDV-VWRSLLSACKVH 415


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/627 (37%), Positives = 364/627 (58%), Gaps = 27/627 (4%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEF---DLFIRNALIHFYSIFGYINNAHKVFE 168
           F  +L SCAR SS  +G ++H  I+  GL     + F+ NAL H Y+  G  ++A  +F 
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77

Query: 169 --GSLARDLVSYNTLINGYAQ-VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225
                 +D+  + TL+    Q   +P    + F++M+   +  D    +++F  CT + D
Sbjct: 78  QIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVED 137

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
             +G+Q    + K +G +G  + +  A++NMY KCGL+    RVF  M   ++  +WS++
Sbjct: 138 LGMGRQAQGCLVK-MG-LGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMN-ERNVVSWSTL 194

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME---SLGIH 342
           + G  +   +E  R +FD+M +R+ V WT MI+GY   G   +   L  +M     LG+ 
Sbjct: 195 LEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGL- 253

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            + VT+ ++L AC   G +  G+ +H   ++ +    +I + TA++DMYAKCG ID A  
Sbjct: 254 -NFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFK 312

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  +PK  + V  +N+++ GLA HG G+  + +F +M +   KPD +TF+ VL ACSH 
Sbjct: 313 VFKYLPK--RNVVAWNAMLGGLAMHGRGKFVLDIFPKM-IEEAKPDDLTFMAVLSACSHS 369

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLV++G  +F S+ + YG  P++EHY CMVD+L R G L+EA  LI+ MP   N V+  +
Sbjct: 370 GLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGS 429

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL +C  H   ++GE   Q+L+ ++  +  ++VLLSNM     + ++A  +R+++   GI
Sbjct: 430 LLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGI 489

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K PG S I   G +H+F A  KSHP TKEI   L +M  +L+ AGYVPNT   VF   +
Sbjct: 490 RKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSD 549

Query: 642 ---------EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
                    EEKE  +  HSEKLA+ FG I+++    + I KNLRIC DCH A K++S+I
Sbjct: 550 GREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKI 609

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
           Y REI++RD  RFH FK G+CSC D+W
Sbjct: 610 YNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 17/317 (5%)

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
           G+   R++F ++   N   W  ++ GY  +   +E  +L   M+ +  +  N  T   +L
Sbjct: 203 GVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSIL 262

Query: 117 NSCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           ++CA+      G  +H + +K  G E  + +  AL+  Y+  G I+ A KVF+    R++
Sbjct: 263 SACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNV 322

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           V++N ++ G A        L +F KM +   +PD  TF+A+ SAC+       G  +   
Sbjct: 323 VAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRS 381

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           +    G     +     ++++  + G +  A  +   M M  +     S++      GK+
Sbjct: 382 LESEYGTT-PKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKL 440

Query: 296 ---ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
              ER  Q   QMD  +      + + Y   G   +A  L   ++S GI           
Sbjct: 441 QLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGI----------- 489

Query: 353 RACVGLGALDFGKRLHQ 369
           R   G+ ++  G  +HQ
Sbjct: 490 RKVPGVSSIYVGGNIHQ 506


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 360/589 (61%), Gaps = 14/589 (2%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHI---SSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           +++S  S+K   + H  ++ +  +HH    S S +I  +ALS  ++ L ++   F QI  
Sbjct: 63  IIKSGFSIKSIKEQHAHLIRT--HHHKNPKSMSNVIKSYALS--RSHLNKANFAFIQIGQ 118

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P + I+N L+RG S+S++P EA+V+Y+ ++    +  +N TF ++  +C+R+     G  
Sbjct: 119 PTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQV 178

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
            H  ++K G    LFI N+LI  Y  FG +  A KVF+    RDLVS+N+LI GY+Q   
Sbjct: 179 FHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNR 238

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
               L LF  M+++ +  D+ T V +  AC+ L +  +      V Y     V  ++ L 
Sbjct: 239 FKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSM--VKYIEDKHVDIDVYLG 296

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
            ++I+MY + GL+++A RVF  M   K+  +W++M++GY   G +  A++LF++M  R++
Sbjct: 297 NSLIDMYGRRGLVDLARRVFDRM-QEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNV 355

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           +SWT MISG +Q    S AL+LF +M    + PDE+T+ +VL AC  LG LD G+ +H+ 
Sbjct: 356 ISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHE- 414

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y+       ++++  A+IDMY KCG +D AL VF+ + K   +VS + S+I GLA +G  
Sbjct: 415 YMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKK-DSVS-WTSMILGLAVNGFV 472

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
           +    +F +M   GL+P   +F+ +L AC+H GLV++G ++FESM + YG++P+M+HYGC
Sbjct: 473 DNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGC 532

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           +VDLL+R G LD AY  I+ MP   + V+WR LL+AC+LHRN  + EIA  KLL+L+P +
Sbjct: 533 VVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSN 592

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
             +YVLLSN  A + RW++A ++R LM    +QKP  WS IE  G  ++
Sbjct: 593 SGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEVIGATNK 641


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/718 (33%), Positives = 404/718 (56%), Gaps = 47/718 (6%)

Query: 9   SSLLALLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRIL 64
           ++L+ +L  C   + +     +HG  V   L+   + ++ L+  ++  GC   +  ++++
Sbjct: 293 ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGC---ITNAQMI 349

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLS 123
           F   +N N+  WNT++ G+S          +   ML+ G  V  +  T    +  C   S
Sbjct: 350 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHES 409

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
              S  ++HC+ +K    ++  + NA +  Y+  G ++ A +VF G  ++ + S+N LI 
Sbjct: 410 FLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 469

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ  +P  +L    +M+ S + PD+FT  ++ SAC++L   R+GK+ H  + +N   +
Sbjct: 470 GHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW--L 527

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ +  +V+++Y  CG                                ++   + LFD
Sbjct: 528 ERDLFVYLSVLSLYIHCG--------------------------------ELCTVQALFD 555

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M+ + LVSW  +I+GY Q G   +AL +F +M   GI    ++M+ V  AC  L +L  
Sbjct: 556 AMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRL 615

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+  H   +++++   + F+  ++IDMYAK GSI  +  VF  + +  K+ + +N++I G
Sbjct: 616 GREAHAYALKHLL-EDDAFIACSLIDMYAKNGSITQSSKVFNGLKE--KSTASWNAMIMG 672

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
              HGL + +I +F EM+  G  PD +TF+ VL AC+H GL+ EG ++ + M + +G+KP
Sbjct: 673 YGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKP 732

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLI-QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
            ++HY C++D+L R G+LD+A  ++ + M  +A+  IW++LL++CR+H+N ++GE    K
Sbjct: 733 NLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAK 792

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L +LEP+   +YVLLSN+ A   +WE+ R+VR+ M++  ++K  G S+IE N  +  F+ 
Sbjct: 793 LFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVV 852

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
            ++     +EI+ +   + MK+   GY P+T+ V  D+ EEEK   +  HSEKLAL +GL
Sbjct: 853 GERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGL 912

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I +    TIR+ KNLRIC DCH A KL+S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 913 IKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/595 (23%), Positives = 277/595 (46%), Gaps = 92/595 (15%)

Query: 19  KSLKQALQIHGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
           K ++   +IH Q+V       N  +  +++I+ +A+ G  +    SR +F  + + N+F 
Sbjct: 98  KDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDD---SRFVFDALRSKNLFQ 153

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           WN ++  YSR++   E L  +  M+S   + P++FT+P V+ +CA +S    G  +H  +
Sbjct: 154 WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLV 213

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
           +K GL  D+F+ NAL+ FY   G++ +A ++F+    R+LVS+N++I  ++       + 
Sbjct: 214 VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESF 273

Query: 196 WLFRKMQ----DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
            L  +M     D    PD  T V +   C    +  +GK  H    K    +   ++L  
Sbjct: 274 LLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLR--LDKELVLNN 331

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM------ 305
           A+++MY+KCG +  A+ +F  M  +K+  +W++M+ G++ EG       +  QM      
Sbjct: 332 ALMDMYSKCGCITNAQMIFK-MNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 390

Query: 306 ---DQ---------------------------------RDLVSWTAMISGYSQVGGFSQA 329
              D+                                  +LV+  A ++ Y++ G  S A
Sbjct: 391 VKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVA-NAFVASYAKCGSLSYA 449

Query: 330 LELFGKMES---------LGIH----------------------PDEVTMVAVLRACVGL 358
             +F  + S         +G H                      PD  T+ ++L AC  L
Sbjct: 450 QRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL 509

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            +L  GK +H   I N +  R++F+  +V+ +Y  CG + T  ++F  +    K++  +N
Sbjct: 510 KSLRLGKEVHGFIIRNWL-ERDLFVYLSVLSLYIHCGELCTVQALFDAMED--KSLVSWN 566

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
           ++I+G  Q+G  + ++ VFR+M L G++  G++ + V  ACS    +  G++     L +
Sbjct: 567 TVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH 626

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            ++        ++D+ A++G + ++  +   +  + ++  W A++    +H  AK
Sbjct: 627 LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAK 680



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 224/456 (49%), Gaps = 55/456 (12%)

Query: 8   HSSLLALLES--CKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           H S L  L+   C SLKQ   ++ ++V         ++  ++ +A  G    L  ++ +F
Sbjct: 407 HESFLPSLKELHCYSLKQEF-VYNELV---------ANAFVASYAKCG---SLSYAQRVF 453

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             I +  +  WN L+ G+++S+ P+ +L  +  M   G++ P++FT   +L++C++L S 
Sbjct: 454 HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL-PDSFTVCSLLSACSKLKSL 512

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G ++H  II+  LE DLF+  +++  Y   G +     +F+    + LVS+NT+I GY
Sbjct: 513 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 572

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q   P  AL +FR+M    IQ    + + +F AC+ L   R+G++ HA   K+L  +  
Sbjct: 573 LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LED 630

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           +  +  ++I+MYAK G +  + +VF+ +   KSTA+W++MI GY                
Sbjct: 631 DAFIACSLIDMYAKNGSITQSSKVFNGL-KEKSTASWNAMIMGYG--------------- 674

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                      I G ++     +A++LF +M+  G +PD++T + VL AC   G +  G 
Sbjct: 675 -----------IHGLAK-----EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGL 718

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           R   Q   +     N+     VIDM  + G +D AL V  +       V ++ S++S   
Sbjct: 719 RYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCR 778

Query: 426 QHG---LGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            H    +GE   A   E+E    KP+    ++ L A
Sbjct: 779 IHQNLEMGEKVAAKLFELE--PEKPENYVLLSNLYA 812


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/552 (40%), Positives = 341/552 (61%), Gaps = 10/552 (1%)

Query: 41  SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
           S S++I  +ALS     L ++  +F+QI  P + +WN ++ G S+SD P +A+  Y +M 
Sbjct: 7   SISEVIKHYALS--PQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMY 64

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
            KGI   ++ TF F+  SCAR+S  + G  +  H +K G E   F+ NALIH Y  FG +
Sbjct: 65  YKGI-QGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGEL 123

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
             A KVF+G L RD+VS+N++I GY Q       L LFR+MQ   ++ D+ T +   SA 
Sbjct: 124 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISAT 183

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L++  +G   + V Y +   V  ++ L   +I+MY + G+++ A RVF  M   K+  
Sbjct: 184 CFLSEWEMGD--YLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK-EKNIV 240

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           +W++MI GY + G +  A++LF++M  RD++SWT+MI GYS     ++A++LF +M    
Sbjct: 241 SWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSM 300

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PDE+T+   L AC  LG+LD G+ +H  YI       ++F+  ++IDMY KCG ++ A
Sbjct: 301 VKPDEITVATALSACAHLGSLDAGEAVHD-YIRKHDIKSDVFVGNSLIDMYCKCGVVEKA 359

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
           L VF  + K   +VS + SIISGLA +G  E+++ VF +M   G+ P   TFV VL AC+
Sbjct: 360 LQVFNDM-KTRDSVS-WTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACA 417

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLV++G + F+SM N Y + P+M+HYGC+VDLL R G LD AY  I+ MP   + VIW
Sbjct: 418 HVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIW 477

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
           R LL+AC+LH N  + EI  +KLL L+P +  +YVL S+  A + RW++  ++RKLM+ +
Sbjct: 478 RILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVT 537

Query: 580 GIQKPPGWSYIE 591
            +QKP  +S IE
Sbjct: 538 NLQKPCAYSSIE 549


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 355/636 (55%), Gaps = 45/636 (7%)

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
           R D P    VL  SM  +G+ + ++ T+  ++  C    + + G ++H HI   G     
Sbjct: 263 RRDLPSAMHVL-DSMERRGVWA-DSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKT 320

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           F+ N LI+ Y  F  +  A  +F+    R++VS+ T+I+ Y+  +    A+ L   M   
Sbjct: 321 FLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRD 380

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN 264
            + P+ FTF ++  AC  L D    KQ H+ + K                          
Sbjct: 381 GVMPNMFTFSSVLRACERLYDL---KQLHSWIMK-------------------------- 411

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
                   +G+       S++I  Y++ G++  A ++F +M   D V W ++I+ ++Q  
Sbjct: 412 --------VGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHS 463

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +AL L+  M  +G   D+ T+ +VLRAC  L  L+ G++ H   ++   F +++ L 
Sbjct: 464 DGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK---FDQDLILN 520

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A++DMY KCGS++ A  +F ++ K  K V  ++++I+GLAQ+G    ++ +F  M++ G
Sbjct: 521 NALLDMYCKCGSLEDAKFIFNRMAK--KDVISWSTMIAGLAQNGFSMEALNLFESMKVQG 578

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
            KP+ +T + VL ACSH GLV EG  +F SM N YGI P  EHYGCM+DLL R  +LD+ 
Sbjct: 579 PKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDM 638

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
             LI  M  + + V WR LL ACR  +N  +   A +++L L+P     YVLLSN+ A +
Sbjct: 639 VKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAIS 698

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RW +  +VR+ M   GI+K PG S+IE N  +H F+   KSHPQ  EI   L     +L
Sbjct: 699 KRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRL 758

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
             AGYVP+T  V+ D++ E++E  + YHSEKLA+ FG+++   ++TIRI KNL+ICGDCH
Sbjct: 759 AGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCH 818

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              KL++E+ +R I++RD IR+H F+ G CSC D+W
Sbjct: 819 KFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 153/310 (49%), Gaps = 42/310 (13%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
           N L  +++LF ++   N+  W T++  YS +     A+ L   M   G++ PN FTF  V
Sbjct: 334 NLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVM-PNMFTFSSV 392

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L +C RL   K   Q+H  I+K GLE D+F+R+ALI  YS  G +  A KVF   +  D 
Sbjct: 393 LRACERLYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDS 449

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           V +N++I  +AQ  +   AL L++ M+      D  T  ++  ACT L+   +G+Q H  
Sbjct: 450 VVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVH 509

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           V K       +++L  A+++MY KCG +  A+ +F+ M   K   +WS+MI+G  +    
Sbjct: 510 VLK----FDQDLILNNALLDMYCKCGSLEDAKFIFNRMA-KKDVISWSTMIAGLAQ---- 560

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRA 354
                                        GFS +AL LF  M+  G  P+ +T++ VL A
Sbjct: 561 ----------------------------NGFSMEALNLFESMKVQGPKPNHITILGVLFA 592

Query: 355 CVGLGALDFG 364
           C   G ++ G
Sbjct: 593 CSHAGLVNEG 602


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 242/599 (40%), Positives = 341/599 (56%), Gaps = 56/599 (9%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL-------ARDLVSYNTLI 182
           Q H  I++ G   D +I  +L+  Y+      N +  FE SL         ++  +N +I
Sbjct: 73  QAHALILRTGHLQDSYIAGSLVKSYANVS--TNRYLSFESSLRVFDFVRKPNVFLWNCMI 130

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
               +  EP  A+ L+ +M  +  +P+ +T+ A+  AC++      G Q HA + K+ G 
Sbjct: 131 KVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH-GL 189

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
            G   +L +A I MYA  G +                               +E  R L 
Sbjct: 190 GGDGHILSSA-IRMYASFGRL-------------------------------VEARRILD 217

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+  + D V          + G F +ALE+F +M+   I P +  + +VL AC  LGALD
Sbjct: 218 DKGGEVDAVCMP------DRKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 271

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G+ +H     N +    + L T+++DMYAKCG ID A  VF K+    K VS +N++I 
Sbjct: 272 QGRWIHTYAKRNSIQLDGV-LGTSLVDMYAKCGRIDLAWEVFEKMSN--KEVSSWNAMIG 328

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
           GLA HG  E +I +F +M++    P+ +TFV VL AC+HGGLV++G   F SM   YG++
Sbjct: 329 GLAMHGRAEDAIDLFSKMDI---NPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 385

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           PQ+EHYGC+VDLL R G L EA  ++ S+P +    +W ALL ACR H N ++GE  G+ 
Sbjct: 386 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 445

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE-HNGTLHRFL 600
           LL+LEP +   Y LLSN+ A+  RWEE  +VRKLM + GI+  PG S I+   G +H+F+
Sbjct: 446 LLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFI 505

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
               SHPQ K+I  ML  +  +L+  GY P+  QV+FD+DEEEKET V  HSEKLA+ FG
Sbjct: 506 IGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFG 565

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LIN+    TIRI KNLR+C DCH A KL+S++Y REI+VRD IR+H F+ G CSC DFW
Sbjct: 566 LINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 202/445 (45%), Gaps = 54/445 (12%)

Query: 6   LEHSSLLALLES--CKSLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRS 61
           L H ++L LL +    SL    Q H  I+ +G   + +I+ S + S+  +S  +   F S
Sbjct: 51  LSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFES 110

Query: 62  RI-LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            + +F  +  PN+F+WN +++    ++ P +A++LY  M+      PN +T+P VL +C+
Sbjct: 111 SLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHF-RPNKYTYPAVLKACS 169

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-DLVSYN 179
                  G Q+H H++K GL  D  I ++ I  Y+ FG +  A ++ +      D V   
Sbjct: 170 DAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMP 229

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
                + +      AL +F +MQ   I+P  F   ++ SAC  L     G+  H    +N
Sbjct: 230 DRKGCFME------ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRN 283

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              +  + +L T++++MYAKCG +++A  VF  M  +K  ++W++MI G    G+ E A 
Sbjct: 284 --SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAI 340

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            LF +MD                                  I+P+E+T V VL AC   G
Sbjct: 341 DLFSKMD----------------------------------INPNEITFVGVLNACAHGG 366

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            +  G  +     +       I     ++D+  + G +  A  V   IP    T +++ +
Sbjct: 367 LVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE-PTPAVWGA 425

Query: 420 IISGLAQHG---LGETSIAVFREME 441
           ++    +HG   LGE    +  E+E
Sbjct: 426 LLGACRKHGNVELGERVGKILLELE 450



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 158/337 (46%), Gaps = 22/337 (6%)

Query: 13  ALLESCKS---LKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           A+L++C     + + +Q+H  +V  GL  + HI SS  I  +A  G    L  +R +   
Sbjct: 163 AVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSA-IRMYASFG---RLVEARRI--- 215

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +D+    +    M    R     EAL ++  M  K  + P  F  P VL++CA L +   
Sbjct: 216 LDDKGGEVDAVCMP--DRKGCFMEALEIFHQM-QKEKIRPRKFVLPSVLSACANLGALDQ 272

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH +  +  ++ D  +  +L+  Y+  G I+ A +VFE    +++ S+N +I G A 
Sbjct: 273 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 332

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF KM    I P+  TFV + +AC      + G      + K  G V   +
Sbjct: 333 HGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG-VEPQI 388

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI---ERARQLFDQ 304
                ++++  + GL+  AE+V S++    + A W +++    + G +   ER  ++  +
Sbjct: 389 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 448

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           ++ ++   +T + + Y++ G + +  E+   M+  GI
Sbjct: 449 LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 485


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/659 (35%), Positives = 381/659 (57%), Gaps = 32/659 (4%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++  WNT++    +    +EA+ +   M++ G V P+  TF   L +C+RL     G ++
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALG-VRPDGVTFASALPACSRLELLGVGREV 282

Query: 132 HCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLINGYAQ- 187
           H  ++K   L  + F+ +AL+  Y+    +++A +VF+      R L  +N +I GYAQ 
Sbjct: 283 HAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQH 342

Query: 188 --VKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYKNLGCV 243
             + E   A+ LF +M+ ++   P   T   +  AC   ++   GK+  H  V K    +
Sbjct: 343 GGMDEE--AIELFSRMEAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRD--M 397

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            SN  ++ A+++MYA+ G M+ A  +F+ + + +   +W+++I+G   +G I  A QL  
Sbjct: 398 ASNRFVQNALMDMYARLGRMDEAHTIFAMIDL-RDIVSWNTLITGCIVQGLISEAFQLVR 456

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M    L S  A  SG + + G   +++    M      P+ +T++ +L  C  L A   
Sbjct: 457 EMQ---LPSSAA--SGETMLEGDDTSVDGQRCM------PNNITLMTLLPGCAVLAAPAR 505

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H   + + +   ++ + +A++DMYAKCG +  A +VF ++P+  + V  +N +I  
Sbjct: 506 GKEIHGYAVRHALES-DLAVGSALVDMYAKCGCLALARAVFDRLPR--RNVITWNVLIMA 562

Query: 424 LAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
              HGLG+ ++A+F  M   G   P+ VTF+  L ACSH GLV+ G + F+ M  +YG +
Sbjct: 563 YGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFE 622

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
           P    + C+VD+L R GRLDEAYG+I SM P +     W  +L ACRLHRN K+G IA +
Sbjct: 623 PTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAE 682

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           +L +LEPD  +HYVLL N+ +    WE + +VR +M   G+ K PG S+IE +G +HRF+
Sbjct: 683 RLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFM 742

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A + +HP++ ++   +  +  +++  GYVP+T  V+ DVDE EK  ++ YHSEKLA+AFG
Sbjct: 743 AGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFG 802

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+ +    TIR+ KNLR+C DCH A K +S +  REI++RD  RFH F+ G CSC D+W
Sbjct: 803 LLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 138/558 (24%), Positives = 245/558 (43%), Gaps = 73/558 (13%)

Query: 7   EHSSLLALLESCKSLKQALQ---IHGQIVHSGLNHHIS---SSQLISFFALSGCKNGLFR 60
           +H +L   ++S  +L+ +     IHG  +   L H  +   S+ L++ +A  G       
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCG-DLDAAL 105

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +    +  D  +   +N+L+           AL     ML+   VS  +FT   VL +C+
Sbjct: 106 ALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVS--SFTLVSVLLACS 163

Query: 121 RLSS--FKSGCQIHCHIIKFGL---EFDLFIRNALIHFYSIFGYINNAHKVF--EGSLAR 173
            L+    + G + H   +K G      + F  NAL+  Y+  G +++A ++F   G+   
Sbjct: 164 HLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVG 223

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           DLV++NT+I+   Q      A+ +   M    ++PD  TF +   AC+ L    +G++ H
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVH 283

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG-MSKSTAAWSSMISGYTRE 292
           A V K+   + +N  + +A+++MYA    ++ A RVF  +    +    W++MI GY + 
Sbjct: 284 AFVLKDDD-LAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQH 342

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAV 351
           G           MD+                    +A+ELF +ME+  G  P E TM  V
Sbjct: 343 GG----------MDE--------------------EAIELFSRMEAEAGCAPSETTMAGV 372

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC     +  GK     Y+       N F+  A++DMYA+ G +D A ++F  I  +L
Sbjct: 373 LPACA-RSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMI--DL 429

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMG--------------------LKPDGVT 451
           + +  +N++I+G    GL   +  + REM+L                        P+ +T
Sbjct: 430 RDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNIT 489

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
            +T+L  C+       GK+     + + ++  +     +VD+ A+ G L  A  +   +P
Sbjct: 490 LMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLP 549

Query: 512 YDANSVIWRALLAACRLH 529
              N + W  L+ A  +H
Sbjct: 550 RR-NVITWNVLIMAYGMH 566



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 2   KRLVLEHSSLLALLESCKSLK---QALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG 57
           +R +  + +L+ LL  C  L    +  +IHG  V   L   ++  S L+  +A  GC   
Sbjct: 481 QRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGC--- 537

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  +R +F ++   N+  WN L+  Y       EAL L+  M++ G  +PN  TF   L 
Sbjct: 538 LALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALA 597

Query: 118 SCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           +C+       G ++   + + +G E   ++   ++      G ++ A+ + 
Sbjct: 598 ACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGII 648


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/686 (34%), Positives = 367/686 (53%), Gaps = 68/686 (9%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++ + +   WN L+ GYS S     A+  Y +M+     +    T   +L   +    
Sbjct: 92  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGH 151

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL--- 181
              G QIH  +IK G E  L + + L+  YS  G I++A KVF G   R+ V YNTL   
Sbjct: 152 VSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGG 211

Query: 182 ---------------------------INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
                                      I G AQ      A+  FR+M+   ++ D + F 
Sbjct: 212 LLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFG 271

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           ++  AC  L     G+Q HA + +    +  ++ + +A+I+MY KC  ++ A+ VF    
Sbjct: 272 SVLPACGGLGAINDGRQIHACIIRT--NLQDHIYVGSALIDMYCKCKCLHYAKTVF---- 325

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
                                       D+M Q+++VSWTAM+ GY Q G   +A+++F 
Sbjct: 326 ----------------------------DRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFL 357

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
            M+  GI PD  T+   + AC  + +L+ G + H + I   +    I ++ +++ +Y KC
Sbjct: 358 DMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLI-HYITVSNSLVTLYGKC 416

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G ID +  +F ++  N++    + +++S  AQ G    +I +F +M  +GLKPDGVT   
Sbjct: 417 GDIDDSTRLFNEM--NVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTG 474

Query: 455 VLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           V+ ACS  GLVE+G+++FE M+N YGI P   HY CM+DL +R GR++EA G I  MP+ 
Sbjct: 475 VISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFR 534

Query: 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573
            +++ W  LL+ACR   N +IG+ A + L++L+P H A Y LLS++ A   +W+   Q+R
Sbjct: 535 PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLR 594

Query: 574 KLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
           + M +  ++K PG S+I+  G LH F A  +S P + +I   L+++  K+   GY P+T 
Sbjct: 595 RGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTS 654

Query: 634 QVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIY 693
            V  DV+E  K  +++ HSE+LA+AFGLI   S   IR+ KNLR+C DCH A K +S + 
Sbjct: 655 FVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVT 714

Query: 694 RREIMVRDAIRFHLFKKGNCSCMDFW 719
            REI+VRDA+RFH FK G CSC DFW
Sbjct: 715 GREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 215/442 (48%), Gaps = 40/442 (9%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF------------------ 157
           +  C  L + +    IH +II+     + F+ N ++H Y++                   
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 158 -------------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK-MQD 203
                        G+++   + FE    RD V++N LI GY+       A+  +   M+D
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD 129

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
                   T + M    +      +GKQ H  V K LG   S +L+ + +++MY+K G +
Sbjct: 130 FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIK-LG-FESYLLVGSPLLDMYSKVGCI 187

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
           + A++VF  +   ++T  +++++ G    G IE A QLF  M ++D VSW+AMI G +Q 
Sbjct: 188 SDAKKVFYGLD-DRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQN 245

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   +A+E F +M+  G+  D+    +VL AC GLGA++ G+++H   I       +I++
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR-TNLQDHIYV 304

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
            +A+IDMY KC  +  A +VF ++ +  K V  + +++ G  Q G    ++ +F +M+  
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQ--KNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRS 362

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G+ PD  T    + AC++   +EEG QF    +  G+   +     +V L  + G +D++
Sbjct: 363 GIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDS 422

Query: 504 YGLIQSMPYDANSVIWRALLAA 525
             L   M    + V W A+++A
Sbjct: 423 TRLFNEMNV-RDEVSWTAMVSA 443



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/523 (23%), Positives = 220/523 (42%), Gaps = 106/523 (20%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L L  S   +    QIHGQ++  G   + +  S L+  ++  GC   +  ++ +F  +
Sbjct: 141 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGC---ISDAKKVFYGL 197

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSM---------LSKGIVSP------------ 107
           D+ N  ++NTLM G       ++AL L+  M         + KG+               
Sbjct: 198 DDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFRE 257

Query: 108 --------NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
                   + + F  VL +C  L +   G QIH  II+  L+  +++ +ALI  Y     
Sbjct: 258 MKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKC 317

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           ++ A  VF+    +++VS+  ++ GY Q      A+ +F  MQ S I PD +T     SA
Sbjct: 318 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISA 377

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C  ++    G QFH       G +   + +  +++ +Y KCG ++ + R+F+ M + +  
Sbjct: 378 CANISSLEEGSQFHGKAI-TAGLI-HYITVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDE 434

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            +W++M+S Y + G+   A QLFD+M Q                               L
Sbjct: 435 VSWTAMVSAYAQFGRAVEAIQLFDKMVQ-------------------------------L 463

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           G+ PD VT+  V+ AC   G ++ G+R  +  I       +    + +ID++++ G I+ 
Sbjct: 464 GLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEE 523

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A+     +P                                     +PD + + T+L AC
Sbjct: 524 AMGFINGMP------------------------------------FRPDAIGWTTLLSAC 547

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEH-YGCMVDLLARDGRLD 501
            + G +E GK   ES++   + P     Y  +  + A  G+ D
Sbjct: 548 RNKGNLEIGKWAAESLIE--LDPHHPAGYTLLSSIYASKGKWD 588



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 157/336 (46%), Gaps = 12/336 (3%)

Query: 4   LVLEHSSLLALLESCKSL---KQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           L ++     ++L +C  L       QIH  I+ + L  HI   S LI  +    C   L 
Sbjct: 263 LKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKC---LH 319

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            ++ +F ++   N+  W  ++ GY ++    EA+ ++  M   GI  P+++T    +++C
Sbjct: 320 YAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI-DPDHYTLGQAISAC 378

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A +SS + G Q H   I  GL   + + N+L+  Y   G I+++ ++F     RD VS+ 
Sbjct: 379 ANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWT 438

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +++ YAQ      A+ LF KM    ++PD  T   + SAC+       G+++  ++   
Sbjct: 439 AMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINE 498

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE--- 296
            G V SN    + +I+++++ G +  A    + M        W++++S    +G +E   
Sbjct: 499 YGIVPSNGHY-SCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGK 557

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
            A +   ++D      +T + S Y+  G +    +L
Sbjct: 558 WAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQL 593



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 164/373 (43%), Gaps = 46/373 (12%)

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           + A    C  L   R  K  H  + + L        L   +++ YA       A RVF  
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTL--PHPETFLHNNIVHAYALIRSSIYARRVFDG 63

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           +    +  +W++++  Y++ G +    + F+++  RD V+W  +I GYS  G    A++ 
Sbjct: 64  IP-QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 122

Query: 333 FGK-MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           +   M+    +   VT++ +L+     G +  GK++H Q I+ + F   + + + ++DMY
Sbjct: 123 YNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIK-LGFESYLLVGSPLLDMY 181

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSI------------------------------I 421
           +K G I  A  VFY +    +   ++N++                              I
Sbjct: 182 SKVGCISDAKKVFYGLDD--RNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMI 239

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
            GLAQ+G+ + +I  FREM++ GLK D   F +VL AC   G + +G+Q    ++   ++
Sbjct: 240 KGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQ 299

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
             +     ++D+  +   L  A  +   M    N V W A++      +  + GE A + 
Sbjct: 300 DHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVG--YGQTGRAGE-AVKI 355

Query: 542 LLDL-----EPDH 549
            LD+     +PDH
Sbjct: 356 FLDMQRSGIDPDH 368


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/500 (42%), Positives = 317/500 (63%), Gaps = 41/500 (8%)

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           + D R+G+  H+VV ++    GS + ++ +++++YA CG                     
Sbjct: 1   MADVRLGETIHSVVIRS--GFGSLIYVQNSLLHLYANCG--------------------- 37

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       +  A ++FD+M ++DLV+W ++I+G+++ G   +AL L+ +M S GI 
Sbjct: 38  -----------DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           PD  T+V++L AC  +GAL  GKR+H  Y+  V   RN+  +  ++D+YA+CG ++ A +
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHV-YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKT 145

Query: 403 VFYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME-LMGLKPDGVTFVTVLCACS 460
           +F + + KN  +VS + S+I GLA +G G+ +I +F+ ME   GL P  +TFV +L ACS
Sbjct: 146 LFDEMVDKN--SVS-WTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 202

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H G+V+EG ++F  M   Y I+P++EH+GCMVDLLAR G++ +AY  I+SMP   N VIW
Sbjct: 203 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 262

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
           R LL AC +H ++ + E A  ++L LEP+H   YVLLSNM A   RW + +++RK M   
Sbjct: 263 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 322

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV 639
           G++K PG S +E    +H FL   KSHPQ+  I   LK+MT +L+S GYVP    V  DV
Sbjct: 323 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 382

Query: 640 DEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMV 699
           +EEEKE  V YHSEK+A+AF LI++  +  I + KNLR+C DCHLA KL+S++Y REI+V
Sbjct: 383 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 442

Query: 700 RDAIRFHLFKKGNCSCMDFW 719
           RD  RFH FK G+CSC D+W
Sbjct: 443 RDRSRFHHFKNGSCSCQDYW 462



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 174/336 (51%), Gaps = 54/336 (16%)

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           ++  + G  IH  +I+ G    ++++N+L+H Y+  G + +A+KVF+    +DLV++N++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           ING+A+  +P  AL L+ +M    I+PD FT V++ SAC ++    +GK+ H  + K +G
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VG 119

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            +  N+     ++++YA+CG +  A+ +F  M + K++ +W+S+I G             
Sbjct: 120 -LTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLA----------- 166

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGF-SQALELFGKMESL-GIHPDEVTMVAVLRACVGLG 359
                                V GF  +A+ELF  MES  G+ P E+T V +L AC   G
Sbjct: 167 ---------------------VNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCG 205

Query: 360 ALDFG----KRLHQQY-IENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            +  G    +R+ ++Y IE  +  FG        ++D+ A+ G +  A      +P    
Sbjct: 206 MVKEGFEYFRRMREEYKIEPRIEHFG-------CMVDLLARAGQVKKAYEYIKSMPMQ-P 257

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
            V ++ +++     H  G++ +A F  ++++ L+P+
Sbjct: 258 NVVIWRTLLGACTVH--GDSDLAEFARIQILQLEPN 291



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 138/283 (48%), Gaps = 25/283 (8%)

Query: 27  IHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           IH  ++ SG    I   + L+  +A  G     ++   +F ++   ++  WN+++ G++ 
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK---VFDKMPEKDLVAWNSVINGFAE 66

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +  P+EAL LYT M SKGI  P+ FT   +L++CA++ +   G ++H ++IK GL  +L 
Sbjct: 67  NGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS- 204
             N L+  Y+  G +  A  +F+  + ++ VS+ +LI G A       A+ LF+ M+ + 
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 185

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVV---YK------NLGCVGSNMLLKTAVIN 255
            + P   TFV +  AC+     + G ++   +   YK      + GC          +++
Sbjct: 186 GLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC----------MVD 235

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           + A+ G +  A     +M M  +   W +++   T  G  + A
Sbjct: 236 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/595 (37%), Positives = 354/595 (59%), Gaps = 13/595 (2%)

Query: 130 QIHCHIIKFGLEFDLFIRNAL-IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
           ++H  ++K GL  DL    AL +  Y+    + +A + F+ +  RDL  Y+ L+   +  
Sbjct: 22  RVHARLLKEGLA-DLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 189 KEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            +P   L L R+M  D  ++PD F   ++ SA   L   R+G+Q HA  +       ++ 
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHA--HFAASPYSADN 138

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++K+++I+MY KCG+   A +VF ++G+ K++  W+++ISGY   G    A  LF  M  
Sbjct: 139 VVKSSLIDMYCKCGVPQDARKVFDSIGV-KNSVVWTALISGYASNGCTGEALDLFQSMPA 197

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKM--ESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             L +WTA+ISG+ + G ++ A+ LF +M  + + IH D   +  V+     L AL  G+
Sbjct: 198 HGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIH-DAFVLATVIGGAADLAALVLGR 256

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           +LH  ++  + F  ++ +  A++DMY+KC  I +A  VF  I   ++ V  + +I+ G A
Sbjct: 257 QLHG-FVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGI--TVRDVISWTTILVGEA 313

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQM 484
           QHG  E   A++  M L G+KP+ VTFV ++ ACSH GLV++G+Q F+SM   YG+KP +
Sbjct: 314 QHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGV 373

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           +HY C +DLL+R G L EA  LI +MPY+ +   W ALL+AC+ H + ++       LL+
Sbjct: 374 QHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLE 433

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           L P   + Y+LLSN+ A   +W+   +VRK+M +  I+K PG+S++E       F A + 
Sbjct: 434 LRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEV 493

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
                +EI   L+++  +++  GYVP+T  V+ D++E EKE  +  HSE+LA+AFG++ S
Sbjct: 494 PLDVGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKS 553

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                IR+ KNLR+CGDCH   K +S I +R+I+VRDA RFH F+ GNCSC +FW
Sbjct: 554 PPGSVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/461 (21%), Positives = 189/461 (40%), Gaps = 72/461 (15%)

Query: 26  QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           ++H +++  GL    S+  L+       C   L  +R  F      ++ +++ L+   S 
Sbjct: 22  RVHARLLKEGLADLPSAPALLVSAYARSCL--LPDARRAFDDAPRRDLHLYSALLAAVSH 79

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           S  P+  L L   MLS   + P++F    + ++  RL S + G Q+H H        D  
Sbjct: 80  SSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNV 139

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM---- 201
           ++++LI  Y   G   +A KVF+    ++ V +  LI+GYA       AL LF+ M    
Sbjct: 140 VKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHG 199

Query: 202 ----------------------------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
                                       +D     DAF    +     +L    +G+Q H
Sbjct: 200 LFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLH 259

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
             V + LG + S+M++  A+++MY+KC  ++ A  VF  + + +   +W++++ G  + G
Sbjct: 260 GFVMR-LGFL-SSMIVGNALVDMYSKCSDIHSAREVFEGITV-RDVISWTTILVGEAQHG 316

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
           + E                               +   L+ +M   G+ P+EVT V ++ 
Sbjct: 317 RAE-------------------------------EVFALYNRMLLAGMKPNEVTFVGLIY 345

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC   G +  G++L             +   T  +D+ ++ G +  A  +   +P     
Sbjct: 346 ACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDE 405

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFV 453
            + + +++S   +H   +T + +     L+ L+P D  T++
Sbjct: 406 AT-WGALLSACKKH--NDTQMCLRVADNLLELRPKDPSTYI 443



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SSL+ +   C   + A ++   I   G+ + +  + LIS +A +GC         LF  +
Sbjct: 142 SSLIDMYCKCGVPQDARKVFDSI---GVKNSVVWTALISGYASNGCTGEALD---LFQSM 195

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
               +F W  L+ G+ ++ +   A+ L+  M    I   + F    V+   A L++   G
Sbjct: 196 PAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLG 255

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H  +++ G    + + NAL+  YS    I++A +VFEG   RD++S+ T++ G AQ 
Sbjct: 256 RQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQH 315

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                   L+ +M  + ++P+  TFV +  AC+     + G+Q    + +  G +   + 
Sbjct: 316 GRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYG-MKPGVQ 374

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
             T  +++ ++ G ++ AE++ +TM      A W +++S   +    +   ++ D +
Sbjct: 375 HYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNL 431


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/674 (36%), Positives = 367/674 (54%), Gaps = 57/674 (8%)

Query: 64  LFSQIDNPN-------------IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
           ++S++D PN             +  W +L+ G   +     AL+ +++M  +  V PN+F
Sbjct: 52  MYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNM-RRECVLPNDF 110

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TFP V  + A L    +G Q+H   +K G   D+F+  +    YS  G    A  +F+  
Sbjct: 111 TFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEM 170

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             R+L ++N  ++   Q      A+  F+K      +P+A TF A  +AC ++    +G+
Sbjct: 171 PHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGR 230

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGY 289
           Q H  + ++      ++ +   +I+ Y KCG +  +E VFS +G  + +  +W S+++  
Sbjct: 231 QLHGFIVRSR--YREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAAL 288

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            +  + ERA  +F Q  +                                 + P +  + 
Sbjct: 289 VQNHEEERACMVFLQARKE--------------------------------VEPTDFMIS 316

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP- 408
           +VL AC  LG L+ G+ +H   ++  V   NIF+ +A++D+Y KCGSI+ A  VF ++P 
Sbjct: 317 SVLSACAELGGLELGRSVHALALKACV-EENIFVGSALVDLYGKCGSIEYAEQVFREMPE 375

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL--MGLKPDGVTFVTVLCACSHGGLVE 466
           +NL T   +N++I G A  G  + ++++F+EM     G+    VT V+VL ACS  G VE
Sbjct: 376 RNLVT---WNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVE 432

Query: 467 EGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            G Q FESM   YGI+P  EHY C+VDLL R G +D AY  I+ MP      +W ALL A
Sbjct: 433 RGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGA 492

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           C++H   K+G+IA +KL +L+PD   ++V+ SNMLA   RWEEA  VRK M D GI+K  
Sbjct: 493 CKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNV 552

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G+S++     +H F A    H +  EI+ ML  +  ++K AGYVP+    +FD++EEEK 
Sbjct: 553 GYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKA 612

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
           + V YHSEK+ALAFGLI       IRITKNLRIC DCH A K +S+I  REI+VRD  RF
Sbjct: 613 SEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRF 672

Query: 706 HLFKKGNCSCMDFW 719
           H FK G CSC D+W
Sbjct: 673 HRFKDGWCSCKDYW 686


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/708 (33%), Positives = 384/708 (54%), Gaps = 58/708 (8%)

Query: 27  IHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +H  ++ +G +      S L++ +A  G    +  +R +F  +   N+ +W TLM GY +
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGV---MVNARKVFDNLPRRNVVVWTTLMTGYVQ 58

Query: 86  SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
           +  P+ A+ ++  ML  G   P+NFT    LN+C+ L S   G Q H  IIK+ +  D  
Sbjct: 59  NSQPEVAVEVFGDMLESGSF-PSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSS 117

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           I NAL   YS FG ++++ K F  +  +D++S+ T+I+           L LF +M    
Sbjct: 118 IGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFEN 177

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P+ FT  ++ S C+ +    +G Q H++  K LG   SN+ +  +++ +Y KCG    
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTK-LGH-ESNLRITNSLVYLYLKCGC--- 232

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV-- 323
                                        I+ A+ LF++M+ ++L++W AMI+G++Q   
Sbjct: 233 -----------------------------IDEAKNLFNRMEYKNLITWNAMIAGHAQAMD 263

Query: 324 ---GGFS------QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
                FS      +AL ++ K+   G  PD  T+ ++L  C  L AL+ G+++H Q I++
Sbjct: 264 LAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKS 323

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
             F  ++ + TA++DMY KCGSI+ A   F  +    +T+  + S+I+  A+HG  + ++
Sbjct: 324 G-FLSDVVVGTALVDMYDKCGSIERARKAFLDMST--RTLISWTSMITSFARHGQSQHAL 380

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDL 493
            +F +M L G +P+ +TFV VL ACSH G+V+E  ++FE M   Y IKP M+HYGC+VD+
Sbjct: 381 QLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDM 440

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553
             R GRLDEA+ +I+ M  + N  IW  L+A CR H N ++G  A ++LL L+P     Y
Sbjct: 441 FVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETY 500

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           V+L NM     RWE+   VR+LM +  + K   WS I   G +H F  + + H    E+ 
Sbjct: 501 VVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELH 560

Query: 614 LMLKDMTMKLKSAGYVP-NTVQVVFDVDEEEKETVVS---YHSEKLALAFGLINSRSKET 669
            +L D+  + KS GY     ++V+ D +EE +E   S   YHSEKLA+ FGL+N+     
Sbjct: 561 TLLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKAFSSAVYHSEKLAVTFGLLNTPIGAP 620

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           IR+ K++ +C DCH   K++S    R I+++D  R H F  G CSC D
Sbjct: 621 IRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRLHKFVNGQCSCAD 668


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/638 (35%), Positives = 367/638 (57%), Gaps = 46/638 (7%)

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y R D P+ A+    S+ S G+ + ++ T+  ++  C    +   G  I  H+   G   
Sbjct: 38  YQR-DLPR-AMKAMDSLQSHGLWA-DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRP 94

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
            +F+ N LI+ Y  F  +N+AH++F+    R+++S+ T+I+ Y++ K    AL L   M 
Sbjct: 95  MMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLML 154

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
              ++P+ +T+ ++  +C  ++D R+    H  + K    + S++ +++A+I+++AK G 
Sbjct: 155 RDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKE--GLESDVFVRSALIDVFAKLG- 208

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
                                          + E A  +FD+M   D + W ++I G++Q
Sbjct: 209 -------------------------------EPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                 ALELF +M+  G   ++ T+ +VLRAC GL  L+ G + H   +  V + +++ 
Sbjct: 238 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH---VHIVKYDQDLI 294

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L  A++DMY KCGS++ AL VF ++ +  + V  ++++ISGLAQ+G  + ++ +F  M+ 
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKE--RDVITWSTMISGLAQNGYSQEALKLFERMKS 352

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G KP+ +T V VL ACSH GL+E+G  +F SM   YGI P  EHYGCM+DLL + G+LD
Sbjct: 353 SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLD 412

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           +A  L+  M  + ++V WR LL ACR+ RN  + E A +K++ L+P+    Y LLSN+ A
Sbjct: 413 DAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            + +W+   ++R  M D GI+K PG S+IE N  +H F+    SHPQ  E+   L  +  
Sbjct: 473 NSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIH 532

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           +L   GYVP T  V+ D++ E+ E  + +HSEKLALAFGL+    ++ IRI KNLRICGD
Sbjct: 533 RLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGD 592

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH+  KL S++  R I++R  IR+H F+ G CSC D+W
Sbjct: 593 CHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 187/400 (46%), Gaps = 84/400 (21%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF Q+   N+  W T++  YS+    Q+AL L   ML    V PN +T+  VL SC  +S
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN-VRPNVYTYSSVLRSCNGMS 176

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +    +HC IIK GLE D+F+R+ALI  ++  G   +A  VF+  +  D + +N++I 
Sbjct: 177 DVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG 233

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ      AL LF++M+ +    +  T  ++  ACT L    +G Q H  + K     
Sbjct: 234 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----Y 289

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +++L  A+++MY KCG +  A RVF+ M   +    WS+MISG  +            
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQ------------ 336

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                         +GYSQ     +AL+LF +M+S G  P+ +T+V VL AC   G L+ 
Sbjct: 337 --------------NGYSQ-----EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377

Query: 364 G----KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           G    + + + Y  + V  R  +    +ID+  K G +D A             V L N 
Sbjct: 378 GWYYFRSMKKLYGIDPV--REHY--GCMIDLLGKAGKLDDA-------------VKLLN- 419

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
                              EME    +PD VT+ T+L AC
Sbjct: 420 -------------------EME---CEPDAVTWRTLLGAC 437


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/552 (39%), Positives = 323/552 (58%), Gaps = 43/552 (7%)

Query: 174 DLVSYNTLINGYAQVKEP-----CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
           D V YNTL+ GYA+   P       A+ +F +M +  + PD +TFV++  AC        
Sbjct: 92  DAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEE 151

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G+Q HA+  K LG    + +  T +INMYA+CG                           
Sbjct: 152 GRQAHALAVK-LGAADHDYVRPT-LINMYAECG--------------------------- 182

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                    AR +F   D   +VS+ AMI+   +     +AL LF +M+  G+ P  VT+
Sbjct: 183 -----DARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTV 237

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++VL AC  LGAL+ G+ +H  Y+  +  G  + ++TA+IDMYAKCGS++ A+ VF  + 
Sbjct: 238 ISVLSACALLGALELGRWVHD-YVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGME 296

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
              K    ++ +I   A HG G  +I++F EM+  G+KPD +TF+ VL ACSH GLV EG
Sbjct: 297 S--KDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEG 354

Query: 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
            Q+F+ M ++GI P ++HYGC+ DLLAR G+L+ AY  I  +P +   ++WR LL+AC  
Sbjct: 355 LQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGG 414

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H + ++G+   +++L L+  HG  YV+ SN+ A T  WEE   VRKLM + G+ K PG S
Sbjct: 415 HGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCS 474

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV-FDVDEEEKETV 647
            IE + T+H F A    HP+++E   M+ ++  +LK  GYVPNT  V   ++ EEEK   
Sbjct: 475 SIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAIS 534

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           + YHSEKLA+AFGL+N+    T+R+ KNLR+C DCH   KL+S ++ R I++RD  RFH 
Sbjct: 535 LKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHH 594

Query: 708 FKKGNCSCMDFW 719
           F++G CSC D+W
Sbjct: 595 FEEGICSCGDYW 606



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 233/492 (47%), Gaps = 66/492 (13%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG---LFRSR 62
           +   +L+ L  C SL+   Q+H   V +GL  H +  ++L++    +G   G   L  +R
Sbjct: 24  QQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLTL--CTGPDAGPAHLAYAR 81

Query: 63  ILFSQIDNPNIFIW-NTLMRGYSRSDSPQE-----ALVLYTSMLSKGIVSPNNFTFPFVL 116
            +F ++ +P   +W NTL+RGY+RS +P       A+ ++  ML +G V+P+ +TF  +L
Sbjct: 82  QVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEG-VAPDTYTFVSLL 140

Query: 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
            +CA   + + G Q H   +K G     ++R  LI+ Y+  G    A  +F G+    +V
Sbjct: 141 KACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVV 200

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           SYN +I    +   P  AL LFR+MQ   ++P + T +++ SAC  L    +G+  H  V
Sbjct: 201 SYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYV 260

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K +G +GS + + TA+I+MYAKCG +  A  VF  M  SK   AWS MI  Y       
Sbjct: 261 RK-IG-LGSLVKVSTALIDMYAKCGSLEDAIDVFQGM-ESKDRQAWSVMIVAYANH---- 313

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                                 GY +     +A+ LF +M+  G+ PD++T + VL AC 
Sbjct: 314 ----------------------GYGR-----EAISLFEEMKKEGMKPDDITFLGVLYACS 346

Query: 357 GLGALDFGKRLHQQYIEN-----VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
             G +  G     QY ++     +V G   +    V D+ A+ G ++ A     ++P N 
Sbjct: 347 HSGLVSEG----LQYFDDMKDHGIVPGIKHY--GCVTDLLARSGQLERAYKFIDELPIN- 399

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD---GVTFVTVLCACSHGGLVEEG 468
            T  L+ +++S    HG  E    VF  +    LK D   G  +V     C++ G  EE 
Sbjct: 400 PTPILWRTLLSACGGHGDFELGKRVFERI----LKLDDSHGGDYVIFSNLCANTGYWEEM 455

Query: 469 KQFFESMLNYGI 480
               + M   G+
Sbjct: 456 NMVRKLMSEKGV 467



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 115/219 (52%), Gaps = 9/219 (4%)

Query: 298 ARQLFDQMDQR-DLVSWTAMISGYSQVGGFSQ-----ALELFGKMESLGIHPDEVTMVAV 351
           ARQ+FD++    D V +  ++ GY++    S      A+ +F +M   G+ PD  T V++
Sbjct: 80  ARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L+AC    A + G++ H   ++ +    + ++   +I+MYA+CG    A  +F     + 
Sbjct: 140 LKACAAARAGEEGRQAHALAVK-LGAADHDYVRPTLINMYAECGDARAARVMFGGT--DG 196

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
             V  +N++I+   +      ++ +FREM+  GLKP  VT ++VL AC+  G +E G+  
Sbjct: 197 GCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWV 256

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
            + +   G+   ++    ++D+ A+ G L++A  + Q M
Sbjct: 257 HDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGM 295


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 334/554 (60%), Gaps = 18/554 (3%)

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK---- 230
           L+++N+L+   A+ + P  A   FR   D  + PD ++F  +  A T L           
Sbjct: 155 LLAHNSLLRALARGRRPHLAFGAFR---DLPLAPDNYSFTFLVRAATALAAAAASALDAA 211

Query: 231 ----QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
                 HA   ++ G  G +  +++  ++MYA  G +  A   F+ +  S      ++M+
Sbjct: 212 LIAGSVHASALRH-GHAG-DPHVQSGAVSMYAAAGDVGAARAAFAEI-ASPDVVCVTAMV 268

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                 G+ + AR+LFD M QRD V+W AMI+GY   G   +AL LF +M   G    EV
Sbjct: 269 GALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEV 328

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T+V+ L AC  LGAL+ GK +H     +     ++ L TA+IDMY+KCG++  A+ VF  
Sbjct: 329 TLVSALTACAQLGALERGKWVHS-CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDS 387

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           + +  + V  + S +SGLA +G+G   +A+F+ ME  G++P+GVTFV VL  CS  GLV+
Sbjct: 388 MGE--RNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVD 445

Query: 467 EGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+  F+SM  N+GI P +EHYGCMVDL  R GRLD+A   I  MP + +  +W ALL A
Sbjct: 446 EGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNA 505

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
            R+H+N ++G+ A  KL+ +E  + A +VLLSN+ A++  W+    VR +M   G++K P
Sbjct: 506 SRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVP 565

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S IE  G +H F    K+HP+ KEIE+ML +M  +L+  GY+ NT +V+FD++EE+KE
Sbjct: 566 GCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKE 625

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             +S HSEKLA+AFGL+       IRI KNLR+C DCH   K++S+++ REI++RD  RF
Sbjct: 626 DAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRF 685

Query: 706 HLFKKGNCSCMDFW 719
           H FK G CSC D+W
Sbjct: 686 HHFKDGACSCKDYW 699



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 77/371 (20%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC------- 129
           N+L+R  +R   P  A   +  +     ++P+N++F F++ +   L++  +         
Sbjct: 159 NSLLRALARGRRPHLAFGAFRDL----PLAPDNYSFTFLVRAATALAAAAASALDAALIA 214

Query: 130 -QIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---------------------------- 160
             +H   ++ G   D  +++  +  Y+  G +                            
Sbjct: 215 GSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATG 274

Query: 161 ---NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
              + A ++F+G   RD V++N +I GY        AL LF +M+ +       T V+  
Sbjct: 275 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 334

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           +AC +L     GK  H+  +     +  ++ L TA+I+MY+KCG +  A  VF +MG  +
Sbjct: 335 TACAQLGALERGKWVHSCAHSR--GMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG-ER 391

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           +   W+S +SG    G              RD                    L LF +ME
Sbjct: 392 NVYTWTSAVSGLAMNGM------------GRD-------------------CLALFKRME 420

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
           S G+ P+ VT V VLR C   G +D G+        N      +     ++D+Y + G +
Sbjct: 421 STGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRL 480

Query: 398 DTALSVFYKIP 408
           D A++    +P
Sbjct: 481 DDAVNFINGMP 491



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 2/245 (0%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   +   WN ++ GY  +   +EAL L+  M   G  +    T    L +CA
Sbjct: 280 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAG-AAVGEVTLVSALTACA 338

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L + + G  +H      G+   + +  ALI  YS  G +  A +VF+    R++ ++ +
Sbjct: 339 QLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS 398

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
            ++G A        L LF++M+ + ++P+  TFV +   C+       G+     +  N 
Sbjct: 399 AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNH 458

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G +   +     ++++Y + G ++ A    + M +      W ++++       +E  + 
Sbjct: 459 G-IDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKY 517

Query: 301 LFDQM 305
             D++
Sbjct: 518 AMDKL 522


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/701 (33%), Positives = 378/701 (53%), Gaps = 64/701 (9%)

Query: 45  LISFFALSGC---KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           L+S +A  G       LFR+          ++  WNT++    +     EA+ +   M+S
Sbjct: 216 LLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVS 275

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYI 160
            G V P+  TF   L +C+RL     G ++H  ++K   L  + F+ +AL+  Y+    +
Sbjct: 276 LG-VRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKV 334

Query: 161 NNAHKVFE--GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMF 217
            +A +VF+     +R L  +N +I GYAQ      AL LF +M+ ++   P   T   + 
Sbjct: 335 ASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVL 394

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
            AC         +  H  V K  G  G N  ++ A+++MYA                   
Sbjct: 395 PACARSEGFAGKEAMHGYVVKR-GMAG-NRFVQNALMDMYA------------------- 433

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM- 336
                        R G+++ AR++F  +D RD+VSW  +I+G    G  ++A +L  +M 
Sbjct: 434 -------------RLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQ 480

Query: 337 ---------------ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
                          E+    P+ +T++ +L  C  L A   GK +H   + + +   +I
Sbjct: 481 LPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALES-DI 539

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
            + +A++DMYAKCG +  + +VF ++P+  + V  +N +I     HGLG+ ++A+F EM 
Sbjct: 540 AVGSALVDMYAKCGCLAASRAVFDRLPR--RNVITWNVLIMAYGMHGLGDEAVALFDEMA 597

Query: 442 LMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGR 499
             G   P+ VTF+  L ACSH GLV+ G + F  M  ++G+KP  + + C+VD+L R GR
Sbjct: 598 AGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGR 657

Query: 500 LDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           LDEAY +I SM P +     W +LL ACRLHRN ++GE+A ++L +LEP   +HYVLL N
Sbjct: 658 LDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCN 717

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
           + +    W+++  VR  M   G+ K PG S+IE +G +HRF+A + SHP + E+   +  
Sbjct: 718 IYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDA 777

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           +  +++  GY P+T  V+ DVDE+EK  ++ YHSEKLA+AFGL+ +     IR+ KNLR+
Sbjct: 778 LWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRV 837

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           C DCH A K +S++  R+I++RD  RFH F+ G+CSC D+W
Sbjct: 838 CNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 206/470 (43%), Gaps = 66/470 (14%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL---SSFKSGCQIHCHIIKFGL---EFD 143
           + AL     ML++G    ++FT   VL +C+ L      + G + H   +K G      +
Sbjct: 150 ERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRE 209

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKEPCPALWL 197
            F  NAL+  Y+  G +++A  +F  + A       D+V++NT+I+   Q      A+ +
Sbjct: 210 RFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEV 269

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
              M    ++PD  TF +   AC+ L    +G++ HAVV K+   + +N  + +A+++MY
Sbjct: 270 LYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDAD-LAANSFVASALVDMY 328

Query: 258 AKCGLMNMAERVFSTMG-MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           A    +  A RVF  +   S+    W++MI GY + G           MD+         
Sbjct: 329 AGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAG-----------MDE--------- 368

Query: 317 ISGYSQVGGFSQALELFGKMES-LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
                      +ALELF +ME+  G  P E TM  VL AC        GK     Y+   
Sbjct: 369 -----------EALELFSRMEAEAGCAPSETTMSGVLPACARSEGF-AGKEAMHGYVVKR 416

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
               N F+  A++DMYA+ G +D A  +F  I  + + V  +N++I+G    G    +  
Sbjct: 417 GMAGNRFVQNALMDMYARLGEMDVARRIFAMI--DPRDVVSWNTLITGCVVQGHAAEAFQ 474

Query: 436 VFREMELMGLK----------------PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +  EM+L                    P+ +T +T+L  C+       GK+     + + 
Sbjct: 475 LVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHA 534

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           ++  +     +VD+ A+ G L  +  +   +P   N + W  L+ A  +H
Sbjct: 535 LESDIAVGSALVDMYAKCGCLAASRAVFDRLPRR-NVITWNVLIMAYGMH 583



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 177/372 (47%), Gaps = 45/372 (12%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTEL---NDPRI 228
           RD VSYN+LI+     ++   AL   R M  +      +FT V++  AC+ L   +  R+
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 229 GKQFHAVVYKNLGCV--GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
           G++ HA   K  G +  G       A+++MYA+ GL++ A+ +F T      TAA  S  
Sbjct: 191 GREAHAFALKR-GFLDEGRERFPFNALLSMYARLGLVDDAQSLFRT------TAAAFSPG 243

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
            G                    D+V+W  MIS   Q G  ++A+E+   M SLG+ PD V
Sbjct: 244 GG--------------------DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGV 283

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T  + L AC  L  L  G+ +H   +++     N F+ +A++DMYA    + +A  VF  
Sbjct: 284 TFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDM 343

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL-MGLKPDGVTFVTVLCACSHGGLV 465
           +P+  + + ++N++I G AQ G+ E ++ +F  ME   G  P   T   VL AC+     
Sbjct: 344 VPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR---- 399

Query: 466 EEGKQFFESMLNYGIKPQMEH----YGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWR 520
            EG    E+M  Y +K  M         ++D+ AR G +D A  +   + P D   V W 
Sbjct: 400 SEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDV--VSWN 457

Query: 521 ALLAACRLHRNA 532
            L+  C +  +A
Sbjct: 458 TLITGCVVQGHA 469



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 18/137 (13%)

Query: 10  SLLALLESCKSLK---QALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +L+ LL  C +L    +  +IHG  V   L   I+  S L+  +A  GC   L  SR +F
Sbjct: 506 TLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGC---LAASRAVF 562

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            ++   N+  WN L+  Y       EA+ L+  M + G  +PN  TF   L +C+     
Sbjct: 563 DRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACS----- 617

Query: 126 KSGCQIHCHIIKFGLEF 142
                 H  ++  GLE 
Sbjct: 618 ------HSGLVDRGLEL 628


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 350/607 (57%), Gaps = 39/607 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L SC    S ++G Q+H  ++  GL  D  +   L+  Y+  G + +A ++F+G   R+
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +  +N LI  YA+      A+ L+R M +  ++PD FT+  +  AC  L D   G++ H 
Sbjct: 128 VFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQ 187

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            V       G ++ +   V++MYAKCG                                 
Sbjct: 188 RVSGTR--WGQDVFVCAGVVDMYAKCGC-------------------------------- 213

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           ++ AR +FD +  RD V W +MI+ Y Q G   +AL L   M + GI P   T+V+ + A
Sbjct: 214 VDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSA 273

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
                AL  G+ LH  +     FG    L T+++DMYAK G +  A  +F ++ K  + +
Sbjct: 274 AADAAALPRGRELHG-FGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMK--REL 330

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
             +N++I G   HG  + ++A+F +M+    + PD +TFV VL AC+HGG+VEE K+FF 
Sbjct: 331 VSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFY 390

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M+N Y IKP ++HY C++D+L   GR +EAY LI+ M  + +S IW ALL  C++H+N 
Sbjct: 391 LMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNV 450

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++GE+A QKL++LEP+   +YV LSN+ A++ +WE+A +VRKLM + G++K    S+IE 
Sbjct: 451 ELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIEL 510

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
            G  H FL    SHP++ EI   L+ +   +  AGYVP+ + V  +VD++EK  +V  HS
Sbjct: 511 KGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHS 570

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LA+AFGLI++     + +TKNLR+C DCH+  KL+S+I +REI++RD  R+H F  G 
Sbjct: 571 ERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGE 630

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 631 CSCKDYW 637



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 234/515 (45%), Gaps = 54/515 (10%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFS 66
           H+S+L    +  SL+   Q+HG+++ SGL    + S++L+  +A  G    +  +R LF 
Sbjct: 65  HTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACG---QVGHARRLFD 121

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   N+F+WN L+R Y+R    + A+ LY  M+  G V P+NFT+P VL +CA L   +
Sbjct: 122 GMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHG-VEPDNFTYPLVLKACAALLDLE 180

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G ++H  +       D+F+   ++  Y+  G +++A  VF+G   RD V +N++I  Y 
Sbjct: 181 TGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYG 240

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           Q   P  AL L R M  + I P   T V+  SA  +      G++ H   ++     G  
Sbjct: 241 QNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRR--GFGLQ 298

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             LKT++++MYAK G + +A  +F  + M +   +W++MI GY   G  + A  LF++M 
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGHADEALALFNKM- 356

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                       G +QV                   PD +T V VL AC   G ++  K 
Sbjct: 357 -----------KGDAQV------------------TPDNITFVGVLSACNHGGMVEEAKE 387

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
                +        +   T VID+    G  + A  +   +     +  ++ ++++G   
Sbjct: 388 FFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDS-GIWGALLNGCKI 446

Query: 427 HG---LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK-- 481
           H    LGE ++    E+E      D   +V +    +  G  E+  +  + M N G+K  
Sbjct: 447 HKNVELGELALQKLIELE----PEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKI 502

Query: 482 ---PQMEHYGCMVDLLARDG---RLDEAYGLIQSM 510
                +E  G     L  D    R DE YG ++ +
Sbjct: 503 LACSWIELKGKTHGFLVGDASHPRSDEIYGELERL 537



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 102/179 (56%), Gaps = 8/179 (4%)

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            ++L++CV  G+L  G++LH + + +   G +  L+T ++D+YA CG +  A  +F  +P
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVS-GLGPDTVLSTKLVDLYAACGQVGHARRLFDGMP 124

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           K  + V L+N +I   A+ G  E ++ ++R M   G++PD  T+  VL AC+    +E G
Sbjct: 125 K--RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETG 182

Query: 469 KQFFESMLNYGIKPQMEHYGC--MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           ++  + +   G +   + + C  +VD+ A+ G +D+A  +   +    ++V+W +++AA
Sbjct: 183 REVHQRV--SGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAV-RDAVVWNSMIAA 238


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/598 (37%), Positives = 349/598 (58%), Gaps = 46/598 (7%)

Query: 130 QIHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
           Q+H   ++ GL   D +  +AL+H Y       +A + F+     + V    + +GY + 
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 189 KEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                +L LFR M   DS    D    +  FSA   + D  +    HA++ K        
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAK-------- 225

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK--IERARQLFDQ 304
                                     +G  ++    ++M+  Y + G   +E AR++FD 
Sbjct: 226 --------------------------IGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDT 259

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG--IHPDEVTMVAVLRACVGLGALD 362
           M +RD+VSW +MI+ Y+Q G  ++A+ L+ KM ++G  I  + V + AVL AC   GA+ 
Sbjct: 260 M-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQ 318

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GKR+H Q +  +    N+++ T+++DMY+KCG ++ A   F KI +  K +  ++++I+
Sbjct: 319 TGKRIHNQVVR-MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKE--KNILSWSAMIT 375

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
           G   HG G+ ++ +F EM+  GL+P+ +TF++VL ACSH GL++EG+ ++ +M   +GI+
Sbjct: 376 GYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIE 435

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
             +EHYGCMVDLL R G LDEAY LI+ M    ++ IW ALL+ACR+H+N ++ E++ ++
Sbjct: 436 AGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKR 495

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L +L+  +  +YVLLSN+ AE   W++  ++R L+    I+KPPG+S  E  G ++ F  
Sbjct: 496 LFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYV 555

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             KSHPQ  EI   L+ +  +++ AGYVPNT  V+ D+DEEEKE+ +  HSEKLA+AF L
Sbjct: 556 GDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFAL 615

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +NS  +  I I KNLR+C DCH A K +++I  REI++RD  RFH FK G CSC D+W
Sbjct: 616 MNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 199/426 (46%), Gaps = 49/426 (11%)

Query: 26  QIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
           Q+H   + SGL  +   S+S L+  +    C   +  +R  F +I +PN  I   +  GY
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMY--HHCSRPM-DARRAFDEIPDPNPVIVTAMASGY 170

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV-LNSCARLSSFKSGCQIHCHIIKFGLEF 142
            R++    +L L+ +M++    S  +     V  ++ AR+        +H  I K G E 
Sbjct: 171 VRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFER 230

Query: 143 DLFIRNALIHFYSIFGY--INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           +  + N ++  Y+  G   +  A KVF+ ++ RD+VS+N++I  YAQ      A+ L+ K
Sbjct: 231 NAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLYSK 289

Query: 201 MQD--SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           M +    I+ +A    A+  AC      + GK+ H  V + +G +  N+ + T++++MY+
Sbjct: 290 MLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MG-LEENVYVGTSIVDMYS 347

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG + MA R F  +   K+  +WS+MI+GY   G+ +                      
Sbjct: 348 KCGRVEMASRAFRKI-KEKNILSWSAMITGYGMHGRGQ---------------------- 384

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
                    +ALE+F +M+  G+ P+ +T ++VL AC   G LD G+  +    +     
Sbjct: 385 ---------EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIE 435

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIA 435
             +     ++D+  + G +D A S+  ++ K     +++ +++S    H    L E S+ 
Sbjct: 436 AGVEHYGCMVDLLGRAGCLDEAYSLIKEM-KVKPDAAIWGALLSACRIHKNVELAEMSVK 494

Query: 436 VFREME 441
              E++
Sbjct: 495 RLFELD 500



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 158/321 (49%), Gaps = 12/321 (3%)

Query: 4   LVLEHSSLLALLESCKSLKQAL--QIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFR 60
           +V E ++L+A   S +   + +   +H  I   G   +    + ++  +A  G ++ L  
Sbjct: 194 VVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRD-LEV 252

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSC 119
           +R +F  ++  ++  WN+++  Y+++    EA+ LY+ ML+  G +  N      VL +C
Sbjct: 253 ARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLAC 311

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A   + ++G +IH  +++ GLE ++++  +++  YS  G +  A + F     ++++S++
Sbjct: 312 AHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWS 371

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I GY        AL +F +M+ S ++P+  TF+++ +AC+       G+ ++  + + 
Sbjct: 372 AMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQE 431

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G + + +     ++++  + G ++ A  +   M +    A W +++S       +E A 
Sbjct: 432 FG-IEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELA- 489

Query: 300 QLFDQMDQRDLVSWTAMISGY 320
               +M  + L    A  SGY
Sbjct: 490 ----EMSVKRLFELDASNSGY 506


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 332/562 (59%), Gaps = 39/562 (6%)

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +N A  +F G        +NT+I GY  V     AL  + +M     +PD FT+  +  A
Sbjct: 82  MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT L   R GKQ H  V+K LG + +++ ++ ++INMY +C                   
Sbjct: 142 CTRLKSIREGKQIHGQVFK-LG-LEADVFVQNSLINMYGRC------------------- 180

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF-GKMES 338
                        G++E +  +F++++ +   SW++M+S  + +G +S+ L LF G    
Sbjct: 181 -------------GEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSE 227

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
             +  +E  MV+ L AC   GAL+ G  +H   + N+    NI + T+++DMY KCG +D
Sbjct: 228 TNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNIS-ELNIIVQTSLVDMYVKCGCLD 286

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            AL +F K+ K  +    ++++ISGLA HG GE+++ +F +M   GL+PD V +V+VL A
Sbjct: 287 KALHIFQKMEK--RNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNA 344

Query: 459 CSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV+EG++ F  ML  G ++P  EHYGC+VDLL R G L+EA   IQS+P + N V
Sbjct: 345 CSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDV 404

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           IWR  L+ CR+ +N ++G+IA Q+LL L   +   Y+L+SN+ ++   W++  + R  + 
Sbjct: 405 IWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIA 464

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
             G+++ PG+S +E  G  HRF++  +SHP+ KEI  ML  M  +LK  GY P+  Q++ 
Sbjct: 465 IKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILL 524

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           +VDEEEK+  +  HS+K+A+AFGL+ +     I+I +NLR+C DCH   K +S IY REI
Sbjct: 525 NVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREI 584

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD  RFHLFK G CSC D+W
Sbjct: 585 VVRDRNRFHLFKGGTCSCKDYW 606



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 197/400 (49%), Gaps = 38/400 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQ--LISFFALSGCKNGLFRSRILFSQID 69
           L LL+ C ++ +  Q+H + +   L +  S S   +++  A SG +N +  +  +F  ID
Sbjct: 34  LYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGID 93

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +P  F +NT++RGY    S +EAL  Y  M+ +G   P+NFT+P +L +C RL S + G 
Sbjct: 94  DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRG-NEPDNFTYPCLLKACTRLKSIREGK 152

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH  + K GLE D+F++N+LI+ Y   G +  +  VFE   ++   S++++++  A + 
Sbjct: 153 QIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG 212

Query: 190 EPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                L LFR M  ++ ++ +    V+   AC       +G   H  + +N+  +  N++
Sbjct: 213 MWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISEL--NII 270

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           ++T++++MY KCG ++ A  +F  M   ++   +S+MISG    G+ E            
Sbjct: 271 VQTSLVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALHGEGE------------ 317

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                               AL +F KM   G+ PD V  V+VL AC   G +  G+R+ 
Sbjct: 318 -------------------SALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            + ++             ++D+  + G ++ AL     IP
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIP 398



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 12/308 (3%)

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
           E  +  A  +F  +D      +  MI GY  V  F +AL  + +M   G  PD  T   +
Sbjct: 79  ENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCL 138

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L+AC  L ++  GK++H Q  + +    ++F+  ++I+MY +CG ++ + +VF K+    
Sbjct: 139 LKACTRLKSIREGKQIHGQVFK-LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLES-- 195

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           KT + ++S++S  A  G+    + +FR M     LK +    V+ L AC++ G +  G  
Sbjct: 196 KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMS 255

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
               +L    +  +     +VD+  + G LD+A  + Q M    N++ + A+++   LH 
Sbjct: 256 IHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALHG 314

Query: 531 NAKIGEIAGQKLLD--LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
             +       K++   LEPDH   YV + N  + +   +E R+V   M   G  +P    
Sbjct: 315 EGESALRMFSKMIKEGLEPDHVV-YVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTA-- 371

Query: 589 YIEHNGTL 596
             EH G L
Sbjct: 372 --EHYGCL 377



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 153/350 (43%), Gaps = 33/350 (9%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL++C   KS+++  QIHGQ+   GL   +   + LI+ +   G    +  S  +F +++
Sbjct: 138 LLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCG---EMELSSAVFEKLE 194

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +     W++++   +      E L+L+  M S+  +          L +CA   +   G 
Sbjct: 195 SKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGM 254

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            IH  +++   E ++ ++ +L+  Y   G ++ A  +F+    R+ ++Y+ +I+G A   
Sbjct: 255 SIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHG 314

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           E   AL +F KM    ++PD   +V++ +AC+     + G++  A + K  G V      
Sbjct: 315 EGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKE-GKVEPTAEH 373

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR---------- 299
              ++++  + GL+  A     ++ + K+   W + +S       IE  +          
Sbjct: 374 YGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLS 433

Query: 300 -----------QLFDQMDQRDLVSWTAM---ISGYSQVGGFSQALELFGK 335
                       L+ Q    D V+ T     I G  Q  GFS  +EL GK
Sbjct: 434 SHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFS-IVELKGK 482


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/630 (36%), Positives = 345/630 (54%), Gaps = 47/630 (7%)

Query: 89  PQEALVLYTSM--LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
           P   L+L TS   L    +  +   +  +L  C        G  +H HI++     D+ +
Sbjct: 38  PSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVM 97

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            N L++ Y+  G +  A KVFE    RD V++ TLI+GY+Q   PC AL  F +M     
Sbjct: 98  GNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGY 157

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
            P+ FT  ++  A         G Q H        CV               KCG     
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCCGHQLHGF------CV---------------KCGF---- 192

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
                      +    S+++  YTR G ++ A+ +FD ++ R+ VSW A+I+G+++  G 
Sbjct: 193 ---------DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN----VVFGRNIF 382
            +ALELF  M   G  P   +  ++  AC   G L+ GK +H   I++    V F  N  
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L     DMYAK GSI  A  +F ++ K  + V  +NS+++  AQHG G+ ++  F EM  
Sbjct: 304 L-----DMYAKSGSIHDARKIFDRLAK--RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRR 356

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
           +G++P+ ++F++VL ACSH GL++EG  ++E M   GI P+  HY  +VDLL R G L+ 
Sbjct: 357 VGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNR 416

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
           A   I+ MP +  + IW+ALL ACR+H+N ++G  A + + +L+PD    +V+L N+ A 
Sbjct: 417 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 476

Query: 563 TYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMK 622
             RW +A +VRK M +SG++K P  S++E    +H F+A+ + HPQ +EI    +++  K
Sbjct: 477 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 536

Query: 623 LKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDC 682
           +K  GYVP+T  V+  VD++E+E  + YHSEK+ALAF L+N+    TI I KN+R+CGDC
Sbjct: 537 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 596

Query: 683 HLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           H A KL S++  REI+VRD  RFH FK  +
Sbjct: 597 HTAIKLASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 220/478 (46%), Gaps = 53/478 (11%)

Query: 14  LLESCKSLKQALQ---IHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQID 69
           LL+ C   K  +Q   +H  I+ S   H I   + L++ +A  G    L  +R +F ++ 
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG---SLEEARKVFEKMP 122

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W TL+ GYS+ D P +AL+ +  ML  G  SPN FT   V+ + A       G 
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG-YSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           Q+H   +K G + ++ + +AL+  Y+ +G +++A  VF+   +R+ VS+N LI G+A+  
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN---LGCVGSN 246
               AL LF+ M     +P  F++ ++F AC+       GK  HA + K+   L     N
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
            LL     +MYAK G ++ A ++F  +   +   +W+S++                    
Sbjct: 302 TLL-----DMYAKSGSIHDARKIFDRLA-KRDVVSWNSLL-------------------- 335

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                      + Y+Q G   +A+  F +M  +GI P+E++ ++VL AC   G LD G  
Sbjct: 336 -----------TAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            ++   ++ +        T V+D+  + G ++ AL    ++P    T +++ ++++    
Sbjct: 385 YYELMKKDGIVPEAWHYVT-VVDLLGRAGDLNRALRFIEEMPIE-PTAAIWKALLNACRM 442

Query: 427 HGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
           H    T +  +    +  L PD     V +    + GG   +  +  + M   G+K +
Sbjct: 443 H--KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 498


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/670 (35%), Positives = 377/670 (56%), Gaps = 27/670 (4%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP--NNFT---------FP 113
           F+   NP   +++  +R  S   S   +L  +TS+ + G +    + FT         F 
Sbjct: 10  FNAFLNP---LYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFS 66

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +L SC +L S   G Q+H  II  G   D FI N L++FYS  G   ++  +F     R
Sbjct: 67  HLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRR 126

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           +++S+N LINGY Q+ +   A  LF +M +  I     T+ AM +  T+    +      
Sbjct: 127 NVMSFNILINGYLQLGDLESAQKLFDEMSERNIA----TWNAMIAGLTQFEFNKQALSLF 182

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYT 290
             +Y  LG +     L + V+   A    +   + V + +   G   S+   SS+   Y 
Sbjct: 183 KEMY-GLGFLPDEFTLGS-VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYI 240

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           + G +    +L   M  R +V+W  +I+G +Q G   + L  +  M+  G  PD++T V+
Sbjct: 241 KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVS 300

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC  L  L  G+++H + I+       + + +++I MY++ G ++ ++  F  + + 
Sbjct: 301 VLSACSELATLGQGQQIHAEVIKAGA-SSVLAVVSSLISMYSRSGCLEDSIKAF--VDRE 357

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
              V L++S+I+    HG GE ++ +F +ME + ++ + VTF+++L ACSH GL E+G +
Sbjct: 358 NFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTE 417

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F+ M+  Y +KP++EHY C+VDLL R GRL+EA G+I+SMP   + +IW+ LLAAC+LH
Sbjct: 418 YFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLH 477

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
           + A++ E   ++++ L+P   A YVLLSN+ A    W    Q+RK M D  ++K PG S+
Sbjct: 478 KEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISW 537

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           +E    +H+F    KSHPQ  EI+L LK++  +LK  GYVP    V+ D+D EEKE  ++
Sbjct: 538 LELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLA 597

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           +HSEK A+AF L+N+     IR+ KNLR+C DCH A K +S I  REI+VRDA RFH FK
Sbjct: 598 HHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFK 657

Query: 710 KGNCSCMDFW 719
            G CSC ++W
Sbjct: 658 DGECSCGNYW 667


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 334/554 (60%), Gaps = 18/554 (3%)

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK---- 230
           L+++N+L+   A+ + P  A   FR   D  + PD ++F  +  A T L           
Sbjct: 162 LLAHNSLLRALARGRRPHLAFGAFR---DLPLAPDNYSFTFLVRAATALAAAAASALDAA 218

Query: 231 ----QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
                 HA   ++ G  G +  +++  ++MYA  G +  A   F+ +  S      ++M+
Sbjct: 219 LIAGSVHASALRH-GHAG-DPHVQSGAVSMYAAAGDVGAARAAFAEI-ASPDVVCVTAMV 275

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                 G+ + AR+LFD M QRD V+W AMI+GY   G   +AL LF +M   G    EV
Sbjct: 276 GALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEV 335

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T+V+ L AC  LGAL+ GK +H     +     ++ L TA+IDMY+KCG++  A+ VF  
Sbjct: 336 TLVSALTACAQLGALERGKWVHS-CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDS 394

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           + +  + V  + S +SGLA +G+G   +A+F+ ME  G++P+GVTFV VL  CS  GLV+
Sbjct: 395 MGE--RNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVD 452

Query: 467 EGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+  F+SM  N+GI P +EHYGCMVDL  R GRLD+A   I  MP + +  +W ALL A
Sbjct: 453 EGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNA 512

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
            R+H+N ++G+ A  KL+ +E  + A +VLLSN+ A++  W+    VR +M   G++K P
Sbjct: 513 SRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVP 572

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S IE  G +H F    K+HP+ KEIE+ML +M  +L+  GY+ NT +V+FD++EE+KE
Sbjct: 573 GCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKE 632

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             +S HSEKLA+AFGL+       IRI KNLR+C DCH   K++S+++ REI++RD  RF
Sbjct: 633 DAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRF 692

Query: 706 HLFKKGNCSCMDFW 719
           H FK G CSC D+W
Sbjct: 693 HHFKDGACSCKDYW 706



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 77/371 (20%)

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC------- 129
           N+L+R  +R   P  A   +  +     ++P+N++F F++ +   L++  +         
Sbjct: 166 NSLLRALARGRRPHLAFGAFRDL----PLAPDNYSFTFLVRAATALAAAAASALDAALIA 221

Query: 130 -QIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---------------------------- 160
             +H   ++ G   D  +++  +  Y+  G +                            
Sbjct: 222 GSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATG 281

Query: 161 ---NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
              + A ++F+G   RD V++N +I GY        AL LF +M+ +       T V+  
Sbjct: 282 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 341

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           +AC +L     GK  H+  +     +  ++ L TA+I+MY+KCG +  A  VF +MG  +
Sbjct: 342 TACAQLGALERGKWVHSCAHSR--GMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG-ER 398

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           +   W+S +SG    G              RD                    L LF +ME
Sbjct: 399 NVYTWTSAVSGLAMNGM------------GRD-------------------CLALFKRME 427

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
           S G+ P+ VT V VLR C   G +D G+        N      +     ++D+Y + G +
Sbjct: 428 STGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRL 487

Query: 398 DTALSVFYKIP 408
           D A++    +P
Sbjct: 488 DDAVNFINGMP 498



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 2/245 (0%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   +   WN ++ GY  +   +EAL L+  M   G  +    T    L +CA
Sbjct: 287 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAG-AAVGEVTLVSALTACA 345

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L + + G  +H      G+   + +  ALI  YS  G +  A +VF+    R++ ++ +
Sbjct: 346 QLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS 405

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
            ++G A        L LF++M+ + ++P+  TFV +   C+       G+     +  N 
Sbjct: 406 AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNH 465

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G +   +     ++++Y + G ++ A    + M +      W ++++       +E  + 
Sbjct: 466 G-IDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKY 524

Query: 301 LFDQM 305
             D++
Sbjct: 525 AMDKL 529


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/636 (35%), Positives = 371/636 (58%), Gaps = 48/636 (7%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+LAL+E+C +++Q  QIH + + S L++     +++I+ F    C   L  +  +F+Q 
Sbjct: 8   SVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHAC---LDYATQVFNQT 64

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P+ FI+N ++R YS S +P  A+ +Y  M +   +  + +T+PFV  +CA   + + G
Sbjct: 65  QEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKG 124

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            ++H  I++ G E D F++++L++FY + G I NA +VF+   A+D+V +N LI GYA+ 
Sbjct: 125 KEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQ 184

Query: 189 KEPCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                +  +F++M +   ++P+  T + +  AC E  + ++G+  H  + K++  +   +
Sbjct: 185 GMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDM-VLREGV 243

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            L+ A+IN+Y KCG +                                + AR+LFD++ +
Sbjct: 244 KLEAALINLYVKCGYL--------------------------------DGARKLFDEIPE 271

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           ++ V W ++I GY Q+G  ++ +EL  +M    + PD  T+  VL AC  +GA + G  +
Sbjct: 272 KNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWV 331

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H+   +  ++  ++F+ TA+IDMYAKCG I  A  VF ++  N + V+ +N+I+SG A H
Sbjct: 332 HRFAEKKGIW--DVFIGTALIDMYAKCGFIGAARKVFDQM--NERNVATWNAILSGYASH 387

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEH 486
           G  E++I +F EM   G +PD +TF+ VL AC+H GLVE GKQ+F+ ML Y  I P++EH
Sbjct: 388 GQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEH 447

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGCMVDLL R G L EA  LI+ M  + N V+W ALL+AC +H N +IGE A   ++ L 
Sbjct: 448 YGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLN 507

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
              G  YV+L+N+ A   R+   + VR++M + GI K  G S IE    +H F+ + K H
Sbjct: 508 AMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMH 567

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           P+++EI  +L +++ KLK AGYVP     +  +DEE
Sbjct: 568 PRSEEIYSVLDELSKKLKMAGYVP-----LLALDEE 598


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/686 (34%), Positives = 367/686 (53%), Gaps = 68/686 (9%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F ++ + +   WN L+ GYS S     A+  Y +M+     +    T   +L   +    
Sbjct: 95  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL--- 181
              G QIH  +IK G E  L + + L++ Y+  G I++A KVF G   R+ V YN+L   
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214

Query: 182 ---------------------------INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
                                      I G AQ      A+  FR+M+   ++ D + F 
Sbjct: 215 LLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFG 274

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           ++  AC  L     GKQ HA + +       ++ + +A+I+MY KC  ++ A+ VF    
Sbjct: 275 SVLPACGGLGAINEGKQIHACIIRT--NFQDHIYVGSALIDMYCKCKCLHYAKTVF---- 328

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
                                       D+M Q+++VSWTAM+ GY Q G   +A+++F 
Sbjct: 329 ----------------------------DRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
            M+  GI PD  T+   + AC  + +L+ G + H + I + +    + ++ +++ +Y KC
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLI-HYVTVSNSLVTLYGKC 419

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G ID +  +F ++  N++    + +++S  AQ G    +I +F +M   GLKPDGVT   
Sbjct: 420 GDIDDSTRLFNEM--NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTG 477

Query: 455 VLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           V+ ACS  GLVE+G+++F+ M + YGI P + HY CM+DL +R GRL+EA   I  MP+ 
Sbjct: 478 VISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFP 537

Query: 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573
            +++ W  LL+ACR   N +IG+ A + L++L+P H A Y LLS++ A   +W+   Q+R
Sbjct: 538 PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLR 597

Query: 574 KLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
           + M +  ++K PG S+I+  G LH F A  +S P   +I   L+++  K+   GY P+T 
Sbjct: 598 RGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTS 657

Query: 634 QVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIY 693
            V  DV+E  K  +++YHSE+LA+AFGLI   S + IR+ KNLR+C DCH A K +S + 
Sbjct: 658 FVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVT 717

Query: 694 RREIMVRDAIRFHLFKKGNCSCMDFW 719
            REI+VRDA+RFH FK G CSC DFW
Sbjct: 718 GREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 219/435 (50%), Gaps = 17/435 (3%)

Query: 96  YTSMLSKGIVS----PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151
           Y  M+   I+     P  F +  ++++ A + S     ++   I     + +LF  N L+
Sbjct: 24  YVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIP----QPNLFSWNNLL 79

Query: 152 HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK-MQDSCIQPDA 210
             YS  G I+     FE    RD V++N LI GY+       A+  +   M+D       
Sbjct: 80  LAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTR 139

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T + M    +      +GKQ H  V K LG   S +L+ + ++ MYA  G ++ A++VF
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIK-LG-FESYLLVGSPLLYMYANVGCISDAKKVF 197

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             +   ++T  ++S++ G    G IE A QLF  M ++D VSW AMI G +Q G   +A+
Sbjct: 198 YGLD-DRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAI 255

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390
           E F +M+  G+  D+    +VL AC GLGA++ GK++H   I    F  +I++ +A+IDM
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIR-TNFQDHIYVGSALIDM 314

Query: 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450
           Y KC  +  A +VF ++ +  K V  + +++ G  Q G  E ++ +F +M+  G+ PD  
Sbjct: 315 YCKCKCLHYAKTVFDRMKQ--KNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372

Query: 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           T    + AC++   +EEG QF    +  G+   +     +V L  + G +D++  L   M
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 511 PYDANSVIWRALLAA 525
               ++V W A+++A
Sbjct: 433 NV-RDAVSWTAMVSA 446



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 220/532 (41%), Gaps = 106/532 (19%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L L  S   +    QIHGQ++  G   ++   S L+  +A  GC   +  ++ +F  +
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC---ISDAKKVFYGL 200

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSM---------LSKGIVSP------------ 107
           D+ N  ++N+LM G       ++AL L+  M         + KG+               
Sbjct: 201 DDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFRE 260

Query: 108 --------NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
                   + + F  VL +C  L +   G QIH  II+   +  +++ +ALI  Y     
Sbjct: 261 MKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC 320

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           ++ A  VF+    +++VS+  ++ GY Q      A+ +F  MQ S I PD +T     SA
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C  ++    G QFH     + G +   + +  +++ +Y KCG ++ + R+F+ M + +  
Sbjct: 381 CANVSSLEEGSQFHGKAITS-GLI-HYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDA 437

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            +W++M+S Y + G+     QLFD+M Q                                
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQH------------------------------- 466

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           G+ PD VT+  V+ AC   G ++ G+R  +          +I   + +ID++++ G ++ 
Sbjct: 467 GLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEE 526

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A+     +P                                      PD + + T+L AC
Sbjct: 527 AMRFINGMP------------------------------------FPPDAIGWTTLLSAC 550

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEH-YGCMVDLLARDGRLDEAYGLIQSM 510
            + G +E GK   ES++   + P     Y  +  + A  G+ D    L + M
Sbjct: 551 RNKGNLEIGKWAAESLIE--LDPHHPAGYTLLSSIYASKGKWDSVAQLRRGM 600



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 154/362 (42%), Gaps = 46/362 (12%)

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
           N  R  K  H  + + L        L   +++ YA       A RVF  +    +  +W+
Sbjct: 20  NQSRYVKMIHGNIIRALPY--PETFLYNNIVHAYALMKSSTYARRVFDRIP-QPNLFSWN 76

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK-MESLGIH 342
           +++  Y++ G I      F+++  RD V+W  +I GYS  G    A++ +   M     +
Sbjct: 77  NLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSAN 136

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
              VT++ +L+     G +  GK++H Q I+ + F   + + + ++ MYA  G I  A  
Sbjct: 137 LTRVTLMTMLKLSSSNGHVSLGKQIHGQVIK-LGFESYLLVGSPLLYMYANVGCISDAKK 195

Query: 403 VFYKIPKNLKTVSLFNSI------------------------------ISGLAQHGLGET 432
           VFY +    +   ++NS+                              I GLAQ+GL + 
Sbjct: 196 VFYGLDD--RNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKE 253

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           +I  FREM++ GLK D   F +VL AC   G + EGKQ    ++    +  +     ++D
Sbjct: 254 AIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALID 313

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-----EP 547
           +  +   L  A  +   M    N V W A++     +      E A +  LD+     +P
Sbjct: 314 MYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVG---YGQTGRAEEAVKIFLDMQRSGIDP 369

Query: 548 DH 549
           DH
Sbjct: 370 DH 371


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/456 (45%), Positives = 298/456 (65%), Gaps = 5/456 (1%)

Query: 265 MAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
           MA+++F+ +  S++    ++MISGY+R G++E AR +FDQM+++DLV W+AMISGY++  
Sbjct: 1   MAQKLFTKIS-SRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESD 59

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
              +AL LF +M+  GI PD+VT+++V+ AC  LG LD  K +H  Y++    G  + + 
Sbjct: 60  KPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHM-YVDKNGLGGALPVN 118

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A+IDMYAKCG++  A  VF K+    + V  + S+I+  A HG    ++  F +M+   
Sbjct: 119 NALIDMYAKCGNLGAARGVFEKMQS--RNVISWTSMINAFAIHGDASNALKFFYQMKDEN 176

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEA 503
           +KP+GVTFV VL ACSH GLVEEG++ F SM N + I P+ EHYGCMVDL  R   L +A
Sbjct: 177 IKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDA 236

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
             L+++MP   N VIW +L+AAC++H   ++GE A +++L+LEPDH    V LSN+ A+ 
Sbjct: 237 LELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKD 296

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RW++  ++R LM   GI K  G S IE N  ++ F+ + K H Q  +I   L ++  +L
Sbjct: 297 RRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKEL 356

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
           K  GY PNT  V+ DV+EE K+ VV +HSEKLAL +GL+       IRI KNLR+C DCH
Sbjct: 357 KLVGYTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCH 416

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              KL+S++Y  EI+VRD  RFH +K G CSC D+W
Sbjct: 417 TFIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 137/269 (50%), Gaps = 23/269 (8%)

Query: 40  ISSSQLISFFALSGCKNGLFR---SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           ISS  L+   A+    + + R   +R++F Q++  ++  W+ ++ GY+ SD PQEAL L+
Sbjct: 9   ISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLF 68

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
           + M   GI  P+  T   V+++CARL        IH ++ K GL   L + NALI  Y+ 
Sbjct: 69  SEMQVFGI-KPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAK 127

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +  A  VFE   +R+++S+ ++IN +A   +   AL  F +M+D  I+P+  TFV +
Sbjct: 128 CGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGV 187

Query: 217 FSACTELNDPRIGKQFHAVV---------YKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
             AC+       G++  A +         +++ GC          +++++ +  L+  A 
Sbjct: 188 LYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGC----------MVDLFGRANLLRDAL 237

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +  TM ++ +   W S+++     G+ E
Sbjct: 238 ELVETMPLAPNVVIWGSLMAACQIHGENE 266



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 68/317 (21%)

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQV-------------------------------KEP 191
           A K+F    +R+LV    +I+GY++V                                +P
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             AL LF +MQ   I+PD  T +++ SAC  L      K  H  V KN   +G  + +  
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKN--GLGGALPVNN 119

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+I+MYAKCG +  A  VF  M  S++  +W+SMI+ +   G                  
Sbjct: 120 ALIDMYAKCGNLGAARGVFEKM-QSRNVISWTSMINAFAIHGDA---------------- 162

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
                          S AL+ F +M+   I P+ VT V VL AC   G ++ G+R     
Sbjct: 163 ---------------SNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASM 207

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
                          ++D++ +   +  AL +   +P     V ++ S+++    H  GE
Sbjct: 208 TNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPL-APNVVIWGSLMAACQIH--GE 264

Query: 432 TSIAVFREMELMGLKPD 448
             +  F   +++ L+PD
Sbjct: 265 NELGEFAAKQVLELEPD 281


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 347/622 (55%), Gaps = 42/622 (6%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           ML  GI  P+NFTFPF++ +C+ L  F+ G +IH  ++KFG +  +FI N+LI  Y    
Sbjct: 1   MLRLGI-QPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCD 59

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
               + +VF+    ++ VS++ +I    Q         LFR+M                 
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQM----------------- 102

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
             +E + P  G   +A     + CV S+        ++Y          RV    G+   
Sbjct: 103 -LSEGSRPSRGAILNA-----MACVRSH----EEADDVY----------RVVVENGLDFD 142

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
            +  S+    + R G++E AR+LFD +  +DLV+W   I  Y +     +AL L  +M  
Sbjct: 143 QSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMML 202

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            GI PD +T++ V+RAC  L +      +H        + + + + TA+ID+Y KCGS+ 
Sbjct: 203 QGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLT 262

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  VF  + +  + +  ++++ISG   HG G  ++ +F +M+   +KPD +TFV++L A
Sbjct: 263 YARKVFDGMQE--RNIITWSAMISGYGMHGWGREALNLFDQMK-ASVKPDHITFVSILSA 319

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV EG + F SM  ++G+ P+ EHY CMVD+L R G+LDEA   I+ MP   N+ 
Sbjct: 320 CSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAA 379

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL ACR+H N  + E+  + L DL+P +   YV+L N+   T + +EA  +R LM 
Sbjct: 380 VWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMK 439

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           + G++K  G+S IE    L+ F+A  +SHPQT  I   L+ +  +++  GY P+   V+ 
Sbjct: 440 NRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLH 499

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           DVDEE KE+++  HSEKLA+ FGL+N      IRI KNLR+CGDCH A K +S++  REI
Sbjct: 500 DVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREI 559

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRDA RFH FK G CSC D+W
Sbjct: 560 VVRDAHRFHHFKNGACSCRDYW 581



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 182/366 (49%), Gaps = 21/366 (5%)

Query: 14  LLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           ++++C  L+     ++IH  +V  G    +  S   S   + G  +    SR +F ++ +
Sbjct: 16  IIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISN--SLITMYGKCDKYELSRQVFDEMPD 73

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            N   W+ ++    + D  +E   L+  MLS+G   P+      +LN+ A + S +    
Sbjct: 74  KNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG-SRPSRGA---ILNAMACVRSHEEADD 129

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           ++  +++ GL+FD  +++A    ++  G +  A K+F+G +++DLV++ T I  Y +   
Sbjct: 130 VYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADM 189

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML-L 249
           P  AL L ++M    I PDA T + +  AC+ L   ++    H ++    G   + +L +
Sbjct: 190 PLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII--TTGFFYNQLLAV 247

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD--- 306
           +TA+I++Y KCG +  A +VF  M   ++   WS+MISGY   G    A  LFDQM    
Sbjct: 248 ETALIDLYVKCGSLTYARKVFDGM-QERNIITWSAMISGYGMHGWGREALNLFDQMKASV 306

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDE---VTMVAVL-RACVGLGAL 361
           + D +++ +++S  S  G  ++  E F  M    G+ P       MV +L RA     A 
Sbjct: 307 KPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEAC 366

Query: 362 DFGKRL 367
           DF +R+
Sbjct: 367 DFIERM 372



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 174/368 (47%), Gaps = 17/368 (4%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L  +   +S ++A  ++  +V +GL+   S  S     FA  G    +  +R LF  I
Sbjct: 113 AILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCG---RVEVARKLFDGI 169

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + ++  W T +  Y ++D P EAL L   M+ +GI  P+  T   V+ +C+ L+SF+  
Sbjct: 170 MSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIF-PDAITLLGVIRACSTLASFQLA 228

Query: 129 CQIHCHIIKFGLEFD--LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
             +H  II  G  ++  L +  ALI  Y   G +  A KVF+G   R++++++ +I+GY 
Sbjct: 229 HIVH-GIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYG 287

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  AL LF +M+ S ++PD  TFV++ SAC+       G +    + ++ G V   
Sbjct: 288 MHGWGREALNLFDQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFG-VTPR 345

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER----ARQLF 302
                 ++++  + G ++ A      M +  + A W +++        ++     AR LF
Sbjct: 346 PEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALF 405

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D +D  +   +  + + Y+  G   +A  +   M++ G+   ++   +V+     L A  
Sbjct: 406 D-LDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVK--KIAGYSVIEIKNKLYAFV 462

Query: 363 FGKRLHQQ 370
            G R H Q
Sbjct: 463 AGDRSHPQ 470


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/733 (33%), Positives = 395/733 (53%), Gaps = 54/733 (7%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           A+L  C  L+  LQ              SSS  I+ +A +G    L  +R +F +   P+
Sbjct: 7   AILRRCMMLQVRLQCT-----------TSSSYAIACYARNG---QLDHARKVFDETPLPH 52

Query: 73  IFI--WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
             +  WN ++  Y  +  P+EAL+L+  M  +  VS N      + N     +       
Sbjct: 53  RTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTM 112

Query: 131 IHCHIIKFGLEFDLFIRNALIH-----FYSIF-----------------GYINNAHKVFE 168
              +++ +      ++RN  +      F+ +                  G +++A K+F+
Sbjct: 113 PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFD 172

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
               +D+V+   +I GY +      A  LF +M     + +  T+ AM S         +
Sbjct: 173 MMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMP----KRNVVTWTAMVSGYARNGKVDV 228

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            ++   V+ +       N +  TA++  Y   G M  A  +F  M + K     + MI G
Sbjct: 229 ARKLFEVMPER------NEVSWTAMLLGYTHSGRMREASSLFDAMPV-KPVVVCNEMIMG 281

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           +   G++++AR++F  M +RD  +W+AMI  Y + G   +AL LF +M+  G+  +  ++
Sbjct: 282 FGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSL 341

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++VL  CV L +LD GK++H Q + +  F +++++ + +I MY KCG++  A  VF + P
Sbjct: 342 ISVLSVCVSLASLDHGKQVHAQLVRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRFP 400

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
             LK V ++NS+I+G +QHGLGE ++ VF +M   G+ PD VTF+ VL ACS+ G V+EG
Sbjct: 401 --LKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEG 458

Query: 469 KQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
            + FE+M   Y ++P +EHY C+VDLL R  +++EA  L++ MP + ++++W ALL ACR
Sbjct: 459 LELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACR 518

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
            H    + E+A +KL  LEP +   YVLLSNM A   RW +   +R+ +    + K PG 
Sbjct: 519 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGC 578

Query: 588 SYIEHNGTLHRFLA-SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
           S+IE    +H F     K HP+   I  ML+ +   L+ AGY P+   V+ DVDEEEK  
Sbjct: 579 SWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTH 638

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            + YHSEKLA+A+GL+       IR+ KNLR+CGDCH A KL++++  REI++RDA RFH
Sbjct: 639 SLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFH 698

Query: 707 LFKKGNCSCMDFW 719
            FK G+CSC D+W
Sbjct: 699 HFKDGHCSCKDYW 711



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 41/221 (18%)

Query: 4   LVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           L L   SL+++L  C    SL    Q+H Q+V S  +  +  +S LI+ +   G    L 
Sbjct: 334 LALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCG---NLV 390

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           R++ +F++    ++ +WN+++ GYS+    +EAL ++  M S G V P++ TF  VL++C
Sbjct: 391 RAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSG-VPPDDVTFIGVLSAC 449

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           +     K G +                         +F  +   ++V  G     +  Y 
Sbjct: 450 SYSGKVKEGLE-------------------------LFETMKCKYQVEPG-----IEHYA 479

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
            L++   +  +   A+ L  KM    ++PDA  + A+  AC
Sbjct: 480 CLVDLLGRADQVNEAMKLVEKMP---MEPDAIVWGALLGAC 517


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 334/554 (60%), Gaps = 18/554 (3%)

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK---- 230
           L+++N+L+   A+ + P  A   FR   D  + PD ++F  +  A T L           
Sbjct: 162 LLAHNSLLRALARGRRPHLAFGAFR---DLPLVPDNYSFTFLVRAATALAAAAASALDAA 218

Query: 231 ----QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
                 HA   ++ G  G +  +++  ++MYA  G +  A   F+ +  S      ++M+
Sbjct: 219 LIAGSVHASALRH-GHAG-DPHVQSGAVSMYAAAGDVGAARAAFAEI-ASPDVVCVTAMV 275

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                 G+ + AR+LFD M QRD V+W AMI+GY   G   +AL LF +M   G    EV
Sbjct: 276 GALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEV 335

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T+V+ L AC  LGAL+ GK +H     +     ++ L TA+IDMY+KCG++  A+ VF  
Sbjct: 336 TLVSALTACAQLGALERGKWVHS-CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDS 394

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           + +  + V  + S +SGLA +G+G   +A+F+ ME  G++P+GVTFV VL  CS  GLV+
Sbjct: 395 MGE--RNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVD 452

Query: 467 EGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+  F+SM  N+GI P +EHYGCMVDL  R GRLD+A   I  MP + +  +W ALL A
Sbjct: 453 EGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNA 512

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
            R+H+N ++G+ A  KL+ +E  + A +VLLSN+ A++  W+    VR +M   G++K P
Sbjct: 513 SRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVP 572

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S IE  G +H F    K+HP+ KEIE+ML +M  +L+  GY+ NT +V+FD++EE+KE
Sbjct: 573 GCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKE 632

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             +S HSEKLA+AFGL+       IRI KNLR+C DCH   K++S+++ REI++RD  RF
Sbjct: 633 DAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRF 692

Query: 706 HLFKKGNCSCMDFW 719
           H FK G CSC D+W
Sbjct: 693 HHFKDGACSCKDYW 706



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 34/266 (12%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+    A++   +  G  + A ++F+G   RD V++N +I GY        AL LF +M+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
            +       T V+  +AC +L     GK  H+  +     +  ++ L TA+I+MY+KCG 
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSR--GMRLSVTLGTALIDMYSKCGA 384

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A  VF +MG  ++   W+S +SG    G              RD             
Sbjct: 385 VAAAMEVFDSMG-ERNVYTWTSAVSGLAMNGM------------GRD------------- 418

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                  L LF +MES G+ P+ VT V VLR C   G +D G+        N      + 
Sbjct: 419 ------CLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLE 472

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIP 408
               ++D+Y + G +D A++    +P
Sbjct: 473 HYGCMVDLYGRAGRLDDAVNFINGMP 498



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 2/245 (0%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  +   +   WN ++ GY  +   +EAL L+  M   G  +    T    L +CA
Sbjct: 287 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAG-AAVGEVTLVSALTACA 345

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L + + G  +H      G+   + +  ALI  YS  G +  A +VF+    R++ ++ +
Sbjct: 346 QLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS 405

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
            ++G A        L LF++M+ + ++P+  TFV +   C+       G+     +  N 
Sbjct: 406 AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNH 465

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G +   +     ++++Y + G ++ A    + M +      W ++++       +E  + 
Sbjct: 466 G-IDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKY 524

Query: 301 LFDQM 305
             D++
Sbjct: 525 AMDKL 529


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 367/644 (56%), Gaps = 49/644 (7%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFA---LSGCKNG 57
           M +L     S+L     C +     Q    ++ SGL HH       +FF    L      
Sbjct: 1   MPKLATLRHSILCCFHKCGTFDHLNQTTSILITSGLAHH-------TFFLSDLLRSATKD 53

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  + +LF ++  P IF+WNT++R +S S  PQ  LV Y+ + + G++ P+  TFP +L 
Sbjct: 54  LGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVI-PDRHTFPLLLK 112

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           + ++L + ++  Q + HI+KFGL+FD F++N+L+  ++  GY++ + ++F  +  +D+VS
Sbjct: 113 AFSKLRN-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVS 171

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +  LING  +      AL  F +M+ S ++ D  T V++  A   L D   G+  H   Y
Sbjct: 172 WTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGF-Y 230

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
              G V  ++ + +A+++MY+KCG                                  + 
Sbjct: 231 VESGRVIWDVYVGSALVDMYSKCGY--------------------------------CDD 258

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A ++F++M  R+LVSW A+I+GY Q   + +AL++F +M   GI P++ T+ + L AC  
Sbjct: 259 AVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQ 318

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           LG+LD G+ LH+ Y++    G N  L TA++DMY+KCG +D AL VF K+P   K V  +
Sbjct: 319 LGSLDQGRWLHE-YVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPA--KDVYPW 375

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
            ++I+GLA  G   +S+ +F +M    ++P+GVTF+ VL AC+HGGLV+EG + F  M+ 
Sbjct: 376 TAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC 435

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +Y ++P ++HYGCMVDLL R GRL+EA   I+SMP +    +W AL + C +H+  ++GE
Sbjct: 436 DYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGE 495

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
             G  L+ L+P H   Y+LL+N+ +   +WE A  VR+LM   G+ K P  S+IE NG +
Sbjct: 496 HIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVI 555

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVD 640
           H F+A  KSH ++  + +ML  +T +LK A Y  ++  + F +D
Sbjct: 556 HEFIAFDKSHIESINVYMMLGSVTAQLKLATYALDSNLLTFTID 599


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 359/618 (58%), Gaps = 42/618 (6%)

Query: 106 SPNNFT-FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           SPN++  +  VL SC    S  +G Q+H  ++  GL  D  +   L+  Y+  G + +A 
Sbjct: 58  SPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHAR 117

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
           ++F+G   R++  +N LI  YA+      A+ L+R M D  ++PD FT+     AC  L 
Sbjct: 118 RLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALL 177

Query: 225 DPRIGKQFHAVVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
           D   G++ H  V   LG   G +M +   +++MYAKCG                      
Sbjct: 178 DLETGREVHERV---LGTHWGEDMFVCAGLVDMYAKCGC--------------------- 213

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                      ++ AR +FD++  RD V W +MI+ Y Q G   +AL L   M + G+ P
Sbjct: 214 -----------VDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGP 262

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
              T+V+ + A     AL  G+ LH  +     F R   L T+++DMYAK G +  A  +
Sbjct: 263 TIATLVSTISAAADAAALPRGRELHG-FGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVL 321

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHG 462
           F ++ K  + +  +N++I G   HG  + ++ +F +M +   + PD +TFV VL AC+HG
Sbjct: 322 FEQLMK--RELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHG 379

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           G+V+E K+FF  M++ Y IKP ++H+ C+VD+L   GR +EAY LI+ MP   +S IW A
Sbjct: 380 GMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGA 439

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL  C++H+N ++GE+A QKL++LEP+   +YVLLSN+ A++ +WE+A +VRKLM + G+
Sbjct: 440 LLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGL 499

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G S+IE  G  H FL    SHP++ EI   L+ +   +  AGY+P+T+ V  DV +
Sbjct: 500 KKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGD 559

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           +EK  ++  HSE+LA+AFGLI++ S   + +TKNLR+C DCH+  KL+S+I +REI++RD
Sbjct: 560 DEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRD 619

Query: 702 AIRFHLFKKGNCSCMDFW 719
             R+H F  G CSC D+W
Sbjct: 620 VNRYHHFVNGECSCKDYW 637



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 221/478 (46%), Gaps = 53/478 (11%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L+SC   +SL    Q+HG+++ SGL    + +++L+  +A  G    +  +R LF  +
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGL---VGHARRLFDGM 123

Query: 69  DNPNIFIWNTLMRGYSRSDSPQE-ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
              N+F+WN L+R Y+R D P E A+ LY  M+  G V P+NFT+P  L +CA L   ++
Sbjct: 124 PKRNVFLWNVLIRAYAR-DGPHEVAIQLYRGMVDYG-VEPDNFTYPLALKACAALLDLET 181

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G ++H  ++      D+F+   L+  Y+  G +++A  VF+    RD V +N++I  Y Q
Sbjct: 182 GREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQ 241

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
              P  AL L R M  + + P   T V+  SA  +      G++ H   ++         
Sbjct: 242 NGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRR--GFDRQD 299

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            LKT++++MYAK G + +A  +F  + M +   +W++MI GY   G              
Sbjct: 300 KLKTSLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGH------------- 345

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                             F +AL+LF KM     + PD +T V VL AC   G +   K 
Sbjct: 346 ------------------FDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKE 387

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
                ++       +   T ++D+    G  + A  +   +P    +  ++ ++++G   
Sbjct: 388 FFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDS-GIWGALLNGCKI 446

Query: 427 HG---LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           H    LGE ++    E+E      D   +V +    +  G  E+  +  + M N G+K
Sbjct: 447 HKNVELGELALQKLIELE----PEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLK 500


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/700 (34%), Positives = 380/700 (54%), Gaps = 45/700 (6%)

Query: 21  LKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           L +   +H +++ +     +  + LISF+A  G + GL  +R +F  +   N    N LM
Sbjct: 27  LSKGKALHARLITAAHFDVVLHNNLISFYAKCG-RVGL--ARTVFDAMPFRNAVSANLLM 83

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
            GY+ S   +E+L L   ++  G+   N +     +++ A + S+  G Q H + +K G 
Sbjct: 84  SGYASSGRHKESLQL-LRVVDFGM---NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGF 139

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
               ++ NA+++ Y    ++ +A KVFE     D  ++N++INGY    +   +L + R 
Sbjct: 140 AEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRN 199

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M     + D  ++VA+   C  + D  +G Q HA   K    +  N+ + +A+++MY KC
Sbjct: 200 MTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKR--LELNVYVGSALVDMYGKC 257

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
             ++ A R F  +                                 ++++VSWTA+++ Y
Sbjct: 258 DHVHDANRAFEVL--------------------------------PEKNVVSWTAVMTAY 285

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +Q   +  AL+LF  ME  G+ P+E T    L +C GL AL  G  L    ++   +  +
Sbjct: 286 TQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWD-H 344

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + ++ A+++MY+K GSI+ A  VF  +P  L+ V  +N II+G A HGL    +  F  M
Sbjct: 345 LLVSNALMNMYSKSGSIEDAHRVFISMP--LRDVVSWNLIITGYAHHGLAREGMEAFHSM 402

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGR 499
               + P  VTFV VL AC+  GLV+E   +  +M+   GI P  EHY CMV LL R GR
Sbjct: 403 LSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGR 462

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           LDEA   I +     + V WR+LL +C++++N  +G    +++L LEP     YVLLSNM
Sbjct: 463 LDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNM 522

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A+  RW+   +VRK M +  ++K PG S+I     +H F + +K HPQ  +I   L+++
Sbjct: 523 YAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEEL 582

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             ++K+ GYVPN   V+ D+D+E KE  + YHSEKLALAFGLI++    TI I KNLRIC
Sbjct: 583 IDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRIC 642

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH+A KL+S +  R+I+VRDA+RFH  + G CSC D+W
Sbjct: 643 DDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/725 (32%), Positives = 390/725 (53%), Gaps = 70/725 (9%)

Query: 10   SLLALLESCKSLKQALQIHGQIVHSGL----NHHISSSQLISFFALSGCKNGLFRSRILF 65
            S +A+L +C +  +AL   G+ +HS +      ++ SS      ++ G    +  + ++F
Sbjct: 439  SFIAILNACSN-SEALDF-GRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVF 496

Query: 66   SQIDNPN--IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC---- 119
             ++  P+  +  WN ++  Y+++D  +EA      ML  G++ P+  +F  VL+SC    
Sbjct: 497  KEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL-PDALSFTSVLSSCYCSQ 555

Query: 120  ----ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
                 R+   +SG +  C            +  ALI  +     +  A  VF+     D+
Sbjct: 556  EAQVLRMCILESGYRSAC------------LETALISMHGRCRELEQARSVFDEMDHGDV 603

Query: 176  VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
            VS+  +++  A+ ++      LFR+MQ   + PD FT       C +     +GK  HA 
Sbjct: 604  VSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHAC 663

Query: 236  VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            V + +G + +++ ++ A++NMY+ CG                    W   +S        
Sbjct: 664  VTE-IG-LEADIAVENALLNMYSNCG-------------------DWREALS-------- 694

Query: 296  ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
                  F+ M  RDLVSW  M + Y+Q G   +A+ LF  M+  G+ PD++T    L   
Sbjct: 695  -----FFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVS 749

Query: 356  VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             G   +  GK  H    E+ +   ++ + T ++ +YAKCG +D A+S+F    +   TV 
Sbjct: 750  GGSALVSDGKLFHGLAAESGL-DSDVSVATGLVKLYAKCGKLDEAISLFRGACQ--WTVV 806

Query: 416  LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            L N+II  LAQHG  E ++ +F +M+  G++PD  T V+++ AC H G+VEEG   F +M
Sbjct: 807  LLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTM 866

Query: 476  LNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              Y GI P +EHY C VDLL R G+L+ A  +I+ MP++ N+++W +LL  C+L  +A++
Sbjct: 867  KEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAEL 926

Query: 535  GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            GE   Q++L+L+P + A +V+LSN+   T +W++A   RK + D  ++  PG S++E   
Sbjct: 927  GERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGK 986

Query: 595  TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
             +H F+A  +SHPQT EI ++L  + + ++ AGY  +      D ++E KE  + YHSE+
Sbjct: 987  QVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGYEADK---GLDAEDELKEKALGYHSER 1043

Query: 655  LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
            +A+AFGLI +    T++I KNLR+CGDCH A K +S I  REI+VRD++RFH F  G CS
Sbjct: 1044 IAIAFGLIATPPDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCS 1103

Query: 715  CMDFW 719
            C D W
Sbjct: 1104 CKDCW 1108



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 160/581 (27%), Positives = 273/581 (46%), Gaps = 55/581 (9%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           ALL+SC     L +  + H  I ++GL  H+   + LI+ +   G    L  +  +FS++
Sbjct: 30  ALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCG---SLEEAHAIFSKM 86

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +  N+  W  L+   ++S +   A  L+ +ML +   +PN++T   +LN+CA       G
Sbjct: 87  EERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 129 CQIHCHIIKFGLEFD----LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             IH  I + GLE +      + NA+I+ Y+  G   +A  VF     +D+VS+  +   
Sbjct: 147 RSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGA 206

Query: 185 YAQVKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           YAQ +   P AL +FR+M    + P+  TF+    ACT L D   G   H+++++    +
Sbjct: 207 YAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHE--AGL 261

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G + L   A+INMY KCG    A  VF  M                        +RQ   
Sbjct: 262 GFDPLAGNALINMYGKCGDWEGAYGVFKAMA-----------------------SRQ--- 295

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
              + DLVSW AMIS   + G    A+ +F ++   G+ P+ VT++ +L A    G +DF
Sbjct: 296 ---ELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDF 351

Query: 364 G--KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G  ++ H +  E+    R++ +  A+I MYAKCG    A +VF +I      +S +N+++
Sbjct: 352 GAARKFHGRIWESGYL-RDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVIS-WNTML 409

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
                       +  F  M L G+ P+ V+F+ +L ACS+   ++ G++    +L     
Sbjct: 410 GASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRD 469

Query: 482 PQMEHYGCM-VDLLARDGRLDEAYGLIQSMPYDANS-VIWRALLAACRLHRNAKIGEIAG 539
                   M V +  + G + EA  + + MP  + S V W  +L A    +N +  E  G
Sbjct: 470 YVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA--YAQNDRSKEAFG 527

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
             +  L+       +  +++L+  Y  +EA+ +R  + +SG
Sbjct: 528 ALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESG 568



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 136/546 (24%), Positives = 249/546 (45%), Gaps = 76/546 (13%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQL-----ISFFALSGCKNGLFRS 61
           +L+A+L +C   + L     IH  I   GL    +++ L     I+ +A  G        
Sbjct: 129 TLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAI-- 186

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
             +F  I   ++  W  +   Y++      +AL ++  ML + + +PN  TF   L +C 
Sbjct: 187 -AVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL-APNVITFITALGAC- 243

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR---DLVS 177
             +S + G  +H  + + GL FD    NALI+ Y   G    A+ VF+   +R   DLVS
Sbjct: 244 --TSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVS 301

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN-DPRIGKQFHAVV 236
           +N +I+   +      A+ +FR+++   ++P++ T + + +A      D    ++FH  +
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRI 361

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
           +++ G +  ++++  A+I+MYAKCG  + A  VF  +        W              
Sbjct: 362 WES-GYL-RDVVVGNAIISMYAKCGFFSAAWTVFRRI-------RWKC------------ 400

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                       D++SW  M+        F + +  F  M   GI P++V+ +A+L AC 
Sbjct: 401 ------------DVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACS 448

Query: 357 GLGALDFGKRLH-------QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
              ALDFG+++H       + Y+E+ V        T ++ MY KCGSI  A  VF ++P 
Sbjct: 449 NSEALDFGRKIHSLILTRRRDYVESSV-------ATMLVSMYGKCGSIAEAELVFKEMPL 501

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL--CACSHGGLVEE 467
             +++  +N ++   AQ+   + +     EM   G+ PD ++F +VL  C CS     +E
Sbjct: 502 PSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS-----QE 556

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
            +     +L  G +        ++ +  R   L++A  +   M +  + V W A+++A  
Sbjct: 557 AQVLRMCILESGYRSACLETA-LISMHGRCRELEQARSVFDEMDH-GDVVSWTAMVSATA 614

Query: 528 LHRNAK 533
            +R+ K
Sbjct: 615 ENRDFK 620


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/710 (34%), Positives = 388/710 (54%), Gaps = 51/710 (7%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           ++++  I++   +G   G   +R  F  +       +N L+ GY R+  P  AL L+  M
Sbjct: 18  VAANARIAWLVRAGNIEG---ARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRM 74

Query: 100 LSKGIVSPNNFTFPFVL------NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH- 152
            S+ + S N       L      ++ A L+S      +   ++ F      ++R+ L+  
Sbjct: 75  PSRDLGSYNALIAGLSLRRHTLPDAAAALASIP----LPPSVVSFTSLLRGYVRHGLLAD 130

Query: 153 --------------FYSIF-------GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
                          Y++        G +N A K+F+    +D+V+   +++GY Q    
Sbjct: 131 AIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRI 190

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
             A  LF +M     + +  ++ AM S   +     + ++   V+         N +  T
Sbjct: 191 TEARALFDEMP----KRNVVSWTAMISGYAQNGKVILARKLFEVMPDR------NEVSWT 240

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A++  Y + G +  AE +F+ M      AA ++M+ G+ + G ++ A+ +F++M  RD  
Sbjct: 241 AMLVGYIQAGHVEDAEDLFNAMP-DHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG 299

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           +W+AMI  Y Q     +AL  F +M   GI P+  + +++L  C  L   D+G+ LH   
Sbjct: 300 TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM 359

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +    F  ++F  +A+I MY KCG++D A  VF       K V ++NS+I+G AQHGLGE
Sbjct: 360 LR-CSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEP--KDVVMWNSMITGYAQHGLGE 416

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCM 490
            ++ +F ++ L  + PDG+T++ VL ACS+ G V+EG++ F SM +N  I+    HY CM
Sbjct: 417 EALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCM 476

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G +DEA  LI +MP + +++IW AL+ ACR+H+NA+I E+A +KLL+LEP   
Sbjct: 477 VDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSA 536

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK-SHPQT 609
             YVLLS++   T RWE+A  +RK +    + K PG S+IE+N  +H F +    SHP+ 
Sbjct: 537 GPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEH 596

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
             I  ML+++   L  +GY  +   V+ DVDEE+K   + YHSE+ A+A+GL+   +   
Sbjct: 597 AIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMP 656

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IR+ KNLR+CGDCH A KL+++I  REI++RDA RFH FK G CSC D+W
Sbjct: 657 IRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 113/286 (39%), Gaps = 53/286 (18%)

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           M +    F     + +  A ++ I+   R G IE AR  FD M  R   S+ A+I+GY +
Sbjct: 1   MRLPSVRFLPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFR 60

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                 AL LF +M S              R      AL  G  L +  + +        
Sbjct: 61  NHLPDAALGLFHRMPS--------------RDLGSYNALIAGLSLRRHTLPD-------- 98

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
                            A +    IP     VS F S++ G  +HGL   +I +F +M  
Sbjct: 99  -----------------AAAALASIPLPPSVVS-FTSLLRGYVRHGLLADAIRLFHQMP- 139

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
              + + VT+  +L      G V E ++ F+ M +  +  +      M+    + GR+ E
Sbjct: 140 ---ERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVART----AMLSGYCQAGRITE 192

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           A  L   MP   N V W A+++     +N K+  I  +KL ++ PD
Sbjct: 193 ARALFDEMP-KRNVVSWTAMISG--YAQNGKV--ILARKLFEVMPD 233


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 323/547 (59%), Gaps = 38/547 (6%)

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           D  S NT++  +A    P  AL L R+       PD  T+  +  AC  L   R G+  H
Sbjct: 89  DPFSLNTVLRIFASSARPRVALALHRR---HLAPPDTHTYPPLLQACARLLALRYGEGLH 145

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A   KN G V S + +K +++++Y  CGL   A RVF  +                    
Sbjct: 146 AEACKN-GLV-SLVFVKNSLVHLYGACGLFESAHRVFDEI-------------------- 183

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                        +R+LVSW ++++G++  G  ++ L +F +M  +   PD  T+V+VL 
Sbjct: 184 ----------PPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLT 233

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  +G L  G+R+H  ++  V    N     A+ID+YAKCG +D A  +F ++    +T
Sbjct: 234 ACAEIGVLALGRRVHV-FVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVG-RT 291

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + S+I GLA +G G  ++ +F  ME   L P  +T V VL ACSH GLV++G ++F+
Sbjct: 292 VVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFD 351

Query: 474 SM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M   YGI P++EH GCMVDLL R GR++EA+  I +MP + N+V+WR LL AC +H+  
Sbjct: 352 QMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKL 411

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           +IGE A  +L++L+P H   YVLLSN+ A   RW +   +RK M   G++K PG S +E 
Sbjct: 412 EIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVEL 471

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
             +++ F+   +SHP+T +I  ML D+  +L+  GY+P+T  V+ D+++EEKE+ ++YHS
Sbjct: 472 RNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHS 531

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LA+AF L+ S     IRI KNLR+CGDCH+A KL+S++Y REI+VRD  RFH FK G 
Sbjct: 532 ERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGA 591

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 592 CSCKDYW 598



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 213/442 (48%), Gaps = 49/442 (11%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGL----NHHISSSQLISFFALSGCKNGLFRSRILF 65
           +LL L  +  SL  A Q+H + + +      +H + +  L+   A        +   +L 
Sbjct: 23  ALLRLHLASPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLS 82

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             + +P+ F  NT++R ++ S  P+ AL L+   L+     P+  T+P +L +CARL + 
Sbjct: 83  GLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLA----PPDTHTYPPLLQACARLLAL 138

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNTLIN 183
           + G  +H    K GL   +F++N+L+H Y   G   +AH+VF+      R+LVS+N+++N
Sbjct: 139 RYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLN 198

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+A    P   L +FR+M +    PD FT V++ +AC E+    +G++ H  V K +G V
Sbjct: 199 GFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAK-VGLV 257

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G N     A+I++YAKCG ++ A ++F  MG+ ++  +W+S+I G               
Sbjct: 258 G-NAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLA------------- 303

Query: 304 QMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                              V GF   AL+LF  ME   + P E+TMV VL AC   G +D
Sbjct: 304 -------------------VNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVD 344

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G R   Q          I     ++D+  + G ++ A +    +P     V ++ +++ 
Sbjct: 345 DGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAV-VWRTLLG 403

Query: 423 GLAQHG---LGETSIAVFREME 441
             A H    +GE + A   E++
Sbjct: 404 ACAMHKKLEIGEAAWARLVELD 425


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/727 (35%), Positives = 390/727 (53%), Gaps = 59/727 (8%)

Query: 6   LEHSSLLALLES-----CKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNG 57
           L  +SL +L+ES     C  L +A   H QI+ + L++ + S   + L++ ++     N 
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRA--AHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNS 60

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
              +++L S   N ++  W  L+ G  ++     AL  +++M    I  PN+FTFP    
Sbjct: 61  ---AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI-QPNDFTFPCAFK 116

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +   L S   G Q+H   +K G   D+F+  +    YS  G    A K+F+    R++ +
Sbjct: 117 ASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N  ++          AL  F + +    +P+  TF A  +AC   +  R+G+Q H  V 
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVL 236

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK-STAAWSSMISGYTREGKIE 296
           ++     +++ +   +I+ Y KC  +  +E +FS  G+SK +  +W SMI  Y +  + E
Sbjct: 237 QS--GFEADVSVANGLIDFYGKCHQVGCSEIIFS--GISKPNDVSWCSMIVSYVQNDEEE 292

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
           +A  +F                             L  + E  GI P +  + +VL AC 
Sbjct: 293 KACLVF-----------------------------LRARKE--GIEPTDFMVSSVLSACA 321

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVS 415
           GL  L+ GK +H   ++  V G NIF+ +A++DMY KCGSI+ A   F ++P +NL T  
Sbjct: 322 GLSVLEVGKSVHTLAVKACVVG-NIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVT-- 378

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMG--LKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
            +N++I G A  G  + ++ +F EM      + P+ VTFV VL ACS  G V  G + FE
Sbjct: 379 -WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFE 437

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM   YGI+P  EHY C+VDLL R G +++AY  I+ MP      +W ALL A ++   +
Sbjct: 438 SMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKS 497

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
           ++G++A   L +L+P    ++VLLSNM A   RWEEA  VRK M D GI+K  G S+I  
Sbjct: 498 ELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITA 557

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
              +H F A   SH +  EI+ ML  +  ++++AGY+P+T   +FD++EEEK   V YHS
Sbjct: 558 GNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHS 617

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           EK+ALAFGLI+  +   IRITKNLRICGDCH A K +S I  REI+VRD   FH F+   
Sbjct: 618 EKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQ 677

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 678 CSCRDYW 684


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 385/676 (56%), Gaps = 60/676 (8%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           L  ++ +  ++L++C+++    +IH   +  G    +  +   S   L      +  +RI
Sbjct: 82  LTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAA--SLIHLYSRYKAVGNARI 139

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WN ++ GY +S + +EAL L     S G+ + ++ T   +L++C    
Sbjct: 140 LFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAG 194

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
            F  G  IH + IK GLE +L               + +  KVF+    RDL+S+N++I 
Sbjct: 195 DFNRGVTIHSYSIKHGLESEL---------------LRDCQKVFDRMYVRDLISWNSIIK 239

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            Y   ++P  A+ LF++M+ S IQPD  T +++ S  ++L D R  +       +  G  
Sbjct: 240 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK-GWF 298

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             ++ +  AV+ MYAK GL                                ++ AR +F+
Sbjct: 299 LEDITIGNAVVVMYAKLGL--------------------------------VDSARAVFN 326

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALD 362
            +   D++SW  +ISGY+Q G  S+A+E++  ME  G I  ++ T V+VL AC   GAL 
Sbjct: 327 WLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALR 386

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G +LH + ++N ++  ++F+ T++ DMY KCG ++ ALS+FY+IP+ + +V  +N++I+
Sbjct: 387 QGMKLHGRLLKNGLY-LDVFVVTSLADMYGKCGRLEDALSLFYQIPR-VNSVP-WNTLIA 443

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIK 481
               HG GE ++ +F+EM   G+KPD +TFVT+L ACSH GLV+EG+  FE M  +YGI 
Sbjct: 444 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGIT 503

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P ++HYGCMVD+  R G+L+ A   I+SM    ++ IW ALL+ACR+H N  +G+IA + 
Sbjct: 504 PSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEH 563

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           L ++EP+H  ++VLLSNM A   +WE   ++R +    G++K PGWS +E +  +  F  
Sbjct: 564 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYT 623

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
             ++HP  +E+   L  +  KLK  GYVP+   V+ DV+++EKE ++  HSE+LA+AF L
Sbjct: 624 GNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFAL 683

Query: 662 INSRSKETIRITKNLR 677
           I + +K TIRI KNLR
Sbjct: 684 IATPAKTTIRIFKNLR 699



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 241/498 (48%), Gaps = 66/498 (13%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTS-MLSKGIVSPNNFTFPFVLNSCARLS 123
           F  I N +++ WN ++ GY R+ +  E +  ++  MLS G+ +P+  TFP VL +C    
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGL-TPDYRTFPSVLKAC---R 97

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G +IHC  +KFG  +D+++  +LIH YS +  + NA  +F+    RD+ S+N +I+
Sbjct: 98  TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 157

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY Q      AL L   ++      D+ T V++ SACTE  D   G   H+   K+    
Sbjct: 158 GYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKH---- 209

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER-ARQLF 302
                            GL                             E ++ R  +++F
Sbjct: 210 -----------------GL-----------------------------ESELLRDCQKVF 223

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D+M  RDL+SW ++I  Y       +A+ LF +M    I PD +T++++      LG + 
Sbjct: 224 DRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIR 283

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
             + +    +    F  +I +  AV+ MYAK G +D+A +VF  +P N   +S +N+IIS
Sbjct: 284 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTDVIS-WNTIIS 341

Query: 423 GLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           G AQ+G    +I ++  ME  G +  +  T+V+VL ACS  G + +G +    +L  G+ 
Sbjct: 342 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 401

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
             +     + D+  + GRL++A  L   +P   NSV W  L+A    H + +   +  ++
Sbjct: 402 LDVFVVTSLADMYGKCGRLEDALSLFYQIPR-VNSVPWNTLIACHGFHGHGEKAVMLFKE 460

Query: 542 LLD--LEPDHGAHYVLLS 557
           +LD  ++PDH     LLS
Sbjct: 461 MLDEGVKPDHITFVTLLS 478


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 375/682 (54%), Gaps = 54/682 (7%)

Query: 45  LISFFALSGCKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG 103
           LI  FA    KNG L   R +F  +    + +W  L+  Y++S    EA+ L+  ML  G
Sbjct: 195 LIDMFA----KNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENG 250

Query: 104 IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF---GYI 160
              P+ +T   +L++C  L SF+ G Q+H   ++ GLE D  +   L+  Y+       +
Sbjct: 251 F-QPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSL 309

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQV-KEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +NA +VF      +++++  L++GY Q   +    + LF KM +  I+P+  T+ +M  A
Sbjct: 310 HNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKA 369

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C  L D   G+Q H        CV SN+     V N                        
Sbjct: 370 CANLGDQDSGRQIHT------HCVKSNLADLNVVGN------------------------ 399

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
               +++S Y   G IE AR  FDQ+ ++++VS++  + G     G S   + + ++E +
Sbjct: 400 ----ALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG----DGRSNTYQDY-QIERM 450

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
            +     T  +++ A   +G L  G+RLH   ++   FG +  +  +++ MY++CG +  
Sbjct: 451 ELGISTFTFGSLISAAASVGMLTKGQRLHALSLK-AGFGSDRAIGNSLVSMYSRCGYLVD 509

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           A  VF ++  N   V  + S+ISGLA+HG    ++ +F +M   G+KP+ VT++ VL AC
Sbjct: 510 ACQVFDEM--NDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSAC 567

Query: 460 SHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           SH GLV+EGK+ F  M  ++G+ P+MEHY CMVDLL R G +++A   I  MP   ++++
Sbjct: 568 SHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALV 627

Query: 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578
           W+ LL AC+ H N  IGEIA   ++ LEP   A YVLLSN+ AE   W++  ++R LM D
Sbjct: 628 WKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRD 687

Query: 579 SGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFD 638
             + K  G S++  + T+H F A   SHPQ +EI   L+ +  ++K  GYVP+T  V+ D
Sbjct: 688 KNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHD 747

Query: 639 VDEEEKETVVSYHSEKLALAFGLIN-SRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           + +E KE  +  HSEK+A+AFGLI+ + + + IRI KNLR+C DCH A K +S+   REI
Sbjct: 748 MSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREI 807

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           ++RD+ RFH  K G CSC ++W
Sbjct: 808 ILRDSNRFHRMKDGECSCGEYW 829



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 219/464 (47%), Gaps = 50/464 (10%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK-SGCQ 130
           ++  W  +    SR+ +  EAL L+   L +G++ PN FT      +C     F  +G  
Sbjct: 116 DLVSWTAMASCLSRNGAEAEALRLFGETLEEGLL-PNAFTLCAATQACFASELFHLAGGA 174

Query: 131 IHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           +   + K G    D+ +  ALI  ++  G +    +VF+G   R +V +  LI  YAQ  
Sbjct: 175 VLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSG 234

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ LF  M ++  QPD +T  +M SACTEL   R+G+Q H++  + LG + S+  +
Sbjct: 235 YSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALR-LG-LESDSCV 292

Query: 250 KTAVINMYAKC---GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
              +++MYAK      ++ A  VF+ M    +  AW++++SGY + G  +          
Sbjct: 293 SCGLVDMYAKSHNGQSLHNAREVFNRMP-KHNVMAWTALLSGYVQRGSQD---------- 341

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                               +Q + LF KM + GI P+ +T  ++L+AC  LG  D G++
Sbjct: 342 --------------------NQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQ 381

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLA 425
           +H   +++ +   N+ +  A++ MYA+ GSI+ A   F ++  KN+  VS   ++     
Sbjct: 382 IHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQLYEKNM--VSFSGNL----- 433

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
             G G ++     ++E M L     TF +++ A +  G++ +G++     L  G      
Sbjct: 434 -DGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRA 492

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
               +V + +R G L +A  +   M  D N + W ++++    H
Sbjct: 493 IGNSLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLAKH 535



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 183/402 (45%), Gaps = 42/402 (10%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+L+      S +   Q+H   +  GL +    S  L+  +A S     L  +R +F++
Sbjct: 259 SSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNR 318

Query: 68  IDNPNIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +   N+  W  L+ GY  R     + ++L+  ML++GI  PN+ T+  +L +CA L    
Sbjct: 319 MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGI-RPNHITYSSMLKACANLGDQD 377

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           SG QIH H +K  L     + NAL+  Y+  G I  A   F+    +++VS++  ++G  
Sbjct: 378 SGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDG 437

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
             +      +   +M+   +    FTF ++ SA   +     G++ HA+  K     GS+
Sbjct: 438 --RSNTYQDYQIERME---LGISTFTFGSLISAAASVGMLTKGQRLHALSLK--AGFGSD 490

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +  ++++MY++CG +  A +VF  M    +  +W+SMISG  + G   R         
Sbjct: 491 RAIGNSLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLAKHGYAAR--------- 540

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                 ALELF  M + G+ P++VT +AVL AC   G +  GK 
Sbjct: 541 ----------------------ALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKE 578

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
             +   ++      +     ++D+  + G ++ AL    ++P
Sbjct: 579 HFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMP 620



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 186/386 (48%), Gaps = 47/386 (12%)

Query: 128 GCQIHCHIIKFG--LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLIN 183
           G  +  H+++ G  LE D  + N+L+  YS    +  A  VF+G     RDLVS+  + +
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC--TELNDPRIGKQFHAVVYKNLG 241
             ++      AL LF +  +  + P+AFT  A   AC  +EL     G     +V+K LG
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFH-LAGGAVLGLVFK-LG 183

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
             G+++ +  A+I+M+AK                                 G +   R++
Sbjct: 184 FWGTDVSVGCALIDMFAK--------------------------------NGDLVAMRRV 211

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           FD + +R +V WT +I+ Y+Q G   +A+ELF  M   G  PD+ T+ ++L AC  LG+ 
Sbjct: 212 FDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSF 271

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC---GSIDTALSVFYKIPKNLKTVSLFN 418
             G++LH   +  +    +  ++  ++DMYAK     S+  A  VF ++PK+   V  + 
Sbjct: 272 RLGQQLHSLALR-LGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKH--NVMAWT 328

Query: 419 SIISGLAQHGLGETSIAV-FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           +++SG  Q G  +  + + F +M   G++P+ +T+ ++L AC++ G  + G+Q     + 
Sbjct: 329 ALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVK 388

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEA 503
             +         +V + A  G ++EA
Sbjct: 389 SNLADLNVVGNALVSMYAESGSIEEA 414


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/728 (32%), Positives = 392/728 (53%), Gaps = 59/728 (8%)

Query: 2   KRLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNG 57
           KR   +    + +++SC    +L +  +IH  I   GL   +  S+ L+  +   G    
Sbjct: 28  KRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCG---S 84

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           L  +R++F      N+F W  L+   ++    QEAL L+  ML +GI  P++ +F   +N
Sbjct: 85  LEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGI-QPHSVSFTAAIN 143

Query: 118 SCARLSSF-KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLV 176
           +C+    F  +G  +H  + ++G +  +    +L+  YS  G +  + K FE     + V
Sbjct: 144 ACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAV 203

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           S+N +I  +A+ +    AL   +KM    I+  + T++ + SA  + +  +  +  H  +
Sbjct: 204 SWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCI 263

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +     G +  +   ++NMY KCG +  AE +F +                        
Sbjct: 264 LRT----GFDQDVVNVILNMYGKCGCLQDAEAMFKS------------------------ 295

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                   M Q D+++W  MI+ YSQ G  S+AL  +  M+  G+ PD+ T V+V+ AC 
Sbjct: 296 --------MSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACA 347

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIF----LTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            LG ++ GK++H++       G   F    L  ++++MY KCG +D A S+F K  K   
Sbjct: 348 TLGDMEVGKQVHRR------LGDRAFQVTELANSLVNMYGKCGILDVARSIFDKTAKGSV 401

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           T   +N++I   AQH   + +  +F  M L G +P  +TF++VL AC++ GL EE   +F
Sbjct: 402 T---WNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYF 458

Query: 473 ESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
             M  ++G++P   HYGCMV+ L + GRL +A  LIQ MP++ + + W + LA CR H +
Sbjct: 459 VCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGD 518

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            K G+ A +  + ++P+    YV L+ + A+   ++EA ++RKLM D GI+K  G S I+
Sbjct: 519 MKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIK 578

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
              +++ F A  +S+P++KEI   LK +  ++K AGY P+   V  DV+  +KE ++  H
Sbjct: 579 LGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAH 638

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SE+LA+AFG+I++     +RI KNLR+CGDCH   KL S+I RREI+VRD+ RFH FK G
Sbjct: 639 SERLAIAFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNG 698

Query: 712 NCSCMDFW 719
           +CSC DFW
Sbjct: 699 SCSCKDFW 706


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/514 (41%), Positives = 316/514 (61%), Gaps = 7/514 (1%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           +PD FTF  +  +   L+   +  Q HA++ K LG   ++     A++  Y      ++A
Sbjct: 98  RPDHFTFPQILPSAQPLH---LVAQLHALLLK-LG-FHAHTQSLNALLAAYLANARPDLA 152

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
            RVF   G +    +W++M+ G  + G  + AR LFD M +R+LVSW AM+SGY +   F
Sbjct: 153 SRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRF 212

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
             ALE+F +M + G+  +       + AC G GAL  G+ +H+ ++E      +  L TA
Sbjct: 213 LDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHR-WVEQSGIQMDEKLATA 271

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           V+DMY KCG ++ A  VF  +P   K ++ +N +I G A HG GE ++ +F  ME  G+ 
Sbjct: 272 VVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVA 331

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           PD VT V VL AC+H G++ EG+ +F  +   YGI+P+MEHYGCMVDL  R GRL+EA  
Sbjct: 332 PDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKK 391

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
           +IQ MP + +  +  AL  A ++H +  +GE  G ++++L+P +   YVLL+N+LA   R
Sbjct: 392 VIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGR 451

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           WE+  +VR+LMD+  + K  G S IE  G +  F      HP+ +E+  M +DM  ++++
Sbjct: 452 WEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRA 511

Query: 626 AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLA 685
            GYVP+T  V+  + EEEKET + YHSEKLA+AFGL+++R  +T+RITKNLR+C DCH A
Sbjct: 512 EGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEA 571

Query: 686 FKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            K +S ++ R+I+VRD  RFH FK G CSC D+W
Sbjct: 572 TKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 179/444 (40%), Gaps = 80/444 (18%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q H Q++  G+  H + + +L+SF A     +  + SR+L    D P+  ++N L     
Sbjct: 23  QHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYASRLLAHHPD-PHPALFNPLF---- 77

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE--- 141
            S  P        +++    + P++FTFP +L S   L       Q+H  ++K G     
Sbjct: 78  -SALPTRHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLV---AQLHALLLKLGFHAHT 133

Query: 142 -----------------------------FDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
                                         D+     ++      G  ++A  +F+G   
Sbjct: 134 QSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPE 193

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R+LVS+N +++GY +      AL +F +M+   +  + F       ACT       G++ 
Sbjct: 194 RNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREV 253

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM-SKSTAAWSSMISGYTR 291
           H  V ++   +  +  L TAV++MY KCG +  A RVF  + + +K    W+ MI G+  
Sbjct: 254 HRWVEQS--GIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAV 311

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+ E                                AL+LFG+ME  G+ PD+VT+V V
Sbjct: 312 HGRGE-------------------------------DALKLFGRMEREGVAPDDVTLVNV 340

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC   G L  G+       +       +     ++D+Y + G ++ A  V   +P   
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME- 399

Query: 412 KTVSLFNSIISGLAQHG---LGET 432
             V +  ++      HG   LGE 
Sbjct: 400 PDVGVLGALFGASKIHGDVDLGEA 423


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/666 (36%), Positives = 368/666 (55%), Gaps = 44/666 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +   P+   +NTL+ GY+ +     A+VL+  M   G    + FT   ++ +C 
Sbjct: 93  ARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGF-EVDGFTLSGLIAACC 151

Query: 121 -RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLVSY 178
            R+   K   Q+HC  +  G +    + NA + +YS  G +  A  VF G    RD VS+
Sbjct: 152 DRVDLIK---QLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSW 208

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N++I  Y Q KE   AL L+++M     + D FT  ++ +A T L+    G+QFH  + K
Sbjct: 209 NSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIK 268

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                  N  + + +I+ Y+KCG  +         GMS S                    
Sbjct: 269 --AGFHQNSHVGSGLIDFYSKCGGRD---------GMSDS-------------------- 297

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQ-ALELFGKMESLGIHPDEVTMVAVLRACVG 357
            ++F ++   DLV W  MISGYS     S+ A++ F +M+ +G  PD+ + V V  AC  
Sbjct: 298 EKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L +   GK++H   I++ +    I +  A+I +Y K G++  A  VF ++P+ L  VS F
Sbjct: 358 LSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPE-LNAVS-F 415

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
           N +I G AQHG G  ++ +++ M   G+ P+ +TFV +L AC+H G V+EG+++F +M  
Sbjct: 416 NCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKE 475

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            + I+P+ EHY CM+DLL R G+L+EA   I +MPY   SV W ALL ACR H+N  + E
Sbjct: 476 TFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAE 535

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A ++L+ ++P     YV+L+NM A+  +WEE   VRK M    I+K PG S+IE     
Sbjct: 536 RAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKK 595

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV---VSYHSE 653
           H F+A   SHP  +E+   L++M  K+K  GYV +    +   DE  +      + +HSE
Sbjct: 596 HVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSE 655

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGL+++R  E I + KNLRICGDCH A K +S +  REI+VRD +RFH FK G C
Sbjct: 656 KLAVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKC 715

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 716 SCGDYW 721



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 223/475 (46%), Gaps = 51/475 (10%)

Query: 18  CKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFI 75
           C  +    Q+H   V  G + + S ++  +++++    K GL R  + +F  +D     +
Sbjct: 151 CDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYS----KGGLLREAVSVFYGMDGLRDEV 206

Query: 76  -WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            WN+++  Y +     +AL LY  M+ KG    + FT   VLN+   L     G Q H  
Sbjct: 207 SWNSMIVAYGQHKEGAKALALYKEMIFKGF-KIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 135 IIKFGLEFDLFIRNALIHFYSIFG---YINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           +IK G   +  + + LI FYS  G    ++++ KVF+  L+ DLV +NT+I+GY+  +E 
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEH 325

Query: 192 C-PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML-L 249
              A+  FR+MQ    +PD  +FV + SAC+ L+ P  GKQ H +  K+   + SN + +
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKS--NIPSNRISV 383

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+I++Y K G +  A RVF                                D+M + +
Sbjct: 384 NNALISLYYKSGNLLDARRVF--------------------------------DRMPELN 411

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            VS+  MI GY+Q G  ++AL L+ +M   GI P+ +T VA+L AC   G +D G++   
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFN 471

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
              E           + +ID+  + G ++ A      +P    +V+ + +++    +H  
Sbjct: 472 TMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVA-WAALLGACRKH-- 528

Query: 430 GETSIAVFREMELMGLKPDGVT-FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
              ++A     ELM ++P   T +V +    +  G  EE     +SM    I+ +
Sbjct: 529 KNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKK 583



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 163/327 (49%), Gaps = 10/327 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L  L S   L    Q HG+++ +G   N H+ S  LI F++  G ++G+  S  +F 
Sbjct: 244 ASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSG-LIDFYSKCGGRDGMSDSEKVFQ 302

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +I +P++ +WNT++ GYS ++   E  V     + +    P++ +F  V ++C+ LSS  
Sbjct: 303 EILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

Query: 127 SGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            G QIH   IK  +  + + + NALI  Y   G + +A +VF+     + VS+N +I GY
Sbjct: 363 QGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGY 422

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ      AL L+++M DS I P+  TFVA+ SAC        G+++   + +    +  
Sbjct: 423 AQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFK-IEP 481

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK----IERARQL 301
                + +I++  + G +  AER    M     + AW++++ G  R+ K     ERA + 
Sbjct: 482 EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL-GACRKHKNMALAERAAKE 540

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQ 328
              M       +  + + Y+  G + +
Sbjct: 541 LMVMQPLAATPYVMLANMYADAGKWEE 567



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 128/536 (23%), Positives = 217/536 (40%), Gaps = 123/536 (22%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +L S A    F +G  +H   +K  +    ++ N  ++ YS  G ++ A   F+ +   
Sbjct: 14  LLLKSVAERDLF-TGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEP 72

Query: 174 DLVSYNTLI-------------------------------NGYAQVKEPCPALWLFRKMQ 202
           ++ SYN ++                               +GYA  +E   A+ LF++M+
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +   + D FT   + +AC +  D  + KQ H       G   S   +  A +  Y+K GL
Sbjct: 133 ELGFEVDGFTLSGLIAACCDRVD--LIKQLHCFAVS--GGFDSYSSVNNAFVTYYSKGGL 188

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A  VF  M   +   +W+SMI  Y                             G  +
Sbjct: 189 LREAVSVFYGMDGLRDEVSWNSMIVAY-----------------------------GQHK 219

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G  ++AL L+ +M   G   D  T+ +VL A   L  L  G++ H + I+   F +N  
Sbjct: 220 EG--AKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIK-AGFHQNSH 276

Query: 383 LTTAVIDMYAKCGSID---TALSVFYKIPKNLKTVSLFNSIISGLA-QHGLGETSIAVFR 438
           + + +ID Y+KCG  D    +  VF +I      + L+N++ISG +      E ++  FR
Sbjct: 277 VGSGLIDFYSKCGGRDGMSDSEKVFQEILS--PDLVLWNTMISGYSMNEEHSEEAVKSFR 334

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK----------------- 481
           +M+ +G +PD  +FV V  ACS+     +GKQ     +   I                  
Sbjct: 335 QMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKS 394

Query: 482 -------------PQME--HYGCMVDLLARDGRLDEAYGLIQSM---PYDANSVIWRALL 523
                        P++    + CM+   A+ G   EA  L Q M       N++ + A+L
Sbjct: 395 GNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAIL 454

Query: 524 AACRLHRNAKIGEI-AGQKLLD-------LEPDHGAHYVLLSNMLAETYRWEEARQ 571
           +AC     A  G++  GQK  +       +EP+   HY  + ++L    + EEA +
Sbjct: 455 SAC-----AHCGKVDEGQKYFNTMKETFKIEPE-AEHYSCMIDLLGRAGKLEEAER 504


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/670 (32%), Positives = 368/670 (54%), Gaps = 49/670 (7%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  + + N+  W  LM G+ R       L L   M +    +PN +T    L +C  + 
Sbjct: 14  VFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVG 73

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS-LARDLVSYNTLI 182
              +G  IH   ++ G +    + ++L+  YS  G I +A +VF+G+ L   + ++N ++
Sbjct: 74  DTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMV 133

Query: 183 NGYAQVKEPCPALWLFRKMQ--DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +GYA       AL +FR+M+  +   QPD FTF ++  AC+ L   R G Q HA +  + 
Sbjct: 134 SGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASG 193

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
               SN +L  A+++MY KC                                 ++  A Q
Sbjct: 194 FSTASNAILAGALVDMYVKCR--------------------------------RLPVAMQ 221

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +F+++++++++ WTA++ G++Q G  ++ALELF +    G  PD   + +V+        
Sbjct: 222 VFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFAL 281

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G+++H   I++   G ++    +++DMY KCG  D A  +F ++      V  + ++
Sbjct: 282 VEQGRQVHCYGIKDPT-GTDVSAGNSIVDMYLKCGLPDEAERMFREM--RAPNVVSWTTM 338

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYG 479
           ++GL +HGLG  ++A+F EM   G++PD VT++ +L ACSH GLV+E +++F  +  +  
Sbjct: 339 VNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRT 398

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG 539
           ++P+ EHY CMVDLL R G L EA  LI++MP +    +W+ LL+ACR+H++  +G  AG
Sbjct: 399 VRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAG 458

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
             LL ++ D+  +YV LSN+LAE   W E  +VR  M   G++K  G S++E    +H F
Sbjct: 459 DVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFF 518

Query: 600 LAS---KKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQ-VVFDVDEEEKETVVSYHSEK 654
                 +++HPQ  +I  +L+DM  +++   GY  +  +  + DVDEE +   +  HSE+
Sbjct: 519 YGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSER 578

Query: 655 LALAF-----GLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           LA+       G+      E IR+ KNLR+CGDCH  FK LS + RR ++VRDA RFH F+
Sbjct: 579 LAVGLWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFE 638

Query: 710 KGNCSCMDFW 719
            G+CSC D+W
Sbjct: 639 HGSCSCKDYW 648



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 179/418 (42%), Gaps = 56/418 (13%)

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD-SCIQPDAF 211
            Y   G ++ A +VF G   R++VS+  L+ G+ +  +    L L  +M+  S   P+ +
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 212 TFVAMFSACTELNDPRIGKQFHAVV----YKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
           T  A   AC  + D   G   H +     Y+    V S+++L      +Y+K G +  A 
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVL------VYSKGGRIGDAR 114

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
           RVF   G+    A W++M+SGY   G    A  +F +M + +         G  Q     
Sbjct: 115 RVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHE---------GQHQ----- 160

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI-ENVVFGRNIFLTTA 386
                          PDE T  ++L+AC GLGA   G ++H            N  L  A
Sbjct: 161 ---------------PDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGA 205

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           ++DMY KC  +  A+ VF ++ +  K V  + +++ G AQ G    ++ +FR     G +
Sbjct: 206 LVDMYVKCRRLPVAMQVFERLER--KNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGAR 263

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK----PQMEHYGCMVDLLARDGRLDE 502
           PD     +V+   +   LVE+G+Q       YGIK      +     +VD+  + G  DE
Sbjct: 264 PDSHVLSSVVGVLADFALVEQGRQVH----CYGIKDPTGTDVSAGNSIVDMYLKCGLPDE 319

Query: 503 AYGLIQSMPYDANSVIWRALLAACRLH---RNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           A  + + M    N V W  ++     H   R A +      +   +EPD   +  LLS
Sbjct: 320 AERMFREMRA-PNVVSWTTMVNGLGKHGLGREA-VALFEEMRAGGVEPDEVTYLALLS 375



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 156/341 (45%), Gaps = 14/341 (4%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSGLN---HHISSSQLISFFALSGCKNGLFRSRI 63
           +  +LL++C  L   ++  Q+H  +  SG +   + I +  L+  +    C+  L  +  
Sbjct: 165 TFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVK--CRR-LPVAMQ 221

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F +++  N+  W  ++ G+++     EAL L+      G   P++     V+   A  +
Sbjct: 222 VFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSG-ARPDSHVLSSVVGVLADFA 280

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             + G Q+HC+ IK     D+   N+++  Y   G  + A ++F    A ++VS+ T++N
Sbjct: 281 LVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVN 340

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G  +      A+ LF +M+   ++PD  T++A+ SAC+        +++ + + ++   V
Sbjct: 341 GLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDR-TV 399

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                    ++++  + G +  A  +  TM M  +   W +++S       +   R+  D
Sbjct: 400 RPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGD 459

Query: 304 ---QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
               MD  + V++  + +  ++ G + +  ++   M   G+
Sbjct: 460 VLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGL 500



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 161/347 (46%), Gaps = 37/347 (10%)

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVT 347
           Y + G+++ A ++F  M  R++VSWTA++ G+ + G  +  L L G+M +     P+E T
Sbjct: 2   YVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYT 61

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           + A L+AC  +G    G  +H   +    +  +  + ++++ +Y+K G I  A  VF   
Sbjct: 62  LSASLKACCVVGDTAAGVGIHGLCV-RAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM--GLKPDGVTFVTVLCACSHGGLV 465
                 ++ +N+++SG A  G G  ++ VFREM       +PD  TF ++L ACS  G  
Sbjct: 121 GLG-SGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGAT 179

Query: 466 EEGKQFFESMLNYGIKPQMEHY--GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
            EG Q   +M   G          G +VD+  +  RL  A  + + +    N + W A++
Sbjct: 180 REGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERK-NVIQWTAVV 238

Query: 524 AACRLHRNAKIGEIAGQKLLDL---------EPDHGAHYVLLS--NMLAETYRWEEARQV 572
                  +A+ G++   + L+L          PD    +VL S   +LA+    E+ RQV
Sbjct: 239 VG-----HAQEGQVT--EALELFRRFWRSGARPD---SHVLSSVVGVLADFALVEQGRQV 288

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
                  GI+ P G      N  +  +L  K   P   E E M ++M
Sbjct: 289 HCY----GIKDPTGTDVSAGNSIVDMYL--KCGLPD--EAERMFREM 327


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/724 (34%), Positives = 395/724 (54%), Gaps = 58/724 (8%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFR-SRILFS 66
           S+ L++      L+    IH  I  SGL   +  ++ LI  +    CK G    +R++F 
Sbjct: 45  SNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMY----CKCGRIDWARLVFE 100

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR--LSS 124
             D  +   WN+L+ GY R  S  E L L   ML  G+ + N++     L +C     SS
Sbjct: 101 SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL-NLNSYALGSALKACGSNFSSS 159

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  +H   +K GL+ D+ +  AL+  Y+  G + +A K+F+     ++V YN +I G
Sbjct: 160 IECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAG 219

Query: 185 YAQVKEPC-----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK- 238
           + Q++         A++LF +MQ   ++P  FTF ++  AC+ +     GKQ HA ++K 
Sbjct: 220 FLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKY 279

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           NL    S+  +  A++ +Y                                +  G IE  
Sbjct: 280 NLQ---SDEFIGNALVELY--------------------------------SLSGSIEDG 304

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            + F    + D+VSWT++I G+ Q G F   L LF ++   G  PDE T+  +L AC  L
Sbjct: 305 LKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANL 364

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            A+  G+++H   I+  + G    +  + I MYAKCG ID+A ++ +K  KN   VS ++
Sbjct: 365 AAVKSGEQIHAYAIKTGI-GNFTIIQNSQICMYAKCGDIDSA-NMTFKETKNPDIVS-WS 421

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
            +IS  AQHG  + ++ +F  M+  G+ P+ +TF+ VL ACSHGGLVEEG ++FE M  +
Sbjct: 422 VMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKD 481

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI P ++H  C+VDLL R GRL EA   I    ++ + V+WR+LL+ACR+H+    G+ 
Sbjct: 482 HGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKR 541

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             +++++LEP+  A YVLL N+  +      A ++R LM D G++K PG S+IE    +H
Sbjct: 542 VAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVH 601

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE--TVVSYHSEKL 655
            F+A  +SHP ++ I + L++M  ++K   Y+    ++V D  E + +  ++VSYHSEKL
Sbjct: 602 SFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDE--KLVSDASEPKHKDNSMVSYHSEKL 659

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+ FG+I+      +R+ KNLR C  CH   KL S +  REI++RD IRFH F+ G+CSC
Sbjct: 660 AVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSC 719

Query: 716 MDFW 719
            D+W
Sbjct: 720 GDYW 723



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 49/410 (11%)

Query: 4   LVLEHSSLLALLESC-----KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG 57
           L L   +L + L++C      S++    +HG  V  GL+  +   + L+  +A  G    
Sbjct: 138 LNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIG---D 194

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDS-----PQEALVLYTSMLSKGIVSPNNFTF 112
           L  +  +F  + +PN+ ++N ++ G+ + ++       EA+ L+  M S+G+  P+ FTF
Sbjct: 195 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGM-KPSEFTF 253

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             +L +C+ + +F+ G QIH  I K+ L+ D FI NAL+  YS+ G I +  K F  +  
Sbjct: 254 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPK 313

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            D+VS+ +LI G+ Q  +    L LF ++  S  +PD FT   M SAC  L   + G+Q 
Sbjct: 314 LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI 373

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA   K    +G+  +++ + I MYAKCG ++ A   F     +    +WS MI      
Sbjct: 374 HAYAIKT--GIGNFTIIQNSQICMYAKCGDIDSANMTFKET-KNPDIVSWSVMI------ 424

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                                    S  +Q G   +A++LF  M+  GI P+ +T + VL
Sbjct: 425 -------------------------SSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVL 459

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            AC   G ++ G R  +   ++     N+  +  ++D+  + G +  A S
Sbjct: 460 VACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAES 509



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 164/351 (46%), Gaps = 15/351 (4%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGC-KNGL 58
           MK      SS+L    + ++ +   QIH QI    L +     + L+  ++LSG  ++GL
Sbjct: 246 MKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGL 305

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
                 F      ++  W +L+ G+ ++   +  L L+  +L  G   P+ FT   +L++
Sbjct: 306 ----KCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSG-RKPDEFTISIMLSA 360

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           CA L++ KSG QIH + IK G+     I+N+ I  Y+  G I++A+  F+ +   D+VS+
Sbjct: 361 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSW 420

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           + +I+  AQ      A+ LF  M+ S I P+  TF+ +  AC+       G ++  ++ K
Sbjct: 421 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 480

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG-----YTREG 293
           + G +  N+     ++++  + G +  AE      G       W S++S       T  G
Sbjct: 481 DHG-ITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 539

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           K  R  +   +++     S+  + + Y+  G    A E+   M+  G+  +
Sbjct: 540 K--RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKE 588



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M +R++VSW ++ISGY+Q+G + + + LF +     +  D+ T    L  C     L  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +H   I     G  + LT ++IDMY KCG ID A  VF +    L +VS +NS+I+G 
Sbjct: 61  RLIH-ALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVF-ESADELDSVS-WNSLIAGY 117

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC--SHGGLVEEGKQFFESMLNYGIKP 482
            + G  +  + +  +M   GL  +     + L AC  +    +E GK      +  G+  
Sbjct: 118 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL 177

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +     ++D  A+ G L++A  + + MP D N V++ A++A 
Sbjct: 178 DVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAG 219


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/725 (32%), Positives = 389/725 (53%), Gaps = 70/725 (9%)

Query: 10   SLLALLESCKSLKQALQIHGQIVHSGL----NHHISSSQLISFFALSGCKNGLFRSRILF 65
            S +A+L +C +  +AL   G+ +HS +      ++ SS      ++ G    +  + ++F
Sbjct: 439  SFIAILNACSN-SEALDF-GRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVF 496

Query: 66   SQIDNPN--IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC---- 119
             ++  P+  +  WN ++  Y+++D  +EA      ML  G++ P+  +F  VL+SC    
Sbjct: 497  KEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL-PDALSFTSVLSSCYCSQ 555

Query: 120  ----ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
                 R+   +SG +  C            +  ALI  +     +  A  VF      D+
Sbjct: 556  EAQVLRMCILESGYRSAC------------LETALISMHGRCRELEQARSVFNEMDHGDV 603

Query: 176  VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
            VS+  +++  A+ ++      LFR+MQ   + PD FT       C       +GK  HA 
Sbjct: 604  VSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHAC 663

Query: 236  VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            V + +G + +++ ++ A++NMY+ CG                    W   +S        
Sbjct: 664  VTE-IG-LEADIAVENALLNMYSNCG-------------------DWREALS-------- 694

Query: 296  ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
                  F+ M  RDLVSW  M + Y+Q G   +A+ LF +M+  G+ PD++T    L   
Sbjct: 695  -----FFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVS 749

Query: 356  VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             G   +  GK  H    E+ +   ++ + T ++ +YAKCG +D A+S+F        TV 
Sbjct: 750  GGSALVSDGKLFHALAAESGL-DSDVSVATGLVKLYAKCGKLDEAMSLFRGACD--WTVV 806

Query: 416  LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            L N+II  LAQHG  E ++ +F +M+  G++PD  T V+++ AC H G+VEEG   F +M
Sbjct: 807  LLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTM 866

Query: 476  LNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              Y GI P +EHY C VDLL R G+L+ A  +I+ MP++ N+++W +LL  C+L  +A++
Sbjct: 867  KEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAEL 926

Query: 535  GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            GE   Q++L+L+P + A +V+LSN+   T +W++A   RK M D  ++  PG S+ E   
Sbjct: 927  GERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGK 986

Query: 595  TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
             +H F+A  +SHP+T EI ++L  + + ++ AGY  +      DV++E KE  + YHSE+
Sbjct: 987  QVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEADK---GLDVEDELKEKALGYHSER 1043

Query: 655  LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
            +A+AFGLI +  + T++I KNLR+CGDCH A K +S +  REI+VRD++RFH F  G CS
Sbjct: 1044 IAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCS 1103

Query: 715  CMDFW 719
            C D W
Sbjct: 1104 CKDCW 1108



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 158/581 (27%), Positives = 271/581 (46%), Gaps = 55/581 (9%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           ALL+SC     L +    H  I ++GL  H+   + LI+ +   G    L  +  +FS++
Sbjct: 30  ALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCG---SLEEAHAIFSKM 86

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           +  N+  W  L+   ++  +   A  L+ +ML +   +PN++T   +LN+CA       G
Sbjct: 87  EERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 129 CQIHCHIIKFGLE----FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             IH  I + GLE        + NA+I+ Y+  G + +A  VF     +D+VS+  +   
Sbjct: 147 RSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGA 206

Query: 185 YAQVKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           YAQ +   P AL +FR+M    + P+  TF+    ACT L D   G   H+++++    +
Sbjct: 207 YAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHE--ASL 261

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G + L   A+INMY KCG    A  VF  M                        +RQ   
Sbjct: 262 GFDPLASNALINMYGKCGDWEGAYSVFKAMA-----------------------SRQ--- 295

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
              + DLVSW AMIS   + G    A+ +F ++   G+ P+ VT++ +L A    G +DF
Sbjct: 296 ---ELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDF 351

Query: 364 G--KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G  +  H +  E+    R++ +  A+I MYAKCG    A +VF +I      +S +N+++
Sbjct: 352 GAARGFHGRIWESGYL-RDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVIS-WNTML 409

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
                       +  F  M L G+ P+ V+F+ +L ACS+   ++ G++    +L     
Sbjct: 410 GASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRD 469

Query: 482 PQMEHYGCM-VDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLHRNAKIGEIAG 539
                   M V +  + G + EA  + + MP  + S++ W  +L A    +N +  E  G
Sbjct: 470 YVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA--YAQNDRSKEAFG 527

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580
             +  L+       +  +++L+  Y  +EA+ +R  + +SG
Sbjct: 528 ALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESG 568



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 138/547 (25%), Positives = 250/547 (45%), Gaps = 78/547 (14%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQL-----ISFFALSGCKNGLFRS 61
           +L+A+L +C   + L     IH  I   GL    +++ L     I+ +A  G    L  +
Sbjct: 129 TLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCG---SLEDA 185

Query: 62  RILFSQIDNPNIFIWNTLMRGYS--RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
             +F  I   ++  W  +   Y+  R   P +AL ++  ML + + +PN  TF   L +C
Sbjct: 186 IAVFLAIPEKDVVSWTAMAGAYAQERRFYP-DALRIFREMLLQPL-APNVITFITALGAC 243

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR---DLV 176
              +S + G  +H  + +  L FD    NALI+ Y   G    A+ VF+   +R   DLV
Sbjct: 244 ---TSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLV 300

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN-DPRIGKQFHAV 235
           S+N +I+   +      A+ +FR+++   ++P++ T + + +A      D    + FH  
Sbjct: 301 SWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGR 360

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           ++++ G +  ++++  A+I+MYAKCG  + A  VF  +        W             
Sbjct: 361 IWES-GYL-RDVVIGNAIISMYAKCGFFSAAWAVFRRI-------RWKC----------- 400

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
                        D++SW  M+        F + +  F  M   GI P++V+ +A+L AC
Sbjct: 401 -------------DVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNAC 447

Query: 356 VGLGALDFGKRLH-------QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
               ALDFG+++H       + Y+E+ V        T ++ MY KCGSI  A  VF ++P
Sbjct: 448 SNSEALDFGRKIHSLILTRRRDYVESSV-------ATMLVSMYGKCGSISEAELVFKEMP 500

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL--CACSHGGLVE 466
              +++  +N ++   AQ+   + +     EM   G+ PD ++F +VL  C CS     +
Sbjct: 501 LPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS-----Q 555

Query: 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           E +     +L  G +        ++ +  R   L++A  +   M +  + V W A+++A 
Sbjct: 556 EAQVLRMCILESGYRSACLETA-LISMHGRCRELEQARSVFNEMDH-GDVVSWTAMVSAT 613

Query: 527 RLHRNAK 533
             +R+ K
Sbjct: 614 AENRDFK 620


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/724 (34%), Positives = 395/724 (54%), Gaps = 58/724 (8%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFR-SRILFS 66
           S+ L++      L+    IH  I  SGL   +  ++ LI  +    CK G    +R++F 
Sbjct: 124 SNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMY----CKCGRIDWARLVFE 179

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR--LSS 124
             D  +   WN+L+ GY R  S  E L L   ML  G+ + N++     L +C     SS
Sbjct: 180 SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL-NLNSYALGSALKACGSNFSSS 238

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G  +H   +K GL+ D+ +  AL+  Y+  G + +A K+F+     ++V YN +I G
Sbjct: 239 IECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAG 298

Query: 185 YAQVKEPC-----PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK- 238
           + Q++         A++LF +MQ   ++P  FTF ++  AC+ +     GKQ HA ++K 
Sbjct: 299 FLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKY 358

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           NL    S+  +  A++ +Y                                +  G IE  
Sbjct: 359 NLQ---SDEFIGNALVELY--------------------------------SLSGSIEDG 383

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            + F    + D+VSWT++I G+ Q G F   L LF ++   G  PDE T+  +L AC  L
Sbjct: 384 LKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANL 443

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            A+  G+++H   I+  + G    +  + I MYAKCG ID+A ++ +K  KN   VS ++
Sbjct: 444 AAVKSGEQIHAYAIKTGI-GNFTIIQNSQICMYAKCGDIDSA-NMTFKETKNPDIVS-WS 500

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-N 477
            +IS  AQHG  + ++ +F  M+  G+ P+ +TF+ VL ACSHGGLVEEG ++FE M  +
Sbjct: 501 VMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKD 560

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           +GI P ++H  C+VDLL R GRL EA   I    ++ + V+WR+LL+ACR+H+    G+ 
Sbjct: 561 HGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKR 620

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             +++++LEP+  A YVLL N+  +      A ++R LM D G++K PG S+IE    +H
Sbjct: 621 VAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVH 680

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE--TVVSYHSEKL 655
            F+A  +SHP ++ I + L++M  ++K   Y+    ++V D  E + +  ++VSYHSEKL
Sbjct: 681 SFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDE--KLVSDASEPKHKDNSMVSYHSEKL 738

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+ FG+I+      +R+ KNLR C  CH   KL S +  REI++RD IRFH F+ G+CSC
Sbjct: 739 AVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSC 798

Query: 716 MDFW 719
            D+W
Sbjct: 799 GDYW 802



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 49/410 (11%)

Query: 4   LVLEHSSLLALLESC-----KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG 57
           L L   +L + L++C      S++    +HG  V  GL+  +   + L+  +A  G    
Sbjct: 217 LNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIG---D 273

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDS-----PQEALVLYTSMLSKGIVSPNNFTF 112
           L  +  +F  + +PN+ ++N ++ G+ + ++       EA+ L+  M S+G+  P+ FTF
Sbjct: 274 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGM-KPSEFTF 332

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             +L +C+ + +F+ G QIH  I K+ L+ D FI NAL+  YS+ G I +  K F  +  
Sbjct: 333 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPK 392

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
            D+VS+ +LI G+ Q  +    L LF ++  S  +PD FT   M SAC  L   + G+Q 
Sbjct: 393 LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI 452

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA   K    +G+  +++ + I MYAKCG ++ A   F     +    +WS MI      
Sbjct: 453 HAYAIKT--GIGNFTIIQNSQICMYAKCGDIDSANMTFKET-KNPDIVSWSVMI------ 503

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                                    S  +Q G   +A++LF  M+  GI P+ +T + VL
Sbjct: 504 -------------------------SSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVL 538

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            AC   G ++ G R  +   ++     N+  +  ++D+  + G +  A S
Sbjct: 539 VACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAES 588



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGC-KNGL 58
           MK      SS+L    + ++ +   QIH QI    L +     + L+  ++LSG  ++GL
Sbjct: 325 MKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGL 384

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
                 F      ++  W +L+ G+ ++   +  L L+  +L  G   P+ FT   +L++
Sbjct: 385 ----KCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSG-RKPDEFTISIMLSA 439

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           CA L++ KSG QIH + IK G+     I+N+ I  Y+  G I++A+  F+ +   D+VS+
Sbjct: 440 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSW 499

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           + +I+  AQ      A+ LF  M+ S I P+  TF+ +  AC+       G ++  ++ K
Sbjct: 500 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 559

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG-----YTREG 293
           + G +  N+     ++++  + G +  AE      G       W S++S       T  G
Sbjct: 560 DHG-ITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 618

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           K  R  +   +++     S+  + + Y+  G    A E+   M+  G+
Sbjct: 619 K--RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGV 664



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 4/187 (2%)

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           LG+  D VT   +++     G+L  GK  H   I+   F   +FL   ++ MY KCG  D
Sbjct: 13  LGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIK-TCFKPCLFLLNNLLYMYCKCGETD 71

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A  +F ++PK  + V  +NS+ISG  Q G     + +F+E  +  L+ D  TF   L  
Sbjct: 72  VAKKLFDRMPK--RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSV 129

Query: 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI 518
           C     +  G+     +   G+   +     ++D+  + GR+D A  + +S   + +SV 
Sbjct: 130 CGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVS 188

Query: 519 WRALLAA 525
           W +L+A 
Sbjct: 189 WNSLIAG 195


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/458 (43%), Positives = 293/458 (63%), Gaps = 5/458 (1%)

Query: 264 NMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           ++A  +F T G       +W++M+ G  R G ++ AR++FD M  R+LVSW +MISGY +
Sbjct: 148 DLARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVK 207

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
              F  ALE+F +M +LG+  +     + L AC G GAL  G+ +++ ++E      +  
Sbjct: 208 ADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYR-WVEQSGIEVDAK 266

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L TAV+DMY KCG +D A  VF  +P   + ++ +N +I G A HG  + ++ +F +ME 
Sbjct: 267 LATAVVDMYCKCGCVDEAWGVFDSLPA--RGLTTWNCMIGGFAVHGRCDDALELFHQMEA 324

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G+ PD VT + VL AC+H G V EG+++   +++ +GI+P+ EHYGCMVDL  R G+LD
Sbjct: 325 AGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLD 384

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA  +I  MP D +  +  ALL AC++H +  +GE  G +++DL+PD+   YVLL+N+LA
Sbjct: 385 EAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLA 444

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
              RW+E  +VR+LMD+  + K  G S IE +G    F      HPQ +EI  M  DM  
Sbjct: 445 GAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVS 504

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           ++++ GYVP+T + + DV EE+KE  +  HSEKLA+AFGL+ +R +ET+RITKNLR+C D
Sbjct: 505 RIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRD 564

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A K +S ++ REI+VRD  RFH FK G CSC D+W
Sbjct: 565 CHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 124/258 (48%), Gaps = 9/258 (3%)

Query: 44  QLISFFALSG--CKNGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
            ++S+  + G  C+ GL   +R +F  +   N+  WN+++ GY ++D   +AL ++  M 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
           + G V  N F     L +C    +   G +I+  + + G+E D  +  A++  Y   G +
Sbjct: 223 ALG-VEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCV 281

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           + A  VF+   AR L ++N +I G+A       AL LF +M+ + + PD  T + + +AC
Sbjct: 282 DEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTAC 341

Query: 221 TELNDPRIGKQF--HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
               +   G+++  H V    +   G +      +++++ + G ++ A++V   M M   
Sbjct: 342 AHAGEVSEGRRYLNHIVSRHGIEPKGEHY---GCMVDLFGRAGQLDEAKKVIDEMPMDPD 398

Query: 279 TAAWSSMISGYTREGKIE 296
            A   +++      G ++
Sbjct: 399 LAVLGALLGACKIHGDVD 416


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 342/568 (60%), Gaps = 41/568 (7%)

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           Y   G +++A  VF+   +RD+VS+  LI GYAQ   P  A+ L   M  +  +P+ FTF
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
            ++  A        IG+Q HA+  K       ++ + +A+++MYA+C  M+MA  V    
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKY--NWDEDVYVGSALLDMYARCEQMDMAIMV---- 115

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
                                       FD++  ++ VSW A+I+G+++       L  F
Sbjct: 116 ----------------------------FDRLVSKNEVSWNALIAGFARKADGETTLMKF 147

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMY 391
            +M+  G      T  ++  A   +GAL+ G+ +H   I++   G+ +  F+   ++ MY
Sbjct: 148 AEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKS---GQKLTAFVGNTMLGMY 204

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AK GS+  A  VF ++ K  + +  +N++++ LAQ+GLG+ ++A F E+   G++ + +T
Sbjct: 205 AKSGSMVDARKVFDRMDK--RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQIT 262

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F++VL ACSHGGLV+EGK +F+ M +Y ++P+++HY   VDLL R G L EA   +  MP
Sbjct: 263 FLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMP 322

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
            +  + +W ALL ACR+H+NAK+G+ A   + +L+PD     VLL N+ A T +W +A +
Sbjct: 323 MEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAAR 382

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           VRK+M  +G++K P  S+++   ++H F+A   +HP++ +I  M +++ M++K AGYVPN
Sbjct: 383 VRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPN 442

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
           T  V+  ++E+E+ET + YHSEK+ALAF LIN  +  +IRI KN+RICGDCH AFK +S+
Sbjct: 443 TAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSK 502

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +++REI+VRD  RFH F +G+CSC D+W
Sbjct: 503 VFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 177/379 (46%), Gaps = 46/379 (12%)

Query: 54  CKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           CK G +  +R +F ++ + ++  W  L+ GY+++  P EA+ L   ML +    PN FTF
Sbjct: 3   CKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDML-RARFRPNGFTF 61

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             +L +         G Q+H   +K+  + D+++ +AL+  Y+    ++ A  VF+  ++
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           ++ VS+N LI G+A+  +    L  F +MQ +      FT+ +MFSA   +     G+  
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 233 HAVVYKN----LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           HA + K+       VG+ ML       MYAK G M  A +VF                  
Sbjct: 182 HAHLIKSGQKLTAFVGNTML------GMYAKSGSMVDARKVF------------------ 217

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                         D+MD+RDLV+W  M++  +Q G   +A+  F ++   GI  +++T 
Sbjct: 218 --------------DRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITF 263

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++VL AC   G +  GK      +++      I    + +D+  + G +  AL   +K+P
Sbjct: 264 LSVLTACSHGGLVKEGKHYFDM-MKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMP 322

Query: 409 KNLKTVSLFNSIISGLAQH 427
               T +++ +++     H
Sbjct: 323 ME-PTAAVWGALLGACRMH 340



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 156/337 (46%), Gaps = 10/337 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLL    +C       Q+H   V    +  +   S L+  +A   C+  +  + ++F +
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYAR--CEQ-MDMAIMVFDR 118

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + N   WN L+ G++R    +  L+ +  M   G     +FT+  + ++ AR+ + + 
Sbjct: 119 LVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGF-GATHFTYSSMFSAFARIGALEQ 177

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H H+IK G +   F+ N ++  Y+  G + +A KVF+    RDLV++NT++   AQ
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 237

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+  F +++   IQ +  TF+++ +AC+     + GK +  ++ K+   V   +
Sbjct: 238 YGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYN-VQPEI 295

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---Q 304
               + +++  + GL+  A      M M  + A W +++         +  +   D   +
Sbjct: 296 DHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFE 355

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           +D  D      + + Y+  G ++ A  +   M++ G+
Sbjct: 356 LDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGV 392



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 36/270 (13%)

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MY KCG ++ A  VF  M  S+   +W                               T 
Sbjct: 1   MYCKCGAVSDARHVFDKMP-SRDVVSW-------------------------------TY 28

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           +I+GY+Q    ++A+ L   M      P+  T  ++L+A    G    G+++H   ++  
Sbjct: 29  LIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVK-Y 87

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            +  ++++ +A++DMYA+C  +D A+ VF ++    K    +N++I+G A+   GET++ 
Sbjct: 88  NWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS--KNEVSWNALIAGFARKADGETTLM 145

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495
            F EM+  G      T+ ++  A +  G +E+G+     ++  G K        M+ + A
Sbjct: 146 KFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYA 205

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           + G + +A  +   M    + V W  +L A
Sbjct: 206 KSGSMVDARKVFDRMD-KRDLVTWNTMLTA 234



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 10/195 (5%)

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MY KCG++  A  VF K+P   + V  +  +I+G AQ+ +   +I +  +M     +P+G
Sbjct: 1   MYCKCGAVSDARHVFDKMPS--RDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNG 58

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
            TF ++L A    G    G+Q     + Y     +     ++D+ AR  ++D A  +   
Sbjct: 59  FTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 118

Query: 510 MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD-HGAHYVLLSNMLAETYR--- 565
           +    N V W AL+A     R A  GE    K  +++ +  GA +   S+M +   R   
Sbjct: 119 L-VSKNEVSWNALIAG--FARKAD-GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGA 174

Query: 566 WEEARQVRKLMDDSG 580
            E+ R V   +  SG
Sbjct: 175 LEQGRWVHAHLIKSG 189


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/619 (36%), Positives = 361/619 (58%), Gaps = 44/619 (7%)

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIF 157
           S+ S G+ + ++ T+  ++  C    +   G  I  H+   G +  +F+ N LI+ Y  F
Sbjct: 3   SLQSHGLWA-DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKF 61

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
             +N+AH++F+    R+++S+ T+I+ Y++ K    AL L   M    ++P+ +T+ ++ 
Sbjct: 62  NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVL 121

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
            AC  ++D R+    H  + K    + S++ +++A+I+++AK G                
Sbjct: 122 RACNGMSDVRM---LHCGIIKE--GLESDVYVRSALIDVFAKLG---------------- 160

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
                           + E A  +FD+M   D + W ++I G++Q      ALELF +M+
Sbjct: 161 ----------------EPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 204

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
             G   ++ T+ +VLRAC GL  L+ G + H   +  V + +++ L  A++DMY KCGS+
Sbjct: 205 RAGFIAEQATLTSVLRACTGLALLELGMQAH---VHIVKYDQDLILNNALVDMYCKCGSL 261

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF ++ +  + V  ++++ISGLAQ+G  + ++ +F  M+  G KP+ +T V VL 
Sbjct: 262 EDARRVFNQMKE--RDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLF 319

Query: 458 ACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACSH GL+E+G  +F SM   YGI P  EHYGCM+DLL + G+LD+A  L+  M  + ++
Sbjct: 320 ACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 379

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           V WR LL ACR+ RN  + E A +K++ L+P+    Y +LSN+ A + +W+   ++RK M
Sbjct: 380 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRM 439

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
            D GI+K PG S+IE N  +H F+   +SHPQ  E+   L  +  +L   GYVP T  V+
Sbjct: 440 RDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVL 499

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
            D++ E+ E  + +HSEKLALAFGL+   S++ IRI KNLRICGDCH+  KL S++  R 
Sbjct: 500 QDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRN 559

Query: 697 IMVRDAIRFHLFKKGNCSC 715
           I++RD IR+H F+ G CSC
Sbjct: 560 IVIRDPIRYHHFQDGKCSC 578



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 192/397 (48%), Gaps = 51/397 (12%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF Q+   N+  W T++  YS+    Q+AL L   ML  G V PN +T+  VL +C  +S
Sbjct: 70  LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDG-VRPNVYTYSSVLRACNGMS 128

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             +    +HC IIK GLE D+++R+ALI  ++  G   +A  VF+  +  D + +N++I 
Sbjct: 129 DVR---MLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG 185

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G+AQ      AL LF++M+ +    +  T  ++  ACT L    +G Q H  + K     
Sbjct: 186 GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----Y 241

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +++L  A+++MY KCG +  A RVF+ M   +    WS+MISG  +            
Sbjct: 242 DQDLILNNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISGLAQ------------ 288

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                         +GYSQ     +AL+LF  M+S G  P+ +T+V VL AC   G L+ 
Sbjct: 289 --------------NGYSQ-----EALKLFELMKSSGTKPNYITIVGVLFACSHAGLLED 329

Query: 364 G----KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           G    + + + Y  N   GR  +    +ID+  K G +D A+ +  ++      V+    
Sbjct: 330 GWYYFRSMKKLYGINP--GREHY--GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTL 385

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           + +   Q  +    +A +   +++ L P+     TVL
Sbjct: 386 LGACRVQRNM---VLAEYAAKKVIALDPEDAGTYTVL 419



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 45/226 (19%)

Query: 1   MKR--LVLEHSSLLALLESCKSL---KQALQIHGQIVHSGLNHHISSSQLISFFALSGCK 55
           MKR   + E ++L ++L +C  L   +  +Q H  IV    +  I ++ L+  +    CK
Sbjct: 203 MKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL-ILNNALVDMY----CK 257

Query: 56  NG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
            G L  +R +F+Q+   ++  W+T++ G +++   QEAL L+  M S G   PN  T   
Sbjct: 258 CGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSG-TKPNYITIVG 316

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           VL +C+     + G                            + Y  +  K++  +  R+
Sbjct: 317 VLFACSHAGLLEDG----------------------------WYYFRSMKKLYGINPGRE 348

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
              Y  +I+   +  +   A+ L  +M+    +PDA T+  +  AC
Sbjct: 349 --HYGCMIDLLGKAGKLDDAVKLLNEME---CEPDAVTWRTLLGAC 389


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/458 (43%), Positives = 293/458 (63%), Gaps = 5/458 (1%)

Query: 264 NMAERVFSTMGMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           ++A  +F T G       +W++M+ G  R G ++ AR++FD M  R+LVSW +MISGY +
Sbjct: 148 DLARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVK 207

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
              F  ALE+F +M +LG+  +     + L AC G GAL  G+ +++ ++E      +  
Sbjct: 208 ADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYR-WVEQSGIEVDAK 266

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           L TAV+DMY KCG +D A  VF  +P   + ++ +N +I G A HG  + ++ +F +ME 
Sbjct: 267 LATAVVDMYCKCGCVDEAWRVFDSLPA--RGLTTWNCMIGGFAVHGRCDDALELFHQMEA 324

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLD 501
            G+ PD VT + VL AC+H G V EG+++   +++ +GI+P+ EHYGCMVDL  R G+LD
Sbjct: 325 AGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLD 384

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EA  +I  MP D +  +  ALL AC++H +  +GE  G +++DL+PD+   YVLL+N+LA
Sbjct: 385 EAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLA 444

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
              RW+E  +VR+LMD+  + K  G S IE +G    F      HPQ +EI  M  DM  
Sbjct: 445 GAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVS 504

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
           ++++ GYVP+T + + DV EE+KE  +  HSEKLA+AFGL+ +R +ET+RITKNLR+C D
Sbjct: 505 RIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRD 564

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CH A K +S ++ REI+VRD  RFH FK G CSC D+W
Sbjct: 565 CHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 125/258 (48%), Gaps = 9/258 (3%)

Query: 44  QLISFFALSG--CKNGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML 100
            ++S+  + G  C+ GL   +R +F  +   N+  WN+++ GY ++D   +AL ++  M 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI 160
           + G V  N F     L +C    +   G +I+  + + G+E D  +  A++  Y   G +
Sbjct: 223 ALG-VEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCV 281

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           + A +VF+   AR L ++N +I G+A       AL LF +M+ + + PD  T + + +AC
Sbjct: 282 DEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTAC 341

Query: 221 TELNDPRIGKQF--HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
               +   G+++  H V    +   G +      +++++ + G ++ A++V   M M   
Sbjct: 342 AHAGEVSEGRRYLNHIVSRHGIEPKGEHY---GCMVDLFGRAGQLDEAKKVIDEMPMDPD 398

Query: 279 TAAWSSMISGYTREGKIE 296
            A   +++      G ++
Sbjct: 399 LAVLGALLGACKIHGDVD 416


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/514 (41%), Positives = 315/514 (61%), Gaps = 7/514 (1%)

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           +PD FTF  +  +   L+   +  Q HA++ K LG   ++     A++  Y      ++A
Sbjct: 98  RPDHFTFPQILPSAQPLH---LVAQLHALLLK-LG-FHAHTQSLNALLAAYLANARPDLA 152

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
            RVF   G +    +W++M+ G  + G  + AR LFD M +R+LVSW AM+SGY +   F
Sbjct: 153 SRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRF 212

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
             ALE+F +M + G+  +       + AC G GAL  G+ +H+ ++E      +  L TA
Sbjct: 213 LDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHR-WVEQSGIQMDEKLATA 271

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           V+DMY KCG ++ A  VF  +P   K ++ +N +I G A HG G+ ++ +F  ME  G+ 
Sbjct: 272 VVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVA 331

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           PD VT V VL AC+H G++ EG+ +F  +   YGI+P+MEHYGCMVDL  R GRL+EA  
Sbjct: 332 PDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKK 391

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
           +IQ MP + +  +  AL  A ++H +  +GE  G ++++L+P +   YVLL+N+LA   R
Sbjct: 392 VIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGR 451

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           WE+  +VR+LMD+  + K  G S IE  G +  F      HP+ +E+  M  DM  K+++
Sbjct: 452 WEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRA 511

Query: 626 AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLA 685
            GYVP+T  V+  + EEEKET + YHSEKLA+AFGL+++R  +T+RITKNLR+C DCH A
Sbjct: 512 EGYVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEA 571

Query: 686 FKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            K +S ++ R+I+VRD  RFH FK G CSC D+W
Sbjct: 572 TKFVSRVFERQIVVRDRNRFHHFKDGQCSCKDYW 605



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 104/444 (23%), Positives = 179/444 (40%), Gaps = 80/444 (18%)

Query: 26  QIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q H Q++  G+  H + + +L+SF A     +  + SR+L    D P+  ++N L     
Sbjct: 23  QHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYASRLLAHHPD-PHPALFNPLF---- 77

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE--- 141
            S  P        +++    + P++FTFP +L S   L       Q+H  ++K G     
Sbjct: 78  -SALPTRHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLV---AQLHALLLKLGFHAHT 133

Query: 142 -----------------------------FDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
                                         D+     ++      G  ++A  +F+G   
Sbjct: 134 QSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPE 193

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R+LVS+N +++GY +      AL +F +M+   +  + F       ACT       G++ 
Sbjct: 194 RNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREV 253

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM-SKSTAAWSSMISGYTR 291
           H  V ++   +  +  L TAV++MY KCG +  A RVF  + + +K    W+ MI G+  
Sbjct: 254 HRWVEQS--GIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAV 311

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+ +                                AL+LFG+ME  G+ PD+VT+V V
Sbjct: 312 HGRGQ-------------------------------DALKLFGRMEREGVAPDDVTLVNV 340

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC   G L  G+       +       +     ++D+Y + G ++ A  V   +P   
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME- 399

Query: 412 KTVSLFNSIISGLAQHG---LGET 432
             V +  ++      HG   LGE 
Sbjct: 400 PDVGVLGALFGASKIHGDVDLGEA 423


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 334/568 (58%), Gaps = 44/568 (7%)

Query: 159 YINNAHKVFEG-SLARDLVSYNTLINGYAQVKEPCPA-----LWLFRKMQDSCIQPDAFT 212
           ++  A +VF+  +   D V YNTL+ GYA+      +     + +F +M +  + PD +T
Sbjct: 76  HLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYT 135

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           FV++  AC        G+Q HAV  K LG  G + +  T +INMYA+CG           
Sbjct: 136 FVSLLKACAAARAGEHGRQAHAVAVK-LGAAGHDYVRPT-LINMYAECG----------- 182

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                    AR  F + D   +VS+ AMI+   +     +AL L
Sbjct: 183 ---------------------DARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVL 221

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M++ G++P  VT+++VL AC  LGAL  G+ LH  Y+  +  G  + ++TA++DMYA
Sbjct: 222 FREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHD-YVRKLGLGSLVKVSTALVDMYA 280

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCGS++ A++VF  +    +    ++ +I   A HG G  +I++F EM+  G+KPD +TF
Sbjct: 281 KCGSLEDAIAVFQGMESRDRQA--WSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITF 338

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           + +L ACSH GLV EG ++F+ M ++GI P ++HYGC+ DLLAR G+L+ AY  I  +P 
Sbjct: 339 LGLLYACSHSGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPI 398

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
           +   ++WR LL+AC  H + ++G+   +++L+L+  HG  YV+ SN+ A T  WEE  +V
Sbjct: 399 NPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRV 458

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           RKLM D G+ K PG S IE + T+H F A    HP+++E   M+ ++  +LK  GY+P+T
Sbjct: 459 RKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDT 518

Query: 633 VQVV-FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
             V   ++ EEEK   + YHSEKLA+AFGL+N+    T+R+ KNLR+C DCH   K +S 
Sbjct: 519 SHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSM 578

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++ R I++RD  RFH F++G CSC D+W
Sbjct: 579 VFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 225/479 (46%), Gaps = 48/479 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG-LFRSRILFSQI 68
           LL+ L  C SL+   Q+H   V +GL  H +  ++L++     G     L  +R +F ++
Sbjct: 28  LLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFDRV 87

Query: 69  DNPNIFIW-NTLMRGYSRSDSPQEA-----LVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
             P+  +W NTL+RGY+RS S   +     + ++  ML +G V+P+ +TF  +L +CA  
Sbjct: 88  TQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEG-VAPDTYTFVSLLKACAAA 146

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            + + G Q H   +K G     ++R  LI+ Y+  G    A   F  +    +VSYN +I
Sbjct: 147 RAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMI 206

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
               +   P  AL LFR+MQ   + P   T +++ SAC  L   ++G+  H  V K LG 
Sbjct: 207 AAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRK-LG- 264

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +GS + + TA+++MYAKCG +  A  VF  M  S+   AWS MI  Y             
Sbjct: 265 LGSLVKVSTALVDMYAKCGSLEDAIAVFQGM-ESRDRQAWSVMIVAYANH---------- 313

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                           GY +     +A+ LF +M+  G+ PD++T + +L AC   G + 
Sbjct: 314 ----------------GYGR-----EAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVS 352

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G R      ++ +    I     V D+ A+ G ++ A     ++P N  T  L+ +++S
Sbjct: 353 EGLRYFDDMKDHGIV-PGIKHYGCVTDLLARSGQLERAYKFIDELPIN-PTPILWRTLLS 410

Query: 423 GLAQHGLGETSIAVF-REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
               HG  E    VF R +EL      G  +V     C++ G  EE  +  + M + G+
Sbjct: 411 ACGGHGDVELGKRVFERILELD--DSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGV 467


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/616 (37%), Positives = 355/616 (57%), Gaps = 47/616 (7%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+F  NA++  YS  G + +   VF+     D VSYNT+I G++       AL  F +MQ
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +   +   +T V++  AC++L D + GKQ H  +      +G ++ +  A+ NMYAKCG 
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVAT--SLGESVFVWNALTNMYAKCGA 205

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD---------------- 306
           ++ A  +F  M ++K+  +W+SMISGY + G+ E   +LF +M                 
Sbjct: 206 LDQARWLFDRM-VNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILS 264

Query: 307 -------------------QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
                              ++D V WT M+ G +Q G    AL LF +M    + PD  T
Sbjct: 265 AYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFT 324

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFG--RNIFLTTAVIDMYAKCGSIDTALSVFY 405
           + +V+ +C  L +L  G+ +H +    V+FG   ++ +++A++DMY+KCG    A  VF 
Sbjct: 325 ISSVVSSCARLASLCQGQAVHGKA---VIFGVDHDLLVSSALVDMYSKCGETADAWIVFK 381

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++    + V  +NS+I G AQ+G    ++A++ EM    LKPD +TFV VL AC H GLV
Sbjct: 382 RMLT--RNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLV 439

Query: 466 EEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           E G+ +F S+   +G+ P  +HY CM++LL R G +D+A  LI+SM ++ N +IW  LL+
Sbjct: 440 ERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
            CR++ +   GE+A + L +L+P +   Y++LSN+ A   RW++   VR LM ++ I+K 
Sbjct: 500 VCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKF 559

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
             +S+IE +  +H+F+A  ++H +T++I   L  +  KL+ +G+ P+T  V+ DV EEEK
Sbjct: 560 AAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEK 619

Query: 645 ETVVSYHSEKLALAFGLINSRSKET-IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
              + YHSEKLALAF LI      T IRI KN+R+CGDCH+  K +S+I RR I++RD  
Sbjct: 620 FDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDIN 679

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH F +G CSC D W
Sbjct: 680 RFHHFIEGRCSCKDSW 695



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 4/231 (1%)

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           ++  L+  ++++YAK G ++ A  +F  M   +   +W++M+S Y++ G +E  R +FDQ
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMS-RRDVFSWNAMLSAYSKSGNVEDLRAVFDQ 114

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M   D VS+  +I+G+S  G  SQALE F +M+  G    + T V+VL AC  L  +  G
Sbjct: 115 MSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRG 174

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           K++H + +     G ++F+  A+ +MYAKCG++D A  +F ++    K V  +NS+ISG 
Sbjct: 175 KQIHGRIVA-TSLGESVFVWNALTNMYAKCGALDQARWLFDRMVN--KNVVSWNSMISGY 231

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            Q+G  ET   +F EM+  GL PD VT   +L A    G ++E  + F  +
Sbjct: 232 LQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREI 282



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F +I   +   W T+M G +++   ++AL+L+  ML +  V P+NFT   V++SCARL+S
Sbjct: 279 FREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLEN-VRPDNFTISSVVSSCARLAS 337

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
              G  +H   + FG++ DL + +AL+  YS  G   +A  VF+  L R+++S+N++I G
Sbjct: 338 LCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILG 397

Query: 185 YAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           YAQ  +   AL L+ +M    ++PD  TFV + SAC        G+ +   + K  G + 
Sbjct: 398 YAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHG-MN 456

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
                 + +IN+  + G M+ A  +  +M    +   WS+++S
Sbjct: 457 PTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 30/204 (14%)

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK- 409
           +L  CV    +   KRL      ++    + FL   ++ +YAK G++  A  +F K+ + 
Sbjct: 28  LLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRR 87

Query: 410 -------------------NLKTV---------SLFNSIISGLAQHGLGETSIAVFREME 441
                              +L+ V           +N++I+G + +G    ++  F  M+
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501
             G +    T V+VL ACS    ++ GKQ    ++   +   +  +  + ++ A+ G LD
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD 207

Query: 502 EAYGLIQSMPYDANSVIWRALLAA 525
           +A  L   M  + N V W ++++ 
Sbjct: 208 QARWLFDRM-VNKNVVSWNSMISG 230


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 368/644 (57%), Gaps = 52/644 (8%)

Query: 84  SRSDSPQEALVLY------TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           S +DS +  + ++      +S+L+  IV     +  F ++SC  +S   +   IH  +IK
Sbjct: 115 SSNDSTRTKVAVFLGKLHNSSLLADSIVQ----SLVFAISSCTSVSYCSA---IHARVIK 167

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
                D FI + L+  Y   GY  +A ++F+    RDLVS+N+L++G +        L  
Sbjct: 168 SLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNA 227

Query: 198 FRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           F +M+ +S  QP+  T +++ SAC  +     GK  H VV K                  
Sbjct: 228 FCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVK------------------ 269

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
                           +GMS      +S+I+ Y + G ++ A QLF++M  R LVSW +M
Sbjct: 270 ----------------LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSM 313

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           +  ++  G   + ++LF  M+  GI+PD+ TMVA+LRAC   G     + +H  YI    
Sbjct: 314 VVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHA-YIHRCG 372

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           F  +I + TA++++YAK G ++ +  +F +I K+  T++ + ++++G A H  G  +I +
Sbjct: 373 FNADIIIATALLNLYAKLGRLNASEDIFEEI-KDRDTIA-WTAMLAGYAVHACGREAIKL 430

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F  M   G++ D VTF  +L ACSH GLVEEGK++FE M   Y ++P+++HY CMVDLL 
Sbjct: 431 FDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLG 490

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R GRL++AY LI+SMP + +S +W ALL ACR++ N ++G+   ++LL L+P    +Y++
Sbjct: 491 RSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIM 550

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+ +    W  A +VR LM +  + + PG S+IEH   +HRF+   + HP++ EI   
Sbjct: 551 LSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTK 610

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+++  K+  AG  P T  V+ D+DEE K  +++ HSEKLA+AFGL+ + S   + ITKN
Sbjct: 611 LEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKN 670

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LRICGDCH   K  S + +R I++RD+ RFH F  G CSC D+W
Sbjct: 671 LRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 58/408 (14%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           SL+  + SC S+     IH +++ S LN+       +L+S +   G      R   LF +
Sbjct: 144 SLVFAISSCTSVSYCSAIHARVIKS-LNYSDGFIGDRLVSMYFKLGYDEDAQR---LFDE 199

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + N ++  WN+LM G S        L  +  M ++    PN  T   V+++CA + +   
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI----- 182
           G  +H  ++K G+     + N+LI+ Y   G+++ A ++FE    R LVS+N+++     
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 319

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           NGYA+       + LF  M+ + I PD  T VA+  ACT+    R  +  HA +++   C
Sbjct: 320 NGYAE-----KGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR---C 371

Query: 243 -VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
              +++++ TA++N+YAK G +N +E +F  +   + T AW++M++GY        A +L
Sbjct: 372 GFNADIIIATALLNLYAKLGRLNASEDIFEEI-KDRDTIAWTAMLAGYAVHACGREAIKL 430

Query: 302 FDQMDQR----DLVSWTAMISGYSQVG-----------------------GFSQALELFG 334
           FD M +     D V++T ++S  S  G                        +S  ++L G
Sbjct: 431 FDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLG 490

Query: 335 K----------MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           +          ++S+ + P      A+L AC   G ++ GK + +Q +
Sbjct: 491 RSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL 538


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/483 (43%), Positives = 304/483 (62%), Gaps = 7/483 (1%)

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           +G    +  ++ ++I  Y  CG +  A +VF  M + K   +W+S++  YTR G +  A 
Sbjct: 170 VGGFDRHRFVENSLIGAYVACGDVGAARKVFDEM-VEKDVISWTSIVVAYTRSGDMRSAE 228

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           ++F +   +D+V+WTAM++GY+Q     +ALE+F +M  LG+  DEV++   + AC  LG
Sbjct: 229 EVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLG 288

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL     + Q+  E   FG N+ + + ++DMYAKCG ID A  VFY + +  K V  ++S
Sbjct: 289 ALRRAAWV-QEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQE--KNVYTYSS 345

Query: 420 IISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
           +I+GLA HG    +IA+F+EM     ++P+ VTF+ VL ACSH G+V EG+ +F  M + 
Sbjct: 346 MIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDK 405

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           YGI P  +HY CMVDLL R G +DEA  L++SM    +  +W ALL ACR+H  ++I ++
Sbjct: 406 YGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKV 465

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE-HNGTL 596
             + L  LEP+   +YVLLSN+LA   +WEE  +VR LM    ++K P  S  E  +G +
Sbjct: 466 VAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLV 525

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
           H+F A   +HP+T EI+  L ++  KLK  GYVP    +V+DV++EEKE ++  HSEKLA
Sbjct: 526 HQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLA 585

Query: 657 LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
           L+FGL+   S  TIRI KNLRIC DCHL  +L+S +   EI+VRD +RFH FK G CSC 
Sbjct: 586 LSFGLLTLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCG 645

Query: 717 DFW 719
            FW
Sbjct: 646 GFW 648



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 33/264 (12%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           +E D+    +++  Y+  G + +A +VF     +D+V++  ++ GYAQ   P  AL +F 
Sbjct: 204 VEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFD 263

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M +  +  D  +     SAC +L   R       +  +     G+N+++ + +++MYAK
Sbjct: 264 RMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERT--GFGNNVVVGSGLVDMYAK 321

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CGL++ A +VF  M   K+   +SSMI+G    G+   A  LF +M  R           
Sbjct: 322 CGLIDEASKVFYGM-QEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRA---------- 370

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
                                + P+ VT + VL AC   G +  G+    Q  +      
Sbjct: 371 --------------------NVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMP 410

Query: 380 NIFLTTAVIDMYAKCGSIDTALSV 403
           +      ++D+  + G +D AL +
Sbjct: 411 SADHYACMVDLLGRAGLVDEALDL 434



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 143/298 (47%), Gaps = 9/298 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +SL+    +C  +  A ++  ++V   +   IS + ++  +  SG    +  +  +F + 
Sbjct: 181 NSLIGAYVACGDVGAARKVFDEMVEKDV---ISWTSIVVAYTRSG---DMRSAEEVFGRC 234

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              ++  W  ++ GY+++  P +AL ++  M   G+V  +  +    +++CA+L + +  
Sbjct: 235 PVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVI-DEVSLTGAISACAQLGALRRA 293

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +     + G   ++ + + L+  Y+  G I+ A KVF G   +++ +Y+++I G A  
Sbjct: 294 AWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASH 353

Query: 189 KEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                A+ LF++M +   ++P+  TF+ + +AC+       G+ + A +    G + S  
Sbjct: 354 GRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSAD 413

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                ++++  + GL++ A  +  +M ++     W +++      GK E A+ + + +
Sbjct: 414 HY-ACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHL 470


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 375/713 (52%), Gaps = 45/713 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
            S+LL    S + LK    +HG I  SGL  ++   + L+S +A +G       + ++F  
Sbjct: 456  SALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSED---AELVFHT 512

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            +   ++  WN++M  +        A++L   ML K   + N  TF   L++C  L   K 
Sbjct: 513  MPARDLISWNSMMASHVEDGKYSHAILLLVEML-KTRKAMNYVTFTTALSACYNLEKLKI 571

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
               +H  +I F +  +L I N L+  Y  FG ++ A KV +    RD+V++N LI G+A 
Sbjct: 572  ---VHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHAD 628

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             K+P   +  F  M+   +  +  T V +   C                      +  + 
Sbjct: 629  DKDPNATIQAFNLMRREGLLSNYITIVNLLGTC----------------------MSPDY 666

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            LLK          G+   A  V +  G    T   SS+I+ Y + G +  +  +FD +  
Sbjct: 667  LLKH---------GMPIHAHIVVA--GFELDTYVQSSLITMYAQCGDLNTSSYIFDVLAN 715

Query: 308  RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            ++  +W A+ S  +  G   +AL+   +M + G+  D+ +    L     L  LD G++L
Sbjct: 716  KNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQL 775

Query: 368  HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
            H  +I  + F  + ++  A +DMY KCG ID    +   IPK +++   +N +IS LA+H
Sbjct: 776  HS-WIIKLGFELDEYVLNATMDMYGKCGEIDDVFRIL-PIPK-IRSKRSWNILISALARH 832

Query: 428  GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
            G    +   F EM  +GLKPD VTFV++L ACSHGGLV+EG  +F SM + +G+   +EH
Sbjct: 833  GFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEH 892

Query: 487  YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
              C++DLL R GRL EA G I  MP   N  +WR+LLAAC++H N ++G  A  +L +L 
Sbjct: 893  CVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELN 952

Query: 547  PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
                + YVL SN+ A T RW +   VRK M+   ++K P  S+I+    +  F    + H
Sbjct: 953  SSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFH 1012

Query: 607  PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
            PQ+ +I   L+++    +  G++P+T   + D DEE+KE  +  HSE++ALAFGLINS  
Sbjct: 1013 PQSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAE 1072

Query: 667  KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               +RI KNLR+CGDCH  FKL+S+I  R+I+VRD+ RFH F  G CSC D+W
Sbjct: 1073 GSPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 140/606 (23%), Positives = 261/606 (43%), Gaps = 83/606 (13%)

Query: 24  ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
           A QIHG +V  GL  ++   + L+ F+   G    +  +  LF +I+ PNI  W +LM  
Sbjct: 268 ARQIHGYVVKCGLMSNVFVGTSLLHFYGTHG---SVSEANKLFEEIEEPNIVSWTSLMVC 324

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y+ +   +E L +Y  +   G++   N T   V+ +C        G QI   +IK GL+ 
Sbjct: 325 YADNGHTKEVLNIYRHLRHNGLICTGN-TMATVIRTCGMFGDKTMGYQILGDVIKSGLDT 383

Query: 143 -DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
             + + N+LI  +  +  +  A +VF     RD +S+N++I   A       +L  F  M
Sbjct: 384 SSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWM 443

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           + +  + D  T  A+  AC      + G+  H ++ K+   + SN+ +  ++++MYA+ G
Sbjct: 444 RRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKS--GLESNVCVCNSLLSMYAQAG 501

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-------------- 307
               AE VF TM  ++   +W+SM++ +  +GK   A  L  +M +              
Sbjct: 502 SSEDAELVFHTMP-ARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTAL 560

Query: 308 ----------------------RDLVSWTAMISGYSQVGGFSQALELFGKMES------- 338
                                  +L+    +++ Y + G   +A ++   M         
Sbjct: 561 SACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWN 620

Query: 339 --LGIHPDE----------------------VTMVAVLRACVGLG-ALDFGKRLHQQYIE 373
             +G H D+                      +T+V +L  C+     L  G  +H  +I 
Sbjct: 621 ALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIH-AHIV 679

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  + ++ +++I MYA+CG ++T+  +F  +    K  S +N+I S  A +G GE +
Sbjct: 680 VAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLAN--KNSSTWNAIFSANAHYGPGEEA 737

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
           +     M   G+  D  +F   L    +  +++EG+Q    ++  G +         +D+
Sbjct: 738 LKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDM 797

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGA 551
             + G +D+ + ++  +P   +   W  L++A   H   +    A  ++LD  L+PDH  
Sbjct: 798 YGKCGEIDDVFRIL-PIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVT 856

Query: 552 HYVLLS 557
              LLS
Sbjct: 857 FVSLLS 862



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 208/467 (44%), Gaps = 46/467 (9%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
           F+    + +S    G  +H   +K  ++ + F  N L++ YS FG I  A  VF+    R
Sbjct: 152 FLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDR 211

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG-KQF 232
           +  S+N +I+G+ +V     A+  F  M ++ + P ++   +M +AC        G +Q 
Sbjct: 212 NDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQI 271

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H  V                      KCGLM+    VF            +S++  Y   
Sbjct: 272 HGYV---------------------VKCGLMS---NVF----------VGTSLLHFYGTH 297

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G +  A +LF+++++ ++VSWT+++  Y+  G   + L ++  +   G+     TM  V+
Sbjct: 298 GSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVI 357

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           R C   G    G ++    I++ +   ++ +  ++I M+    S++ A  VF  + +   
Sbjct: 358 RTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQER-D 416

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           T+S +NSII+  A +G  E S+  F  M     K D +T   +L AC     ++ G+   
Sbjct: 417 TIS-WNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLH 475

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
             +   G++  +     ++ + A+ G  ++A  +  +MP   + + W +++A+     + 
Sbjct: 476 GLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP-ARDLISWNSMMAS-----HV 529

Query: 533 KIGEIAGQKLLDLE---PDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
           + G+ +   LL +E        +YV  +  L+  Y  E+ + V   +
Sbjct: 530 EDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFV 576



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/488 (23%), Positives = 211/488 (43%), Gaps = 77/488 (15%)

Query: 72  NIFIWNTLMRGYS-----------------RSDSP--------------QEALVLYTSML 100
           N F  NTL+  YS                 R+D+                +A+  +  M 
Sbjct: 181 NTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMF 240

Query: 101 SKGIVSPNNFTFPFVLNSCARLSSFKSGC-QIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
             G V+P+++    ++ +C R      G  QIH +++K GL  ++F+  +L+HFY   G 
Sbjct: 241 ENG-VTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGS 299

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           ++ A+K+FE     ++VS+ +L+  YA        L ++R ++ + +     T   +   
Sbjct: 300 VSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRT 359

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           C    D  +G Q    V K+ G   S++ +  ++I+M+     +  A RVF+ M   + T
Sbjct: 360 CGMFGDKTMGYQILGDVIKS-GLDTSSVSVANSLISMFGNYDSVEEASRVFNNM-QERDT 417

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            +W+S+I+     G+ E +   F  M +                                
Sbjct: 418 ISWNSIITASAHNGRFEESLGHFFWMRR-------------------------------- 445

Query: 340 GIHP--DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
             HP  D +T+ A+L AC     L +G+ LH   I       N+ +  +++ MYA+ GS 
Sbjct: 446 -THPKTDYITISALLPACGSAQHLKWGRGLH-GLITKSGLESNVCVCNSLLSMYAQAGSS 503

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
           + A  VF+ +P   + +  +NS+++   + G    +I +  EM       + VTF T L 
Sbjct: 504 EDAELVFHTMPA--RDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALS 561

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           AC +   +E+ K     ++++ +   +     +V +  + G +DEA  + + MP + + V
Sbjct: 562 ACYN---LEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ERDVV 617

Query: 518 IWRALLAA 525
            W AL+  
Sbjct: 618 TWNALIGG 625



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 198/478 (41%), Gaps = 47/478 (9%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRS 61
           R  + + +    L +C +L++   +H  ++H  ++H+ I  + L++ +   G  +   + 
Sbjct: 548 RKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKV 607

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             +  + D   +  WN L+ G++    P   +  +  M  +G++S N  T   +L +C  
Sbjct: 608 CKIMPERD---VVTWNALIGGHADDKDPNATIQAFNLMRREGLLS-NYITIVNLLGTCMS 663

Query: 122 LSS-FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                K G  IH HI+  G E D +++++LI  Y+  G +N +  +F+    ++  ++N 
Sbjct: 664 PDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNA 723

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           + +  A       AL    +M++  +  D F+F    +    L     G+Q H+ + K L
Sbjct: 724 IFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIK-L 782

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G      +L  A ++MY KCG ++   R+     + +S  +W+ +IS   R G       
Sbjct: 783 GFELDEYVLN-ATMDMYGKCGEIDDVFRILPIPKI-RSKRSWNILISALARHGF------ 834

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                                    F QA E F +M  LG+ PD VT V++L AC   G 
Sbjct: 835 -------------------------FRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGL 869

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +D G                I     +ID+  + G +  A     K+P       ++ S+
Sbjct: 870 VDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEF-VWRSL 928

Query: 421 ISGLAQHG---LGETSIAVFREMELMGLKPDGVTFVTVLCACSH-GGLVEEGKQFFES 474
           ++    HG   LG    A  R  EL           + +CA +   G VE  ++  ES
Sbjct: 929 LAACKVHGNLELGRK--AADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMES 984



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 156/368 (42%), Gaps = 47/368 (12%)

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
           +E+++  +GK  HA+  K++  +  N      ++NMY+K G                   
Sbjct: 158 SEISEGNVGKALHALCVKDV--IQQNTFYTNTLVNMYSKFG------------------- 196

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
                         I+ A+ +FD+M  R+  SW  MISG+ +VG + +A++ F  M   G
Sbjct: 197 -------------SIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENG 243

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + P    + +++ AC   G +  G R    Y+       N+F+ T+++  Y   GS+  A
Sbjct: 244 VTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEA 303

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             +F +I +    +  + S++   A +G  +  + ++R +   GL   G T  TV+  C 
Sbjct: 304 NKLFEEIEE--PNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCG 361

Query: 461 HGGLVEEGKQFFESMLNYGIK-PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
             G    G Q    ++  G+    +     ++ +      ++EA  +  +M  + +++ W
Sbjct: 362 MFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQ-ERDTISW 420

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML-----AETYRWEEARQVRK 574
            +++ A     N +  E  G             Y+ +S +L     A+  +W   R +  
Sbjct: 421 NSIITASA--HNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKW--GRGLHG 476

Query: 575 LMDDSGIQ 582
           L+  SG++
Sbjct: 477 LITKSGLE 484


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/582 (37%), Positives = 342/582 (58%), Gaps = 46/582 (7%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           ++   N LI+ +   G +++A KVF+  L R++ ++N +++G  Q +     L+LFR+M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +    PD FT  ++   C  L     GKQ HA V K       N+++ +++ +MY K G 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKY--GYEFNLVVGSSLAHMYMKSGS 139

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +   E+V   M +                                R++V+W  +I+G +Q
Sbjct: 140 LGEGEKVIKAMRI--------------------------------RNVVAWNTLIAGNAQ 167

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN-- 380
            G F   L+L+  M+  G+ PD++T+V+V+ +   L  L  G+++H + I+    G N  
Sbjct: 168 NGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKA---GANSA 224

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKI--PKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
           + + +++I MY+KCG ++ ++        P ++    L++S+I+    HG GE ++ +F 
Sbjct: 225 VAVLSSLISMYSKCGCLEDSMKALLDCEHPDSV----LWSSMIAAYGFHGRGEEAVHLFE 280

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARD 497
           +ME  GL  + VTF+++L ACSH GL E+G  FF+ M+  YG+KP++EHY C+VDLL R 
Sbjct: 281 QMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRS 340

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           G LDEA  +I+SMP +A+ VIW+ LL+ACR+HRNA +     +++L L P   A YVLLS
Sbjct: 341 GCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLS 400

Query: 558 NMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLK 617
           N+ A   RW++  +VR  M D  ++K PG S++E    + +F    KSHP ++EI+L LK
Sbjct: 401 NIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLK 460

Query: 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLR 677
           ++  ++K  GYVP+T  V  D D EEKE  +  HSEKLA+AFGL+N      IR+ KNLR
Sbjct: 461 ELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLR 520

Query: 678 ICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IC DCH+A KL+S+I  REI+VRD  RFH FK G CSC D+W
Sbjct: 521 ICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 182/391 (46%), Gaps = 39/391 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N+  WN ++ G  + +  +  L L+  M   G + P+ FT   VL  CA L 
Sbjct: 45  VFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFL-PDEFTLGSVLRGCAGLR 103

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +  +G Q+H +++K+G EF+L + ++L H Y   G +    KV +    R++V++NTLI 
Sbjct: 104 ASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIA 163

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G AQ       L L+  M+ S ++PD  T V++ S+  EL     G+Q HA   K     
Sbjct: 164 GNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIK--AGA 221

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            S + + +++I+MY+KCG +  + +         S   WSSMI+ Y   G+ E A  LF+
Sbjct: 222 NSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSV-LWSSMIAAYGFHGRGEEAVHLFE 280

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           QM+Q  L             GG                  ++VT +++L AC   G  + 
Sbjct: 281 QMEQEGL-------------GG------------------NDVTFLSLLYACSHNGLKEK 309

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G    +  +E       +   T V+D+  + G +D A ++   +P     V ++ +++S 
Sbjct: 310 GMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVV-IWKTLLSA 368

Query: 424 LAQHGLGETSIAVFREMELMGLKP-DGVTFV 453
              H      +A     E++ L P D  T+V
Sbjct: 369 CRIH--RNADMATRTAEEILRLNPQDSATYV 397


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/700 (33%), Positives = 387/700 (55%), Gaps = 49/700 (7%)

Query: 27  IHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85
           +HG  +   L+  +  ++ L+  ++  GC N    ++++F   +N N+  WNT++ G+S 
Sbjct: 311 VHGLAMKLSLDKEVVVNNALMDMYSKCGCIND---AQVIFKLNNNKNVVSWNTMVGGFSA 367

Query: 86  SDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF-- 142
           +    +   L   ML+ G  +  +  T    +  C   S   +  ++HC+ +K   EF  
Sbjct: 368 AGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLK--QEFVH 425

Query: 143 -DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM 201
            +  + NA +  Y+  G ++ AH+VF    ++ + S+N LI GY+Q  +P  +L  + +M
Sbjct: 426 NNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQM 485

Query: 202 QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           + S + PD FT  ++ SAC+++   ++GK+ H ++ +N                      
Sbjct: 486 KSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR--------------------- 524

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYS 321
                        + + +  + S++S Y   G++  A  LFD M+ + LVSW  M++GY 
Sbjct: 525 -------------LERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381
           Q G   +AL LF +M   G+ P E++M++V  AC  L +L  G+  H  Y    +   N 
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHG-YALKCLLEDNA 630

Query: 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441
           F+  +VIDMYAK GS+  +  VF  + +  ++V+ +N+++ G   HG  + +I +F EM+
Sbjct: 631 FIACSVIDMYAKNGSVMESFKVFNGLKE--RSVASWNAMVMGYGIHGRAKEAIKLFEEMQ 688

Query: 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRL 500
             G  PD +TF+ VL AC+H GLV EG  + + M   +G+ P ++HY C++D+L R G+L
Sbjct: 689 RTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKL 748

Query: 501 DEAYGL-IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           DEA  +  + M  +    IW  LL++CR+H+N ++GE    KL   EP+   +YVLLSN+
Sbjct: 749 DEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNL 808

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            A + +W+E R+VR+ M +  ++K  G S+IE NG +  F+A + S    +EI+ +   +
Sbjct: 809 YAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVL 868

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
             ++   GY P+T  V  D+ EEEK   +  HSEKLA+ +GLI +    T+R+ KNLRIC
Sbjct: 869 EREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRIC 928

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH A KL+S++  REI+VRD  RFH FK G CSC D+W
Sbjct: 929 VDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/599 (23%), Positives = 281/599 (46%), Gaps = 99/599 (16%)

Query: 19  KSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           K ++   +IH  +  S    N  +  +++I+ +++ G  +    SR +F  +   N+F W
Sbjct: 95  KDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDD---SRSVFDALRKKNLFQW 151

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           N ++  YSR++     L ++  M+++  + P+NFTFP V+ +CA +S  + G  +H  ++
Sbjct: 152 NAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVV 211

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ--VKEPCPA 194
           K  L  D+F+ NAL+ FY   G +++A +VF+    R+LVS+N++I  ++   + E C  
Sbjct: 212 KTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFL 271

Query: 195 LW--LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
           L   +  K  +    PD  T   +   C    +  +GK  H +  K    +   +++  A
Sbjct: 272 LLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKL--SLDKEVVVNNA 329

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-----DQ 307
           +++MY+KCG +N A+ +F  +  +K+  +W++M+ G++  G I +   L  QM     D 
Sbjct: 330 LMDMYSKCGCINDAQVIFK-LNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDL 388

Query: 308 R--------------------------------------DLVSWTAMISGYSQVGGFSQA 329
           R                                      +LV+  A ++ Y++ G  S A
Sbjct: 389 RADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVA-NAFVASYAKCGSLSYA 447

Query: 330 LELFGKMESLGIH-------------------------------PDEVTMVAVLRACVGL 358
             +F  + S  ++                               PD  T+ ++L AC  +
Sbjct: 448 HRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQI 507

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            +L  GK +H   I N +  R+ F+  +++ +Y  CG + TA  +F  +    KT+  +N
Sbjct: 508 KSLKLGKEVHGLIIRNRL-ERDSFVYISLLSLYIHCGELSTAHVLFDAMED--KTLVSWN 564

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
           ++++G  Q+G  E ++++FR+M L G++P  ++ ++V  ACS    +  G++       Y
Sbjct: 565 TMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAH----GY 620

Query: 479 GIKPQMEHYG----CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
            +K  +E        ++D+ A++G + E++ +   +  + +   W A++    +H  AK
Sbjct: 621 ALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLK-ERSVASWNAMVMGYGIHGRAK 678



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 211/427 (49%), Gaps = 52/427 (12%)

Query: 4   LVLEHSSLLALLE-SCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSR 62
           +  E S L  L E  C SLKQ      + VH   N+ + ++  ++ +A  G    L  + 
Sbjct: 401 VCFEESVLPNLKELHCYSLKQ------EFVH---NNELVANAFVASYAKCG---SLSYAH 448

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F  I +  +  WN L+ GYS+S  P+ +L  Y  M S G++ P+ FT   +L++C+++
Sbjct: 449 RVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLL-PDLFTVCSLLSACSQI 507

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            S K G ++H  II+  LE D F+  +L+  Y   G ++ AH +F+    + LVS+NT++
Sbjct: 508 KSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMV 567

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           NGY Q   P  AL LFR+M    +QP   + +++F AC+ L   R+G++ H    K L  
Sbjct: 568 NGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCL-- 625

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
           +  N  +  +VI+MYAK G +  + +VF+ +   +S A+W++M+ GY   G+ +      
Sbjct: 626 LEDNAFIACSVIDMYAKNGSVMESFKVFNGL-KERSVASWNAMVMGYGIHGRAK------ 678

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
                                    +A++LF +M+  G  PDE+T + VL AC   G + 
Sbjct: 679 -------------------------EAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVH 713

Query: 363 FGKRLHQQYIENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
            G     Q     +FG N  L     VIDM  + G +D AL +  +       V ++N +
Sbjct: 714 EGLTYLDQM--KTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFL 771

Query: 421 ISGLAQH 427
           +S    H
Sbjct: 772 LSSCRIH 778



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 164/386 (42%), Gaps = 55/386 (14%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQID 69
           SLL+     KSLK   ++HG I+ + L     S   IS  +L      L  + +LF  ++
Sbjct: 499 SLLSACSQIKSLKLGKEVHGLIIRNRLER--DSFVYISLLSLYIHCGELSTAHVLFDAME 556

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +  +  WNT++ GY ++  P+ AL L+  M+  G V P   +   V  +C+ L S + G 
Sbjct: 557 DKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYG-VQPCEISMMSVFGACSLLPSLRLGR 615

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           + H + +K  LE + FI  ++I  Y+  G +  + KVF G   R + S+N ++ GY    
Sbjct: 616 EAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHG 675

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF---------HAVVYKNL 240
               A+ LF +MQ +   PD  TF+ + +AC        G  +              K+ 
Sbjct: 676 RAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHY 735

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAE--------------RVFSTMGMSKSTAA----- 281
            CV  +ML++   ++   K     M+E              R+   + M +  AA     
Sbjct: 736 ACV-IDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVS 794

Query: 282 ----------WSSMISGYTREGKIERARQLFDQMDQRDLV--SWTAM-------ISGYSQ 322
                      S++ +G  +  ++ + RQ   +M  R     SW  +       ++G S 
Sbjct: 795 EPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESS 854

Query: 323 VGGFSQALELFGKME----SLGIHPD 344
           + GF +   L+  +E     +G  PD
Sbjct: 855 LDGFEEIKSLWSVLEREIGKMGYRPD 880


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/470 (45%), Positives = 301/470 (64%), Gaps = 9/470 (1%)

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           ++I+ YA  G +  A+R+F  + ++ +   W+SM++G+ R G +E AR++F++M +RDLV
Sbjct: 82  SMIHGYAVSGDVGSAQRLFERV-LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLV 140

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           SW AMISG        +AL LF  M   G  P+  T+V+VL AC G GAL+ GK +H  +
Sbjct: 141 SWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHV-F 199

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           +E      + FL TA++DMYAKCG+++ AL VF  +    +    +N++I+GLA +G   
Sbjct: 200 VEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGL--RARNTCTWNAMINGLAMNGYSA 257

Query: 432 TSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGC 489
            ++ +FR+MEL G + PD VTFV VL ACSH G V+ GK+ F ++   YG++  +EHY C
Sbjct: 258 KALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYAC 317

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MVDLLAR G L EA+ LI  MP   + V+WRALL  CRLH+N K+ E     + ++E   
Sbjct: 318 MVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATC 374

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              +VLLSN+ A   RW     VR+ M   GI+K PG S +E +G++H F++  KSHP  
Sbjct: 375 SGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSY 434

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
            +I   L ++  +++  GYV  T +V +D+++EEKE  + YHSEKLA+AFGLI    + T
Sbjct: 435 DDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEAT 494

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRI KNLR C DCH   KL+S+IY REI+VRD  RFH F+ G CSC DFW
Sbjct: 495 IRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 143/293 (48%), Gaps = 10/293 (3%)

Query: 54  CKNGLFRS-RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           C+ G   S R +F ++   ++  WN ++ G   +  P EAL L+  M+ +G V PN  T 
Sbjct: 119 CRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV-PNRGTV 177

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             VL++C    + ++G  +H  + K  L +D F+  AL+  Y+  G +  A +VF G  A
Sbjct: 178 VSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRA 237

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
           R+  ++N +ING A       AL +FR+M+ +  + PD  TFV +  AC+       GK+
Sbjct: 238 RNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKE 297

Query: 232 -FHAVVYKNLGCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            F+ +  K     G  ++L+    ++++ A+ G +  A ++ + M M      W +++ G
Sbjct: 298 HFYTIPQK----YGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGG 353

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
                 ++ A  +  +M+         + + Y+ VG ++   ++   M S GI
Sbjct: 354 CRLHKNVKMAENVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGI 406



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 151/376 (40%), Gaps = 102/376 (27%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA---- 186
           +H    K G        NA I  Y   G + +A +VF+G   RD VS+N++I+GYA    
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 187 ---------QVKEPCPALW----------------------------------------- 196
                    +V  P P  W                                         
Sbjct: 93  VGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGN 152

Query: 197 --------LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                   LFR M +    P+  T V++ SACT       GK  H  V K    +  +  
Sbjct: 153 RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKR--LRWDEF 210

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           L TA+++MYAKCG + +A  VF+ +  +++T  W++MI+G                    
Sbjct: 211 LGTALVDMYAKCGAVELALEVFTGL-RARNTCTWNAMINGLA------------------ 251

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLG-IHPDEVTMVAVLRACVGLGALDFGKRL 367
                   ++GYS     ++AL++F +ME  G + PDEVT V VL AC   G +D GK  
Sbjct: 252 --------MNGYS-----AKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKE- 297

Query: 368 HQQYIENVVFGRNIFLT--TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
              Y     +G  + L     ++D+ A+ G +  A  +  ++P     V ++ +++ G  
Sbjct: 298 -HFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVV-VWRALLGGCR 355

Query: 426 QHGLGETSIAVFREME 441
            H   + +  V  EME
Sbjct: 356 LHKNVKMAENVISEME 371


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/713 (32%), Positives = 384/713 (53%), Gaps = 50/713 (7%)

Query: 19  KSLKQALQIHGQIV--HSGLNHH----ISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           K+L     IH Q++  +    HH     +  QL S   L    + L  +R LF ++   +
Sbjct: 26  KNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRS 85

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
           +  +N LM GY  S    E + L+ +M+S  +  PN + F  VL++CA       G Q H
Sbjct: 86  VVSYNVLMGGYLHSGEHLEVVKLFKNMVSS-LYQPNEYVFTTVLSACAHSGRVFEGMQCH 144

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-----DLVSYNTLINGYAQ 187
             + KFGL F  F++++L+H YS   +++ A +V E          D   YN+++N   +
Sbjct: 145 GFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVE 204

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ +  +M D  +  D+ T+V++   C ++ D  +G Q HA + K  G +  ++
Sbjct: 205 SGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLK--GGLTFDV 262

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + + +++M+ KCG                                 +  AR++FD +  
Sbjct: 263 FVGSMLVDMFGKCG--------------------------------DVLSARKVFDGLQN 290

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R++V WT++++ Y Q G F + L L   M+  G   +E T   +L A  G+ AL  G  L
Sbjct: 291 RNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLL 350

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H + +E +     + +  A+I+MY+KCG ID++  VF+ +    + +  +N++I G +QH
Sbjct: 351 HAR-VEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRN--RDIITWNAMICGYSQH 407

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEH 486
           GLG+ ++ +F++M   G  P+ VTFV VL AC+H  LV EG  +   ++ ++ ++P +EH
Sbjct: 408 GLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEH 467

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y C+V +L R G L+EA   +++     + V WR LL AC +HRN  +G    + +L ++
Sbjct: 468 YTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMD 527

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P     Y LLSNM A+   W+    +RK+M +  ++K PG S+IE    +H F +   +H
Sbjct: 528 PRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNH 587

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P+  +I   ++ +   +K  GYVPN   V+ DV++E+KE+ ++YHSEKLA+A+GL+   S
Sbjct: 588 PECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPS 647

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+ KNLRIC DCH A KL+S++  R I+VRDA RFH F+ G C+C D W
Sbjct: 648 PAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 157/317 (49%), Gaps = 9/317 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           S++ L    + L   LQ+H Q++  GL   +   S L+  F   G    +  +R +F  +
Sbjct: 232 SVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCG---DVLSARKVFDGL 288

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            N N+ +W +LM  Y ++   +E L L + M  +G +S N FTF  +LN+ A +++ + G
Sbjct: 289 QNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMS-NEFTFAVLLNAFAGMAALRHG 347

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H  + K G++  + + NALI+ YS  G I++++ VF     RD++++N +I GY+Q 
Sbjct: 348 DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQH 407

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL LF+ M  +   P+  TFV + SAC  L     G  +   + K+   V   + 
Sbjct: 408 GLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFK-VEPGLE 466

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---QM 305
             T V+ +  + G++  AE    T  +     AW  +++            ++ +   QM
Sbjct: 467 HYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQM 526

Query: 306 DQRDLVSWTAMISGYSQ 322
           D RD+ ++T + + Y++
Sbjct: 527 DPRDMGTYTLLSNMYAK 543


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/653 (35%), Positives = 356/653 (54%), Gaps = 49/653 (7%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+    P  L SC      ++   +H   +  GL  D F+ ++L+H Y   G    A  V
Sbjct: 18  PDPHLLPSALKSCPAQPLARA---LHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM---------- 216
           F+    +++V ++ LI GY+   +   A  L  +M+ + ++P+  T+  +          
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 217 -------------------------FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
                                     SA  ++ +  +GKQ H  V K  GC   +  + T
Sbjct: 135 LDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVK-AGCR-LDACVVT 192

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR--- 308
           A+I+MY KCG  +   RVF         A+ +++++G +R  ++  A  LF +   R   
Sbjct: 193 ALIDMYGKCGRADEIVRVFHESS-HMDVASCNALVAGLSRNAQVSEALLLFREFICRGVE 251

Query: 309 -DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
            ++VSWT++++   Q G   +A++LF  M+S+G+ P+ VT+  VL A   + AL  G+  
Sbjct: 252 LNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSA 311

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H   +    F  ++++ +A++DMYAKCG    A ++F  +P   + V  +N++I G A H
Sbjct: 312 HCFSLRKG-FLHDVYVGSALVDMYAKCGKARHARTIFDAMPS--RNVVSWNAMIGGYAMH 368

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G    ++ +F  M+    KPD VTF  VL ACS  GL EEG+++F  M   +GI P+MEH
Sbjct: 369 GDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEH 428

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           Y CMV LL R G+LDEAY LI  MP++ +S IW +LL +CR++ N  + E+A +KL  LE
Sbjct: 429 YACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLE 488

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
           P +  +YVLLSN+ A    W+   +VR  M + G++K  G S+IE    +H  LA   SH
Sbjct: 489 PGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSH 548

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           P    I   L  +T+++   G+ P+   V+ DV+E+EK+ +++ HSEKLA+A GLI++R 
Sbjct: 549 PMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRP 608

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              +R+ KNLRICGDCH A K +S   +REI VRD  RFH FK G CSC D+W
Sbjct: 609 GTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 12/344 (3%)

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           PN+  WN L+ G +RS    +A+     M S+G   P+       L++   +     G Q
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFF-PDATGVSCALSAVGDVKEVSVGKQ 174

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H +++K G   D  +  ALI  Y   G  +   +VF  S   D+ S N L+ G ++  +
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV-VYKNLGCVG--SNM 247
              AL LFR+     ++ +  ++ ++ + C +      G+   AV +++ +  +G   N 
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQ-----NGRDLEAVDLFRTMQSIGVEPNS 289

Query: 248 LLKTAVINMYAKCGLM--NMAERVFS-TMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +    V+  +A    +    +   FS   G        S+++  Y + GK   AR +FD 
Sbjct: 290 VTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDA 349

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  R++VSW AMI GY+  G  + A++LF  M+     PD VT   VL AC   G  + G
Sbjct: 350 MPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEG 409

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           +R   +  +       +     ++ +  + G +D A  +  ++P
Sbjct: 410 RRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMP 453



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 137/322 (42%), Gaps = 39/322 (12%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S  L+ +   K +    Q+HG +V +G        + LI  +   G  + + R   +F +
Sbjct: 157 SCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVR---VFHE 213

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI----------------------- 104
             + ++   N L+ G SR+    EAL+L+   + +G+                       
Sbjct: 214 SSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEA 273

Query: 105 -----------VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153
                      V PN+ T P VL + A +++   G   HC  ++ G   D+++ +AL+  
Sbjct: 274 VDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDM 333

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           Y+  G   +A  +F+   +R++VS+N +I GYA   +   A+ LF  MQ    +PD  TF
Sbjct: 334 YAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTF 393

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             +  AC++      G+++   + +  G +   M     ++ +  + G ++ A  + + M
Sbjct: 394 TCVLGACSQAGLTEEGRRYFNEMQQGHG-ISPRMEHYACMVTLLGRSGKLDEAYDLINEM 452

Query: 274 GMSKSTAAWSSMISGYTREGKI 295
                +  W S++      G +
Sbjct: 453 PFEPDSCIWGSLLGSCRVYGNV 474


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 332/562 (59%), Gaps = 39/562 (6%)

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +N A  +F G        + T+I GY        AL  + +M +  I+PD FT+  +  A
Sbjct: 83  MNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKA 142

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT L   R GKQ H  V+K LG + +++ ++ ++INMY +C                   
Sbjct: 143 CTRLKAIREGKQIHGHVFK-LG-LEADVFVQNSLINMYGRC------------------- 181

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ES 338
                        G++E +  +F++++ +   SW++M S    +G +S+ L LF +M   
Sbjct: 182 -------------GEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRE 228

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
             +  +E  MV+ L AC   GAL+ G  +H   + N+    NI + T+++DMY KCG ID
Sbjct: 229 TNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNIS-ELNIIVKTSLVDMYVKCGCID 287

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            AL +F K+ K  +    ++++ISG A HG GE+++ +F EM   GL+PD V +V++L A
Sbjct: 288 NALHIFQKMEK--RNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNA 345

Query: 459 CSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV+EG++ F  ML  G ++P  EHYGC+VDLL R G L+EA   IQS+P + N V
Sbjct: 346 CSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDV 405

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +WR+ L+ CR+H+N ++G+IA Q+LL L   +   Y+L+SNM ++ + W++  + R  + 
Sbjct: 406 VWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVARSRTEIA 465

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
             G+++ PG+S ++  G  HRF++  +SHPQ KEI  ML  M  +LK  GY P+  Q++ 
Sbjct: 466 IKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSPDLTQILL 525

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           +VDEEEK+  +  HS+K+A+AF L+ +     I+I +NLR+C DCH   K +S IY REI
Sbjct: 526 NVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREI 585

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           +VRD  RFHLFK G CSC D+W
Sbjct: 586 VVRDRNRFHLFKGGTCSCKDYW 607



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 198/400 (49%), Gaps = 38/400 (9%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQ--LISFFALSGCKNGLFRSRILFSQID 69
           L LL+ C ++ +  Q+H + +   L    S S   +++  A SG +N +  +  +F  ID
Sbjct: 35  LYLLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRGID 94

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +P  F + T++RGY    S + AL  Y  M+ +GI  P+NFT+P +L +C RL + + G 
Sbjct: 95  DPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGI-EPDNFTYPCLLKACTRLKAIREGK 153

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           QIH H+ K GLE D+F++N+LI+ Y   G +  +  VFE    +   S++++ +    + 
Sbjct: 154 QIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMG 213

Query: 190 EPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                L LFR+M +++ ++ +    V+  SAC       +G   H  + +N+  +  N++
Sbjct: 214 MWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISEL--NII 271

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +KT++++MY KCG ++ A  +F  M   ++   +S+MISG+   G+ E A ++F +M + 
Sbjct: 272 VKTSLVDMYVKCGCIDNALHIFQKME-KRNNLTYSAMISGFALHGEGESALRMFSEMIKE 330

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
                                          G+ PD V  V++L AC   G +  G+R+ 
Sbjct: 331 -------------------------------GLEPDHVVYVSLLNACSHSGLVKEGRRVF 359

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            + ++             ++D+  + G ++ AL     IP
Sbjct: 360 GEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIP 399



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 12/308 (3%)

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
           E  +  A  +F  +D      +  MI GY     F  AL  + +M   GI PD  T   +
Sbjct: 80  ENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCL 139

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L+AC  L A+  GK++H  ++  +    ++F+  ++I+MY +CG ++ + +VF K+    
Sbjct: 140 LKACTRLKAIREGKQIH-GHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKL--EF 196

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           K+ + ++S+ S     G+    + +FREM     LK +    V+ L AC++ G +  G  
Sbjct: 197 KSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMS 256

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
               +L    +  +     +VD+  + G +D A  + Q M    N++ + A+++   LH 
Sbjct: 257 IHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKME-KRNNLTYSAMISGFALHG 315

Query: 531 NAKIGEIAGQKLLD--LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
             +       +++   LEPDH   YV L N  + +   +E R+V   M   G  +P    
Sbjct: 316 EGESALRMFSEMIKEGLEPDHVV-YVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTA-- 372

Query: 589 YIEHNGTL 596
             EH G L
Sbjct: 373 --EHYGCL 378



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 130/278 (46%), Gaps = 8/278 (2%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           LL++C   K++++  QIHG +   GL   +   + LI+ +   G    +  S  +F +++
Sbjct: 139 LLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCG---EMELSSTVFEKLE 195

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W+++           E L+L+  M  +  +          L++CA   +   G 
Sbjct: 196 FKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGM 255

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            IH  +++   E ++ ++ +L+  Y   G I+NA  +F+    R+ ++Y+ +I+G+A   
Sbjct: 256 SIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHG 315

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           E   AL +F +M    ++PD   +V++ +AC+     + G++    + K  G V      
Sbjct: 316 EGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKE-GKVEPTAEH 374

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
              ++++  + GL+  A     ++ + ++   W S +S
Sbjct: 375 YGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLS 412


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 346/590 (58%), Gaps = 33/590 (5%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + LIS    SG  +   R   LF  +  P+   WN+++ G+++ D  +E+L  +  M  +
Sbjct: 85  NSLISVLTKSGFLDEAAR---LFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHRE 141

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
             +  N ++F   L++CA L     G Q+H  + K     D+++ +ALI  YS  G +  
Sbjct: 142 DFL-LNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVAC 200

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A +VF G + R+LV++N+LI  Y Q      AL +F +M DS ++PD  T  ++ SAC  
Sbjct: 201 AEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACAS 260

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L   + G Q HA V K       +++L  A+++MYAKC  +N A RVF  M + ++  + 
Sbjct: 261 LCALKEGLQIHARVVKT-NKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI-RNVVSE 318

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           +SM+SGY R   ++ AR +F +M QR++VSW A+I+GY+Q G   +AL LF  ++   I 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
           P   T   +L++                         +IF+  ++IDMY KCGSI+    
Sbjct: 379 PTHYTFGNLLKS-------------------------DIFVGNSLIDMYMKCGSIEDGSR 413

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF K+ K    VS +N+II G AQ+G G  ++ +FR+M + G KPD VT + VLCACSH 
Sbjct: 414 VFEKM-KERDCVS-WNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHA 471

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           GLVEEG+ +F SM  +G+ P  +HY CMVDLL R G L+EA  LI++MP + ++V+W +L
Sbjct: 472 GLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSL 531

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           LAAC++H N ++G+ A +KLL+++P +   YVLLSNM AE  RW +  +VRKLM   G+ 
Sbjct: 532 LAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVT 591

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           K PG S+IE    +H FL   KSHP  K+I  +LK +T ++K  GY+P+ 
Sbjct: 592 KQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDA 641



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 160/305 (52%), Gaps = 9/305 (2%)

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
           P++  F  +  +C      R  +  HA +   +      + ++  +I++Y KC  ++ A 
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARIL--MTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
           ++F  M   ++T  W+S+IS  T+ G ++ A +LF  M + D  SW +M+SG++Q   F 
Sbjct: 71  KLFDRMP-QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFE 129

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           ++LE F KM       +E +  + L AC GL  L+ G ++H   +    +  ++++ +A+
Sbjct: 130 ESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH-ALVSKSRYSTDVYMGSAL 188

Query: 388 IDMYAKCGSIDTALSVFYK-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           IDMY+KCGS+  A  VF   I +NL T   +NS+I+   Q+G    ++ VF  M   GL+
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVT---WNSLITCYEQNGPASEALEVFVRMMDSGLE 245

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYG 505
           PD VT  +V+ AC+    ++EG Q    ++     +  +     +VD+ A+  +++EA  
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 506 LIQSM 510
           +   M
Sbjct: 306 VFDRM 310


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 324/555 (58%), Gaps = 40/555 (7%)

Query: 170 SLARDLVSYNTLINGYAQVKEPCP---ALWLFRKMQDSCIQPDAFTFVAMFSACTELND- 225
           S+  D    NTLI  +A    P     A   F  M  S + P+ FTF  +  AC  L   
Sbjct: 88  SVPIDAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGF 147

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
           P +G Q HA   K  G   ++  +   +I+MY+  G   + +                  
Sbjct: 148 PGVGLQAHAAALK-FG-FATDQYVSNTLIHMYSCFGGEFLGD------------------ 187

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
                       AR +FD+MD+  +V+W+AMI GY + G  S A+ LF +M++ G+ PDE
Sbjct: 188 ------------ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDE 235

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
           VT++ VL A           R   +++E    G+++ L  A+ID  AKCG +D A++VF 
Sbjct: 236 VTVIGVLAA-AADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQ 294

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
            + +  +TV  + S+I  LA  G G+ ++AVF  M+  G++PD V F+ VL ACSH G+V
Sbjct: 295 GMEE--RTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMV 352

Query: 466 EEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           +EG  +F+SM + YGI P++EHYGCMVD+  R G ++ A   I +MP   N +IWR L+A
Sbjct: 353 DEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVA 412

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           ACR H   ++GE   + LL+  P H A+YV+LSN+ A T RW+E  ++R+ M   GI+K 
Sbjct: 413 ACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKV 472

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           PG S +E +G +H F+A  +SHPQ KEI +M+++M  +LK  G++  T +V+ D+DEE+K
Sbjct: 473 PGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDK 532

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           E  + +HSEKLA+AF L+ +     +R+ KNLR+C DCH A K +S +Y REI+VRD  R
Sbjct: 533 EGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSR 592

Query: 705 FHLFKKGNCSCMDFW 719
           FH FK G+CSC DFW
Sbjct: 593 FHRFKNGSCSCNDFW 607



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 40/374 (10%)

Query: 72  NIFIWNTLMRGYSRSDSPQEAL--VLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS-G 128
           + F+ NTL+R ++ S  P   L    +  ++ +  V PN FTFPF+L +CA L  F   G
Sbjct: 92  DAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVG 151

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFG--YINNAHKVFEGSLARDLVSYNTLINGYA 186
            Q H   +KFG   D ++ N LIH YS FG  ++ +A  VF+      +V+++ +I GY 
Sbjct: 152 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYV 211

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +      A+ LFR+MQ S ++PD  T + + +A  +L    + +     V +    +G +
Sbjct: 212 RGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVERE--GIGKS 269

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + L  A+I+  AKCG ++ A  VF  M   ++  +W+S+I     EG+ +          
Sbjct: 270 VTLCNALIDALAKCGDVDGAVAVFQGM-EERTVVSWTSVIDALAMEGRGK---------- 318

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                +A+ +F  M++ G+ PD+V  + VL AC   G +D G  
Sbjct: 319 ---------------------EAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYG 357

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
                         I     ++DM+ + G ++ A+   + +P     + ++ ++++    
Sbjct: 358 YFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPI-IWRTLVAACRA 416

Query: 427 HGLGETSIAVFREM 440
           HG  E   ++ R +
Sbjct: 417 HGRLELGESITRNL 430



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLIS--FFALSGCKNGLF--RSRILFSQID 69
           LL++C +L     +  Q   + L    ++ Q +S     +  C  G F   +R +F ++D
Sbjct: 137 LLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMD 196

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             ++  W+ ++ GY R     +A+ L+  M + G V P+  T   VL + A L + +   
Sbjct: 197 KSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASG-VRPDEVTVIGVLAAAADLGALELAR 255

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +   + + G+   + + NALI   +  G ++ A  VF+G   R +VS+ ++I+  A   
Sbjct: 256 WVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEG 315

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ +F  M+ + ++PD   F+ + +AC+       G  +   +    G +   +  
Sbjct: 316 RGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYG-IDPKIEH 374

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
              +++M+ + G++  A     TM M  +   W ++++     G++E
Sbjct: 375 YGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLE 421


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/689 (33%), Positives = 378/689 (54%), Gaps = 70/689 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVLNSCARL 122
           LF+ +   +I  +N ++ G+S   S  +A+ +Y ++L +   V P+  T   ++ + + L
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
                G Q HC I++ G   + F+ + L+  Y+    + +A + F+   ++++V YNT+I
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 183 NG-------------------------------YAQVKEPCPALWLFRKMQDSCIQPDAF 211
            G                               + Q      AL +FR+M+   I  D +
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQY 273

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           TF ++ +AC  L+    GKQ HA + +       N+ + +A+++MY+KC  + +AE V  
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTR--YDDNVFVGSALVDMYSKCRSIKLAETV-- 329

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                                         F +M  ++++SWTA+I GY Q G   +A+ 
Sbjct: 330 ------------------------------FRRMTCKNIISWTALIVGYGQNGCSEEAVR 359

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           +F +M+  GI PD+ T+ +V+ +C  L +L+ G + H   + + +    I ++ A++ +Y
Sbjct: 360 VFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLM-HYITVSNALVTLY 418

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
            KCGSI+ A  +F ++  +      + +++SG AQ G  + +I +F +M   G+KPDGVT
Sbjct: 419 GKCGSIEDAHRLFDEM--SFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476

Query: 452 FVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+ VL ACS  G VE+G+ +F SM  ++GI P  +HY CM+DL +R G+L EA   I+ M
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P   +++ W  LL+ACRL  + +IG+ A + LL+++P + A YVLL +M A   +W E  
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVA 596

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           Q+R+ M D  ++K PG S+I++   +H F A  +SHP +K I   L+ +  K+   GY P
Sbjct: 597 QLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKP 656

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +   V+ DV + +K  +VS+HSEKLA+AFGLI    +  IRI KNLR+C DCH A K +S
Sbjct: 657 DVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFIS 716

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +I  R+I+VRDA+RFH F  G CSC DFW
Sbjct: 717 KITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 151/490 (30%), Positives = 258/490 (52%), Gaps = 19/490 (3%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM- 201
           +LF  NAL+   +    +++   +F     RD+VSYN +I G++       A+ ++  + 
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 202 -QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
             DS ++P   T   M  A + L D  +GKQFH  + + LG  G+N  + + +++MYAK 
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILR-LG-FGANAFVGSPLVDMYAKM 188

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
            L+  A+R F  +  SK+   +++MI+G  R   +E AR+LF+ M  RD ++WT M++G+
Sbjct: 189 SLVGDAKRAFDEVD-SKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGF 247

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +Q G  S+ALE+F +M   GI  D+ T  ++L AC  L AL+ GK++H  YI    +  N
Sbjct: 248 TQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIH-AYIIRTRYDDN 306

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           +F+ +A++DMY+KC SI  A +VF ++    K +  + ++I G  Q+G  E ++ VF EM
Sbjct: 307 VFVGSALVDMYSKCRSIKLAETVFRRM--TCKNIISWTALIVGYGQNGCSEEAVRVFSEM 364

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
           +  G+ PD  T  +V+ +C++   +EEG QF    L  G+   +     +V L  + G +
Sbjct: 365 QRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSI 424

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL--DLEPDHGAHYVLLSN 558
           ++A+ L   M +  + V W AL++       AK      +K+L   ++PD G  ++ + +
Sbjct: 425 EDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPD-GVTFIGVLS 482

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
             +     E+ R     M     QK  G   I+ + T    L S+    + KE E  +K 
Sbjct: 483 ACSRAGFVEKGRSYFHSM-----QKDHGIVPIDDHYTCMIDLYSRSG--KLKEAEEFIKQ 535

Query: 619 MTMKLKSAGY 628
           M M   + G+
Sbjct: 536 MPMHPDAIGW 545



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 201/452 (44%), Gaps = 76/452 (16%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  + + +   W T++ G++++    EAL ++  M  +GI + + +TF  +L +C 
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGI-AIDQYTFGSILTACG 283

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            LS+ + G QIH +II+   + ++F+ +AL+  YS    I  A  VF     ++++S+  
Sbjct: 284 ALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTA 343

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI GY Q      A+ +F +MQ   I PD +T  ++ S+C  L     G QFH +    +
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLAL--V 401

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +   + +  A++ +Y KCG +  A R+F  M       +W++++SGY           
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQV-SWTALVSGY----------- 449

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                               +Q G   + ++LF KM + G+ PD VT + VL AC   G 
Sbjct: 450 --------------------AQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGF 489

Query: 361 LDFGKR-LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           ++ G+   H    ++ +   +    T +ID+Y++ G +  A     ++P           
Sbjct: 490 VEKGRSYFHSMQKDHGIVPIDDHY-TCMIDLYSRSGKLKEAEEFIKQMP----------- 537

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
                                    + PD + + T+L AC   G +E GK   E++L   
Sbjct: 538 -------------------------MHPDAIGWGTLLSACRLRGDMEIGKWAAENLLE-- 570

Query: 480 IKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM 510
           I PQ    Y  +  + A  G+ +E   L + M
Sbjct: 571 IDPQNPASYVLLCSMHAAKGQWNEVAQLRRGM 602



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 166/327 (50%), Gaps = 9/327 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L    +  +L+Q  QIH  I+ +  + ++   S L+  +  S C++ +  +  +F ++
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMY--SKCRS-IKLAETVFRRM 333

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              NI  W  L+ GY ++   +EA+ +++ M   GI  P+++T   V++SCA L+S + G
Sbjct: 334 TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI-DPDDYTLGSVISSCANLASLEEG 392

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q HC  +  GL   + + NAL+  Y   G I +AH++F+     D VS+  L++GYAQ 
Sbjct: 393 AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQF 452

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                 + LF KM    ++PD  TF+ + SAC+       G+ +   + K+ G V  +  
Sbjct: 453 GRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDH 512

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD---QM 305
             T +I++Y++ G +  AE     M M      W +++S     G +E  +   +   ++
Sbjct: 513 Y-TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEI 571

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALEL 332
           D ++  S+  + S ++  G +++  +L
Sbjct: 572 DPQNPASYVLLCSMHAAKGQWNEVAQL 598


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 384/716 (53%), Gaps = 51/716 (7%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           S+LL +  S ++L+    +HG +V SGL  ++   + L+S ++ +G       +  +F +
Sbjct: 265 SALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSED---AEFVFHK 321

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   ++  WN++M  +  + +   AL L   ML     + N  TF   L++C  L + K 
Sbjct: 322 MRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKAT-NYVTFTTALSACYNLETLKI 380

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              +H  +I  GL  +L I NAL+  Y  FG +  A +V +    RD V++N LI G+A 
Sbjct: 381 ---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHAD 437

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSN 246
            KEP  A+  F  +++  +  +  T V + SA    +D    G   HA +          
Sbjct: 438 NKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIV--------- 488

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                                      G    T   SS+I+ Y + G +  +  +FD + 
Sbjct: 489 -------------------------VAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLA 523

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG-LGALDFGK 365
            ++  +W A++S  +  G   +AL+L  KM + GIH D+ +  +V  A +G L  LD G+
Sbjct: 524 NKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSF-SVAHAIIGNLTLLDEGQ 582

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK-NLKTVSLFNSIISGL 424
           +LH   I++  F  N ++  A +DMY KCG ID    VF  +P+   ++   +N +IS L
Sbjct: 583 QLHSLIIKHG-FESNDYVLNATMDMYGKCGEID---DVFRILPQPRSRSQRSWNILISAL 638

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
           A+HG  + +   F EM  +GL+PD VTFV++L ACSHGGLV+EG  +F SM   +G+   
Sbjct: 639 ARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTG 698

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EH  C++DLL R G+L EA   I  MP     ++WR+LLAAC++H N ++   A  +L 
Sbjct: 699 IEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLF 758

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L+    + YVL SN+ A T RW +   VRK M+   I+K P  S+++    +  F    
Sbjct: 759 ELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGD 818

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           + HPQ  EI   L+++   ++ AGY+P+T   + D DEE+KE  +  HSE++ALAFGLIN
Sbjct: 819 QYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLIN 878

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S     +RI KNLR+CGDCH  FK++S+I  R+I++RDA RFH F  G CSC D+W
Sbjct: 879 SSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 138/605 (22%), Positives = 257/605 (42%), Gaps = 82/605 (13%)

Query: 24  ALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
           A Q+H  ++  GL   +   + L+ F+   G    +    ++F +I+ PNI  W +LM G
Sbjct: 78  AFQVHAHVIKCGLACDVFVGTSLLHFYGTFG---WVAEVDMVFKEIEEPNIVSWTSLMVG 134

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y+ +   +E + +Y  +   G+    N     V+ SC  L     G Q+   +IK GL+ 
Sbjct: 135 YAYNGCVKEVMSVYRRLRRDGVYCNEN-AMATVIRSCGVLVDKMLGYQVLGSVIKSGLDT 193

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
            + + N+LI  +     I  A  VF+    RD +S+N++I           +L  F +M+
Sbjct: 194 TVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMR 253

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
            +  + D  T  A+   C    + R G+  H +V K+   + SN+ +  ++++MY++ G 
Sbjct: 254 YTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKS--GLESNVCVCNSLLSMYSQAGK 311

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--------------- 307
              AE VF  M   +   +W+SM++ +   G   RA +L  +M Q               
Sbjct: 312 SEDAEFVFHKM-RERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALS 370

Query: 308 ---------------------RDLVSWTAMISGYSQVGGFSQA----------------- 329
                                 +L+   A+++ Y + G  + A                 
Sbjct: 371 ACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNA 430

Query: 330 --------------LELFGKMESLGIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIEN 374
                         +E F  +   G+  + +T+V +L A +     LD G  +H  +I  
Sbjct: 431 LIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIH-AHIVV 489

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
             F    F+ +++I MYA+CG ++T+  +F  +    K  S +N+I+S  A +G GE ++
Sbjct: 490 AGFELETFVQSSLITMYAQCGDLNTSNYIFDVLAN--KNSSTWNAILSANAHYGPGEEAL 547

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
            +  +M   G+  D  +F        +  L++EG+Q    ++ +G +         +D+ 
Sbjct: 548 KLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMY 607

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAH 552
            + G +D+ + ++   P   +   W  L++A   H   +    A  ++LD  L PDH   
Sbjct: 608 GKCGEIDDVFRIL-PQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTF 666

Query: 553 YVLLS 557
             LLS
Sbjct: 667 VSLLS 671



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 212/466 (45%), Gaps = 49/466 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   N   WN LM G+ R    Q+A+  +  ML  G V P+++    ++ +C R  
Sbjct: 14  VFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHG-VRPSSYVAASLVTACDRSG 72

Query: 124 SFKSGC-QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
               G  Q+H H+IK GL  D+F+  +L+HFY  FG++     VF+     ++VS+ +L+
Sbjct: 73  CMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLM 132

Query: 183 NGYAQ---VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            GYA    VKE    + ++R+++   +  +      +  +C  L D  +G Q    V K+
Sbjct: 133 VGYAYNGCVKE---VMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKS 189

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              + + + +  ++I+M+  C  +  A  VF  M   + T +W+S+I+     G  E+  
Sbjct: 190 --GLDTTVSVANSLISMFGNCDSIEEASCVFDDM-KERDTISWNSIITASVHNGHCEK-- 244

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                                        +LE F +M       D +T+ A+L  C    
Sbjct: 245 -----------------------------SLEYFSQMRYTHAKTDYITISALLPVCGSAQ 275

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L +G+ LH   +++ +   N+ +  +++ MY++ G  + A  VF+K+ +  + +  +NS
Sbjct: 276 NLRWGRGLHGMVVKSGL-ESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRE--RDLISWNS 332

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           +++    +G    ++ +  EM       + VTF T L AC +   +E  K     ++  G
Sbjct: 333 MMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYN---LETLKIVHAFVILLG 389

Query: 480 IKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +   +     +V +  + G +  A  + + MP D + V W AL+  
Sbjct: 390 LHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP-DRDEVTWNALIGG 434



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 184/434 (42%), Gaps = 53/434 (12%)

Query: 3   RLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRS 61
           R    + +    L +C +L+    +H  ++  GL+H+ I  + L++ +   G      R 
Sbjct: 357 RKATNYVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRV 416

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             +    D      WN L+ G++ +  P  A+  +  +  +G+  P N+     L     
Sbjct: 417 CKIMPDRDE---VTWNALIGGHADNKEPNAAIEAFNLLREEGV--PVNYITIVNL----- 466

Query: 122 LSSFKS-------GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           LS+F S       G  IH HI+  G E + F++++LI  Y+  G +N ++ +F+    ++
Sbjct: 467 LSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKN 526

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
             ++N +++  A       AL L  KM++  I  D F+F    +    L     G+Q H+
Sbjct: 527 SSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHS 586

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           ++ K+     SN  +  A ++MY KCG ++   R+      S+S  +W+ +IS   R G 
Sbjct: 587 LIIKH--GFESNDYVLNATMDMYGKCGEIDDVFRILP-QPRSRSQRSWNILISALARHGF 643

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            ++AR                               E F +M  LG+ PD VT V++L A
Sbjct: 644 FQQAR-------------------------------EAFHEMLDLGLRPDHVTFVSLLSA 672

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C   G +D G                I     +ID+  + G +  A +   K+P    T 
Sbjct: 673 CSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVP-PTD 731

Query: 415 SLFNSIISGLAQHG 428
            ++ S+++    HG
Sbjct: 732 LVWRSLLAACKIHG 745



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 189/429 (44%), Gaps = 51/429 (11%)

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
           YS FG I +A  VF+    R+  S+N L++G+ +V     A+  F  M +  ++P ++  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 214 VAMFSACTELNDPRIGK-QFHAVVYK-NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
            ++ +AC        G  Q HA V K  L C   ++ + T++++ Y   G +   + VF 
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLAC---DVFVGTSLLHFYGTFGWVAEVDMVFK 118

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
            +    +  +W+S++ GY   G ++    ++ ++ +RD                      
Sbjct: 119 EI-EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRL-RRD---------------------- 154

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV---FGRNIFLTTAVI 388
                   G++ +E  M  V+R+C   G L   K L  Q + +V+       + +  ++I
Sbjct: 155 --------GVYCNENAMATVIRSC---GVL-VDKMLGYQVLGSVIKSGLDTTVSVANSLI 202

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
            M+  C SI+ A  VF  + K   T+S +NSII+    +G  E S+  F +M     K D
Sbjct: 203 SMFGNCDSIEEASCVFDDM-KERDTIS-WNSIITASVHNGHCEKSLEYFSQMRYTHAKTD 260

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            +T   +L  C     +  G+     ++  G++  +     ++ + ++ G+ ++A  +  
Sbjct: 261 YITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFH 320

Query: 509 SMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD-LEPDHGAHYVLLSNMLAETYRWE 567
            M  + + + W +++A+   H +      A + L++ L+     +YV  +  L+  Y  E
Sbjct: 321 KMR-ERDLISWNSMMAS---HVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLE 376

Query: 568 EARQVRKLM 576
             + V   +
Sbjct: 377 TLKIVHAFV 385



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MY+K GSI+ A  VF K+P+  +  + +N+++SG  + G  + ++  F  M   G++P  
Sbjct: 1   MYSKFGSIEHAQHVFDKMPE--RNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSS 58

Query: 450 VTFVTVLCACSHGGLVEEG 468
               +++ AC   G + EG
Sbjct: 59  YVAASLVTACDRSGCMTEG 77


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 374/705 (53%), Gaps = 81/705 (11%)

Query: 18  CKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
           CK+L+   QIHG  + SG++       +LI   A+S   + L  +R L      P+ F++
Sbjct: 182 CKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAIS-ISDALPYARRLLLCFPEPDAFMF 240

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
           NTL+RGYS SD P  ++ ++  M+ KG + P++F+F FV+ + A   S ++G Q+HC  +
Sbjct: 241 NTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQAL 300

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           K GL+  LF+   LI  Y   G +  A KVF+     +LV++N                 
Sbjct: 301 KHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWN----------------- 343

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYKNLGCVGSNMLLKTAVIN 255
                             A+ +AC   ND    ++ F  ++ +N      N++L      
Sbjct: 344 ------------------AVVTACFRGNDVSGAREIFDKMLVRNH--TSWNVMLAG---- 379

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
            Y K G +  A+R+FS M   +   +WS+M                              
Sbjct: 380 -YIKAGELECAKRIFSEMP-HRDDVSWSTM------------------------------ 407

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
            I G+S  G F+++   F ++    + P+EV++  VL AC   GA +FGK LH  ++E  
Sbjct: 408 -IVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLH-GFVEKS 465

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            +   + +  A+IDMY++CG++  A  VF  + +    VS + S+I+GLA HG GE +I 
Sbjct: 466 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVS-WTSMIAGLAMHGHGEEAIR 524

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLL 494
           +F EM   G+ PD ++F+++L ACSH GL++EG+ +F  M   Y I+P +EHYGCMVDL 
Sbjct: 525 IFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLY 584

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G+L +AY  I  MP    +++WR LL AC  H N ++ E   Q+L +L+P++    V
Sbjct: 585 GRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLV 644

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LLSN+ A   +W++   +RK M    I+K   WS +E   T+++F A +K      E   
Sbjct: 645 LLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHE 704

Query: 615 MLKDMTMKLKS-AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
            LK++ ++L+  AGY P     ++DV+EEEKE  VS HSEKLALAF L        IRI 
Sbjct: 705 KLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIV 764

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDF 718
           KNLRIC DCH   KL S +Y  EI++RD  RFH FK G+CSC D+
Sbjct: 765 KNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 346/611 (56%), Gaps = 51/611 (8%)

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG-----YINNAHKVFEGSLAR-DLV 176
           ++ ++  Q+H   +K GL+        L+   +  G      ++ A +VF+      D+V
Sbjct: 42  TTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVV 101

Query: 177 SYNTLINGYAQ------VKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
            YNTL+ GYA+       + P   A  +F +M +  + PD +TFV++  AC        G
Sbjct: 102 WYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEG 161

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +Q H V  K +G      +L T +INMYA+CG                            
Sbjct: 162 RQAHGVAVK-VGAAEHEYVLPT-LINMYAECG---------------------------- 191

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                   AR +F ++D   +VS+ AMI+   +     +AL LF +M++ G+    VT++
Sbjct: 192 ----DARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLI 247

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL AC  LGAL+ G+ +H+ Y+  V     + + TA+IDMY KCGS++ A+SVF  +  
Sbjct: 248 SVLSACALLGALELGRWIHE-YVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMES 306

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             +    ++ +I   A H  G  +I++F EM+  G+KPD VTF+ VL ACSH GLV EG 
Sbjct: 307 RDRQA--WSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGL 364

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           Q+F+SM  +G+ P ++HYGC+ DLLAR G+LD AY  I  +P    +++WR LL+AC   
Sbjct: 365 QYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSR 424

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            +A +G+   +++L+L+  HG  YV+ SN+ A T RWEE  +VRKLM++ G+ K PG S 
Sbjct: 425 GDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSS 484

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV-FDVDEEEKETVV 648
           IE +  +H F A    HP++ +   M+  +  +LK AGYVPNT  V   ++ EEEK   +
Sbjct: 485 IEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSL 544

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
            YHSEKLA++FGL+N+    T+R+ KNLR+C DCH   KL+S ++ R I++RD  RFH F
Sbjct: 545 RYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHF 604

Query: 709 KKGNCSCMDFW 719
           + G CSC D+W
Sbjct: 605 EDGVCSCGDYW 615



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 142/512 (27%), Positives = 217/512 (42%), Gaps = 94/512 (18%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNG--LFRSRI 63
           +   LL  L  C +L+   Q+H   V SGL  H +  ++L++     G      L  +R 
Sbjct: 30  QQHPLLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQ 89

Query: 64  LFSQIDNPNIFIW-NTLMRGYSRSDSP-------QEALVLYTSMLSKGIVSPNNFTFPFV 115
           +F +I  P   +W NTL+RGY+R  +        +EA  ++  ML +G V+P+ +TF  +
Sbjct: 90  VFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEG-VAPDTYTFVSL 148

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L +CA   + + G Q H   +K G     ++   LI+ Y+  G    A  +F       +
Sbjct: 149 LKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECV 208

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           VSYN +I    +   P  AL LFR+MQ   ++  + T +++ SAC  L    +G+  H  
Sbjct: 209 VSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEY 268

Query: 236 VYKNLGCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           V K    V  + L+K  TA+I+MY KCG +  A  VF  M  S+   AWS MI  Y    
Sbjct: 269 VRK----VQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM-ESRDRQAWSVMIVAYANH- 322

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                                     Y +     +A+ LF +M+  GI PD+VT + VL 
Sbjct: 323 -------------------------SYGR-----EAISLFEEMKKQGIKPDDVTFLGVLY 352

Query: 354 ACVGLGALDFGKRLHQQYIENV-VFG--RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           AC   G +  G     QY +++  FG    I     V D+ A+ G +D A     ++P  
Sbjct: 353 ACSHSGLVSEG----LQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELP-- 406

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
                                             +KP  + + T+L AC   G  + GKQ
Sbjct: 407 ----------------------------------IKPTAILWRTLLSACGSRGDADLGKQ 432

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            FE +L          Y    +L A  GR +E
Sbjct: 433 VFERILELD-DSHGGDYVIFSNLCANTGRWEE 463


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/599 (37%), Positives = 352/599 (58%), Gaps = 11/599 (1%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F  +  P+   WN ++ G+++ D  +EAL  +  M S+  V  N ++F   L++CA L+
Sbjct: 107 VFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV-LNEYSFGSALSACAGLT 165

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G QIH  I K     D+++ +AL+  YS  G +  A + F+G   R++VS+N+LI 
Sbjct: 166 DLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLIT 225

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            Y Q      AL +F  M D+ ++PD  T  ++ SAC   +  R G Q HA V K     
Sbjct: 226 CYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKR-DKY 284

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            ++++L  A+++MYAKC  +N A  VF  M + ++  + +SM+ GY R   ++ AR +F 
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPL-RNVVSETSMVCGYARAASVKAARLMFS 343

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M ++++VSW A+I+GY+Q G   +A+ LF  ++   I P   T   +L AC  L  L  
Sbjct: 344 NMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKL 403

Query: 364 GKRLHQQYIENVVFGR-----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
           G++ H Q +++  + +     +IF+  ++IDMY KCG ++    VF ++ +  + V  +N
Sbjct: 404 GRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVE--RDVVSWN 461

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LN 477
           ++I G AQ+G G  ++ +FR+M + G KPD VT + VL ACSH GLVEEG+++F SM   
Sbjct: 462 AMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTE 521

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
            G+ P  +H+ CMVDLL R G LDEA  LIQ+MP   ++V+W +LLAAC++H N ++G+ 
Sbjct: 522 LGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKY 581

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             +KL++++P +   YVLLSNM AE  RW++  +VRK M   G+ K PG S+IE    +H
Sbjct: 582 VAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVH 641

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLA 656
            F+   K HP  K+I L+LK +T ++K AGYVP         +E + E V+ +  E  A
Sbjct: 642 VFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEADDDEICEEESDSELVLHFEMETEA 700



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 192/428 (44%), Gaps = 94/428 (21%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           F  +L+SC R  S     +IH  IIK     ++FI+N L+  Y   GY  +A KVF+   
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMP 81

Query: 172 AR-------------------------------DLVSYNTLINGYAQVKEPCPALWLFRK 200
            R                               D  S+N +++G+AQ      AL  F  
Sbjct: 82  QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVD 141

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M       + ++F +  SAC  L D  +G Q HA++ K+   +  ++ + +A+++MY+KC
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLL--DVYMGSALVDMYSKC 199

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G++  A+R F  M + ++  +W+S+I+ Y                               
Sbjct: 200 GVVACAQRAFDGMAV-RNIVSWNSLITCY------------------------------- 227

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
            Q G   +ALE+F  M   G+ PDE+T+ +V+ AC    A+  G ++H + ++   +  +
Sbjct: 228 EQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRND 287

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL---------------------------- 411
           + L  A++DMYAKC  ++ A  VF ++P +N+                            
Sbjct: 288 LVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMME 347

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           K V  +N++I+G  Q+G  E ++ +F  ++   + P   TF  +L AC++   ++ G+Q 
Sbjct: 348 KNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQA 407

Query: 472 FESMLNYG 479
              +L +G
Sbjct: 408 HTQILKHG 415



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 173/342 (50%), Gaps = 17/342 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           ++L+ +   C+ + +A  +  ++    L + +S + ++  +A +        +R++FS +
Sbjct: 292 NALVDMYAKCRRVNEARLVFDRM---PLRNVVSETSMVCGYARAASVKA---ARLMFSNM 345

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+  WN L+ GY+++   +EA+ L+  +L +  + P ++TF  +LN+CA L+  K G
Sbjct: 346 MEKNVVSWNALIAGYTQNGENEEAVRLFL-LLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 129 CQIHCHIIKFGLEF------DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
            Q H  I+K G  F      D+F+ N+LI  Y   G + +   VFE  + RD+VS+N +I
Sbjct: 405 RQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMI 464

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GYAQ      AL +FRKM  S  +PD  T + + SAC+       G+++   +   LG 
Sbjct: 465 VGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGL 524

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
                   T ++++  + G ++ A  +  TM M      W S+++     G IE  + + 
Sbjct: 525 APMKDHF-TCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVA 583

Query: 303 DQMDQRDLVS---WTAMISGYSQVGGFSQALELFGKMESLGI 341
           +++ + D ++   +  + + Y+++G +   + +  +M   G+
Sbjct: 584 EKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGV 625



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           D+  F  +  +C         ++ HA + K      S + ++  +++ Y KCG    A +
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQ--FSSEIFIQNRLVDAYGKCGYFEDARK 75

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           VF  M   ++T ++++++S  T+ GK++ A  +F  M + D  SW AM+SG++Q   F +
Sbjct: 76  VFDRMP-QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEE 134

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           AL  F  M S     +E +  + L AC GL  L+ G ++H   I    +  ++++ +A++
Sbjct: 135 ALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIH-ALISKSRYLLDVYMGSALV 193

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           DMY+KCG +  A   F  +   ++ +  +NS+I+   Q+G    ++ VF  M   G++PD
Sbjct: 194 DMYSKCGVVACAQRAFDGMA--VRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPD 251

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            +T  +V+ AC+    + EG Q    ++     +  +     +VD+ A+  R++EA  + 
Sbjct: 252 EITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVF 311

Query: 508 QSMP 511
             MP
Sbjct: 312 DRMP 315


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/693 (32%), Positives = 370/693 (53%), Gaps = 70/693 (10%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F +       +W   + G +R     + +  +  ML++G  +PN F    V+  CA
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-------- 172
            +   +SG ++H  +++ G+  D+ + NA++  Y+  G    A +VF G++A        
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF-GAMAERDAVSWN 182

Query: 173 ------------------------RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
                                   RD  S+NT+I+G  +      AL   R+M  + +  
Sbjct: 183 IAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVF 242

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           + +T+   F     L  P +G+Q H  V   +  +  +  +++++++MY KCGL+  A  
Sbjct: 243 NHYTYSTAFVLAGMLLLPDLGRQLHGRVL--IAALEGDAFVRSSLMDMYCKCGLLEAAAS 300

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL-VSWTAMISGYSQVGGFS 327
           VF           WS +                      RD+  +W+ M++GY Q G   
Sbjct: 301 VFDH---------WSPLT---------------------RDMNFAWSTMVAGYVQNGREE 330

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           +AL+LF +M   G+  D  T+ +V  AC  +G ++ G+++H   +E + +  +  L +A+
Sbjct: 331 EALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHG-CVEKLWYKLDAPLASAI 389

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           +DMYAKCG+++ A S+F +     K ++++ S++   A HG G  +I +F  M    + P
Sbjct: 390 VDMYAKCGNLEDARSIFDRACT--KNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTP 447

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGL 506
           + +T V VL ACSH GLV EG+ +F+ M   YGI P +EHY C+VDL  R G LD+A   
Sbjct: 448 NEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNF 507

Query: 507 IQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566
           I+    +  +++W+ LL+ACRLH++ +  ++A +KL+ LE      YV+LSN+ A   +W
Sbjct: 508 IEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKW 567

Query: 567 EEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA 626
            +  ++R  M +  ++K PG S+I    T+H F+A   SHPQ+ EI   L+ +  +LK  
Sbjct: 568 HDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEI 627

Query: 627 GYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAF 686
           GY   T  VV DV++E++ET + +HSEKLA+AFG+I++ S   +RI KNLR+C DCH A 
Sbjct: 628 GYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAI 687

Query: 687 KLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           K +S    REI+VRD  RFH FK  +CSC DFW
Sbjct: 688 KYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 184/391 (47%), Gaps = 7/391 (1%)

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM-QDSC 205
           R +++ F+      ++A  VF+    R    +   I+G A+       +  F +M  +  
Sbjct: 48  RASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGE 107

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
             P+AF   A+   C  + D   GK+ H  + +N   V  +++L  AV++MYAKCG    
Sbjct: 108 ATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRN--GVHLDVVLCNAVLDMYAKCGQFER 165

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           A RVF  M   +   +W+  I    + G I  + QLFD+   RD  SW  +ISG  + G 
Sbjct: 166 ARRVFGAMA-ERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGH 224

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
            + AL    +M   G+  +  T          L   D G++LH + +   + G + F+ +
Sbjct: 225 AADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEG-DAFVRS 283

Query: 386 AVIDMYAKCGSIDTALSVF-YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           +++DMY KCG ++ A SVF +  P        ++++++G  Q+G  E ++ +FR M   G
Sbjct: 284 SLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREG 343

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           +  D  T  +V  AC++ G+VE+G+Q    +     K        +VD+ A+ G L++A 
Sbjct: 344 VAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDAR 403

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
            +        N  +W ++L +   H   +I 
Sbjct: 404 SIFDR-ACTKNIAVWTSMLCSYASHGQGRIA 433



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 150/320 (46%), Gaps = 14/320 (4%)

Query: 26  QIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRIL----FSQIDNPNIFIWNTLM 80
           Q+HG+++ + L       S L+  +    CK GL  +       +S +     F W+T++
Sbjct: 265 QLHGRVLIAALEGDAFVRSSLMDMY----CKCGLLEAAASVFDHWSPLTRDMNFAWSTMV 320

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
            GY ++   +EAL L+  ML +G V+ + FT   V  +CA +   + G Q+H  + K   
Sbjct: 321 AGYVQNGREEEALDLFRRMLREG-VAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWY 379

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           + D  + +A++  Y+  G + +A  +F+ +  +++  + +++  YA   +   A+ LF +
Sbjct: 380 KLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFER 439

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M    + P+  T V + SAC+ +     G+ +   + +  G V S +     ++++Y + 
Sbjct: 440 MTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPS-IEHYNCIVDLYGRS 498

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR---QLFDQMDQRDLVSWTAMI 317
           GL++ A+       ++     W +++S        E A+   +   Q++Q D  S+  + 
Sbjct: 499 GLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLS 558

Query: 318 SGYSQVGGFSQALELFGKME 337
           + Y+    +    EL   M+
Sbjct: 559 NIYATNNKWHDTFELRVSMQ 578


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/655 (36%), Positives = 381/655 (58%), Gaps = 43/655 (6%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV---LNSCA 120
           LF  I  P+ + +NTL+   + S S  +A  L+  M  +  V+ N          L S A
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 121 R----LSSFKSGCQIHCHIIKF----------GL-----EFDLFIRNALIHFYSIFGYIN 161
           R    L+  K     +  +  +          GL     E+D+   NAL+  Y  +G ++
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMS 210

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A ++F+    RD+VS+N +++GYA+  +   A    R++ D+    D FT+ A+ S   
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAVVSGYA 266

Query: 222 E---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           +   L + R  + F A+  +N   V  N     A++  Y +  +M+ A+ +F+ M   ++
Sbjct: 267 QNGMLEEAR--RVFDAMPERN--AVSWN-----AMVAAYIQRRMMDEAKELFNMMP-CRN 316

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
            A+W++M++GY + G +E A+ +FD M Q+D VSW AM++ YSQ G   + L+LF +M  
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G   +      VL  C  + AL+ G +LH + I    +G   F+  A++ MY KCG+++
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR-AGYGVGCFVGNALLAMYFKCGNME 435

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A + F ++ +  + V  +N++I+G A+HG G+ ++ +F  M     KPD +T V VL A
Sbjct: 436 DARNAFEEMEE--RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLVE+G  +F SM  ++G+  + EHY CM+DLL R GRL EA+ L++ MP++ +S 
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W ALL A R+HRN ++G  A +K+ +LEP++   YVLLSN+ A + +W +AR++R +M+
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
           + G++K PG+S+IE    +H F A    HP+ ++I   L+D+ M++K AGYV  T  V+ 
Sbjct: 614 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 673

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
           DV+EEEKE ++ YHSEKLA+A+G++N      IR+ KNLR+CGDCH AFK   E+
Sbjct: 674 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKAWIEL 728



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 185/420 (44%), Gaps = 62/420 (14%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           LE ++   N  I  +   G + +A ++F     R   +YN ++ GY+       A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 200 KMQDSCIQPDAFTFVAMFSA---CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
            +     +PD +++  +  A    + L D R    F  +  ++   V  N++     I+ 
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADAR--GLFDEMPVRD--SVTYNVM-----ISS 140

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           +A  GL+++A   F  +   K   +W+ M++ Y R G++E AR LF+   + D++SW A+
Sbjct: 141 HANHGLVSLARHYFD-LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNAL 199

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           +SGY Q G  S+A ELF +M       D V+   ++      G +   +RL      +  
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLF-----DAA 250

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------------------------- 410
             R++F  TAV+  YA+ G ++ A  VF  +P+                           
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 411 ---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
               + V+ +N++++G AQ G+ E + AVF  M     + D V++  +L A S GG  EE
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQGGCSEE 366

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD---EAYGLIQSMPYDANSVIWRALLA 524
             Q F  M   G       + C++   A    L+   + +G +    Y     +  ALLA
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 149/420 (35%), Gaps = 112/420 (26%)

Query: 55  KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           +NG +  +R LF+     ++  WN LM GY +     EA  L+  M  + +VS N     
Sbjct: 174 RNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWN----- 228

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +++  AR        +    +       D+F   A++  Y+  G +  A +VF+    R
Sbjct: 229 IMVSGYARRGDMVEARR----LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER 284

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQ---------------------------DSCI 206
           + VS+N ++  Y Q +    A  LF  M                            D+  
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344

Query: 207 QPDAFTFVAMFSA-----------------------------------CTELNDPRIGKQ 231
           Q DA ++ AM +A                                   C ++     G Q
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 232 FHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            H  + +    +GC   N LL      MY KCG M  A   F  M   +   +W++MI+G
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLA-----MYFKCGNMEDARNAFEEM-EERDVVSWNTMIAG 458

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y R G        F +                       +ALE+F  M +    PD++T+
Sbjct: 459 YARHG--------FGK-----------------------EALEIFDMMRTTSTKPDDITL 487

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V VL AC   G ++ G         +          T +ID+  + G +  A  +   +P
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 73/342 (21%)

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---- 296
           G +   ++     I  + + G +  AER+F+ M   +ST+ +++M++GY+  G++     
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMP-RRSTSTYNAMLAGYSANGRLPLAAS 90

Query: 297 ---------------------------RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
                                       AR LFD+M  RD V++  MIS ++  G  S A
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLA 150

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACV---------GL-----------------GALDF 363
              F     L    D V+   +L A V         GL                 G + +
Sbjct: 151 RHYF----DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 206

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK    + + + + GR++     ++  YA+ G +  A  +F   P  ++ V  + +++SG
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP--VRDVFTWTAVVSG 264

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            AQ+G+ E +  VF  M     + + V++  ++ A     +++E K+ F  M    +   
Sbjct: 265 YAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVA-- 318

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +  M+   A+ G L+EA  +  +MP   ++V W A+LAA
Sbjct: 319 --SWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 58/295 (19%)

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345
           I+ + R G++  A +LF  M +R   ++ AM++GYS  G    A  LF  +      PD 
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405
            +   +L A                                     A   S+  A  +F 
Sbjct: 101 YSYNTLLHAL------------------------------------AVSSSLADARGLFD 124

Query: 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           ++P  ++    +N +IS  A HGL    +++ R    +  + D V++  +L A    G V
Sbjct: 125 EMP--VRDSVTYNVMISSHANHGL----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRV 178

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EE +  F S   + +      +  ++    + G++ EA  L   MP   + V W  +++ 
Sbjct: 179 EEARGLFNSRTEWDVI----SWNALMSGYVQWGKMSEARELFDRMP-GRDVVSWNIMVSG 233

Query: 526 CRLHRNAKIGE-IAGQKLLDLEPDHGA-HYVLLSNMLAETYRWEEARQVRKLMDD 578
                 A+ G+ +  ++L D  P      +  + +  A+    EEAR+V   M +
Sbjct: 234 Y-----ARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 108/261 (41%), Gaps = 46/261 (17%)

Query: 6   LEHSSLLALLESCK---SLKQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFR 60
           +  S+   +L +C    +L+  +Q+HG+++ +G  +   + ++ L  +F    C N +  
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFK---CGN-MED 436

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R  F +++  ++  WNT++ GY+R    +EAL ++  M+      P++ T   VL +C+
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACS 495

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                + G         + +  D  +     H+  +   +  A ++ E   A DL     
Sbjct: 496 HSGLVEKGISYF-----YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE---AHDL----- 542

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
                               M+D   +PD+  + A+  A     +P +G+     +++  
Sbjct: 543 --------------------MKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE-- 580

Query: 241 GCVGSNMLLKTAVINMYAKCG 261
                N  +   + N+YA  G
Sbjct: 581 -LEPENAGMYVLLSNIYASSG 600


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/615 (36%), Positives = 361/615 (58%), Gaps = 51/615 (8%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +   + +C    +   G Q+H  +I       +F+   L+  Y   G +++A  V +   
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R +VS+ T+I+GY+Q +    AL LF KM  +   P+ +T   + ++C+       GKQ
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H+++ K      S+M + +++++MYAK                                
Sbjct: 133 VHSLLVKT--NFESHMFVGSSLLDMYAK-------------------------------- 158

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
              I+ AR++FD + +RD+VS TA+ISGY+Q G   +AL+LF ++ S G+  + VT   +
Sbjct: 159 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 218

Query: 352 LRACVGLGALDFGKRLHQQYI--ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           + A  GL +LD+GK++H   +  E   F   + L  ++IDMY+KCG +  +  VF  + +
Sbjct: 219 VTALSGLASLDYGKQVHALILRKELPFF---VALQNSLIDMYSKCGKLLYSRRVFDNMLE 275

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             ++V  +N+++ G  +HGLG   I++F+++    +KPD VT + VL  CSHGGLV+EG 
Sbjct: 276 --RSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGL 332

Query: 470 QFFESMLNYGIKPQME-----HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
             F+++    +K Q       HYGC++DLL R GRL++A  LI++MP+++   IW +LL 
Sbjct: 333 DIFDTV----VKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLG 388

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           ACR+H N  +GE+  QKLL++EP++  +YV+LSN+ A    W++  +VRKLM +  + K 
Sbjct: 389 ACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKE 448

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           PG S+I  +  +H F +S++ HP  K+I   +K++ + +K+AG+VP+   V+ DVD+E+K
Sbjct: 449 PGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQK 508

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           E ++  HSEKLA+ FGL+N+    TIR+ KNLRIC DCH   K +S++Y REI +RD  R
Sbjct: 509 ERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNR 568

Query: 705 FHLFKKGNCSCMDFW 719
           FHL   GNC+C D+W
Sbjct: 569 FHLLTHGNCTCGDYW 583



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 168/319 (52%), Gaps = 11/319 (3%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           ++L +  Q+H +++ +     +   ++L++ +   G    L  +R +  ++   ++  W 
Sbjct: 24  RALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG---ALDDARNVLDRMPERSVVSWT 80

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           T++ GYS+++   EAL L+  ML  G + PN +T   VL SC+   S   G Q+H  ++K
Sbjct: 81  TMISGYSQTERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVK 139

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              E  +F+ ++L+  Y+    I  A +VF+    RD+VS   +I+GYAQ      AL L
Sbjct: 140 TNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDL 199

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           FR++    +Q +  TF  + +A + L     GKQ HA++ +    +   + L+ ++I+MY
Sbjct: 200 FRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE--LPFFVALQNSLIDMY 257

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR---DLVSWT 314
           +KCG +  + RVF  M + +S  +W++M+ GY R G       LF  + +    D V+  
Sbjct: 258 SKCGKLLYSRRVFDNM-LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLL 316

Query: 315 AMISGYSQVGGFSQALELF 333
           A++SG S  G   + L++F
Sbjct: 317 AVLSGCSHGGLVDEGLDIF 335


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/615 (36%), Positives = 361/615 (58%), Gaps = 51/615 (8%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +   + +C    +   G Q+H  +I       +F+   L+  Y   G +++A  V +   
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R +VS+ T+I+GY+Q +    AL LF KM  +   P+ +T   + ++C+       GKQ
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H+++ K      S+M + +++++MYAK                                
Sbjct: 165 VHSLLVKT--NFESHMFVGSSLLDMYAK-------------------------------- 190

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
              I+ AR++FD + +RD+VS TA+ISGY+Q G   +AL+LF ++ S G+  + VT   +
Sbjct: 191 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 250

Query: 352 LRACVGLGALDFGKRLHQQYI--ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           + A  GL +LD+GK++H   +  E   F   + L  ++IDMY+KCG +  +  VF  + +
Sbjct: 251 VTALSGLASLDYGKQVHALILRKELPFF---VALQNSLIDMYSKCGKLLYSRRVFDNMLE 307

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             ++V  +N+++ G  +HGLG   I++F+++    +KPD VT + VL  CSHGGLV+EG 
Sbjct: 308 --RSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGL 364

Query: 470 QFFESMLNYGIKPQME-----HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
             F+++    +K Q       HYGC++DLL R GRL++A  LI++MP+++   IW +LL 
Sbjct: 365 DIFDTV----VKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLG 420

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           ACR+H N  +GE+  QKLL++EP++  +YV+LSN+ A    W++  +VRKLM +  + K 
Sbjct: 421 ACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKE 480

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           PG S+I  +  +H F +S++ HP  K+I   +K++ + +K+AG+VP+   V+ DVD+E+K
Sbjct: 481 PGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQK 540

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           E ++  HSEKLA+ FGL+N+    TIR+ KNLRIC DCH   K +S++Y REI +RD  R
Sbjct: 541 ERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNR 600

Query: 705 FHLFKKGNCSCMDFW 719
           FHL   GNC+C D+W
Sbjct: 601 FHLLTHGNCTCGDYW 615



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 168/319 (52%), Gaps = 11/319 (3%)

Query: 19  KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           ++L +  Q+H +++ +     +   ++L++ +   G    L  +R +  ++   ++  W 
Sbjct: 56  RALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG---ALDDARNVLDRMPERSVVSWT 112

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           T++ GYS+++   EAL L+  ML  G + PN +T   VL SC+   S   G Q+H  ++K
Sbjct: 113 TMISGYSQTERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVK 171

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              E  +F+ ++L+  Y+    I  A +VF+    RD+VS   +I+GYAQ      AL L
Sbjct: 172 TNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDL 231

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           FR++    +Q +  TF  + +A + L     GKQ HA++ +    +   + L+ ++I+MY
Sbjct: 232 FRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE--LPFFVALQNSLIDMY 289

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR---DLVSWT 314
           +KCG +  + RVF  M + +S  +W++M+ GY R G       LF  + +    D V+  
Sbjct: 290 SKCGKLLYSRRVFDNM-LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLL 348

Query: 315 AMISGYSQVGGFSQALELF 333
           A++SG S  G   + L++F
Sbjct: 349 AVLSGCSHGGLVDEGLDIF 367


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 321/554 (57%), Gaps = 41/554 (7%)

Query: 170 SLARDLVSYNTLINGYAQVKEPCP---ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226
           S+  D    NTLI  +A    P     A   F  M  S   P+ FTF  +  AC     P
Sbjct: 103 SVPIDAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAF--P 160

Query: 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            +G Q HA   K  G   ++  +   +I+MY+  G   + +                   
Sbjct: 161 GVGVQAHAAALK-FGFT-TDQYVSNTLIHMYSCFGGEFLGD------------------- 199

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
                      AR +FD+M +   V+W+AMI GY + G  S A+ LF +M++ G+ PDEV
Sbjct: 200 -----------ARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEV 248

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           TM+ VL A           R   +++E    G+++ L  A+ID  AKCG +D A++VF  
Sbjct: 249 TMIGVLAA-AADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQG 307

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           + +  +T+  + S+I  LA  G G+ ++AVF EM+  G++PD V F+ VL ACSH G+V+
Sbjct: 308 MKE--RTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVD 365

Query: 467 EGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG  +FESM + YGI P++EHYGCMVD+  R G ++ A   +  MP   N +IWR L+AA
Sbjct: 366 EGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAA 425

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR H   ++GE   + LL+  P H A+YV+LSN+ A T RW+E  ++R+ M   GI+K P
Sbjct: 426 CRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVP 485

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S +E +G +H F+A  +SHPQ KEI +M+++M  +L+ AG++  T +V+ D+DEE+KE
Sbjct: 486 GCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKE 545

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             + +HSEKLA+AF L+ +     +R+ KNLR+C DCH A K +S +Y REI+VRD  RF
Sbjct: 546 VALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRF 605

Query: 706 HLFKKGNCSCMDFW 719
           H FK G+CSC DFW
Sbjct: 606 HRFKNGSCSCNDFW 619



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 172/368 (46%), Gaps = 44/368 (11%)

Query: 72  NIFIWNTLMRGYSRSDSPQEAL--VLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           + F+ NTL+R ++ S  P   L    +  ++ +    PN FTFPF+L +CA       G 
Sbjct: 107 DAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPGV--GV 164

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFG--YINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           Q H   +KFG   D ++ N LIH YS FG  ++ +A  VF+       V+++ +I GY +
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LFR+MQ S ++PD  T + + +A  +L    + +     V K    +G ++
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKE--GIGKSV 282

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            L  A+I+  AKCG ++ A  VF  M   ++  +W+S+I     EG+ +           
Sbjct: 283 TLCNALIDALAKCGDLDGAMAVFQGM-KERTIVSWTSVIDALAMEGRGK----------- 330

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                               +A+ +F +M++ G+ PD+V  + VL AC   G +D G   
Sbjct: 331 --------------------EAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGY 370

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
            +           I     ++DM+ + G ++ A+   +K+P     + ++ ++++    H
Sbjct: 371 FESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPI-IWRTLVAACRAH 429

Query: 428 G---LGET 432
           G   LGET
Sbjct: 430 GRLELGET 437



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 131/287 (45%), Gaps = 9/287 (3%)

Query: 14  LLESCKSLKQ-ALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLF--RSRILFSQID 69
           LL++C +     +Q H   +  G       S+ LI  ++   C  G F   +R +F ++ 
Sbjct: 152 LLKACAAFPGVGVQAHAAALKFGFTTDQYVSNTLIHMYS---CFGGEFLGDARNVFDRMA 208

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
             +   W+ ++ GY RS    +A+ L+  M + G V P+  T   VL + A L + +   
Sbjct: 209 KSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASG-VRPDEVTMIGVLAAAADLGALELAR 267

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
            +   + K G+   + + NALI   +  G ++ A  VF+G   R +VS+ ++I+  A   
Sbjct: 268 WVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEG 327

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ +F +M+ + ++PD   F+ + +AC+       G  +   +    G +   +  
Sbjct: 328 RGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYG-IDPKIEH 386

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
              +++M+ + G++  A      M M  +   W ++++     G++E
Sbjct: 387 YGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLE 433


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/656 (37%), Positives = 359/656 (54%), Gaps = 45/656 (6%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP--FVLNSCARLSSFKS 127
           NP +  +   + G ++   P  AL  + +ML  G+  PN+FTFP  F   +CA       
Sbjct: 73  NPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGL-RPNDFTFPSAFKAAACAPPRCSTV 131

Query: 128 GCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           G QIH   ++FG L  D F+  A +  Y   G +  A ++FE    R+++++N ++    
Sbjct: 132 GPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAV 191

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
               P      +  ++++   P+  +  A F+AC       +G+QFH  V          
Sbjct: 192 IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFV---------- 241

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
                        CG           M +S S A    M+  Y +     +AR +FD M 
Sbjct: 242 -----------VTCGF---------DMDVSVSNA----MVDFYGKCRCAGKARAVFDGMR 277

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            R+ VSW +MI  Y+Q G    AL ++    + G  P +  + +VL  C GL  L+FG+ 
Sbjct: 278 VRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRA 337

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNSIISGLA 425
           LH   + + +   NIF+ +A++DMY KCG ++ A  VF  +P +NL T   +N++I G A
Sbjct: 338 LHAVAVRSCI-DANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVT---WNAMIGGYA 393

Query: 426 QHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
             G  + ++AVF  M    G  P+ +T V V+ ACS GGL ++G + F++M   +G++P+
Sbjct: 394 HIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPR 453

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            EHY C+VDLL R G  + AY +IQ MP   +  +W ALL AC++H   ++G IA +KL 
Sbjct: 454 TEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLF 513

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L+P    ++VLLSNMLA   RW EA  VRK M + GI+K PG S+I     +H F A  
Sbjct: 514 ELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKD 573

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
             H +  EI+ +L  +  +++++GY+P+T   ++DV+EEEKET V  HSEKLALAFGLI+
Sbjct: 574 TKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIH 633

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                 IRITKNLRIC DCH AFK +S I  REI+VRD  RFH FK+  CSC D+W
Sbjct: 634 IPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 194/462 (41%), Gaps = 45/462 (9%)

Query: 26  QIHGQIVHSGL---NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRG 82
           QIH   +  G    +  +S + +  +F  +GC   L  +R LF ++ N N+  WN +M  
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFK-TGC---LGLARRLFEEMPNRNVIAWNAVMTN 189

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
                 P E    Y  +   G + PN  +     N+CA       G Q H  ++  G + 
Sbjct: 190 AVIDGRPLETFKAYFGLREAGGM-PNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDM 248

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D+ + NA++ FY        A  VF+G   R+ VS+ ++I  YAQ      AL ++   +
Sbjct: 249 DVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGAR 308

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           ++  +P  F   ++ + C  L     G+  HAV  ++  C+ +N+ + +A+++MY KCG 
Sbjct: 309 NTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRS--CIDANIFVASALVDMYGKCGG 366

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  AE+VF  M   ++   W++MI GY   G  + A  +FD M                 
Sbjct: 367 VEDAEQVFLDMP-ERNLVTWNAMIGGYAHIGDAQNALAVFDAM----------------- 408

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
                        + S G  P+ +T+V V+ AC   G    G  L     E         
Sbjct: 409 -------------IRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTE 455

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
               V+D+  + G  + A  +  ++P    ++S++ +++     H  G+T +      +L
Sbjct: 456 HYACVVDLLGRAGMEERAYEIIQRMPMR-PSISVWGALLGACKMH--GKTELGRIASEKL 512

Query: 443 MGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
             L P D    V +    +  G   E     + M N GIK +
Sbjct: 513 FELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKE 554



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 160/381 (41%), Gaps = 39/381 (10%)

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
           FI   L++ YS       A           +VS+   I+G AQ   P  AL  F  M   
Sbjct: 46  FICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRV 105

Query: 205 CIQPDAFTFVAMF--SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
            ++P+ FTF + F  +AC       +G Q HA+  +  G +  +  +  A ++MY K G 
Sbjct: 106 GLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALR-FGYLPGDPFVSCAAMDMYFKTGC 164

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           + +A R+F                                ++M  R++++W A+++    
Sbjct: 165 LGLARRLF--------------------------------EEMPNRNVIAWNAVMTNAVI 192

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G   +  + +  +   G  P+ V++ A   AC G   L  G++ H  ++    F  ++ 
Sbjct: 193 DGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFH-GFVVTCGFDMDVS 251

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           ++ A++D Y KC     A +VF  +   ++    + S+I   AQHG  E ++AV+     
Sbjct: 252 VSNAMVDFYGKCRCAGKARAVFDGM--RVRNSVSWCSMIVAYAQHGAEEDALAVYMGARN 309

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            G +P      +VL  C+    +  G+      +   I   +     +VD+  + G +++
Sbjct: 310 TGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVED 369

Query: 503 AYGLIQSMPYDANSVIWRALL 523
           A  +   MP + N V W A++
Sbjct: 370 AEQVFLDMP-ERNLVTWNAMI 389



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           D   + A   A +   +   G+  H + +  +  G   F+   ++++Y+K      A S 
Sbjct: 8   DPQLLGAAFEAAISSRSPRLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASA 67

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL--CACSH 461
               P    TV  F + ISG AQH     +++ F  M  +GL+P+  TF +     AC+ 
Sbjct: 68  LASDPN--PTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAP 125

Query: 462 GGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWR 520
                 G Q     L +G  P      C  +D+  + G L  A  L + MP + N + W 
Sbjct: 126 PRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMP-NRNVIAWN 184

Query: 521 ALL 523
           A++
Sbjct: 185 AVM 187


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/525 (40%), Positives = 325/525 (61%), Gaps = 42/525 (8%)

Query: 197 LFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
           L+R+M       P++FT   +  ACT L +   G+Q HA  + +   +  +  ++T ++N
Sbjct: 116 LYRRMLHAGSPAPNSFTLAFVLKACTALGE---GQQLHAQAFGH--GLEPSPYVQTGLLN 170

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-DQRDLVSWT 314
           +YA+C                                 ++  AR +FD M + ++LV+W+
Sbjct: 171 LYARCE--------------------------------EVALARNVFDGMVEDKNLVAWS 198

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           +MI GYS++G  ++AL LF  M+++G++PDEVTMV+V+ AC   GALD GK +H  +I+ 
Sbjct: 199 SMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHA-FIDR 257

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
                ++ L+TA+IDMYAKCG I+ A SVF  + +  +    ++++I GLA HGL E ++
Sbjct: 258 KGITVDLELSTALIDMYAKCGLIERAKSVFDSMVE--RDTKAWSAMIVGLAMHGLAEDAL 315

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
            +F  M  + ++P+ VTFV VL AC+H GLV++G++++ +M   GI+  ME+YGCMVDLL
Sbjct: 316 GLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDLL 375

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G LDEA+  +  MP   NSVIWR LL A +      I E+A ++L +LEP +  +YV
Sbjct: 376 CRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQNPENYV 435

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LLSN+ A   +W+  R +RK M D+ +    G S IE NG LH+F+ S  SHP+ K+I L
Sbjct: 436 LLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEIKKIRL 495

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
           +L+++  ++  AG+ P T  V+ DV EEEKE  +  HSE+LA+A+GL+ +++   IR+ K
Sbjct: 496 VLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVK 555

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR C DCH   K++S+ Y REI+VRD +RFH F  G+CSC DFW
Sbjct: 556 NLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 196/404 (48%), Gaps = 44/404 (10%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDS-----PQEALVLYTSMLSKGIVSPNNFTFPFV 115
           +R LF QI  P  F +N+L+R  S S S       +  +LY  ML  G  +PN+FT  FV
Sbjct: 77  ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFV 136

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RD 174
           L +C   ++   G Q+H      GLE   +++  L++ Y+    +  A  VF+G +  ++
Sbjct: 137 LKAC---TALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKN 193

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           LV+++++I GY+++     AL LFR MQ   + PD  T V++ SAC +     +GK  HA
Sbjct: 194 LVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHA 253

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            + +    +  ++ L TA+I+MYAKCGL+  A+ VF +M + + T AWS+MI G    G 
Sbjct: 254 FIDRK--GITVDLELSTALIDMYAKCGLIERAKSVFDSM-VERDTKAWSAMIVGLAMHGL 310

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            E                                AL LF +M  L + P+ VT V VL A
Sbjct: 311 AE-------------------------------DALGLFSRMLQLKVRPNNVTFVGVLSA 339

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C   G +D G+R +   ++ +    ++     ++D+  + G +D A S    +P +  +V
Sbjct: 340 CAHSGLVDDGRR-YWCTMQELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSV 398

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
              N +++  + + +    +A  R  EL    P+    ++ L A
Sbjct: 399 IWRNLLVASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYA 442



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 150/303 (49%), Gaps = 10/303 (3%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +L  +L++C +L +  Q+H Q    GL       + L++ +A   C+       +    +
Sbjct: 132 TLAFVLKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYA--RCEEVALARNVFDGMV 189

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
           ++ N+  W++++ GYSR     EAL L+  M + G V+P+  T   V+++CA+  +   G
Sbjct: 190 EDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVG-VNPDEVTMVSVISACAKAGALDLG 248

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +H  I + G+  DL +  ALI  Y+  G I  A  VF+  + RD  +++ +I G A  
Sbjct: 249 KWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMH 308

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                AL LF +M    ++P+  TFV + SAC        G+++   + + LG + ++M 
Sbjct: 309 GLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTM-QELG-IEASME 366

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQ 304
               ++++  + GL++ A    + M +S ++  W +++       +I+     +R+LF+ 
Sbjct: 367 NYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFEL 426

Query: 305 MDQ 307
             Q
Sbjct: 427 EPQ 429


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/700 (33%), Positives = 380/700 (54%), Gaps = 44/700 (6%)

Query: 20   SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
            +LK    IHG +V  GL+ ++   + L++ ++ +G       + ++F  +   ++  WN+
Sbjct: 413  NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSE---DAELVFQAMTERDLISWNS 469

Query: 79   LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
            +M  Y +     + L +   +L  G V  N+ TF   L +C+          +H  II  
Sbjct: 470  MMACYVQDGKCLDGLKILAELLQMGKVM-NHVTFASALAACSNPECLIESKIVHALIIVA 528

Query: 139  GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
            G    L + NAL+  Y   G +  A KV +     D V++N LI G+A+ +EP  A+  +
Sbjct: 529  GFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY 588

Query: 199  RKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
            + +++  I  +  T V++  AC+  +D  + G   HA +   L    S+  +K ++I MY
Sbjct: 589  KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIV--LTGFESDDYVKNSLITMY 646

Query: 258  AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            AKCG +N                                 +  +FD +  +  ++W AM+
Sbjct: 647  AKCGDLN--------------------------------SSNYIFDGLGNKSPITWNAMV 674

Query: 318  SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            +  +  G   +AL++FG+M ++G++ D+ +    L A   L  L+ G++LH   I+ + F
Sbjct: 675  AANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIK-LGF 733

Query: 378  GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
              ++ +T A +DMY KCG +   L +  + P N   +S +N +IS  A+HG  + +   F
Sbjct: 734  ESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLS-WNILISAFARHGCFQKARETF 791

Query: 438  REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLAR 496
             EM  +G KPD VTFV++L AC+HGGLV+EG  +++SM   +G+ P +EH  C++DLL R
Sbjct: 792  HEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGR 851

Query: 497  DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
             GRL  A G I+ MP   N + WR+LLAACR+H N ++     + LL+L+P   + YVL 
Sbjct: 852  SGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLY 911

Query: 557  SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
            SN+ A + +WE+   +RK M  + I+K P  S+++    +H F   +K HPQ   I   L
Sbjct: 912  SNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKL 971

Query: 617  KDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNL 676
             ++    K AGYVP+T   + D+DEE+KE  +  HSE+LALAFGLIN+    T+RI KNL
Sbjct: 972  GELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNL 1031

Query: 677  RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCM 716
            R+CGDCH  +K +S I  R+I++RD  RFH F  G CSC+
Sbjct: 1032 RVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCV 1071



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 219/468 (46%), Gaps = 44/468 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R +F ++ + N   W+T++ GY R    +EA+ L+  M   G V PN F    ++ +C+
Sbjct: 148 ARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG-VEPNGFMVASLITACS 206

Query: 121 RLSSF-KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           R       G Q+H  ++K G+  D+++  AL+HFY   G + NA K+FE     ++VS+ 
Sbjct: 207 RSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWT 266

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF--HAVVY 237
           +L+ GY+    P   L ++++M+   +  +  TF  + S+C  L D  +G Q   H + Y
Sbjct: 267 SLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQY 326

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
                                               G   S +  +S+IS ++    +E 
Sbjct: 327 ------------------------------------GFEDSVSVANSLISMFSSFSSVEE 350

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A  +FD M++ D++SW AMIS Y+  G   ++L  F  M  L    +  T+ ++L  C  
Sbjct: 351 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSS 410

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           +  L +G+ +H   ++ +    N+ +   ++ +Y++ G  + A  VF  + +  + +  +
Sbjct: 411 VDNLKWGRGIHGLVVK-LGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTE--RDLISW 467

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           NS+++   Q G     + +  E+  MG   + VTF + L ACS+   + E K     ++ 
Sbjct: 468 NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIV 527

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            G    +     +V +  + G + EA  ++Q+MP   + V W AL+  
Sbjct: 528 AGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 574



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 203/462 (43%), Gaps = 47/462 (10%)

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           Q+ + ++   N   R +   D     + L       GI   N   FP  L   + ++S  
Sbjct: 54  QVKDDDLKTSNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFP--LKGFSEITSQM 111

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +G  +H   I   +   +F  N LI+ YS FG I +A  VF+    R+  S++T+++GY 
Sbjct: 112 AGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYV 171

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCV 243
           +V     A+ LF +M    ++P+ F   ++ +AC+    + D   G Q H  V K  G +
Sbjct: 172 RVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQVHGFVVKT-GIL 228

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G ++ + TA+++ Y   GL+  A+++F  M    +  +W+S++ GY+  G       ++ 
Sbjct: 229 G-DVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSWTSLMVGYSDSGNPGEVLNVYQ 286

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALD 362
           +M Q                 G S     F  +  S G+  D+V    VL   +  G   
Sbjct: 287 RMRQE----------------GVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYG--- 327

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
                         F  ++ +  ++I M++   S++ A  VF  +  N   +  +N++IS
Sbjct: 328 --------------FEDSVSVANSLISMFSSFSSVEEACYVFDHM--NECDIISWNAMIS 371

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
             A HGL   S+  F  M  +  + +  T  ++L  CS    ++ G+     ++  G+  
Sbjct: 372 AYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDS 431

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
            +     ++ L +  GR ++A  + Q+M  + + + W +++A
Sbjct: 432 NVCICNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMMA 472


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 368/625 (58%), Gaps = 27/625 (4%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGL--EFDLFIRNALIHFYSIFGYINNAHKVFE- 168
           F  +L  C+R ++ + G Q+H   I  GL    + F+RNAL+H Y      ++A K+F+ 
Sbjct: 23  FRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDE 82

Query: 169 -GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN--D 225
                +D V Y  LI        P  +L LF +M+   +  D    V   +AC  L   D
Sbjct: 83  IPQSHKDSVDYTALIRHCP----PFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGD 138

Query: 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSM 285
            ++G Q H  V K  G V  + +   A++N+Y K GL+  A ++F  + + +S  +WS  
Sbjct: 139 TKVGSQMHVGVVK-FGFVKFDKVC-NALMNVYVKFGLVGEARKMFEGIEV-RSVVSWSCF 195

Query: 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPD 344
           + G  +   +E  R LFD+M +R+ V+WT MI GY   G   +A  L  +M    G    
Sbjct: 196 LEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLS 255

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
            VT+ +VL AC   G +  G+ +H   ++ +     + + T+++DMYAKCG I+ ALSVF
Sbjct: 256 FVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVF 315

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             + K  + V  +N+++ GLA HG+G+ ++ +F  M +  +KPDGVTF+ +L ACSH GL
Sbjct: 316 RSMLK--RNVVAWNAMLGGLAMHGMGKIAVDMFPSM-VEEVKPDGVTFMALLSACSHSGL 372

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           VE+G  +F  +   Y IKP++EHY CMV LL R GRL+EA  ++++M    N V+  +L+
Sbjct: 373 VEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLI 432

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            +C  H   ++GE   + LL+++P +  ++++LSNM A + + E+A  +R+++   GI+K
Sbjct: 433 GSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKK 492

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT-VQVVF----- 637
            PG S I  +G LH+F+A  KSH +T EI + L +M  +L+SAGYVPNT  QV+F     
Sbjct: 493 VPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNR 552

Query: 638 -DVDE--EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
            D  E  EE E V+  HSEKLAL FGL+++ S   + I KNLRIC DCH A K+ S++Y+
Sbjct: 553 DDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYK 612

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REI+VRD  RFH FK G+CSC D+W
Sbjct: 613 REIVVRDRYRFHSFKHGSCSCSDYW 637



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 211/498 (42%), Gaps = 102/498 (20%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGL----NHHISSSQLISFFALSGCKNGLFRS 61
           L   SLL       +L+   Q+H   + +GL    NH + ++ L     L G  +    +
Sbjct: 21  LHFRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALL----HLYGSCSLPSHA 76

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF------- 114
           R LF +I  P     +       R   P E+L L+  M          F  P        
Sbjct: 77  RKLFDEI--PQSHKDSVDYTALIRHCPPFESLKLFIQM--------RQFDLPLDGVVMVC 126

Query: 115 VLNSCARL--SSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
            LN+CARL     K G Q+H  ++KFG ++FD  + NAL++ Y  FG +  A K+FEG  
Sbjct: 127 ALNACARLGGGDTKVGSQMHVGVVKFGFVKFDK-VCNALMNVYVKFGLVGEARKMFEGIE 185

Query: 172 ARDLVSYNTLING-------------YAQVKEPCPALW------------------LFRK 200
            R +VS++  + G             + ++ E     W                  L ++
Sbjct: 186 VRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKE 245

Query: 201 MQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           M   C  +    T  ++ SAC++  D  +G+  H    K +G +   +++ T++++MYAK
Sbjct: 246 MVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMG-LDFGVMVGTSLVDMYAK 304

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR---DLVSWTAM 316
           CG +N A  VF +M + ++  AW++M+ G    G  + A  +F  M +    D V++ A+
Sbjct: 305 CGRINAALSVFRSM-LKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEEVKPDGVTFMAL 363

Query: 317 ISGYSQVGGFSQALELF--------------------------GKME-------SLGIHP 343
           +S  S  G   +  + F                          G++E       ++ I P
Sbjct: 364 LSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPP 423

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           +EV + +++ +C   G L  G+++ +  +E         +  +  +MYA  G ++ A S+
Sbjct: 424 NEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLS--NMYALSGKVEKANSL 481

Query: 404 FYKIPK-NLKTVSLFNSI 420
              + K  +K V   +SI
Sbjct: 482 RQVLKKRGIKKVPGMSSI 499


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/729 (32%), Positives = 399/729 (54%), Gaps = 61/729 (8%)

Query: 10  SLLALLESCKSLKQAL----QIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           +L+++  +C +L   L    Q+H  ++ +G     +++ L++ +A  G    ++ ++ LF
Sbjct: 188 TLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLG---RVYEAKTLF 244

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
              D+ ++  WNT++   S++D  +EAL+    ML  G V PN  T   VL +C+ L   
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSG-VRPNGVTLASVLPACSHLEML 303

Query: 126 KSGCQIHCHII-KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
             G +IH  ++    L  + F+  AL+  Y           VF+G   R +  +N +I G
Sbjct: 304 GCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 185 YAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           Y + +    A+ LF +M  +  + P++ T  ++  AC         +  H+ V K     
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVK--WGF 421

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             +  ++ A+++MY++ G + +A  +F +M   K   +W++MI+GY   G+ + A  L  
Sbjct: 422 EKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTMITGYVVCGRHDDALNLLH 480

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKME---SLGIHPDEVTMVAVLRACVGLGA 360
            M                Q G     +  F   E   +  + P+ VT++ VL  C  L A
Sbjct: 481 DM----------------QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAA 524

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L  GK +H  Y    +  +++ + +A++DMYAKCG ++ + +VF ++  +++ V  +N +
Sbjct: 525 LGKGKEIH-AYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQM--SVRNVITWNVL 581

Query: 421 ISGLAQHGLGETSIAVFREMELMG-----LKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
           I     HG GE ++ +FR M   G     ++P+ VT++ +  + SH G+V+EG   F +M
Sbjct: 582 IMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTM 641

Query: 476 -LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV-IWRALLAACRLHRNAK 533
              +GI+P  +HY C+VDLL R G+++EAY LI++MP +   V  W +LL AC++H+N +
Sbjct: 642 KAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLE 701

Query: 534 IGEIAGQKLLDLEP---DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           IGEIA + L  L+P   D+G    +L                 + M + G++K PG S+I
Sbjct: 702 IGEIAAKNLFVLDPNVLDYGTKQSMLG----------------RKMKEKGVRKEPGCSWI 745

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           EH   +H+FLA   SHPQ+KE+   L+ +++++K  GYVP+T  V+ +V EEEKET++  
Sbjct: 746 EHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCG 805

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSE+LA+AFGL+N+    TIR+ KNLR+C DCH+A K +S+I  REI++RD  RFH F+ 
Sbjct: 806 HSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRN 865

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 866 GTCSCGDYW 874



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 220/463 (47%), Gaps = 45/463 (9%)

Query: 76  WNTLMRGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
           W + +R  ++S S   +A+  YT+M++ G V P+NF FP VL + A +     G Q+H H
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAG-VPPDNFAFPAVLKATAGIQDLNLGKQLHAH 110

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           + KFG      + N+L++ Y   G I+ A +VF+    RD VS+N++IN   + +E   A
Sbjct: 111 VFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELA 170

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTEL-NDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           + LFR M    + P +FT V++  AC+ L N   +GKQ HA V +N            A+
Sbjct: 171 VHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDW---RTFTNNAL 227

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           + MYAK G +  A+ +F      K   +W++                             
Sbjct: 228 VTMYAKLGRVYEAKTLFDVFD-DKDLVSWNT----------------------------- 257

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
             +IS  SQ   F +AL     M   G+ P+ VT+ +VL AC  L  L  GK +H   + 
Sbjct: 258 --IISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLM 315

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           N     N F+  A++DMY  C   +    VF  + +  +T++++N++I+G  ++     +
Sbjct: 316 NNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFR--RTIAVWNAMIAGYVRNEFDYEA 373

Query: 434 IAVFREMEL-MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           I +F EM   +GL P+ VT  +VL AC       + +     ++ +G +        ++D
Sbjct: 374 IELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMD 433

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAA---CRLHRNA 532
           + +R GR++ A  +  SM    + V W  ++     C  H +A
Sbjct: 434 MYSRMGRIEIARSIFGSM-NRKDIVSWNTMITGYVVCGRHDDA 475


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/470 (45%), Positives = 305/470 (64%), Gaps = 5/470 (1%)

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310
           TA+I+ +A  G +  A+++F TM   KS  + ++M++ Y + G+++ AR LFD M++RD 
Sbjct: 97  TAIIHGHALRGDVVSAQQLFDTMP-EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG 155

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           V W  MI GY+Q G  ++AL LF +M      P+EVT+++VL AC  LGAL+ G+ +H  
Sbjct: 156 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS- 214

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           YIEN     N+ + TA++DMY+KCGS++ A  VF KI    K V  +NS+I G A HG  
Sbjct: 215 YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD--KDVVAWNSMIVGYAMHGFS 272

Query: 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGC 489
           + ++ +F+ M  MGL P  +TF+ +L AC H G V EG   F  M + YGI+P++EHYGC
Sbjct: 273 QEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGC 332

Query: 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549
           MV+LL R G +++AY L+++M  + + V+W  LL ACRLH    +GE   + L+D    +
Sbjct: 333 MVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 392

Query: 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQT 609
              Y+LLSN+ A    W+   ++R +M DSG++K PG S IE N  +H FLA   +HP+ 
Sbjct: 393 SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKR 452

Query: 610 KEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKET 669
           KEI +ML+++   LKS GY P T  V+ D+ E EKE  +  HSEKLA+AFGLIN++   T
Sbjct: 453 KEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTT 512

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I+I KNLR+C DCH   KL+S+I  R+I+VRD  RFH F  G+CSC D+W
Sbjct: 513 IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 195/468 (41%), Gaps = 114/468 (24%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L  L++  K++   LQIH  +   GL+HH I + +L   +A  G    L  S  LF +  
Sbjct: 33  LAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLG---RLDYSVALFGRTQ 89

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           NP++F W  ++ G++       A  L+ +M  K +VS                       
Sbjct: 90  NPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVS----------------------- 126

Query: 130 QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
                              A++  Y+  G ++ A  +F+G   RD V +N +I+GY Q  
Sbjct: 127 -----------------LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 169

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
            P  AL LFR+M  +  +P+  T +++ SAC +L     G+  H+ +  N   +  N+ +
Sbjct: 170 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN--GIQFNVHV 227

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
            TA+++MY+KCG +  A  VF  +   K   AW+SMI GY                    
Sbjct: 228 GTALVDMYSKCGSLEDARLVFDKID-DKDVVAWNSMIVGYA------------------- 267

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                  + G+SQ     +AL+LF  M  +G+HP  +T + +L AC   G +  G  +  
Sbjct: 268 -------MHGFSQ-----EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 315

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
           +  +       I     ++++  + G ++ A    Y++ KN                   
Sbjct: 316 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA----YELVKN------------------- 352

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
                        M ++PD V + T+L AC   G +  G++  E +++
Sbjct: 353 -------------MNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 387



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 147/308 (47%), Gaps = 8/308 (2%)

Query: 40  ISSSQLISFFALSGC--KNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           +    L+S  A+  C  K+G L  +R+LF  ++  +   WN ++ GY+++  P EALVL+
Sbjct: 119 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 178

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             ML K    PN  T   VL++C +L + +SG  +H +I   G++F++ +  AL+  YS 
Sbjct: 179 RRML-KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 237

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VF+    +D+V++N++I GYA       AL LF+ M    + P   TF+ +
Sbjct: 238 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGI 297

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            SAC        G      +    G +   +     ++N+  + G +  A  +   M + 
Sbjct: 298 LSACGHSGWVTEGWDIFNKMKDEYG-IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE 356

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV---SWTAMISGYSQVGGFSQALELF 333
                W +++      GKI    ++ + +  ++L    ++  + + Y+ VG +     L 
Sbjct: 357 PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLR 416

Query: 334 GKMESLGI 341
             M+  G+
Sbjct: 417 TMMKDSGV 424


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/592 (37%), Positives = 350/592 (59%), Gaps = 9/592 (1%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H  I+K GL        AL+  Y+    + +A  +F+ +  RD+  Y++L+   +    
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 84

Query: 191 PCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           P  AL + R M  +  + PD F   ++ S    L   R+G+Q HA  +  +     + ++
Sbjct: 85  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHA--HFVVSPYNGDDVV 142

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           K+++++MY KCG  +   +VF +M  +K++  W++++SGY   G+ E A QLF  M  R+
Sbjct: 143 KSSLVDMYCKCGSPDDGRKVFDSMS-AKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 201

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA-VLRACVGLGALDFGKRLH 368
           L +WTA+ISG    G    A+ELF +M   G+  D+  +++ V+     L A   G++LH
Sbjct: 202 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 261

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +  + F  N+ +  A+IDMY+KC  I +A  VF  I    + V  + +++ G AQHG
Sbjct: 262 GSTM-RLGFLSNMIVGNALIDMYSKCSDILSAREVFEGI--TFRDVISWTTMVVGEAQHG 318

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
             E ++A++  M L G KP+ VTFV ++ ACSH GLV++G+Q FESM N YGI P+++HY
Sbjct: 319 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 378

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C +DLL+R G L EA  L+ +MPY+ +   W ALL+AC  +++A++      KLL+L P
Sbjct: 379 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 438

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
              + Y+LLSN+ A   +W+   +VRK M    I+K PG+S+IE       F A +    
Sbjct: 439 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 498

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
             +EI + L++M ++++  GYVP+T  V+ D++E EKE  +  HSE+LA+AFGLI S   
Sbjct: 499 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPG 558

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IR+ KNLR+C DCH   KL+SEI  R+I+VRD+ RFH F+ G CSC +FW
Sbjct: 559 SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 200/462 (43%), Gaps = 76/462 (16%)

Query: 27  IHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIWNTLMRGYS 84
           +H +I+  GL HH  + + L+S +A    K+ L    + LF +    +I+I+++L+   S
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYA----KSRLLPDALHLFDETPRRDIYIYSSLLTAVS 80

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
            S SP+ AL +   MLS   + P++F    V +  ARL S + G Q+H H +      D 
Sbjct: 81  HSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDD 140

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--- 201
            ++++L+  Y   G  ++  KVF+   A++ V +  L++GYA       AL LFR M   
Sbjct: 141 VVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR 200

Query: 202 -----------------------------QDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                                        +D     DAF    +     +L    +G+Q 
Sbjct: 201 NLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQL 260

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H    + LG + SNM++  A+I+MY+KC  +  A  VF  +   +   +W++M+ G  + 
Sbjct: 261 HGSTMR-LGFL-SNMIVGNALIDMYSKCSDILSAREVFEGITF-RDVISWTTMVVGEAQH 317

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G+ E                               +AL L+ +M   G  P+EVT V ++
Sbjct: 318 GRAE-------------------------------EALALYDRMVLAGAKPNEVTFVGLI 346

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC   G +  G++L +           +   T  +D+ ++ G +  A  +   +P    
Sbjct: 347 YACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPD 406

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFV 453
             + + +++S   ++   E  I +    +L+ L+P D  T++
Sbjct: 407 EAT-WGALLSACTKYKDAEMCIRI--SDKLLELRPKDSSTYI 445


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 381/706 (53%), Gaps = 46/706 (6%)

Query: 19  KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           ++L +  ++H  I+ +G         L+    + G    + ++  +F  I +PN+F W  
Sbjct: 131 RNLDEGKRVHSHIMQTGYEGDRMVMNLV--VEMYGKCGDVEQAGNVFDSIQDPNVFSWTI 188

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK- 137
           ++  Y+++    E L L + M   G V P+ +TF  VL +C  + + +    +H   I  
Sbjct: 189 IIAAYAQNGHCMEVLRLLSRMNQAG-VKPDGYTFTTVLGACTAVGALEEAKILHAATISS 247

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
            GL+ D  +  ALI+ Y   G +  A  VF     +D+VS++++I  +AQ  +   A+ L
Sbjct: 248 TGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQL 307

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
              M    ++P+  TFV +  A T L   + GK+ HA + +       ++ L +A++ MY
Sbjct: 308 LMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQ--AGYSDDVCLTSALVKMY 365

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
              G                    W            +E AR +F+   +RD+VSW++MI
Sbjct: 366 CNWG--------------------W------------VETARSIFESSRERDVVSWSSMI 393

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           +GYSQ    ++AL LF +ME  G+ P+ VT V+ + AC G+GAL  G +LH++ +  +  
Sbjct: 394 AGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHER-VRCLGL 452

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
            +++ + TA++++Y KCG ++ A +VF  + K  K +  + SI     Q+G G  S+ + 
Sbjct: 453 DKDVPVATALVNLYGKCGRLEEAEAVFLGMKK--KNLLTWTSIAMAYGQNGHGSRSLKLL 510

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLAR 496
             MEL G+KPDG+ FV +L +C++ G + +G  ++  M  ++GI P +EH GCMVD+L R
Sbjct: 511 HGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGR 570

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+L+ A  LI +M +++ S+ W  LL AC+ H +      A +K+  LEP +   YVLL
Sbjct: 571 AGKLEAAEQLINTMKFES-SLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLL 629

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ--TKEIEL 614
           S++      WE A + R+ MD  G+Q+  G S IE    +H F+A+    P     EI  
Sbjct: 630 SSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFA 689

Query: 615 MLKDMTMKLKSAGYVPNTVQV-VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRIT 673
            L+ +  +++ AGYVP+   V + DV+E  KE  V YHSE LAL  G+I++ +   +RIT
Sbjct: 690 ALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGTPLRIT 749

Query: 674 KNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           KNLR+C DCH+A K +S++  R I VRD  R H F+ G CSC D+W
Sbjct: 750 KNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 148/559 (26%), Positives = 270/559 (48%), Gaps = 53/559 (9%)

Query: 2   KRLVLEHSSLLALLESC---KSLKQALQIHGQIVHSGL------NHHISSSQLISFFALS 52
           + +  E S+  A+L +C   ++L +  ++HG ++   L      +  +  + +I  +   
Sbjct: 4   REIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRC 63

Query: 53  GCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           GC +       +F ++ + N+  W +L+  ++ +    +A+VL+  ML  G VSP+  TF
Sbjct: 64  GCTDLALD---VFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSG-VSPDRITF 119

Query: 113 -PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
              +L    R  +   G ++H HI++ G E D  + N ++  Y   G +  A  VF+   
Sbjct: 120 TSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
             ++ S+  +I  YAQ       L L  +M  + ++PD +TF  +  ACT +      K 
Sbjct: 180 DPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKI 239

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            HA    + G +  +  + TA+IN+Y KCG +  A  VF  +  +K   +WSSMI+ + +
Sbjct: 240 LHAATISSTG-LDRDAAVGTALINLYGKCGALEEAFGVFVQID-NKDIVSWSSMIAAFAQ 297

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G+ + A QL   MD                       LE        G+ P+ VT V V
Sbjct: 298 SGQAKSAIQLLMLMD-----------------------LE--------GVRPNNVTFVNV 326

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L A   L A  +GK +H + ++   +  ++ LT+A++ MY   G ++TA S+F    +  
Sbjct: 327 LEAVTSLKAFQYGKEIHARIVQ-AGYSDDVCLTSALVKMYCNWGWVETARSIFESSRE-- 383

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           + V  ++S+I+G +Q+     ++++FREME+ G++P+ VTFV+ + AC+  G +  G Q 
Sbjct: 384 RDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQL 443

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC--RLH 529
            E +   G+   +     +V+L  + GRL+EA  +   M    N + W ++  A     H
Sbjct: 444 HERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSIAMAYGQNGH 502

Query: 530 RNAKIGEIAGQKLLDLEPD 548
            +  +  + G +L  ++PD
Sbjct: 503 GSRSLKLLHGMELQGMKPD 521



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 201/396 (50%), Gaps = 44/396 (11%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHS-GLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
           +++L    +  +L++A  +H   + S GL+   +  + LI+ +   G     F    +F 
Sbjct: 222 TTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFG---VFV 278

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           QIDN +I  W++++  +++S   + A+ L   M  +G V PNN TF  VL +   L +F+
Sbjct: 279 QIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEG-VRPNNVTFVNVLEAVTSLKAFQ 337

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G +IH  I++ G   D+ + +AL+  Y  +G++  A  +FE S  RD+VS++++I GY+
Sbjct: 338 YGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYS 397

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG-- 244
           Q + P  AL LFR+M+   +QP++ TFV+   AC  +   R G Q H    + + C+G  
Sbjct: 398 QNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLH----ERVRCLGLD 453

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            ++ + TA++N+Y KCG +  AE VF  +GM K                           
Sbjct: 454 KDVPVATALVNLYGKCGRLEEAEAVF--LGMKK--------------------------- 484

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
              ++L++WT++   Y Q G  S++L+L   ME  G+ PD +  VA+L +C   G +  G
Sbjct: 485 ---KNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKG 541

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
              +    ++      +     ++D+  + G ++ A
Sbjct: 542 LHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAA 577



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 8/195 (4%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF----GRNIFLTTAVIDMY 391
           ME+  I  +     A+L AC  L AL  GKR+H   +   +          L   VI MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
            +CG  D AL VF ++    + V  + S+IS     G    ++ +FR+M L G+ PD +T
Sbjct: 61  LRCGCTDLALDVFDRMKD--QNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRIT 118

Query: 452 FVTVLCACS-HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F ++L   S     ++EGK+    ++  G +        +V++  + G +++A  +  S+
Sbjct: 119 FTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSI 178

Query: 511 PYDANSVIWRALLAA 525
             D N   W  ++AA
Sbjct: 179 Q-DPNVFSWTIIIAA 192


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 361/614 (58%), Gaps = 12/614 (1%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL--FIRNALIHFYSIFGYINNAHKVFEG 169
           +  ++  C   ++  +  ++H HI+          F+ N LI  Y   G +  A ++FE 
Sbjct: 63  YAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFES 122

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI- 228
             +R++ ++   +  ++       AL  FR+M  S  +PD  TF  + +A  ++    I 
Sbjct: 123 MPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAID 182

Query: 229 -GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
            G++ H   Y  +  +  N+++ TAVI+MY KCG ++ A   F  +   K++  W++M++
Sbjct: 183 QGREIHR--YARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQW-KNSVTWNAMMT 239

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEV 346
            Y  +G+   A +LF +M   D V W AMI+ Y+Q G   QAL+L+  M ++  + P + 
Sbjct: 240 NYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 299

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           T V V+  C  L AL  G+ +H + +    F  N+ ++ A++ MY KCG +D AL VF+ 
Sbjct: 300 TFVTVIDVCAELSALKQGRAIHAR-VRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 358

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +   LK    +N+IIS  A HG  + ++ +++EM+L G+KP  VTFV +L ACSHGGLV 
Sbjct: 359 M--KLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVA 416

Query: 467 EGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +G  +F  M + + IKP + H+GC++DLL R GRL EA  +++SMP  AN+V W +LL A
Sbjct: 417 DGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGA 476

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           C+ H + K G  A  +++D  P     YVLLSN+ A   RW++  ++RK+M   G++K P
Sbjct: 477 CKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSP 536

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S+IE    +H F++   SHPQ +EI + L  M  ++K  GYVP+T  V  D++EEEKE
Sbjct: 537 GKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKE 596

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
            ++  HSEKLA+ +G +    K  +RI KNLR+C DCH A K +S I  R+I+VRDA RF
Sbjct: 597 DLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARF 656

Query: 706 HLFKKGNCSCMDFW 719
           HLF+ G+CSC D+W
Sbjct: 657 HLFENGSCSCRDYW 670



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 31/266 (11%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++ + +   WN ++  Y++    ++AL LY SM     ++P   TF  V++ CA LS
Sbjct: 253 LFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELS 312

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + K G  IH  +     + +L + NAL+H Y   G ++ A  VF     +D +S+NT+I+
Sbjct: 313 ALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIIS 372

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--------------LNDPRIG 229
            YA       AL L+++M    ++P   TFV + SAC+                +D RI 
Sbjct: 373 SYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIK 432

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
                    + GC          +I++  + G +  AE V  +M +  +   W S++   
Sbjct: 433 PSV-----PHFGC----------IIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 477

Query: 290 TREGKIERARQLFDQMDQRDLVSWTA 315
              G ++R  +  DQ+  R  V WT+
Sbjct: 478 KTHGDLKRGVRAADQVVDR--VPWTS 501



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 128/536 (23%), Positives = 215/536 (40%), Gaps = 96/536 (17%)

Query: 2   KRLVLEHSSLLALLESC---KSLKQALQIHGQIV---HSGLNHHISSSQLISFFALSGCK 55
           + L L+     AL+  C    ++  A ++H  I+   HS       ++ LI  +   G  
Sbjct: 54  RELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCG-- 111

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
             L  +R LF  + + N+  W   M  +S +    EALV +  M   G   P+  TF  +
Sbjct: 112 -RLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSG-ERPDRVTFSVI 169

Query: 116 L--NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG---- 169
           L   +    ++   G +IH +    GL  ++ +  A+I  Y   G +++A   FE     
Sbjct: 170 LAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK 229

Query: 170 ----------------------SLAR-----DLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
                                  L R     D V +N +I  YAQ      AL L+R M 
Sbjct: 230 NSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMH 289

Query: 203 DSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
           D+  + P   TFV +   C EL+  + G+  HA V        +N+L+  A+++MY KCG
Sbjct: 290 DTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT--NFDANLLVSNALVHMYGKCG 347

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSWTAMI 317
            ++ A  VF +M + K   +W+++IS Y   G  ++A  L+ +MD + +    V++  ++
Sbjct: 348 CLDEALDVFHSMKL-KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLL 406

Query: 318 SGYSQVGGFSQALELFGKME---------------------------------SLGIHPD 344
           S  S  G  +  L+ F +M+                                 S+ I  +
Sbjct: 407 SACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQAN 466

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENV-------VFGRNIFLTTAVIDMYAKCGSI 397
            V  +++L AC   G L  G R   Q ++ V       V   NI+          K   I
Sbjct: 467 AVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKI 526

Query: 398 DTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIA----VFREMELMGLKPD 448
             A  V     K+ ++   + +  +SG + H  GE        +  EM+ +G  PD
Sbjct: 527 MAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPD 582



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKC 394
           +ES  +  D V   A++R C    A+   +RLH   +       +  FL   +I+MY KC
Sbjct: 51  LESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKC 110

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           G +  A  +F  +P   + V  +   ++  + +G    ++  FR M   G +PD VTF  
Sbjct: 111 GRLPYARELFESMPS--RNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSV 168

Query: 455 VL--CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
           +L   A      +++G++        G+ P +     ++ +  + GRLD+A    + + +
Sbjct: 169 ILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQW 228

Query: 513 DANSVIWRALLAACRL 528
             NSV W A++   +L
Sbjct: 229 K-NSVTWNAMMTNYKL 243


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/609 (36%), Positives = 364/609 (59%), Gaps = 11/609 (1%)

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
           L  CAR  +  +   +H HI+K G+     + N L++ Y   G  ++A +VF+    RD 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +++ +++    Q       L +F  +  S  ++PD F F A+  AC  L     G+Q H 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
             +  +    ++ ++K+++++MYAKCGL+N A+ VF ++ + K+T +W++M+SGY + G+
Sbjct: 130 --HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRV-KNTISWTAMVSGYAKSGR 186

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLR 353
            E A +LF  +  ++L SWTA+ISG+ Q G   +A  +F +M    +   D + + +++ 
Sbjct: 187 KEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVG 246

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  L A   G+++H   I  + F   +F++ A+IDMYAKC  +  A  +F ++    + 
Sbjct: 247 ACANLAASIAGRQVHGLVIA-LGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRH--RD 303

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + S+I G+AQHG  E ++A++ +M   G+KP+ VTFV ++ ACSH G VE+G++ F+
Sbjct: 304 VVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQ 363

Query: 474 SML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
           SM  +YGI+P ++HY C++DLL R G LDEA  LI +MP+  +   W ALL+AC+     
Sbjct: 364 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRG 423

Query: 533 KIG-EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
           ++G  IA   +   +    + Y+LLSN+ A    W +  + R+ + +  ++K PG S +E
Sbjct: 424 QMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVE 483

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK-SAGYVPNTVQVVFDVDEEEKETVVSY 650
                  F A + SHP  ++I  +LK +  +++   GYVP+T  ++ D+DE+EKE ++ +
Sbjct: 484 VRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 543

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSE+ A+A+GL+ +     IRI KNLR+CGDCH+  K +SEI  REI+VRDA R+H FK 
Sbjct: 544 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 603

Query: 711 GNCSCMDFW 719
           G CSC DFW
Sbjct: 604 GKCSCNDFW 612



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 203/458 (44%), Gaps = 71/458 (15%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L L    ++L  A  +H  IV  G+      ++ L++ +   G  +   +   +F ++ +
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQ---VFDEMPH 66

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            +   W +++   ++++   + L +++S+ S   + P++F F  ++ +CA L S   G Q
Sbjct: 67  RDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQ 126

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +HCH I      D  ++++L+  Y+  G +N+A  VF+    ++ +S+  +++GYA+   
Sbjct: 127 VHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGR 186

Query: 191 PCPALWLFRKM--------------------------------QDSCIQPDAFTFVAMFS 218
              AL LFR +                                ++     D     ++  
Sbjct: 187 KEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVG 246

Query: 219 ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
           AC  L     G+Q H +V   LG   S + +  A+I+MYAKC  +  A+ +FS M   + 
Sbjct: 247 ACANLAASIAGRQVHGLVIA-LG-FDSCVFISNALIDMYAKCSDVIAAKDIFSRM-RHRD 303

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +W+S+I G  + G+ E+A  L+D                                M S
Sbjct: 304 VVSWTSLIVGMAQHGQAEKALALYDD-------------------------------MVS 332

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
            G+ P+EVT V ++ AC  +G ++ G+ L Q   ++     ++   T ++D+  + G +D
Sbjct: 333 HGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLD 392

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
            A ++ + +P      + + +++S   + G G+  I +
Sbjct: 393 EAENLIHTMPFPPDEPT-WAALLSACKRQGRGQMGIRI 429



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 159/336 (47%), Gaps = 14/336 (4%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SSL+ +   C  L  A  +   I    + + IS + ++S +A SG K        LF  +
Sbjct: 144 SSLVDMYAKCGLLNSAKAVFDSI---RVKNTISWTAMVSGYAKSGRKEEALE---LFRIL 197

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N++ W  L+ G+ +S    EA  ++T M  + +   +      ++ +CA L++  +G
Sbjct: 198 PVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAG 257

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H  +I  G +  +FI NALI  Y+    +  A  +F     RD+VS+ +LI G AQ 
Sbjct: 258 RQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQH 317

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   AL L+  M    ++P+  TFV +  AC+ +     G++    + K+ G +  ++ 
Sbjct: 318 GQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYG-IRPSLQ 376

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK----IERARQLFDQ 304
             T ++++  + GL++ AE +  TM        W++++S   R+G+    I  A  L   
Sbjct: 377 HYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSS 436

Query: 305 MDQRDLVSWTAMISGYSQV---GGFSQALELFGKME 337
              +D  ++  + + Y+     G  S+A    G+ME
Sbjct: 437 FKLKDPSTYILLSNIYASASLWGKVSEARRKLGEME 472


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/592 (37%), Positives = 350/592 (59%), Gaps = 9/592 (1%)

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H  I+K GL        AL+  Y+    + +A  +F+ +  RD+  Y++L+   +    
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 166

Query: 191 PCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
           P  AL + R M  +  + PD F   ++ S    L   R+G+Q HA  +  +     + ++
Sbjct: 167 PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHA--HFVVSPYNGDDVV 224

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           K+++++MY KCG  +   +VF +M  +K++  W++++SGY   G+ E A QLF  M  R+
Sbjct: 225 KSSLVDMYCKCGSPDDGRKVFDSMS-AKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 283

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA-VLRACVGLGALDFGKRLH 368
           L +WTA+ISG    G    A+ELF +M   G+  D+  +++ V+     L A   G++LH
Sbjct: 284 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 343

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              +  + F  N+ +  A+IDMY+KC  I +A  VF  I    + V  + +++ G AQHG
Sbjct: 344 GSTM-RLGFLSNMIVGNALIDMYSKCSDILSAREVFEGI--TFRDVISWTTMVVGEAQHG 400

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
             E ++A++  M L G KP+ VTFV ++ ACSH GLV++G+Q FESM N YGI P+++HY
Sbjct: 401 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 460

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C +DLL+R G L EA  L+ +MPY+ +   W ALL+AC  +++A++      KLL+L P
Sbjct: 461 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 520

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
              + Y+LLSN+ A   +W+   +VRK M    I+K PG+S+IE       F A +    
Sbjct: 521 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 580

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
             +EI + L++M ++++  GYVP+T  V+ D++E EKE  +  HSE+LA+AFGLI S   
Sbjct: 581 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPG 640

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             IR+ KNLR+C DCH   KL+SEI  R+I+VRD+ RFH F+ G CSC +FW
Sbjct: 641 SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 200/462 (43%), Gaps = 76/462 (16%)

Query: 27  IHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIWNTLMRGYS 84
           +H +I+  GL HH  + + L+S +A    K+ L    + LF +    +I+I+++L+   S
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYA----KSRLLPDALHLFDETPRRDIYIYSSLLTAVS 162

Query: 85  RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDL 144
            S SP+ AL +   MLS   + P++F    V +  ARL S + G Q+H H +      D 
Sbjct: 163 HSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDD 222

Query: 145 FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--- 201
            ++++L+  Y   G  ++  KVF+   A++ V +  L++GYA       AL LFR M   
Sbjct: 223 VVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR 282

Query: 202 -----------------------------QDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
                                        +D     DAF    +     +L    +G+Q 
Sbjct: 283 NLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQL 342

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H    + LG + SNM++  A+I+MY+KC  +  A  VF  +   +   +W++M+ G  + 
Sbjct: 343 HGSTMR-LGFL-SNMIVGNALIDMYSKCSDILSAREVFEGITF-RDVISWTTMVVGEAQH 399

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G+ E                               +AL L+ +M   G  P+EVT V ++
Sbjct: 400 GRAE-------------------------------EALALYDRMVLAGAKPNEVTFVGLI 428

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC   G +  G++L +           +   T  +D+ ++ G +  A  +   +P    
Sbjct: 429 YACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPD 488

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFV 453
             + + +++S   ++   E  I +    +L+ L+P D  T++
Sbjct: 489 EAT-WGALLSACTKYKDAEMCIRI--SDKLLELRPKDSSTYI 527


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/648 (34%), Positives = 357/648 (55%), Gaps = 70/648 (10%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+   F   L++CA       G QIH  ++  GL  ++ I N+L++ Y     +  A KV
Sbjct: 8   PDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKV 67

Query: 167 FEGSLARDLVSYNTLINGYAQ---------VKEPCP----------------------AL 195
           F+G L RD+VS+  ++  YAQ         V E  P                      AL
Sbjct: 68  FDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDAL 127

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            LF  M+   ++ + FT +++  AC  L D ++ +Q HA                     
Sbjct: 128 ELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAA------------------ 169

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
                          +      STA  +S+++ Y R G +   ++ FD ++++ LV+W+ 
Sbjct: 170 ---------------AGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSI 214

Query: 316 MISGYSQV--GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           M++ Y+Q   G   +A + F +ME+ GI P EVT V+ L AC  +  L+ G+ +H++   
Sbjct: 215 MLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAA 274

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           +     ++ L   +I+MY KCGS   A  VF ++P+  K +  +NS+I   A +G    +
Sbjct: 275 SGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPE--KCLISWNSLIVAYAHNGHALEA 332

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492
           ++  +EM L G  PD  T V++L   SH GL+E G + F S + ++G++P      C+VD
Sbjct: 333 LSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVD 392

Query: 493 LLARDGRLDEAYGLIQSMPY-DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           LLAR G LD A  LI + P   A+++ W  LLAAC+ + + + G    +++ +LEP H  
Sbjct: 393 LLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSG 452

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
            +V+L+N+ A   RW +A ++RK+M+   ++K PG S+IE +G++H F++ +  HP+ +E
Sbjct: 453 SFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIRE 512

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L+ +T++++ AGYVP+T  VV DV+E +KE ++S HSE+LA+ FGL+++R  ETIR
Sbjct: 513 ICEELEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIR 572

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + KNLR+C DCH A K++S +  REI+VRD+ RFH FK G CSC DFW
Sbjct: 573 VVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 620



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 190/391 (48%), Gaps = 11/391 (2%)

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           MQ    +PD   FV    AC    +   G+Q H+ V  +   + SN+++  +++NMY KC
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDS--GLTSNIIISNSLVNMYGKC 58

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
             +  AE+VF  M + +   +W++M++ Y + G   +A  +F+ M ++D VSW A+I+  
Sbjct: 59  QDVPCAEKVFDGM-LLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINAS 117

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                F  ALELF  ME  G+  +E T++++L AC GL  L   +++H +       G +
Sbjct: 118 VGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNS 177

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ--HGLGETSIAVFR 438
             +  +V++MYA+CGS+      F  + +  K +  ++ +++  AQ   G G  +   F+
Sbjct: 178 TAVGNSVVNMYARCGSLLDTKKAFDSLEE--KGLVAWSIMLAAYAQSKDGSGRRAFKFFQ 235

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARD 497
           EME  G+KP  VTFV+ L AC+    +E G+         G ++  +     ++++  + 
Sbjct: 236 EMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKC 295

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL--DLEPDHGAHYVL 555
           G   +A  +   MP +   + W +L+ A   + +A     + Q++L    +PD G    +
Sbjct: 296 GSPSDAKLVFDQMP-EKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSI 354

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           L  +             R  + D G++   G
Sbjct: 355 LYGLSHAGLLERGVEHFRSSIQDHGLEPSSG 385



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 116/530 (21%), Positives = 206/530 (38%), Gaps = 117/530 (22%)

Query: 15  LESCKS---LKQALQIHGQIVHSGLNHHI------------------------------- 40
           L++C +   L    QIH  +V SGL  +I                               
Sbjct: 17  LDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDV 76

Query: 41  -SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
            S + +++ +A +GC +       +F  +   +   WN ++     +   Q+AL L+  M
Sbjct: 77  VSWTAMLAVYAQNGCWSQALH---VFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGM 133

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFG 158
             +G+ S N FT   +L +C  L   K   QIH      G   +   + N++++ Y+  G
Sbjct: 134 ELEGLRS-NEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCG 192

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP--ALWLFRKMQDSCIQPDAFTFVAM 216
            + +  K F+    + LV+++ ++  YAQ K+     A   F++M+   I+P   TFV+ 
Sbjct: 193 SLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSA 252

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
             AC  +     G+  H     + G V ++++L   +INMY KCG  + A+ VF  M   
Sbjct: 253 LDACAAMATLEHGRSMHRRAAAS-GFVETSLVLGNTIINMYGKCGSPSDAKLVFDQM--- 308

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
                                         ++ L+SW ++I  Y+  G   +AL    +M
Sbjct: 309 -----------------------------PEKCLISWNSLIVAYAHNGHALEALSSLQEM 339

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
              G  PD  T V++L      G L+ G    +  I++     +      ++D+ A+ G 
Sbjct: 340 LLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGF 399

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           +D A  +    P                                     + D + ++T+L
Sbjct: 400 LDAAEELILASP-----------------------------------ACQADTIAWMTLL 424

Query: 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV---DLLARDGRLDEA 503
            AC   G  + G +  E +  + ++PQ  H G  V   +L A  GR  +A
Sbjct: 425 AACKSYGDPQRGIRCAERV--FELEPQ--HSGSFVVLANLYASVGRWSDA 470


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 319/551 (57%), Gaps = 42/551 (7%)

Query: 174 DLVSYNTLINGYAQVKEPCPALW----LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
           D+V YNTL+ GYA+             +F +M +  + PD +TFV++  AC        G
Sbjct: 98  DVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +Q H V  K       +  +   +INMYA+CG                            
Sbjct: 158 RQAHGVAVK--AGAAEHEYVAPTLINMYAECG---------------------------- 187

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                +  AR +FD+MD   +VS+ AMI+   +     +AL LF +M++ G+ P  VT++
Sbjct: 188 ----DVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLI 243

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           +VL AC  LGAL+ G+ +H  YI  +     + + TA+IDMYAKCGS++ A+ VF  +  
Sbjct: 244 SVLSACALLGALELGRWIHD-YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMES 302

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K    ++ ++   A HG G  +I++F EM+  G+KPD VTF+ VL ACSH G+V EG 
Sbjct: 303 RDKQA--WSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360

Query: 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           Q+F+SM  YGI   ++HYGC+ DLLAR G+L+ AY  I  +P    +++WR LL+AC  H
Sbjct: 361 QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGH 420

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
            +  +G+   +++L+L+  HG  YV+ SN+ A T RWEE   VRKLM + G+ K PG S 
Sbjct: 421 GDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSS 480

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV-FDVDEEEKETVV 648
           IE +  +H F A   SHP ++E   M+ ++  +LK  GYVPNT  V   ++ EEEK T +
Sbjct: 481 IEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSL 540

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
            YHSEKLA++FGL+N+    T+RI KNLR+C DCH   KL+S ++ R I++RD  RFH F
Sbjct: 541 RYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHF 600

Query: 709 KKGNCSCMDFW 719
           + G CSC D+W
Sbjct: 601 EDGVCSCGDYW 611



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 187/409 (45%), Gaps = 50/409 (12%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSG---LNHHISSSQLISFFALSGCKNG--LFRSRILF 65
           LLA L  C SL+   Q+H   V +G     H    ++L++     G +    L  +R +F
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 66  SQIDNPNIFIW-NTLMRGYSRSDSPQEALV----LYTSMLSKGIVSPNNFTFPFVLNSCA 120
            +I +P   +W NTL+RGY+R             ++  M+ +G V+P+ +TF  +L +CA
Sbjct: 91  DRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEG-VAPDTYTFVSLLKACA 149

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              + + G Q H   +K G     ++   LI+ Y+  G +  A  +F+      +VSYN 
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I    +   P  AL LFR+MQ   ++P + T +++ SAC  L    +G+  H  + K  
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR 269

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + S + + TA+I+MYAKCG +  A  VF  M  S+   AWS M+  Y   G    A  
Sbjct: 270 --LDSLVKVNTALIDMYAKCGSLEDAIGVFQDM-ESRDKQAWSVMMVAYANHGYGREAIS 326

Query: 301 LFDQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLG---------------- 340
           +F++M ++    D V++  ++   S  G  S+ L+ F  M   G                
Sbjct: 327 MFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLA 386

Query: 341 ----------------IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                           I P  +    +L AC G G +D GKR+ ++ +E
Sbjct: 387 RSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILE 435



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 120/233 (51%), Gaps = 9/233 (3%)

Query: 298 ARQLFDQMDQRDLVSWTAMI-----SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           ARQ+FD++     V W   +      G    GG  +A  +F +M   G+ PD  T V++L
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC    A + G++ H   ++      + ++   +I+MYA+CG +  A  +F ++  + +
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGA-AEHEYVAPTLINMYAECGDVRAARVMFDRM--DGE 202

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +N++I+   +  L   ++ +FREM+  GLKP  VT ++VL AC+  G +E G+   
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           + +    +   ++    ++D+ A+ G L++A G+ Q M    +   W  ++ A
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVA 314


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/455 (43%), Positives = 305/455 (67%), Gaps = 7/455 (1%)

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++  +++ +Y   GL++ A RV  + G +    +W++M+SGY + G +  AR++F +M +
Sbjct: 114 VVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPE 173

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           R+LVSW+AM+    + G F +AL +F +M      PD V +V+VL+AC  LGA++ G+ +
Sbjct: 174 RNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWV 233

Query: 368 HQQYIENVVFGR---NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           H+ Y+E   FG    N+ L TA++DMY KCG ++ A  VF  + +  + V L+N++I GL
Sbjct: 234 HR-YLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHR--RDVVLWNAMIGGL 290

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A +G GE ++ +FR M   G  P+  TF+ VLCAC+H G V+EGK+ F+SM +YGIKPQ 
Sbjct: 291 AMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQR 350

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHYGC+ DLL R G ++EA  L+  MP + ++  W AL+++C++H +  +GE  G++L++
Sbjct: 351 EHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIE 410

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           LEP  G  YV+L N+ A   RWEEAR +R++M+D G +K  G S+IE NG +H F++   
Sbjct: 411 LEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDT 470

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV-DEEEKETVVSYHSEKLALAFGLIN 663
            HP T++I  +L+D+  +L+  GYV +T QV+ D+ DEE+K   +SYHSE+LALAFG++N
Sbjct: 471 RHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILN 530

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
                 IRI KNLR+C DCH+  KL+S++Y REI+
Sbjct: 531 IPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREII 565



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 155/374 (41%), Gaps = 74/374 (19%)

Query: 146 IRNALIHFYSIFGYINNAHKV-FEGSLARDLVSYNTLINGYAQ----------------- 187
           + N+L+  Y   G I+ A +V + G  A D+VS+NT+++GY +                 
Sbjct: 115 VTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 188 --------------VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
                           E   ALW+F +M     +PD    V++  AC  L     G+  H
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234

Query: 234 AVVYKNLGCVG---SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
              Y   G  G    N++L+TA+++MY KCG M  A +VF  +   +    W++MI G  
Sbjct: 235 R--YLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGV-HRRDVVLWNAMIGGLA 291

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             G  ER                               ALELF +M   G  P+E T +A
Sbjct: 292 MNGYGER-------------------------------ALELFRRMLQKGFMPNESTFIA 320

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC   G +D GKR+ +  +++            + D+  + G+++ A ++   +P  
Sbjct: 321 VLCACTHTGRVDEGKRVFKS-MQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPME 379

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGK 469
               S + +++S    H   + ++       L+ L+P DG  +V +    +  G  EE +
Sbjct: 380 -PHASQWGALMSSCQMH--NDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEAR 436

Query: 470 QFFESMLNYGIKPQ 483
              + M + G K +
Sbjct: 437 TIRQMMEDRGAKKE 450



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 139/309 (44%), Gaps = 16/309 (5%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           +S + ++S +   G    L  +R +F+++   N+  W+ ++    R+    EAL ++  M
Sbjct: 146 VSWNTMVSGYGKGG---DLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK---FGLEFDLFIRNALIHFYSI 156
           + +    P+      VL +CA L + + G  +H ++      G   +L +  AL+  Y  
Sbjct: 203 MREEF-RPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCK 261

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A +VF+G   RD+V +N +I G A       AL LFR+M      P+  TF+A+
Sbjct: 262 CGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAV 321

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMG 274
             ACT       GK+    V+K++   G     +    + ++  + G +  AE +   M 
Sbjct: 322 LCACTHTGRVDEGKR----VFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMP 377

Query: 275 MSKSTAAWSSMISGYTREGKI---ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
           M    + W +++S       I   ER  +   +++  D   +  + + Y+  G + +A  
Sbjct: 378 MEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEART 437

Query: 332 LFGKMESLG 340
           +   ME  G
Sbjct: 438 IRQMMEDRG 446


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/434 (45%), Positives = 293/434 (67%), Gaps = 14/434 (3%)

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
            R LF Q+ Q ++  W  MI G      F  A+E +G M S G  P+  T   VL+AC  
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 358 LGALDFGKRLH----QQYIENVVFG----RNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           L  L  G ++H    +++I   +      RN+F+ T+++DMYAKCG+++ A SVF  +P+
Sbjct: 125 LLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 184

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMEL---MGLKPDGVTFVTVLCACSHGGLVE 466
             K +  + ++I G A +GL + +I +F +M+    +G+KPDG TF+ +LC C+H GLV+
Sbjct: 185 --KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVD 242

Query: 467 EGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           EG+++F SM  +  + P +EHYGCMVDLL R G LDEA+ LI++MP +AN+++W ALL A
Sbjct: 243 EGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 302

Query: 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585
           CR+HR+ ++ E+A ++L++LEP +  +YVLLSN+ +   +W+EA +VR  M++  IQKPP
Sbjct: 303 CRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPP 362

Query: 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKE 645
           G S+IE +G +H FL   K HP +++I   L ++T K+K AGYVP T  V+FD++EEEKE
Sbjct: 363 GCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKE 422

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
             +  HSEKLA+AFGLI++     IR+ KNLR+CGDCH+A KL+S I  REI VRD  RF
Sbjct: 423 HFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRF 482

Query: 706 HLFKKGNCSCMDFW 719
           H F++G+CSC D+W
Sbjct: 483 HCFREGSCSCNDYW 496



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 18/253 (7%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF QI  PNIF+WNT++RG   +D   +A+  Y  M S+G + PNNFTFPFVL +CA
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL-PNNFTFPFVLKACA 123

Query: 121 RLSSFKSGCQIHCHIIK---------FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           RL   + G +IH  ++K          G+  ++F+  +L+  Y+  G +  A  VF+G  
Sbjct: 124 RLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP 183

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS---CIQPDAFTFVAMFSACTELNDPRI 228
            +D+VS+  +I GYA    P  A+ LF +MQ      I+PD  TF+ +   CT       
Sbjct: 184 EKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDE 243

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G+++   +Y+      S +     ++++  + GL++ A ++   M M  +   W +++  
Sbjct: 244 GRRYFNSMYRFFSLTPS-IEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 302

Query: 289 YTREGKIERARQL 301
                +I R  QL
Sbjct: 303 C----RIHRDTQL 311



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 31/314 (9%)

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196
           +FGL  D ++ N ++     F   N    +F      ++  +NT+I G         A+ 
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
            +  M+     P+ FTF  +  AC  L D ++G + H +V K                  
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKE----------------- 141

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
                      +    MGM ++    +S++  Y + G +E+AR +FD M ++D+VSW AM
Sbjct: 142 --------WIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAM 193

Query: 317 ISGYSQVGGFSQALELFGKME---SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           I GY+  G   +A++LF +M+    LGI PD  T + +L  C   G +D G+R       
Sbjct: 194 IQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR 253

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
                 +I     ++D+  + G +D A  +   +P     + ++ +++     H   +T 
Sbjct: 254 FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI-VWGALLGACRIH--RDTQ 310

Query: 434 IAVFREMELMGLKP 447
           +A     +L+ L+P
Sbjct: 311 LAELALKQLIELEP 324


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/666 (36%), Positives = 366/666 (54%), Gaps = 44/666 (6%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +I  P+   +NTL+ GY+ +     A+VL+  M   G    + FT   ++ +C 
Sbjct: 93  ARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGF-EVDGFTLSGLIAACC 151

Query: 121 -RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSY 178
            R+   K   Q+HC  +  G +    + NA + +YS  G +  A  VF G    RD VS+
Sbjct: 152 DRVDLIK---QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSW 208

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N++I  Y Q KE   AL L+++M     + D FT  ++ +A T L+    G+QFH  + K
Sbjct: 209 NSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIK 268

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
                  N  + + +I+ Y+KCG  +         GM  S                    
Sbjct: 269 --AGFHQNSHVGSGLIDFYSKCGGCD---------GMYDS-------------------- 297

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQ-ALELFGKMESLGIHPDEVTMVAVLRACVG 357
            ++F ++   DLV W  MISGYS     S+ A++ F +M+ +G  PD+ + V V  AC  
Sbjct: 298 EKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L +    K++H   I++ +    I +  A+I +Y K G++  A  VF ++P+ L  VS F
Sbjct: 358 LSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPE-LNAVS-F 415

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
           N +I G AQHG G  ++ +++ M   G+ P+ +TFV VL AC+H G V+EG+++F +M  
Sbjct: 416 NCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKE 475

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            + I+P+ EHY CM+DLL R G+L+EA   I +MPY   SV W ALL ACR H+N  + E
Sbjct: 476 TFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAE 535

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
            A  +L+ ++P     YV+L+NM A+  +WEE   VRK M    I+K PG S+IE     
Sbjct: 536 RAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKK 595

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV---VSYHSE 653
           H F+A   SHP  +E+   L++M  K+K  GYV +    +   DE  +      + +HSE
Sbjct: 596 HVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSE 655

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGL+++R  E + + KNLRICGDCH A K +S +  REI+VRD +RFH FK G C
Sbjct: 656 KLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKC 715

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 716 SCGDYW 721



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 209/447 (46%), Gaps = 50/447 (11%)

Query: 18  CKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFI 75
           C  +    Q+H   V  G + + S ++  +++++    K GL R  + +F  +D     +
Sbjct: 151 CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYS----KGGLLREAVSVFYGMDELRDEV 206

Query: 76  -WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            WN+++  Y +     +AL LY  M+ KG    + FT   VLN+   L     G Q H  
Sbjct: 207 SWNSMIVAYGQHKEGAKALALYKEMIFKGF-KIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYIN---NAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           +IK G   +  + + LI FYS  G  +   ++ KVF+  L+ DLV +NT+I+GY+  +E 
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325

Query: 192 C-PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML-L 249
              A+  FR+MQ    +PD  +FV + SAC+ L+ P   KQ H +  K+   + SN + +
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSH--IPSNRISV 383

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             A+I++Y K G +  A  VF                                D+M + +
Sbjct: 384 NNALISLYYKSGNLQDARWVF--------------------------------DRMPELN 411

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            VS+  MI GY+Q G  ++AL L+ +M   GI P+++T VAVL AC   G +D G+    
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFN 471

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
              E           + +ID+  + G ++ A      +P    +V+ + +++    +H  
Sbjct: 472 TMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVA-WAALLGACRKH-- 528

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVL 456
              ++A     ELM ++P   T   +L
Sbjct: 529 KNMALAERAANELMVMQPLAATPYVML 555



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 151/300 (50%), Gaps = 5/300 (1%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFS 66
           +S+L  L S   L    Q HG+++ +G   N H+ S  LI F++  G  +G++ S  +F 
Sbjct: 244 ASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSG-LIDFYSKCGGCDGMYDSEKVFQ 302

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
           +I +P++ +WNT++ GYS ++   E  V     + +    P++ +F  V ++C+ LSS  
Sbjct: 303 EILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

Query: 127 SGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
              QIH   IK  +  + + + NALI  Y   G + +A  VF+     + VS+N +I GY
Sbjct: 363 QCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGY 422

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           AQ      AL L+++M DS I P+  TFVA+ SAC        G+++   + +    +  
Sbjct: 423 AQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFK-IEP 481

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
                + +I++  + G +  AER    M     + AW++++    +   +  A +  +++
Sbjct: 482 EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANEL 541



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 9/294 (3%)

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           TF  +        D   GK  HA+  K++  V S+  L    +N+Y+KCG ++ A   F 
Sbjct: 10  TFRDLLLKSVAERDLFTGKSLHALYVKSI--VASSTYLSNHFVNLYSKCGRLSYARAAFY 67

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
           +     +  +++ ++  Y ++ KI  ARQLFD++ Q D VS+  +ISGY+       A+ 
Sbjct: 68  STE-EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMV 126

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF +M  LG   D  T+  ++ AC     +D  K+LH   +    F     +  A +  Y
Sbjct: 127 LFKRMRKLGFEVDGFTLSGLIAACC--DRVDLIKQLHCFSVSG-GFDSYSSVNNAFVTYY 183

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           +K G +  A+SVFY + +    VS +NS+I    QH  G  ++A+++EM   G K D  T
Sbjct: 184 SKGGLLREAVSVFYGMDELRDEVS-WNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFT 242

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC-MVDLLARDGRLDEAY 504
             +VL A +    +  G+QF   ++  G   Q  H G  ++D  ++ G  D  Y
Sbjct: 243 LASVLNALTSLDHLIGGRQFHGKLIKAGFH-QNSHVGSGLIDFYSKCGGCDGMY 295



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 196/467 (41%), Gaps = 76/467 (16%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            +L S A    F +G  +H   +K  +    ++ N  ++ YS  G ++ A   F  +   
Sbjct: 14  LLLKSVAERDLF-TGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEP 72

Query: 174 DLVSYNTLI-------------------------------NGYAQVKEPCPALWLFRKMQ 202
           ++ SYN ++                               +GYA  +E   A+ LF++M+
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMR 132

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
               + D FT   + +AC +  D  + KQ H   +   G   S   +  A +  Y+K GL
Sbjct: 133 KLGFEVDGFTLSGLIAACCDRVD--LIKQLHC--FSVSGGFDSYSSVNNAFVTYYSKGGL 188

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
           +  A  VF  M   +   +W+SMI  Y                             G  +
Sbjct: 189 LREAVSVFYGMDELRDEVSWNSMIVAY-----------------------------GQHK 219

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G  ++AL L+ +M   G   D  T+ +VL A   L  L  G++ H + I+   F +N  
Sbjct: 220 EG--AKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIK-AGFHQNSH 276

Query: 383 LTTAVIDMYAKCGSID---TALSVFYKIPKNLKTVSLFNSIISGLA-QHGLGETSIAVFR 438
           + + +ID Y+KCG  D    +  VF +I      + ++N++ISG +    L E ++  FR
Sbjct: 277 VGSGLIDFYSKCGGCDGMYDSEKVFQEILS--PDLVVWNTMISGYSMNEELSEEAVKSFR 334

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARD 497
           +M+ +G +PD  +FV V  ACS+     + KQ     +   I   ++     ++ L  + 
Sbjct: 335 QMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKS 394

Query: 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           G L +A  +   MP + N+V +  ++     H +     +  Q++LD
Sbjct: 395 GNLQDARWVFDRMP-ELNAVSFNCMIKGYAQHGHGTEALLLYQRMLD 440


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/714 (33%), Positives = 379/714 (53%), Gaps = 44/714 (6%)

Query: 9    SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
            S+LL++L      K    IHG +V  G +  +   + L+  +A +G       + ++F Q
Sbjct: 366  STLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSE---EADLVFKQ 422

Query: 68   IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
            +   ++  WN+LM  +       +AL +  SM+  G  S N  TF   L +C     F  
Sbjct: 423  MPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTG-KSVNYVTFTSALAACFSPEFFDK 481

Query: 128  GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            G  +H  ++  GL  +  I NAL+  Y   G ++ + +V      RD+V++N LI GYA+
Sbjct: 482  GRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAE 541

Query: 188  VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSN 246
             ++P  AL  F+ ++   +  +  T V++ SAC    D    GK  HA +        S+
Sbjct: 542  NEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVS--AGFESD 599

Query: 247  MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
              +K ++I MYAKCG                                 +  ++ LF+ +D
Sbjct: 600  EHVKNSLITMYAKCG--------------------------------DLSSSQDLFNGLD 627

Query: 307  QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
             R +++W A+++  +  G   + L+L  KM S G+  D+ +    L A   L  L+ G++
Sbjct: 628  NRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQ 687

Query: 367  LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
            LH   ++ + F  + F+  A  DMY+KCG I   + +    P   +++  +N +IS L +
Sbjct: 688  LHGLAVK-LGFELDCFIFNAAADMYSKCGEIGEVVKML--PPSVNRSLPSWNILISALGR 744

Query: 427  HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
            HG  E     F EM  MG+KP  VTFV++L ACSHGGLV++G  +++ +  ++G++P +E
Sbjct: 745  HGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIE 804

Query: 486  HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            H  C++DLL R GRL EA   I  MP   N ++WR+LLA+C++HR+   G  A + L  L
Sbjct: 805  HCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKL 864

Query: 546  EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
            EP+  + +VL SNM A T RWE+   VRK M    I+K    S+++    +  F    ++
Sbjct: 865  EPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRT 924

Query: 606  HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
            HPQT EI   L+D+   +K +GYV +T Q + D DEE+KE  +  HSE+LALA+ L+++ 
Sbjct: 925  HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTP 984

Query: 666  SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               T+RI KNLRIC DCH  +K +S +  R I++RD  RFH F+ G CSC D+W
Sbjct: 985  EGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 246/522 (47%), Gaps = 66/522 (12%)

Query: 21  LKQALQIHGQIVHSGL--NHHISSS--QLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
            ++ +Q+HG +  SGL  + ++S++   L   + L  C      SR +F ++ + N+  W
Sbjct: 176 FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC------SRKVFEEMPDRNVVSW 229

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +LM GYS    P+E + +Y SM  +G V  N  +   V++SC  L     G QI   +I
Sbjct: 230 TSLMVGYSDKGEPEEVIDIYKSMRGEG-VECNENSMSLVISSCGLLKDESLGRQIIGQVI 288

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ---VKEPCP 193
           K GLE  L + N+LI  +   G ++ A+ +F     RD +S+N+++  YAQ   ++E   
Sbjct: 289 KSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSR 348

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK----NLGCVGSNMLL 249
              L R+  D   + ++ T   + S   +++  + G+  H +V K    ++ CV  N LL
Sbjct: 349 IFNLMRRFHD---EVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCV-CNTLL 404

Query: 250 KTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
           +     MYA  G    A+ VF  M  +K   +W+S+++ +  +G+          +D   
Sbjct: 405 R-----MYAGAGRSEEADLVFKQMP-TKDLISWNSLMASFVNDGR---------SLD--- 446

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
                              AL +   M   G   + VT  + L AC      D G+ LH 
Sbjct: 447 -------------------ALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHG 487

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
             + + +F   I +  A++ MY K G + T+  V  ++P+  + V  +N++I G A++  
Sbjct: 488 LVVVSGLFDNQI-IGNALVSMYGKIGGMSTSRRVLLQMPR--RDVVAWNALIGGYAENED 544

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
            + ++A F+ + + G+  + +T V+VL AC   G L+E GK     +++ G +       
Sbjct: 545 PDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKN 604

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVI-WRALLAACRLH 529
            ++ + A+ G L  +  L   +  D  S+I W A+LAA   H
Sbjct: 605 SLITMYAKCGDLSSSQDLFNGL--DNRSIITWNAILAANAHH 644



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 215/469 (45%), Gaps = 46/469 (9%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++   N   WNT+M G  R     E +  +  M   GI  P++F    ++ +C 
Sbjct: 112 ARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGI-KPSSFVIASLVTACG 170

Query: 121 RLSS-FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           R  S F+ G Q+H  + K GL  D+++  A++H Y ++G ++ + KVFE    R++VS+ 
Sbjct: 171 RSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWT 230

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +L+ GY+   EP   + +++ M+   ++ +  +   + S+C  L D  +G+Q    V K+
Sbjct: 231 SLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKS 290

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
              + S + ++ ++I+M+   G ++ A  +F+ +   + T +W+S+++ Y + G IE + 
Sbjct: 291 --GLESKLAVENSLISMFGNMGNVDYANYIFNQIS-ERDTISWNSIVAAYAQNGHIEESS 347

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           ++F+ M +                                    DEV    V      LG
Sbjct: 348 RIFNLMRR----------------------------------FHDEVNSTTVSTLLSVLG 373

Query: 360 ALD---FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            +D   +G+ +H   ++ + F   + +   ++ MYA  G  + A  VF ++P   K +  
Sbjct: 374 DVDHQKWGRGIHGLVVK-MGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPT--KDLIS 430

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +NS+++     G    ++ +   M   G   + VTF + L AC      ++G+     ++
Sbjct: 431 WNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVV 490

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             G+         +V +  + G +  +  ++  MP   + V W AL+  
Sbjct: 491 VSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPR-RDVVAWNALIGG 538



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 194/407 (47%), Gaps = 39/407 (9%)

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           ++++   +G  +H   +K  +   +   N LI+ Y+ FG +  A  +F+    R+ VS+N
Sbjct: 69  SQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWN 128

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYK 238
           T+++G  +V      +  F+KM D  I+P +F   ++ +AC       R G Q H  V K
Sbjct: 129 TMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 188

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           + G + S++ + TA++++Y   GL++ + +VF  M   ++  +W+S++ GY+ +G+ E  
Sbjct: 189 S-GLL-SDVYVSTAILHLYGVYGLVSCSRKVFEEMP-DRNVVSWTSLMVGYSDKGEPE-- 243

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
                                        + ++++  M   G+  +E +M  V+ +C  L
Sbjct: 244 -----------------------------EVIDIYKSMRGEGVECNENSMSLVISSCGLL 274

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
                G+++  Q I++ +  + + +  ++I M+   G++D A  +F +I +   T+S +N
Sbjct: 275 KDESLGRQIIGQVIKSGLESK-LAVENSLISMFGNMGNVDYANYIFNQISER-DTIS-WN 331

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
           SI++  AQ+G  E S  +F  M     + +  T  T+L         + G+     ++  
Sbjct: 332 SIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKM 391

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G    +     ++ + A  GR +EA  + + MP   + + W +L+A+
Sbjct: 392 GFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMP-TKDLISWNSLMAS 437


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/722 (33%), Positives = 390/722 (54%), Gaps = 46/722 (6%)

Query: 4   LVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           L+ + ++++ LL  C    ++   + IHG  V  GL H +   + LI  ++  GC   L 
Sbjct: 309 LIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGC---LS 365

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNS 118
            + ILF +I+N ++  WN+++  YSR     E   L   M + + ++  N  T   +L +
Sbjct: 366 EAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA 425

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           C   S   S   +H + ++   ++   I NA I  Y+  G +  A  VF G   + + S+
Sbjct: 426 CLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSW 485

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N +I G+AQ  +P  AL  + +M    I PD F+ V++  AC  L   + GK+ H  V +
Sbjct: 486 NAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR 545

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           N                                  G+  ++    S++S Y    K    
Sbjct: 546 N----------------------------------GLEMNSFVAVSLLSLYFHCSKPFYG 571

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R  F++M  ++ V W AM+SGYSQ    ++AL LF +M S G+ PDE+ + ++L AC  L
Sbjct: 572 RTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQL 631

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            AL  GK +H   ++N +   N F+  +++DMYAK G +  +  +F ++  N K V+ +N
Sbjct: 632 SALGLGKEVHCFALKNSLMEDN-FVACSLMDMYAKSGFLGHSQRIFNRL--NGKEVASWN 688

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
            +I+G   HG G  ++ +F +M+    +PD  TF+ VL AC H GLV EG  +   M   
Sbjct: 689 VMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTL 748

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y ++P++EHY C++D+L R GRL+EA   I  MP + ++ IW +LL++   + + ++GE 
Sbjct: 749 YKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEK 808

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             +KLL LE +    Y+LLSN+ A   +W+  R VR+ M D  +QK  G S+IE  G ++
Sbjct: 809 FAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVY 868

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+A + S+P + EI  M   +  ++   GY P+   V+ +++E EK  ++  HSEK+A+
Sbjct: 869 SFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAI 928

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
            FG +N++   T+RI+KNLRIC DCH A K +S+  +REI++RD  RFH FKKG CSC D
Sbjct: 929 CFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGD 988

Query: 718 FW 719
           +W
Sbjct: 989 YW 990



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 244/488 (50%), Gaps = 41/488 (8%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           + +++LI+ +++ G       SR++F ++ N N+F WN L+ GY R++   EA+  +  +
Sbjct: 144 VLNTRLITMYSICGYP---LESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           +S     P+NFTFP ++ +C        G  +H   +K GL  DLF+ NA+I  Y   G+
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS--CIQPDAFTFVAMF 217
           ++ A ++F+    ++L+S+N+LI G+++      A   FR + +S   + PD  T V + 
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
             C+   +  +G   H +  K LG V   +++  A+I+MY+KCG ++ A  +F  +  +K
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVK-LGLV-HELMVCNALIDMYSKCGCLSEAAILFRKIE-NK 377

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           S  +W+SMI  Y+REG +     L  +M       W                      ME
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKM-------W----------------------ME 408

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
              +  +EVT++ +L AC+    L   + LH   + +  F     +  A I  YAKCGS+
Sbjct: 409 EELMEVNEVTILNLLPACLEESELLSLRALHGYSLRH-SFQYKELINNAFIAAYAKCGSL 467

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A  VF+ +  N K+VS +N++I G AQ+G    ++  + EM  +G+ PD  + V++L 
Sbjct: 468 VFAEHVFFGM--NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLL 525

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           AC   GL++ GK+    +L  G++        ++ L     +        + M  D NSV
Sbjct: 526 ACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMG-DKNSV 584

Query: 518 IWRALLAA 525
            W A+L+ 
Sbjct: 585 CWNAMLSG 592



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 153/323 (47%), Gaps = 44/323 (13%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D  +   LI  YSI GY   +  VF+  L ++L  +N L++GY + +    A+  F ++ 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 203 D-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             +  QPD FTF  +  ACT   D  +GK  H +  K +G +  ++ +  A+I +Y KCG
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVK-MGLI-MDLFVGNAMIALYGKCG 259

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREG-KIERARQLFDQMDQRDLVSWTAMISGY 320
            ++ A  +F  M   ++  +W+S+I G++  G  +E  R     ++  D           
Sbjct: 260 FLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD----------- 307

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                              G+ PD  TMV +L  C G G +D G  +H   ++ +     
Sbjct: 308 -------------------GLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK-LGLVHE 347

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + +  A+IDMY+KCG +  A  +F KI    K+V  +NS+I   ++ G    +  + R+M
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIEN--KSVVSWNSMIGAYSREGFVFETFDLLRKM 405

Query: 441 ----ELMGLKPDGVTFVTVLCAC 459
               ELM  + + VT + +L AC
Sbjct: 406 WMEEELM--EVNEVTILNLLPAC 426



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
            M  +L+ C     ++ G++L +    +  F  +  L T +I MY+ CG    +  VF +
Sbjct: 109 AMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDR 168

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLV 465
           +    K +  +N+++SG  ++ L + +I  F E+  +   +PD  TF  ++ AC+    +
Sbjct: 169 LLN--KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDI 226

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
             GK      +  G+   +     M+ L  + G LDEA  L   MP + N + W +L+
Sbjct: 227 HLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP-EQNLISWNSLI 283


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 330/542 (60%), Gaps = 10/542 (1%)

Query: 93  LVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152
           L LY S+L      P++ TFPF+L +CARL     G  +  +++  G   D+F+ NA +H
Sbjct: 106 LPLYCSLLRSA--RPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMH 163

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF-RKMQDSCIQPDAF 211
           F ++   +  A K+F+GS  RDLVS+NTLI GY +   P  AL +F R + D  + PD  
Sbjct: 164 FLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEV 223

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           T + + S   +L D  +G++ H  V  +   V   + L   V++MY KCG +  A+ VF 
Sbjct: 224 TMIGVVSGSAQLRDLELGRRLHGYVESH--GVRCTVRLMNVVMDMYIKCGDLERAKSVFE 281

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
            +   K+  +W++MI GY + G ++ AR++FD+M +RD+  W A+++GY Q     +AL 
Sbjct: 282 GID-KKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALR 340

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF  M+   + PD++TMV +L AC  LGAL+ G  +H  YI+      ++ L T ++DMY
Sbjct: 341 LFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHH-YIDRRRVSLSVMLGTNLVDMY 399

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           +KCG+I+ A+ VF +IP+  K    + ++ISGLA HG  + +I  F+ M  +GL+PD +T
Sbjct: 400 SKCGNIEKAIRVFKEIPE--KNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEIT 457

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+ VL AC H GLV+EG++FF  M++ Y ++ +M+HY CMVDLL R G LDEA  L+ +M
Sbjct: 458 FIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTM 517

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P + ++V+W AL  ACR+H N  +GE A  KL++L+P     YVLL+NM AE    ++A 
Sbjct: 518 PMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKAD 577

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           +VR +M   G++K PG S IE NG +H F+   KSH     I   L ++T++++    + 
Sbjct: 578 KVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAIYDCLHEITLQIEHTANMI 637

Query: 631 NT 632
           +T
Sbjct: 638 DT 639


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/524 (40%), Positives = 307/524 (58%), Gaps = 38/524 (7%)

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           +F +M +  + PD +TFV++  AC        G+Q H V  K       +  +   +INM
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVK--AGAAEHEYVAPTLINM 182

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           YA+CG                                 +  AR +FD+MD   +VS+ AM
Sbjct: 183 YAECG--------------------------------DVRAARVMFDRMDGECVVSYNAM 210

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           I+   +     +AL LF +M++ G+ P  VT+++VL AC  LGAL+ G+ +H  YI  + 
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHD-YIRKMR 269

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
               + + TA+IDMYAKCGS++ A+ VF  +    K    ++ ++   A HG G  +I++
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQA--WSVMMVAYANHGYGREAISM 327

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
           F EM+  G+KPD VTF+ VL ACSH G+V EG Q+F+SM  YGI   ++HYGC+ DLLAR
Sbjct: 328 FEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLAR 387

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G+L+ AY  I  +P    +++WR LL+AC  H +  +G+   +++L+L+  HG  YV+ 
Sbjct: 388 SGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIF 447

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELML 616
           SN+ A T RWEE   VRKLM + G+ K PG S IE +  +H F A   SHP ++E   M+
Sbjct: 448 SNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMV 507

Query: 617 KDMTMKLKSAGYVPNTVQVV-FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
            ++  +LK  GYVPNT  V   ++ EEEK T + YHSEKLA++FGL+N+    T+RI KN
Sbjct: 508 DEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKN 567

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+C DCH   KL+S ++ R I++RD  RFH F+ G CSC D+W
Sbjct: 568 LRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 52/482 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSG---LNHHISSSQLISFFALSGCKNG--LFRSRILF 65
           LLA L  C SL+   Q+H   V +G     H    ++L++     G +    L  +R +F
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 66  SQIDNPNIFIW-NTLMRGYSRSDSPQEALV----LYTSMLSKGIVSPNNFTFPFVLNSCA 120
            +I +P   IW NTL+RGY+R             ++  M+ +G V+P+ +TF  +L +CA
Sbjct: 91  DRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEG-VAPDTYTFVSLLKACA 149

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
              + + G Q H   +K G     ++   LI+ Y+  G +  A  +F+      +VSYN 
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I    +   P  AL LFR+MQ   ++P + T +++ SAC  L    +G+  H  + K  
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR 269

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             + S + + TA+I+MYAKCG +  A  VF  M  S+   AWS M+  Y           
Sbjct: 270 --LDSLVKVNTALIDMYAKCGSLEDAIGVFQDM-ESRDKQAWSVMMVAYANH-------- 318

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
                             GY +     +A+ +F +M+  G+ PD+VT + VL AC   G 
Sbjct: 319 ------------------GYGR-----EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGM 355

Query: 361 LDFGKRLHQQYIE-NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           +  G +      E  +V G   +    V D+ A+ G ++ A     ++P    T  L+ +
Sbjct: 356 VSEGLQYFDSMREYGIVSGIKHY--GCVTDLLARSGQLERAYKFIDELPIK-PTAILWRT 412

Query: 420 IISGLAQHGLGETSIAVF-REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY 478
           ++S  A HG  +    VF R +EL      G  +V     C++ G  EE     + M   
Sbjct: 413 LLSACAGHGDVDMGKRVFERILELD--DSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEK 470

Query: 479 GI 480
           G+
Sbjct: 471 GV 472



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 121/237 (51%), Gaps = 9/237 (3%)

Query: 298 ARQLFDQMDQRDLVSWTAMI-----SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           ARQ+FD++     V W   +      G    GG  +A  +F +M   G+ PD  T V++L
Sbjct: 86  ARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           +AC    A + G++ H   ++      + ++   +I+MYA+CG +  A  +F ++  + +
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGA-AEHEYVAPTLINMYAECGDVRAARVMFDRM--DGE 202

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +N++I+   +  L   ++ +FREM+  GLKP  VT ++VL AC+  G +E G+   
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + +    +   ++    ++D+ A+ G L++A G+ Q M    +   W  ++ A   H
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVAYANH 318


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 352/611 (57%), Gaps = 42/611 (6%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           +  F ++SC  +S   +   IH  +IK     D FI + L+  Y   GY  +A ++F+  
Sbjct: 67  SLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIG 229
             +DLVS+N+L++G +        L  F +M+ +S  QP+  T +++ SAC ++     G
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           K  H VV K                                  +GMS      +S+I+ Y
Sbjct: 184 KSLHGVVVK----------------------------------LGMSGKAKVVNSLINMY 209

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
            + G ++ A QLF++M  R LVSW +M+  ++  G   + ++LF  M+  GI+PD+ TMV
Sbjct: 210 GKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMV 269

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           A+LRAC   G     + +H  YI    F  +I + TA++++YAK G ++ +  +F +I  
Sbjct: 270 ALLRACTDTGLGRQAESIHA-YIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKD 328

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             +    + ++++G A H  G  +I +F  M   G++ D VTF  +L ACSH GLVEEGK
Sbjct: 329 RDRIA--WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 386

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           ++FE M   Y ++P+++HY CMVDLL R GRL++AY LI+SMP + +S +W ALL ACR+
Sbjct: 387 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 446

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           + N ++G+   ++LL L+P    +Y++LSN+ +    W +A +VR LM +  + + PG S
Sbjct: 447 YGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCS 506

Query: 589 YIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648
           +IEH   +HRF+   + HP++ EI   L+++  K++ AG  P T  V+ D+DEE K  ++
Sbjct: 507 FIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMI 566

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           + HSEKLA+AFGL+ + S   + ITKNLRICGDCH   K  S + +R I++RD+ RFH F
Sbjct: 567 NKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHF 626

Query: 709 KKGNCSCMDFW 719
             G CSC D+W
Sbjct: 627 ADGLCSCRDYW 637


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/640 (35%), Positives = 350/640 (54%), Gaps = 40/640 (6%)

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           +LF +I + +   +NTL+ GY +     EA+ L+  M   G   P++FTF  VL +   L
Sbjct: 199 VLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSG-HKPSDFTFSGVLKAVVGL 257

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
             F  G Q+H   +  G   D  + N ++HFYS    +     +F      D VSYN +I
Sbjct: 258 HDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVI 317

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
           + Y+Q ++   +L LFR+MQ        F F  M S    L+  ++G+Q H      +  
Sbjct: 318 SSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAI--VAT 375

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S + +  ++++MYAKC + + AE +F ++                             
Sbjct: 376 ADSILHVGNSLVDMYAKCEMFDEAELIFKSL----------------------------- 406

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
               QR  VSWTA+ISGY Q G     L+LF KM    +  D+ T   VL+A  G  +L 
Sbjct: 407 ---SQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLL 463

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK+LH   I +     N+F  + ++DMYAKCGSI  A+ VF ++P   +    +N++IS
Sbjct: 464 LGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD--RNAVSWNALIS 520

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIK 481
             A +G GE +I  F +M   GL+PD V+ + VL ACSH G VE+G +FF++M   YGI 
Sbjct: 521 AYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGIT 580

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+ +HY CM+DLL R+GR  EA  L+  MP++ + ++W ++L ACR+++N  + E A ++
Sbjct: 581 PKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQ 640

Query: 542 LLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
           L  +E     A YV +SN+ A   +WE  R V+K M + GI+K P +S++E N  +H F 
Sbjct: 641 LFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFS 700

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           ++ ++HP   EI   + ++T +++  GY P+T  VV D+DE+ K   + YHSE+LA+AF 
Sbjct: 701 SNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFA 760

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
           LI++     I + KNLR C DCH A KL+S+I +R I  +
Sbjct: 761 LISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 6/253 (2%)

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G ++ A +V+  M   K+T + ++MISGY + G +  AR LFD M  R +V+WT ++  Y
Sbjct: 58  GQVSAALKVYDEMP-HKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWY 116

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +    F +A +LF +M      PD VT   +L  C      +   ++H  +   + F  N
Sbjct: 117 AGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVH-AFAVKLGFDTN 175

Query: 381 IFLTT--AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
           +FLT    ++  Y +   +D A  +F +I    K    FN++I+G  + GL   +I +F 
Sbjct: 176 LFLTVCNVLLKSYCEVRRLDLACVLFEEILD--KDSVTFNTLITGYEKDGLYTEAIHLFL 233

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498
           +M   G KP   TF  VL A         G+Q     +  G          ++   ++  
Sbjct: 234 KMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHD 293

Query: 499 RLDEAYGLIQSMP 511
           R+ E   L   MP
Sbjct: 294 RVLETRNLFNEMP 306


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 364/658 (55%), Gaps = 45/658 (6%)

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           FS+I   N + +  +M  Y  +D  ++AL L+   +++ +   N  T+  VL SCA L  
Sbjct: 40  FSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEEL-QQNQATYVTVLKSCAHLGE 98

Query: 125 --FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
              + G +IH H I  G   DL ++N+LIH Y+  G    A  VFE    ++L+SY ++I
Sbjct: 99  DYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMI 158

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             Y    +   A  L++KM    I PD + + A  + C  +   R G+  H      LG 
Sbjct: 159 QAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTI---REGEAIHV----KLG- 210

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
              N   +T V +                           ++++  Y R G+I  A+ +F
Sbjct: 211 ---NHERRTPVCS---------------------------NALVGMYGRFGRIASAKWVF 240

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           D +  +DL S+  MI+ +++    S+A+ L+ +ME   + P+  T  +VL AC  LGAL 
Sbjct: 241 DGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALT 300

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            GK +H++ ++      ++   TA+++MYAKCGS   A +VF      LK V  + S++S
Sbjct: 301 EGKEIHKK-VKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDC--GLKNVFTWTSLMS 357

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIK 481
             +Q G  +  +  ++ M   G+ PD VTF  +  ACSH GL +EG  +F +M  ++ I 
Sbjct: 358 AYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIV 417

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P   HY CM+DLL R GRL EA  L+++MPY  + V W  LL+AC+++ + KIG  A ++
Sbjct: 418 PLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKR 477

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           + +L P     Y+L+ NM A+  +W +  +V+K++   G+ KPPG S IE    +H F+ 
Sbjct: 478 ITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVC 537

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
              +HP  +EI   L+++  +L  AGY P+T +V+ DV+EE K  ++ +HSE++AL  GL
Sbjct: 538 GDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGL 597

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + S +  T+ I KNLRIC DCH  FKL+S++  R+++VRD+ RFH+F++G+CSC D+W
Sbjct: 598 LTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 205/440 (46%), Gaps = 62/440 (14%)

Query: 2   KRLVLEHSSLLALLESCKSL-----KQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCK 55
           + L    ++ + +L+SC  L     +   +IH   +  G     +  + LI  +A    K
Sbjct: 77  EELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYA----K 132

Query: 56  NGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
            G F+ +  +F +++  N+  + ++++ Y+ +    EA  LY  MLS+GI+ P+ + +  
Sbjct: 133 CGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIM-PDIYAYAA 191

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFG--LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
            L  C    + + G  IH   +K G          NAL+  Y  FG I +A  VF+G   
Sbjct: 192 ALAVC---PTIREGEAIH---VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRY 245

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           +DL SYN +I  +A+  +   A+ L+ +M+   ++P+ +TF ++  AC++L     GK+ 
Sbjct: 246 KDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEI 305

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H  V    G   +++   TA++NMYAKCG  + A  VF+  G+ K+   W+S++S Y++ 
Sbjct: 306 HKKV--KGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGL-KNVFTWTSLMSAYSQP 362

Query: 293 GKIERARQLFDQMDQR----DLVSWTAMISGYSQVG-----------------------G 325
           G+ +   + + +M+      D V++TA+ +  S  G                        
Sbjct: 363 GQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPH 422

Query: 326 FSQALELFGK----------MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           ++  ++L G+          + ++   PD VT   +L AC   G L  G R +++  E  
Sbjct: 423 YTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELN 482

Query: 376 VFGRNIFLTTAVIDMYAKCG 395
                 +L     +MYAK G
Sbjct: 483 PPDSGPYLLMG--NMYAKAG 500



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 12/250 (4%)

Query: 267 ERVF-STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           ER+  + +   K T   + ++  Y R   I+ A   F ++ +++  S+  M+  Y +   
Sbjct: 4   ERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDL 63

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA--LDFGKRLHQQYIENVVFGRNIFL 383
             +AL+LF K  +  +  ++ T V VL++C  LG   L+ GK +H+  I    FG ++ +
Sbjct: 64  HKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQ-GFGTDLVV 122

Query: 384 TTAVIDMYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
             ++I MYAKCGS   A  VF K+ PKNL +   + S+I           +  ++++M  
Sbjct: 123 QNSLIHMYAKCGSFKFAAGVFEKMEPKNLIS---YTSMIQAYTHTAKHVEAYELYKKMLS 179

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502
            G+ PD   +   L  C     + EG+     + N+  +  +     +V +  R GR+  
Sbjct: 180 EGIMPDIYAYAAALAVCP---TIREGEAIHVKLGNHERRTPVCS-NALVGMYGRFGRIAS 235

Query: 503 AYGLIQSMPY 512
           A  +   + Y
Sbjct: 236 AKWVFDGIRY 245


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 331/544 (60%), Gaps = 31/544 (5%)

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS--NMLLKTAVINMY 257
           K+ D  ++PD  + V +  AC  +     GK  H +  ++    GS  ++ +  A+++MY
Sbjct: 3   KLGDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRS----GSFEDLFVGNALVDMY 58

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----VSW 313
           AKCG+++ A +VF  +   K   +W++M++GY++ G+ E A  LF++M + ++    VSW
Sbjct: 59  AKCGMVDEASKVFDRI-KEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSW 117

Query: 314 TAMISGYSQVGGFSQALELFGKMESLG-----------------IHPDEVTMVAVLRACV 356
           +A+I+ ++Q G   + L++F +M+                    + P+  T+   L AC 
Sbjct: 118 SAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACA 177

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            L AL  G+++H   + N      +++   +IDMYAK G ID A  VF  + +  K    
Sbjct: 178 RLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQ--KNFVS 235

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM- 475
           + S+++G   HG G+ ++ VF EM  +GL+PDGVT + VL ACSH G++++G +FF SM 
Sbjct: 236 WTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMS 295

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             +G+ P  EHY CMVDLL R GRL+EA  LI+ M  + +S++W ALL+ CR+H N ++G
Sbjct: 296 KEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELG 355

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           E A ++LL+L  ++   Y LLSN+ A   RW++  +VR LM +SGI+K PG S+++    
Sbjct: 356 EHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKG 415

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
              F  + K+HPQ+K+I  +L+ +T ++K  GYVP T   + DVD+EEK  ++  HSEKL
Sbjct: 416 TTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKL 475

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           ALA+G++ S     IRITKNLR+CGDCH A   +S I   EI++RD+ RFH FKKG+CSC
Sbjct: 476 ALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSC 535

Query: 716 MDFW 719
             +W
Sbjct: 536 SGYW 539



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 167/391 (42%), Gaps = 93/391 (23%)

Query: 107 PNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKV 166
           P+  +   VL +CA + ++  G  +H   ++ G   DLF+ NAL+  Y+  G ++ A KV
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 167 FEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM------------------------- 201
           F+    +D+VS+N ++NGY+Q+     AL LF KM                         
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 202 ---------------------------QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
                                      QD  ++P+ FT      AC  L   R+G+Q HA
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            + +N     + + +   +I+MYAK G +++A  VF  +   K+  +W+S+++GY   G+
Sbjct: 191 YILRN-HFDSAFLYVANCLIDMYAKSGDIDVARFVFDNL-KQKNFVSWTSLMTGYGMHGR 248

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            + A                               LE+F +M  +G+ PD VT++ VL A
Sbjct: 249 GKEA-------------------------------LEVFDEMRRVGLQPDGVTLLVVLYA 277

Query: 355 CVGLGALDFGKRLHQQYIEN--VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           C   G +D G        +   V+ G+  +    ++D+  + G ++ A+ +   +     
Sbjct: 278 CSHSGMIDQGIEFFNSMSKEFGVIPGQEHY--ACMVDLLGRAGRLNEAMELIEGMQMEPS 335

Query: 413 TVSLFNSIISGLAQHG---LGETSIAVFREM 440
           ++ ++ +++SG   H    LGE +     E+
Sbjct: 336 SI-VWVALLSGCRIHANVELGEHAAKQLLEL 365



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 164/393 (41%), Gaps = 67/393 (17%)

Query: 10  SLLALLESCKSLKQALQ---IHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILF 65
           SL+ +L +C S+   L    +HG  V SG        + L+  +A  G  +    +  +F
Sbjct: 15  SLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVD---EASKVF 71

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK----------------------- 102
            +I   ++  WN ++ GYS+    ++AL L+  M  +                       
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131

Query: 103 ----------------------------GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
                                       G+V PN FT    L +CARL++ + G QIH +
Sbjct: 132 ETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAY 191

Query: 135 IIK--FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
           I++  F   F L++ N LI  Y+  G I+ A  VF+    ++ VS+ +L+ GY       
Sbjct: 192 ILRNHFDSAF-LYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            AL +F +M+   +QPD  T + +  AC+       G +F   + K  G +         
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY-AC 309

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLFDQMDQR 308
           ++++  + G +N A  +   M M  S+  W +++SG      +E     A+QL +   + 
Sbjct: 310 MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEN 369

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           D  S+T + + Y+    +     +   M++ GI
Sbjct: 370 D-GSYTLLSNIYANARRWKDVARVRSLMKNSGI 401


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/627 (35%), Positives = 356/627 (56%), Gaps = 25/627 (3%)

Query: 104 IVSPNNFTFPFVLNSCA-------RLSSFKSGCQIHCH---IIKFGLEFDLFIRNALIHF 153
           +VSPNN T    +++ +        ++SF   C +        K  +   +     L  +
Sbjct: 55  LVSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY 114

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
             + G +  AH++F+     D VSYN ++  Y +      AL  F KM       D  ++
Sbjct: 115 TKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMP----VKDIASW 170

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             + S   +    +      +V+ +  G   S      A+I+ Y + G +  AE ++  +
Sbjct: 171 NTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS------AMISGYVEHGDLEAAEELYKNV 224

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           GM KS    ++M++GY + GK+E A ++F +M  ++LV+W +MI+GY +       L++F
Sbjct: 225 GM-KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVF 283

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M    + P+ +++ +VL  C  L AL  G+++HQ  +      ++    T++I MY K
Sbjct: 284 KTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQ-LVSKSPLSKDTTACTSLISMYCK 342

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG +D+A  +F ++P+  K V  +N++ISG AQHG G  ++ +F +M    +KPD +TFV
Sbjct: 343 CGDLDSAWKLFLEMPR--KDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFV 400

Query: 454 TVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            V+ AC+H G V+ G Q+F+SM   +GI+ +  HY C++DLL R GRLDEA  LI+ MP+
Sbjct: 401 AVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPF 460

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
             ++ I+  LL ACR+H+N  + E A + LL+L+P     YV L+N+ A T +W++  +V
Sbjct: 461 TPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKV 520

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           RK+M +  + K PG+S+IE     H F +S + HP+   I   L ++  K+K AGYVP+ 
Sbjct: 521 RKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDL 580

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
              + DV+EE KE ++ +HSEKLA+AFGL+ +     IR+ KNLR+CGDCH A K +S I
Sbjct: 581 EFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAI 640

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +REI+VRD  RFH F+ G CSC D+W
Sbjct: 641 EKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 177/445 (39%), Gaps = 91/445 (20%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYS--------------------------------RSDS 88
           +R +F ++       WNT++ GY+                                RS  
Sbjct: 92  ARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYG 151

Query: 89  PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR-------LSSFKSGCQIHCHIIKFGLE 141
            + AL  +  M  K I S N     F  N   +       +   K+G      I  +   
Sbjct: 152 VKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEH 211

Query: 142 FDL---------------FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            DL                +  A++  Y  FG +  A ++F+    ++LV++N++I GY 
Sbjct: 212 GDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +       L +F+ M +S ++P+  +  ++   C+ L+   +G+Q H +V K+   +  +
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS--PLSKD 329

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
               T++I+MY KCG ++ A ++F  M   K    W++MISGY + G   +A  LFD+M 
Sbjct: 330 TTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNAMISGYAQHGAGRKALHLFDKMR 388

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                      G M+     PD +T VAV+ AC   G +D G +
Sbjct: 389 N--------------------------GTMK-----PDWITFVAVILACNHAGFVDLGVQ 417

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             +   +           T VID+  + G +D A+S+  ++P      +++ +++     
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFT-PHAAIYGTLLGACRI 476

Query: 427 HGLGETSIAVFREMELMGLKPDGVT 451
           H      +A F    L+ L P   T
Sbjct: 477 H--KNLDLAEFAARNLLNLDPTSAT 499



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNG-LFRSRI 63
           L  SS+L    +  +L    Q+H  +  S L+   ++ + LIS +    CK G L  +  
Sbjct: 296 LSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMY----CKCGDLDSAWK 351

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WN ++ GY++  + ++AL L+  M   G + P+  TF  V+ +C    
Sbjct: 352 LFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKM-RNGTMKPDWITFVAVILACNHAG 410

Query: 124 SFKSGCQIHCHIIK-FGLE 141
               G Q    + K FG+E
Sbjct: 411 FVDLGVQYFKSMKKEFGIE 429


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 351/608 (57%), Gaps = 42/608 (6%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
           F ++SC  +S   +   IH  +IK     D FI + L+  Y   GY  +A ++F+    +
Sbjct: 127 FAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           DLVS+N+L++G +        L  F +M+ +S  QP+  T +++ SAC ++     GK  
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           H VV K                                  +GMS      +S+I+ Y + 
Sbjct: 244 HGVVVK----------------------------------LGMSGKAKVVNSLINMYGKL 269

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G ++ A QLF++M  R LVSW +M+  ++  G   + ++LF  M+  GI+PD+ TMVA+L
Sbjct: 270 GFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL 329

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
           RAC   G     + +H  YI    F  +I + TA++++YAK G ++ +  +F +I    +
Sbjct: 330 RACTDTGLGRQAESIHA-YIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 388

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
               + ++++G A H  G  +I +F  M   G++ D VTF  +L ACSH GLVEEGK++F
Sbjct: 389 IA--WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYF 446

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           E M   Y ++P+++HY CMVDLL R GRL++AY LI+SMP + +S +W ALL ACR++ N
Sbjct: 447 EIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGN 506

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++G+   ++LL L+P    +Y++LSN+ +    W +A +VR LM +  + + PG S+IE
Sbjct: 507 VELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 566

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
           H   +HRF+   + HP++ EI   L+++  K++ AG  P T  V+ D+DEE K  +++ H
Sbjct: 567 HGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKH 626

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLA+AFGL+ + S   + ITKNLRICGDCH   K  S + +R I++RD+ RFH F  G
Sbjct: 627 SEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADG 686

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 687 LCSCRDYW 694



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 18/217 (8%)

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           ++V  + +C    ++ +   +H + I+++ +  + F+   ++ MY K G  + A  +F +
Sbjct: 124 SLVFAISSCT---SVSYCSAIHARVIKSLNYS-DGFIGDRLVSMYFKLGYDEDAQRLFDE 179

Query: 407 IPKNLKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465
           +P   K +  +NS++SGL+  G LG    A  R     G +P+ VT ++V+ AC+  G +
Sbjct: 180 MPN--KDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGAL 237

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           +EGK     ++  G+  + +    ++++  + G LD A  L + MP  +  V W +++  
Sbjct: 238 DEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS-LVSWNSMVV- 295

Query: 526 CRLHRNAKIGEIAGQKLLDL------EPDHGAHYVLL 556
             +H +    E  G  L +L       PD      LL
Sbjct: 296 --IHNHNGYAE-KGMDLFNLMKRAGINPDQATMVALL 329


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/715 (31%), Positives = 391/715 (54%), Gaps = 45/715 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           ++LL L  +   L     +H Q+   GL +  I+S+ L + +    C+     +R +F +
Sbjct: 20  TALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMY--FKCRRPA-DARRVFDR 76

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML-SKGIVSPNNFTFPFVLNSCARLSSFK 126
           + + +   WN ++ GY+R+  P  A+     M   +G   P++ T   VL +CA   +  
Sbjct: 77  MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALH 136

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           +  ++H   ++ GL+  + +  A++  Y   G +  A  VF+    R+ VS+N +I+GYA
Sbjct: 137 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                  A+ LF +M    +     + +A   AC EL      ++ H ++ +        
Sbjct: 197 DNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVR-------- 248

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM- 305
                                     +G+S + +  +++I+ Y +  + + A Q+F+++ 
Sbjct: 249 --------------------------VGLSSNVSVTNALITTYAKCKRADLAAQVFNELG 282

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
           +++  +SW AMI G++Q      A  LF +M+   + PD  T+V+V+ A   +      +
Sbjct: 283 NKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQAR 342

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
            +H   I +    +++++ TA+IDMY+KCG +  A  +F       + V  +N++I G  
Sbjct: 343 WIHGYSIRHQ-LDQDVYVLTALIDMYSKCGRVSIARRLFDSARD--RHVITWNAMIHGYG 399

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQM 484
            HG G+ ++ +F EM+  G  P+  TF++VL ACSH GLV+EG+++F SM  +YG++P M
Sbjct: 400 SHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGM 459

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHYG MVDLL R G+LDEA+  I++MP +    ++ A+L AC+LH+N ++ E + Q + +
Sbjct: 460 EHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFE 519

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           L P+ G ++VLL+N+ A    W++  +VR  M+  G+QK PGWS I+    +H F +   
Sbjct: 520 LGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGST 579

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINS 664
           +H   K+I   L  +  ++K  GYVP+T   + DV+++ K  +++ HSEKLA+A+GLI +
Sbjct: 580 NHQHAKDIYARLAKLIEEIKDMGYVPDT-DSIHDVEDDVKAQLLNTHSEKLAIAYGLIRT 638

Query: 665 RSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
               TI+I KNLR+C DCH A KL+S +  REI++RD  RFH FK G CSC D+W
Sbjct: 639 APGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 195/421 (46%), Gaps = 51/421 (12%)

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TF  +L  CA  +   +G  +H  +   GL  +     AL + Y       +A +VF+  
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQ--DSCIQPDAFTFVAMFSACTELNDPRI 228
            +RD V++N ++ GYA+   P  A+    +MQ  +   +PD+ T V++  AC +      
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 229 GKQFHAVVYKNLGCVGSNMLLK--TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
            ++ HA   +     G + L+   TAV++ Y KCG +  A  VF  M + +++ +W++MI
Sbjct: 138 CREVHAFALR----AGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPV-RNSVSWNAMI 192

Query: 287 SGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346
            GY   G                                 ++A+ LF +M   G+   + 
Sbjct: 193 DGYADNGNA-------------------------------TEAMALFWRMVQEGVDVTDA 221

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
           +++A L+AC  LG LD  +R+H+  +  V    N+ +T A+I  YAKC   D A  VF +
Sbjct: 222 SVLAALQACGELGYLDEVRRVHELLVR-VGLSSNVSVTNALITTYAKCKRADLAAQVFNE 280

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466
           +  N KT   +N++I G  Q+   E +  +F  M+L  ++PD  T V+V+ A +      
Sbjct: 281 L-GNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPL 339

Query: 467 EGKQFFESMLNYGIKPQMEH----YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           + +        Y I+ Q++        ++D+ ++ GR+  A  L  S   D + + W A+
Sbjct: 340 QARWIH----GYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDS-ARDRHVITWNAM 394

Query: 523 L 523
           +
Sbjct: 395 I 395


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/464 (43%), Positives = 302/464 (65%), Gaps = 9/464 (1%)

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREG--KIERARQLFDQMDQRDLVSWTAMIS 318
           G+      + S +G+   T   +++I  Y + G   +  AR+LFD MD RD+VSW  MI+
Sbjct: 209 GITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIA 267

Query: 319 GYSQVGGFSQALELFGKMESLG--IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
            Y+Q G  ++AL L+ KM  +G  +  + VT+ AVL AC   GA+  GKR+H Q +  + 
Sbjct: 268 LYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVR-MG 326

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
              N+++ T+V+DMY+KCG ++ A   F KI    K +  ++++I+G   HG G+ ++ V
Sbjct: 327 LEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKG--KNILSWSAMIAGYGMHGYGQEALHV 384

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLA 495
           F +M   GLKP+ +TF+TVL ACSH GL+ EG+ ++ +M   +GI+P +EHYGCMVDLL 
Sbjct: 385 FTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLG 444

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G LDEAYGLI+ M    ++ +W ALL+ACR+++N ++ +I  ++L +L+  +  +YVL
Sbjct: 445 RAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVL 504

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LSN+ AE   W+E  ++R L+   GI+KPPG+S +E  G  H F    KSHPQ KEI   
Sbjct: 505 LSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAY 564

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           L+ +  ++  AGYVPNT  V+ D+D EE+E+++  HSEKLA+AF L+NS     I + KN
Sbjct: 565 LEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKN 624

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+C DCH A K+++++  REI++RD  RFH FK G CSC D+W
Sbjct: 625 LRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 164/352 (46%), Gaps = 10/352 (2%)

Query: 27  IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
           IH  +   GL+     +  I      G  + L  +R LF  +D  ++  WNT++  Y+++
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIALYAQN 272

Query: 87  DSPQEALVLYTSML-SKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLF 145
               EAL LY+ ML   G V  N  T   VL +CA   + ++G +IH  +++ GLE +++
Sbjct: 273 GLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVY 332

Query: 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC 205
           +  +++  YS  G +  A K F+    ++++S++ +I GY        AL +F  M+ S 
Sbjct: 333 VGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSG 392

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           ++P+  TF+ + +AC+       G+ ++  +    G +   +     ++++  + G ++ 
Sbjct: 393 LKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFG-IEPGVEHYGCMVDLLGRAGCLDE 451

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERAR----QLFDQMDQRDLVSWTAMISGYS 321
           A  +   M +    A W +++S       +E A+    +LF ++D  +   +  + + Y+
Sbjct: 452 AYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLF-ELDATNSGYYVLLSNIYA 510

Query: 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           + G + +   +   +++ GI          L+    L     G + H QY E
Sbjct: 511 EAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHL--FYVGDKSHPQYKE 560


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/436 (44%), Positives = 288/436 (66%), Gaps = 4/436 (0%)

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           M++G+ R+G++   ++LFD+M +RD++SW  M+  Y   G   +ALE F +M   G+ PD
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           E T+V +L A   L  L+ G+ +H   I+++     I + TA++DMYAKCG I+ +  +F
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHS-IIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLF 119

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
             +P+  + VS +N +I GLA HGLG+ ++ +F      GL P  VTFV VL ACS  GL
Sbjct: 120 ENMPR--RDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGL 177

Query: 465 VEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+EG+ +F+ M + YGI+P+MEHYGCMVDLL R G + EA  +I+SM    + V+W  +L
Sbjct: 178 VKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVL 237

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            ACR+H  A++GE  G +L++L+P +  HYV L+++ A + +WE+  +VR+LM +    K
Sbjct: 238 CACRIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSK 297

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
             GWS IE  G +HRF+A  + H Q+ EI+ ML+ +  +L +AGYVPN   V+ D+ EEE
Sbjct: 298 VAGWSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEE 357

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  +  HSE+LA+AFGL+ +     IRI KNLR+C DCH   K++S ++ REI+VRD  
Sbjct: 358 KENAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGS 417

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK+G CSC+D+W
Sbjct: 418 RFHHFKEGKCSCLDYW 433



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 2/246 (0%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNT++  Y  +    EAL  +  M   G+V P+  T   +L++ A+L 
Sbjct: 17  LFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLV-PDEATLVTMLSASAQLC 75

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
             + G  IH  I    L   + I  AL+  Y+  G I  +  +FE    RD+ ++N +I 
Sbjct: 76  LLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMIC 135

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A       AL LF +  +  + P   TFV + +AC+     + G+ +  ++  + G +
Sbjct: 136 GLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYG-I 194

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
              M     ++++  + GL+  A +V  +M +S     W+ ++      G  E   ++ +
Sbjct: 195 EPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIGN 254

Query: 304 QMDQRD 309
           ++ + D
Sbjct: 255 RLIELD 260



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 19/200 (9%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHS-----GLNHHIS-SSQLISFFALSGCKNG 57
           LV + ++L+ +L +   L   L  HGQ +HS      L   IS  + L+  +A  GC   
Sbjct: 57  LVPDEATLVTMLSASAQL--CLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGC--- 111

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
           + +SR+LF  +   ++  WN ++ G +     ++AL L+   L++G+  P N TF  VLN
Sbjct: 112 IEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGL-HPMNVTFVGVLN 170

Query: 118 SCARLSSFKSGCQ-IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDL 175
           +C+R    K G          +G+E ++     ++      G +  A KV E  +++ D 
Sbjct: 171 ACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDP 230

Query: 176 VSYNTL-----INGYAQVKE 190
           V +  +     I+G A++ E
Sbjct: 231 VLWAMVLCACRIHGLAELGE 250


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/729 (34%), Positives = 403/729 (55%), Gaps = 61/729 (8%)

Query: 6   LEHSSLLALLESC--KSL-KQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS- 61
           +E S    LL+ C  ++L  +A  IHG IV +G +  +    +++F      K G+  S 
Sbjct: 62  IESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLF---VMTFLVNVYSKCGVMESA 118

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             +F  +   N+  W TL+ GY ++  P  AL L+  ML  G   P+N+T   VLN+C+ 
Sbjct: 119 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAG-AYPSNYTLGIVLNACSS 177

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L S + G Q+H ++IK+ ++FD  I N+L  FYS F  +  A K F+    +D++S+ ++
Sbjct: 178 LQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSV 237

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+      +   +L  F  M    ++P+ +T  ++ SAC  +    +G Q H++  K LG
Sbjct: 238 ISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK-LG 296

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
             GS++L+K +++ +Y KCG                    W            +  A++L
Sbjct: 297 -YGSSILIKNSIMYLYLKCG--------------------W------------LIEAQKL 323

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGF-----------SQALELFGKMESLGIHPDEVTMVA 350
           F+ M+  +LV+W AMI+G++++              S AL +F K+   G+ PD  T  +
Sbjct: 324 FEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSS 383

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL  C  L AL+ G+++H Q I++ V   ++ + TA++ MY KCGSID A   F ++P  
Sbjct: 384 VLSVCSNLVALEQGEQIHGQIIKSGVLA-DVVVGTALVSMYNKCGSIDKASKAFLEMPS- 441

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            +T+  + S+I+G A+HGL + ++ +F +M L+G+KP+ VTFV VL ACSH GL +E   
Sbjct: 442 -RTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALY 500

Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +FE M   Y IKP M+H+ C++D+  R GR++EA+ ++  M ++ N  IW  L+A CR H
Sbjct: 501 YFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSH 560

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
             + +G  A ++LL L+P     YV L NM     RW++  +VRKLM +  + K   WS+
Sbjct: 561 GKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSW 620

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           I     ++ F  + KSH Q+ E+  +L+ +  ++K+ GY P    V     EE +E V+S
Sbjct: 621 ISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEP-IEDVEVIEKEENEERVLS 679

Query: 650 ---YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
               HSEKLA+AFGL+N  +   IR+ K++ +C DCH   + +S +  REI++RD+ + H
Sbjct: 680 STVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLH 739

Query: 707 LFKKGNCSC 715
            F  G CSC
Sbjct: 740 KFLNGYCSC 748



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLF 59
           MK  +   SS+L++  +  +L+Q  QIHGQI+ SG L   +  + L+S +   G    + 
Sbjct: 374 MKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCG---SID 430

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++   F ++ +  +  W +++ G++R    Q+AL L+  M   GI  PN  TF  VL++C
Sbjct: 431 KASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGI-KPNQVTFVGVLSAC 489

Query: 120 A 120
           +
Sbjct: 490 S 490


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/722 (33%), Positives = 389/722 (53%), Gaps = 46/722 (6%)

Query: 4   LVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           L+ + ++++ LL  C    ++   + IHG  V  GL H +   + LI  ++  GC   L 
Sbjct: 309 LIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGC---LS 365

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNS 118
            + ILF +I+N ++  WN+++  YSR     E   L   M + + ++  N  T   +L +
Sbjct: 366 EAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA 425

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           C   S   S   +H + ++   ++   I NA I  Y+  G +  A  VF G   + + S+
Sbjct: 426 CLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSW 485

Query: 179 NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           N +I G+AQ  +P  AL  + +M    I PD F+ V++  AC  L   + GK+ H  V +
Sbjct: 486 NAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR 545

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           N                                  G+  ++    S++S Y    K    
Sbjct: 546 N----------------------------------GLEMNSFVAVSLLSLYFHCSKPFYG 571

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
           R  F+ M  ++ V W AM+SGYSQ    ++AL LF +M S G+ PDE+ + ++L AC  L
Sbjct: 572 RTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQL 631

Query: 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            AL  GK +H   ++N +   N F+  +++DMYAK G +  +  +F ++  N K V+ +N
Sbjct: 632 SALGLGKEVHCFALKNSLMEDN-FVACSLMDMYAKSGFLGHSQRIFNRL--NGKEVASWN 688

Query: 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN- 477
            +I+G   HG G  ++ +F +M+    +PD  TF+ VL AC H GLV EG  +   M   
Sbjct: 689 VMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTL 748

Query: 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537
           Y ++P++EHY C++D+L R GRL+EA   I  MP + ++ IW +LL++   + + ++GE 
Sbjct: 749 YKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEK 808

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
             +KLL LE +    Y+LLSN+ A   +W+  R VR+ M D  +QK  G S+IE  G ++
Sbjct: 809 FAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVY 868

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+A + S+P + EI  M   +  ++   GY P+   V+ +++E EK  ++  HSEK+A+
Sbjct: 869 SFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAI 928

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
            FG +N++   T+RI+KNLRIC DCH A K +S+  +REI++RD  RFH FKKG CSC D
Sbjct: 929 CFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGD 988

Query: 718 FW 719
           +W
Sbjct: 989 YW 990



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 245/488 (50%), Gaps = 41/488 (8%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           + +++LI+ +++ G       SR++F ++ N N+F WN L+ GY R++   EA+  +  +
Sbjct: 144 VLNTRLITMYSICGYP---LESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
           +S     P+NFTFP ++ +C        G  +H   +K GL  DLF+ NA+I  Y   G+
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS--CIQPDAFTFVAMF 217
           ++ A ++F+    ++L+S+N+LI G+++      A   FR + +S   + PD  T V + 
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
             C+   +  +G   H +  K LG V   +++  A+I+MY+KCG ++ A  +F  +  +K
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVK-LGLV-HELMVCNALIDMYSKCGCLSEAAILFRKIE-NK 377

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
           S  +W+SMI  Y+REG +     L  +M       W                      ME
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKM-------W----------------------ME 408

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397
              +  +EVT++ +L AC+    L   + LH   + +  F     +  A I  YAKCGS+
Sbjct: 409 EELMEVNEVTILNLLPACLEESELLSLRALHGYSLRH-SFQYKELINNAFIAAYAKCGSL 467

Query: 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457
             A  VF+ +  N K+VS +N++I G AQ+G    ++  + EM  +G+ PD  + V++L 
Sbjct: 468 VFAEHVFFGM--NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLL 525

Query: 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           AC   GL++ GK+    +L  G++        ++ L     +        ++M  D NSV
Sbjct: 526 ACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMG-DKNSV 584

Query: 518 IWRALLAA 525
            W A+L+ 
Sbjct: 585 CWNAMLSG 592



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 153/323 (47%), Gaps = 44/323 (13%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D  +   LI  YSI GY   +  VF+  L ++L  +N L++GY + +    A+  F ++ 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 203 D-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261
             +  QPD FTF  +  ACT   D  +GK  H +  K +G +  ++ +  A+I +Y KCG
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVK-MGLI-MDLFVGNAMIALYGKCG 259

Query: 262 LMNMAERVFSTMGMSKSTAAWSSMISGYTREG-KIERARQLFDQMDQRDLVSWTAMISGY 320
            ++ A  +F  M   ++  +W+S+I G++  G  +E  R     ++  D           
Sbjct: 260 FLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD----------- 307

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                              G+ PD  TMV +L  C G G +D G  +H   ++ +     
Sbjct: 308 -------------------GLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK-LGLVHE 347

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           + +  A+IDMY+KCG +  A  +F KI    K+V  +NS+I   ++ G    +  + R+M
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIEN--KSVVSWNSMIGAYSREGFVFETFDLLRKM 405

Query: 441 ----ELMGLKPDGVTFVTVLCAC 459
               ELM  + + VT + +L AC
Sbjct: 406 WMEEELM--EVNEVTILNLLPAC 426



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406
            M  +L+ C     ++ G++L +    +  F  +  L T +I MY+ CG    +  VF +
Sbjct: 109 AMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDR 168

Query: 407 IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM-ELMGLKPDGVTFVTVLCACSHGGLV 465
           +    K +  +N+++SG  ++ L + +I  F E+  +   +PD  TF  ++ AC+    +
Sbjct: 169 LLN--KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDI 226

Query: 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
             GK      +  G+   +     M+ L  + G LDEA  L   MP + N + W +L+
Sbjct: 227 HLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP-EQNLISWNSLI 283


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/649 (35%), Positives = 367/649 (56%), Gaps = 48/649 (7%)

Query: 76  WNT-LMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVL--NSCARLSSFKSGCQI 131
           WN+ ++  +      Q  L+L+ S  L +   +P       ++  NSC  +S+ +   +I
Sbjct: 5   WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCR---EI 61

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  + K  L  D FI + L+  Y+  GY  +A K+F+    +DLVS+N+LI+G+++    
Sbjct: 62  HARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHM 121

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
               +   K + S ++P+  T ++M SAC+   D   GK  H    K    VG  + +K 
Sbjct: 122 SLTAFYTMKFEMS-VKPNEVTILSMISACSGALDA--GKYIHGFGIK----VGGTLEVKV 174

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A                              +S+I+ Y + G +  A +LF+ +   + V
Sbjct: 175 A------------------------------NSLINMYGKSGDLTSACRLFEAIPDPNTV 204

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           SW ++I+     G   + ++ F KM  LGI  DE T++A+L+AC+ LG     + +H   
Sbjct: 205 SWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLM 264

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
                FG  I + TA++D YAK G +  +  VF ++         + ++++G A HGLG 
Sbjct: 265 F-CTGFGAKITIATALLDTYAKLGRLSASYGVFTEV--GFADRVAWTAMLAGYAAHGLGR 321

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            +I +F  M   GL+PD VTF  +L ACSH GLV EGK +F  M   YGI+P+++HY CM
Sbjct: 322 EAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCM 381

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G L++AY +IQ+MP + N+ +W ALL ACR+H N ++G+   + L+++EP   
Sbjct: 382 VDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDP 441

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
            +Y++LSNM + +  W++A +VR L+ + G+++ PG+S IE+    H F    +SHP+T+
Sbjct: 442 RNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETE 501

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           +I   L+++  K++ AGY   T  V+ DV+EE KE +++ HSEKLA+AFGL+ S+  E +
Sbjct: 502 KIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEAL 561

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            ITKNLRICGDCH   KL+S I +R I++RD  RFH F  G CSC D+W
Sbjct: 562 IITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 203/474 (42%), Gaps = 86/474 (18%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S+LL  + SC S+    +IH ++  S L        QL++ +   G      +   LF  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALK---LFDD 99

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + ++  WN+L+ G+SR      +L  + +M  +  V PN  T   ++++C+   +  +
Sbjct: 100 MPHKDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDA 155

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH   IK G   ++ + N+LI+ Y   G + +A ++FE     + VS+N++I   AQ
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIA--AQ 213

Query: 188 VKEPCP--ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV-- 243
           V   C    +  F KM+   I+ D  T +A+  AC  L   ++ +  H +++    C   
Sbjct: 214 VTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMF----CTGF 269

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G+ + + TA+++ YAK G ++ +  VF+ +G +    AW++M++GY   G    A +LF+
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRV-AWTAMLAGYAAHGLGREAIKLFE 328

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M  +                               G+ PD VT   +L AC   G ++ 
Sbjct: 329 SMANK-------------------------------GLEPDHVTFTHLLSACSHSGLVNE 357

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK       E       +   + ++D+  +CG ++ A  V   +P               
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMP--------------- 402

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
                                ++P+   +  +L AC   G +E GK+  E ++N
Sbjct: 403 ---------------------MEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 160/368 (43%), Gaps = 21/368 (5%)

Query: 10  SLLALLESCK-SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           ++L+++ +C  +L     IHG  +  G    +  ++ LI+ +  SG      R   LF  
Sbjct: 141 TILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACR---LFEA 197

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I +PN   WN+++     +   +E +  +  M   GI   +  T   +L +C  L   K 
Sbjct: 198 IPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI-EQDEGTILALLQACLHLGVGKL 256

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              IH  +   G    + I  AL+  Y+  G ++ ++ VF      D V++  ++ GYA 
Sbjct: 257 AESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAA 316

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF  M +  ++PD  TF  + SAC+       GK +  V+ +  G +   +
Sbjct: 317 HGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYG-IEPRV 375

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--- 304
              + ++++  +CGL+N A  V   M M  +   W +++      G IE  +++ +    
Sbjct: 376 DHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M+  D  ++  + + YS    +  A ++   ++  G           L+   G  ++++G
Sbjct: 436 MEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERG-----------LKRTPGYSSIEYG 484

Query: 365 KRLHQQYI 372
            + H  ++
Sbjct: 485 NKNHHFFV 492



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 93/177 (52%), Gaps = 15/177 (8%)

Query: 1   MKRLVLEHS--SLLALLESCKSL---KQALQIHGQIVHSGLNHHIS-SSQLISFFALSGC 54
           M+RL +E    ++LALL++C  L   K A  IHG +  +G    I+ ++ L+  +A  G 
Sbjct: 229 MRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLG- 287

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
              L  S  +F+++   +   W  ++ GY+     +EA+ L+ SM +KG+  P++ TF  
Sbjct: 288 --RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGL-EPDHVTFTH 344

Query: 115 VLNSCAR---LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           +L++C+    ++  KS   +   +  +G+E  +   + ++      G +N+A++V +
Sbjct: 345 LLSACSHSGLVNEGKSYFNVMSEV--YGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQ 399


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/627 (35%), Positives = 356/627 (56%), Gaps = 25/627 (3%)

Query: 104 IVSPNNFTFPFVLNSCA-------RLSSFKSGCQIHCH---IIKFGLEFDLFIRNALIHF 153
           +VSPNN T    +++ +        ++SF   C +        K  +   +     L  +
Sbjct: 55  LVSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY 114

Query: 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213
             + G +  AH++F+     D VSYN ++  Y +      AL  F KM       D  ++
Sbjct: 115 TKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMP----VKDIASW 170

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
             + S   +    +      +V+ +  G   S      A+I+ Y + G +  AE ++  +
Sbjct: 171 NTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS------AMISGYVEHGDLEAAEELYKNV 224

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           GM KS    ++M++GY + GK+E A ++F +M  ++LV+W +MI+GY +       L++F
Sbjct: 225 GM-KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVF 283

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M    + P+ +++ +VL  C  L AL  G+++HQ  +      ++    T++I MY K
Sbjct: 284 KTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQ-LVSKSPLSKDTTACTSLISMYCK 342

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
           CG +D+A  +F ++P+  K V  +N++ISG AQHG G  ++ +F +M    +KPD +TFV
Sbjct: 343 CGDLDSAWKLFLEMPR--KDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFV 400

Query: 454 TVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            V+ AC+H G V+ G Q+F+SM   +GI+ +  HY C++DLL R GRLDEA  LI+ MP+
Sbjct: 401 AVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPF 460

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572
             ++ I+  LL ACR+H+N  + E A + LL+L+P     YV L+N+ A T +W++  +V
Sbjct: 461 KPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKV 520

Query: 573 RKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
           RK+M +  + K PG+S+IE     H F +S + HP+   I   L ++  K+K AGYVP+ 
Sbjct: 521 RKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDL 580

Query: 633 VQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEI 692
              + DV+EE KE ++ +HSEKLA+AFGL+ +     IR+ KNLR+CGDCH A K +S I
Sbjct: 581 EFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAI 640

Query: 693 YRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +REI+VRD  RFH F+ G CSC D+W
Sbjct: 641 EKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 178/445 (40%), Gaps = 91/445 (20%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYS--------------------------------RSDS 88
           +R +F ++       WNT++ GY+                                RS  
Sbjct: 92  ARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYG 151

Query: 89  PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR-------LSSFKSGCQIHCHIIKFGLE 141
            + AL  +  M  K I S N     F  N   +       +   K+G      I  +   
Sbjct: 152 VEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEH 211

Query: 142 FDL---------------FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            DL                +  A++  Y  FG +  A ++F+    ++LV++N++I GY 
Sbjct: 212 GDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +       L +F+ M +S ++P+  +  ++   C+ L+   +G+Q H +V K+   +  +
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS--PLSKD 329

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
               T++I+MY KCG ++ A ++F  M   K   +W++MISGY + G   +A  LFD+M 
Sbjct: 330 TTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNAMISGYAQHGAGRKALHLFDKMR 388

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                                      G M+     PD +T VAV+ AC   G +D G +
Sbjct: 389 N--------------------------GTMK-----PDWITFVAVILACNHAGFVDLGVQ 417

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
             +   +           T VID+  + G +D A+S+  ++P      +++ +++     
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK-PHAAIYGTLLGACRI 476

Query: 427 HGLGETSIAVFREMELMGLKPDGVT 451
           H      +A F    L+ L P   T
Sbjct: 477 H--KNLDLAEFAARNLLNLDPTSAT 499



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNG-LFRSRI 63
           L  SS+L    +  +L    Q+H  +  S L+   ++ + LIS +    CK G L  +  
Sbjct: 296 LSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMY----CKCGDLDSAWK 351

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WN ++ GY++  + ++AL L+  M   G + P+  TF  V+ +C    
Sbjct: 352 LFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKM-RNGTMKPDWITFVAVILACNHAG 410

Query: 124 SFKSGCQIHCHIIK-FGLE 141
               G Q    + K FG+E
Sbjct: 411 FVDLGVQYFKSMKKEFGIE 429


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/729 (34%), Positives = 404/729 (55%), Gaps = 61/729 (8%)

Query: 6   LEHSSLLALLESC--KSL-KQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS- 61
           +E S    LL+ C  ++L  +A  IHG IV +G +  +    +++F      K G+  S 
Sbjct: 56  IESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLF---VMTFLVNVYSKCGVMESA 112

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             +F  +   N+  W TL+ GY ++  P  AL L+  ML  G   P+N+T   VLN+C+ 
Sbjct: 113 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAG-AYPSNYTLGIVLNACSS 171

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L S + G Q+H ++IK+ ++FD  I N+L  FYS F  +  A K F+    +D++S+ ++
Sbjct: 172 LQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSV 231

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+      +   +L  F  M    ++P+ +T  ++ SAC  +    +G Q H++  K LG
Sbjct: 232 ISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK-LG 290

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
             GS++L+K +++ +Y KCG +                               IE A++L
Sbjct: 291 -YGSSILIKNSIMYLYLKCGWL-------------------------------IE-AQKL 317

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGF-----------SQALELFGKMESLGIHPDEVTMVA 350
           F+ M+  +LV+W AMI+G++++              S AL +F K+   G+ PD  T  +
Sbjct: 318 FEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSS 377

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL  C  L AL+ G+++H Q I++ V   ++ + TA++ MY KCGSID A   F ++P  
Sbjct: 378 VLSVCSNLVALEQGEQIHGQIIKSGVLA-DVVVGTALVSMYNKCGSIDKASKAFLEMPS- 435

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            +T+  + S+I+G A+HGL + ++ +F +M L+G+KP+ VTFV VL ACSH GL +E   
Sbjct: 436 -RTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALY 494

Query: 471 FFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +FE M   Y IKP M+H+ C++D+  R GR++EA+ ++  M ++ N  IW  L+A CR H
Sbjct: 495 YFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSH 554

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
             + +G  A ++LL L+P     YV L NM     RW++  +VRKLM +  + K   WS+
Sbjct: 555 GKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSW 614

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           I     ++ F  + KSH Q+ E+  +L+ +  ++K+ GY P    V     EE +E V+S
Sbjct: 615 ISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEP-IEDVEVIEKEENEERVLS 673

Query: 650 ---YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
               HSEKLA+AFGL+N  +   IR+ K++ +C DCH   + +S +  REI++RD+ + H
Sbjct: 674 STVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLH 733

Query: 707 LFKKGNCSC 715
            F  G CSC
Sbjct: 734 KFLNGYCSC 742



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 1   MKRLVLEHSSLLALLESCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLF 59
           MK  +   SS+L++  +  +L+Q  QIHGQI+ SG L   +  + L+S +   G  +   
Sbjct: 368 MKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSID--- 424

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           ++   F ++ +  +  W +++ G++R    Q+AL L+  M   GI  PN  TF  VL++C
Sbjct: 425 KASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGI-KPNQVTFVGVLSAC 483

Query: 120 A 120
           +
Sbjct: 484 S 484


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 348/606 (57%), Gaps = 12/606 (1%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L  CA L   ++G ++H   ++ G++ D  +   L   Y+    ++    +   +    
Sbjct: 41  LLTGCATLR--RTG-ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPT 97

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
            V Y + I+ ++       AL L  +M    + P + T  +   AC  L    +G+  HA
Sbjct: 98  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLA---LGRALHA 154

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
             +K L   G +  + TA++ MYA+ G  + A  +F  M         ++M++ Y + G 
Sbjct: 155 YAFK-LALAGDS-YVATALLGMYARGGDADAARALFDEMP-DPHVVPVTAMLTCYAKMGA 211

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           ++ AR+LFD M  +D + W AMI GY+Q G  ++AL LF  M   G+ PDEV ++  L A
Sbjct: 212 LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSA 271

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              LG  + G+ LH     +     N  + TA+IDMY KCGS++ A+SVF  I    K +
Sbjct: 272 VAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGD--KDI 329

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            ++N++I+G A HG    ++ +F ++   GL P  +TF+ +L ACSH GLV+EG QFF+S
Sbjct: 330 VVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQS 389

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   Y I P++EHYGCMVDLL R G ++EA+ L+QSM    ++V+W +LLAACRLH+N  
Sbjct: 390 MEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 449

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G+     L+     +   Y+LLSN+ A    WEE  +VR +M  SGIQK PG S IE  
Sbjct: 450 LGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVG 509

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             ++ F+A   SHP+T EI  ML+ M   +K  G+VP T  V+ D+DE  KE  ++ HSE
Sbjct: 510 RKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSE 569

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGLI++   ETI+I KNLR C DCH   KL+S+I  R+I+ RD  RFH F  G+C
Sbjct: 570 KLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSC 629

Query: 714 SCMDFW 719
           +C D+W
Sbjct: 630 TCGDYW 635



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 160/345 (46%), Gaps = 38/345 (11%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           H +  + +++ +A  G    L  +R LF  + + +   WN ++ GY++   P EAL L+ 
Sbjct: 195 HVVPVTAMLTCYAKMGA---LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR 251

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSI 156
            ML  G V P+       L++ A+L + +SG  +H ++     ++ +  +  ALI  Y  
Sbjct: 252 WMLRSG-VDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 310

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VF     +D+V +N +INGYA   +   AL +F +++   + P   TF+ +
Sbjct: 311 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 370

Query: 217 FSACTELNDPRIGKQF-------HAVVYK--NLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
            +AC+       G QF       +A+V K  + GC          ++++  + GL+  A 
Sbjct: 371 LNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGC----------MVDLLGRAGLIEEAF 420

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVG 324
            +  +M ++  T  W S+++       +   +Q+ D +    L +   +  + + Y+ VG
Sbjct: 421 HLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVG 480

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            + +   +   M++ GI  +            G  A++ G+++++
Sbjct: 481 NWEEVARVRSMMKASGIQKEP-----------GCSAIEVGRKVYE 514


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 348/606 (57%), Gaps = 12/606 (1%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L  CA L   ++G ++H   ++ G++ D  +   L   Y+    ++    +   +    
Sbjct: 40  LLTGCATLR--RTG-ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPT 96

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
            V Y + I+ ++       AL L  +M    + P + T  +   AC  L    +G+  HA
Sbjct: 97  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLA---LGRALHA 153

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
             +K L   G +  + TA++ MYA+ G  + A  +F  M         ++M++ Y + G 
Sbjct: 154 YAFK-LALAGDS-YVATALLGMYARGGDADAARALFDEMP-DPHVVPVTAMLTCYAKMGA 210

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           ++ AR+LFD M  +D + W AMI GY+Q G  ++AL LF  M   G+ PDEV ++  L A
Sbjct: 211 LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSA 270

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              LG  + G+ LH     +     N  + TA+IDMY KCGS++ A+SVF  I    K +
Sbjct: 271 VAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGD--KDI 328

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            ++N++I+G A HG    ++ +F ++   GL P  +TF+ +L ACSH GLV+EG QFF+S
Sbjct: 329 VVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQS 388

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   Y I P++EHYGCMVDLL R G ++EA+ L+QSM    ++V+W +LLAACRLH+N  
Sbjct: 389 MEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 448

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G+     L+     +   Y+LLSN+ A    WEE  +VR +M  SGIQK PG S IE  
Sbjct: 449 LGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVG 508

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             ++ F+A   SHP+T EI  ML+ M   +K  G+VP T  V+ D+DE  KE  ++ HSE
Sbjct: 509 RKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSE 568

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA+AFGLI++   ETI+I KNLR C DCH   KL+S+I  R+I+ RD  RFH F  G+C
Sbjct: 569 KLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSC 628

Query: 714 SCMDFW 719
           +C D+W
Sbjct: 629 TCGDYW 634



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 160/345 (46%), Gaps = 38/345 (11%)

Query: 38  HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97
           H +  + +++ +A  G    L  +R LF  + + +   WN ++ GY++   P EAL L+ 
Sbjct: 194 HVVPVTAMLTCYAKMGA---LDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR 250

Query: 98  SMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF-GLEFDLFIRNALIHFYSI 156
            ML  G V P+       L++ A+L + +SG  +H ++     ++ +  +  ALI  Y  
Sbjct: 251 WMLRSG-VDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 309

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VF     +D+V +N +INGYA   +   AL +F +++   + P   TF+ +
Sbjct: 310 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 369

Query: 217 FSACTELNDPRIGKQF-------HAVVYK--NLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
            +AC+       G QF       +A+V K  + GC          ++++  + GL+  A 
Sbjct: 370 LNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGC----------MVDLLGRAGLIEEAF 419

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVG 324
            +  +M ++  T  W S+++       +   +Q+ D +    L +   +  + + Y+ VG
Sbjct: 420 HLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVG 479

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            + +   +   M++ GI  +            G  A++ G+++++
Sbjct: 480 NWEEVARVRSMMKASGIQKEP-----------GCSAIEVGRKVYE 513


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 341/611 (55%), Gaps = 47/611 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF--YSIFGYINNAHKVFEGSLA 172
           VL  C  L+  K   +I  H+I  GL+    I N++++F   SI G +  A  +F   L 
Sbjct: 15  VLQGCNNLTRLK---KIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILN 71

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
               ++N++I G+AQ   P  A++ + +M  DS   PD FTF     AC  +   +  ++
Sbjct: 72  PQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEE 131

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H  + +                                   G  +     + ++  Y R
Sbjct: 132 VHGSIIRT----------------------------------GYERDVVVCTGLVRCYGR 157

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G +E AR +FD M +RDLV+W AMIS YSQ G   +AL ++  M +  +  D  T+V +
Sbjct: 158 NGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGL 217

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L +C  +GAL+ G +LH+   E  +  RN+F+  A+IDMYAKCGS+D AL VF  +P++ 
Sbjct: 218 LSSCSHVGALNMGVKLHRIASEKGLL-RNVFVGNALIDMYAKCGSLDGALEVFNGMPRDA 276

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            T   +NS+I G   HG G+ +I  F +M   G++P+ + F+ +LC CSH GLVEEG +F
Sbjct: 277 FT---WNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEF 333

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  M + + +KP ++HYGC+VD+  R G+L++A  +I   P+  + V+WR LL++ ++H+
Sbjct: 334 FHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHK 393

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           N  IGEIA + L  L   +    VLL+ + A     +   ++RKL+   GI+  PGWS+I
Sbjct: 394 NVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWI 453

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF--DVDEEEKETVV 648
           E +  +HRF+   KSHP ++ I   L+++T K   AGYV +  Q +F     EE  E+  
Sbjct: 454 EVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHGSCSEECLESSS 513

Query: 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF 708
           +YHSEKLA+AFGL  +    ++RI KNLR+C DCH   K +S  + R+I+VRD +RFH F
Sbjct: 514 TYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHF 573

Query: 709 KKGNCSCMDFW 719
           K G CSC D+W
Sbjct: 574 KGGLCSCRDYW 584



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 193/409 (47%), Gaps = 40/409 (9%)

Query: 4   LVLEHS---SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           +VLE S   ++L +L+ C +L +  +I   ++ +GL +H + S  I  F        L  
Sbjct: 2   MVLETSKANAILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPY 61

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           ++ LF  I NP    WN+++RG+++S SP +A+  Y  ML   +  P+ FTF F L +C 
Sbjct: 62  AQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACE 121

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           R+ + K   ++H  II+ G E D+ +   L+  Y   G +  A  VF+    RDLV++N 
Sbjct: 122 RIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNA 181

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+ Y+Q      AL ++  M++  +  D FT V + S+C+ +    +G + H +  +  
Sbjct: 182 MISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEK- 240

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +  N+ +  A+I+MYAKCG ++ A  VF+  GM +    W+SMI G+           
Sbjct: 241 -GLLRNVFVGNALIDMYAKCGSLDGALEVFN--GMPRDAFTWNSMIVGFG---------- 287

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGF-SQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
                                 V GF  +A+  F +M   G+ P+ +  + +L  C   G
Sbjct: 288 ----------------------VHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQG 325

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
            ++ G     Q          I     ++DMY + G ++ AL +    P
Sbjct: 326 LVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSP 374


>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/597 (39%), Positives = 347/597 (58%), Gaps = 64/597 (10%)

Query: 130 QIHCHIIKFGLEFDLFIRNALIH--FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           Q H H+I  GL       N L+     S FG ++ AH++F+     D+  YNT+I  +A 
Sbjct: 6   QTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAV 65

Query: 188 VKEPC-PALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQF--HAVVYKNLGCV 243
           +      ++ +F  M + S   P+ +TFV +F AC        G+Q   HA+    +G +
Sbjct: 66  IPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAI---KIG-L 121

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            SN+ +  A+I MYA  GL++ A RVF    + +   +W+ MI GY   G+I RA+++FD
Sbjct: 122 ESNLFVTNAMIRMYANWGLVDEARRVFD-WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFD 180

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M +RD+VSWT +I+GY QVG F +AL+LF +M                   +   ALD 
Sbjct: 181 EMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM-------------------LQTVALDQ 221

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+ +H  YI+      N  L  +++DMYAKCG ID A  VF+        V  +N++I G
Sbjct: 222 GRWIHV-YIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGG 280

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483
            A HG  + +I +F +M++  + P+ VTFV +L ACSHG LVEEG++  E++ N      
Sbjct: 281 YAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGREAEETVFN------ 334

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
                                     MP   ++ IW ALL ACR+H++ + G+  G+ + 
Sbjct: 335 --------------------------MPMAPDATIWGALLGACRIHKDIERGQRIGKIIK 368

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +L+ DH   +VLL+N+ + + +W+EA+ VR+ ++ SG +K PG S IE NG  H+FL   
Sbjct: 369 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 428

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDV-DEEEKETVVSYHSEKLALAFGLI 662
           +SHPQTK++ L L +MT KLK+AGYVP   +V+ D+ DEE+KET +S HSEKLA+AFGLI
Sbjct: 429 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLI 488

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           N+     IRI KNLR+C DCH A K +S++Y+REI+VRD IR+H FK G CSC D+W
Sbjct: 489 NTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 545



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 199/408 (48%), Gaps = 28/408 (6%)

Query: 21  LKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           + Q  Q H  ++ +GL  H I++++L+     S     L  +  LF QI  P++FI+NT+
Sbjct: 1   MNQIKQTHAHLITTGLILHPITANKLLKVLIASSF-GSLSYAHQLFDQIPKPDVFIYNTM 59

Query: 80  MRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ ++    S   ++ ++ SM+      PN +TF FV  +C        G QI  H IK 
Sbjct: 60  IKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKI 119

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GLE +LF+ NA+I  Y+ +G ++ A +VF+ SL +DL S+N +I GY    E   A  +F
Sbjct: 120 GLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMF 179

Query: 199 RKMQDSCIQP-----DAFTFVAMFSACTELNDPRI-------GKQFHAVVYKNLGCVGSN 246
            +M +  +         +  V  F    +L    +       G+  H  VY +   +  N
Sbjct: 180 DEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTVALDQGRWIH--VYIDKSEIKMN 237

Query: 247 MLLKTAVINMYAKCGLMNMAERVF-STMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
             L  ++++MYAKCG ++ A +VF    G+      W++MI GY   GK + A  LF+QM
Sbjct: 238 ERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQM 297

Query: 306 DQRDL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
               +    V++ A+++  S      +  E    + ++ + PD     A+L AC     +
Sbjct: 298 KVEKVSPNKVTFVALLNACSHGKLVEEGREAEETVFNMPMAPDATIWGALLGACRIHKDI 357

Query: 362 DFGKRLHQ--QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           + G+R+ +  + +++   G ++ L     ++Y+  G  D A +V  KI
Sbjct: 358 ERGQRIGKIIKELDSDHIGCHVLLA----NLYSASGQWDEAKAVRQKI 401


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/673 (35%), Positives = 368/673 (54%), Gaps = 56/673 (8%)

Query: 64  LFSQIDNP-------------NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
           ++S++D+P             N+  W +L+ G +++     AL  +  M  +G V+PN+F
Sbjct: 51  MYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREG-VAPNDF 109

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TFP V  + A L    +G QIH   +K G   D+F+  +    Y      ++A K+F+  
Sbjct: 110 TFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             R+L ++N  I+       P  A+  F + +    QP++ TF    +AC++     +G 
Sbjct: 170 PERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGM 229

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           Q H +V+++     +++ +   +I+ Y KC  +  +E +F+ MGM K+  +W S+++ Y 
Sbjct: 230 QMHGLVFRS--GFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGM-KNAVSWCSLVAAYV 286

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           +  + E+A  L+ +  +  + +   MIS                               +
Sbjct: 287 QNHEDEKASVLYLRSRKEIVETSDFMIS-------------------------------S 315

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-K 409
           VL AC G+  L+ G+ +H   ++  V  RNIF+ +A++DMY KCG I+ +   F ++P K
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACV-ERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 374

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL--KPDGVTFVTVLCACSHGGLVEE 467
           NL T+   NS+I G A  G  + ++A+F +M   G    P+ +TFV++L ACS  G VE 
Sbjct: 375 NLVTL---NSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVEN 431

Query: 468 GKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G + F+SM + YGI+P  EHY C+VD+L R G +++A+  I+ MP      +W AL  AC
Sbjct: 432 GMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNAC 491

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H    +G +A + L  L+P    ++VLLSN  A   RW EA  VR+ M   GI+K  G
Sbjct: 492 RMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAG 551

Query: 587 WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
           +S+I     +H F A  +SH   KEI+ ML  +  K+++AGY P+    ++D++EEEK  
Sbjct: 552 YSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAA 611

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            VS+HSEKLALAFGL+       IRITKNLRICGDCH  FK +S   +REI+VRD  RFH
Sbjct: 612 EVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFH 671

Query: 707 LFKKGNCSCMDFW 719
            FK G CSC D+W
Sbjct: 672 RFKDGICSCKDYW 684



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 178/422 (42%), Gaps = 37/422 (8%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +I   N+  WN  +        P+EA+  +      G   PN+ TF   LN+C+
Sbjct: 162 ARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIG-GQPNSITFCGFLNACS 220

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                  G Q+H  + + G + D+ + N LI FY     I ++  +F     ++ VS+ +
Sbjct: 221 DGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCS 280

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           L+  Y Q  E   A  L+ + +   ++   F   ++ SAC  +    +G+  HA   K  
Sbjct: 281 LVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK-- 338

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            CV  N+ + +A+++MY KCG +  +E+ F  M   K+    +S+I GY  +G+++ A  
Sbjct: 339 ACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTLNSLIGGYAHQGQVDMALA 397

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF+ M  R                               G  P+ +T V++L AC   GA
Sbjct: 398 LFEDMAPR-----------------------------GCGPAPNYMTFVSLLSACSRAGA 428

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G ++                 + ++DM  + G ++ A     K+P    T+S++ ++
Sbjct: 429 VENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIK-PTISVWGAL 487

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
            +    H  G+  + +     L  L P D    V +    +  G   E     E M   G
Sbjct: 488 QNACRMH--GKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVG 545

Query: 480 IK 481
           IK
Sbjct: 546 IK 547



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 180/413 (43%), Gaps = 39/413 (9%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
            +L +    SS + G  +H  I+K        F+ N LI+ YS   +  +A  V   + A
Sbjct: 11  LLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R++VS+ +L++G AQ      AL+ F +M+   + P+ FTF  +F A   L  P  GKQ 
Sbjct: 71  RNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQI 130

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA+  K   C          +++++  C   +M                       Y + 
Sbjct: 131 HALAVK---C--------GRILDVFVGCSAFDM-----------------------YCKT 156

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
              + AR+LFD++ +R+L +W A IS     G   +A+E F +   +G  P+ +T    L
Sbjct: 157 RLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFL 216

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC     LD G ++H     +  F  ++ +   +ID Y KC  I ++  +F ++   +K
Sbjct: 217 NACSDGLLLDLGMQMHGLVFRS-GFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEM--GMK 273

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
               + S+++   Q+   E +  ++       ++       +VL AC+    +E G+   
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIH 333

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +   ++  +     +VD+  + G ++++      MP + N V   +L+  
Sbjct: 334 AHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTLNSLIGG 385



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 165/342 (48%), Gaps = 16/342 (4%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILF 65
           +    L +C     L   +Q+HG +  SG +  +S  + LI F+    CK  +  S I+F
Sbjct: 211 TFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYG--KCKQ-IRSSEIIF 267

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +++   N   W +L+  Y ++   ++A VLY     K IV  ++F    VL++CA ++  
Sbjct: 268 AEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKEIVETSDFMISSVLSACAGMAGL 326

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  IH H +K  +E ++F+ +AL+  Y   G I ++ + F+    ++LV+ N+LI GY
Sbjct: 327 ELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGY 386

Query: 186 AQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           A   +   AL LF  M  +     P+  TFV++ SAC+       G +    +    G +
Sbjct: 387 AHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYG-I 445

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK----IERAR 299
                  + +++M  + G++  A      M +  + + W ++ +     GK    I  A 
Sbjct: 446 EPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAE 505

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            LF ++D +D  +   + + ++  G +++A  +  +M+ +GI
Sbjct: 506 NLF-KLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGI 546


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/682 (34%), Positives = 378/682 (55%), Gaps = 54/682 (7%)

Query: 45  LISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI 104
           LI  FA +G    L  +R +F+ +    + +W  ++  Y +     +A+ L+  ML  G 
Sbjct: 189 LIDMFARNG---DLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGF 245

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY---IN 161
             P+ +T   ++++CA   S   G Q+H  +++ GL  D  +   L+  Y+       + 
Sbjct: 246 -EPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSME 304

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVK-EPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
            A KVF+     +++S+  LI+GY Q   +   A+ L  +M +  I+P+  T+ ++  AC
Sbjct: 305 CARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKAC 364

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L+D   G+Q HA V K    +G+  ++  A+++MYA+ G M                 
Sbjct: 365 ANLSDQDSGRQIHARVMKT--SIGNVNVVGNALVSMYAESGCM----------------- 405

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI--SGYSQVGGFSQALELFGKMES 338
                          E AR+ FDQ+ +R+L+S ++ I  +G S     SQ       +ES
Sbjct: 406 ---------------EEARKAFDQLYERNLLSTSSDIGETGRSNASWSSQ-------IES 443

Query: 339 LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398
           + +     T  ++L A   +G    G++LH   I+   F  +  ++ +++ MY++CG +D
Sbjct: 444 MDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTG-FESDKGISNSLVSMYSRCGYLD 502

Query: 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458
            A   F ++  +   +S + SIIS LA+HG  E ++++F +M L G+KP+ VT++ VL A
Sbjct: 503 DACRAFDEMEDDHNVIS-WTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSA 561

Query: 459 CSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517
           CSH GLV+EGK++F SM  ++ + P+MEHY CMVDLLAR G + EA   I  MP  A+++
Sbjct: 562 CSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADAL 621

Query: 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577
           +W+ LL ACR + N +IGEIA + ++DLEP   A YVLLSN+ A    W+E  ++R LM 
Sbjct: 622 VWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMR 681

Query: 578 DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF 637
              + K  G S++    T+H F A   SHP+ +EI   L  +  ++K  GYVP+T  V+ 
Sbjct: 682 HRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLH 741

Query: 638 DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697
           D+ ++ KE  +  HSEK+A+AFGLI +   + IRI KNLR+C DCH A K +S+   REI
Sbjct: 742 DMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREI 801

Query: 698 MVRDAIRFHLFKKGNCSCMDFW 719
           ++RD+ RFH  K G CSC ++W
Sbjct: 802 ILRDSNRFHRMKDGKCSCGEYW 823



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 219/468 (46%), Gaps = 49/468 (10%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS-GCQ 130
           ++  W  +    +R+ + QEALVL   ML  G+  PN FT     ++C     F+S G  
Sbjct: 110 DLVSWTAMAFCLTRNGAEQEALVLLGEMLESGL-RPNAFTLCAAAHACFPGELFRSSGGT 168

Query: 131 IHCHIIKFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189
           +    IK G    D+ +  ALI  ++  G +  A KVF G + R +V +  +I  Y Q  
Sbjct: 169 VLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGG 228

Query: 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLL 249
               A+ LF  M +   +PD +T  +M SAC E     +G+Q H++V + LG V S+  +
Sbjct: 229 CAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLR-LGLV-SDTCV 286

Query: 250 KTAVINMYAKCGL---MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
              +++MY K  +   M  A +VF  M  + +  +W+++ISGY + G             
Sbjct: 287 SCGLVDMYTKLQMEQSMECARKVFKRMP-THNVMSWTALISGYVQCG------------- 332

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                            G  + A+EL  +M +  I P+ +T  ++L+AC  L   D G++
Sbjct: 333 -----------------GQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQ 375

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI-PKNLKTVSLFNSIISGLA 425
           +H + ++  +   N+ +  A++ MYA+ G ++ A   F ++  +NL + S      S + 
Sbjct: 376 IHARVMKTSIGNVNV-VGNALVSMYAESGCMEEARKAFDQLYERNLLSTS------SDIG 428

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
           + G    S +   ++E M +     TF ++L A +  GL  +G+Q     +  G +    
Sbjct: 429 ETGRSNASWS--SQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKG 486

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
               +V + +R G LD+A      M  D N + W ++++A   H +A+
Sbjct: 487 ISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAE 534



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 196/445 (44%), Gaps = 45/445 (10%)

Query: 26  QIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS 84
           Q+H  ++  GL +    S  L+  +     +  +  +R +F ++   N+  W  L+ GY 
Sbjct: 270 QLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYV 329

Query: 85  RSDSPQE-ALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
           +    +  A+ L   ML++ I  PN+ T+  +L +CA LS   SG QIH  ++K  +   
Sbjct: 330 QCGGQENNAVELLCEMLNESI-EPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNV 388

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
             + NAL+  Y+  G +  A K F+    R+L+S ++ I    +      A W   +++ 
Sbjct: 389 NVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSN----ASW-SSQIES 443

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263
             +    FTF ++ SA   +  P  G+Q HA+  K      S+  +  ++++MY++CG +
Sbjct: 444 MDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKT--GFESDKGISNSLVSMYSRCGYL 501

Query: 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQV 323
           + A R F  M    +  +W+S+IS   + G  ERA                         
Sbjct: 502 DDACRAFDEMEDDHNVISWTSIISALAKHGHAERA------------------------- 536

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
                 L LF  M   G+ P++VT +AVL AC  +G +  GK   +   ++      +  
Sbjct: 537 ------LSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEH 590

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
              ++D+ A+ G +  AL    ++P   K  +L    + G A        I       ++
Sbjct: 591 YACMVDLLARSGLVQEALEFINEMP--CKADALVWKTLLG-ACRTYENIEIGEIAARHVI 647

Query: 444 GLKP-DGVTFVTVLCACSHGGLVEE 467
            L+P D   +V +    +HGGL +E
Sbjct: 648 DLEPQDPAPYVLLSNLYAHGGLWDE 672



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 171/371 (46%), Gaps = 44/371 (11%)

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLVSYNTLINGYAQVKEPCPALWLF 198
           L+ D  + N+L+  YS  G++  A +VF+G    RDLVS+  +     +      AL L 
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 199 RKMQDSCIQPDAFTFVAMFSAC--TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
            +M +S ++P+AFT  A   AC   EL     G      +    G  G+++ +  A+I+M
Sbjct: 135 GEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAI--KTGFWGTDVSVGCALIDM 192

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           +A+ G +  A +VF+ + + ++   W+ MI+ Y                           
Sbjct: 193 FARNGDLVAARKVFNGL-VERTVVVWTLMITRYV-------------------------- 225

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
                Q G   +A+ELF  M   G  PD  TM +++ AC   G+   G++LH   +  + 
Sbjct: 226 -----QGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLH-SLVLRLG 279

Query: 377 FGRNIFLTTAVIDMYAKC---GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE-T 432
              +  ++  ++DMY K     S++ A  VF ++P +   V  + ++ISG  Q G  E  
Sbjct: 280 LVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH--NVMSWTALISGYVQCGGQENN 337

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           ++ +  EM    ++P+ +T+ ++L AC++    + G+Q    ++   I         +V 
Sbjct: 338 AVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVS 397

Query: 493 LLARDGRLDEA 503
           + A  G ++EA
Sbjct: 398 MYAESGCMEEA 408



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 13/298 (4%)

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-RDLVSWTAMISGYSQVGGF 326
           R+  T  +       +S+++ Y++ G +  AR++FD M   RDLVSWTAM    ++ G  
Sbjct: 68  RLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAE 127

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL--DFGKRLHQQYIENVVFGRNIFLT 384
            +AL L G+M   G+ P+  T+ A   AC   G L    G  +    I+   +G ++ + 
Sbjct: 128 QEALVLLGEMLESGLRPNAFTLCAAAHACFP-GELFRSSGGTVLGFAIKTGFWGTDVSVG 186

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
            A+IDM+A+ G +  A  VF  + +  +TV ++  +I+   Q G    ++ +F  M   G
Sbjct: 187 CALIDMFARNGDLVAARKVFNGLVE--RTVVVWTLMITRYVQGGCAGKAVELFLGMLEDG 244

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL---LARDGRLD 501
            +PDG T  +++ AC+  G    G+Q    +L  G+         +VD+   L  +  ++
Sbjct: 245 FEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSME 304

Query: 502 EAYGLIQSMPYDANSVIWRALLAA---CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            A  + + MP   N + W AL++    C    N  +  +       +EP+H  +  LL
Sbjct: 305 CARKVFKRMPTH-NVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLL 361



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G+ LH++ +   V   +  +  +++ MY+KCG +  A  VF  + + L+ +  + ++  
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGM-RGLRDLVSWTAMAF 119

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE-EGKQFFESMLNYGIK 481
            L ++G  + ++ +  EM   GL+P+  T      AC  G L    G       +  G  
Sbjct: 120 CLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFW 179

Query: 482 PQMEHYGC-MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
                 GC ++D+ AR+G L  A  +   +  +   V+W  ++
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGL-VERTVVVWTLMI 221


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 358/591 (60%), Gaps = 15/591 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQI 68
           + ++LL+SCKS+ Q  QI   I   GL       ++L++F   S   +  + +RI F+ I
Sbjct: 10  TYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRI-FNHI 68

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            +P++FI+N +++ + +  S + A+ L+  +  +G V P+N+T+P+VL     +   + G
Sbjct: 69  HHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERG-VWPDNYTYPYVLKGIGCIGEVREG 127

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            +IH  ++K GLEFD ++ N+L+  Y+  G +    +VFE    RD VS+N +I+GY + 
Sbjct: 128 EKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRC 187

Query: 189 KEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
           K    A+ ++R+MQ +S  +P+  T V+  SAC  L +  +GK+ H  +   L       
Sbjct: 188 KRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTP--- 244

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++  A+++MY KCG +++A  +F  M + K+   W+SM++GY   G++++AR LF++   
Sbjct: 245 IMGNALLDMYCKCGCVSVAREIFDAM-IVKNVNCWTSMVTGYVICGQLDQARYLFERSPS 303

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
           RD+V WTAMI+GY Q   F  A+ LFG+M+  G+ PD+  +V +L  C  LGAL+ GK +
Sbjct: 304 RDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWI 363

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H  YI+      +  ++TA+I+MYAKCG I+ +L +F  + K++ T S + SII GLA +
Sbjct: 364 H-NYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGL-KDMDTTS-WTSIICGLAMN 420

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEH 486
           G    ++ +F  M+  GLKPD +TFV VL AC H GLVEEG++ F SM + Y I+P +EH
Sbjct: 421 GKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEH 480

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVI---WRALLAACRLHRNAKIGEIAGQKLL 543
           YGC +DLL R G L EA  L++ +P   N +I   + ALL+ACR + N  +GE     L 
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALA 540

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            ++    + + LL+++ A   RWE+ R+VR  M D GI+K PG+S IE +G
Sbjct: 541 KVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 353/644 (54%), Gaps = 77/644 (11%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           N   +P +L+SC  L+      QIH  II  G +    I + LI+ YS+F   + A  VF
Sbjct: 51  NYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVF 106

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           + +     + +N++I  Y + K+   AL ++  M +                        
Sbjct: 107 DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK----------------------- 143

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
                        G +  ++ +   +++MY+K G +  A  VF  M   +   AW++MI+
Sbjct: 144 -------------GGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIA 189

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG------- 340
           G ++      AR++FDQM  +D VSW  M++GY+  G F + LELF KM+ LG       
Sbjct: 190 GLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK-LGNVTWNVI 248

Query: 341 ------------------------IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
                                    HP+ VT V+VL A   L A   G   H   I+ + 
Sbjct: 249 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ-MG 307

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           F  N  +  ++IDMYAKCG +D +  +F ++     TVS +N+++SG A HG G+ +IA+
Sbjct: 308 FLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK-DTVS-WNAMLSGYAVHGHGDRAIAL 365

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F  M+   ++ D V+FV+VL AC H GLVEEG++ F SM + Y IKP +EHY CMVDLL 
Sbjct: 366 FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 425

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G  DE  G I+ MP + ++ +W ALL +CR+H N K+GE+A   L+ LEP + AH+V+
Sbjct: 426 RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVV 485

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELM 615
           LS++ A++ RW +A + R  M+D G++K PG S++E    +H F    KSHPQ + + L+
Sbjct: 486 LSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL 545

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
              +  K++  GYVP+   V+ +V+EE+KE  +  HSE+LA+ F L+N+    TI+I KN
Sbjct: 546 WNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKN 605

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+C DCH   K +S+I  R I+VRDA RFH F+ G CSC D+W
Sbjct: 606 LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 217/513 (42%), Gaps = 103/513 (20%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           LL SCK L   LQIH QI+ SG  HH S + LI+ ++L   K  L RS  +F    NP+ 
Sbjct: 58  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH-KCDLARS--VFDSTPNPSR 114

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            +WN+++R Y+RS    EAL +Y  M+ KG                              
Sbjct: 115 ILWNSMIRAYTRSKQYNEALEMYYCMVEKG------------------------------ 144

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
                GLE D+FI   L+  YS  G +  A +VF+    RD+V++N +I G +Q ++P  
Sbjct: 145 -----GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYV 199

Query: 194 ALWLFRKMQDSCIQPD--------AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A  +F +M D   Q D         +     F    EL D              LG V  
Sbjct: 200 ARRVFDQMVD---QDDVSWGTMMAGYAHNGCFVEVLELFDK-----------MKLGNVTW 245

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFST--------------------------------- 272
           N+++   + N +AK  + +  +                                      
Sbjct: 246 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 305

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
           MG   +T   +S+I  Y + G+++ + +LF++MD +D VSW AM+SGY+  G   +A+ L
Sbjct: 306 MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 365

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F  M+   +  D V+ V+VL AC   G ++ G+++     +      ++     ++D+  
Sbjct: 366 FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 425

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGETSIAVFREMELMGLKP-D 448
           + G  D  L  F K+        ++ +++     H    LGE ++       L+ L+P +
Sbjct: 426 RAGLFDETLG-FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD-----HLVKLEPRN 479

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
              FV +    +  G   +  +    M + G+K
Sbjct: 480 PAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 512



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 164/344 (47%), Gaps = 14/344 (4%)

Query: 2   KRLVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS 61
           KR V+  ++++A L   +    A ++  Q+V       +S   +++ +A +GC   +   
Sbjct: 178 KRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQD---DVSWGTMMAGYAHNGCFVEVLE- 233

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
             LF ++   N+  WN ++  Y ++   +EA+  +  M  +    PN+ TF  VL + A 
Sbjct: 234 --LFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENF-HPNSVTFVSVLPAAAY 289

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L++F+ G   H  II+ G   +  + N+LI  Y+  G ++ + K+F     +D VS+N +
Sbjct: 290 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 349

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ-FHAVVYKNL 240
           ++GYA       A+ LF  MQ+S +Q D+ +FV++ SAC        G++ FH++  K  
Sbjct: 350 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 409

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +  ++     ++++  + GL +        M +      W +++        ++    
Sbjct: 410 --IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEV 467

Query: 301 LFD---QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
             D   +++ R+   +  + S Y+Q G ++ A +   KM  LG+
Sbjct: 468 ALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGL 511


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/629 (36%), Positives = 355/629 (56%), Gaps = 46/629 (7%)

Query: 96  YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
           +T  L    V+PN      +++ C   +S +   QI  + IK   E D+     LI+F +
Sbjct: 18  FTKPLKIDTVNPNPPNPILLISKC---NSERELMQIQAYAIKSHQE-DVSFNTKLINFCT 73

Query: 156 ---IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT 212
                  ++ A  +F+     D+V +N++  GY++   P     LF ++ +  + PD +T
Sbjct: 74  ESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYT 133

Query: 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFST 272
           F ++  AC        G+Q H +  K LG V  N+ +   +INMY +C            
Sbjct: 134 FPSLLKACAVAKALEEGRQLHCLSMK-LG-VDDNVYVCPTLINMYTECE----------- 180

Query: 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                 ++ AR +FD++ +  +V + AMI+GY++    ++AL L
Sbjct: 181 ---------------------DVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSL 219

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F +M+   + P+E+T+++VL +C  LG+LD GK +H+ Y +   F + + + TA+IDM+A
Sbjct: 220 FREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHE-YAKKHGFCKYVKVNTALIDMFA 278

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           KCGS+D A+S+F  +    K    ++++I   A HG  E S+ +F  M    ++PD +TF
Sbjct: 279 KCGSLDDAVSIFENM--RYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITF 336

Query: 453 VTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           + +L ACSH GLVEEG+++F  M++ +GI P ++HYG MVDLL R G L++AY  I  +P
Sbjct: 337 LGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLP 396

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
                ++WR LLAAC  H N ++ E   +++L+L+  HG  YV+LSN+ A   +WE    
Sbjct: 397 ISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDS 456

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           +RK+M D    K PG S IE N  +H F +       T ++   L +M  +LK AGYVP+
Sbjct: 457 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPD 516

Query: 632 TVQVVF-DVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           T  VV  D+ ++EKE  + YHSEKLA+AFGL+N+    TIR+ KNLR+C DCH A KL+S
Sbjct: 517 TSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLIS 576

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            I+ R++++RD  RFH F+ G CSC DFW
Sbjct: 577 LIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 207/415 (49%), Gaps = 36/415 (8%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           L+  C S ++ +QI    + S       +++LI+F   S  ++ +  +R LF  +  P+I
Sbjct: 37  LISKCNSERELMQIQAYAIKSHQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDI 96

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            I+N++ RGYSRS +P E   L+  +L   ++ P+N+TFP +L +CA   + + G Q+HC
Sbjct: 97  VIFNSIARGYSRSTNPLEVFNLFVEILEDDLL-PDNYTFPSLLKACAVAKALEEGRQLHC 155

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
             +K G++ ++++   LI+ Y+    ++ A  VF+  +   +V YN +I GYA+   P  
Sbjct: 156 LSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNE 215

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           AL LFR+MQ   ++P+  T +++ S+C  L    +GK  H    K+  C    + + TA+
Sbjct: 216 ALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFC--KYVKVNTAL 273

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+M+AKCG ++ A  +F  M   K T AWS+MI  Y   G+ E                 
Sbjct: 274 IDMFAKCGSLDDAVSIFENMRY-KDTQAWSAMIVAYANHGQAE----------------- 315

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                          ++ +F +M S  + PDE+T + +L AC   G ++ G+      + 
Sbjct: 316 --------------NSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVH 361

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
                 +I    +++D+  + G ++ A     K+P +  T  L+  +++  + H 
Sbjct: 362 EFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPIS-PTPMLWRILLAACSSHN 415



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 159/310 (51%), Gaps = 9/310 (2%)

Query: 4   LVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLF 59
           L+ ++ +  +LL++C   K+L++  Q+H   +  G++ ++     LI+ +  + C++ + 
Sbjct: 127 LLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMY--TECED-VD 183

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
            +R +F +I  P +  +N ++ GY+R + P EAL L+  M  K +  PN  T   VL+SC
Sbjct: 184 AARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNL-KPNEITLLSVLSSC 242

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A L S   G  IH +  K G    + +  ALI  ++  G +++A  +FE    +D  +++
Sbjct: 243 ALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWS 302

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I  YA   +   ++ +F +M+   +QPD  TF+ + +AC+       G+++ + +   
Sbjct: 303 AMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHE 362

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G V S +    +++++  + G +  A      + +S +   W  +++  +    +E A 
Sbjct: 363 FGIVPS-IKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAE 421

Query: 300 QLFDQMDQRD 309
           ++ +++ + D
Sbjct: 422 KVSERILELD 431


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/429 (47%), Positives = 294/429 (68%), Gaps = 5/429 (1%)

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           GK + A  LF +M  RD+VSW +M++ Y+Q G  ++AL LF +M ++G+ P E T+V++L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC  LGALD G  LH  YI +     N  + TA++DMYAKCG I  A  VF  +    K
Sbjct: 222 SACAHLGALDKGLHLHT-YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES--K 278

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
            V  +N+II+G+A HG  + +  +F+EM+  G++P+ +TFV +L ACSH G+V+EG++  
Sbjct: 279 DVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLL 338

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           + M + YGI+P++EHYGC++DLLAR G L+EA  LI +MP + N     ALL  CR+H N
Sbjct: 339 DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGN 398

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
            ++GE+ G++L++L+P H   Y+LLSN+ A   +W++AR+VR LM  +GI K PG S IE
Sbjct: 399 FELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 458

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQVVFDVDEEEKETVVSY 650
             G +HRF+A   SHP++ +I   L ++  +LKSA G+  +T  V+ D++EE+KE  +  
Sbjct: 459 LKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPV 518

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEKLA+A+GL++  SKE IRI KNLR+C DCH   KL+S++Y REI+VRD  RFH F+ 
Sbjct: 519 HSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFED 578

Query: 711 GNCSCMDFW 719
           G CSC+DFW
Sbjct: 579 GECSCLDFW 587



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 38/280 (13%)

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           + FG  ++A  +F     RD+VS+N+++  YAQ  +P  AL LF +M+   ++P   T V
Sbjct: 159 NTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV 218

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
           ++ SAC  L    + K  H   Y N   +  N ++ TA+++MYAKCG +++A +VF+ M 
Sbjct: 219 SLLSACAHLG--ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM- 275

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
            SK   AW+++I+G    G ++ A++LF +M +                           
Sbjct: 276 ESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKE--------------------------- 308

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
                G+ P+++T VA+L AC   G +D G++L      +      +     VID+ A+ 
Sbjct: 309 ----AGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARA 364

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG---LGE 431
           G ++ A+ +   +P      +L  +++ G   HG   LGE
Sbjct: 365 GLLEEAMELIGTMPMEPNPCAL-GALLGGCRIHGNFELGE 403



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LFS++   ++  WN+++  Y++   P EAL L+  M + G V P   T   +L++CA L 
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHLG 228

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G  +H +I    +E +  +  AL+  Y+  G I+ A +VF    ++D++++NT+I 
Sbjct: 229 ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIA 288

Query: 184 GYA---QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           G A    VKE   A  LF++M+++ ++P+  TFVAM SAC+       G++        L
Sbjct: 289 GMAIHGHVKE---AQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKL-------L 338

Query: 241 GCVGSNMLLKT------AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            C+ S+  ++        VI++ A+ GL+  A  +  TM M  +  A  +++ G    G 
Sbjct: 339 DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGN 398

Query: 295 IE 296
            E
Sbjct: 399 FE 400


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/649 (35%), Positives = 366/649 (56%), Gaps = 48/649 (7%)

Query: 76  WNT-LMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVL--NSCARLSSFKSGCQI 131
           WN+ ++  +      Q  L+L+ S  L +   +P       ++  NSC  +S+ +   +I
Sbjct: 5   WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCR---EI 61

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H  + K  L  D FI + L+  Y+  GY  +A K+F+    +DLVS+N+LI+G+++    
Sbjct: 62  HARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHM 121

Query: 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
               +   K + S ++P+  T ++M SAC    D   GK  H    K    VG  + +K 
Sbjct: 122 SLTAFYTMKFEMS-VKPNEVTILSMISACNGALDA--GKYIHGFGIK----VGGTLEVKV 174

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A                              +S+I+ Y + G +  A +LF+ +   + V
Sbjct: 175 A------------------------------NSLINMYGKSGDLTSACRLFEAIPDPNTV 204

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           SW ++I+     G   + ++ F KM  LGI  DE T++A+L+AC+ LG     + +H   
Sbjct: 205 SWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLM 264

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
                FG  I + TA++D YAK G +  +  VF ++         + ++++G A HGLG 
Sbjct: 265 F-CTGFGAKITIATALLDTYAKLGRLSASYGVFTEV--GFADRVAWTAMLAGYAAHGLGR 321

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCM 490
            +I +F  M   GL+PD VTF  +L ACSH GLV EGK +F  M   YGI+P+++HY CM
Sbjct: 322 EAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCM 381

Query: 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550
           VDLL R G L++AY +IQ+MP + N+ +W ALL ACR+H N ++G+   + L+++EP   
Sbjct: 382 VDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDP 441

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
            +Y++LSNM + +  W++A +VR L+ + G+++ PG+S IE+    H F    +SHP+T+
Sbjct: 442 RNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETE 501

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETI 670
           +I   L+++  K++ AGY   T  V+ DV+EE KE +++ HSEKLA+AFGL+ S+  E +
Sbjct: 502 KIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEAL 561

Query: 671 RITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            ITKNLRICGDCH   KL+S I +R I++RD  RFH F  G CSC D+W
Sbjct: 562 IITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 202/474 (42%), Gaps = 86/474 (18%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           S+LL  + SC S+    +IH ++  S L        QL++ +   G      +   LF  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALK---LFDD 99

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + ++  WN+L+ G+SR      +L  + +M  +  V PN  T   ++++C    +  +
Sbjct: 100 MPHKDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDA 155

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH   IK G   ++ + N+LI+ Y   G + +A ++FE     + VS+N++I   AQ
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIA--AQ 213

Query: 188 VKEPCP--ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV-- 243
           V   C    +  F KM+   I+ D  T +A+  AC  L   ++ +  H +++    C   
Sbjct: 214 VTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMF----CTGF 269

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           G+ + + TA+++ YAK G ++ +  VF+ +G +    AW++M++GY   G    A +LF+
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRV-AWTAMLAGYAAHGLGREAIKLFE 328

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
            M  +                               G+ PD VT   +L AC   G ++ 
Sbjct: 329 SMANK-------------------------------GLEPDHVTFTHLLSACSHSGLVNE 357

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK       E       +   + ++D+  +CG ++ A  V   +P               
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMP--------------- 402

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
                                ++P+   +  +L AC   G +E GK+  E ++N
Sbjct: 403 ---------------------MEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 160/368 (43%), Gaps = 21/368 (5%)

Query: 10  SLLALLESCK-SLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           ++L+++ +C  +L     IHG  +  G    +  ++ LI+ +  SG      R   LF  
Sbjct: 141 TILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACR---LFEA 197

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I +PN   WN+++     +   +E +  +  M   GI   +  T   +L +C  L   K 
Sbjct: 198 IPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI-EQDEGTILALLQACLHLGVGKL 256

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              IH  +   G    + I  AL+  Y+  G ++ ++ VF      D V++  ++ GYA 
Sbjct: 257 AESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAA 316

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ LF  M +  ++PD  TF  + SAC+       GK +  V+ +  G +   +
Sbjct: 317 HGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYG-IEPRV 375

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ--- 304
              + ++++  +CGL+N A  V   M M  +   W +++      G IE  +++ +    
Sbjct: 376 DHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M+  D  ++  + + YS    +  A ++   ++  G           L+   G  ++++G
Sbjct: 436 MEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERG-----------LKRTPGYSSIEYG 484

Query: 365 KRLHQQYI 372
            + H  ++
Sbjct: 485 NKNHHFFV 492



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 93/177 (52%), Gaps = 15/177 (8%)

Query: 1   MKRLVLEHS--SLLALLESCKSL---KQALQIHGQIVHSGLNHHIS-SSQLISFFALSGC 54
           M+RL +E    ++LALL++C  L   K A  IHG +  +G    I+ ++ L+  +A  G 
Sbjct: 229 MRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLG- 287

Query: 55  KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
              L  S  +F+++   +   W  ++ GY+     +EA+ L+ SM +KG+  P++ TF  
Sbjct: 288 --RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGL-EPDHVTFTH 344

Query: 115 VLNSCAR---LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           +L++C+    ++  KS   +   +  +G+E  +   + ++      G +N+A++V +
Sbjct: 345 LLSACSHSGLVNEGKSYFNVMSEV--YGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQ 399


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/694 (35%), Positives = 381/694 (54%), Gaps = 48/694 (6%)

Query: 21  LKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78
           LK+  ++HG ++ +GL   +    + L++ +A  G    +  +R +F  +   +   WN+
Sbjct: 49  LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCG---SIADARRVFCFMMEKDSVSWNS 105

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++ G  ++    EA+  Y SM    I+ P +FT    L+SCA L   K G QIH   +K 
Sbjct: 106 MITGLDQNGCFIEAVERYQSMRRHEIL-PGSFTLISSLSSCASLKWAKLGQQIHGESLKL 164

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP-ALWL 197
           G++ ++ + NAL+  Y+  GY+N   K+F      D VS+N++I   A  +   P A+  
Sbjct: 165 GIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVAC 224

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           F     +  + +  TF ++ SA + L+   +GKQ H +  K    +      + A+I  Y
Sbjct: 225 FLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKY--NIADEATTENALIACY 282

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMI 317
            KCG M+  E++FS M                                ++RD V+W +MI
Sbjct: 283 GKCGEMDGCEKIFSRMS-------------------------------ERRDDVTWNSMI 311

Query: 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
           SGY      ++AL+L   M   G   D      VL A   +  L+ G  +H   +     
Sbjct: 312 SGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR-ACL 370

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             ++ + +A++DMY+KCG +D AL  F  +P  ++    +NS+ISG A+HG GE ++ +F
Sbjct: 371 ESDVVVGSALVDMYSKCGRLDYALRFFNTMP--VRNSYSWNSMISGYARHGQGEEALKLF 428

Query: 438 REMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
             M+L G   PD VTFV VL ACSH GL+EEG + FESM + YG+ P++EH+ CM DLL 
Sbjct: 429 ANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLG 488

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAAC-RLH-RNAKIGEIAGQKLLDLEPDHGAHY 553
           R G LD+    I  MP   N +IWR +L AC R + R A++G+ A + L  LEP++  +Y
Sbjct: 489 RAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNY 548

Query: 554 VLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIE 613
           VLL NM A   RWE+  + RK M D+ ++K  G+S++     +H F+A  KSHP T  I 
Sbjct: 549 VLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIY 608

Query: 614 LMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE-TIRI 672
             LK++  K++ AGYVP T   ++D+++E KE ++SYHSEKLA+AF L   RS    IRI
Sbjct: 609 KKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRI 668

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            KNLR+CGDCH AFK +S+I  R+I++RD+ R+ 
Sbjct: 669 MKNLRVCGDCHSAFKYISKIEGRQIILRDSNRYE 702



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 202/455 (44%), Gaps = 42/455 (9%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF---PFVLNSCARLSSFKSGCQIHCHII 136
           M G  R    +EA  L+  M S   VSP ++      F   S A     K G ++H H+I
Sbjct: 1   MVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVI 60

Query: 137 KFGL-EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
             GL +F + I N L++ Y+  G I +A +VF   + +D VS+N++I G  Q      A+
Sbjct: 61  TTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAV 120

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
             ++ M+   I P +FT ++  S+C  L   ++G+Q H    K LG +  N+ +  A++ 
Sbjct: 121 ERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLK-LG-IDLNVSVSNALMT 178

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           +YA+ G +N   ++FS+                                M + D VSW +
Sbjct: 179 LYAETGYLNECRKIFSS--------------------------------MPEHDQVSWNS 206

Query: 316 MISGY-SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374
           +I    S      +A+  F      G   + +T  +VL A   L   + GK++H   ++ 
Sbjct: 207 IIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKY 266

Query: 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSI 434
            +         A+I  Y KCG +D    +F ++ +    V+ +NS+ISG   + L   ++
Sbjct: 267 NI-ADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVT-WNSMISGYIHNELLAKAL 324

Query: 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494
            +   M   G + D   + TVL A +    +E G +     +   ++  +     +VD+ 
Sbjct: 325 DLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMY 384

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           ++ GRLD A     +MP   NS  W ++++    H
Sbjct: 385 SKCGRLDYALRFFNTMPV-RNSYSWNSMISGYARH 418


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/764 (31%), Positives = 397/764 (51%), Gaps = 112/764 (14%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLN-HHISSSQLISFFALSGCKNGLFRSRILFS 66
           +SS+L L    KSL    ++H  I  + +    +   +L+S +A  G    L   R +F 
Sbjct: 102 YSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCG---DLKEGRRVFD 158

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            ++  N+++WN                                    F+++  A++  FK
Sbjct: 159 TMEKKNVYLWN------------------------------------FMVSEYAKIGDFK 182

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
               +   +++ G+E                    +A ++F+    RD++S+N++I+GY 
Sbjct: 183 ESICLFKIMVEKGIEGK---------------RPESASELFDKLCDRDVISWNSMISGYV 227

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
                   L ++++M    I  D  T +++   C       +GK  H++  K+       
Sbjct: 228 SNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKST--FERR 285

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +     +++MY+KCG ++ A RVF  MG  ++  +W+SMI+GYTR+G+ + A +L  QM+
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQME 344

Query: 307 QR----DLVSWT-----------------------------------AMISGYSQVGGFS 327
           +     D+V+ T                                   A++  Y++ G   
Sbjct: 345 KEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMD 404

Query: 328 QALELFGKMESLGI----------HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF 377
            A  +F  M    I           PD  TM  +L AC  L AL+ GK +H  YI    +
Sbjct: 405 GANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHG-YILRNGY 463

Query: 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437
             +  +  A++D+Y KCG +  A  +F  IP   K +  +  +ISG   HG G  +IA F
Sbjct: 464 SSDRHVANALVDLYVKCGVLGLARLLFDMIPS--KDLVSWTVMISGYGMHGYGNEAIATF 521

Query: 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLAR 496
            EM   G++PD V+F+++L ACSH GL+E+G +FF  M N + I+P++EHY CMVDLL+R
Sbjct: 522 NEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSR 581

Query: 497 DGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556
            G L +AY  I+++P   ++ IW ALL  CR++ + ++ E   +++ +LEP++  +YVLL
Sbjct: 582 TGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641

Query: 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA-SKKSHPQTKEIELM 615
           +N+ AE  +WEE +++R+ +   G++K PG S+IE  G ++ F++ +  SHP +K+IE +
Sbjct: 642 ANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESL 701

Query: 616 LKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKN 675
           LK M  K+K  GY P T   + + DE +KE  +  HSEKLA+AFGL+    ++T+R+TKN
Sbjct: 702 LKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKN 761

Query: 676 LRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           LR+CGDCH   K +S+  RREI++RD+ RFH FK G CSC  FW
Sbjct: 762 LRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 51/267 (19%)

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            R +  + A I  + Q+G    A+EL    +   +     T  +VL+ C G  +L  GK+
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKK 120

Query: 367 LHQQYIENVVF---------------------GR---------NIFLTTAVIDMYAKCGS 396
           +H     N V                      GR         N++L   ++  YAK G 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 397 IDTALSVFY---------KIPKNL---------KTVSLFNSIISGLAQHGLGETSIAVFR 438
              ++ +F          K P++          + V  +NS+ISG   +GL E  + +++
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498
           +M  +G+  D  T ++VL  C++ G +  GK      +    + ++     ++D+ ++ G
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAA 525
            LD A  + + M  + N V W +++A 
Sbjct: 301 DLDGALRVFEKMG-ERNVVSWTSMIAG 326


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/718 (33%), Positives = 398/718 (55%), Gaps = 51/718 (7%)

Query: 11  LLALLESCK---SLKQALQIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILF 65
           L A L+SC     L+    +H ++V SG     +  ++ LI+ +  S C +     R LF
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMY--SHCADVPSAVR-LF 76

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             +  PN+  W TL+ G +++   ++AL  ++SM   G+V P  F       + A L++ 
Sbjct: 77  DAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLV-PTQFALSSAARAAAALAAR 135

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G Q+HC  ++ G + +LF+ + L   YS  G +  A +VF+    +D V++  +I+GY
Sbjct: 136 HAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGY 195

Query: 186 AQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           A+      A+  FR M+ +  +  D     ++ SA   L D  + +  H+ V K+     
Sbjct: 196 AKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKS--GFE 253

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
             + ++ A+ +MYAK   M+ A RV                                  +
Sbjct: 254 QEVAVRNALTDMYAKAADMDNAARVV---------------------------------K 280

Query: 305 MDQRDL--VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
           +DQ  L  VS T++I GY +     +AL +F ++   G+ P+E T  ++++ C     L+
Sbjct: 281 IDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLE 340

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
            G +LH + I+  +   + F+++ ++DMY KCG I  ++ +F +I     T   +N+ I+
Sbjct: 341 QGAQLHAEVIKTSLIS-DSFVSSTLLDMYGKCGLISLSIQLFKEI--EYHTDIAWNAAIN 397

Query: 423 GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIK 481
            LAQHG G  +I  F  M   G++P+ +TFV++L ACSH GLV+EG ++F SM ++ GI+
Sbjct: 398 VLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIE 457

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541
           P+ EHY C++D+  R GRLDEA   I  MP   N+  W +LL ACR+  N ++GEIA   
Sbjct: 458 PKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADN 517

Query: 542 LLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA 601
           ++ LEPD+   +V LS + A   +WE+ + VRKLM D+ I+K PG+S+++ N   H F +
Sbjct: 518 MMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGS 577

Query: 602 SKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGL 661
              SHPQ ++I   L+++  ++K  GYVP+T  +  ++++  K+ ++ YHSE++A+AF L
Sbjct: 578 EDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFAL 637

Query: 662 INSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           I+  + + I + KNLRIC DCH A K +S++  R+I+VRD  RFH F KG CSC D+W
Sbjct: 638 ISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 342/606 (56%), Gaps = 38/606 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L  CA+      G   H  I+  GL+ DL   N LI+ YS  G ++ A +VF+   +R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           LVS+NT+I    Q  E   AL L  +MQ        FT  ++  AC         +  HA
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
              K    +  N+ + TA++++YAKCGLM  A  VF                        
Sbjct: 190 FAIK--AAMDLNVFVATALLDVYAKCGLMKDAVCVF------------------------ 223

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
                   + M  R +V+W++M +GY Q   + QAL LF K    G+  D+  M +V+ A
Sbjct: 224 --------ESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICA 275

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C GL A+  GK+++   +    F  NIF+ +++IDMYAKCG I+ +  VF  + K  + V
Sbjct: 276 CAGLAAMIEGKQMNA-LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEK--RNV 332

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            L+N++ISGL++H      + +F +M+ MGL P+ VTFV+VL AC H GLV +G+++F+ 
Sbjct: 333 VLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDL 392

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   + + P + HY CMVD L+R G++ EAY LI  +P++A++ +W +LLA+CR H N +
Sbjct: 393 MTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLE 452

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           + E+A +KL D+EP +  +Y+LLSNM A   +W+E  ++RKL+ +S ++K  G S+IE  
Sbjct: 453 LAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIK 512

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H F+  +++HP+  EI   L ++  +L+  GY   T   +  V E  K+ ++ +HSE
Sbjct: 513 DKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSE 572

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA   GL+       IRI KNLRICGDCH   KL S+ + R+++VRD  RFH FK G C
Sbjct: 573 KLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCC 632

Query: 714 SCMDFW 719
           SC DFW
Sbjct: 633 SCGDFW 638



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 213/421 (50%), Gaps = 44/421 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L L    K L Q    H QI+  GL   + +S+ LI+ +  S C +  F +R +F ++ 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMY--SKCGSVDF-ARQVFDEMP 126

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP-NNFTFPFVLNSCARLSSFKSG 128
           + ++  WNT++   +++    EAL L   M  +G  +P + FT   VL +CA   +  S 
Sbjct: 127 SRSLVSWNTMIGSLTQNGEENEALDLLLQMQREG--TPFSEFTISSVLCACAAKCAL-SE 183

Query: 129 CQ-IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           CQ +H   IK  ++ ++F+  AL+  Y+  G + +A  VFE    R +V+++++  GY Q
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            +    AL LFRK  ++ ++ D F   ++  AC  L     GKQ +A++ K+  C  SN+
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFC--SNI 301

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + +++I+MYAKCG +  + +VF  +   ++   W++MISG +R      AR L      
Sbjct: 302 FVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSR-----HARSL------ 349

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                               + + LF KM+ +G+ P++VT V+VL AC  +G +  G++ 
Sbjct: 350 --------------------EVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKY 389

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
                +      N+F  + ++D  ++ G I  A  +  K+P N  + S++ S+++    H
Sbjct: 390 FDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFN-ASASMWGSLLASCRTH 448

Query: 428 G 428
           G
Sbjct: 449 G 449



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 154/301 (51%), Gaps = 12/301 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRI-LFS 66
           SS+L    +  +L +   +H   + + ++ ++  ++ L+  +A    K GL +  + +F 
Sbjct: 169 SSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYA----KCGLMKDAVCVFE 224

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            + + ++  W+++  GY +++  ++AL L+      G+   + F    V+ +CA L++  
Sbjct: 225 SMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGL-KHDQFLMSSVICACAGLAAMI 283

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q++  + K G   ++F+ ++LI  Y+  G I  ++KVF     R++V +N +I+G +
Sbjct: 284 EGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLS 343

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +       + LF KMQ   + P+  TFV++ SAC  +   R G+++  ++ K    +  N
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHH-LAPN 402

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLF 302
           +   + +++  ++ G +  A  + S +  + S + W S+++     G +E     A++LF
Sbjct: 403 VFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLF 462

Query: 303 D 303
           D
Sbjct: 463 D 463


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/706 (34%), Positives = 378/706 (53%), Gaps = 44/706 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQ 67
           S+LL++L      K    IHG +V  G +  +   + L+  +A +G       + ++F Q
Sbjct: 248 STLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRS---VEANLVFKQ 304

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   ++  WN+LM  +       +AL L  SM+S G  S N  TF   L +C     F+ 
Sbjct: 305 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG-KSVNYVTFTSALAACFTPDFFEK 363

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H  ++  GL ++  I NAL+  Y   G ++ + +V      RD+V++N LI GYA+
Sbjct: 364 GRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAE 423

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYKNLGCVGSN 246
            ++P  AL  F+ M+   +  +  T V++ SAC    D    GK  HA +        S+
Sbjct: 424 DEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVS--AGFESD 481

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             +K ++I MYAKCG                                 +  ++ LF+ +D
Sbjct: 482 EHVKNSLITMYAKCG--------------------------------DLSSSQDLFNGLD 509

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            R++++W AM++  +  G   + L+L  KM S G+  D+ +    L A   L  L+ G++
Sbjct: 510 NRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ 569

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH   ++ + F  + F+  A  DMY+KCG I   + +    P   +++  +N +IS L +
Sbjct: 570 LHGLAVK-LGFEHDSFIFNAAADMYSKCGEIGEVVKML--PPSVNRSLPSWNILISALGR 626

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           HG  E   A F EM  MG+KP  VTFV++L ACSHGGLV++G  +++ +  ++G++P +E
Sbjct: 627 HGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIE 686

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           H  C++DLL R GRL EA   I  MP   N ++WR+LLA+C++H N   G  A + L  L
Sbjct: 687 HCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKL 746

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           EP+  + YVL SNM A T RWE+   VRK M    I+K    S+++    +  F    ++
Sbjct: 747 EPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRT 806

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           HPQT EI   L+D+   +K +GYV +T Q + D DEE+KE  +  HSE+LALA+ L+++ 
Sbjct: 807 HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTP 866

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
              T+RI KNLRIC DCH  +K +S +  R I++RD  RFH F++G
Sbjct: 867 EGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 235/517 (45%), Gaps = 56/517 (10%)

Query: 21  LKQALQIHGQIVHSGL--NHHISSS--QLISFFALSGCKNGLFRSRILFSQIDNPNIFIW 76
            ++ +Q+HG +  SGL  + ++S++   L   + L  C      SR +F ++ + N+  W
Sbjct: 58  FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC------SRKVFEEMPDRNVVSW 111

Query: 77  NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136
            +LM GYS    P+E + +Y  M  +G V  N  +   V++SC  L     G QI   ++
Sbjct: 112 TSLMVGYSDKGEPEEVIDIYKGMRGEG-VGCNENSMSLVISSCGLLKDESLGRQIIGQVV 170

Query: 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ---VKEPCP 193
           K GLE  L + N+LI      G ++ A+ +F+    RD +S+N++   YAQ   ++E   
Sbjct: 171 KSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFR 230

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
              L R+  D   + ++ T   + S    ++  + G+  H +V K               
Sbjct: 231 IFSLMRRFHD---EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK--------------- 272

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
                              MG        ++++  Y   G+   A  +F QM  +DL+SW
Sbjct: 273 -------------------MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 313

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
            ++++ +   G    AL L   M S G   + VT  + L AC      + G+ LH   + 
Sbjct: 314 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVV 373

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
           + +F  N  +  A++ MY K G +  +  V  ++P+  + V  +N++I G A+    + +
Sbjct: 374 SGLF-YNQIIGNALVSMYGKIGEMSESRRVLLQMPR--RDVVAWNALIGGYAEDEDPDKA 430

Query: 434 IAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492
           +A F+ M + G+  + +T V+VL AC   G L+E GK     +++ G +        ++ 
Sbjct: 431 LAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLIT 490

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           + A+ G L  +  L   +  + N + W A+LAA   H
Sbjct: 491 MYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 526



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 204/454 (44%), Gaps = 46/454 (10%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS-FKSGCQIHCH 134
           WNT+M G  R     E +  +  M   GI  P++F    ++ +C R  S F+ G Q+H  
Sbjct: 9   WNTMMSGIVRVGLYLEGMEFFRKMCDLGI-KPSSFVIASLVTACGRSGSMFREGVQVHGF 67

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           + K GL  D+++  A++H Y ++G ++ + KVFE    R++VS+ +L+ GY+   EP   
Sbjct: 68  VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV 127

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           + +++ M+   +  +  +   + S+C  L D  +G+Q    V K+   + S + ++ ++I
Sbjct: 128 IDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS--GLESKLAVENSLI 185

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314
           +M    G ++ A  +F  M   + T +W+S+ + Y + G IE + ++F  M +       
Sbjct: 186 SMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIEESFRIFSLMRR------- 237

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD---FGKRLHQQY 371
                                      H DEV    V      LG +D   +G+ +H   
Sbjct: 238 --------------------------FH-DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 270

Query: 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGE 431
           ++ + F   + +   ++ MYA  G    A  VF ++P   K +  +NS+++     G   
Sbjct: 271 VK-MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPT--KDLISWNSLMASFVNDGRSL 327

Query: 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
            ++ +   M   G   + VTF + L AC      E+G+     ++  G+         +V
Sbjct: 328 DALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALV 387

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +  + G + E+  ++  MP   + V W AL+  
Sbjct: 388 SMYGKIGEMSESRRVLLQMPR-RDVVAWNALIGG 420



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 39/354 (11%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQ 231
           R+ VS+NT+++G  +V      +  FRKM D  I+P +F   ++ +AC       R G Q
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ 63

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H  V K+ G + S++ + TA++++Y   GL++ +                         
Sbjct: 64  VHGFVAKS-GLL-SDVYVSTAILHLYGVYGLVSCS------------------------- 96

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
                  R++F++M  R++VSWT+++ GYS  G   + ++++  M   G+  +E +M  V
Sbjct: 97  -------RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV 149

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           + +C  L     G+++  Q +++ +  + + +  ++I M    G++D A  +F ++ +  
Sbjct: 150 ISSCGLLKDESLGRQIIGQVVKSGLESK-LAVENSLISMLGSMGNVDYANYIFDQMSER- 207

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            T+S +NSI +  AQ+G  E S  +F  M     + +  T  T+L    H    + G+  
Sbjct: 208 DTIS-WNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGI 266

Query: 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              ++  G    +     ++ + A  GR  EA  + + MP   + + W +L+A+
Sbjct: 267 HGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP-TKDLISWNSLMAS 319



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 115/225 (51%), Gaps = 11/225 (4%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL-DF 363
           M  R+ VSW  M+SG  +VG + + +E F KM  LGI P    + +++ AC   G++   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G ++H  ++       +++++TA++ +Y   G +  +  VF ++P   + V  + S++ G
Sbjct: 61  GVQVH-GFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPD--RNVVSWTSLMVG 117

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGI 480
            +  G  E  I +++ M   G+  +  +   V+ +C   GL+++   G+Q    ++  G+
Sbjct: 118 YSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESLGRQIIGQVVKSGL 174

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           + ++     ++ +L   G +D A  +   M  + +++ W ++ AA
Sbjct: 175 ESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAA 218


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 343/606 (56%), Gaps = 38/606 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L  CA+      G   H  I+  GL+ DL   N LI+ YS  G ++ A +VF+   +R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           LVS+NT+I    Q  E   AL L  +MQ        FT  ++  AC         +  HA
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
              K    +  N+ + TA++++YAKCGLM  A  VF                        
Sbjct: 190 FAIK--AAMDLNVFVATALLDVYAKCGLMKDAVCVF------------------------ 223

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
                   + M  R +V+W++M +GY Q   + QAL LF K    G+  D+  M +V+ A
Sbjct: 224 --------ESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICA 275

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C GL A+  GK+++   +    F  NIF+ +++IDMYAKCG I+ +  VF  + K  + V
Sbjct: 276 CAGLAAMIEGKQVNA-LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEK--RNV 332

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            L+N++ISGL++H      + +F +M+ MGL P+ VTFV+VL AC H GLV++G+++F+ 
Sbjct: 333 VLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDL 392

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   + + P + HY CMVD L+R G++ EAY LI  +P++A++ +W +LLA+CR H N +
Sbjct: 393 MTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLE 452

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           + E+A +KL D+EP +  +Y+LLSNM A   +W+E  ++RKL+ +S ++K  G S+IE  
Sbjct: 453 LAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIK 512

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
             +H F+  +++HP+  EI   L ++  +L+  GY   T   +  V E  K+ ++ +HSE
Sbjct: 513 DKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSE 572

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           KLA   GL+       IRI KNLRICGDCH   KL S+ + R+++VRD  RFH FK G C
Sbjct: 573 KLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCC 632

Query: 714 SCMDFW 719
           SC DFW
Sbjct: 633 SCGDFW 638



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 213/421 (50%), Gaps = 44/421 (10%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQID 69
           +L L    K L Q    H QI+  GL   + +S+ LI+ +  S C +  F +R +F ++ 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMY--SKCGSVDF-ARQVFDEMP 126

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSP-NNFTFPFVLNSCARLSSFKSG 128
           + ++  WNT++   +++    EAL L   M  +G  +P + FT   VL +CA   +  S 
Sbjct: 127 SRSLVSWNTMIGSLTQNGEENEALDLLLQMQREG--TPFSEFTISSVLCACAAKCAL-SE 183

Query: 129 CQ-IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           CQ +H   IK  ++ ++F+  AL+  Y+  G + +A  VFE    R +V+++++  GY Q
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
            +    AL LFRK  ++ ++ D F   ++  AC  L     GKQ +A++ K+  C  SN+
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFC--SNI 301

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
            + +++I+MYAKCG +  + +VF  +   ++   W++MISG +R      AR L      
Sbjct: 302 FVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSR-----HARSL------ 349

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRL 367
                               + + LF KM+ +G+ P++VT V+VL AC  +G +  G++ 
Sbjct: 350 --------------------EVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKY 389

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
                +      N+F  + ++D  ++ G I  A  +  K+P N  + S++ S+++    H
Sbjct: 390 FDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFN-ASASMWGSLLASCRTH 448

Query: 428 G 428
           G
Sbjct: 449 G 449



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 154/301 (51%), Gaps = 12/301 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRI-LFS 66
           SS+L    +  +L +   +H   + + ++ ++  ++ L+  +A    K GL +  + +F 
Sbjct: 169 SSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYA----KCGLMKDAVCVFE 224

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            + + ++  W+++  GY +++  ++AL L+      G+   + F    V+ +CA L++  
Sbjct: 225 SMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGL-KHDQFLMSSVICACAGLAAMI 283

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q++  + K G   ++F+ ++LI  Y+  G I  ++KVF     R++V +N +I+G +
Sbjct: 284 EGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLS 343

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
           +       + LF KMQ   + P+  TFV++ SAC  +   + G+++  ++ K    +  N
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHH-LAPN 402

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RARQLF 302
           +   + +++  ++ G +  A  + S +  + S + W S+++     G +E     A++LF
Sbjct: 403 VFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLF 462

Query: 303 D 303
           D
Sbjct: 463 D 463


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/619 (36%), Positives = 373/619 (60%), Gaps = 19/619 (3%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEF--DLFIRNALIHFYSIFGYINNAHKVF-EGS 170
            +L   A  S    G ++H  +   GL+     ++ NAL  FY+  G I  A K+F E  
Sbjct: 11  LLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIP 70

Query: 171 LA-RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
           L+ +D V + TL++ +++      ++ LF +M+   ++ D  + V +F  C +L D R G
Sbjct: 71  LSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFG 130

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +Q H V  K +G + S + +  A+++MY KCG ++  +R+F  +   KS  +W+ ++   
Sbjct: 131 EQGHGVAVK-MGFLTS-VKVCNALMDMYGKCGFVSEVKRIFQALE-EKSVVSWTVVLDTL 187

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTM 348
            +   ++R R++FD+M +R++V+WT M++GY   G   + LEL  +M    G   + VT+
Sbjct: 188 VKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTL 247

Query: 349 VAVLRACVGLGALDFGKRLHQQYIEN-VVFGRN-----IFLTTAVIDMYAKCGSIDTALS 402
            ++L AC   G L  G+ +H   ++  ++ G       + + TA++DMYAKCG+ID+++ 
Sbjct: 248 CSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIK 307

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + K  + V  +N++ SGLA HG G   I +F EM +  +KPD +TF  +L ACSH 
Sbjct: 308 VFRLMRK--RNVVTWNALFSGLAMHGKGRMVIDMFPEM-VREVKPDDLTFTALLSACSHL 364

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           G+V+EG + F S+  YG++P+++HY CMVD+L R GR++EA  L++ MP   N V+  +L
Sbjct: 365 GMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSL 424

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L +C +H   +I E   ++L+ + P H  + +L+SNM     R + A  +R  + + GI+
Sbjct: 425 LGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIR 484

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV--FDVD 640
           K PG S I  N ++HRF +  +SHP+TKE+ L L ++  +++SAGYVP+   +V   + D
Sbjct: 485 KIPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGD 544

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
            EEKE  +  HSEKLA+ FGL+ ++ +  + + KNLRIC DCH A K++S++Y REI++R
Sbjct: 545 LEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIR 604

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH FK G+CSC D+W
Sbjct: 605 DRNRFHQFKGGSCSCSDYW 623



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 123/260 (47%), Gaps = 12/260 (4%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
            GL R R +F ++   N+  W  ++ GY  +   +E L L   M+ +     N  T   +
Sbjct: 191 EGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSM 250

Query: 116 LNSCARLSSFKSGCQIHCHIIKFGL------EFD-LFIRNALIHFYSIFGYINNAHKVFE 168
           L++CA+  +   G  +H + +K  +       +D + +  AL+  Y+  G I+++ KVF 
Sbjct: 251 LSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFR 310

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
               R++V++N L +G A   +    + +F +M    ++PD  TF A+ SAC+ L     
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDE 369

Query: 229 G-KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           G + FH++ +  L      +     ++++  + G +  AE +   M +  +     S++ 
Sbjct: 370 GWRCFHSLQFYGL---EPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLG 426

Query: 288 GYTREGKIERARQLFDQMDQ 307
             +  GK+E A ++  ++ Q
Sbjct: 427 SCSVHGKLEIAERIKRELIQ 446


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/717 (34%), Positives = 406/717 (56%), Gaps = 49/717 (6%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFAL----SGCKNGLFRSRILF 65
           ++++ L +C     A ++  +I  S L     SS+L    AL    + C       RIL 
Sbjct: 286 TIVSALTACDGFSYA-KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL- 343

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
            Q++N ++  WN+L++GY ++   +EAL  ++ M++ G  S +  +   ++ +  RLS+ 
Sbjct: 344 RQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKS-DEVSMTSIIAASGRLSNL 402

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
            +G ++H ++IK G + +L + N LI  YS         + F     +DL+S+ T+I GY
Sbjct: 403 LAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGY 462

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVG 244
           AQ      AL LFR +    ++ D     ++  A + L    I K+ H  ++ K L    
Sbjct: 463 AQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL---- 518

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
            + +++  ++++Y KC  M  A RVF ++                  +GK          
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESI------------------KGK---------- 550

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
               D+VSWT+MIS  +  G  S+A+ELF +M   G+  D V ++ +L A   L AL+ G
Sbjct: 551 ----DVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKG 606

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           + +H  Y+    F     +  AV+DMYA CG + +A +VF +I +  K +  + S+I+  
Sbjct: 607 REIHC-YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER--KGLLQYTSMINAY 663

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
             HG G+ ++ +F +M    + PD ++F+ +L ACSH GL++EG+ F + M + Y ++P 
Sbjct: 664 GMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW 723

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            EHY C+VD+L R   + EA+  ++ M  +  + +W ALLAACR H   +IGEIA Q+LL
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLL 783

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           +LEP +  + VL+SN+ AE  RW +  +VR  M  SG++K PG S+IE +G +H+F A  
Sbjct: 784 ELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARD 843

Query: 604 KSHPQTKEIELMLKDMTMKL-KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
           KSHP++KEI   L ++T KL +  GYV +T  V+ +VDE EK  ++  HSE++A+A+GL+
Sbjct: 844 KSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLL 903

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            +  +  +RITKNLR+C DCH   KL+S+++RR+I++RDA RFH F+ G CSC D W
Sbjct: 904 RTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 218/454 (48%), Gaps = 48/454 (10%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILFSQI 68
           +LE C   +++ Q  Q+H +I  +  +  +   + +L+  +   G    L  +  +F ++
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCG---SLDDAEKVFDEM 142

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT-FPFVLNSCARLSSFKS 127
            +   F WNT++  Y  +  P  AL LY +M  +G+  P   + FP +L +CA+L   +S
Sbjct: 143 PDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV--PLGLSSFPALLKACAKLRDIRS 200

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-DLVSYNTLINGYA 186
           G ++H  ++K G     FI NAL+  Y+    ++ A ++F+G   + D V +N++++ Y+
Sbjct: 201 GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
              +    L LFR+M  +   P+++T V+  +AC   +  ++GK+ HA V K+     S 
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKS-STHSSE 319

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  A+I MY +CG M  AER+   M  +     W+S+I GY                 
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLIKGYV---------------- 362

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
                          Q   + +ALE F  M + G   DEV+M +++ A   L  L  G  
Sbjct: 363 ---------------QNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGME 407

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           LH   I++  +  N+ +   +IDMY+KC         F ++    K +  + ++I+G AQ
Sbjct: 408 LHAYVIKH-GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHD--KDLISWTTVIAGYAQ 464

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
           +     ++ +FR++    ++ D +   ++L A S
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 185/416 (44%), Gaps = 43/416 (10%)

Query: 89  PQEALVLYTSMLSKGI----VSPNNF---TFPFVLNSCARLSSFKSGCQIHCHIIKFGLE 141
           P   L  +  +L++      VS NN     F +VL  C +  +   G Q+H  I K    
Sbjct: 53  PSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPS 112

Query: 142 FDL-FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           F+L F+   L+  Y   G +++A KVF+    R   ++NT+I  Y    EP  AL L+  
Sbjct: 113 FELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWN 172

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M+   +     +F A+  AC +L D R G + H+++ K LG   S   +  A+++MYAK 
Sbjct: 173 MRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVK-LG-YHSTGFIVNALVSMYAKN 230

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
             ++ A R+F           W+S++S Y+  GK                          
Sbjct: 231 DDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK-------------------------- 264

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                  + LELF +M   G  P+  T+V+ L AC G      GK +H   +++      
Sbjct: 265 -----SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 319

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           +++  A+I MY +CG +  A  +  ++  N   V  +NS+I G  Q+ + + ++  F +M
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQM--NNADVVTWNSLIKGYVQNLMYKEALEFFSDM 377

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496
              G K D V+  +++ A      +  G +    ++ +G    ++    ++D+ ++
Sbjct: 378 IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 433



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 144/348 (41%), Gaps = 51/348 (14%)

Query: 188 VKEPCPALWLFRKMQDSCIQP----------DAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           V+ P P L  F  +     Q           +AF +V     C +      G+Q H+ ++
Sbjct: 50  VQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYV--LELCGKRRAVSQGRQLHSRIF 107

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K       + L    V  MY KCG ++ AE+V                            
Sbjct: 108 KTFPSFELDFLAGKLVF-MYGKCGSLDDAEKV---------------------------- 138

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
               FD+M  R   +W  MI  Y   G  + AL L+  M   G+     +  A+L+AC  
Sbjct: 139 ----FDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAK 194

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L  +  G  LH   ++ + +    F+  A++ MYAK   +  A  +F    +    V L+
Sbjct: 195 LRDIRSGSELHSLLVK-LGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAV-LW 252

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
           NSI+S  +  G    ++ +FREM + G  P+  T V+ L AC      + GK+   S+L 
Sbjct: 253 NSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK 312

Query: 478 YGIKPQMEHYGC--MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
                  E Y C  ++ +  R G++ +A  +++ M  +A+ V W +L+
Sbjct: 313 SSTHSS-ELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 2/175 (1%)

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL  C    A+  G++LH +  +        FL   ++ MY KCGS+D A  VF ++P  
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPD- 144

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            +T   +N++I     +G   +++A++  M + G+     +F  +L AC+    +  G +
Sbjct: 145 -RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSE 203

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               ++  G          +V + A++  L  A  L        ++V+W ++L++
Sbjct: 204 LHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSS 258


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 352/616 (57%), Gaps = 40/616 (6%)

Query: 106 SP-NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           SP N++ +  +L SC    + + G Q+H  + + G+ ++L +   L++FYS+   + NAH
Sbjct: 54  SPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAH 113

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            +F+     +L  +N LI  YA       A+ L+ +M +  ++PD FT   +  AC+ L+
Sbjct: 114 HLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALS 173

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
               G+  H  V ++      ++ +  A+++MYAKCG                       
Sbjct: 174 TIGEGRVIHERVIRS--GWERDVFVGAALVDMYAKCGC---------------------- 209

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
                     +  AR +FD++  RD V W +M++ Y+Q G   ++L L  +M + G+ P 
Sbjct: 210 ----------VVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPT 259

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           E T+V V+ +   +  L  G+ +H  +     F  N  + TA+IDMYAKCGS+  A  +F
Sbjct: 260 EATLVTVISSSADIACLPHGREIHG-FGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLF 318

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++ +  K V  +N+II+G A HGL   ++ +F  M +   +PD +TFV  L ACS G L
Sbjct: 319 ERLRE--KRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRGRL 375

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           ++EG+  +  M+ +  I P +EHY CMVDLL   G+LDEAY LI+ M    +S +W ALL
Sbjct: 376 LDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALL 435

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            +C+ H N ++ E+A +KL++LEPD   +YV+L+NM A++ +WE   ++R+LM D GI+K
Sbjct: 436 NSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKK 495

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
               S+IE    ++ FL+   SHP +  I   LK +   ++ AGYVP+T  V  DV+E+E
Sbjct: 496 NIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDE 555

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           K  +V  HSE+LA+AFGLI++     + ITKNLRIC DCH+A K +S+I  REI VRD  
Sbjct: 556 KTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVN 615

Query: 704 RFHLFKKGNCSCMDFW 719
           R+H F+ G CSC D+W
Sbjct: 616 RYHHFRHGLCSCGDYW 631



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 234/482 (48%), Gaps = 47/482 (9%)

Query: 8   HSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI 63
           H    +LLESC   K+L+   Q+H ++   G+ +++  +++L++F+++    N L  +  
Sbjct: 58  HYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVC---NSLRNAHH 114

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF +I   N+F+WN L+R Y+ +   + A+ LY  ML  G+  P+NFT PFVL +C+ LS
Sbjct: 115 LFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGL-KPDNFTLPFVLKACSALS 173

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G  IH  +I+ G E D+F+  AL+  Y+  G + +A  VF+  + RD V +N+++ 
Sbjct: 174 TIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLA 233

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YAQ   P  +L L  +M    ++P   T V + S+  ++     G++ H   +++    
Sbjct: 234 AYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRH--GF 291

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N  +KTA+I+MYAKCG + +A  +F  +   K   +W+++I+GY   G    A  LF+
Sbjct: 292 QYNDKVKTALIDMYAKCGSVKVACVLFERL-REKRVVSWNAIITGYAMHGLAVEALDLFE 350

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M +                                   PD +T V  L AC     LD 
Sbjct: 351 RMMKE--------------------------------AQPDHITFVGALAACSRGRLLDE 378

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G+ L+   + +      +   T ++D+   CG +D A  +  ++   +    ++ ++++ 
Sbjct: 379 GRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQM-DVMPDSGVWGALLNS 437

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
              H  G   +A     +L+ L+PD    +V +    +  G  E   +  + M++ GIK 
Sbjct: 438 CKTH--GNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKK 495

Query: 483 QM 484
            +
Sbjct: 496 NI 497


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/612 (36%), Positives = 349/612 (57%), Gaps = 39/612 (6%)

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           ++ +  +L SC    +   G Q+H      G+ ++  +   L+H Y++   + NA  +F+
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
               ++L  +N LI GYA       A+ L+ KM D  ++PD FT   +  AC+ L+    
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G+  H  V K+      ++ +  A+I+MYAKCG +  A RV                   
Sbjct: 167 GRSIHEYVIKS--GWERDLFVGAALIDMYAKCGCVMDAGRV------------------- 205

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                        FD++  RD V W +M++ Y+Q G   +++ L  +M + G+ P E T+
Sbjct: 206 -------------FDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATL 252

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           V V+ +   +  L +G+ +H  +     F  N  + TA+IDMYAKCGS+  AL++F ++ 
Sbjct: 253 VTVISSSADVACLPYGREIHG-FGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLR 311

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468
           +  K V  +N+II+G A HGL   ++ +F +M     +PD +TFV VL ACS G L++EG
Sbjct: 312 E--KRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEG 368

Query: 469 KQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACR 527
           +  +  M+ +YGI P ++HY CM+DLL   G+LDEAY LI++M    +S +W ALL +C+
Sbjct: 369 RALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCK 428

Query: 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587
           +H N ++ E+A +KL++LEPD   +YV+L+NM A++ +WE   ++R++M D  I+K    
Sbjct: 429 IHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIAC 488

Query: 588 SYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV 647
           S+IE    ++ FLA   SH  +  I   LK +   +  AGY P+T  V  DV+E+EK ++
Sbjct: 489 SWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSM 548

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           V  HSE+LA+AFGLI++     + ITKNLRIC DCH+A K +S+I  REI VRD  R+H 
Sbjct: 549 VCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHS 608

Query: 708 FKKGNCSCMDFW 719
           FK G CSC D W
Sbjct: 609 FKHGMCSCGDHW 620



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 241/485 (49%), Gaps = 53/485 (10%)

Query: 8   HSSLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRI 63
           H    +LL+SC   K+L    Q+H Q  H G+ ++   +++L+  +A+S   N L  +R 
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVS---NSLLNARN 103

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF +I   N+F+WN L+RGY+ +     A++LY  ML  G+  P+NFT PFVL +C+ LS
Sbjct: 104 LFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGL-RPDNFTLPFVLKACSALS 162

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +   G  IH ++IK G E DLF+  ALI  Y+  G + +A +VF+  + RD V +N+++ 
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLA 222

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
            YAQ   P  ++ L R+M  + ++P   T V + S+  ++     G++ H   +++    
Sbjct: 223 AYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRH--GF 280

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
            SN  +KTA+I+MYAKCG + +A  +F  +   K   +W+++I+GY   G    A  LFD
Sbjct: 281 QSNDKVKTALIDMYAKCGSVKVALALFERL-REKRVVSWNAIITGYAMHGLAVGALDLFD 339

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +M + D                                 PD +T V VL AC     LD 
Sbjct: 340 KMRKED--------------------------------RPDHITFVGVLAACSRGRLLDE 367

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT---VSLFNSI 420
           G+ L+   + +      +   T +ID+   CG +D A    Y + +N+       ++ ++
Sbjct: 368 GRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEA----YDLIRNMSVKPDSGVWGAL 423

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYG 479
           ++    H  G   +A     +L+ L+PD    +V +    +  G  E  ++  + M++  
Sbjct: 424 LNSCKIH--GNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKR 481

Query: 480 IKPQM 484
           IK  +
Sbjct: 482 IKKNI 486


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 260/760 (34%), Positives = 396/760 (52%), Gaps = 97/760 (12%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
            L L+    +L Q  Q H QI+ +GL++ + +   ++   LS  K  + ++ +LFS I N
Sbjct: 13  FLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTH-KLSHLK-AIDQASLLFSTIPN 70

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           P++F++N L+R +S ++SP  A+ LYT +     + P+NFT+ FV++  + L        
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHA 130

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
                I  G   DLF+ +A++  Y  F  +  A KVF+G L RD V +NT+++G   VK 
Sbjct: 131 HS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGL--VKN 185

Query: 191 PC--PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG--SN 246
            C   A+ +F  M    I  D+ T  A+     EL D  +G     +  K    VG  S+
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMK----VGFHSH 241

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
             + T +  +Y+KCG                                +IE AR LF Q+ 
Sbjct: 242 AYVITGLACLYSKCG--------------------------------EIETARLLFGQIG 269

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           Q DLVS+ AMISGY+       ++ LF ++   G   +  ++V ++      G L   + 
Sbjct: 270 QPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRC 329

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H  +        N  ++TA+  +Y++   I++A  +F +  +  K+++ +N++ISG AQ
Sbjct: 330 IHG-FCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSE--KSLASWNAMISGYAQ 386

Query: 427 HGLGETSIAVFREMELMGLKPD-------------------------------------- 448
           +GL E +I++F+EM+   ++P+                                      
Sbjct: 387 NGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFM 446

Query: 449 --------GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGR 499
                   GVTF++VL ACSH GLV EG + F SM+ ++G +P  EHY CMVDLL R G 
Sbjct: 447 LHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGN 506

Query: 500 LDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559
           LD+A   I+ MP +    +W ALL AC +H++A +  +A  KL +L+P +  +YVLLSN+
Sbjct: 507 LDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNI 566

Query: 560 LAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDM 619
            +    + EA  VR ++    + K PG + IE   TLH F +  +SHPQ   I  ML+ +
Sbjct: 567 YSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKL 626

Query: 620 TMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRIC 679
           T K++ AG+   T   + DV+EEEKE +V  HSEKLA+AFGLI S     IRI KNLR+C
Sbjct: 627 TGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVC 686

Query: 680 GDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            DCH A K +S+I  R I+VRDA RFH FK G CSC D+W
Sbjct: 687 LDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/549 (38%), Positives = 330/549 (60%), Gaps = 41/549 (7%)

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           RD+ S+ +LI GYAQ   P  AL L   M     +P+ FTF ++  A        IG+Q 
Sbjct: 4   RDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 63

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA+  K       ++ + +A+++MYA+CG                               
Sbjct: 64  HALTVKY--DWHDDVYVGSALLDMYARCG------------------------------- 90

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
            +++ A  +FDQ++ ++ VSW A+I+G+++ G     L +F +M+  G      T  +V 
Sbjct: 91  -RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 149

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
            A  G+GAL+ GK +H   I++   G  +  F+   ++DMYAK GS+  A  VF  + K 
Sbjct: 150 SAIAGIGALEQGKWVHAHMIKS---GERLSAFVGNTILDMYAKSGSMIDARKVFDHVDK- 205

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K +  +NS+++  AQ+GLG  ++  F EM   G+  + +TF+++L ACSHGGLV+EGKQ
Sbjct: 206 -KDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQ 264

Query: 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           +F+ M  + ++P+++HY  +VDLL R G L++A   I  MP    + +W ALL +CR+H+
Sbjct: 265 YFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHK 324

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
           NAKIG+ A   + +L+PD     VLL N+ A T +W+ A +VRK+M  +G++K P  S++
Sbjct: 325 NAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWV 384

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E   ++H F+A+  +HP+++EI    ++++++++ AGYVPNT  V+  VDE+E++  + Y
Sbjct: 385 EIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQY 444

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSEK+ALAF LIN     TIRI KN+RICGDCH AF+ +S+++ REI+VRD  RFH F  
Sbjct: 445 HSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSS 504

Query: 711 GNCSCMDFW 719
           G+CSC D+W
Sbjct: 505 GSCSCGDYW 513



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 179/373 (47%), Gaps = 39/373 (10%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W +L+ GY+++D P EAL L   ML      PN FTF  +L +    +S   G QIH   
Sbjct: 9   WTSLIAGYAQNDMPDEALGLLLGMLRGRF-KPNGFTFASLLKAAGASASSGIGEQIHALT 67

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
           +K+    D+++ +AL+  Y+  G ++ A  VF+   +++ VS+N LI G+A+  +    L
Sbjct: 68  VKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTL 127

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
            +F +MQ +  +   FT+ ++FSA   +     GK  HA + K+   + +   +   +++
Sbjct: 128 LMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA--FVGNTILD 185

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
           MYAK G M  A +VF                                D +D++DLV+W +
Sbjct: 186 MYAKSGSMIDARKVF--------------------------------DHVDKKDLVTWNS 213

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           M++ ++Q G   +A+  F +M   G+H +++T +++L AC   G +  GK+      E+ 
Sbjct: 214 MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHN 273

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
           +    I     V+D+  + G ++ AL   +K+P    T +++ +++     H      I 
Sbjct: 274 L-EPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMK-PTAAVWGALLGSCRMH--KNAKIG 329

Query: 436 VFREMELMGLKPD 448
            F    +  L PD
Sbjct: 330 QFAADHVFELDPD 342



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 159/338 (47%), Gaps = 12/338 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SLL    +  S     QIH   V    +  +   S L+  +A  G  +    +  +F Q
Sbjct: 45  ASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMD---MAIAVFDQ 101

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +++ N   WN L+ G++R    +  L+++  M   G     +FT+  V ++ A + + + 
Sbjct: 102 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGF-EATHFTYSSVFSAIAGIGALEQ 160

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  +H H+IK G     F+ N ++  Y+  G + +A KVF+    +DLV++N+++  +AQ
Sbjct: 161 GKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQ 220

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+  F +M+   +  +  TF+++ +AC+     + GKQ+  ++ ++   +   +
Sbjct: 221 YGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEH--NLEPEI 278

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG--YTREGKIER--ARQLFD 303
                V+++  + GL+N A      M M  + A W +++      +  KI +  A  +F 
Sbjct: 279 DHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVF- 337

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
           ++D  D      + + Y+  G +  A  +   M++ G+
Sbjct: 338 ELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGV 375



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           M  RD+ SWT++I+GY+Q     +AL L   M      P+  T  ++L+A     +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           +++H   ++   +  ++++ +A++DMYA+CG +D A++VF ++    K    +N++I+G 
Sbjct: 61  EQIHALTVK-YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLES--KNGVSWNALIAGF 117

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484
           A+ G GET++ +F EM+  G +    T+ +V  A +  G +E+GK     M+  G +   
Sbjct: 118 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 177

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
                ++D+ A+ G + +A  +   +    + V W ++L A
Sbjct: 178 FVGNTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSMLTA 217


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/771 (31%), Positives = 405/771 (52%), Gaps = 100/771 (12%)

Query: 7   EHSSLLALLESCKSLKQALQ----IHGQIVHSGLNHH-ISSSQLISFFALSGCKNG-LFR 60
           + S+  ++L +C   K   Q    IH +I+H G     +  + LI  ++    KNG +  
Sbjct: 110 DESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYS----KNGHVDL 165

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           ++++F ++   +   W  ++ G S++    EA++L+  M  K  V P  + F  VL++C 
Sbjct: 166 AKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM-HKSAVIPTPYVFSSVLSACT 224

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           ++  FK G Q+H  I+K+GL  + F+ NAL+  YS +G +  A ++F     RD +SYN+
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI+G AQ      AL LF KMQ  C++PD  T  ++ SAC  +     GKQ H+ V K +
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK-M 343

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G + S+++++ +++++Y KC                                  IE A +
Sbjct: 344 G-MSSDLIIEGSLLDLYVKC--------------------------------FDIETAHE 370

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
            F   +  ++V W  M+  Y Q+G  S++  +F +M+  G+ P++ T  ++LR C  LGA
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGA 430

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           LD G+++H Q I++  F  N+++ + +IDMYAK G +DTA  +  ++ +  + V  + ++
Sbjct: 431 LDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRLRE--EDVVSWTAM 487

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC--------------------- 459
           I+G  QH L   ++ +F+EME  G++ D + F + + AC                     
Sbjct: 488 IAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGY 547

Query: 460 -------------------SHGGLVEEGKQFFESM-------LNYGIKPQMEH-YG---- 488
                              S  G +E+ K+ F  M        N  I    +H YG    
Sbjct: 548 SEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAV 607

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
            + + + + G +      +  MP + +++IWR LL+AC +H+N +IGE A + LL+LEP+
Sbjct: 608 SLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPE 667

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
             A YVLLSNM A + +W+   + R++M D G++K PG S+IE   ++H F    + HP 
Sbjct: 668 DSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPL 727

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
            ++I   + D+  +    GYV +   ++ DV++E+K+     HSEKLA+AFGL++  +  
Sbjct: 728 AEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTM 787

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IR+ KNLR+C DCH   K +S+I  R I+VRDA RFH F+ G CSC D+W
Sbjct: 788 PIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 226/502 (45%), Gaps = 79/502 (15%)

Query: 99  MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158
           M  +GI   N  T+ ++   C    S     ++H  I K G + +  + + LI  Y   G
Sbjct: 1   MEERGI-RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHG 59

Query: 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS 218
            ++NA K+F+   + ++  +N +I+G    K     L LF  M    + PD  TF ++  
Sbjct: 60  EVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 219 ACTELNDP-RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSK 277
           AC+    P ++ +Q HA +  +    GS+ L+   +I++Y+K G +++A+ VF  + + K
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHH--GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFL-K 176

Query: 278 STAAWSSMISGYTREGKIERARQLFDQMDQRD---------------------------- 309
            + +W +MISG ++ G+ + A  LF QM +                              
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236

Query: 310 --LVSW---------TAMISGYSQVGGFSQALELFGKMESLG------------------ 340
             +V W          A+++ YS+ G    A ++F KM                      
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSD 296

Query: 341 -------------IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
                        + PD VT+ ++L AC  +GA   GK+LH  Y+  +    ++ +  ++
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLH-SYVIKMGMSSDLIIEGSL 355

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           +D+Y KC  I+TA   F  +    + V L+N ++    Q G    S  +F +M++ GL P
Sbjct: 356 LDLYVKCFDIETAHEYF--LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMP 413

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           +  T+ ++L  C+  G ++ G+Q    ++  G +  +     ++D+ A+ G LD A G++
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473

Query: 508 QSMPYDANSVIWRALLAACRLH 529
           Q +  + + V W A++A    H
Sbjct: 474 QRLR-EEDVVSWTAMIAGYTQH 494



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 19/214 (8%)

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           ME  GI  +  T + +   C   G+L   K+LH +  ++   G ++ L + +ID+Y   G
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHG 59

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            +D A+ +F  IP +   VS +N +ISGL    L    + +F  M    + PD  TF +V
Sbjct: 60  EVDNAIKLFDDIPSS--NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASV 117

Query: 456 LCACSHG-GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACS G    +  +Q    ++++G          ++DL +++G +D A  + + + +  
Sbjct: 118 LRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL-FLK 176

Query: 515 NSVIWRALLAA--------------CRLHRNAKI 534
           +SV W A+++               C++H++A I
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI 210


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/549 (39%), Positives = 322/549 (58%), Gaps = 42/549 (7%)

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           D  S NT++   A    P  AL L R+       PD  T+  +  ACT L   R G+  H
Sbjct: 87  DPFSLNTVLRIAASSAHPRIALALHRR---RLAPPDTHTYPPLLQACTRLLALREGESLH 143

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           A   KN G V + + +K ++++ Y  CGL   A RV                        
Sbjct: 144 AEAAKN-GLV-ALVFVKNSLVHHYGACGLFESAHRV------------------------ 177

Query: 294 KIERARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
                   FD++   +R+LVSW ++++G++  G  ++ L +F +     + PD  T+V+V
Sbjct: 178 --------FDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSV 229

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC  +GAL  G+R+H  +   V    N  +  A+ID+YAKCG ++ A  VF ++    
Sbjct: 230 LTACAEIGALTLGRRVHV-FASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEM-GVA 287

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
           +TV  + S+I GLA +G G+ ++ +F  ME   L P  +T V VL ACSH GLV++G ++
Sbjct: 288 RTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRY 347

Query: 472 FESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F  M + YGI P +EH GCMVDLL R GR++EA+  I +MP + N+V+WR LL AC +H+
Sbjct: 348 FNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHK 407

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
             ++GE A  +L++L+P H   YVLLSN+ A   RW +A  +RK M   G++K PG S +
Sbjct: 408 KLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLV 467

Query: 591 EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
           E   +++ F+   +SHP++ +I   L ++  +L+  GYVP T  V+ D++EEEKET ++Y
Sbjct: 468 ELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNY 527

Query: 651 HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
           HSE+LA+AF L+ S     IRI KNLR+CGDCHL  KL+S++Y REI+VRD  RFH FK 
Sbjct: 528 HSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKG 587

Query: 711 GNCSCMDFW 719
           G CSC D+W
Sbjct: 588 GECSCKDYW 596



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 220/444 (49%), Gaps = 52/444 (11%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSG---LNHHISSSQLISFFALSGCKNG----LFRSR 62
           +LL L     S+  A QIH + + +    L+H + +  L+  F L+  + G    L+   
Sbjct: 20  ALLRLHLPSPSVAAAKQIHARALRAAGVPLSHPLLAKHLL--FHLASLRAGPPPLLYAVT 77

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           +L   + +P+ F  NT++R  + S  P+ AL L+   L+     P+  T+P +L +C RL
Sbjct: 78  VLSCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAP----PDTHTYPPLLQACTRL 133

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSYNT 180
            + + G  +H    K GL   +F++N+L+H Y   G   +AH+VF+    L R+LVS+N+
Sbjct: 134 LALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNS 193

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           ++NG+A    P   L +FR+  ++ + PD FT V++ +AC E+    +G++ H    K +
Sbjct: 194 VMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASK-V 252

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G VG N  +  A+I++YAKCG +  A +VF  MG++++  +W+S+I G    G       
Sbjct: 253 GLVG-NSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNG------- 304

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
            F +                        ALELFG ME   + P ++TMV VL AC   G 
Sbjct: 305 -FGK-----------------------DALELFGLMERERLIPTDITMVGVLYACSHCGL 340

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +D G R   +  +       I     ++D+  + G ++ A +    +P     V ++ ++
Sbjct: 341 VDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAV-VWRTL 399

Query: 421 ISGLAQHG---LGETSIAVFREME 441
           +   A H    LGE + A   E++
Sbjct: 400 LGACAMHKKLELGEAAWARLVELD 423



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 180/415 (43%), Gaps = 27/415 (6%)

Query: 14  LLESCK---SLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS-RILFSQI 68
           LL++C    +L++   +H +   +GL   +   + L+  +    C  GLF S   +F +I
Sbjct: 126 LLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYG--AC--GLFESAHRVFDEI 181

Query: 69  D--NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
                N+  WN++M G++ +  P E L ++   L   ++ P+ FT   VL +CA + +  
Sbjct: 182 PVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLM-PDGFTIVSVLTACAEIGALT 240

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLINGY 185
            G ++H    K GL  +  + NALI  Y+  G + +A KVFE   +AR +VS+ +LI G 
Sbjct: 241 LGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGL 300

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A       AL LF  M+   + P   T V +  AC+       G ++   +    G +  
Sbjct: 301 AGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYG-IAP 359

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            +     ++++  + G +  A    +TM +  +   W +++       K+E     + ++
Sbjct: 360 GIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARL 419

Query: 306 DQRDL---VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD 362
            + D      +  + + Y+ VG ++ A  L   M + G+  +    +  LR  V      
Sbjct: 420 VELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSV--YEFV 477

Query: 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-GSIDTALSVFYKIPKNLKTVSL 416
            G R H +          I+ T A I    +C G +    +V   I +  K  +L
Sbjct: 478 MGDRSHPE-------SDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETAL 525


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/731 (33%), Positives = 382/731 (52%), Gaps = 52/731 (7%)

Query: 1   MKRLVLEHSSLLALLESC---KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKN 56
           ++ L+   +S +A+L SC    SL  A  IH ++   G L   + ++ L++ +   G  +
Sbjct: 226 LEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVD 285

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
               S  +F  +   N   WN ++  +++      A  +Y  M  +G   PN  TF   L
Sbjct: 286 ---ESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGF-RPNKITFVTAL 341

Query: 117 NSCARLSSFKSG--CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            +    SS   G    +H  I   GLE D+ +  AL+  Y   G I+ A   F+   A++
Sbjct: 342 KAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKN 401

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+N ++  Y        A+ LF  M+   + P+  +++A+   C ++++ R     HA
Sbjct: 402 IVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEAR---SIHA 458

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            V  N G       +   V+ M+A                                R G 
Sbjct: 459 EVVGN-GLFAQESSIANGVVRMFA--------------------------------RSGS 485

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +E A   FD    +D VSW   ++  S       A+  F  M+  G  PD+ T+V+V+  
Sbjct: 486 LEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDV 545

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS-IDTALSVFYKIPKNLKT 413
           C  LG L+ G+ + QQ    +   R++ + +AV++M AKCGS +D    +F ++P + K 
Sbjct: 546 CADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKD 605

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQ-F 471
           +  +N++I+  AQHG G  ++ +FR M+    ++PD  TFV+VL  CSH GLVE+G   F
Sbjct: 606 LVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCF 665

Query: 472 FESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F +    GI+ Q +EHY C+VD+L R G L EA   I+ MP  A+SV+W +LL AC  + 
Sbjct: 666 FLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYG 725

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK-PPGWSY 589
           + + GE A +  ++L       YV+LSN+ A   RWE++ +VR+ M +  ++K  PG S 
Sbjct: 726 DLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRAPGKSS 785

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           I     +H F A  +SHPQ+ EI   L+ +   ++ AGYVP+T  V+ DV+EE+KE ++ 
Sbjct: 786 IVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLW 845

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF- 708
           YHSEKLA+AFGLI+   + +IR+ KNLR+C DCH A K ++ + +REI VRD  RFH F 
Sbjct: 846 YHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFG 905

Query: 709 KKGNCSCMDFW 719
           K G CSC D+W
Sbjct: 906 KDGECSCGDYW 916



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 148/532 (27%), Positives = 243/532 (45%), Gaps = 63/532 (11%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILF 65
           +L  LL  C     L Q  Q+H QIV  GL  + +  + L+  +  S C++ L  +   F
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMY--SKCRS-LDDANAAF 82

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML--SKGIVSPNNFTFPFVLNSCAR-- 121
           S + +  I  WNTL+   S   SP     LYT M    +    PN  T   VL + A   
Sbjct: 83  SALRSRGIATWNTLIAAQS---SPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGD 139

Query: 122 ---LSSFKSGCQI-HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
               SS ++  +I H  I    LE DLF+  AL+  Y   G + +A +VF      DL+ 
Sbjct: 140 PSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLIC 199

Query: 178 YNTLINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           +N  I   A   E P  AL L R+M    + P+  +FVA+ S+C + +   + +  HA V
Sbjct: 200 WNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARV 259

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            + LG +G ++++ TA++ MY +CG ++ +  VF  M +                     
Sbjct: 260 -EELGFLG-DVVVATALVTMYGRCGSVDESIAVFEAMAV--------------------- 296

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                      R+ VSW AMI+ ++Q G  S A  ++ +M+  G  P+++T V  L+A  
Sbjct: 297 -----------RNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAAC 345

Query: 357 GLGALDFGKR--LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
              + D G+   LH  +I       ++ + TA++ MY   G+ID A + F  IP   K +
Sbjct: 346 SSSSQDLGESAALH-GWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPA--KNI 402

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +N++++    +G    ++ +F  M+   L P+ V+++ VL  C     V E +     
Sbjct: 403 VSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARSIHAE 459

Query: 475 MLNYGIKPQMEHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           ++  G+  Q       +V + AR G L+EA     +     +SV W   +AA
Sbjct: 460 VVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVK-DSVSWNTKVAA 510


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/647 (36%), Positives = 367/647 (56%), Gaps = 43/647 (6%)

Query: 80  MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS--FKSGCQIHCHIIK 137
           M  +S +    EALV +  M   G   P+  TF  +L + A++ +     G +IH +   
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSG-ERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARI 59

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
            GL  ++ +  A+I  Y   G +++A   FE    ++ V++N ++  Y        AL L
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 198 FRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
           FR+M  +    +PD F+F     AC+ L D   G++ H ++ +    +  ++++ TA++N
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLN 179

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR-DLVSWT 314
           MY+KCG                                 +E AR++FD +    D V W 
Sbjct: 180 MYSKCG--------------------------------DLEEARKVFDSIRHDADSVCWN 207

Query: 315 AMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
           AMI+ Y+Q G   QAL+L+  M ++  + P + T V V+  C  L AL  G+ +H + + 
Sbjct: 208 AMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHAR-VR 266

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETS 433
              F  N+ ++ A++ MY KCG +D AL VF+ +   LK    +N+IIS  A HG  + +
Sbjct: 267 ATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM--KLKDEISWNTIISSYAYHGHSDQA 324

Query: 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVD 492
           + +++EM+L G+KP  VTFV +L ACSHGGLV +G  +F  M + + IKP + H+GC++D
Sbjct: 325 LLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIID 384

Query: 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552
           LL R GRL EA  +++SMP  AN+V W +LL AC+ H + K G  A  +++D  P     
Sbjct: 385 LLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGG 444

Query: 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEI 612
           YVLLSN+ A   RW++  ++RK+M   G++K PG S+IE    +H F++  +SHPQ +EI
Sbjct: 445 YVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEI 504

Query: 613 ELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRI 672
            + L  M  ++K  GYVP+T  V  D++EEEKE ++  HSEKLA+ +G +    K  +RI
Sbjct: 505 YVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRI 564

Query: 673 TKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KNLR+C DCH A K +S I  R+I+VRDA RFHLF+ G+CSC D+W
Sbjct: 565 VKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 208/483 (43%), Gaps = 61/483 (12%)

Query: 21  LKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           + Q  +IH     SGL  + +  + +IS +   G    L  +R  F ++   N   WN +
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCG---RLDDARAAFEELQWKNSVTWNAM 103

Query: 80  MRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           M  Y      +EAL L+  M  +     P+ F+F   + +C+ L   + G +IH  + + 
Sbjct: 104 MTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRRE 163

Query: 139 GLEF--DLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLINGYAQVKEPCPAL 195
           G E   D+ +  AL++ YS  G +  A KVF+      D V +N +I  YAQ      AL
Sbjct: 164 GKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQAL 223

Query: 196 WLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
            L+R M D+  + P   TFV +   C EL+  + G+  HA V        +N+L+  A++
Sbjct: 224 DLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT--NFDANLLVSNALV 281

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL---- 310
           +MY KCG ++ A  VF +M + K   +W+++IS Y   G  ++A  L+ +MD + +    
Sbjct: 282 HMYGKCGCLDEALDVFHSMKL-KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTE 340

Query: 311 VSWTAMISGYSQVGGFSQALELFGKME--------------------------------- 337
           V++  ++S  S  G  +  L+ F +M+                                 
Sbjct: 341 VTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLK 400

Query: 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV-------VFGRNIFLTTAVIDM 390
           S+ I  + V  +++L AC   G L  G R   Q ++ V       V   NI+        
Sbjct: 401 SMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKD 460

Query: 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIA----VFREMELMGL 445
             K   I  A  V     K+ ++   + +  +SG   H  GE        +  EM+ +G 
Sbjct: 461 VEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGY 520

Query: 446 KPD 448
            PD
Sbjct: 521 VPD 523



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 150/327 (45%), Gaps = 38/327 (11%)

Query: 4   LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           + +E  S L  LE  + + + L+  G+ +H  +   +  + L++ ++  G    L  +R 
Sbjct: 139 IAIEACSNLEDLEQGREIHEMLRREGKELHKDV---VVGTALLNMYSKCG---DLEEARK 192

Query: 64  LFSQI-DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           +F  I  + +   WN ++  Y++    ++AL LY SM     ++P   TF  V++ CA L
Sbjct: 193 VFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 252

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           S+ K G  IH  +     + +L + NAL+H Y   G ++ A  VF     +D +S+NT+I
Sbjct: 253 SALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTII 312

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--------------LNDPRI 228
           + YA       AL L+++M    ++P   TFV + SAC+                +D RI
Sbjct: 313 SSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRI 372

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
                     + GC          +I++  + G +  AE V  +M +  +   W S++  
Sbjct: 373 KPSV-----PHFGC----------IIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGA 417

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTA 315
               G ++R  +  DQ+  R  V WT+
Sbjct: 418 CKTHGDLKRGVRAADQVVDR--VPWTS 442


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/641 (35%), Positives = 356/641 (55%), Gaps = 48/641 (7%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPF-----------VLNSCARLSSFKSGCQIHCHIIKF 138
           Q  ++   S+  +G ++P N    F           +L S  R  S   G QIH HIIK 
Sbjct: 24  QNPIIKTQSLSQEGTITPQNSPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKS 83

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL+    + + LI+FYS       + +VFE S  +   +++++I+ +AQ +EP  A+  F
Sbjct: 84  GLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYF 143

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M    + PD   F +   AC  L    +GK  H +V K    V  ++ + +++++MYA
Sbjct: 144 CRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDV--DVFVGSSLVDMYA 201

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG                                 I+ AR +FD+M  R++VSW+ MI 
Sbjct: 202 KCG--------------------------------DIKEARNVFDEMPHRNVVSWSGMIY 229

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378
           GY+Q+G   +A+ LF +    G+  ++ T+ +V+R C     L+ GK++H    +   + 
Sbjct: 230 GYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFK-TSYD 288

Query: 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438
            + F+ +++I +Y+KCG I+ A  VF ++P  +K + ++N+++   AQH   + +  +F 
Sbjct: 289 LSGFVGSSLISLYSKCGLIEGAYRVFDEVP--IKNLGMWNAMLIACAQHAHTKEAFDLFT 346

Query: 439 EMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498
           +ME  G++P+ +TF+ VL ACSH GLVEEGK++F  M  Y I+P  +HY  MVDLL R G
Sbjct: 347 KMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAG 406

Query: 499 RLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558
           +L EA  +I+ MP +    +W A +  CR+H N  +   A  K+ +L       +V+LSN
Sbjct: 407 KLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSN 466

Query: 559 MLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKD 618
             A   R+E+A + RK++ D G++K  G S+IE    +H+F A  + H + KEI   L+D
Sbjct: 467 AYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLED 526

Query: 619 MTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRI 678
           +  +++ AGYV +T  V+ +V  EEK   + YHSE+LA+AFGLI+      IRI KNLR+
Sbjct: 527 LGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRV 586

Query: 679 CGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CGDCH A K +S++  R I+VRD  RFH F+ G CSC D+W
Sbjct: 587 CGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 208/427 (48%), Gaps = 57/427 (13%)

Query: 19  KSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           +SL +  QIH  I+ SGL    +    LI+F+  S  +  L  S++ F + +  +   W+
Sbjct: 68  RSLLKGQQIHAHIIKSGLQVIPLVCHYLINFY--SKTQLPLLSSQV-FEESERKSSTTWS 124

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
           +++  +++++ P  A+  +  M+ + +  P++  FP    +CA L     G  +HC +IK
Sbjct: 125 SVISSFAQNEEPVLAIQYFCRMIGENLC-PDDHIFPSATKACAILGRCDVGKSVHCLVIK 183

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
            G + D+F+ ++L+  Y+  G I  A  VF+    R++VS++ +I GY Q+ E   A+ L
Sbjct: 184 TGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRL 243

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN----LGCVGSNMLLKTAV 253
           F++     +  + FT  ++   C       +GKQ H + +K      G VGS++      
Sbjct: 244 FKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSL------ 297

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I++Y+KCGL+  A RV                                FD++  ++L  W
Sbjct: 298 ISLYSKCGLIEGAYRV--------------------------------FDEVPIKNLGMW 325

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR---LHQQ 370
            AM+   +Q     +A +LF KME+ G+ P+ +T + VL AC   G ++ GK+   L ++
Sbjct: 326 NAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKK 385

Query: 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLG 430
           Y   +  G   +   +++D+  + G +  ALSV   +P    T S++ + I+G   H  G
Sbjct: 386 Y--EIEPGTQHY--ASMVDLLGRAGKLQEALSVIKGMPTE-PTESVWGAFITGCRIH--G 438

Query: 431 ETSIAVF 437
            T +A F
Sbjct: 439 NTDLAAF 445


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 345/588 (58%), Gaps = 33/588 (5%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMF 217
           G +N+A +VFE    +  V++N+++ GY+  +     + + R++ D   +PD F++  M 
Sbjct: 19  GDLNSALRVFESMTVKTTVTWNSMLAGYSNRRG---KIKVARQLFDRIPEPDIFSYNIML 75

Query: 218 SACTELNDPRIGKQF-HAVVYKNLGCVGS------------------------NMLLKTA 252
           +      D    + F   +  K+     +                        N +   A
Sbjct: 76  ACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNA 135

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +I+ Y + G +++A+++F    + +S  AW++MI+G+ + GKIE A + F++M  ++LV+
Sbjct: 136 MISGYVESGDLDLAKQLFEVAPV-RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVT 194

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
           W AMI+GY +       L+LF +M   G  P+  ++ +VL  C  L AL  GK++HQ   
Sbjct: 195 WNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLIC 254

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
           ++ V   NI   T+++ MY KCG ++ A  +F  +P+  K V  +N++ISG AQHG GE 
Sbjct: 255 KSPV-SWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQ--KDVVTWNAMISGYAQHGAGEK 311

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMV 491
           ++ +F +M   G+KPD +TFV VL AC+H G V+ G ++F SM+ +YG++ + +HY C+V
Sbjct: 312 ALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVV 371

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551
           DLL R G+L EA  LI+ MP+  +S I+  LL ACR+H+N ++ E A + LL+L+P+  A
Sbjct: 372 DLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAA 431

Query: 552 HYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKE 611
            YV L+N+ A   RW+    VR+ M D+ + K PG+S+IE    +H F +  + HP+   
Sbjct: 432 GYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAF 491

Query: 612 IELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIR 671
           I   L ++  K++ AGYVP+    + DV EE+K+ ++  HSEKLA+A+GLI       IR
Sbjct: 492 IHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIR 551

Query: 672 ITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           + KNLR+CGDCH A K +S I  R I+VRD  RFH F++G CSC D+W
Sbjct: 552 VFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 46/388 (11%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R+ F Q+   +   WNT++ G+S++    +A  L+  M  +  VS N     +V +   
Sbjct: 87  ARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDL 146

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            L+           + +      +    A+I  +  FG I  A K FE    ++LV++N 
Sbjct: 147 DLAK---------QLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNA 197

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I GY +  +    L LF++M +S  +P+  +  ++   C+ L+  ++GKQ H ++ K+ 
Sbjct: 198 MIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKS- 256

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             V  N+   T++++MY KCG +  A ++F  M   K    W++MISGY + G  E+A  
Sbjct: 257 -PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVTWNAMISGYAQHGAGEKALY 314

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LFD                               KM   G+ PD +T VAVL AC   G 
Sbjct: 315 LFD-------------------------------KMRDEGMKPDWITFVAVLSACNHAGF 343

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           +D G       + +          T V+D+  + G +  A+ +  K+P    + ++F ++
Sbjct: 344 VDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHS-AIFGTL 402

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPD 448
           +     H      +A F    L+ L P+
Sbjct: 403 LGACRIH--KNLELAEFAAKNLLNLDPE 428



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 47/347 (13%)

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT-REGKIERARQL-- 301
           SN++    VI  + + G +N A RVF +M + K+T  W+SM++GY+ R GKI+ ARQL  
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTV-KTTVTWNSMLAGYSNRRGKIKVARQLFD 61

Query: 302 -----------------------------FDQMDQRDLVSWTAMISGYSQVGGFSQALEL 332
                                        FDQM  +D  SW  MISG+SQ G   QA EL
Sbjct: 62  RIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQAREL 121

Query: 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392
           F  M       + V+  A++   V  G LD  K+L +     V   R++   TA+I  + 
Sbjct: 122 FLVMPVR----NSVSWNAMISGYVESGDLDLAKQLFE-----VAPVRSVVAWTAMITGFM 172

Query: 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452
           K G I+ A   F ++P  +K +  +N++I+G  ++   E  + +F+ M   G +P+  + 
Sbjct: 173 KFGKIELAEKYFEEMP--MKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSL 230

Query: 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512
            +VL  CS+   ++ GKQ  + +    +   +     ++ +  + G L++A+ L   MP 
Sbjct: 231 SSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP- 289

Query: 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAHYVLLS 557
             + V W A+++    H   +       K+ D  ++PD      +LS
Sbjct: 290 QKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLS 336


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/616 (34%), Positives = 351/616 (56%), Gaps = 42/616 (6%)

Query: 105 VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164
           +S +  T+  ++  C    + +    +H H+   G E   F+ N LI+ Y  FG ++ A 
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71

Query: 165 KVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224
            +F+    R++VS+ T+I+ Y+       AL     M    ++P+ +T+ ++  AC  L 
Sbjct: 72  NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLL 131

Query: 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSS 284
           + R   Q H  + K                                  +G+       S+
Sbjct: 132 NLR---QLHGSILK----------------------------------VGLESDVFVRSA 154

Query: 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +I  Y++ G+   A  +F++M   DLV W ++I G++Q     + L L+ +M+      D
Sbjct: 155 LIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVAD 214

Query: 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404
           + T+ +VLRAC GL  L+ G+++H   ++   + +++ L  A++DMY KCGS++ A  +F
Sbjct: 215 QSTLTSVLRACTGLALLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLEDANLLF 271

Query: 405 YKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
            ++      +S ++++I+GLAQ+G    ++ +F  M+  G KP+ +T + VL ACSH GL
Sbjct: 272 TRMMTEKDVIS-WSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGL 330

Query: 465 VEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V +G  +F+SM  ++GI P  EHYGC++DLL R G+LDEA  LI  M ++ ++V WR LL
Sbjct: 331 VNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILL 390

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            ACR+H+N  +   A +++L L+P     Y+LLSN+ A + +WE+  +VR+ M   G++K
Sbjct: 391 GACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKK 450

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
            PG S+IE +  +H F+    SHP+ +EI+  L  +  +L   GYVP+T  V+ D++ E+
Sbjct: 451 DPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQ 510

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
            E  + YHSEKLA+ FGL++  +++TI I KNLRICGDCH+  KL+S++  R I++RD I
Sbjct: 511 MEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPI 570

Query: 704 RFHLFKKGNCSCMDFW 719
           R+H F+ G CSC D+W
Sbjct: 571 RYHHFRGGVCSCGDYW 586



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 222/466 (47%), Gaps = 51/466 (10%)

Query: 20  SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLF-RSRILFSQIDNPNIFIWNT 78
           +++QA  +H  +  +G       + LI+       K GL   +R LF ++ + N+  W T
Sbjct: 31  AVQQARLVHEHVFSNGYE---PKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTT 87

Query: 79  LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           ++  YS S+   +AL     ML +G V PN +T+  VL +C  L + +   Q+H  I+K 
Sbjct: 88  MISAYSNSNLNHKALDFLILMLREG-VRPNMYTYSSVLRACDGLLNLR---QLHGSILKV 143

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GLE D+F+R+ALI  YS  G  ++A  VF   +  DLV +N++I G+AQ  +    L L+
Sbjct: 144 GLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLY 203

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
           ++M+ +    D  T  ++  ACT L    +G+Q H  V K       +++L  A+++MY 
Sbjct: 204 KRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK----YDQDLILNNALLDMYC 259

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318
           KCG +  A  +F+ M   K   +WS+MI+G                              
Sbjct: 260 KCGSLEDANLLFTRMMTEKDVISWSTMIAG------------------------------ 289

Query: 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN--VV 376
             +Q G  + AL+LF  M+S G  P+ +T++ VL AC   G ++ G    Q   E+  + 
Sbjct: 290 -LAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGID 348

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
            GR  +    +ID+  + G +D A+ + +++      V+ +  ++     H      +A+
Sbjct: 349 PGREHY--GCIIDLLGRAGKLDEAVKLIHEMNHEPDAVT-WRILLGACRVH--KNVDLAI 403

Query: 437 FREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           +   E++ L P D  T++ +    ++    E+  +    M   G+K
Sbjct: 404 YAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVK 449


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/444 (46%), Positives = 293/444 (65%), Gaps = 4/444 (0%)

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336
           KS  + ++MI+ Y + G I+ AR LFD +++RD + W  MI GY+Q G  ++ L LF +M
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
            +  + P+EVT++AVL AC   GAL+ G+ +H  YIEN   G N+ + T++IDMY+KCGS
Sbjct: 64  LNAKVRPNEVTVLAVLSACGQTGALETGRWVHS-YIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           ++ A  VF +I    K V  +NS++ G A HG  + ++ +F+EM ++G +P  +TF+ VL
Sbjct: 123 LEDARLVFERISN--KDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 457 CACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSH GLV EG +FF SM + YGI+P++EHYGCMV+LL R G L+EAY L+++M  D +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
            V+W  LL ACRLH N  +GE   + L+     +   YVLLSN+ A    WE   +VR L
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           M +SG +K PG S IE N  +H FLA    HP+++EI  ML+++   LK+ GY P T  V
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
           + D+++ +KE  +  HSEKLALAFGLI ++   TI+I KNLR+C DCH   KL+S+I  R
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           ++++RD  RFH F  G CSC D+W
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 40  ISSSQLISFFALSGC--KNGLF-RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           +    L+S  A+  C  K G+   +R+LF  ++  +   WN ++ GY++   P E L+L+
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             ML+   V PN  T   VL++C +  + ++G  +H +I   G+  ++ +  +LI  YS 
Sbjct: 61  RQMLNAK-VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSK 119

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G + +A  VFE    +D+V++N+++ GYA       AL LF++M     QP   TF+ +
Sbjct: 120 CGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGV 179

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276
            +AC+       G +F   +    G +   +     ++N+  + G +  A  +   M + 
Sbjct: 180 LNACSHAGLVSEGWKFFYSMKDEYG-IEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEID 238

Query: 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +    W +++      G I    Q+ + +  ++L +
Sbjct: 239 QDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLAN 274


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/516 (42%), Positives = 324/516 (62%), Gaps = 10/516 (1%)

Query: 206 IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           I PD   F  +  AC    D R   + H  + +  G  G+N  +  ++I+ Y  C  +N+
Sbjct: 7   ILPDHQLFCDLLEACKLSQDIRTATETHTRIIR-FG-YGTNSSIAASLISTYVNCNQLNL 64

Query: 266 AERVF-STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVG 324
           A +V       + S A  + +I  + R G+ E A+++F +M  RD+V+W +MI GY + G
Sbjct: 65  AYQVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNG 124

Query: 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLT 384
            F +AL  F  M S  + PD+ T  +V+ AC  LGAL+  + LH   ++  +   N  L+
Sbjct: 125 KFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRI-EVNFILS 183

Query: 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444
           +A+IDMY+KCG I+TA  VF  + +N   VS++NS+I+GLA HGL   ++ VF +ME   
Sbjct: 184 SALIDMYSKCGRIETAKEVFESVERN--DVSVWNSLINGLAVHGLALDAMMVFSKMEAEN 241

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEA 503
           + PD +TF+ +L ACSH GLV+EG+++F+ M NY  IKPQ+EHYG MVDLL R G LDEA
Sbjct: 242 VLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEA 301

Query: 504 YGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563
           Y +I +MP + + ++WR LL+ACR HRN ++GE+A   + ++       YVLLSN+    
Sbjct: 302 YAMITAMPMEPDVIVWRILLSACRTHRNTELGEVA---VANISGPKSGDYVLLSNIYCSQ 358

Query: 564 YRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKL 623
            RW+ A++VR++M + G++K  G S+ E    +HRF A  KSHP+T+ +  +L+ +  + 
Sbjct: 359 NRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRT 418

Query: 624 KSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCH 683
           K  G+VP+T  V+ DV EEEKE  + +HSEKLALA+G++ +     IRI KNLRIC DCH
Sbjct: 419 KLEGFVPSTELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYDCH 478

Query: 684 LAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              K++S +  R I++RD IRFH F+ G+CSC D+W
Sbjct: 479 NWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 143/285 (50%), Gaps = 16/285 (5%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVH-----SGLNHHISSSQLISFFALSGCKNGLFRSRI 63
           +SL++   +C  L  A Q+  Q+       +GLN  I S   I  + ++         + 
Sbjct: 50  ASLISTYVNCNQLNLAYQVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIA---------KK 100

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++ + ++  WN+++ GY R+   +EAL  + +MLS   V P+ FTF  V+ +CARL 
Sbjct: 101 VFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSN-VEPDKFTFASVITACARLG 159

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           +      +H  +++  +E +  + +ALI  YS  G I  A +VFE     D+  +N+LIN
Sbjct: 160 ALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLIN 219

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           G A       A+ +F KM+   + PD+ TF+ +  AC+     + G+++  ++ +N   +
Sbjct: 220 GLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLM-ENYYSI 278

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
              +    A++++  + GL++ A  + + M M      W  ++S 
Sbjct: 279 KPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSA 323


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/614 (36%), Positives = 346/614 (56%), Gaps = 52/614 (8%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISF-----------FALSGCKNGLFR 60
           L LL SCKS+++  QIH  I+ +      ++  +IS              L+     L+ 
Sbjct: 30  LLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWY 89

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
           +  L +      ++I+N +++  S S++       LY  ML  G+ SP+ +T P++L +C
Sbjct: 90  ASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGL-SPDTYTLPYLLKAC 148

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           ++  +F    QIH H IK GL  +LF++N L+ FY++ G+I    KVF+     DL+S+ 
Sbjct: 149 SQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWT 208

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           TLI  Y+++  P  A+  F +M  +    D  T V + SAC++L D  +GK+  A +  +
Sbjct: 209 TLIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLGKKILAYMDHH 265

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
           L  V S++ L  A+++MY KCG  ++A                                R
Sbjct: 266 LFDVHSDVFLGNALLDMYLKCGQPHLA--------------------------------R 293

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           QLF  M  ++LVSW +MISG +  G F +AL +F +M+++G+ PD VT+V VL +C  LG
Sbjct: 294 QLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLG 353

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
            L+ GK +H  YI+      + ++  A++DMYAKCGSID A  VF  +    K V  + +
Sbjct: 354 DLELGKWVHS-YIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAM--KCKDVYSYTA 410

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           +I G A HG  + ++A+F EM  MG++PD VT V VL ACSH GL+EEG++ F+ M   Y
Sbjct: 411 MIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLY 470

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
            ++PQ EHYGCMVDLL R G + EA      MP   ++ +W +LL AC++H   ++GE  
Sbjct: 471 HLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETV 530

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            QKL+++EP+    Y+L+SN+ +   RW +A + RK M  + I+K PG S IE +G +H 
Sbjct: 531 IQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHE 590

Query: 599 FLASKKSHPQTKEI 612
           F   +KSHP+++E+
Sbjct: 591 FRKGEKSHPKSREM 604


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 324/557 (58%), Gaps = 44/557 (7%)

Query: 170 SLARDLVSYNTLINGYAQVKEPCP-----ALWLFRKMQDSCIQPDAFTFVAMFSACTEL- 223
           SL  D    NTLI  +  V  P P     A   F  M  + + P+ FTF  +  +C  L 
Sbjct: 92  SLPLDAFLVNTLIRTH--VTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALP 149

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
             P +G Q HA   K  G    + +  T +I+MY+  G                      
Sbjct: 150 GSPDVGLQAHAAALK-FGFAADHYVSNT-LIHMYSCFG---------------------- 185

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                    G +  AR +F++M +   V+W+AMI GY + G  S A+ LF  M+  G+ P
Sbjct: 186 --------AGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRP 237

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           DEVT++ VL A           R   +++E    G+++ L  A+ID  AKCG +D A++V
Sbjct: 238 DEVTVIGVLAA-AADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 296

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  + +  +TV  + S+I  LA  G G+ ++ VF EM+ +G+ PD V F+ VL ACSH G
Sbjct: 297 FEGMEE--RTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAG 354

Query: 464 LVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           +V+EG+ +F+SM   YGI+P++EHYGCMVD+  R G +++    +++MP   N +IWR L
Sbjct: 355 MVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTL 414

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           +AACR H   ++GE   + LL+  P H A+YV+LSN+ A T RW+E  ++R+ M   GI+
Sbjct: 415 VAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIK 474

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
           K PG S +E +G +H F+A  +SHPQ KEI  M+++M+ +L+  G++  T +V+ D+DEE
Sbjct: 475 KVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEE 534

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           +KE  + +HSEKLA+AF L+ +     +R+ KNLR+C DCH A K +S++Y REI+VRD 
Sbjct: 535 DKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDR 594

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH FK G+CSC DFW
Sbjct: 595 SRFHRFKDGSCSCKDFW 611



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 215/485 (44%), Gaps = 54/485 (11%)

Query: 72  NIFIWNTLMRGYSRSDSP---QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS-SFKS 127
           + F+ NTL+R +  S  P   + A   +  ML +  V+PN FTFPF+L SCA L  S   
Sbjct: 96  DAFLVNTLIRTHVTSPFPSARRRAAAFFPLML-RAAVAPNKFTFPFLLKSCAALPGSPDV 154

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIF--GYINNAHKVFEGSLARDLVSYNTLINGY 185
           G Q H   +KFG   D ++ N LIH YS F  G++ +A  VFE       V+++ +I GY
Sbjct: 155 GLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGY 214

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            +      A+ LFR MQ S ++PD  T + + +A  +L    + +     V +    +G 
Sbjct: 215 VRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVERE--GIGK 272

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++ L  A+I+  AKCG ++ A  VF  M   ++  +W+S+I     EG+           
Sbjct: 273 SVTLCNALIDTLAKCGDVDGAVAVFEGM-EERTVVSWTSVIDALAMEGR----------- 320

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
                        G   VG       +F +M+++G+ PD+V  + VL AC   G +D G+
Sbjct: 321 -------------GKEAVG-------VFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGR 360

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
                          I     ++DM+ + G ++  L     +P     + ++ ++++   
Sbjct: 361 GYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPI-IWRTLVAACR 419

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME 485
            HG  E   ++ R + L         +V +    +     +E  +    M   GIK   +
Sbjct: 420 AHGRLELGESITRNL-LNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIK---K 475

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAG--QKLL 543
             GC   L+  DG + E     +S P      I+R +    R  R  +IG IA   + LL
Sbjct: 476 VPGC--SLVELDGEVHEFIAGDESHPQYKE--IYRMVEEMSRELR--RIGHIAATSEVLL 529

Query: 544 DLEPD 548
           DL+ +
Sbjct: 530 DLDEE 534



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 14  LLESCKSLKQA----LQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           LL+SC +L  +    LQ H   +  G   +H++S++ LI  ++  G    L  +R +F +
Sbjct: 141 LLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNT-LIHMYSCFGA-GFLGDARNVFER 198

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +   W+ ++ GY R+    +A+VL+  M   G V P+  T   VL + A L + + 
Sbjct: 199 MPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSG-VRPDEVTVIGVLAAAADLGALEL 257

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              +   + + G+   + + NALI   +  G ++ A  VFEG   R +VS+ ++I+  A 
Sbjct: 258 TRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAM 317

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ +F +M+   + PD   F+ + +AC+       G+ +   +    G +   +
Sbjct: 318 EGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYG-IEPKI 376

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
                +++M+ + G++         M M  +   W ++++     G++E
Sbjct: 377 EHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLE 425


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/615 (35%), Positives = 358/615 (58%), Gaps = 51/615 (8%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
           +   + +C    +   G Q+H H++K      +++   LI  Y   G +++A  V +G  
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R++VS+  +I+GY+Q      AL LF +M  +  + + FT   + ++C      +  +Q
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H++V K      S+M + +++++MY K                                
Sbjct: 164 VHSLVVKT--NFESHMFVGSSLLDMYGK-------------------------------- 189

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G I+ AR++FD + +RD VS TA+ISGY+Q+G   +AL+LF ++ S G+  + VT   +
Sbjct: 190 SGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTL 249

Query: 352 LRACVGLGALDFGKRLHQQYI--ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           L +  GL +L++GK++H   +  E   F   I L  ++IDMY+KCG +  +  VF  +P+
Sbjct: 250 LTSLSGLASLNYGKQVHGLILRKELPFF---IVLQNSLIDMYSKCGKLLYSRRVFDNMPQ 306

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             ++   +N+++ G  +HG+G+  + +FR M    +KPD VT + VL  CSHGGLV+EG 
Sbjct: 307 --RSAISWNAMLMGYGRHGIGQEVVQLFRTMT-EEVKPDSVTLLAVLSGCSHGGLVDEGL 363

Query: 470 QFFESMLNYGIKPQ-----MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
             F+ +    +K Q     + HYGC++DLL R G+L +A  LI+ MP++    IW +LL 
Sbjct: 364 DIFDLI----VKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLG 419

Query: 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP 584
           ACR+H N  +GE+  QKLLD+EP +  +YV+LSN+ A    W++  +VRKLM ++ + K 
Sbjct: 420 ACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKE 479

Query: 585 PGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK 644
           P  S+I  +  +H F +S++ HP+ K+I   +K++ + +K+AG+VP+   V+ DVD+E+K
Sbjct: 480 PAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQK 539

Query: 645 ETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIR 704
           E ++  HSEKLA+ FGL+N+    TI++ KNLRIC DCH   K +S++Y REI +RD  R
Sbjct: 540 ERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNR 599

Query: 705 FHLFKKGNCSCMDFW 719
           FHL K G C+C D+W
Sbjct: 600 FHLLKDGACTCGDYW 614



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 163/319 (51%), Gaps = 11/319 (3%)

Query: 19  KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWN 77
           ++L +  Q+H  +V +     +  +++LI  +   G    L  +R +   +   N+  W 
Sbjct: 55  QALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCG---ALDDARNVLDGMPERNVVSWT 111

Query: 78  TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIK 137
            ++ GYS+S    EAL L+  ML  G    N FT   VL SC    S +   Q+H  ++K
Sbjct: 112 AMISGYSQSGRHAEALELFIRMLRAG-CKANEFTLATVLTSCPVHQSIQQVEQVHSLVVK 170

Query: 138 FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL 197
              E  +F+ ++L+  Y   G I  A KVF+    RD VS   +I+GYAQ+     AL L
Sbjct: 171 TNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDL 230

Query: 198 FRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257
           FR++  S +Q +  TF  + ++ + L     GKQ H ++ +    +   ++L+ ++I+MY
Sbjct: 231 FRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKE--LPFFIVLQNSLIDMY 288

Query: 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR---DLVSWT 314
           +KCG +  + RVF  M   +S  +W++M+ GY R G  +   QLF  M +    D V+  
Sbjct: 289 SKCGKLLYSRRVFDNMP-QRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLL 347

Query: 315 AMISGYSQVGGFSQALELF 333
           A++SG S  G   + L++F
Sbjct: 348 AVLSGCSHGGLVDEGLDIF 366


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/670 (35%), Positives = 365/670 (54%), Gaps = 53/670 (7%)

Query: 64  LFSQIDNPN-------------IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
           ++S++D PN             +  W  L+ G  ++     AL LY S + +  + PN+F
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSAL-LYFSKMRRENIKPNDF 59

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TFP    +   L    +G QIH   +K G   D F+  +    YS  G    A ++F+  
Sbjct: 60  TFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             R++  +N  I+       P  A+  F + +    +PD  TF A  +AC +     +G+
Sbjct: 120 PPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGR 179

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           Q H +V ++ G  G ++ +   +I++Y KC  + +AE VF+ MG  +++ +W +M++   
Sbjct: 180 QLHGLVIRS-GFEG-DVSVANGIIDVYGKCKEVELAEMVFNGMG-RRNSVSWCTMVAACE 236

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           +  + E+A  +F                             L G+ E  GI   +  + +
Sbjct: 237 QNDEKEKACVVF-----------------------------LMGRKE--GIELTDYMVSS 265

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           V+ A  G+  L+FG+ +H   ++  V G +IF+ +A++DMY KCGSI+    VF+++P+ 
Sbjct: 266 VISAYAGISGLEFGRSVHALAVKACVEG-DIFVGSALVDMYGKCGSIEDCEQVFHEMPE- 323

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            + +  +N++ISG A  G  + ++ +F EM+   +  + VT + VL ACS GG V+ G +
Sbjct: 324 -RNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACSRGGAVKLGNE 381

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
            FESM + Y I+P  EHY C+ D+L R G ++ AY  +Q MP      +W ALL ACR++
Sbjct: 382 IFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVY 441

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
              ++G+IA   L  L+P    ++VLLSNM A   RW+EA  VRK M D GI+K  G S+
Sbjct: 442 GEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSW 501

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           +     +H F A   SH +  EI+ ML  +  ++++AGY+P+T   ++D++EEEK T V 
Sbjct: 502 VTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVG 561

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           YHSEK+ALAFGLI       IRITKNLRICGDCH AFK +S I  REI+VRD  RFH F+
Sbjct: 562 YHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFR 621

Query: 710 KGNCSCMDFW 719
              CSC DFW
Sbjct: 622 DSQCSCRDFW 631



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 161/339 (47%), Gaps = 13/339 (3%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +  A L +C   + L    Q+HG ++ SG    +S ++ +I  +    CK  +  + ++F
Sbjct: 161 TFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYG--KCKE-VELAEMVF 217

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + +   N   W T++    ++D  ++A V++     +GI    ++    V+++ A +S  
Sbjct: 218 NGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGI-ELTDYMVSSVISAYAGISGL 276

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  +H   +K  +E D+F+ +AL+  Y   G I +  +VF     R+LVS+N +I+GY
Sbjct: 277 EFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGY 336

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
           A   +   A+ LF +MQ   +  +  T + + SAC+     ++G +    + ++   +  
Sbjct: 337 AHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACSRGGAVKLGNEIFESM-RDRYRIEP 394

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD-- 303
                  + +M  + G++  A      M +  + + W ++++     G+ E  +   D  
Sbjct: 395 GAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNL 454

Query: 304 -QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            ++D +D  +   + + ++  G + +A  +  +M+ +GI
Sbjct: 455 FKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGI 493


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/533 (41%), Positives = 325/533 (60%), Gaps = 8/533 (1%)

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
           P  AL LF  +  S   PD   +   F++C    D     Q HA   K  G V S+  ++
Sbjct: 56  PHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKR-GLVASHRRVR 114

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA-RQLFDQMDQRD 309
             +++ YA CG++  A RVF   G      AW+ ++ GY +EG  E   R  F +M  RD
Sbjct: 115 CRLVHAYAVCGMLPHARRVFDG-GTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRD 173

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKM-ESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
            VSW  ++S     G + +A+ +F +M  S    PD VT+V+V+ A   LGAL  G   H
Sbjct: 174 SVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAH 233

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
             Y+          L++A+I+MY+KCG I+ A+ VF  +    +++  +N++++G   +G
Sbjct: 234 A-YVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGK-RSLDTWNAMLAGFTANG 291

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHY 487
             E ++ +F  ME   L P+ +TF TVL ACSHGGLVEEG ++F+ M   YGI+P + HY
Sbjct: 292 YSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHY 351

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
           GCMVDL  R G  ++A  +IQ+MP + ++ + +ALL ACR H+N ++G+  G +L++   
Sbjct: 352 GCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAA 411

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           +  A YVLLSN+ A    W    +VRKLM D G+ K PG S +E NG +H F++  KSH 
Sbjct: 412 NDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHS 471

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSRS 666
           + ++I  ML ++  +LKS+GY P+T QV+ D+D+E+ KE+ ++ HSEKLA+AFGLI++  
Sbjct: 472 RKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAP 531

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              IR+  NLRICGDCH A KL+S+IY R I+VRDA RFH F+KG+CSC D+W
Sbjct: 532 GTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 160/375 (42%), Gaps = 71/375 (18%)

Query: 88  SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL-EFDLFI 146
           +P  AL L+  +L  G   P+   +     SCAR     +  Q+H H  K GL      +
Sbjct: 55  NPHLALRLFDHLLRSG-ADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRV 113

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ------------VKEPC-- 192
           R  L+H Y++ G + +A +VF+G    D+V++N L+ GYAQ             + P   
Sbjct: 114 RCRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRD 173

Query: 193 ------------------PALWLFRKMQDS--CIQPDAFTFVAMFSACTELNDPRIGKQF 232
                              A+ +FR+M  S  C QPD  T V++ SA   L     G   
Sbjct: 174 SVSWNTVLSWCVVNGEYDEAIAVFREMLASQEC-QPDRVTLVSVVSAIAYLGALAHGLWA 232

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA V++   C+     L +A+INMY+KCG +  A  VF  +G  +S   W++M++G+T  
Sbjct: 233 HAYVFRK--CIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTAN 290

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G  ER                               ALELF +MES  + P+++T   VL
Sbjct: 291 GYSER-------------------------------ALELFTRMESTRLMPNKITFNTVL 319

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC   G ++ G +  Q+         +I     ++D++ + G  + A  +   +P    
Sbjct: 320 NACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPME-P 378

Query: 413 TVSLFNSIISGLAQH 427
             S+  +++     H
Sbjct: 379 DASMLKALLGACRTH 393



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 123/266 (46%), Gaps = 4/266 (1%)

Query: 37  NHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           N  ++ + L+  +A  G    L R    F+++ + +   WNT++     +    EA+ ++
Sbjct: 140 NDMVAWNCLLRGYAQEGGDEDLLRD--FFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVF 197

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             ML+     P+  T   V+++ A L +   G   H ++ +  +E +  + +ALI+ YS 
Sbjct: 198 REMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSK 257

Query: 157 FGYINNAHKVFEG-SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
            G+I  A  VF+     R L ++N ++ G+        AL LF +M+ + + P+  TF  
Sbjct: 258 CGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNT 317

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + +AC+       G ++   + +  G +  ++     +++++ + G+   AE +  TM M
Sbjct: 318 VLNACSHGGLVEEGMKYFQRMSRFYG-IEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPM 376

Query: 276 SKSTAAWSSMISGYTREGKIERARQL 301
               +   +++        +E  +++
Sbjct: 377 EPDASMLKALLGACRTHKNLELGKKV 402


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/728 (33%), Positives = 390/728 (53%), Gaps = 58/728 (7%)

Query: 7   EHSSLLALLESCKSLKQALQIHGQIVH-------SGLNHHISSSQLISFFALSGCKNGLF 59
           +  +L+++L  C   ++ L   G  VH       SGLN  I+S+ LI  +    C+  L 
Sbjct: 5   QRQNLVSILRVCT--RKGLSDQGGQVHCYLLKSGSGLNL-ITSNYLIDMYC--KCREPLM 59

Query: 60  RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119
             ++ F  +   N+  W+ LM G+  +   + +L L++ M  +GI  PN FTF   L +C
Sbjct: 60  AYKV-FDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY-PNEFTFSTNLKAC 117

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
             L++ + G QIH   +K G E  + + N+L+  YS  G IN A KVF   + R L+S+N
Sbjct: 118 GLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWN 177

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQ--PDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
            +I G+        AL  F  MQ++ I+  PD FT  ++  AC+       GKQ H  + 
Sbjct: 178 AMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLV 237

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           ++     S+  +  +++++Y KCG +  A + F  +   K+  +WSS+I GY +EG+   
Sbjct: 238 RSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI-KEKTMISWSSLILGYAQEGE--- 293

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
                                       F +A+ LF +++ L    D   + +++     
Sbjct: 294 ----------------------------FVEAMGLFKRLQELNSQIDSFALSSIIGVFAD 325

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
              L  GK++ Q     +  G    +  +V+DMY KCG +D A   F ++   LK V  +
Sbjct: 326 FALLRQGKQM-QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEM--QLKDVISW 382

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML- 476
             +I+G  +HGLG+ S+ +F EM    ++PD V ++ VL ACSH G+++EG++ F  +L 
Sbjct: 383 TVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 442

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            +GIKP++EHY C+VDLL R GRL EA  LI +MP   N  IW+ LL+ CR+H + ++G+
Sbjct: 443 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGK 502

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
             G+ LL ++  + A+YV++SN+  +   W E    R+L +  G++K  G S++E    +
Sbjct: 503 EVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 562

Query: 597 HRFLASKKSHPQTKEIELMLKDMTMKLKSA-GYVPNTVQVVFDVDEEEKETVVSYHSEK- 654
           H F + + SHP T  I+  LK+   +L+   GYV      + D+D+E KE  +  HSEK 
Sbjct: 563 HFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKL 622

Query: 655 ---LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
              LALA G +N + K TIR+ KNLR+C DCH   K LS+I +   +VRDA+RFH F+ G
Sbjct: 623 AIGLALATGGLNQKGK-TIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDG 681

Query: 712 NCSCMDFW 719
            CSC D+W
Sbjct: 682 CCSCGDYW 689


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/733 (33%), Positives = 404/733 (55%), Gaps = 61/733 (8%)

Query: 6   LEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS- 61
           +E +  + +L+ C   K +  A +IH  IV +G +     + L++F      K G   + 
Sbjct: 67  VESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAH---KDAFLMTFLVNVYAKCGTMETA 123

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           R +F ++   N+  W TLM GY     P+ A+ ++  ML  G   P N+T    L++ + 
Sbjct: 124 RKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAG-AYPTNYTLGTALSASSD 182

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
           L S + G QIH + IK+ +EFD  I N+L   YS  G +  A K F     ++++S+ T+
Sbjct: 183 LHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTV 242

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I+ +    E    L  F +M   C++P+ FT  +  S C  +    IG Q H++  K LG
Sbjct: 243 ISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIK-LG 301

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
              SN+ +K +++ +Y KCG                    W            I  A++L
Sbjct: 302 -FESNLPIKNSIMYLYLKCG--------------------W------------IHEAKKL 328

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGF-----------SQALELFGKMESLGIHPDEVTMVA 350
           FD+M+   LV+W AMI+G++++  F           ++AL +F K+   G+ PD  T  +
Sbjct: 329 FDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSS 388

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL  C  L AL+ G+++H Q I+   F  ++ + TA+++MY KCGSI+ A   F ++  +
Sbjct: 389 VLSVCSSLVALEQGEQVHAQTIKTG-FLSDVVVGTALVNMYNKCGSIERASKAFVEM--S 445

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
           ++T+  + S+I+G AQ+G  + ++ +F +M L G++P+ +TFV VL ACSH G+V+E   
Sbjct: 446 IRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALD 505

Query: 471 FFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
           +F+ M N Y I P M+HY C++D+  R GRLDEA+  I+ M  + N  IW  L+A CR  
Sbjct: 506 YFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQ 565

Query: 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589
              ++G  A ++LL+L+P     Y LL NM     +W+E  +VRK+M +  + +   WS+
Sbjct: 566 GKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSW 625

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYV-PNTVQVVFDVDEEEKE--- 645
           I     ++ F  + +SH Q+ E+  +L ++  K KS GY    +++V  + ++ ++E   
Sbjct: 626 ISIKDKIYSFKRNARSHAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKAL 685

Query: 646 TVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRF 705
           T + YHSEKLA+AFGL+N+ +   IR+TK++ +C DCH   +++S +  REI++RD+ R 
Sbjct: 686 TSIVYHSEKLAIAFGLLNTSNAVPIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRL 745

Query: 706 HLFKKGNCSCMDF 718
           H F  G+CSC DF
Sbjct: 746 HKFINGHCSCGDF 758


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 353/618 (57%), Gaps = 38/618 (6%)

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           GI + +      +L S AR  +   G   H  II+ GL  D    N L++ YS  G + +
Sbjct: 41  GIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVES 100

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A K+F+    R LVS+NT++  + Q  +   AL LF +MQ        FT  ++  AC  
Sbjct: 101 ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 160

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
                  KQ H    K    + SN+ + TA++++YAKCGL                    
Sbjct: 161 KCCVFECKQLHGFALKT--ALDSNVFVGTALLDVYAKCGL-------------------- 198

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       ++ A  +F+ M +R  V+W++M++GY Q   + +AL LF + +++G+ 
Sbjct: 199 ------------VKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLE 246

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            ++ T+ + L AC    AL  GK++     +  + G NIF+ +++IDMYAKCG I+ A +
Sbjct: 247 HNQFTISSALSACAARAALIEGKQVQAVSCKTGI-GSNIFVISSLIDMYAKCGIIEEAYT 305

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + +  K V L+N+I+SG ++H     ++  F +M+ MG+ P+ +T+++VL ACSH 
Sbjct: 306 VFSSVEE--KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHL 363

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLVE+G+++F+ M+  + + P + HY CMVD+L R G L EA   I  MP+DA + +W +
Sbjct: 364 GLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGS 423

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LLA+CR++RN ++ E+A + L ++EP +  ++VLLSN+ A   RWEE  + R L+ +S  
Sbjct: 424 LLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKA 483

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G S+IE    +H F+  +++HP+  EI L L+D+  ++K  GY   T   + DV+E
Sbjct: 484 KKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEE 543

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
             K+ ++ +HSEKLAL FG++       IRI KNLRICGDCH   KL S I  REI+VRD
Sbjct: 544 SRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRD 603

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH FK G CSC +FW
Sbjct: 604 TNRFHHFKNGYCSCGEFW 621



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 219/439 (49%), Gaps = 55/439 (12%)

Query: 9   SSLLALLESCKSLKQALQ---IHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRS-RI 63
           S L  LL+S    + A++    H QI+  GL    I+S+ L++ ++    K GL  S R 
Sbjct: 48  SELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYS----KCGLVESARK 103

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNT++  ++++   ++ALVL+  M  +G  S + FT   V+ +CA   
Sbjct: 104 LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCACAAKC 162

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
                 Q+H   +K  L+ ++F+  AL+  Y+  G + +A+ VFE    R  V++++++ 
Sbjct: 163 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 222

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY Q +    AL LF + Q   ++ + FT  +  SAC        GKQ  AV  K    +
Sbjct: 223 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKT--GI 280

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           GSN+ + +++I+MYAKCG++  A  VFS++   K+   W++++SG++R  +         
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRHVR--------- 330

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                   S  AMI               F KM+ +GI P+++T ++VL AC  LG ++ 
Sbjct: 331 --------SLEAMI--------------YFEKMQQMGICPNDITYISVLSACSHLGLVEK 368

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G++     I       N+   + ++D+  + G +  A     ++P +  T S++ S+++ 
Sbjct: 369 GRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFD-ATASMWGSLLA- 426

Query: 424 LAQHGLGETSIAVFREMEL 442
                    S  ++R +EL
Sbjct: 427 ---------SCRIYRNLEL 436


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 339/594 (57%), Gaps = 38/594 (6%)

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           ++ A  +F+    ++   +N LI G A+      ++  F  M    I PD  TF  +  +
Sbjct: 90  VDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKS 149

Query: 220 CTELNDPRIGKQFHAVVYK---------------------NLGCV------------GSN 246
              L++  +G+  H  + K                      LG                +
Sbjct: 150 AAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGS 209

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +L+   +I+ Y + G +  A  +F +M   K T +W+S+I+G+ + G + RA++LF +M 
Sbjct: 210 VLIWNVLIHGYCRMGDLVKATELFDSMP-KKDTGSWNSLINGFMKMGDMGRAKELFVKMP 268

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           ++++VSWT M++G+SQ G   +ALE F  M   G  P++ T+V+ L AC  +GALD G R
Sbjct: 269 EKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLR 328

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H  Y+    F  N+ + TA++DMYAKCG+I+ A  VF++  +  K + +++ +I G A 
Sbjct: 329 IHN-YLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKE--KGLLIWSVMIWGWAI 385

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQME 485
           HG    ++  F  M+  G KPD V F+ VL ACSH G V EG +FF++M   Y I+P M+
Sbjct: 386 HGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMK 445

Query: 486 HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
           HY  +VD+L R GRLDEA   I++MP   + V+W AL  ACR H+N ++ E+A +KLL L
Sbjct: 446 HYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQL 505

Query: 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKS 605
           EP H   YV LSN  A   RW++A +VR  M D G  K PGWS+IE +  LHRF+A   +
Sbjct: 506 EPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNT 565

Query: 606 HPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSR 665
           H +  EI   L +++   +  GY      V+ +++EEEKE  + YHSEKLALAFG++++R
Sbjct: 566 HNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTR 625

Query: 666 SKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
              T+RI KNLR+C DCH   K  S++ +REI++RD  RFH F  G CSC D+W
Sbjct: 626 PGTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 344/557 (61%), Gaps = 12/557 (2%)

Query: 93  LVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS-GCQIHCHIIKFGLEFDLFIRNALI 151
           L +Y  ML++G   P+ +TFP +L +    +   + G  +H H++KFG+E +  + ++L+
Sbjct: 3   LRVYVGMLARG-ARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLV 61

Query: 152 HFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
             Y+  G    A  + +   AR     V +N LI+G+ + ++   +   F  M  + + P
Sbjct: 62  LMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVP 121

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
              T++ + SAC +     +G Q H  V  +   V  ++ +  A+I+MYA+C  M+ A  
Sbjct: 122 TPVTYITVLSACGKDKYIWLGMQVHKCVVAS--GVLPDLKVGNALIDMYAECSEMDAAWE 179

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           +F  M + ++T +W+S+ISG+ R G++++AR LFD M +RD VSWTAMI GY Q G F +
Sbjct: 180 LFEGMEV-RNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFRE 238

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           ALE+F +M+   +  DE TMV+V+ AC  LGAL+ G+   + Y+       + F+  A++
Sbjct: 239 ALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGE-WARIYMSRHGIKMDTFVGNALV 297

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           DMY+KCGSI  AL VF ++   ++    + ++I GLA +G GE +I +F  M  +   PD
Sbjct: 298 DMYSKCGSIQQALGVFKEM--YIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPD 355

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            VTF+ VL AC+H GLV++G+ FF SM  +YGI P + H+GC++DLL R G+L EA   I
Sbjct: 356 EVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETI 415

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
            +MP   NS IW  LLAACR+H N++IG++A + LL+L+ ++G  Y+LLSN+ A++ RWE
Sbjct: 416 GNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWE 475

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           + R++R+++ + GI+K PG S IE NGT+H F+A  +SHP +KEI   L  +   LK AG
Sbjct: 476 DVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAG 535

Query: 628 YVPNTVQVVFDVDEEEK 644
           YVP+  ++   V  EEK
Sbjct: 536 YVPDLTEIFVQVTREEK 552



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 194/442 (43%), Gaps = 78/442 (17%)

Query: 27  IHGQIVHSG--LNHHISSSQLISFFALSGCKNGLFRSRILFSQI----DNPNIFIWNTLM 80
           +H  +V  G  LN H++SS L+  +A  G  +G     +L +      D P   +WN L+
Sbjct: 41  VHAHVVKFGMELNAHVASS-LVLMYAARG--DGAVARTLLDAWPARGGDTP--VVWNALI 95

Query: 81  RGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL 140
            G+ RS   + +   +  M+  G+V P   T+  VL++C +      G Q+H  ++  G+
Sbjct: 96  SGHRRSRQFRLSCCSFVDMVRTGVV-PTPVTYITVLSACGKDKYIWLGMQVHKCVVASGV 154

Query: 141 EFDLFIRNALIHFYS-------------------------------IFGYINNAHKVFEG 169
             DL + NALI  Y+                                 G ++ A  +F+ 
Sbjct: 155 LPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDC 214

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
              RD VS+  +I+GY Q  +   AL +FR+MQ S ++ D FT V++ +AC +L     G
Sbjct: 215 MPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETG 274

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +   A +Y +   +  +  +  A+++MY+KCG                            
Sbjct: 275 EW--ARIYMSRHGIKMDTFVGNALVDMYSKCG---------------------------- 304

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
                I++A  +F +M  RD  +WTA+I G +  G   +A+ +F +M  +   PDEVT +
Sbjct: 305 ----SIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFI 360

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
            VL AC   G +D G+        +     N+     +ID+  + G +  AL     +P 
Sbjct: 361 GVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPM 420

Query: 410 NLKTVSLFNSIISGLAQHGLGE 431
              + +++ ++++    HG  E
Sbjct: 421 RPNS-AIWGTLLAACRVHGNSE 441


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 353/618 (57%), Gaps = 38/618 (6%)

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           GI + +      +L S AR  +   G   H  II+ GL  D    N L++ YS  G + +
Sbjct: 14  GIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVES 73

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A K+F+    R LVS+NT++  + Q  +   AL LF +MQ        FT  ++  AC  
Sbjct: 74  ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 133

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
                  KQ H    K    + SN+ + TA++++YAKCGL                    
Sbjct: 134 KCCVFECKQLHGFALKT--ALDSNVFVGTALLDVYAKCGL-------------------- 171

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                       ++ A  +F+ M +R  V+W++M++GY Q   + +AL LF + +++G+ 
Sbjct: 172 ------------VKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLE 219

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            ++ T+ + L AC    AL  GK++     +  + G NIF+ +++IDMYAKCG I+ A +
Sbjct: 220 HNQFTISSALSACAARAALIEGKQVQAVSCKTGI-GSNIFVISSLIDMYAKCGIIEEAYT 278

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + +  K V L+N+I+SG ++H     ++  F +M+ MG+ P+ +T+++VL ACSH 
Sbjct: 279 VFSSVEE--KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHL 336

Query: 463 GLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLVE+G+++F+ M+  + + P + HY CMVD+L R G L EA   I  MP+DA + +W +
Sbjct: 337 GLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGS 396

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LLA+CR++RN ++ E+A + L ++EP +  ++VLLSN+ A   RWEE  + R L+ +S  
Sbjct: 397 LLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKA 456

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G S+IE    +H F+  +++HP+  EI L L+D+  ++K  GY   T   + DV+E
Sbjct: 457 KKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEE 516

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
             K+ ++ +HSEKLAL FG++       IRI KNLRICGDCH   KL S I  REI+VRD
Sbjct: 517 SRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRD 576

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH FK G CSC +FW
Sbjct: 577 TNRFHHFKNGYCSCGEFW 594



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 219/439 (49%), Gaps = 55/439 (12%)

Query: 9   SSLLALLESCKSLKQALQ---IHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRS-RI 63
           S L  LL+S    + A++    H QI+  GL    I+S+ L++ ++    K GL  S R 
Sbjct: 21  SELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYS----KCGLVESARK 76

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   ++  WNT++  ++++   ++ALVL+  M  +G  S + FT   V+ +CA   
Sbjct: 77  LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCACAAKC 135

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
                 Q+H   +K  L+ ++F+  AL+  Y+  G + +A+ VFE    R  V++++++ 
Sbjct: 136 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 195

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY Q +    AL LF + Q   ++ + FT  +  SAC        GKQ  AV  K    +
Sbjct: 196 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKT--GI 253

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
           GSN+ + +++I+MYAKCG++  A  VFS++   K+   W++++SG++R  +         
Sbjct: 254 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRHVR--------- 303

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                   S  AMI               F KM+ +GI P+++T ++VL AC  LG ++ 
Sbjct: 304 --------SLEAMI--------------YFEKMQQMGICPNDITYISVLSACSHLGLVEK 341

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           G++     I       N+   + ++D+  + G +  A     ++P +  T S++ S+++ 
Sbjct: 342 GRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFD-ATASMWGSLLA- 399

Query: 424 LAQHGLGETSIAVFREMEL 442
                    S  ++R +EL
Sbjct: 400 ---------SCRIYRNLEL 409


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/608 (36%), Positives = 338/608 (55%), Gaps = 44/608 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L S  RL + +   Q+H HII  GL     +   LI      G I  A ++F      D
Sbjct: 97  LLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 153

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
              +++L+   ++       +  +R+M  S      +TF ++  AC +L+  R+GK+ H+
Sbjct: 154 SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHS 213

Query: 235 VVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            V   + C  GS+M ++ A+I +YAK   M +A++V                        
Sbjct: 214 HV---MVCGYGSDMYVQAALIALYAKASDMKVAKKV------------------------ 246

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                   FD M QR +++W ++ISGY Q G   +++ LF  M   G  PD  T+V++L 
Sbjct: 247 --------FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS 298

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           +C  LGALDFG  LH  Y +   F  N+ L T++I+MY +CG++  A  VF  + +  + 
Sbjct: 299 SCSQLGALDFGCWLHD-YADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE--RN 355

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + ++ISG   HG G  ++ +F EM   G +P+ +TFV VL AC+H GL+++G++ F 
Sbjct: 356 VVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFS 415

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS-MPYDANSVIWRALLAACRLHRN 531
           SM   YG+ P +EH  CMVD+  R G L++AY  I+  +P +    +W ++L ACR+HRN
Sbjct: 416 SMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRN 475

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             +G    + +L +EP++  HYV+LSN+ A   R +    VR +M    ++K  G+S IE
Sbjct: 476 FDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIE 535

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            N   + F    KSHPQT  I   L ++  +   +GYVP    ++ D++EEE++  + YH
Sbjct: 536 INRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYH 595

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLALAFGL+ +   ETIRI KNLRIC DCH A K +S I  REI+VRD  RFH FK G
Sbjct: 596 SEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDG 655

Query: 712 NCSCMDFW 719
           +CSC+D+W
Sbjct: 656 SCSCLDYW 663



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 201/398 (50%), Gaps = 38/398 (9%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           ALL S   L+   Q+H  I+ SGL  H S S L    +L      +  +R LF  + NP+
Sbjct: 96  ALLRSGPRLRNLQQVHAHIIVSGL--HRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 153

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
            F++++L++  S+     + ++ Y  ML  G    +N+TF  V+ +CA LS+ + G +IH
Sbjct: 154 SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG-APQSNYTFTSVIKACADLSALRLGKEIH 212

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            H++  G   D++++ ALI  Y+    +  A KVF+    R ++++N+LI+GY Q   P 
Sbjct: 213 SHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQ 272

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            ++ LF  M +S  QPD+ T V++ S+C++L     G   H   Y +      N++L T+
Sbjct: 273 ESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHD--YADGNGFDLNVVLGTS 330

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +INMY +CG ++ A  VF +M   ++   W++MISGY                       
Sbjct: 331 LINMYTRCGNVSKAREVFDSM-KERNVVTWTAMISGYG---------------------- 367

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
               + GY +     QA+ELF +M + G  P+ +T VAVL AC   G +D G+R+     
Sbjct: 368 ----MHGYGR-----QAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 418

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPK 409
           E       +     ++DM+ + G ++ A     K IPK
Sbjct: 419 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPK 456


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 328/549 (59%), Gaps = 42/549 (7%)

Query: 174  DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
            D    NT++   A    P  AL L R+       PD  T+  +  AC  L   R G+  H
Sbjct: 771  DPFPLNTVLRIAAGSPRPRVALELHRR---RLALPDTHTYPPLIQACARLLALREGECLH 827

Query: 234  AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            A   KN G V + + ++ +++++Y  CGL                               
Sbjct: 828  AEAAKN-GFV-TLVFVQNSLVHLYGACGLF------------------------------ 855

Query: 294  KIERARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
              E A ++FD+M    R+LVSW +M++ ++  G  ++ L +F +M  +   PD  T+V+V
Sbjct: 856  --ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSV 913

Query: 352  LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
            L AC   GAL  G+R+H  Y+E V    N  ++ A+ID+YAKCGS++ A  +F ++    
Sbjct: 914  LTACAEFGALALGRRVHV-YVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLG- 971

Query: 412  KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471
            +TV  + S+I GLA +G G+ ++ +F  ME   L P  +T V VL ACSH GLV++G ++
Sbjct: 972  RTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRY 1031

Query: 472  FESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
            F+ M  +YGI P++EH GCMVDLL R GR++EAY  I +MP + N+V+WR LL +C +H+
Sbjct: 1032 FDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHK 1091

Query: 531  NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590
              ++G++A ++L++L+P H   YVLLSN+ A    W +   +RK M    ++K PG S +
Sbjct: 1092 KLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLV 1151

Query: 591  EHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSY 650
            E   +++ F+   +SHP++++I  ML ++  +L+  GY+P T  V+ D++EEEKET ++Y
Sbjct: 1152 ELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNY 1211

Query: 651  HSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKK 710
            HSE+LA+AF L+ S     IRI KNLR+CGDCH+AF L+S++Y REI+VRD  RFH F+ 
Sbjct: 1212 HSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQG 1271

Query: 711  GNCSCMDFW 719
            G CSC D+W
Sbjct: 1272 GACSCKDYW 1280



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 194/419 (46%), Gaps = 77/419 (18%)

Query: 61   SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
            SR+L     +P  F  NT++R  + S  P+ AL L+   L+     P+  T+P ++ +CA
Sbjct: 762  SRLLPHGPLDP--FPLNTVLRIAAGSPRPRVALELHRRRLAL----PDTHTYPPLIQACA 815

Query: 121  RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSLARDLVSY 178
            RL + + G  +H    K G    +F++N+L+H Y   G   +AHKVF+      R+LVS+
Sbjct: 816  RLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSW 875

Query: 179  NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
            N+++N +A    P   L +F +M      PD FT V++ +AC E     +G++ H  V K
Sbjct: 876  NSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEK 935

Query: 239  NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
             +G V  N  +  A+I++YAKCG +N A R+F  MG+ ++  +W+S+I G    G  + A
Sbjct: 936  -VGLV-ENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEA 993

Query: 299  RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
             +LF  M++  LV                               P E+TMV VL AC   
Sbjct: 994  LELFSLMEREKLV-------------------------------PTEITMVGVLYACSHC 1022

Query: 359  GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN 418
            G +D G R   +  E+      I     ++D+  + G ++ A                ++
Sbjct: 1023 GLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEA----------------YD 1066

Query: 419  SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477
             II+                    M L+P+ V + T+L +C+    +E GK  +E ++ 
Sbjct: 1067 YIIT--------------------MPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVE 1105



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 72   NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
            N+  WN+++  ++ +  P E L ++  ML     +P+ FT   VL +CA   +   G ++
Sbjct: 871  NLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDF-APDGFTIVSVLTACAEFGALALGRRV 929

Query: 132  HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLINGYAQVKE 190
            H ++ K GL  +  + NALI  Y+  G +N+A ++FE   L R +VS+ +LI G A    
Sbjct: 930  HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 989

Query: 191  PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
               AL LF  M+   + P   T V +  AC+       G ++   + ++ G +   +   
Sbjct: 990  GKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYG-ISPRIEHL 1048

Query: 251  TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
              ++++  + G +  A     TM +  +   W +++       K+E  +  ++++ + D
Sbjct: 1049 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELD 1107


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/667 (35%), Positives = 370/667 (55%), Gaps = 31/667 (4%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           ++  W  L+ GY+++    +++ ++ +MLS GI  P+      +L + + L  F+    +
Sbjct: 302 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGI-QPDAVAVVKILAASSELGIFQQALCL 360

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
           H ++++ G   ++F+  +LI  YS  G + +A K+F+G + RD+V ++++I  Y      
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRG 420

Query: 192 CPALWLFRKMQD------SC----IQPDAFTFVAMFSACTELNDPRIGKQFHAVV-YKNL 240
             AL +F +M        SC    +QP     +A+ S     + P   K F+    ++ L
Sbjct: 421 GEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWL 480

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
           G      +  T            +M++      G+   +   +     Y    +I+ A  
Sbjct: 481 GHFWE--IFPTYPFQA------ADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASI 532

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-------EVTMVAVLR 353
           +F+ +       W  MI G++  G F  +LEL+ KM   G+ PD        V++++VL 
Sbjct: 533 VFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLL 592

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           AC  LGAL  G+  H  Y+    F  +I + TA++DMY+KCGS+D A  +F +     K 
Sbjct: 593 ACGNLGALRKGEWFHS-YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAG--KD 649

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           +  ++++I+    HG G  +I +F +M   G++P  VTF  VL ACSH GL+EEGK +F+
Sbjct: 650 LVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQ 709

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            M   + I  ++ +Y CMVDLL R G+L EA  LI++MP + ++ IW +LL ACR+H N 
Sbjct: 710 LMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNL 769

Query: 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592
            + E     L  L+P H  ++VLLSN+ A   RW E  +VRK+M   G  K  G+S +E+
Sbjct: 770 DLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEY 829

Query: 593 NGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHS 652
           +  +H+F    +SHPQ +++   L+++   +K  GYVP T  V+ D++EE KE  +SYHS
Sbjct: 830 DNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHS 889

Query: 653 EKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGN 712
           E+LA+AFGLIN+    T+RITKNLRICGDCH A KL+S+I  R I+VRD  RFH F+ G 
Sbjct: 890 ERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGV 949

Query: 713 CSCMDFW 719
           CSC D+W
Sbjct: 950 CSCGDYW 956



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 215/467 (46%), Gaps = 80/467 (17%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L+ L ++C + +   Q+H Q+  +G+ H    +++L S +A       L  +R +F +  
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA---SLQAARKVFDETP 63

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
           +PN+ +WN+ +R Y R    +E L L+  M+     +P+NFT P  L +CA L   + G 
Sbjct: 64  HPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK 123

Query: 130 QIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            IH    K   +  D+F+ +AL+  YS  G +  A KVFE     D V + +++ GY Q 
Sbjct: 124 VIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQN 183

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +P  AL LF +M                                      + C   ++ 
Sbjct: 184 NDPEEALALFSQM------------------------------------VMMDCFDGDLP 207

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ- 307
           L  +++N+YAK G   +A  +FS M   K   +WS+MI+ Y        A  LF +M + 
Sbjct: 208 LVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMIACYANNEAANEALNLFHEMIEK 266

Query: 308 ----------------------------------RDLVSWTAMISGYSQVGGFSQALELF 333
                                             +D+VSW A++SGY+Q G   +++ +F
Sbjct: 267 RFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVF 326

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
             M S GI PD V +V +L A   LG       LH  Y+    F  N+F+  ++I++Y+K
Sbjct: 327 RNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH-GYVVRSGFNSNVFVGASLIELYSK 385

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           CGS+  A+ +F  +   ++ V +++S+I+    HG G  ++ +F +M
Sbjct: 386 CGSLGDAVKLFKGMI--VRDVVIWSSMIAAYGIHGRGGEALEIFDQM 430



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 199/455 (43%), Gaps = 79/455 (17%)

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           +S  Q+H  + K G+  D F    L   Y+    +  A KVF+ +   ++  +N+ +  Y
Sbjct: 18  RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY 77

Query: 186 AQVKEPCPALWLFRKMQDSCIQ-PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            + K+    L LF  M  +  + PD FT      AC  L    +GK  H    KN   +G
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKN-DEIG 136

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           S+M + +A++ +Y+KCG M  A +VF        T  W+SM++GY +    E A  LF Q
Sbjct: 137 SDMFVGSALVELYSKCGQMGEALKVFEEF-QRPDTVLWTSMVTGYQQNNDPEEALALFSQ 195

Query: 305 M------------------------------------DQRDLVSWTAMISGYSQVGGFSQ 328
           M                                     ++D++SW+ MI+ Y+     ++
Sbjct: 196 MVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANE 255

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           AL LF +M      P+ VT+V+ L+AC     L+ GK++H+                   
Sbjct: 256 ALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHK------------------- 296

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
                       ++V+       K V  + +++SG AQ+G+   S+ VFR M   G++PD
Sbjct: 297 ------------IAVW-------KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 337

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            V  V +L A S  G+ ++       ++  G    +     +++L ++ G L +A  L +
Sbjct: 338 AVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFK 397

Query: 509 SMPYDANSVIWRALLAACRLH-RNAKIGEIAGQKL 542
            M    + VIW +++AA  +H R  +  EI  Q +
Sbjct: 398 GMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQMI 431



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 228/532 (42%), Gaps = 98/532 (18%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           + L++ +A +GC+     +  LFS++   ++  W+T++  Y+ +++  EAL L+  M+ K
Sbjct: 210 NSLLNLYAKTGCEK---IAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEK 266

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
               PN+ T    L +CA   + + G +IH                              
Sbjct: 267 RF-EPNSVTVVSALQACAVSRNLEEGKKIH------------------------------ 295

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
                + ++ +D+VS+  L++GYAQ      ++ +FR M    IQPDA   V + +A +E
Sbjct: 296 -----KIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSE 350

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           L   +     H  V ++     SN+ +  ++I +Y+KCG +  A ++F  M + +    W
Sbjct: 351 LGIFQQALCLHGYVVRS--GFNSNVFVGASLIELYSKCGSLGDAVKLFKGM-IVRDVVIW 407

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
           SSMI+ Y   G+   A ++FDQM Q        ++ G +     S   +         + 
Sbjct: 408 SSMIAAYGIHGRGGEALEIFDQMIQ--------VMQGITSCYQISMQPQ---------VQ 450

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENV--VF-----------GRNIF------- 382
           P        L   +      F  R H +++ +   +F             NIF       
Sbjct: 451 PPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYD 510

Query: 383 --LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
             + T    MY     ID A  VF  IP       L+N +I G A  G   +S+ ++ +M
Sbjct: 511 SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSF--LWNVMIRGFATDGRFLSSLELYSKM 568

Query: 441 ELMGLKPDG-------VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493
              GLKPD        V+ ++VL AC + G + +G+ F   ++  G +  +     ++D+
Sbjct: 569 MEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM 628

Query: 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545
            ++ G LD A  L        + V W A++A+  +H +       G+K +DL
Sbjct: 629 YSKCGSLDLARCLFDETA-GKDLVCWSAMIASYGIHGH-------GRKAIDL 672



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 43  SQLISFFALSGCK-NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           S++++ FA+     N +  + I+F  I NP  F+WN ++RG++       +L LY+ M+ 
Sbjct: 511 SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMME 570

Query: 102 KGI------VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS 155
           KG+      V PN  +   VL +C  L + + G   H ++I+ G EFD+ +  A++  YS
Sbjct: 571 KGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 630

Query: 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA 215
             G ++ A  +F+ +  +DLV ++ +I  Y        A+ LF +M  + ++P   TF  
Sbjct: 631 KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 690

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
           + SAC+       GK +  ++ +    +   +     ++++  + G ++ A  +   M +
Sbjct: 691 VLSACSHSGLLEEGKMYFQLMTEEF-VIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV 749

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
               + W S++        ++ A ++ D +   D V
Sbjct: 750 EPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPV 785


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/716 (33%), Positives = 388/716 (54%), Gaps = 48/716 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +S L L  S    +    +H  IV  G + +    + LI+ +++ G  +    +R +F  
Sbjct: 150 TSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDS---ARSVFEG 206

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           I   +I +W  ++  Y  +   +++L L + M   G + PNN+TF   L +   L +F  
Sbjct: 207 ILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFM-PNNYTFDTALKASIGLGAFHF 265

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              +H  I+K   E D  +   L+  Y+  G +++A KVF      D+V ++ +I  + Q
Sbjct: 266 AKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 A+ +F +M++  + P+ FT  ++ + C       +G+Q H +V K    VG ++
Sbjct: 326 NGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVK----VGFDL 381

Query: 248 --LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
              +  A+I++YAKC                                 K++ A +LF ++
Sbjct: 382 DVYVSNALIDVYAKCE--------------------------------KMDTAVKLFAEL 409

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365
             +++VSW  +I GY  +G   +AL +F +     +   EVT  + L AC  L +++ G 
Sbjct: 410 SSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGV 469

Query: 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLA 425
           ++H   I+     R + ++ ++IDMYAKCG I  A +VF ++      V+ +N++ISG +
Sbjct: 470 QVHGLAIKTNNAKR-VAVSNSLIDMYAKCGDIKVAQTVFNEMET--IDVASWNALISGYS 526

Query: 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQM 484
            HGLG  ++ +F  M+    KP+G+TF+ VL  CS+ GL+++G+  FESM+ ++GI+P +
Sbjct: 527 THGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCL 586

Query: 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544
           EHY CMV L  R G+LD+A  LI+ +PY+ + +IWRA+L+A     N +    + +++L 
Sbjct: 587 EHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILK 646

Query: 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKK 604
           + P   A YVLLSNM A   +W     +RK M + G++K PG S+IEH G +H F     
Sbjct: 647 INPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSS 706

Query: 605 SHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN- 663
            HP  K I  ML+ + MK   AGYVP+   V+ D+D+EEK+  +  HSE+LALA+GL+  
Sbjct: 707 DHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRM 766

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             S+  I I KNLRIC DCH A K++S I +R++++RD  RFH F  G CSC D W
Sbjct: 767 PSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 180/418 (43%), Gaps = 42/418 (10%)

Query: 108 NNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVF 167
           ++  +  +L  C R +   S   IHC I+K G   DLF  N L++ Y   G+  +A  +F
Sbjct: 48  DSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 168 EGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
           +    R+ VSY TL  GYA  ++P   + L+ ++     + +   F +       L+   
Sbjct: 108 DEMPERNNVSYVTLTQGYA-CQDP---VGLYSRLHREGHELNPHVFTSFLKLFVSLDKAE 163

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           I    H+ + K LG   SN  +  A+IN Y+ CG ++ A  VF  + + K    W+ ++S
Sbjct: 164 ICWWLHSPIVK-LG-YDSNAFVGAALINAYSVCGSVDSARSVFEGI-LCKDIVVWAGIVS 220

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y                                  G F  +L+L  +M   G  P+  T
Sbjct: 221 CYVEN-------------------------------GCFEDSLQLLSRMGMDGFMPNNYT 249

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
               L+A +GLGA  F K +H Q ++   +  +  +   ++ +Y + G +  A  VF ++
Sbjct: 250 FDTALKASIGLGAFHFAKSVHGQILK-TCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
           PKN   V  ++ +I+   Q+G    ++ +F  M    + P+  T  ++L  C+ G     
Sbjct: 309 PKN--DVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGL 366

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G+Q    ++  G    +     ++D+ A+  ++D A  L   +    N V W  ++  
Sbjct: 367 GEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELS-SKNVVSWNTVIVG 423


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/716 (33%), Positives = 394/716 (55%), Gaps = 47/716 (6%)

Query: 11  LLALLESCK---SLKQALQIHGQIVHSGLNHHIS--SSQLISFFALSGCKNGLFRSRILF 65
           L +LL+SC     L++   +H ++V SG     +  ++ LI+ +  S C + L  +  LF
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMY--SHCAD-LASALRLF 79

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           + +   N   W TL+ G S++    +AL  + +M   G V+P  F       + A L + 
Sbjct: 80  AAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAG-VAPTRFALSSAARAAAALGAP 138

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G Q+HC  ++ G + +LF+ + L   YS  G ++ A +VF+    +D V++  +I+GY
Sbjct: 139 LPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 198

Query: 186 AQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           A+      A+  FR M+ +  +  D   F ++ SA   L D  + K  H  V K      
Sbjct: 199 AKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTK--AGFE 256

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
             + ++ A+I+MYAK   +  A RV            W                      
Sbjct: 257 LEVAVRNALIDMYAKSMDVESASRVLKI-----DPGGW---------------------- 289

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
               ++VS T+MI GY +     +AL ++ ++   G+ P+E T  ++++ C     L+ G
Sbjct: 290 ----NVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQG 345

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
            +LH Q I+  +  R+ F+ + ++DMY KCG I  ++ +F +I    +T   +N++I+  
Sbjct: 346 AQLHAQVIKTDLI-RDSFVGSTLVDMYGKCGLISLSMQLFNEI--EYRTDIAWNAVINVF 402

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
           AQHG G  +I  F  M   G++P+ + FV++L ACSH GLV+EG ++F SM   +GI+P+
Sbjct: 403 AQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPK 462

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            EHY C++D   R GRLDEAY  I  MP   N+  W +LL ACR+  + ++GE+A Q L+
Sbjct: 463 EEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLM 522

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            LEP +   +V LS + A   +WE+ + VRKLM DS I+K PG+S+++ N   H F +  
Sbjct: 523 KLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSED 582

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SHPQ K+I   L+++T ++K  GY+P+T  +  ++++  KE ++ YHSE++A+AF LI+
Sbjct: 583 WSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALIS 642

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
             + + I + KNLRIC DCH AFK + ++ RR+I+VRD  RFH F  G CSC D+W
Sbjct: 643 MPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 6/184 (3%)

Query: 343 PDEVTMV---AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           PD  T V   ++L++C   G L  G+ LH + + +     + FL   +I MY+ C  + +
Sbjct: 15  PDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLAS 74

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459
           AL +F  +P+  +    + +++SGL+Q+ +   ++A F  M   G+ P      +   A 
Sbjct: 75  ALRLFAAMPR--RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAA 132

Query: 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           +  G    G Q     +  G   ++     + D+ ++ G L EA  +   MP   ++V W
Sbjct: 133 AALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMP-QKDAVAW 191

Query: 520 RALL 523
            A++
Sbjct: 192 TAMI 195


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/608 (36%), Positives = 338/608 (55%), Gaps = 44/608 (7%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L S  RL + +   Q+H HII  GL     +   LI      G I  A ++F      D
Sbjct: 33  LLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 89

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
              +++L+   ++       +  +R+M  S      +TF ++  AC +L+  R+GK+ H+
Sbjct: 90  SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHS 149

Query: 235 VVYKNLGC-VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
            V   + C  GS+M ++ A+I +YAK   M +A++V                        
Sbjct: 150 HV---MVCGYGSDMYVQAALIALYAKASDMKVAKKV------------------------ 182

Query: 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353
                   FD M QR +++W ++ISGY Q G   +++ LF  M   G  PD  T+V++L 
Sbjct: 183 --------FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS 234

Query: 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT 413
           +C  LGALDFG  LH  Y +   F  N+ L T++I+MY +CG++  A  VF  + +  + 
Sbjct: 235 SCSQLGALDFGCWLHD-YADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE--RN 291

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473
           V  + ++ISG   HG G  ++ +F EM   G +P+ +TFV VL AC+H GL+++G++ F 
Sbjct: 292 VVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFS 351

Query: 474 SMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS-MPYDANSVIWRALLAACRLHRN 531
           SM   YG+ P +EH  CMVD+  R G L++AY  I+  +P +    +W ++L ACR+HRN
Sbjct: 352 SMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRN 411

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             +G    + +L +EP++  HYV+LSN+ A   R +    VR +M    ++K  G+S IE
Sbjct: 412 FDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIE 471

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
            N   + F    KSHPQT  I   L ++  +   +GYVP    ++ D++EEE++  + YH
Sbjct: 472 INRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYH 531

Query: 652 SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
           SEKLALAFGL+ +   ETIRI KNLRIC DCH A K +S I  REI+VRD  RFH FK G
Sbjct: 532 SEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDG 591

Query: 712 NCSCMDFW 719
           +CSC+D+W
Sbjct: 592 SCSCLDYW 599



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 201/398 (50%), Gaps = 38/398 (9%)

Query: 13  ALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPN 72
           ALL S   L+   Q+H  I+ SGL  H S S L    +L      +  +R LF  + NP+
Sbjct: 32  ALLRSGPRLRNLQQVHAHIIVSGL--HRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 89

Query: 73  IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132
            F++++L++  S+     + ++ Y  ML  G    +N+TF  V+ +CA LS+ + G +IH
Sbjct: 90  SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG-APQSNYTFTSVIKACADLSALRLGKEIH 148

Query: 133 CHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
            H++  G   D++++ ALI  Y+    +  A KVF+    R ++++N+LI+GY Q   P 
Sbjct: 149 SHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQ 208

Query: 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252
            ++ LF  M +S  QPD+ T V++ S+C++L     G   H   Y +      N++L T+
Sbjct: 209 ESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHD--YADGNGFDLNVVLGTS 266

Query: 253 VINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312
           +INMY +CG ++ A  VF +M   ++   W++MISGY                       
Sbjct: 267 LINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYG---------------------- 303

Query: 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372
               + GY +     QA+ELF +M + G  P+ +T VAVL AC   G +D G+R+     
Sbjct: 304 ----MHGYGR-----QAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 354

Query: 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-IPK 409
           E       +     ++DM+ + G ++ A     K IPK
Sbjct: 355 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPK 392


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 249/797 (31%), Positives = 406/797 (50%), Gaps = 89/797 (11%)

Query: 2   KRLVLEHSSLLALLESCKSLKQ---ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGL 58
           K +  +  +L  +L+ C +L +    +++H  +V  G   H+      +   L     G+
Sbjct: 125 KGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGF--HVDVHLSCALINLYEKYLGI 182

Query: 59  FRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118
             +  +F +      F+WNT++    RS+  ++AL L+  M S    + +  T   +L +
Sbjct: 183 DGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDG-TIVKLLQA 241

Query: 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178
           C +L +   G QIH ++I+FG   +  I N+++  YS    +  A   F+ +   +  S+
Sbjct: 242 CGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASW 301

Query: 179 NTLINGYAQVKEPCPALW-LFRKMQDSCIQPDAFTFVAMFS------------------- 218
           N++I+ YA V +     W L ++M+ S ++PD  T+ ++ S                   
Sbjct: 302 NSIISSYA-VNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQ 360

Query: 219 ----------------ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
                           A   L    +GK+ H  + ++   +  ++ + T++++ Y K   
Sbjct: 361 SAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSK--LEYDVYVCTSLVDKYIKNDC 418

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR-------------- 308
           ++ AE VF     +K+  AW+S+ISGYT +G  + A +L +QM +               
Sbjct: 419 LDKAEVVFHHTK-NKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVS 477

Query: 309 -------------------------DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
                                    ++VSWTAMISG  Q   +  AL+ F +M+   + P
Sbjct: 478 GYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKP 537

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           +  T+  +LRAC G   L  G+ +H   + +  F  +I++ TA+IDMY K G +  A  V
Sbjct: 538 NSTTICTLLRACAGSSLLKIGEEIHCFSMRHG-FLDDIYIATALIDMYGKGGKLKVAHEV 596

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463
           F  I +  KT+  +N ++ G A +G GE    +F EM   G++PD +TF  +L  C + G
Sbjct: 597 FRNIKE--KTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSG 654

Query: 464 LVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           LV +G ++F+SM  +Y I P +EHY CMVDLL + G LDEA   I ++P  A++ IW A+
Sbjct: 655 LVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAV 714

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           LAACRLH++ KI EIA + LL LEP + A+Y L+ N+ +   RW +  ++++ M   G++
Sbjct: 715 LAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVK 774

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEE 642
            P  WS+I+   T+H F    KSHP+  EI   L  +  ++K  GYV +   V  ++D+ 
Sbjct: 775 IPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDS 834

Query: 643 EKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDA 702
           EKE V+  H+EKLA+ +GL+ ++    IR+ KN RIC DCH   K +S    REI +RD 
Sbjct: 835 EKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDG 894

Query: 703 IRFHLFKKGNCSCMDFW 719
            RFH F  G CSC D W
Sbjct: 895 GRFHHFMNGECSCKDRW 911



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 232/473 (49%), Gaps = 15/473 (3%)

Query: 72  NIFIWNTLMRGY-SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
           N  +WN+ +  + S      E L ++  +  KG V  ++     VL  C  L     G +
Sbjct: 94  NYLLWNSFIEEFASFGGDSHEILAVFKELHDKG-VKFDSKALTVVLKICLALMELWLGME 152

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H  ++K G   D+ +  ALI+ Y  +  I+ A++VF+ +  ++   +NT++    + ++
Sbjct: 153 VHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEK 212

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LFR+MQ +  +    T V +  AC +L     GKQ H  V +  G V SN  + 
Sbjct: 213 WEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIR-FGRV-SNTSIC 270

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD---- 306
            ++++MY++   + +A   F +     ++A+W+S+IS Y     +  A  L  +M+    
Sbjct: 271 NSIVSMYSRNNRLELARVAFDSTE-DHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGV 329

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           + D+++W +++SG+   G +   L  F  ++S G  PD  ++ + L+A +GLG  + GK 
Sbjct: 330 KPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKE 389

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ 426
           +H  YI       ++++ T+++D Y K   +D A  VF+   KN K +  +NS+ISG   
Sbjct: 390 IH-GYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHT-KN-KNICAWNSLISGYTY 446

Query: 427 HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486
            GL + +  +  +M+  G+KPD VT+ +++   S  G  EE       + + G+ P +  
Sbjct: 447 KGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVS 506

Query: 487 YGCMVDLLARDGRLDEA---YGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
           +  M+    ++    +A   +  +Q      NS     LL AC      KIGE
Sbjct: 507 WTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGE 559



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 5/243 (2%)

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS-QALELFGKMESLGIH 342
           SM+  Y + G  E A ++F     R+ + W + I  ++  GG S + L +F ++   G+ 
Sbjct: 69  SMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVK 128

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
            D   +  VL+ C+ L  L  G  +H   ++   F  ++ L+ A+I++Y K   ID A  
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLVKR-GFHVDVHLSCALINLYEKYLGIDGANQ 187

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF + P  L+   L+N+I+    +    E ++ +FR M+    K    T V +L AC   
Sbjct: 188 VFDETP--LQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKL 245

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
             + EGKQ    ++ +G          +V + +R+ RL+ A     S   D NS  W ++
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTE-DHNSASWNSI 304

Query: 523 LAA 525
           +++
Sbjct: 305 ISS 307


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 348/606 (57%), Gaps = 48/606 (7%)

Query: 123 SSFKSGCQIHCHIIKFGLE--FDLFIRNALIHFYSIFGY-INNAHKVFEGSLAR---DLV 176
            S  +  QIH   ++ G+     L  ++ L H  ++    +  A  V    L     D  
Sbjct: 26  PSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPF 85

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
             NT++   A    P  AL L R+       PD  T+  +  AC  L   R G+  HA  
Sbjct: 86  PLNTVLRIAAGSPRPRVALELHRR---RLALPDTHTYPPLIQACARLLALREGECLHAEA 142

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            KN G V + + ++ +++++Y  CGL                                 E
Sbjct: 143 AKN-GFV-TLVFVQNSLVHLYGACGLF--------------------------------E 168

Query: 297 RARQLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
            A ++FD+M    R+LVSW +M++ ++  G  ++ L +F +M  +   PD  T+V+VL A
Sbjct: 169 SAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTA 228

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C   GAL  G+R+H  Y+E V    N  ++ A+ID+YAKCGS++ A  +F ++    +TV
Sbjct: 229 CAEFGALALGRRVHV-YVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLG-RTV 286

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             + S+I GLA +G G+ ++ +F  ME   L P  +T V VL ACSH GLV++G ++F+ 
Sbjct: 287 VSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDR 346

Query: 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M  +YGI P++EH GCMVDLL R GR++EAY  I +MP + N+V+WR LL +C +H+  +
Sbjct: 347 MKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLE 406

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHN 593
           +G++A ++L++L+P H   YVLLSN+ A    W +   +RK M    ++K PG S +E  
Sbjct: 407 LGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELR 466

Query: 594 GTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSE 653
            +++ F+   +SHP++++I  ML ++  +L+  GY+P T  V+ D++EEEKET ++YHSE
Sbjct: 467 NSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSE 526

Query: 654 KLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNC 713
           +LA+AF L+ S     IRI KNLR+CGDCH+AF L+S++Y REI+VRD  RFH F+ G C
Sbjct: 527 RLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGAC 586

Query: 714 SCMDFW 719
           SC D+W
Sbjct: 587 SCKDYW 592



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 208/436 (47%), Gaps = 53/436 (12%)

Query: 3   RLVLEHS-SLLALLESCKSLKQALQIHGQIVHSGL--NHHISSSQLISFFALSGCKNGLF 59
           R  L H  +LL L  +  SL  A QIH + + +G+  +H + +  L+  F L+  +    
Sbjct: 9   RPALRHCVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLL--FHLAALRAPPL 66

Query: 60  R------SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           R      SR+L     +P  F  NT++R  + S  P+ AL L+   L+     P+  T+P
Sbjct: 67  RYAVAVLSRLLPHGPLDP--FPLNTVLRIAAGSPRPRVALELHRRRLAL----PDTHTYP 120

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--GSL 171
            ++ +CARL + + G  +H    K G    +F++N+L+H Y   G   +AHKVF+     
Sbjct: 121 PLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVR 180

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            R+LVS+N+++N +A    P   L +F +M      PD FT V++ +AC E     +G++
Sbjct: 181 GRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRR 240

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            H  V K +G V  N  +  A+I++YAKCG +N A R+F  MG+ ++  +W+S+I G   
Sbjct: 241 VHVYVEK-VGLV-ENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAA 298

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G  + A +LF  M++  LV                               P E+TMV V
Sbjct: 299 NGFGKEALELFSLMEREKLV-------------------------------PTEITMVGV 327

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC   G +D G R   +  E+      I     ++D+  + G ++ A      +P   
Sbjct: 328 LYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEP 387

Query: 412 KTVSLFNSIISGLAQH 427
             V ++ +++   A H
Sbjct: 388 NAV-VWRTLLGSCAMH 402



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 72  NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131
           N+  WN+++  ++ +  P E L ++  ML     +P+ FT   VL +CA   +   G ++
Sbjct: 183 NLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDF-APDGFTIVSVLTACAEFGALALGRRV 241

Query: 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEG-SLARDLVSYNTLINGYAQVKE 190
           H ++ K GL  +  + NALI  Y+  G +N+A ++FE   L R +VS+ +LI G A    
Sbjct: 242 HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 301

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF  M+   + P   T V +  AC+       G ++   + ++ G +   +   
Sbjct: 302 GKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYG-ISPRIEHL 360

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD 309
             ++++  + G +  A     TM +  +   W +++       K+E  +  ++++ + D
Sbjct: 361 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELD 419


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 360/650 (55%), Gaps = 83/650 (12%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI--FGYINNAHKVFEGSLA 172
           +++ C+     K   QIH  +++ GL FD F  + LI   ++  F  ++ A +VF+    
Sbjct: 41  LIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLF-RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            +L ++NTLI  YA    P  +L +F R +  S   PD FTF  +  A +EL +   GK 
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG--- 288
           FH +V K L  +GS++ +  ++I+ YAKCG + +  RVF  +   +   +W+SMI+    
Sbjct: 158 FHGMVIKVL--LGSDVFILNSLIHFYAKCGELGLGYRVFVNIP-RRDVVSWNSMITAFVQ 214

Query: 289 -----------------------------YTREGKIERARQLFDQMDQRDLVSWTAMISG 319
                                        YT+ G +E A++LFD+M ++D+VSWT M+ G
Sbjct: 215 GGCPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVG 274

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI---ENVV 376
           Y+++G +  A  +F  M +  I      + A  +      AL+    L        + V 
Sbjct: 275 YAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVT 334

Query: 377 FGR----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432
             +    N  LTT++IDMY KCG +  AL VF+ + +  K V +++++I+GLA HG G+ 
Sbjct: 335 LKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER--KDVFVWSAMIAGLAMHGHGKD 392

Query: 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMV 491
           +IA+F +M+   +KP+ VTF  +LCACSH GLVEEG+ FF  M L YG            
Sbjct: 393 AIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG------------ 440

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP-DHG 550
                             MP    + +W ALL AC +H N  + E A  +L++LEP +HG
Sbjct: 441 -----------------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHG 483

Query: 551 AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTK 610
           A YVLLSN+ A+  +W+    +RKLM D G++K PG S IE +G +H FL    SHP  K
Sbjct: 484 A-YVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAK 542

Query: 611 EIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE-KETVVSYHSEKLALAFGLINSRSKET 669
           +I   L ++  +L++ GYVPN   ++  V+EE+ KE  +  HSEKLA+AFGLI++   + 
Sbjct: 543 KIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQP 602

Query: 670 IRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IRI KNLR+CGDCH   KL+S++Y REI++RD  RFH F++G+CSCMD+W
Sbjct: 603 IRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/613 (36%), Positives = 349/613 (56%), Gaps = 56/613 (9%)

Query: 119 CARLSSFKSGCQIHCHI--------IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           C R  +   G  IH H+           G    +F+ N+L+  Y+ FG +++A ++F+  
Sbjct: 82  CVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRM 141

Query: 171 LARDLVSYNTLINGYAQV---KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR 227
             R++V++ T++   A     KE   AL     M    + P+A+TF ++  AC     P 
Sbjct: 142 PERNVVTWTTVVAALANADGRKEE--ALRFLVAMWRDGVAPNAYTFSSVLGAC---GTPG 196

Query: 228 IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           +    HA   K                                  +G+       SS+I 
Sbjct: 197 VLAALHASTVK----------------------------------VGLDSDVFVRSSLID 222

Query: 288 GYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
            Y + G ++  R++FD+M  RDLV W ++I+G++Q G    A+ELF +M+  G   ++ T
Sbjct: 223 AYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGT 282

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407
           + +VLRAC G+  L+ G+++H   ++   + R++ L  A++DMY KCGS++ A ++F+++
Sbjct: 283 LTSVLRACTGMVMLEAGRQVHAHVLK---YERDLILHNALLDMYCKCGSLEDAEALFHRM 339

Query: 408 PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
           P+  + V  ++++ISGLAQ+G    ++ VF  M+  G+ P+ +T V VL ACSH GLVE+
Sbjct: 340 PQ--RDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVED 397

Query: 468 GKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G  +F SM   +GI+P+ EH+ CMVDLL R G+LDEA   I+ M  + ++VIWR LL AC
Sbjct: 398 GWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGAC 457

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H++  +   A +++L LEPD     VLLSN  A+  +W +A +  K M D G++K PG
Sbjct: 458 RMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPG 517

Query: 587 WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
            S+IE    +H F+A   SHP +  I   L  +  ++ + GYVP T  V+ D+  E+KE 
Sbjct: 518 RSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKED 577

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
           ++ YHSEK+A+AFG +++   + IRI KNLRICGDCH   KL+S+   R I++RD +RFH
Sbjct: 578 LLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFH 637

Query: 707 LFKKGNCSCMDFW 719
            F+ G CSC D+W
Sbjct: 638 HFQDGACSCGDYW 650



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 223/466 (47%), Gaps = 55/466 (11%)

Query: 25  LQIHGQIVH----SGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80
           ++ HGQ+ H    +G    +S+S L+S +A  G  +   R   LF ++   N+  W T++
Sbjct: 98  VEAHGQLSHYSGGAGGGIFVSNS-LVSMYAKFGLLDDALR---LFDRMPERNVVTWTTVV 153

Query: 81  RGYSRSDS-PQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139
              + +D   +EAL    +M   G V+PN +TF  VL +C       +   +H   +K G
Sbjct: 154 AALANADGRKEEALRFLVAMWRDG-VAPNAYTFSSVLGACGTPGVLAA---LHASTVKVG 209

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFR 199
           L+ D+F+R++LI  Y   G ++   +VF+  + RDLV +N++I G+AQ  +   A+ LF 
Sbjct: 210 LDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFM 269

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
           +M+D+    +  T  ++  ACT +     G+Q HA V K       +++L  A+++MY K
Sbjct: 270 RMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK----YERDLILHNALLDMYCK 325

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CG +  AE +F  M   +   +WS+MISG  + GK                         
Sbjct: 326 CGSLEDAEALFHRMP-QRDVISWSTMISGLAQNGK------------------------- 359

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
                  ++AL +F  M+S G+ P+ +TMV VL AC   G ++ G    +   +      
Sbjct: 360 ------SAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQP 413

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFRE 439
                  ++D+  + G +D A+     +      V ++ +++     H  G  ++A +  
Sbjct: 414 EREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAV-IWRTLLGACRMHKSG--NLAAYAA 470

Query: 440 MELMGLKPDGVTFVTVLCACSHGGLVE--EGKQFFESMLNYGIKPQ 483
            E++ L+PD      VL + ++  L +  + ++ +++M + G+K +
Sbjct: 471 REILKLEPDD-QGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKE 515



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVF-------GRNIFLTTAVIDMYAKCGS 396
           D V++  +++ CV  G    G+ +H+    +          G  IF++ +++ MYAK G 
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQ-HGLGETSIAVFREMELMGLKPDGVTFVTV 455
           +D AL +F ++P+  + V  + ++++ LA   G  E ++     M   G+ P+  TF +V
Sbjct: 131 LDDALRLFDRMPE--RNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188

Query: 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
           L AC   G++        S +  G+   +     ++D   + G LD    +   M    +
Sbjct: 189 LGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEM-VTRD 244

Query: 516 SVIWRALLAA 525
            V+W +++A 
Sbjct: 245 LVVWNSIIAG 254


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 333/565 (58%), Gaps = 45/565 (7%)

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSA 219
           +A + F+     + V    + +GY +      +L LFR M   DS    D    +  FSA
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
              + D  +    HA++ K                                  +G  ++ 
Sbjct: 62  SARVPDRGVTASLHALIAK----------------------------------IGFERNA 87

Query: 280 AAWSSMISGYTREGK--IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337
              ++M+  Y + G   +E AR++FD M +RD+VSW +MI+ Y+Q G  ++A+ L+ KM 
Sbjct: 88  GVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKML 146

Query: 338 SLG--IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           ++G  I  + V + AVL AC   GA+  GK +H Q +  +    N+++ T+++DMY+KCG
Sbjct: 147 NVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVR-MGLEENVYVGTSIVDMYSKCG 205

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            ++ A   F KI +  K +  ++++I+G   HG G+ ++ +F EM+  GL+P+ +TF++V
Sbjct: 206 RVEMASRAFRKIKE--KNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISV 263

Query: 456 LCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L ACSH GL++EG+ ++ +M   +GI+  +EHYGCMVDLL R G LDEAY LI+ M    
Sbjct: 264 LAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKP 323

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           ++ IW ALL+ACR+H+N ++ E++ ++L +L+  +  +YVLLSN+ AE   W++  ++R 
Sbjct: 324 DAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRL 383

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
           L+    I+KPPG+S  E  G ++ F    KSHPQ  EI   L+ +  +++ AGYVPNT  
Sbjct: 384 LVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGS 443

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
           V+ D+DEEEKE+ +  HSEKLA+AF L+NS  +  I I KNLR+C DCH A K +++I  
Sbjct: 444 VLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITE 503

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REI++RD  RFH FK G CSC D+W
Sbjct: 504 REIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 182/389 (46%), Gaps = 44/389 (11%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV-LNSC 119
           +R  F +I +PN  I   +  GY R++    +L L+ +M++    S  +     V  ++ 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY--INNAHKVFEGSLARDLVS 177
           AR+        +H  I K G E +  + N ++  Y+  G   +  A KVF+ ++ RD+VS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVS 121

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQD--SCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           +N++I  YAQ      A+ L+ KM +    I+ +A    A+  AC      + GK  H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
           V + +G +  N+ + T++++MY+KCG + MA R F  +   K+  +WS+MI+GY   G+ 
Sbjct: 182 VVR-MG-LEENVYVGTSIVDMYSKCGRVEMASRAFRKI-KEKNILSWSAMITGYGMHGRG 238

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           +                               +ALE+F +M+  G+ P+ +T ++VL AC
Sbjct: 239 Q-------------------------------EALEIFTEMKRSGLRPNYITFISVLAAC 267

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              G LD G+  +    +       +     ++D+  + G +D A S+  ++ K     +
Sbjct: 268 SHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM-KVKPDAA 326

Query: 416 LFNSIISGLAQHG---LGETSIAVFREME 441
           ++ +++S    H    L E S+    E++
Sbjct: 327 IWGALLSACRIHKNVELAEMSVKRLFELD 355



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 157/321 (48%), Gaps = 12/321 (3%)

Query: 4   LVLEHSSLLALLESCKSLKQAL--QIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFR 60
           +V E ++L+A   S +   + +   +H  I   G   +    + ++  +A  G ++ L  
Sbjct: 49  VVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRD-LEV 107

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSC 119
           +R +F  ++  ++  WN+++  Y+++    EA+ LY+ ML+  G +  N      VL +C
Sbjct: 108 ARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLAC 166

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A   + ++G  IH  +++ GLE ++++  +++  YS  G +  A + F     ++++S++
Sbjct: 167 AHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWS 226

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I GY        AL +F +M+ S ++P+  TF+++ +AC+       G+ ++  + + 
Sbjct: 227 AMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQE 286

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G + + +     ++++  + G ++ A  +   M +    A W +++S       +E A 
Sbjct: 287 FG-IEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELA- 344

Query: 300 QLFDQMDQRDLVSWTAMISGY 320
               +M  + L    A  SGY
Sbjct: 345 ----EMSVKRLFELDASNSGY 361


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/710 (32%), Positives = 382/710 (53%), Gaps = 49/710 (6%)

Query: 13  ALLESCK---SLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQI 68
           ++L SC     L +  ++H  +V    +  +   + LI+ +   G    +  +R+LF ++
Sbjct: 140 SVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCG---DVVSARMLFDKM 196

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +   WN ++ GY  +D   E L L+  M    I  P+  T   V+++C  L   + G
Sbjct: 197 PTRDRISWNAMISGYFENDECLEGLELFFRMRELSI-DPDLMTMTSVISACELLGDERLG 255

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H ++++   + ++ + N+LI  Y   G+   A  VF G   RD+VS+ T+I+G    
Sbjct: 256 TQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDN 315

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  AL  ++ M+ +   PD  T  ++ SAC  L    +G + H +  +    +   ++
Sbjct: 316 LLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHIL--YVV 373

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  ++I+MY+KC                                 +IE+A ++F Q+  +
Sbjct: 374 VANSLIDMYSKCK--------------------------------RIEKALEIFHQIPDK 401

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D++SWT++I+G        +AL  F KM  L   P+ VT+++ L AC  +GAL  GK +H
Sbjct: 402 DVISWTSVINGLRINNRCFEALIFFRKM-ILKSKPNSVTLISALSACARVGALMCGKEIH 460

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              ++    G + FL  A++D+Y +CG + TAL+ F     N K V  +N +++G AQ G
Sbjct: 461 AHALK-AGMGFDGFLPNAILDLYVRCGRMRTALNQF---NLNEKDVGAWNILLTGYAQKG 516

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHY 487
            G   + +F+ M    + PD VTF+++LCACS  G+V EG ++F+ M +NY I P ++HY
Sbjct: 517 KGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHY 576

Query: 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547
            C+VDLL R G+L+EA+  I+ MP   +  IW ALL ACR+HR+  +GE+A Q +   + 
Sbjct: 577 ACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDA 636

Query: 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHP 607
           +   +Y+LL N+ A++ +W+E  +VR+ M + G+   PG S++E  G +H FL+    HP
Sbjct: 637 ESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHP 696

Query: 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSK 667
           Q +EI ++L+    K+K++G+       + D  +  K  +   HSE+ A+A+ LINS   
Sbjct: 697 QMQEINVVLEGFYEKMKTSGFNGQECSSM-DGIQTSKADIFCGHSERQAIAYSLINSAPG 755

Query: 668 ETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
             I +TKNL +C  CH   K +S+I RREI VRD  +FH FK G CSC D
Sbjct: 756 MPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 232/464 (50%), Gaps = 45/464 (9%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F ++   ++F WN L+ GY+++    EAL LY  +L  GI  P+ +TFP VL SCA   
Sbjct: 91  VFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGI-RPDVYTFPSVLRSCAGAM 149

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G ++H H+++F  + D+ + NALI  Y   G + +A  +F+    RD +S+N +I+
Sbjct: 150 DLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMIS 209

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GY +  E    L LF +M++  I PD  T  ++ SAC  L D R+G Q H+ V +     
Sbjct: 210 GYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRT--AY 267

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             N+ +  ++I MY   G    AE VFS M   +   +W+++ISG               
Sbjct: 268 DGNISVYNSLIQMYLSVGHWKEAESVFSGME-CRDVVSWTTIISGCV------------- 313

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
                +L+                +ALE +  ME  G  PDEVT+ +VL AC  LG LD 
Sbjct: 314 ----DNLLP--------------DKALETYKTMEITGTMPDEVTIASVLSACASLGQLDM 355

Query: 364 GKRLHQ--QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           G +LH+  +   ++++   + +  ++IDMY+KC  I+ AL +F++IP   K V  + S+I
Sbjct: 356 GMKLHELAERTGHILY---VVVANSLIDMYSKCKRIEKALEIFHQIPD--KDVISWTSVI 410

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481
           +GL  +     ++  FR+M ++  KP+ VT ++ L AC+  G +  GK+     L  G+ 
Sbjct: 411 NGLRINNRCFEALIFFRKM-ILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMG 469

Query: 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
                   ++DL  R GR+  A         D  +  W  LL  
Sbjct: 470 FDGFLPNAILDLYVRCGRMRTALNQFNLNEKDVGA--WNILLTG 511



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 4/258 (1%)

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           V S++    S    ++++S + R G +  A  +F +M +RDL SW  ++ GY++ G F +
Sbjct: 59  VLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDE 118

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           AL L+ ++   GI PD  T  +VLR+C G   L  G+ +H   +    F  ++ +  A+I
Sbjct: 119 ALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR-FDFDMDVDVVNALI 177

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
            MY KCG + +A  +F K+P   +    +N++ISG  ++      + +F  M  + + PD
Sbjct: 178 TMYVKCGDVVSARMLFDKMPTRDRIS--WNAMISGYFENDECLEGLELFFRMRELSIDPD 235

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508
            +T  +V+ AC   G    G Q    ++       +  Y  ++ +    G   EA  +  
Sbjct: 236 LMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFS 295

Query: 509 SMPYDANSVIWRALLAAC 526
            M    + V W  +++ C
Sbjct: 296 GMEC-RDVVSWTTIISGC 312



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 97/202 (48%), Gaps = 3/202 (1%)

Query: 324 GGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383
           G   QAL+    M+ + I  +E   VA++R C        G+ + +  + ++V   ++ L
Sbjct: 12  GNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRL 71

Query: 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443
             A++ M+ + G +  A +VF ++ +  + +  +N ++ G  + G  + ++ ++  +   
Sbjct: 72  GNALLSMFVRFGDVGNAWNVFGRMGE--RDLFSWNVLVGGYTKAGFFDEALCLYHRILWA 129

Query: 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503
           G++PD  TF +VL +C+    +  G++    ++ +     ++    ++ +  + G +  A
Sbjct: 130 GIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189

Query: 504 YGLIQSMPYDANSVIWRALLAA 525
             L   MP   + + W A+++ 
Sbjct: 190 RMLFDKMP-TRDRISWNAMISG 210


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/731 (32%), Positives = 398/731 (54%), Gaps = 70/731 (9%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRILFS 66
           + LL  C    SL  A  +HG +  +G +    +++S + ++   S  ++    +R LF 
Sbjct: 82  VPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARD----ARRLFD 137

Query: 67  QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126
            +   N+  W  L+ GY+ +  P   L ++  ML  G   P+++T    LN+C       
Sbjct: 138 GMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRY-PSHYTLGATLNACLASCDVD 196

Query: 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
            G Q+H + IK+G E    + N+L   Y+  G +++A + F     ++++++ T+I+  A
Sbjct: 197 LGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACA 256

Query: 187 QVKEPCPALW--LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
           +  E C  L   LF  M    + P+ FT  ++ S C    D  +GKQ  A  +K +GC  
Sbjct: 257 E-DEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK-IGC-E 313

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           +N+ +K + + +Y                                 R+G+ + A +LF+Q
Sbjct: 314 TNLPVKNSTMYLY--------------------------------LRKGETDEAMRLFEQ 341

Query: 305 MDQRDLVSWTAMISGYSQV------------GGFSQALELFGKMESLGIHPDEVTMVAVL 352
           M+   +++W AMISGY+Q+             GF QAL +F  ++   + PD  T  ++L
Sbjct: 342 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGF-QALTIFRDLKRSVMKPDLFTFSSIL 400

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
             C  + AL+ G+++H Q I++  F  ++ + +A+++MY KCG I  A   F ++P   +
Sbjct: 401 SVCSAMMALEQGEQIHAQTIKSG-FLSDVVVNSALVNMYNKCGCIQDANKAFLEMPT--R 457

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
           T   + S+ISG +QHG  + +I +F EM L G++P+ +TFV++L ACS+ GLVEE + +F
Sbjct: 458 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYF 517

Query: 473 ESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRN 531
           + M   Y I+P ++HYGCM+D+  R GR+++A+  I+   ++ N  IW +L+A CR H N
Sbjct: 518 DMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 577

Query: 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM--DDSGIQKPPGWSY 589
            ++   A  KLL+L+P     Y+LL NM   T RW++  +VRKLM  +D GI +   W  
Sbjct: 578 MELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWIT 637

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           I+    ++ F A+ ++HPQ  E+  +L+++  K K+ GY P     + D +++EK    S
Sbjct: 638 IKDK--VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGS 695

Query: 650 --YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
             +HSE+LA+A GL+ +    T+R+TKN+ +C DCH + KL S +  REI+VRD+ R H 
Sbjct: 696 LKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHK 755

Query: 708 FKKGNCSCMDF 718
           FK G CSC DF
Sbjct: 756 FKDGRCSCGDF 766


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/765 (31%), Positives = 396/765 (51%), Gaps = 114/765 (14%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHS--GLNHHISSSQLISFFALSGCKNGLFRSRILF 65
           +SS+L L    KS     ++H  I  +  G++  +   +L+SF+A  G    L   R +F
Sbjct: 102 YSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGL-KLVSFYATCG---DLKEGRRVF 157

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             ++  N+++WN                                    F+++  A++  F
Sbjct: 158 DTMEKKNVYLWN------------------------------------FMVSEYAKIGDF 181

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           K    +   +++ G+E                    +A ++F+    RD++S+N++I+GY
Sbjct: 182 KESICLFKIMVEKGIEGK---------------RPESAFELFDKLCDRDVISWNSMISGY 226

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
                    L ++++M    I  D  T +++   C       +GK  H++  K+      
Sbjct: 227 VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS--SFER 284

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            +     +++MY+KCG ++ A RVF  MG  ++  +W+SMI+GYTR+G+ + A +L  QM
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIKLLQQM 343

Query: 306 DQR----DLVSWT-----------------------------------AMISGYSQVGGF 326
           ++     D+V+ T                                   A++  Y++ G  
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSM 403

Query: 327 SQALELFGKMESLGI----------HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
             A  +F  M    I           PD  TM  VL AC  L AL+ GK +H  YI    
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHG-YILRNG 462

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           +  +  +  A++D+Y KCG +  A  +F  IP   K +  +  +I+G   HG G  +IA 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPS--KDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLA 495
           F EM   G++PD V+F+++L ACSH GL+E+G +FF  M N + I+P++EHY CMVDLL+
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555
           R G L +AY  I+++P   ++ IW ALL  CR + + ++ E   +++ +LEP++  +YVL
Sbjct: 581 RTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVL 640

Query: 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLA-SKKSHPQTKEIEL 614
           L+N+ AE  +WEE +++R+ +   G++K PG S+IE  G ++ F++ +  SHP +K IE 
Sbjct: 641 LANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIES 700

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
           +LK M  K+K  G+ P T   + + DE +KE  +  HSEKLA+AFGL+    ++TIR+TK
Sbjct: 701 LLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTK 760

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLR+CGDCH   K +S+  RREI++RD  RFH FK G CSC  FW
Sbjct: 761 NLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/724 (34%), Positives = 392/724 (54%), Gaps = 52/724 (7%)

Query: 4    LVLEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS--SQLISFFALSGCKNGLFRS 61
            ++L   S  ++LE  +  ++  ++H  ++ +GLN +  +  + L++ +A SG    +  +
Sbjct: 860  VLLSAFSEFSVLEEGR--RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSG---AIADA 914

Query: 62   RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
              +F  +   +   WN+L+ G  +++  ++A   +  M   G + P+NFT    L+SCA 
Sbjct: 915  CSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSM-PSNFTLISTLSSCAS 973

Query: 122  LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
            L     G QIHC  +K GL+ D+ + NAL+  Y+  G      KVF      D VS+N++
Sbjct: 974  LGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSV 1033

Query: 182  INGYAQVKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
            I   +  +     A+  F +M          TF+ + SA + L+   +  Q HA+V K  
Sbjct: 1034 IGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKY- 1092

Query: 241  GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             C+  +  +  A+++ Y KC                                G++    +
Sbjct: 1093 -CLSDDTAIGNALLSCYGKC--------------------------------GEMNECEK 1119

Query: 301  LFDQMDQ-RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
            +F +M + RD VSW +MISGY       +A++L   M   G   D  T   VL AC  + 
Sbjct: 1120 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVA 1179

Query: 360  ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
             L+ G  +H   I       ++ + +A++DMY+KCG ID A   F  +P  L+ V  +NS
Sbjct: 1180 TLERGMEVHACGIR-ACMESDVVVGSALVDMYSKCGRIDYASRFFELMP--LRNVYSWNS 1236

Query: 420  IISGLAQHGLGETSIAVFREMELMGLKPDGVT-FVTVLCACSHGGLVEEGKQFFESMLN- 477
            +ISG A+HG GE ++ +F  M L G  PD V   + VL ACSH G VEEG + F+SM   
Sbjct: 1237 MISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEV 1296

Query: 478  YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC-RLH-RNAKIG 535
            Y + P++EH+ CMVDLL R G+LDE    I SMP   N +IWR +L AC R + RN ++G
Sbjct: 1297 YRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELG 1356

Query: 536  EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
              A + LL+LEP +  +YVLL+NM A   +WE+  + R  M ++ ++K  G S++     
Sbjct: 1357 RRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDG 1416

Query: 596  LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
            +H F+A  K HP+   I   L+++  K++ AGY+P T   +FD++ E KE ++SYHSEK+
Sbjct: 1417 VHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKI 1476

Query: 656  ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
            A+AF ++  +S   IRI KNLR+CGDCH AF  +S+I  R+I++RD+ RFH F+ G CSC
Sbjct: 1477 AVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSC 1535

Query: 716  MDFW 719
             D+W
Sbjct: 1536 GDYW 1539



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 240/523 (45%), Gaps = 57/523 (10%)

Query: 17   SCKSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
            SC S ++A ++H Q +  G + +   S+ LI+ +   G    L  ++ LF ++ N N+  
Sbjct: 557  SCCS-EEARELHLQSIKYGFVGNLFLSNTLINIYVRIG---DLGSAQKLFDEMSNRNLVT 612

Query: 76   WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR--LSSFKSGCQIHC 133
            W  L+ GY+++  P EA   +  M+  G + PN++ F   L +C     S  K G QIH 
Sbjct: 613  WACLISGYTQNGKPDEACARFRDMVRAGFI-PNHYAFGSALRACQESGPSGCKLGVQIHG 671

Query: 134  HIIKFGLEFDLFIRNALIHFY-SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192
             I K     D+ + N LI  Y S     N+A  VF+    R+ +S+N++I+ Y++  +  
Sbjct: 672  LISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXV 731

Query: 193  PALWLFRKMQDSCI----QPDAFTFVAMFS-ACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             A  LF  MQ   +    +P+ +TF ++ + AC+ ++                       
Sbjct: 732  SAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVD----------------------- 768

Query: 248  LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
                     +  C L  M  RV  + G  +     S+++SG+ R G  + A+ +F+QM  
Sbjct: 769  ---------FGLCVLEQMLARVEKS-GFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGV 818

Query: 308  RDLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKR 366
            R++VS   ++ G  +      A ++F +M+ L GI+ D  + V +L A      L+ G+R
Sbjct: 819  RNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--SYVVLLSAFSEFSVLEEGRR 876

Query: 367  ----LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIIS 422
                +H   I   +    + +   +++MYAK G+I  A SVF  + +  K    +NS+IS
Sbjct: 877  KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVE--KDSVSWNSLIS 934

Query: 423  GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482
            GL Q+   E +   F  M   G  P   T ++ L +C+  G +  G+Q     L  G+  
Sbjct: 935  GLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDT 994

Query: 483  QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
             +     ++ L A  G   E   +   MP + + V W +++ A
Sbjct: 995  DVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 1036



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 239/531 (45%), Gaps = 55/531 (10%)

Query: 9    SSLLALLESCKS-LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFS 66
            S+L A  ES  S  K  +QIHG I  +     +   + LIS +    C +    +R +F 
Sbjct: 650  SALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG--SCLDSANDARSVFD 707

Query: 67   QIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI---VSPNNFTFPFVLNSCARLS 123
            +I   N   WN+++  YSR      A  L++SM  +G+     PN +TF  ++   A  S
Sbjct: 708  RIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT--AACS 765

Query: 124  SFKSGC----QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
            S   G     Q+   + K G   DL++ +AL+  ++ FG  ++A  +FE    R++VS N
Sbjct: 766  SVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 825

Query: 180  TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN----DPRIGKQFHAV 235
             L+ G  + K+   A  +F +M+D  +  ++ ++V + SA +E +      R G++ HA 
Sbjct: 826  GLMVGLVKQKQGEAAAKVFHEMKD-LVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAH 884

Query: 236  VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            V +  G   + + +   ++NMYAK                                 G I
Sbjct: 885  VIRT-GLNDNKVAIGNGLVNMYAK--------------------------------SGAI 911

Query: 296  ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
              A  +F+ M ++D VSW ++ISG  Q      A E F +M   G  P   T+++ L +C
Sbjct: 912  ADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSC 971

Query: 356  VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
              LG +  G+++H   ++ +    ++ ++ A++ +YA+ G     L VF  +P+    VS
Sbjct: 972  ASLGWIMLGEQIHCDGLK-LGLDTDVSVSNALLALYAETGCFTECLKVFSLMPE-YDQVS 1029

Query: 416  LFNSIISGLAQHGLG-ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             +NS+I  L+        ++  F EM   G     VTF+ +L A S   L E   Q    
Sbjct: 1030 -WNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHAL 1088

Query: 475  MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
            +L Y +         ++    + G ++E   +   M    + V W ++++ 
Sbjct: 1089 VLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 1139


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/533 (39%), Positives = 322/533 (60%), Gaps = 45/533 (8%)

Query: 194 ALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
           +L LFR M   DS    D    +  FSA   + D  +    HA++ K             
Sbjct: 180 SLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAK------------- 226

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK--IERARQLFDQMDQRD 309
                                +G  ++    ++M+  Y + G   +E AR++FD M +RD
Sbjct: 227 ---------------------IGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERD 264

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLG--IHPDEVTMVAVLRACVGLGALDFGKRL 367
           +VSW +MI+ Y+Q G  ++A+ L+ KM ++G  I  + V + AVL AC   GA+  GKR+
Sbjct: 265 VVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRI 324

Query: 368 HQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           H Q +  +    N+++ T+++DMY+KCG ++ A   F KI +  K +  ++++I+G   H
Sbjct: 325 HNQVVR-MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKE--KNILSWSAMITGYGMH 381

Query: 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEH 486
           G G+ ++ +F EM+  GL+P+ +TF++VL ACSH GL++EG+ ++ +M   +GI+  +EH
Sbjct: 382 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEH 441

Query: 487 YGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546
           YGCMVDLL R G LDEAY LI+ M    ++ IW ALL+ACR+H+N ++ E++ ++L +L+
Sbjct: 442 YGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 501

Query: 547 PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSH 606
             +  +YVLLSN+ AE   W++  ++R L+    I+KPPG+S  E  G ++ F    KSH
Sbjct: 502 ASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSH 561

Query: 607 PQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRS 666
           PQ  EI   L+ +  +++ AGYVPNT  V+ D+DEEEKE+ +  HSEKLA+AF L+NS  
Sbjct: 562 PQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 621

Query: 667 KETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +  I I KNLR+C DCH A K +++I  REI++RD  RFH FK G CSC D+W
Sbjct: 622 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 158/321 (49%), Gaps = 12/321 (3%)

Query: 4   LVLEHSSLLALLESCKSLKQAL--QIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFR 60
           +V E ++L+A   S +   + +   +H  I   G   +    + ++  +A  G ++ L  
Sbjct: 195 VVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRD-LEV 253

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS-KGIVSPNNFTFPFVLNSC 119
           +R +F  ++  ++  WN+++  Y+++    EA+ LY+ ML+  G +  N      VL +C
Sbjct: 254 ARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLAC 312

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYN 179
           A   + ++G +IH  +++ GLE ++++  +++  YS  G +  A + F     ++++S++
Sbjct: 313 AHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWS 372

Query: 180 TLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
            +I GY        AL +F +M+ S ++P+  TF+++ +AC+       G+ ++  + + 
Sbjct: 373 AMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQE 432

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G + + +     ++++  + G ++ A  +   M +    A W +++S       +E A 
Sbjct: 433 FG-IEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELA- 490

Query: 300 QLFDQMDQRDLVSWTAMISGY 320
               +M  + L    A  SGY
Sbjct: 491 ----EMSVKRLFELDASNSGY 507


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/731 (33%), Positives = 381/731 (52%), Gaps = 52/731 (7%)

Query: 1   MKRLVLEHSSLLALLESC---KSLKQALQIHGQIVHSG-LNHHISSSQLISFFALSGCKN 56
           ++ L+   +S +A+L SC    SL  A  IH ++   G L   + ++ L++ +   G  +
Sbjct: 230 LEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVD 289

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
               S  +F  +   N   WN ++  +++      A  +Y  M  +G   PN  TF   L
Sbjct: 290 ---ESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGF-RPNKITFVTAL 345

Query: 117 NSCARLSSFKSG--CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
            +    SS   G    +H  I   GLE D+ +  AL+  Y   G I+ A   F+   A++
Sbjct: 346 KAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKN 405

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
           +VS+N ++  Y        A+ LF  M+   + P+  +++A+   C ++++ R     HA
Sbjct: 406 IVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEAR---SIHA 462

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            V  N G       +   V+ M+A                                R G 
Sbjct: 463 EVVGN-GLFAQESSIANGVVRMFA--------------------------------RSGS 489

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           +E A   FD    +D VSW   ++  S       A+  F  M+  G  PD+ T+V+V+  
Sbjct: 490 LEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDV 549

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS-IDTALSVFYKIPKNLKT 413
           C  LG L+ G+ + QQ    +   R++ + +AV++M AKCGS +D    +F ++P + K 
Sbjct: 550 CADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDRKD 609

Query: 414 VSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQ-F 471
           +  +N++I+  AQHG G  ++ +FR M+    ++PD  TFV+VL  CSH GLVE+G   F
Sbjct: 610 LVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCF 669

Query: 472 FESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHR 530
           F +    GI+ Q +EHY C+VD+L R G L EA   I+ MP  A+SV+W +LL AC  + 
Sbjct: 670 FLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYG 729

Query: 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKP-PGWSY 589
           + + GE A +  ++L       YV+LSN+ A   RWE++ +VR+ M +  ++K  PG S 
Sbjct: 730 DLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRVPGKSS 789

Query: 590 IEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS 649
           I     +H F A  +SHPQ+  I   L+ +   ++ AGYVP+T  V+ DV+EE+KE ++ 
Sbjct: 790 IVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLW 849

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLF- 708
           YHSEKLA+AFGLI+   + +IR+ KNLR+C DCH A K ++ + +REI VRD  RFH F 
Sbjct: 850 YHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFG 909

Query: 709 KKGNCSCMDFW 719
           K G CSC D+W
Sbjct: 910 KDGECSCGDYW 920



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 240/536 (44%), Gaps = 67/536 (12%)

Query: 10  SLLALLESC---KSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILF 65
           +L  LL  C     L Q  Q+H QIV  GL  + +  + L+  +  S C++ L  +   F
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMY--SKCRS-LDDANAAF 82

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSML--SKGIVSPNNFTFPFVLNSCA--- 120
           S + +  I  WNTL+   S   SP     LYT M    +    PN  T   VL + A   
Sbjct: 83  SALRSRGIATWNTLIAAQS---SPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGD 139

Query: 121 -------RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
                  R  S      +H  I    LE DLF+  AL+  Y   G + +A +VF      
Sbjct: 140 PSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVP 199

Query: 174 DLVSYNTLINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           DL+ +N  I   A   E P  AL L R+M    + P+  +FVA+ S+C + +   + +  
Sbjct: 200 DLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSI 259

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA V + LG +G ++++ TA++ MY +CG ++ +  VF  M +                 
Sbjct: 260 HARV-EELGFLG-DVVVATALVTMYGRCGSVDESIAVFEAMAV----------------- 300

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
                          R+ VSW AMI+ ++Q G  S A  ++ +M+  G  P+++T V  L
Sbjct: 301 ---------------RNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTAL 345

Query: 353 RACVGLGALDFGKR--LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           +A     + D G+   LH  +I       ++ + TA++ MY   G+ID A + F  IP  
Sbjct: 346 KAACSSSSQDLGESAALH-GWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPA- 403

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K +  +N++++    +G    ++ +F  M+   L P+ V+++ VL  C     V E + 
Sbjct: 404 -KNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARS 459

Query: 471 FFESMLNYGIKPQMEHYG-CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
               ++  G+  Q       +V + AR G L+EA     +     +SV W   +AA
Sbjct: 460 IHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVK-DSVSWNTKVAA 514


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/592 (38%), Positives = 368/592 (62%), Gaps = 17/592 (2%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDN-PNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101
           S+L+ F A+S  +N L  + +LF+     PN++I+NT++ G+  S+  ++A  +Y SML 
Sbjct: 2   SRLLFFSAVSHPEN-LELAILLFNHFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQ 58

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL-EFDLFIRNALIHFYSIFGYI 160
            G   P+  TF ++L +   ++  K   QIHCH + FGL   + ++RN+LI  Y   G  
Sbjct: 59  NG-TYPDRQTFLYLLQTTKFVAEVK---QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCF 114

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
             A ++F+    R++VSYNT+I G+A+V      L LF  M+   ++PD FT + +   C
Sbjct: 115 ECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLC 174

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
            +L + ++GK  HA + K++G   SN++L  A+++MY KC  + +A +VF    M K T 
Sbjct: 175 GQLGETKLGKSVHAQIEKSIG--SSNLILYNALLDMYVKCNELKLARKVFDG-PMEKDTV 231

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
           +W+++I+GY + G++E A  LF+Q+  RD+VSW ++ISGY+Q G +     LF +M +  
Sbjct: 232 SWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAEN 291

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           + PD+VT+V ++ A   +GALD G+ +H   ++ ++     F  +A+IDMY KCGSI+ A
Sbjct: 292 VKPDKVTIVNLISAVAEMGALDQGRWIHGLAVK-MLTKIEAFSGSALIDMYCKCGSIERA 350

Query: 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460
             +F +IP+  K V+ + ++I+G A HG G  ++ +F  M+    KP+ VTFV+VL ACS
Sbjct: 351 FVIFNQIPE--KDVTTWTTMITGFAFHGFGNKALELFSVMQ-AETKPNDVTFVSVLAACS 407

Query: 461 HGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW 519
           H GLV+EG + F SM   Y I+P +EHYGC+VDLL R GRL +A G+I+ MP + +  IW
Sbjct: 408 HSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIW 467

Query: 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579
            A+L+ACR+HRN ++ E A  +LL LEP+    Y+LLSN+ A   RW  +  +R++M+  
Sbjct: 468 GAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSR 527

Query: 580 GIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           G++K  G S +  +G +H F AS K HP+  +I  +L  +T +++    VP+
Sbjct: 528 GVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 579


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/605 (35%), Positives = 347/605 (57%), Gaps = 37/605 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L S  R  S + G Q+H HI+KFGL+    + + LI+ YS       + +VF+ +  + 
Sbjct: 31  LLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
             +++++I+ +AQ + P  AL  FR+M +  ++PD   + +   AC  L    +GK  H 
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +  K       ++ + +++++MYAKCG                                +
Sbjct: 151 LAVKT--GYYCDVFVGSSLVDMYAKCG--------------------------------E 176

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           I  AR LFD+M +R++VSW+ MI GY+Q+    +AL LF +     +  ++ T  +V+R 
Sbjct: 177 IGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRV 236

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C     L+ GK +H   ++ + F  + F+ +A+I +Y+KCG I+ A  VF +IP   + +
Sbjct: 237 CSSSTFLELGKLIHGLCLK-MSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT--RNL 293

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            L+NS++   AQH   +    +F EM  +G+KP+ ++F++VL ACSH GLVE+G+++F  
Sbjct: 294 GLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSL 353

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
           M +YGI+P+ EHY  +VDLL R G+L EA  +I+ MP      +W ALL  CR+H++ ++
Sbjct: 354 MRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEM 413

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
                 ++L+++      +VLLSN  A   R+EEA ++RK++ D G++K  G S++E   
Sbjct: 414 AAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGN 473

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F A  +SH +  EI   L+++  +++ AGYV +T  V+  VD EEK   + YHSE+
Sbjct: 474 KVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSER 533

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFGLI       IR+ KNLR+CGDCH A K +S+   R ++VRD  RFH F+ G CS
Sbjct: 534 LAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCS 593

Query: 715 CMDFW 719
           C D+W
Sbjct: 594 CGDYW 598



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 227/476 (47%), Gaps = 44/476 (9%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +LL      +SL+Q LQ+H  I+  GL    + S  LI+ +  S  +  LF  ++ F + 
Sbjct: 30  NLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLY--SKTQLPLFSLQV-FDET 86

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +   W++++  ++++++P  AL  +  ML+ G V P++  +P    +C  L     G
Sbjct: 87  PKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDG-VRPDDHIYPSATKACGFLRRSDVG 145

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +HC  +K G   D+F+ ++L+  Y+  G I +A  +F+    R++VS++ +I GYAQ+
Sbjct: 146 KSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQL 205

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   AL LF++     +  + FTF ++   C+      +GK  H +  K      S+  
Sbjct: 206 DDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM--SFDSSSF 263

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + +A+I++Y+KCG++                                E A Q+FD++  R
Sbjct: 264 VGSALISLYSKCGVI--------------------------------EGAYQVFDEIPTR 291

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +L  W +M+   +Q     +   LF +M ++G+ P+ ++ ++VL AC   G ++ G R +
Sbjct: 292 NLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKG-REY 350

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              + +           +++D+  + G +  A+SV  ++P    T S++ ++++G   H 
Sbjct: 351 FSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMR-PTESVWGALLTGCRIH- 408

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLC-ACSHGGLVEEGKQFFESMLNYGIKPQ 483
             +T +A F    ++ +         +L  A +  G  EE  +  + + + G+K +
Sbjct: 409 -KDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKE 463


>gi|302799324|ref|XP_002981421.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
 gi|300150961|gb|EFJ17609.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
          Length = 789

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/717 (34%), Positives = 394/717 (54%), Gaps = 51/717 (7%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
            L+L+++ +++++   +      SG +   +  + LI  +   G    L R++  F +I 
Sbjct: 116 FLSLIKAPRTIQEGEIVQEFAEKSGFDRSFVVGTALIGMYGRCG---RLDRAKDAFDRIQ 172

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129
              +  WN L+  YSR D  +++L ++  ML +GI +PN  T   + ++ A +++  + C
Sbjct: 173 ERGVVSWNALITVYSRGDEKEQSLRVFREMLLQGI-APNAVTIICIASAVAGIAAKITTC 231

Query: 130 Q--IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
              IH   I  GL     + N++I+ +   G I  A+ +FE    RD+ S+NT+I+ +AQ
Sbjct: 232 GNLIHSCSIDSGLISVTTVANSIINLFGRGGNITRANDIFEKMDRRDVCSWNTMISAFAQ 291

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL L+ +M    I+PD  TFV +  AC   +D   G+  H  V  +     S++
Sbjct: 292 NGHSSGALDLYGRMT---IRPDGVTFVNVLEACDCPDDLERGESIHRDVRAH--GYDSDL 346

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           ++ TA+++MY +CG                                +++RA ++F  +  
Sbjct: 347 IVATALVSMYRRCG--------------------------------RLDRAAEVFAAIQH 374

Query: 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR- 366
             +++  A+I+ ++Q G    +L  F +M  LGI P + T+VAVL AC   GA     R 
Sbjct: 375 PGVITLNAIIAAHAQFGRADGSLLHFRQMLQLGIRPSKFTLVAVLGACATSGAAASAGRD 434

Query: 367 LHQQYIE--NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           LH+   E        +I +  A+++MYAKCG +D A  +F   P+    VS +N+I++G 
Sbjct: 435 LHRWMAECPGDCDPHDILVRNALVNMYAKCGDLDAARGIFDAAPQG--NVSTWNAIMAGY 492

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQ 483
           AQHG    ++ +  EM+L G+ PD ++F   L A SH   VE+G + F ++  +YG+ P 
Sbjct: 493 AQHGYANMAVRLLYEMQLAGISPDPISFTAALSASSHARQVEDGARIFYAISRDYGLIPS 552

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
           +EHYG +VDLL R G L+EA G ++SM   A++  W ALL ACR+H++      A + ++
Sbjct: 553 VEHYGAVVDLLGRAGWLEEAEGFLRSMAIAADAAAWMALLGACRIHKDQDRAMRAAEAIV 612

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
            ++P HGA Y +LSN+ +   RW+EA ++R+ M ++G +K PG S+IE    +H F    
Sbjct: 613 AIDPSHGASYTVLSNVYSAAGRWDEAEEIRRRMSENGARKEPGRSWIEVKNRVHEFAVKD 672

Query: 604 KSHPQTKEIELMLKDMTMKLKS-AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
           +SHP+T EI   L ++ + LKS   YVP+   V+ DV++E +E ++ +HSEKLAL FGLI
Sbjct: 673 RSHPRTGEIYERLDELRVVLKSEEDYVPDVGSVLHDVEDEHRENLLWHHSEKLALGFGLI 732

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            ++    I I KNLRIC DCH+  KL S+  +REI+VRD  RFH F  G CSC D W
Sbjct: 733 GTKEGSKITIIKNLRICEDCHVVMKLTSKNTKREIVVRDCYRFHHFNGGACSCSDCW 789



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 156/332 (46%), Gaps = 20/332 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           + + A + +C +L     IH   + SGL +    ++ +I+ F   G    + R+  +F +
Sbjct: 222 AGIAAKITTCGNL-----IHSCSIDSGLISVTTVANSIINLFGRGG---NITRANDIFEK 273

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +D  ++  WNT++  ++++     AL LY  M     + P+  TF  VL +C      + 
Sbjct: 274 MDRRDVCSWNTMISAFAQNGHSSGALDLYGRM----TIRPDGVTFVNVLEACDCPDDLER 329

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G  IH  +   G + DL +  AL+  Y   G ++ A +VF       +++ N +I  +AQ
Sbjct: 330 GESIHRDVRAHGYDSDLIVATALVSMYRRCGRLDRAAEVFAAIQHPGVITLNAIIAAHAQ 389

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMF-SACTELNDPRIGKQFHAVVYKNLG-CVGS 245
                 +L  FR+M    I+P  FT VA+  +  T       G+  H  + +  G C   
Sbjct: 390 FGRADGSLLHFRQMLQLGIRPSKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPH 449

Query: 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
           ++L++ A++NMYAKCG ++ A  +F       + + W+++++GY + G    A +L  +M
Sbjct: 450 DILVRNALVNMYAKCGDLDAARGIFDAAPQG-NVSTWNAIMAGYAQHGYANMAVRLLYEM 508

Query: 306 D----QRDLVSWTAMISGYSQVGGFSQALELF 333
                  D +S+TA +S  S          +F
Sbjct: 509 QLAGISPDPISFTAALSASSHARQVEDGARIF 540


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/566 (38%), Positives = 326/566 (57%), Gaps = 38/566 (6%)

Query: 155 SIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV 214
           S  G++  AH +F  +   +L  +NT+I GY+    P  A+ L++ M    I P+++TF 
Sbjct: 12  SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71

Query: 215 AMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMG 274
            + +AC +L     G++ H+ + K    +     L   +I +YA CG M+ A        
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVK--AGLDFETPLLNGLIKLYAACGCMDYA-------- 121

Query: 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFG 334
                                     +FD+M + D  SW+ M+SGYSQ G   + L+L  
Sbjct: 122 ------------------------CVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLR 157

Query: 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394
           +M++  +  D  T+ +V+  C  LG LD GK +H  YI+      ++ L TA++ MY+KC
Sbjct: 158 EMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS-YIDKEGVKIDVVLGTALVGMYSKC 216

Query: 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454
           GS+D AL VF  + +  + V+ ++ +I+G A HG  E ++ +F  M+   + P+ VTF +
Sbjct: 217 GSLDNALKVFQGMAE--RDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTS 274

Query: 455 VLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           VL A SH GLVE+G Q FE+M   Y I PQ++HYGCMVDL  R G +  A+  IQ+MP +
Sbjct: 275 VLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE 334

Query: 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573
            N V+WR LL AC+ H    +GE   +K+L L+P    +YV +SN+ A   RW    QVR
Sbjct: 335 PNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVR 394

Query: 574 KLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTV 633
            LM +   +K  GWS IE N  +H+F+  ++SHP+ ++I  ML  M  KLK  G+V +TV
Sbjct: 395 SLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTV 454

Query: 634 QVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIY 693
            V+ D+DEEEKE  +  HSE+LA+A+GL+++ +   IRI KNLR C DCH   KL+SE+Y
Sbjct: 455 DVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVY 514

Query: 694 RREIMVRDAIRFHLFKKGNCSCMDFW 719
            REI++RD + FH F++  CSC D+W
Sbjct: 515 NREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 189/368 (51%), Gaps = 48/368 (13%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +  +FS   +PN+F+WNT++RGYS SDSP  A+ LY  M   GI SPN++TF FVLN+C 
Sbjct: 20  AHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGI-SPNSYTFGFVLNACC 78

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           +L     G ++H  I+K GL+F+  + N LI  Y+  G ++ A  +F+     D  S++T
Sbjct: 79  KLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWST 138

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +++GY+Q  +    L L R+MQ   +  DAFT  ++   C +L    +GK  H+ + K  
Sbjct: 139 MVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKE- 197

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             V  +++L TA++ MY+KCG ++ A +VF  M   +    WS MI+GY   G  E+A Q
Sbjct: 198 -GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHGHDEKALQ 255

Query: 301 LFDQMDQRDL----VSWTAMISGYSQVGGFSQALELFGKM-------------------- 336
           LFD M +  +    V++T+++S YS  G   +  ++F  M                    
Sbjct: 256 LFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLF 315

Query: 337 -------------ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI-------ENVV 376
                        +++ I P+ V    +L AC   G    G+ + ++ +       EN V
Sbjct: 316 CRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYV 375

Query: 377 FGRNIFLT 384
           F  N++ +
Sbjct: 376 FVSNVYAS 383



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 8/279 (2%)

Query: 18  CKSLK--QALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           CK L+  +  ++H QIV +GL+      + LI  +A  GC +    + ++F ++  P+  
Sbjct: 78  CKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMD---YACVMFDEMPEPDSA 134

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
            W+T++ GYS++    E L L   M ++  VS + FT   V+  C  L     G  +H +
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAEN-VSSDAFTLASVVGVCGDLGVLDLGKWVHSY 193

Query: 135 IIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194
           I K G++ D+ +  AL+  YS  G ++NA KVF+G   RD+ +++ +I GYA       A
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKA 253

Query: 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254
           L LF  M+ S I P+  TF ++ SA +       G Q    ++     +   +     ++
Sbjct: 254 LQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYK-ITPQIKHYGCMV 312

Query: 255 NMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293
           +++ + G++  A +   TM +  +   W +++      G
Sbjct: 313 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 351


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/624 (37%), Positives = 363/624 (58%), Gaps = 50/624 (8%)

Query: 106 SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165
           +P   T+  ++ SC   +S     ++H H+++ G + D F+   LI+ YS F  I+NA K
Sbjct: 67  NPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARK 126

Query: 166 VFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE--- 222
           VF+ +  R +  YN L    +        L ++R+M    I  D FT+  +  AC     
Sbjct: 127 VFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASEC 186

Query: 223 ----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS 278
               LN    G++ HA + ++ G  G   ++ T +++MYAK G ++ A  V         
Sbjct: 187 FVSLLNK---GREIHAHILRH-GYDGYVHIM-TTLVDMYAKFGCVSNASCV--------- 232

Query: 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM-- 336
                                  F+QM  +++VSW+AMI+ Y++ G   +ALELF ++  
Sbjct: 233 -----------------------FNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELML 269

Query: 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396
           E+  + P+ VTMV+VL+AC  L AL+ G+ +H  YI        + + +A++ MYA+CG 
Sbjct: 270 ETQDLCPNSVTMVSVLQACAALAALEQGRLIHG-YILRKGLDSILPVISALVTMYARCGK 328

Query: 397 IDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456
           ++    VF ++ K  + V  +NS+IS    HG G+ +I +F EM   G++P  ++FV+VL
Sbjct: 329 LELGQRVFDQMDK--RDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVL 386

Query: 457 CACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN 515
            ACSH GLV+EGK  F SM + +GI P +EHY CMVDLL R  RL+EA  +I++M  +  
Sbjct: 387 GACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPG 446

Query: 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575
             +W +LL +CR+H N ++ E A  +L DLEP +  +YVLL+++ AE   W+  ++V+KL
Sbjct: 447 PKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKL 506

Query: 576 MDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQV 635
           ++  G+QK PG S+IE    ++ F++  + +P+ +++  +L  ++M+LK  GYVP T  V
Sbjct: 507 LEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVV 566

Query: 636 VFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRR 695
           ++D+   EKE +V  HSEKLA+AFGLINS   E IRITK+LR+C DCH   K +S+   +
Sbjct: 567 LYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANK 626

Query: 696 EIMVRDAIRFHLFKKGNCSCMDFW 719
           EI+VRD  RFH F+ G CSC D+W
Sbjct: 627 EILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 179/366 (48%), Gaps = 52/366 (14%)

Query: 14  LLESC---KSLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQID 69
           L+ SC    SL  A ++H  ++ +G +     +++LI+ ++     + +  +R +F +  
Sbjct: 76  LILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFF---DSIDNARKVFDKTR 132

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS-- 127
           N  I+++N L R  S +   +E L +Y  M S GI S + FT+ +VL +C     F S  
Sbjct: 133 NRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPS-DRFTYTYVLKACVASECFVSLL 191

Query: 128 --GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G +IH HI++ G +  + I   L+  Y+ FG ++NA  VF     +++VS++ +I  Y
Sbjct: 192 NKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACY 251

Query: 186 AQVKEPCPALWLFRKM----QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           A+  +   AL LFR++    QD C  P++ T V++  AC  L     G+  H  + +   
Sbjct: 252 AKNGKAFEALELFRELMLETQDLC--PNSVTMVSVLQACAALAALEQGRLIHGYILRK-- 307

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
            + S + + +A++ MYA+CG + + +RVF  M   +   +W+S+IS Y   G  ++A  +
Sbjct: 308 GLDSILPVISALVTMYARCGKLELGQRVFDQMD-KRDVVSWNSLISSYGVHGFGKKAIGI 366

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
           F++M                                  G+ P  ++ V+VL AC   G +
Sbjct: 367 FEEMTYN-------------------------------GVEPSPISFVSVLGACSHAGLV 395

Query: 362 DFGKRL 367
           D GK L
Sbjct: 396 DEGKML 401



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 12/213 (5%)

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           +I    + G  +QALEL     SL  +P + T   ++ +C    +L   +R+H+  +EN 
Sbjct: 45  LIQSLCKQGNLTQALELL----SLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENG 100

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            F ++ FL T +I+MY+   SID A  VF K     +T+ ++N++   L+  G GE  + 
Sbjct: 101 -FDQDPFLATKLINMYSFFDSIDNARKVFDKTRN--RTIYVYNALFRALSLAGHGEEVLN 157

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHG----GLVEEGKQFFESMLNYGIKPQMEHYGCMV 491
           ++R M  +G+  D  T+  VL AC        L+ +G++    +L +G    +     +V
Sbjct: 158 MYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLV 217

Query: 492 DLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524
           D+ A+ G +  A  +   MP   N V W A++A
Sbjct: 218 DMYAKFGCVSNASCVFNQMPVK-NVVSWSAMIA 249



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 157/328 (47%), Gaps = 11/328 (3%)

Query: 21  LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTL 79
           L +  +IH  I+  G + ++   + L+  +A  GC   +  +  +F+Q+   N+  W+ +
Sbjct: 191 LNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGC---VSNASCVFNQMPVKNVVSWSAM 247

Query: 80  MRGYSRSDSPQEALVLYTS-MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF 138
           +  Y+++    EAL L+   ML    + PN+ T   VL +CA L++ + G  IH +I++ 
Sbjct: 248 IACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRK 307

Query: 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198
           GL+  L + +AL+  Y+  G +    +VF+    RD+VS+N+LI+ Y        A+ +F
Sbjct: 308 GLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIF 367

Query: 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYA 258
            +M  + ++P   +FV++  AC+       GK     ++   G +  ++     ++++  
Sbjct: 368 EEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHG-ICPSVEHYACMVDLLG 426

Query: 259 KCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR----QLFDQMDQRDLVSWT 314
           +   +  A ++   M +      W S++        +E A     +LFD ++  +  ++ 
Sbjct: 427 RANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFD-LEPTNAGNYV 485

Query: 315 AMISGYSQVGGFSQALELFGKMESLGIH 342
            +   Y++ G +     +   +E+ G+ 
Sbjct: 486 LLADIYAEAGMWDGVKRVKKLLEARGLQ 513


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/729 (32%), Positives = 395/729 (54%), Gaps = 66/729 (9%)

Query: 12  LALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           + LL  C    SL  A  +HG +  +G    +  ++ L++ +   G       +R LF  
Sbjct: 82  VPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARD---ARRLFDG 138

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N+  W  L+ GY+ +  P   L ++  ML  G   P+++T    LN+C        
Sbjct: 139 MPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRY-PSHYTLGATLNACLASCDVDL 197

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H + IK+G E    + N+L   Y+  G +++A + F     ++++++ T+I+  A+
Sbjct: 198 GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE 257

Query: 188 VKEPCP-ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
            +E     L LF  M    + P+ FT  ++ S C    D  +GKQ  A  +K +GC  +N
Sbjct: 258 DEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK-IGC-ETN 315

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +K + + +Y                                 R+G+ + A +LF+QM+
Sbjct: 316 LPVKNSTMYLY--------------------------------LRKGETDEAMRLFEQME 343

Query: 307 QRDLVSWTAMISGYSQV------------GGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
              +++W AMISGY+Q+             GF QAL +F  ++   + PD  T  ++L  
Sbjct: 344 DASIITWNAMISGYAQIMDSAKDDLQARSRGF-QALTIFRDLKRSVMKPDLFTFSSILSV 402

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C  + AL+ G+++H Q I++  F  ++ + +A+++MY KCG I  A   F ++P   +T 
Sbjct: 403 CSAMMALEQGEQIHAQTIKSG-FLSDVVVNSALVNMYNKCGCIQDANKAFLEMPT--RTF 459

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
             + S+ISG +QHG  + +I +F EM L G++P+ +TFV++L ACS+ GLVEE + +F+ 
Sbjct: 460 VTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDM 519

Query: 475 MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAK 533
           M   Y I+P ++HYGCM+D+  R GR+++A+  I+   ++ N  IW +L+A CR H N +
Sbjct: 520 MKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNME 579

Query: 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM--DDSGIQKPPGWSYIE 591
           +   A  KLL+L+P     Y+LL NM   T RW++  +VRKLM  +D GI +   W  I+
Sbjct: 580 LAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIK 639

Query: 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVS-- 649
               ++ F A+ ++HPQ  E+  +L+++  K K+ GY P     + D +++EK    S  
Sbjct: 640 DK--VYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLK 697

Query: 650 YHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709
           +HSE+LA+A GL+ +    T+R+TKN+ +C DCH + KL S +  REI+VRD+ R H FK
Sbjct: 698 HHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFK 757

Query: 710 KGNCSCMDF 718
            G CSC DF
Sbjct: 758 DGRCSCGDF 766


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/689 (33%), Positives = 374/689 (54%), Gaps = 70/689 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARL 122
           LF+ +   +   +N ++ G+S   +   A+ LY ++L  G  V P+  T   ++ + + L
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
                G Q HC I++ G   + F+ + L+  Y+  G I +A +VF+    +++V YNT+I
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 183 NGYAQVK--------------EPC-----------------PALWLFRKMQDSCIQPDAF 211
            G  + K                C                  AL  FR+M+   I  D +
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQY 273

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
           TF ++ +AC  L+    GKQ HA + +       N+ + +A+++MY+KC  +  AE  F 
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTH--YDDNVFVGSALVDMYSKCRSIKPAETAFR 331

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                                           +M  ++++SWTA+I GY Q G   +A+ 
Sbjct: 332 --------------------------------RMSCKNIISWTALIVGYGQNGCSEEAVR 359

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           +F +M+  GI PD+ T+ +V+ +C  L +L+ G + H   + + +    I ++ A++ +Y
Sbjct: 360 VFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM-HYITVSNALVTLY 418

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
            KCGSI+ A  +F ++  + +    + ++++G AQ G  + +I +F +M    +KPDGVT
Sbjct: 419 GKCGSIEDAHRLFDEMLFHDQVS--WTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVT 476

Query: 452 FVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510
           F+ VL ACS  G VE+G  +F SM  ++GI P  +HY CM+DL +R GRL EA   I+ M
Sbjct: 477 FIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQM 536

Query: 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570
           P   +++ W  LL+ACRL  + +IG+ A + LL+++P + A YVLL +M A    W +  
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVA 596

Query: 571 QVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVP 630
           Q+R+ M D  ++K PG S+I++   +H F A  +SHP +K I   L+ +  K+   GY P
Sbjct: 597 QLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKP 656

Query: 631 NTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLS 690
           +   V+ DV + +K  +VS+HSEKLA+AFGL+    +  IRI KNLR+C DCH A KL+S
Sbjct: 657 DVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLIS 716

Query: 691 EIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           +I  R+I+VRDA+RFH F  G CSC DFW
Sbjct: 717 KITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 223/410 (54%), Gaps = 11/410 (2%)

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM- 201
           +LF  NAL+   +    +++   +F     RD VSYN +I G++       A+ L+  + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 202 -QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
              S ++P   T  AM  A + L D  +G+QFH  + + LG  G N  + + ++ MYAK 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILR-LG-FGVNAFVGSPLVGMYAKM 188

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           GL+  A+RVF  M   K+   +++MI+G  R   +E AR+LF+ M  RD ++WT M++G+
Sbjct: 189 GLIGDAKRVFDEMD-GKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGF 247

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
           +Q G  SQAL  F +M   GI  D+ T  ++L AC  L AL+ GK++H  YI    +  N
Sbjct: 248 TQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIH-AYIIRTHYDDN 306

Query: 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440
           +F+ +A++DMY+KC SI  A + F ++  + K +  + ++I G  Q+G  E ++ VF EM
Sbjct: 307 VFVGSALVDMYSKCRSIKPAETAFRRM--SCKNIISWTALIVGYGQNGCSEEAVRVFSEM 364

Query: 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500
           +  G+ PD  T  +V+ +C++   +EEG QF    L  G+   +     +V L  + G +
Sbjct: 365 QRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSI 424

Query: 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL--DLEPD 548
           ++A+ L   M +  + V W AL+        AK      +K+L  D++PD
Sbjct: 425 EDAHRLFDEMLFH-DQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPD 473



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 164/327 (50%), Gaps = 9/327 (2%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L    +  +L+Q  QIH  I+ +  + ++   S L+  +  S C++ +  +   F ++
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMY--SKCRS-IKPAETAFRRM 333

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              NI  W  L+ GY ++   +EA+ +++ M   GI  P++FT   V++SCA L+S + G
Sbjct: 334 SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI-DPDDFTLGSVISSCANLASLEEG 392

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q HC  +  GL   + + NAL+  Y   G I +AH++F+  L  D VS+  L+ GYAQ 
Sbjct: 393 AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQF 452

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                 + LF KM    ++PD  TF+ + SAC+       G  +   + K+ G V  +  
Sbjct: 453 GRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDH 512

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE---RARQLFDQM 305
             T +I++Y++ G +  AE     M M      W +++S     G +E    A +   ++
Sbjct: 513 Y-TCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEI 571

Query: 306 DQRDLVSWTAMISGYSQVGGFSQALEL 332
           D ++  S+  + S ++  G ++Q  +L
Sbjct: 572 DPQNPASYVLLCSMHATKGNWNQVAQL 598



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 188/424 (44%), Gaps = 75/424 (17%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF  + + +   W T++ G++++    +AL  +  M  +GI + + +TF  +L +C 
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGI-AIDQYTFGSILTACG 283

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            LS+ + G QIH +II+   + ++F+ +AL+  YS    I  A   F     ++++S+  
Sbjct: 284 ALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTA 343

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI GY Q      A+ +F +MQ   I PD FT  ++ S+C  L     G QFH +    +
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLAL--V 401

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
             +   + +  A++ +Y KCG +  A R+F  M +     +W+++++GY + G   RA++
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM-LFHDQVSWTALVTGYAQFG---RAKE 457

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
             D                            LF KM +  + PD VT + VL AC   G 
Sbjct: 458 TID----------------------------LFEKMLAKDVKPDGVTFIGVLSACSRAGF 489

Query: 361 LDFG-KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           ++ G    H    ++ +   +    T +ID+Y++ G +  A     ++P           
Sbjct: 490 VEKGCSYFHSMQKDHGIVPIDDHY-TCMIDLYSRSGRLKEAEEFIKQMP----------- 537

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
                                    + PD + + T+L AC   G +E G+   E++L   
Sbjct: 538 -------------------------MHPDAIGWGTLLSACRLRGDMEIGQWAAENLLE-- 570

Query: 480 IKPQ 483
           I PQ
Sbjct: 571 IDPQ 574



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 135/319 (42%), Gaps = 68/319 (21%)

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD------------------------- 303
           +  T+     T   + +++ Y + G+  RAR++FD                         
Sbjct: 31  ILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDD 90

Query: 304 ------QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG--IHPDEVTMVAVLRAC 355
                  M QRD VS+ A+I+G+S  G  ++A+ L+  +   G  + P  +TM A++ A 
Sbjct: 91  MDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAA 150

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             LG    G++ H Q I  + FG N F+ + ++ MYAK G I  A  VF ++  + K V 
Sbjct: 151 SALGDRALGRQFHCQ-ILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEM--DGKNVV 207

Query: 416 LFNSIISGL-------------------------------AQHGLGETSIAVFREMELMG 444
           ++N++I+GL                                Q+GL   ++  FR M   G
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQG 267

Query: 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           +  D  TF ++L AC     +E+GKQ    ++       +     +VD+ ++   +  A 
Sbjct: 268 IAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAE 327

Query: 505 GLIQSMPYDANSVIWRALL 523
              + M    N + W AL+
Sbjct: 328 TAFRRMSCK-NIISWTALI 345


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/662 (35%), Positives = 366/662 (55%), Gaps = 56/662 (8%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           W+++++ Y+       +   + SM S   V PN   FP +L +   L   K    +H   
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLS-VPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 136 IKFGLEFDLFIRNALIHFYSIF---------------GYINNAHKVFEGSLARDLVSYNT 180
           ++ GL+ DL+I NALI+ Y+ F                 I+   KVF+    RD+VS+NT
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 181 LINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239
           +I G+AQ      AL + R+M ++  ++PD+FT  ++     E  D   GK+ H    +N
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299
            G  G ++ + +++I+MYAKC                                 ++E + 
Sbjct: 257 -GFDG-DVFIGSSLIDMYAKCN--------------------------------RLECSL 282

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359
           + F  + ++D +SW ++I+G  Q G F + L  F +M    + P  V+  +V+ AC  L 
Sbjct: 283 RAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLT 342

Query: 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           AL  G++LH   I  + F  N F+ ++++DMYAKCG+I  A  VF +I K  + +  + +
Sbjct: 343 ALSLGRQLHG-CIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDK--RDMVAWTA 399

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNY 478
           II G A HG    ++++F  M   G++P  V F+ VL ACSH GLV+EG ++F SM  ++
Sbjct: 400 IIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDF 459

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNAKIGEI 537
           GI P +EHY  + DLL R GRL+EAY  I +M        +W  LLAACR H++ ++ E 
Sbjct: 460 GIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEK 519

Query: 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLH 597
              KLL ++ ++   YVL+SN+ +   RW++A ++R  M   G++K P  S+IE    +H
Sbjct: 520 VLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVH 579

Query: 598 RFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
            F+A  KSHP   +I   L  +  +++  GYV +T QV+ DVDEE K  ++  HSE+LA+
Sbjct: 580 TFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAI 639

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           A+G+I++ +  TIR+ KN+R+C DCH A K +++I  REI VRD  RFH FK G+CSC D
Sbjct: 640 AYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGD 699

Query: 718 FW 719
           +W
Sbjct: 700 YW 701



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 193/423 (45%), Gaps = 43/423 (10%)

Query: 5   VLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRS 61
           +L+H  L   L +C     L   L I   ++++    H ++ ++   F   G ++G+   
Sbjct: 122 LLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFH-NAGKVFDVFPKRG-ESGIDCV 179

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           + +F  +   ++  WNT++ G++++    EAL +   M   G + P++FT   +L   A 
Sbjct: 180 KKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAE 239

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
                 G +IH + ++ G + D+FI ++LI  Y+    +  + + F     +D +S+N++
Sbjct: 240 HVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSI 299

Query: 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG 241
           I G  Q  E    L  FR+M    ++P A +F ++  AC  L    +G+Q H  + + LG
Sbjct: 300 IAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR-LG 358

Query: 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301
               N  + +++++MYAKCG + MA  VF                               
Sbjct: 359 -FDDNEFIASSLVDMYAKCGNIKMARYVF------------------------------- 386

Query: 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361
            D++D+RD+V+WTA+I G +  G    A+ LF  M   G+ P  V  +AVL AC   G +
Sbjct: 387 -DRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLV 445

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
           D G R       +      +    AV D+  + G ++ A    Y    N++ V    S+ 
Sbjct: 446 DEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEA----YDFISNMRGVQPTGSVW 501

Query: 422 SGL 424
           S L
Sbjct: 502 SIL 504



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
           +W+++I  Y+       +   F  M SL + P+     ++L+A   L        LH   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 372 IENVVFGRNIFLTTAVIDMYAKC---------------GSIDTALSVFYKIPKNLKTVSL 416
           +  +    ++++  A+I+ YAK                  ID    VF  +P  ++ V  
Sbjct: 137 VR-LGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMP--VRDVVS 193

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
           +N++I+G AQ+G+   ++ + REM   G LKPD  T  ++L   +    V +GK+     
Sbjct: 194 WNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYA 253

Query: 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           +  G    +     ++D+ A+  RL+ +      +P   +++ W +++A C
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPR-KDAISWNSIIAGC 303


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/623 (38%), Positives = 337/623 (54%), Gaps = 51/623 (8%)

Query: 105 VSPNNFTF---PFVLNSCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYI 160
           +SPN+        V   C+RL     G   H  IIK        FI N L++ YS     
Sbjct: 4   LSPNSLASLVESAVSTQCSRL-----GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRP 58

Query: 161 NNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220
           N+A  +   +  R +V++  LI G  Q      AL+ F  M+   IQP+ FTF   F A 
Sbjct: 59  NSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKAS 118

Query: 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA 280
             L  P +GKQ HA+  K  G + S++ +  +  +MY+K GL   A ++F  M   ++ A
Sbjct: 119 GSLRSPLVGKQVHALAVK-AGQI-SDVFVGCSAFDMYSKAGLTEEARKMFDEMP-ERNIA 175

Query: 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340
            W++ +S    EG+                               +  AL  F +    G
Sbjct: 176 TWNAYLSNSVLEGR-------------------------------YDDALTAFIEARKEG 204

Query: 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400
           I P +  + +VL AC GL  L+ GK +H   ++  V G NIF+ +A++DMY KCGSI+ A
Sbjct: 205 IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVG-NIFVGSALVDMYGKCGSIEDA 263

Query: 401 LSVFYKIP-KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG--LKPDGVTFVTVLC 457
              F ++P +NL T   +N++I G A  G  + ++ +F EM      + P+ VTFV VL 
Sbjct: 264 ERAFDEMPERNLVT---WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLS 320

Query: 458 ACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516
           ACS  G V  G + FESM   YGI+P  EHY C+VDLL R G +++AY  I+ MP     
Sbjct: 321 ACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTV 380

Query: 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576
            +W ALL A ++   +++G++A   L +L+P    ++VLLSNM A   RWEEA  VRK M
Sbjct: 381 SVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEM 440

Query: 577 DDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV 636
            D GI+K  G S+I     +H F A   SH +  EI+ ML  +  ++++AGY+P+T   +
Sbjct: 441 KDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFAL 500

Query: 637 FDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRRE 696
           FD++EEEK   V YHSEK+ALAFGLI+  +   IRITKNLRICGDCH A K +S I  RE
Sbjct: 501 FDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGRE 560

Query: 697 IMVRDAIRFHLFKKGNCSCMDFW 719
           I+VRD   FH F+   CSC D+W
Sbjct: 561 IIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 211/485 (43%), Gaps = 51/485 (10%)

Query: 6   LEHSSLLALLES-----CKSLKQALQIHGQIVHSGLNHHISS---SQLISFFALSGCKNG 57
           L  +SL +L+ES     C  L +A   H QI+ + L++ + S   + L++ ++     N 
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRA--AHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNS 60

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLN 117
              +++L S   N ++  W  L+ G  ++     AL  +++M    I  PN+FTFP    
Sbjct: 61  ---AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI-QPNDFTFPCAFK 116

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS 177
           +   L S   G Q+H   +K G   D+F+  +    YS  G    A K+F+    R++ +
Sbjct: 117 ASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
           +N  ++          AL  F + +   I+P  F   ++ SAC  L+   +GK  H +  
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV 236

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           K   CV  N+ + +A+++MY KCG +  AER F  M   ++   W++MI GY  +G+ + 
Sbjct: 237 K--ACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGGYAHQGQADM 293

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           A  LFD+           M  G  +V                   P+ VT V VL AC  
Sbjct: 294 AVTLFDE-----------MTCGSHRVA------------------PNYVTFVCVLSACSR 324

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
            G+++ G  + +                 V+D+  + G ++ A     K+P    TVS++
Sbjct: 325 AGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR-PTVSVW 383

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESML 476
            +++   A    G++ +       L  L P D    V +    +  G  EE     + M 
Sbjct: 384 GALLG--ASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMK 441

Query: 477 NYGIK 481
           + GIK
Sbjct: 442 DVGIK 446


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/665 (34%), Positives = 349/665 (52%), Gaps = 58/665 (8%)

Query: 76  WNTLMRGYSRSDSPQEALVLYTSM-LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCH 134
           W   +R  +      +A+ L+  M  S    S    + P  L SCA L     G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 135 IIKFGLEFDLFIRNALIHFYSIF--GYINNA-----------------HKVFEGSLARDL 175
            I+ G   D F  NAL++ Y      Y+++                   KVF+  + RD+
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235
           VS+NTL+ G A+      AL   RKM     +PD+FT   +     E  D + G + H  
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295
            ++N     S++ + +++I+MYA C                                 + 
Sbjct: 196 AFRN--GFDSDVFVGSSLIDMYANCT--------------------------------RT 221

Query: 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355
           + + ++FD +  RD + W ++++G +Q G   +AL +F +M   G+ P  VT  +++  C
Sbjct: 222 DYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVC 281

Query: 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
             L +L FGK+LH  Y+    F  N+F+++++IDMY KCG I  A  +F K+      V 
Sbjct: 282 GNLASLRFGKQLHA-YVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSS--PDVV 338

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            + ++I G A HG    ++ +F  MEL   KP+ +TF+ VL ACSH GLV++G ++F+SM
Sbjct: 339 SWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSM 398

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
            N YGI P +EH+  + D L R G LDEAY  I  M     + +W  LL ACR+H+N  +
Sbjct: 399 SNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTML 458

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
            E   +K+++LEP     +V+LSNM + + RW EA  +R+ M   G++K P  S+IE   
Sbjct: 459 AEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKS 518

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            LH F+A  +SHP    I   L   + ++   G+VPNT  V  D++EE K  V+  HSEK
Sbjct: 519 KLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEK 578

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+ FG+I++ +   IR+ KNLR+C DCH   K +S++  REI+VRDA RFH FK GNCS
Sbjct: 579 LAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCS 638

Query: 715 CMDFW 719
           C DFW
Sbjct: 639 CGDFW 643



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 213/494 (43%), Gaps = 59/494 (11%)

Query: 9   SSLLALLESCKSL---KQALQIHGQIVHSG-LNHHISSSQLISFFA-------------- 50
           +SL A L+SC +L        +H   + SG      +++ L++ +               
Sbjct: 51  ASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAI 110

Query: 51  --LSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN 108
             + G        R +F ++   ++  WNTL+ G +      EAL     M  +G   P+
Sbjct: 111 VDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGF-RPD 169

Query: 109 NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168
           +FT   VL   A  +  K G ++H    + G + D+F+ ++LI  Y+     + + KVF+
Sbjct: 170 SFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFD 229

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
               RD + +N+L+ G AQ      AL +FR+M  + ++P   TF ++   C  L   R 
Sbjct: 230 NLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRF 289

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           GKQ HA  Y   G    N+ + +++I+MY KCG +++A  +F  M  S    +W++MI G
Sbjct: 290 GKQLHA--YVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMG 346

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
           Y   G    AR+                            AL LF +ME     P+ +T 
Sbjct: 347 YALHGP---ARE----------------------------ALVLFERMELGNAKPNHITF 375

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           +AVL AC   G +D G +  +    +      +    A+ D   + G +D A +   K+ 
Sbjct: 376 LAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKM- 434

Query: 409 KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEE 467
           +   T S++++++     H    T +A     ++M L+P  +    VL    S  G   E
Sbjct: 435 QIKPTASVWSTLLRACRVH--KNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNE 492

Query: 468 GKQFFESMLNYGIK 481
                ESM   G+K
Sbjct: 493 AAHLRESMRKKGMK 506



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           S++L +   C  +K+ L++HG    +G +  +   S LI  +A   C    +  ++ F  
Sbjct: 174 STVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYA--NCTRTDYSVKV-FDN 230

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   +  +WN+L+ G +++ S +EAL ++  ML  G V P   TF  ++  C  L+S + 
Sbjct: 231 LPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPVCGNLASLRF 289

Query: 128 GCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
           G Q+H ++I  G E ++FI ++LI  Y   G I+ AH +F+   + D+VS+  +I GYA 
Sbjct: 290 GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYAL 349

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
                 AL LF +M+    +P+  TF+A+ +AC+       G ++   +  + G V + +
Sbjct: 350 HGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPT-L 408

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---YTREGKIERARQLFDQ 304
               A+ +   + G ++ A    S M +  + + WS+++     +      E   +   +
Sbjct: 409 EHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME 468

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           ++ R + S   + + YS  G +++A  L   M   G+  D
Sbjct: 469 LEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKD 508


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/638 (38%), Positives = 354/638 (55%), Gaps = 36/638 (5%)

Query: 97  TSMLSK----GIVSPNNFTFPFVLNSCARLSSFKSGCQ----------IHCHIIKFGLEF 142
           +SMLS       + PN+ T P   N+  R   F S  Q          I+  II+     
Sbjct: 5   SSMLSPVAGCSALPPNSGTKP--KNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQ 62

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
           D F+   L+   S    I  A K+F  +   ++  Y  LI+G          + L+ +M 
Sbjct: 63  DPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMI 122

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL 262
           +S + PD++   ++  AC      + G++ H+ V K LG + SN  ++  +I +Y KCG 
Sbjct: 123 NSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLK-LG-LSSNRSIRIKLIELYGKCGA 180

Query: 263 MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ 322
              A RVF  M   +   A + MI+ Y   G              +D V WTAMI G  +
Sbjct: 181 FEDARRVFDEMP-ERDVVASTVMINYYFDHGI-------------KDTVCWTAMIDGLVR 226

Query: 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF 382
            G  ++ALE+F  M+   + P+EVT+V VL AC  LGAL  G R  + Y++      N F
Sbjct: 227 NGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLG-RWVRSYMDKHRIELNHF 285

Query: 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442
           +  A+I+MY++CG ID A  VF ++ +  K V  +NS+I G A HG    ++ +FR +  
Sbjct: 286 VGGALINMYSRCGDIDEAQRVFEQMKE--KNVITYNSMIMGFALHGKSVEAVELFRGLIK 343

Query: 443 MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLD 501
            G  P  VTFV VL ACSHGGL E G + F SM  +YGI+PQ+EHYGCMVDLL R GRL+
Sbjct: 344 QGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLE 403

Query: 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561
           EAY  I+ M    + V+  ALL+AC++H N ++ E   + L+  +      Y+LLSN  +
Sbjct: 404 EAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYS 463

Query: 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTM 621
            + +W+EA +VR  M + GI+K PG S IE N  +H FL     HPQ ++I   L+++  
Sbjct: 464 SSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQ 523

Query: 622 KLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGD 681
            L+  GY P T  V+ D+++ EKE  ++ HSE+LA+ +GLI+++   T+R+ KNLR+C D
Sbjct: 524 ILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCND 583

Query: 682 CHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           CHL  KL+S I RR+I+VRD  RFH F+ G CSC D+W
Sbjct: 584 CHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 216/493 (43%), Gaps = 61/493 (12%)

Query: 11  LLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKN--GLFRSRILFSQI 68
            ++LL++CK   Q   I+ +I+    NHH      + F  L  C N   +  +  +FS  
Sbjct: 35  FISLLQNCKHNNQIPPIYAKIIR---NHH-HQDPFVVFELLRVCSNLNSIGYASKIFSHT 90

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            NPN++++  L+ G   S    + + LY  M++  +V P+++    VL +C    + K G
Sbjct: 91  QNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLV-PDSYAVTSVLKACGCHLALKEG 149

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN----- 183
            ++H  ++K GL  +  IR  LI  Y   G   +A +VF+    RD+V+   +IN     
Sbjct: 150 REVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDH 209

Query: 184 -------------GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
                        G  +  E   AL +FR MQ   + P+  T V + SAC+EL   ++G+
Sbjct: 210 GIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGR 269

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
              + + K+   +  N  +  A+INMY++CG ++ A+RVF  M   K+   ++SMI G+ 
Sbjct: 270 WVRSYMDKHR--IELNHFVGGALINMYSRCGDIDEAQRVFEQM-KEKNVITYNSMIMGFA 326

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
             GK                                 +A+ELF  +   G  P  VT V 
Sbjct: 327 LHGK-------------------------------SVEAVELFRGLIKQGFTPSSVTFVG 355

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410
           VL AC   G  + G  +     ++      I     ++D+  + G ++ A S F ++ K 
Sbjct: 356 VLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYS-FIRMMKV 414

Query: 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
                +  +++S    HG  E +  V + + +     D  T++ +  A S  G  +E  +
Sbjct: 415 APDHVMLGALLSACKIHGNLELAERVAKSL-VACKNADSGTYILLSNAYSSSGKWKEAAE 473

Query: 471 FFESMLNYGIKPQ 483
              +M   GI+ +
Sbjct: 474 VRTNMREEGIEKE 486



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 169/366 (46%), Gaps = 30/366 (8%)

Query: 4   LVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFR 60
           LV +  ++ ++L++C    +LK+  ++H Q++  GL+   + S  I    L G K G F 
Sbjct: 126 LVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSS--NRSIRIKLIELYG-KCGAFE 182

Query: 61  -SRILFSQIDNPNIF------------------IWNTLMRGYSRSDSPQEALVLYTSMLS 101
            +R +F ++   ++                    W  ++ G  R+     AL ++ +M  
Sbjct: 183 DARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQR 242

Query: 102 KGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161
           + ++ PN  T   VL++C+ L + + G  +  ++ K  +E + F+  ALI+ YS  G I+
Sbjct: 243 EDVM-PNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDID 301

Query: 162 NAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221
            A +VFE    +++++YN++I G+A   +   A+ LFR +      P + TFV + +AC+
Sbjct: 302 EAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACS 361

Query: 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAA 281
                 +G +    + K+ G +   +     ++++  + G +  A      M ++     
Sbjct: 362 HGGLAELGFEIFHSMAKDYG-IEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVM 420

Query: 282 WSSMISGYTREGKIERARQLFDQM---DQRDLVSWTAMISGYSQVGGFSQALELFGKMES 338
             +++S     G +E A ++   +      D  ++  + + YS  G + +A E+   M  
Sbjct: 421 LGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMRE 480

Query: 339 LGIHPD 344
            GI  +
Sbjct: 481 EGIEKE 486


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/717 (33%), Positives = 394/717 (54%), Gaps = 50/717 (6%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SSL+      KS+    +I    +  G  HH   ++LI  +   G    +  +R +F +
Sbjct: 80  YSSLIQQCIGIKSITDITKIQSHALKRGF-HHSLGNKLIDAYLKCG---SVVYARKVFDE 135

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           + + +I  WN+++  Y R+   +EA+ +Y  M+  GI+ P+ FTF  V  + + L     
Sbjct: 136 VPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL-PDEFTFSSVFKAFSDLGLVHE 194

Query: 128 GCQIHCHIIKFGLEF-DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYA 186
           G + H   +  G+   ++F+ +AL+  Y+ FG + +A  V +  + +D+V +  LI GY+
Sbjct: 195 GQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYS 254

Query: 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246
              E   +L +FR M    I+ + +T  ++   C  L D   G+  H ++ K    + S 
Sbjct: 255 HHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVK--AGLESA 312

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           +  +T+++ MY +CGL++ + +VF    ++ +   W+S+I G  + G+ E A   F QM 
Sbjct: 313 VASQTSLLTMYYRCGLVDDSLKVFKQF-INPNQVTWTSVIVGLVQNGREEIALLKFRQML 371

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
           +                                 I P+  T+ +VLRAC  L  L+ GK+
Sbjct: 372 RS-------------------------------SITPNSFTLSSVLRACSSLAMLEQGKQ 400

Query: 367 LHQQYIENVVFGRNI--FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
           +H   ++   FG +I  ++  A+ID Y KCGS + A SVF  + + +  VS+ NS+I   
Sbjct: 401 IHAIVMK---FGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLE-VDVVSV-NSMIYSY 455

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQ 483
           AQ+G G  ++ +F  M+  GL+P+ VT++ VL AC++ GL+EEG   F S  N G I+  
Sbjct: 456 AQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELT 515

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            +HY CMVDLL R GRL EA  LI  +   ++ VIWR LL+ACR+H + ++ +    +++
Sbjct: 516 KDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVI 574

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           DL P+ G  +VLLSN+ A T  W +  +++  M +  ++K P  S+++    +H F+A  
Sbjct: 575 DLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGD 634

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
            SHP  ++I   L+++  K+K  GYVP+T  V+ D+DEE+K   + YHSEKLA+AF L  
Sbjct: 635 WSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWR 694

Query: 664 SRSKE-TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           S  K  TIRI KNLR+CGDCH   K +S+I  R+I+ RD  RFH F+ G CSC D+W
Sbjct: 695 SNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/657 (35%), Positives = 364/657 (55%), Gaps = 48/657 (7%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS-G 128
           +P +  +   + G ++   P +AL  + +ML  G+  PN+FTFP    + A      + G
Sbjct: 81  SPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGL-RPNDFTFPSAFKAAASAPPRSAAG 139

Query: 129 CQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQ 187
            Q+H   ++FG L  D F+  A +  Y   G +  A ++F+    R++V++N ++     
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVL 199

Query: 188 VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC-VGSN 246
              P   +  +  ++ +   P+  +  A F+AC  + +  +G+QF+  V K   C  G +
Sbjct: 200 DGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAK---CGFGKD 256

Query: 247 MLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306
           + +  +V++ Y KC                                  + +AR +FD M 
Sbjct: 257 VSVSNSVVDFYGKCRC--------------------------------VGKARAVFDGMG 284

Query: 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366
            R+ VSW +M+  Y+Q G   +A  ++      G  P +  + +VL  C GL  LD G+ 
Sbjct: 285 VRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRA 344

Query: 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNLKTVSLFNSIISGLA 425
           LH   + + +   NIF+ +A++DMY KCG I+ A  VF+++P +NL T   +N++I G A
Sbjct: 345 LHAVAVRSCI-DSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVT---WNAMIGGYA 400

Query: 426 QHGLGETSIAVFREMELMGLK--PDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKP 482
             G    +++VF +M +MG +  P+ +T V VL ACS GGL +EG + F++M   +GI+P
Sbjct: 401 HIGDAHNALSVFDKM-IMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEP 459

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542
           ++EHY C+VDLL R G  + AY +IQ MP   +  +W ALL  C++H   ++G IA +KL
Sbjct: 460 RIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKL 519

Query: 543 LDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLAS 602
            +L+P    ++VLLSNMLA   RW EA  VRK M + GI+K PG S+I     +H F A 
Sbjct: 520 FELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAK 579

Query: 603 KKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLI 662
             +H   +EI+ +L  +  ++++AGY+P+T   ++D++EEEKE+ V  HSEKLALAFGLI
Sbjct: 580 DTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLI 639

Query: 663 NSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
                  IRI KNLRIC DCH AFK +S I  REI+VRD   FH FK   CSC D+W
Sbjct: 640 CIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 6/179 (3%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQ 67
           SS+L        L     +H   V S ++ +I  +S L+  +   G   G+  +  +F +
Sbjct: 327 SSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCG---GIEDAEQVFFE 383

Query: 68  IDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKS 127
           +   N+  WN ++ GY+       AL ++  M+     +PN  T   VL +C+R    K 
Sbjct: 384 MPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKE 443

Query: 128 GCQI-HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS-YNTLING 184
           G ++      +FG+E  +     ++      G    A+K+ +G   R  +S +  L+ G
Sbjct: 444 GYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGG 502


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 329/568 (57%), Gaps = 36/568 (6%)

Query: 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAF 211
            Y+  G   +  K+F+    +DLV +  +I  Y Q ++P  AL LF+KMQ +  +  D+ 
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 212 TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271
             V++ SA  +L D +     H   ++    +   + +  +++ M+ KCG          
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRK--SLIEELCVGNSILAMHTKCG---------- 108

Query: 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALE 331
                                   E+AR +FD M +RD++SW +M+SGY+Q G  ++AL 
Sbjct: 109 ----------------------NTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALL 146

Query: 332 LFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
           LF +M      P  VT + ++ AC  LG    G++ H  +I +     +  L+ A++DMY
Sbjct: 147 LFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHD-FIVDSRMEIDTNLSNALMDMY 205

Query: 392 AKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451
           AKCG ++ A+ +F  IP   +    +N +ISG   HG G+ ++ +F  M+  G++P+  T
Sbjct: 206 AKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFT 265

Query: 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511
           F ++L ACSH GL++EG++ F  M    +  + +H+ C+VD+L R G L EA+ LI+ MP
Sbjct: 266 FTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMP 325

Query: 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571
              +  +W ALL AC++H N ++G+ A   LL LEP+H  +YVL+SN+ A + +W+E  +
Sbjct: 326 SPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWK 385

Query: 572 VRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631
           +R+ M + G++KP  +S IE+   +  F  + + +P   E+   ++ + +++K AGYVP+
Sbjct: 386 LRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPD 445

Query: 632 TVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSE 691
               + DV+EE+KE +++YHSEKLA+AFG++       IR+TKNLR+C DCH AFK +S 
Sbjct: 446 LSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISH 505

Query: 692 IYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           IY+R+I+VRDA RFH F+ G CSC D+W
Sbjct: 506 IYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 195/407 (47%), Gaps = 45/407 (11%)

Query: 55  KNGLF-RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113
           K GLF   R +F ++   ++  W  ++  Y +++ P+EAL+L+  M  +  +  ++    
Sbjct: 4   KCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVV 63

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173
            V ++  +L   K+   +H +  +  L  +L + N+++  ++  G    A  VF+  + R
Sbjct: 64  SVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMER 123

Query: 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233
           D++S+N++++GY Q  +   AL LF +M+DS  QP   T + M SAC  L    +G++FH
Sbjct: 124 DVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFH 183

Query: 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA-AWSSMISGYTRE 292
             +  +   + +N  L  A+++MYAKCG +  A  +F+ +  ++  A +W+ +ISGY   
Sbjct: 184 DFIVDSRMEIDTN--LSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G  + A +LF +M +                                G+ P+  T  ++L
Sbjct: 242 GHGKEALELFSRMQEE-------------------------------GVEPNHFTFTSIL 270

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC   G +D G++   + ++ +           V+DM  + G +  A  +  ++P +  
Sbjct: 271 SACSHAGLIDEGRKCFAE-MKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMP-SPP 328

Query: 413 TVSLFNSIISGLAQHG---LGETSIAVFREMELMGLKPDGVTFVTVL 456
           +  ++ +++     HG   LG+T+ +      L+ L+P+   +  ++
Sbjct: 329 SDGVWGALLLACKIHGNMELGKTAAS-----NLLQLEPNHTGYYVLM 370


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/664 (35%), Positives = 371/664 (55%), Gaps = 36/664 (5%)

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
           +LF Q+   N   +N ++ GY ++    +A  ++  M  + +VS  +    +V       
Sbjct: 73  LLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEE 132

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY-----INNAHKVFEGSLARDLVS 177
           +                L +++  RN +     I G      I++A K+F+    +D+V 
Sbjct: 133 AE--------------KLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVV 178

Query: 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237
              +I GY QV     A  LF +M+      + FT+  M S   +     + ++   V+ 
Sbjct: 179 VTNMIGGYCQVGRLDEARELFDEMKVR----NVFTWTTMVSGYAKNGRVDVARKLFEVMP 234

Query: 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297
           +       N +  TA++  Y + G M  A  +F  M + K   A + MI  +   G++ R
Sbjct: 235 ER------NEVSWTAMLMGYTQSGRMKEAFELFEAMPV-KWIVACNEMILQFGLAGEMHR 287

Query: 298 ARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357
           AR +F+ M +RD  +W AMI  + + G   +AL LF +M+  G+  +  +M++VL  C  
Sbjct: 288 ARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCAS 347

Query: 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLF 417
           L +LD G+++H + + +  F +++++ + +I MY KCG +  A  +F +     K V ++
Sbjct: 348 LASLDHGRQVHARLVRS-EFDQDLYVASVLITMYVKCGDLVRAKGIFNRFL--FKDVVMW 404

Query: 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM-L 476
           NS+I+G +QHGLGE ++ VF +M   G++PD VTF+ VL ACS+ G V+EG + FE+M  
Sbjct: 405 NSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKC 464

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536
            Y ++P +EHY CMVDLL R GR+DEA  L++ MP + ++++W ALL ACR H    + E
Sbjct: 465 TYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAE 524

Query: 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTL 596
           +A +KL  LEP +   YVLLS+M A   RW +   +RK ++   I K PG S+IE    +
Sbjct: 525 VAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVEKKV 583

Query: 597 HRFL-ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           H F     KSHP+   I  ML+ ++  L+ AGY P+   V+ DVDEEEK   + YHSE+L
Sbjct: 584 HMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERL 643

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+A+GL+       IR+ KNLR+CGDCH A KL++++  REI++RDA RFH FK G+CSC
Sbjct: 644 AVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSC 703

Query: 716 MDFW 719
            DFW
Sbjct: 704 KDFW 707



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 181/413 (43%), Gaps = 58/413 (14%)

Query: 151 IHFYSIFGYINNAHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208
           I  Y   G I+NA KVF+ +    R + S+N +++ Y +  +P  AL LF +M     Q 
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP----QR 81

Query: 209 DAFTFVAMFSACTE---LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265
           +  +F  M S   +   + D R  K F  +  +N+       +  T+++  Y + G++  
Sbjct: 82  NTVSFNGMISGYVKNGMVADAR--KVFDVMPERNV-------VSWTSMVRGYVQEGMVEE 132

Query: 266 AERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGG 325
           AE++F  M   ++  +W+ MI G  +E +I+ A++LFD + ++D+V  T MI GY QVG 
Sbjct: 133 AEKLFWEMP-RRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGR 191

Query: 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385
             +A ELF +M+   +     T   ++      G +D  ++L +   E     RN    T
Sbjct: 192 LDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVARKLFEVMPE-----RNEVSWT 242

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNL-----------------------------KTVSL 416
           A++  Y + G +  A  +F  +P                                +    
Sbjct: 243 AMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGT 302

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N++I    + GL   ++ +F  M+  G+  +  + ++VL  C+    ++ G+Q    ++
Sbjct: 303 WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLV 362

Query: 477 NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH 529
                  +     ++ +  + G L  A G+     +  + V+W +++     H
Sbjct: 363 RSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLF-KDVVMWNSMITGYSQH 414



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 171/399 (42%), Gaps = 50/399 (12%)

Query: 54  CKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           C+ G L  +R LF ++   N+F W T++ GY+++     A  L+  M  +     N  ++
Sbjct: 187 CQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER-----NEVSW 241

Query: 113 PFVLNSCARLSSFKSGCQI-HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL 171
             +L    +    K   ++     +K+     +   N +I  + + G ++ A  +FEG  
Sbjct: 242 TAMLMGYTQSGRMKEAFELFEAMPVKW-----IVACNEMILQFGLAGEMHRARMMFEGMK 296

Query: 172 ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231
            RD  ++N +I  + +      AL LF +MQ   +  +  + +++ S C  L     G+Q
Sbjct: 297 ERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQ 356

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291
            HA + ++      ++ + + +I MY KCG +  A+ +F+   + K    W+SMI+GY++
Sbjct: 357 VHARLVRSE--FDQDLYVASVLITMYVKCGDLVRAKGIFNRF-LFKDVVMWNSMITGYSQ 413

Query: 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351
            G  E                               +AL +F  M S G+ PDEVT + V
Sbjct: 414 HGLGE-------------------------------EALNVFHDMCSSGVQPDEVTFIGV 442

Query: 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL 411
           L AC   G +  G  + +           I     ++D+  + G +D A+ +  K+P   
Sbjct: 443 LSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEP 502

Query: 412 KTVSLFNSIISGLAQH---GLGETSIAVFREMELMGLKP 447
             + ++ +++     H    L E ++    ++E     P
Sbjct: 503 DAI-VWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGP 540



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 17/272 (6%)

Query: 40  ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99
           ++ +++I  F L+G    + R+R++F  +   +   WN +++ + R     EAL L+  M
Sbjct: 270 VACNEMILQFGLAG---EMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM 326

Query: 100 LSKGIVSPNNFTFPF---VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSI 156
             +G+       FP    VL+ CA L+S   G Q+H  +++   + DL++ + LI  Y  
Sbjct: 327 QREGVA----LNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVK 382

Query: 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216
            G +  A  +F   L +D+V +N++I GY+Q      AL +F  M  S +QPD  TF+ +
Sbjct: 383 CGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGV 442

Query: 217 FSACTELNDPRIGKQFHAVVYKNLGC---VGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
            SAC+     + G +    +++ + C   V   +     ++++  + G ++ A  +   M
Sbjct: 443 LSACSYSGKVKEGFE----IFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKM 498

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
            M      W +++       K++ A    +++
Sbjct: 499 PMEPDAIVWGALLGACRNHMKLDLAEVAVEKL 530



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 24/264 (9%)

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKST-AAWSSMISGYTREGKIERARQLFDQMDQRD 309
           T+ I+ Y + G ++ A +VF    + + T A+W++M+S Y    K   A  LFDQM QR+
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369
            VS+  MISGY + G  + A ++F  M    +    V+  +++R  V  G ++  ++L  
Sbjct: 83  TVSFNGMISGYVKNGMVADARKVFDVMPERNV----VSWTSMVRGYVQEGMVEEAEKLFW 138

Query: 370 QYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
           +        RN+   T +I    K   ID A  +F  IP+  K V +  ++I G  Q G 
Sbjct: 139 EMPR-----RNVVSWTVMIGGLLKESRIDDAKKLFDMIPE--KDVVVVTNMIGGYCQVGR 191

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH--Y 487
            + +  +F EM++  +     T+ T++   +  G V+  ++ FE M      P+     +
Sbjct: 192 LDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVARKLFEVM------PERNEVSW 241

Query: 488 GCMVDLLARDGRLDEAYGLIQSMP 511
             M+    + GR+ EA+ L ++MP
Sbjct: 242 TAMLMGYTQSGRMKEAFELFEAMP 265


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 337/565 (59%), Gaps = 19/565 (3%)

Query: 158 GYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKM--QDSCIQPDAFTFVA 215
           G +  A ++F      D VSYNT+++ Y +      A   F  M  +D+   P   T + 
Sbjct: 21  GKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDT---PSWNTMIT 77

Query: 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275
            F+   +++  R    F  +  KN+       +   A+I+ Y +CG ++ A ++F     
Sbjct: 78  GFAQNQQMDKAR--DLFLIMPTKNV-------VTWNAMISGYVECGDLDSALKLFEKAPF 128

Query: 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGK 335
            KS  AW++MI+GY + G+I  A +LF++M +++LV+W AMI+GY +       ++LF  
Sbjct: 129 -KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRT 187

Query: 336 MESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395
           M   GI P+  T+ + L  C  L AL  G+++HQ   ++ +   +    T++I MY KCG
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCD-DTTAGTSLISMYCKCG 246

Query: 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455
            ++    +F ++P+  + V  +N++ISG AQHG G+ ++ +F EM   G+KPD +TFV V
Sbjct: 247 VLEDGWKLFVQVPR--RDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAV 304

Query: 456 LCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514
           L AC+H G  + G ++F SM  +YG+  + +HY CMVDLL R G+L EA  LI+ MP+  
Sbjct: 305 LMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKP 364

Query: 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRK 574
           ++ ++  LL ACR+H+N ++ E A QKLL+L+P     YV L+N+ A T RW+   +VRK
Sbjct: 365 HAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRK 424

Query: 575 LMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQ 634
            M    + K PG+S+IE     H+F +  K HP+   I   LK++  K+K AGYVP+   
Sbjct: 425 SMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEF 484

Query: 635 VVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYR 694
            + DV EE+KE ++ +HSEKLA+A+GLI       IR+ KNLR+CGDCH A K +S+I R
Sbjct: 485 ALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIER 544

Query: 695 REIMVRDAIRFHLFKKGNCSCMDFW 719
           REI+VRD  RFH FK G+CSC D+W
Sbjct: 545 REIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 186/422 (44%), Gaps = 63/422 (14%)

Query: 40  ISSSQLISFFALSGC---KNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
           I     +S+  +  C    + + R++  F  +   +   WNT++ G++++    +A  L+
Sbjct: 33  IPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLF 92

Query: 97  TSMLSKGIVSPNNFTFPFV----LNSCARL---SSFKSGCQIHCHIIKFGLEFDLFIRNA 149
             M +K +V+ N     +V    L+S  +L   + FKS                +    A
Sbjct: 93  LIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKS----------------VVAWTA 136

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           +I  Y   G I  A ++FE    ++LV++N +I GY +       + LFR M    IQP+
Sbjct: 137 MITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPN 196

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
           + T  +    C+EL+  ++G+Q H +V K+  C   +    T++I+MY KCG++    ++
Sbjct: 197 SSTLSSALLGCSELSALQLGRQVHQLVCKSPLC--DDTTAGTSLISMYCKCGVLEDGWKL 254

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  +   +    W++MISGY + G+ ++A  LFD+M ++                     
Sbjct: 255 FVQVP-RRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK--------------------- 292

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
                     G+ PD +T VAVL AC   G  D G +      ++          T ++D
Sbjct: 293 ----------GMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVD 342

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           +  + G +  A+ +  K+P      ++F +++     H    T +A F   +L+ L P  
Sbjct: 343 LLGRAGKLVEAVDLIEKMPFK-PHAAVFGTLLGACRIH--KNTEMAEFASQKLLNLDPAS 399

Query: 450 VT 451
            T
Sbjct: 400 AT 401



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 6/266 (2%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           LF ++   N+  WN ++ GY  +   ++ + L+ +M+  GI  PN+ T    L  C+ LS
Sbjct: 153 LFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGI-QPNSSTLSSALLGCSELS 211

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           + + G Q+H  + K  L  D     +LI  Y   G + +  K+F     RD+V++N +I+
Sbjct: 212 ALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMIS 271

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           GYAQ  E   AL LF +M +  ++PD  TFVA+  AC       +G ++   + K+ G V
Sbjct: 272 GYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLV 331

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
                  T ++++  + G +  A  +   M      A + +++       +I +  ++ +
Sbjct: 332 AKPDHY-TCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGAC----RIHKNTEMAE 386

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQA 329
              Q+ L    A  +GY Q+     A
Sbjct: 387 FASQKLLNLDPASATGYVQLANVYAA 412


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/605 (35%), Positives = 346/605 (57%), Gaps = 37/605 (6%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARD 174
           +L S  R  S + G Q+H HI+KFGL+    + + LI+ YS       + +VF+ +  + 
Sbjct: 31  LLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
             +++++I+ +AQ + P  AL  FR+M +  ++PD   + +   AC  L    +GK  H 
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
           +  K       ++ + +++++MYAKCG                                +
Sbjct: 151 LAVKT--GYYCDVFVGSSLVDMYAKCG--------------------------------E 176

Query: 295 IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
           I  AR LFD+M +R++VSW+ MI GY+Q+    +AL LF +     +  ++ T  +V+R 
Sbjct: 177 IGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRV 236

Query: 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
           C     L+ GK +H   ++ + F  + F+ +A+I +Y+KCG I+ A  VF +IP   + +
Sbjct: 237 CSSSTFLELGKLIHGLCLK-MSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT--RNL 293

Query: 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
            L+NS++   AQH   +    +F EM  +G+KP+ + F++VL ACSH GLVE+G+++F  
Sbjct: 294 GLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSL 353

Query: 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
           M +YGI+P+ EHY  +VDLL R G+L EA  +I+ MP      +W ALL  CR+H++ ++
Sbjct: 354 MRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEM 413

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
                 ++L+++      +VLLSN  A   R+EEA ++RK++ D G++K  G S++E   
Sbjct: 414 AAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGN 473

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEK 654
            +H F A  +SH +  EI   L+++  +++ AGYV +T  V+  VD EEK   + YHSE+
Sbjct: 474 KVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSER 533

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+AFGLI       IR+ KNLR+CGDCH A K +S+   R ++VRD  RFH F+ G CS
Sbjct: 534 LAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCS 593

Query: 715 CMDFW 719
           C D+W
Sbjct: 594 CGDYW 598



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 226/476 (47%), Gaps = 44/476 (9%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQI 68
           +LL      +SL+Q LQ+H  I+  GL    + S  LI+ +  S  +  LF  ++ F + 
Sbjct: 30  NLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLY--SKTQLPLFSLQV-FDET 86

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              +   W++++  ++++++P  AL  +  ML+ G V P++  +P    +C  L     G
Sbjct: 87  PKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDG-VRPDDHIYPSATKACGFLRRSDVG 145

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             +HC  +K G   D+F+ ++L+  Y+  G I +A  +F+    R++VS++ +I GYAQ+
Sbjct: 146 KSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQL 205

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   AL LF++     +  + FTF ++   C+      +GK  H +  K      S+  
Sbjct: 206 DDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM--SFDSSSF 263

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           + +A+I++Y+KCG++                                E A Q+FD++  R
Sbjct: 264 VGSALISLYSKCGVI--------------------------------EGAYQVFDEIPTR 291

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           +L  W +M+   +Q     +   LF +M ++G+ P+ +  ++VL AC   G ++ G R +
Sbjct: 292 NLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKG-REY 350

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              + +           +++D+  + G +  A+SV  ++P    T S++ ++++G   H 
Sbjct: 351 FSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMR-PTESVWGALLTGCRIH- 408

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLC-ACSHGGLVEEGKQFFESMLNYGIKPQ 483
             +T +A F    ++ +         +L  A +  G  EE  +  + + + G+K +
Sbjct: 409 -KDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKE 463


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/671 (34%), Positives = 370/671 (55%), Gaps = 36/671 (5%)

Query: 56  NGLFR-SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPF 114
           NGL R +R +F ++   NI  WN L+ GY ++   +EA  ++  M  + +VS       +
Sbjct: 61  NGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGY 120

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL---IHFYSIF--GYINNAHKVFEG 169
           V          + G  +   +    L + +  RN +   + F  +   G I++A K+++ 
Sbjct: 121 V----------QEGMVVEAEL----LFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDM 166

Query: 170 SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
              +D+V+   +I G  +      A  +F +M++     +  T+  M +   +     + 
Sbjct: 167 MPGKDVVASTNMIGGLCREGRVDEAREIFDEMRER----NVITWTTMITGYGQNKRVDVA 222

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           ++   V+ +      ++MLL       Y   G +  AE  F  M M K   A ++MI   
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLG------YTLSGRIEDAEEFFEVMPM-KPVIACNAMIVAL 275

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349
              G+I +AR++FDQM+ RD  +W  MI  Y + G   +ALELF +M+  G+ P   +++
Sbjct: 276 GEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLI 335

Query: 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409
           ++L  C  L +L +G+++H   +    F  ++++ + ++ MY KCG +  A  VF + P 
Sbjct: 336 SILSVCATLASLQYGRQVHAHLV-RCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPS 394

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469
             K + ++NSIISG A HGLGE ++ VF EM L G  P+ VT + +L ACS+GG +EEG 
Sbjct: 395 --KDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGL 452

Query: 470 QFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528
           + FESM + + + P +EHY C VD+L R G++D+A  LI SM    ++ +W ALL AC+ 
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKT 512

Query: 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWS 588
           H    + E+A +KL ++EP++   Y+LLS++ A   +W +  ++RK M    + K PG S
Sbjct: 513 HSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCS 572

Query: 589 YIEHNGTLHRFL-ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETV 647
           +IE    +H F     ++HP+   I +ML+     L+ AGY P+   V+ DVDEEEK   
Sbjct: 573 WIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDS 632

Query: 648 VSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707
           +S HSE+LA+A+GL+       IR+ KNLR+CGDCH A KL+S++  REI++RDA RFH 
Sbjct: 633 LSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHH 692

Query: 708 FKKGNCSCMDF 718
           F  G CSC D+
Sbjct: 693 FNNGECSCRDY 703



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 159/312 (50%), Gaps = 30/312 (9%)

Query: 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273
           ++  S   ++N+ R  K F ++ YK +G   S       +++ Y   GL   A ++F  M
Sbjct: 24  ISRLSRIGQINEAR--KFFDSLRYKAIGSWNS-------IVSGYFANGLPREARQMFDEM 74

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
              ++  +W+ ++SGY +   IE AR +F+ M +R++VSWTAM+ GY Q G   +A  LF
Sbjct: 75  P-ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLF 133

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393
            +M       +EV+   +    +  G +D  ++L+     +++ G+++  +T +I    +
Sbjct: 134 WRMP----ERNEVSWTVMFGGLIDGGRIDDARKLY-----DMMPGKDVVASTNMIGGLCR 184

Query: 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFV 453
            G +D A  +F ++ +  + V  + ++I+G  Q+   + +  +F   E+M  K + V++ 
Sbjct: 185 EGRVDEAREIFDEMRE--RNVITWTTMITGYGQNKRVDVARKLF---EVMPEKTE-VSWT 238

Query: 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513
           ++L   +  G +E+ ++FFE M    +KP +     M+  L   G + +A  +   M  D
Sbjct: 239 SMLLGYTLSGRIEDAEEFFEVM---PMKPVIA-CNAMIVALGEVGEIVKARRVFDQME-D 293

Query: 514 ANSVIWRALLAA 525
            ++  WR ++ A
Sbjct: 294 RDNATWRGMIKA 305


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 342/578 (59%), Gaps = 11/578 (1%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           S  LFS +   +   WN+++ G+++ D  +EAL  +  M     V  N+++F   L++C+
Sbjct: 109 SAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFV-LNDYSFGSGLSACS 167

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
           RL   K G QIH  I K     D+F+ + LI FYS  G +  A +VF+G   +++VS+N 
Sbjct: 168 RLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNC 227

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           LI  Y Q      AL  F +M +   +PD  T  ++ SAC  L   + G Q HA V K+ 
Sbjct: 228 LITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKS- 286

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
               ++++L  A+++MYAKCG +N A  VF  M + ++  + ++M+SGY +   ++ AR 
Sbjct: 287 DKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV-RNAVSETTMVSGYAKSASVKAARS 345

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +F  + Q+D+VSW A+I+GY+Q G   +AL LF  ++   + P   T   +L A   L  
Sbjct: 346 MFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLAD 405

Query: 361 LDFGKRLHQQYIENVVFGR-----NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415
           L+ G++ H   +++    +     +IF+  ++IDMY KCGS++  L VF  + +  K   
Sbjct: 406 LELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVE--KDHV 463

Query: 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475
            +N++I G AQ+G G  ++ +F++M   G KPD VT +  LCACSH GLVEEG+++F SM
Sbjct: 464 SWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSM 523

Query: 476 LN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534
              +G+ P  +HY CMVDLL R G L+EA  LI+SMP   ++V+W +LL+AC++HRN  +
Sbjct: 524 TKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITL 583

Query: 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNG 594
           G+   +K+ +++P     YVLL+NM +E  RW +A  VRKLM   G+ K PG S+I+   
Sbjct: 584 GKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQS 643

Query: 595 TLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNT 632
            +H F+   K HPQ KEI  +LK +T  ++ AGYVP+ 
Sbjct: 644 NVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPDA 681



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 219/479 (45%), Gaps = 103/479 (21%)

Query: 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE--- 168
           F  +L+ C +L S +    +H  +I+     ++FI+N LI  Y   GY++ A KVF+   
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 169 -----------GSLAR-----------------DLVSYNTLINGYAQVKEPCPAL-WLFR 199
                       +L R                 D  S+N++I G+AQ      AL W  R
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 200 KMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK 259
             +D  +  D ++F +  SAC+ L D ++G Q H ++ K+   +  ++ + + +I+ Y+K
Sbjct: 147 MHRDDFVLND-YSFGSGLSACSRLKDLKLGAQIHGLISKSKYSL--DVFMGSGLIDFYSK 203

Query: 260 CGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISG 319
           CGL+  A RVF  M   K+  +W+ +I                               + 
Sbjct: 204 CGLVGCARRVFDGM-EEKNVVSWNCLI-------------------------------TC 231

Query: 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379
           Y Q G   +ALE FG+M  LG  PDEVT+ +V+ AC  L A   G ++H + +++  F  
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIP-KNL--------------------------- 411
           ++ L  A++DMYAKCG ++ A  VF ++P +N                            
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 412 -KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470
            K +  +N++I+G  Q+G  E ++ +FR ++   + P   TF  +L A ++   +E G+Q
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 471 FFESMLNYGIK------PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
               ++ +G +      P +     ++D+  + G ++E   + ++M  + + V W  ++
Sbjct: 412 AHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENM-VEKDHVSWNTMI 469



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 207/471 (43%), Gaps = 91/471 (19%)

Query: 4   LVLEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFA---LSGCKN 56
            VL   S  + L +C   K LK   QIHG I  S  +  +   S LI F++   L GC  
Sbjct: 152 FVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGC-- 209

Query: 57  GLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116
               +R +F  ++  N+  WN L+  Y ++    EAL  +  M   G   P+  T   V+
Sbjct: 210 ----ARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGF-KPDEVTLASVV 264

Query: 117 NSCARLSSFKSGCQIHCHIIKFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-- 173
           ++CA L++FK G QIH  ++K      DL + NAL+  Y+  G +N A  VF+    R  
Sbjct: 265 SACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNA 324

Query: 174 -----------------------------DLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204
                                        D+VS+N LI GY Q  E   AL LFR ++  
Sbjct: 325 VSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRE 384

Query: 205 CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS----NMLLKTAVINMYAKC 260
            + P  +TF  + +A   L D  +G+Q H+ V K+     S    ++ +  ++I+MY KC
Sbjct: 385 SVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKC 444

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGY 320
           G +    RVF  M + K   +W++MI GY +                          +GY
Sbjct: 445 GSVEEGLRVFENM-VEKDHVSWNTMIIGYAQ--------------------------NGY 477

Query: 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN 380
                  +ALELF KM   G  PD VTM+  L AC   G ++ G+R    Y  ++     
Sbjct: 478 GM-----EALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRR----YFFSMTKEHG 528

Query: 381 IFLT----TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427
           +       T ++D+  + G ++ A  +   +PK    V +++S++S    H
Sbjct: 529 LLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAV-VWSSLLSACKVH 578



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268
           D+  F  +   C +L   R  +  H  + +   C    + ++  +I++Y KCG ++ A +
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFC--EEVFIQNRLIDVYGKCGYLDYARK 80

Query: 269 VFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328
           VF  M   ++  +++S+IS   R G ++ +  LF  M ++D  SW +MI+G++Q   F +
Sbjct: 81  VFDRMS-ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
           AL+ F +M       ++ +  + L AC  L  L  G ++H   I    +  ++F+ + +I
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIH-GLISKSKYSLDVFMGSGLI 198

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           D Y+KCG +  A  VF  + +  K V  +N +I+   Q+G    ++  F  M  +G KPD
Sbjct: 199 DFYSKCGLVGCARRVFDGMEE--KNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPD 256

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            VT  +V+ AC+     +EG Q    ++     +  +     +VD+ A+ GR++EA  + 
Sbjct: 257 EVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVF 316

Query: 508 QSMP 511
             MP
Sbjct: 317 DRMP 320



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 176/374 (47%), Gaps = 44/374 (11%)

Query: 10  SLLALLESCKSL---KQALQIHGQIVHSG--LNHHISSSQLISFFALSGCKN-------- 56
           +L +++ +C +L   K+ +QIH ++V S    N  I  + L+  +A  G  N        
Sbjct: 259 TLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDR 318

Query: 57  --------------GLFRS------RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLY 96
                         G  +S      R +F+ I   +I  WN L+ GY+++   +EAL L+
Sbjct: 319 MPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378

Query: 97  TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF------DLFIRNAL 150
             ML +  V P ++TF  +LN+ A L+  + G Q H H++K G  F      D+F+ N+L
Sbjct: 379 -RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSL 437

Query: 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           I  Y   G +    +VFE  + +D VS+NT+I GYAQ      AL LF+KM +S  +PD 
Sbjct: 438 IDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDH 497

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T +    AC+       G+++   + K  G +       T ++++  + G +  A+ + 
Sbjct: 498 VTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHY-TCMVDLLGRAGCLEEAKDLI 556

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS---WTAMISGYSQVGGFS 327
            +M        WSS++S       I   + + +++ + D  S   +  + + YS++G + 
Sbjct: 557 ESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWG 616

Query: 328 QALELFGKMESLGI 341
            A+ +   M   G+
Sbjct: 617 DAVSVRKLMRRRGV 630


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 253/695 (36%), Positives = 377/695 (54%), Gaps = 47/695 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNGLFRSRILFSQ 67
           +SL +LL   ++ K A QIH Q++ + L +     + L++ +A  G  +   ++ +LFS 
Sbjct: 31  TSLNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVD---QTLLLFSS 87

Query: 68  I--DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
              D+ N+  W +L+   +R   P +AL  +  M   G V PN++TF  VL++C   ++ 
Sbjct: 88  APDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSG-VYPNHYTFSAVLSACTDTTAS 146

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G Q+H  + K G   ++F+ +AL+  Y+    +  A KVFE    R+LVS+NT+I G+
Sbjct: 147 VHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGF 206

Query: 186 AQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVG 244
            Q K    A++ F+ +  ++    D  +F ++FSAC    +   GKQ H V  K LG V 
Sbjct: 207 LQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALK-LG-VW 264

Query: 245 SNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ 304
           + + +  ++ +MY KCGL N   ++FS  G                              
Sbjct: 265 NLVYINNSLSDMYGKCGLFNDVAKLFSNTGA----------------------------- 295

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
              RD+V+W  MI  Y     +  A   F  M   G  PDE +  +VL +C  L AL  G
Sbjct: 296 ---RDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQG 352

Query: 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL 424
             +H Q I +  F +N+ + +++I MYAKCGS+  A  +F +     + V  + +II+  
Sbjct: 353 TLIHNQIIRSG-FVKNLRVASSLITMYAKCGSLVDAFQIFEETED--RNVVCWTAIIAAC 409

Query: 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQ 483
            QHG     + +F +M   G+KPD +TFV+VL ACSH G VEEG  +F SM+  +GI P 
Sbjct: 410 QQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPG 469

Query: 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543
            EHY C+VDLL+R G LD A   I+ MP   ++ +W ALL+ACR H N  +G+    KL 
Sbjct: 470 HEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLF 529

Query: 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASK 603
           DLEPD+  +YVLL N+L       EA +VR+ M+  G++K PG S+I+   + + F    
Sbjct: 530 DLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHD 589

Query: 604 KSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLIN 663
           KSH +TKEI  ML+ +   +K  GYV  T +   +  EE KE  + YHSEK+ALAFGL++
Sbjct: 590 KSHEKTKEIYEMLEKLKELVKKKGYVAET-EFAINTAEEYKEQSLWYHSEKIALAFGLLS 648

Query: 664 SRSKETIRITKNLRICGDCHLAFKLLSEIYRREIM 698
             +   IRI KNLR CGDCH   K  SEI+ REI+
Sbjct: 649 LPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREII 683



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 229/490 (46%), Gaps = 63/490 (12%)

Query: 8   HSSLLALLESCKSLKQALQIHGQIVHSGLNHH------ISSSQLISFFALSGCKNGLFRS 61
           H +  A+L +C     +  +HG+ +HS +  H         S L+  +A   C + L   
Sbjct: 130 HYTFSAVLSACTDTTAS--VHGEQMHSLVWKHGFLAEVFVVSALVDMYA--KCCDMLMAE 185

Query: 62  RILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121
           ++ F ++   N+  WNT++ G+ ++    +A+  + ++L + + + +  +F  V ++CA 
Sbjct: 186 KV-FEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACAN 244

Query: 122 LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181
             + + G Q+H   +K G+   ++I N+L   Y   G  N+  K+F  + ARD+V++N +
Sbjct: 245 AGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIM 304

Query: 182 INGYA---QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238
           I  Y      ++ C + W+ R+       PD  ++ ++  +C  L     G   H  + +
Sbjct: 305 IMAYVYNHNYEDACNSFWMMRRKGSI---PDEASYSSVLHSCANLAALYQGTLIHNQIIR 361

Query: 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERA 298
           + G V  N+ + +++I MYAKCG                      S++  +         
Sbjct: 362 S-GFV-KNLRVASSLITMYAKCG----------------------SLVDAF--------- 388

Query: 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358
            Q+F++ + R++V WTA+I+   Q G  +  +ELF +M   GI PD +T V+VL AC   
Sbjct: 389 -QIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHT 447

Query: 359 GALDFGKRLHQQYIE--NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
           G ++ G       I+   +  G   +    ++D+ ++ G +D A      +P      S+
Sbjct: 448 GRVEEGFFYFNSMIKVHGIYPGHEHY--ACIVDLLSRAGELDRAKRFIELMPIK-PDASV 504

Query: 417 FNSIISGLAQHGLGETSIAVFRE--MELMGLKPDGVTFVTVLCAC-SHGGLVEEGKQFFE 473
           + +++S    H    +++ + +E  ++L  L+PD      +LC   +  G++ E  +   
Sbjct: 505 WGALLSACRNH----SNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRR 560

Query: 474 SMLNYGIKPQ 483
            M + G++ +
Sbjct: 561 KMESIGVRKE 570


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/668 (35%), Positives = 375/668 (56%), Gaps = 42/668 (6%)

Query: 56   NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
            N +  +R +F  + + +   WN+++ G   ++  +EA+  + +M   G+V P+ F+    
Sbjct: 404  NAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMV-PSKFSVIST 462

Query: 116  LNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175
            L+SCA L     G QIH   IK GL+ D+ + NAL+  Y+    +    KVF      D 
Sbjct: 463  LSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQ 522

Query: 176  VSYNTLINGYAQVKEPC-PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234
            VS+N+ I   A  +     A+  F +M  +  +P+  TF+ + SA + L+   +G+Q HA
Sbjct: 523  VSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHA 582

Query: 235  VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGK 294
            ++ K+   V  +  ++  ++  Y KC  M   E +FS M                     
Sbjct: 583  LILKH--SVADDNAIENTLLAFYGKCEQMEDCEIIFSRMS-------------------- 620

Query: 295  IERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354
                       ++RD VSW AMISGY   G   +A+ L   M   G   D+ T+  VL A
Sbjct: 621  -----------ERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSA 669

Query: 355  CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTV 414
            C  +  L+ G  +H   I        + + +A++DMYAKCG ID A   F  +P  ++ +
Sbjct: 670  CASVATLERGMEVHACAIR-ACLEAEVVVGSALVDMYAKCGKIDYASRFFELMP--VRNI 726

Query: 415  SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474
              +NS+ISG A+HG G  ++ +F +M+  G  PD VTFV VL ACSH GLV+EG + F+S
Sbjct: 727  YSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKS 786

Query: 475  MLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC-RLH-RN 531
            M   Y + P++EH+ CMVDLL R G + +    I++MP + N++IWR +L AC R + RN
Sbjct: 787  MGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRN 846

Query: 532  AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIE 591
             ++G  A + L++LEP +  +YVLLSNM A   +WE+  + R  M ++ ++K  G S++ 
Sbjct: 847  TELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVT 906

Query: 592  HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYH 651
                +H F+A  ++HP+ ++I   LK++  K++  GYVP T   ++D++ E KE ++SYH
Sbjct: 907  MKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYH 966

Query: 652  SEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKG 711
            SEKLA+AF ++  +S+  IRI KNLR+CGDCH AFK +S I  R+I++RD+ RFH F  G
Sbjct: 967  SEKLAIAF-VLTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGG 1025

Query: 712  NCSCMDFW 719
             CSC D+W
Sbjct: 1026 ICSCQDYW 1033



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 248/525 (47%), Gaps = 59/525 (11%)

Query: 16  ESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF 74
           +SC +++ A Q+H QI  +GL   +   + L++ F  +G    L  ++ LF ++   N+ 
Sbjct: 51  DSC-TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAG---NLVSAQKLFDEMPQKNLV 106

Query: 75  IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS--FKSGCQIH 132
            W+ L+ GY+++  P EA +L+  ++S G++ PN++     L +C  L     K G +IH
Sbjct: 107 SWSCLVSGYAQNGMPDEACMLFRGIISAGLL-PNHYAIGSALRACQELGPNMLKLGMEIH 165

Query: 133 CHIIKFGLEFDLFIRNALIHFYS-IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEP 191
             I K     D+ + N L+  YS     I++A +VFE    +   S+N++I+ Y +  + 
Sbjct: 166 GLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDA 225

Query: 192 CPALWLFRKMQDSCIQ----PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247
             A  LF  MQ    +    P+ +TF ++ +    L D                      
Sbjct: 226 ISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVD---------------------- 263

Query: 248 LLKTAVINMYAKCGLMNMAERVFSTMGMS---KSTAAWSSMISGYTREGKIERARQLFDQ 304
                       CGL  + E++ + +  S   K     S+++SG+ R G I+ A+ +F+Q
Sbjct: 264 ------------CGL-TLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQ 310

Query: 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364
           MD R+ V+   ++ G ++     +A ++F +M+ L +  +  +   +L A      L  G
Sbjct: 311 MDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKEG 369

Query: 365 KR----LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           KR    +H   I N +    I +  A++++YAKC +ID A S+F  +P    TVS +NSI
Sbjct: 370 KRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSK-DTVS-WNSI 427

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480
           ISGL  +   E ++A F  M   G+ P   + ++ L +C+  G +  G+Q     +  G+
Sbjct: 428 ISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGL 487

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
              +     ++ L A    ++E   +   MP + + V W + + A
Sbjct: 488 DLDVSVSNALLTLYAETDCMEEYQKVFFLMP-EYDQVSWNSFIGA 531



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 133/538 (24%), Positives = 253/538 (47%), Gaps = 55/538 (10%)

Query: 4   LVLEHSSLLALLESCKSL-----KQALQIHGQIVHSGL-NHHISSSQLISFFALSGCKNG 57
           L+  H ++ + L +C+ L     K  ++IHG I  S   +  + S+ L+S +  S C   
Sbjct: 136 LLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMY--SHCSAS 193

Query: 58  LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGI---VSPNNFTF-P 113
           +  +R +F +I       WN+++  Y R      A  L++SM  +       PN +TF  
Sbjct: 194 IDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCS 253

Query: 114 FVLNSCARLSSFKSGC-QIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
            V  +C+ +    +   Q+   I K     DL++ +AL+  ++ +G I++A  +FE    
Sbjct: 254 LVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDD 313

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND----PRI 228
           R+ V+ N L+ G A+  +   A  +F++M+D  ++ +A ++  + SA TE ++     R 
Sbjct: 314 RNAVTMNGLMVGLARQHQGEEAAKIFKEMKD-LVEINASSYAVLLSAFTEFSNLKEGKRK 372

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
           G++ HA + +N   V   +L+  A++N+YAKC                            
Sbjct: 373 GQEVHAYLIRN-ALVDVWILIGNALVNLYAKCN--------------------------- 404

Query: 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348
                 I+ AR +F  M  +D VSW ++ISG      F +A+  F  M   G+ P + ++
Sbjct: 405 -----AIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSV 459

Query: 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408
           ++ L +C  LG +  G+++H + I+      ++ ++ A++ +YA+   ++    VF+ +P
Sbjct: 460 ISTLSSCASLGWIMLGQQIHGEGIK-CGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP 518

Query: 409 KNLKTVSLFNSIISGLAQHGLGE-TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467
           +    VS +NS I  LA        +I  F EM   G KP+ VTF+ +L A S   L+E 
Sbjct: 519 E-YDQVS-WNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLEL 576

Query: 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAA 525
           G+Q    +L + +         ++    +  ++++   +   M    + V W A+++ 
Sbjct: 577 GRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISG 634



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 21/311 (6%)

Query: 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333
           G++      +++++ + R G +  A++LFD+M Q++LVSW+ ++SGY+Q G   +A  LF
Sbjct: 69  GLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLF 128

Query: 334 GKMESLGIHPDEVTMVAVLRACVGLGA--LDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391
             + S G+ P+   + + LRAC  LG   L  G  +H   I    +  ++ L+  ++ MY
Sbjct: 129 RGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIH-GLISKSPYASDMVLSNVLMSMY 187

Query: 392 AKC-GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF----REMELMGLK 446
           + C  SID A  VF +I   +KT + +NSIIS   + G   ++  +F    RE   +  +
Sbjct: 188 SHCSASIDDARRVFEEI--KMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCR 245

Query: 447 PDGVTFVT-VLCACSHGGLVEEGKQFFESMLNYGIKPQM--EHY--GCMVDLLARDGRLD 501
           P+  TF + V  ACS   LV+ G    E ML    K     + Y    +V   AR G +D
Sbjct: 246 PNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLID 302

Query: 502 EAYGLIQSMPYDANSVIWRALLAA-CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560
            A  + + M  D N+V    L+    R H+  +  +I  +++ DL   + + Y +L +  
Sbjct: 303 SAKMIFEQMD-DRNAVTMNGLMVGLARQHQGEEAAKIF-KEMKDLVEINASSYAVLLSAF 360

Query: 561 AETYRWEEARQ 571
            E    +E ++
Sbjct: 361 TEFSNLKEGKR 371



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 157/316 (49%), Gaps = 19/316 (6%)

Query: 26  QIHGQIV-HSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI-DNPNIFIWNTLMRGY 83
           QIH  I+ HS  + +   + L++F+   G    +    I+FS++ +  +   WN ++ GY
Sbjct: 579 QIHALILKHSVADDNAIENTLLAFY---GKCEQMEDCEIIFSRMSERRDEVSWNAMISGY 635

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
             +    +A+ L   M+ KG    ++FT   VL++CA +++ + G ++H   I+  LE +
Sbjct: 636 IHNGILHKAMGLVWLMMQKG-QRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAE 694

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203
           + + +AL+  Y+  G I+ A + FE    R++ S+N++I+GYA+      AL LF +M+ 
Sbjct: 695 VVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQ 754

Query: 204 SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV---GSNMLLKTAVINMYAKC 260
               PD  TFV + SAC+ +     G +     +K++G V      +   + ++++  + 
Sbjct: 755 HGQLPDHVTFVGVLSACSHVGLVDEGFEH----FKSMGEVYELAPRIEHFSCMVDLLGRA 810

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI-----ERARQLFDQMDQRDLVSWTA 315
           G +   E    TM M+ +   W +++    R          RA ++  +++  + V++  
Sbjct: 811 GDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYV- 869

Query: 316 MISGYSQVGGFSQALE 331
           ++S     GG  + +E
Sbjct: 870 LLSNMHAAGGKWEDVE 885


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/694 (34%), Positives = 371/694 (53%), Gaps = 45/694 (6%)

Query: 27  IHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRS 86
           +H ++V +     +  + LI+ +   G + GL  +R +F  + + N    N LM GY+ S
Sbjct: 38  VHARVVRAARFDVVQYNNLIALYVKCG-RLGL--ARQVFDAMPSRNPVSGNLLMSGYASS 94

Query: 87  DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFI 146
              ++AL L    L       N +     + + A + S+  G Q H + IK GL    ++
Sbjct: 95  GRHRDALAL----LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYV 150

Query: 147 RNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206
            +A++H Y    +++ A KVF+   + ++ ++N++ING+    +   +  + R M  +  
Sbjct: 151 CSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVG 210

Query: 207 QPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMA 266
           Q D  ++VA+   C    +  +G Q H    K    +  N+ + +A+++MY KC   + A
Sbjct: 211 QWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRR--LELNVYVGSALVDMYGKCDFPHEA 268

Query: 267 ERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF 326
            RVF  +                                 ++++VSWTA+++ Y+Q   F
Sbjct: 269 NRVFEVL--------------------------------PEKNIVSWTAIMTAYTQNELF 296

Query: 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386
             AL+LF  ME  G+ P+E T    L +C GL  L  G  L    ++   +G  + +  A
Sbjct: 297 EDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGL-LPVCNA 355

Query: 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446
           +++MY+K GS++ A  VF  +P   + V  +NSII G A HG    ++  F +M      
Sbjct: 356 LMNMYSKSGSVEDARRVFLSMP--CRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV 413

Query: 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYG 505
           P  VTF+ VL AC+  GLV+EG  +   M+   G+KP  EHY CMV LL R GRLDEA  
Sbjct: 414 PSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAER 473

Query: 506 LIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565
            I+S     + V WR+LL++C+++RN  +G    +++  L+P     YVLLSNM A+  R
Sbjct: 474 FIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANR 533

Query: 566 WEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625
           W+   +VR+LM + G++K PG S+I+    +H F +  K HP  ++I   L+++  K+K 
Sbjct: 534 WDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKV 593

Query: 626 AGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLA 685
            GYVPN    + DV++E+KE  + YHSEKLALAFGLI +   E IRI KN+RIC DCH+A
Sbjct: 594 IGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVA 653

Query: 686 FKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            KL+S    R I+VRD +RFH  + G CSC D+W
Sbjct: 654 IKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 165/345 (47%), Gaps = 12/345 (3%)

Query: 7   EHSSLLALLESCKSLKQAL---QIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSR 62
           +H S +A+L  C S K+ +   Q+H Q +   L  ++   S L+  +      +   R  
Sbjct: 213 DHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANR-- 270

Query: 63  ILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL 122
            +F  +   NI  W  +M  Y++++  ++AL L+  M  +G V PN FT+   LNSCA L
Sbjct: 271 -VFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEG-VRPNEFTYAVALNSCAGL 328

Query: 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI 182
           ++ K+G  +    +K G    L + NAL++ YS  G + +A +VF     RD+VS+N++I
Sbjct: 329 ATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSII 388

Query: 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
            GYA       A+  F  M  +   P   TF+ + SAC +L     G  +  ++ K +G 
Sbjct: 389 IGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVG- 447

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG---YTREGKIERAR 299
           V       T ++ +  + G ++ AER   +  +     AW S++S    Y   G   R  
Sbjct: 448 VKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVA 507

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD 344
           +   Q+  +D+ ++  + + Y++   +   +++   M  LG+  +
Sbjct: 508 EQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKE 552



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 210/460 (45%), Gaps = 29/460 (6%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHH--ISSSQLISFFALSGCKNGLFRSRI-LF 65
           SS +A     +S     Q HG  + +GL  H  + S+ L  +     C+       + +F
Sbjct: 117 SSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMY-----CQCAHMDEAVKVF 171

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
             + + N+F +N+++ G+        +  +  SM+ + +   ++ ++  VL  CA     
Sbjct: 172 DNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMV-RNVGQWDHVSYVAVLGHCASTKEV 230

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
             G Q+H   +K  LE ++++ +AL+  Y    + + A++VFE    +++VS+  ++  Y
Sbjct: 231 VLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAY 290

Query: 186 AQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245
            Q +    AL LF  M+   ++P+ FT+    ++C  L   + G    A   K     G 
Sbjct: 291 TQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKT----GH 346

Query: 246 NMLLKT--AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
             LL    A++NMY+K G +  A RVF +M   +   +W+S+I GY   G+   A + F 
Sbjct: 347 WGLLPVCNALMNMYSKSGSVEDARRVFLSMP-CRDVVSWNSIIIGYAHHGRAREAMEAFH 405

Query: 304 QM----DQRDLVSWTAMISGYSQVGGFSQALELFG-KMESLGIHPDEVTMVAVLRACVGL 358
            M    +    V++  ++S  +Q+G   +        M+ +G+ P +     ++     +
Sbjct: 406 DMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRV 465

Query: 359 GALDFGKRLHQQYI--ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
           G LD  +R  +      +VV  R++  +  V   Y     +  A  +F   PK++ T  L
Sbjct: 466 GRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRV--AEQIFQLKPKDVGTYVL 523

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTV 455
            +++    A+    +  + V R M  +G++ + GV+++ V
Sbjct: 524 LSNM---YAKANRWDGVVKVRRLMRELGVRKEPGVSWIQV 560


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/602 (36%), Positives = 358/602 (59%), Gaps = 15/602 (2%)

Query: 6   LEHSSLLALLESCKSLKQALQIHGQIVHSGLNHHISS-SQLISFFALSGCKNGLFRSRIL 64
           L   + ++LL+SCKS+ Q  QI   I   GL     + ++L++F   S   +  + +RI 
Sbjct: 6   LMKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRI- 64

Query: 65  FSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS 124
           F+ I +P++FI+N +++ + +S S + A+ L+  +   G V P+N+T+P+VL     +  
Sbjct: 65  FNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHG-VWPDNYTYPYVLKGIGCIGE 123

Query: 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLING 184
            + G ++H  ++K GLEFD ++ N+ +  Y+  G +    +VFE    RD VS+N +I+G
Sbjct: 124 VREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISG 183

Query: 185 YAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           Y + K    A+ ++R+M  +S  +P+  T V+  SAC  L +  +GK+ H  +   L   
Sbjct: 184 YVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLT 243

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303
               ++  A+++MY KCG +++A  +F  M + K+   W+SM++GY   G++++AR LF+
Sbjct: 244 ---TIMGNALLDMYCKCGHVSVAREIFDAMTV-KNVNCWTSMVTGYVICGQLDQARNLFE 299

Query: 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363
           +   RD+V WTAMI+GY Q   F + + LFG+M+  G+ PD+  +V +L  C   GAL+ 
Sbjct: 300 RSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQ 359

Query: 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG 423
           GK +H  YI+      +  + TA+I+MYAKCG I+ +  +F  + +  K  + + SII G
Sbjct: 360 GKWIH-NYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKE--KDTTSWTSIICG 416

Query: 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKP 482
           LA +G    ++ +F+ M+  GLKPD +TFV VL ACSH GLVEEG++ F SM + Y I+P
Sbjct: 417 LAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEP 476

Query: 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVI---WRALLAACRLHRNAKIGEIAG 539
            +EHYGC +DLL R G L EA  L++ +P   N +I   + ALL+ACR + N  +GE   
Sbjct: 477 NLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLA 536

Query: 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRF 599
             L  ++    + + LL+++ A   RWE+ R+VR  M D GI+K PG+S IE +G   + 
Sbjct: 537 TALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQQR 596

Query: 600 LA 601
           L+
Sbjct: 597 LS 598


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/720 (32%), Positives = 377/720 (52%), Gaps = 74/720 (10%)

Query: 64  LFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS 123
           +F+++   ++F WN ++ GY ++   +EAL LY  ML  G   P+ +TFP VL SC  + 
Sbjct: 151 VFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG-ARPDVYTFPCVLRSCGGVP 209

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
               G ++H H+++FGL  ++ + NAL+  Y+  G +  A KVF+G    D +S+N +I 
Sbjct: 210 DLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIA 269

Query: 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV-------- 235
           G+ +  E    L LF  M +  ++P+  T  ++  A   L+D    K+ HA+        
Sbjct: 270 GHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFAT 329

Query: 236 ----------VYKNLGCVGS-----------NMLLKTAVINMYAKCGLMNMAERVFSTM- 273
                     +Y +LG +G            + +  TA+I+ Y K G  + A  V++ M 
Sbjct: 330 DVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALME 389

Query: 274 -------------------------------------GMSKSTAAWSSMISGYTREGKIE 296
                                                G  +     ++++  Y +   IE
Sbjct: 390 VNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIE 449

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
           +A ++F  M  +D++SW++MI+G+       +AL  F  M +  + P+ VT +A L AC 
Sbjct: 450 KAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLA-DVKPNSVTFIAALAACA 508

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             G+L  GK +H   +   +     ++  A++D+Y KCG    A + F       K V  
Sbjct: 509 ATGSLRCGKEIHAHVLRQGIASEG-YVPNALLDLYVKCGQTGYAWAQFGA--HGTKDVVS 565

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           +N +++G   HG G+ +++ F EM   G  PD VTFV +LC CS  G+V +G + F SM 
Sbjct: 566 WNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMT 625

Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
             Y I P ++HY CMVDLL+R GRL E Y  I  MP   ++ +W ALL  CR+HRN ++G
Sbjct: 626 EKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELG 685

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           E+A + +L+LEP+   ++VLLS++ A+   W E  +VRK M   G++   G S++E  G 
Sbjct: 686 ELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGA 745

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKL 655
           +H FL   +SHPQ KEI  +L  +  ++K++G+ P     + D  E  K+ V+  HSE+L
Sbjct: 746 IHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLED-KEVSKDDVLCGHSERL 804

Query: 656 ALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSC 715
           A+AFGLIN+    +I +TKN   C  CH   +++S+I RREI VRD   FH F+ G+CSC
Sbjct: 805 AVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKEFHHFRDGSCSC 864



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 211/460 (45%), Gaps = 43/460 (9%)

Query: 90  QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA 149
           Q+AL L    L      P+   +  + + C    + + G +   H       F L + NA
Sbjct: 79  QQALWL----LESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRLGNA 134

Query: 150 LIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209
           ++     FG   +A KVF     RD+ S+N ++ GY +      AL L+ +M  +  +PD
Sbjct: 135 MLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPD 194

Query: 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269
            +TF  +  +C  + D  +G++ HA V +  G +G  + +  A++ MYAKCG +  A +V
Sbjct: 195 VYTFPCVLRSCGGVPDLTMGREVHAHVLR-FG-LGVEVDVLNALVTMYAKCGDVEAARKV 252

Query: 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329
           F  M ++    +W++MI+G+    + E                                 
Sbjct: 253 FDGMSLTDCI-SWNAMIAGHFENHECE-------------------------------AG 280

Query: 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           LELF  M    + P+ +T+ +V  A   L  LDF K +H   ++   F  ++    ++I 
Sbjct: 281 LELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKR-GFATDVAFCNSLIQ 339

Query: 390 MYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449
           MY+  G +  A +VF ++    +    + ++ISG  ++G  + ++ V+  ME+  + PD 
Sbjct: 340 MYSSLGRMGEACTVFSRM--ETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDD 397

Query: 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509
           VT  + L AC+  G ++ G +  E   + G    +     +V++ A+   +++A  + + 
Sbjct: 398 VTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKY 457

Query: 510 MPYDANSVIWRALLAA-CRLHRNAKIGEIAGQKLLDLEPD 548
           MP D + + W +++A  C  H+N +        L D++P+
Sbjct: 458 MP-DKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKPN 496


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/619 (36%), Positives = 372/619 (60%), Gaps = 19/619 (3%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEF--DLFIRNALIHFYSIFGYINNAHKVF-EGS 170
            +L  CA  S  + G ++H  +   GL+     ++ NAL  FY+  G +  A K+F E  
Sbjct: 11  LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP 70

Query: 171 LA-RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229
           L+ +D V + TL++ +++      ++ LF +M+   ++ D  + V +F  C +L D    
Sbjct: 71  LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFA 130

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
           +Q H V  K +G V +++ +  A+++MY KCGL++  +R+F  +   KS  +W+ ++   
Sbjct: 131 QQGHGVAVK-MG-VLTSVKVCNALMDMYGKCGLVSEVKRIFEELE-EKSVVSWTVVLDTV 187

Query: 290 TREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME-SLGIHPDEVTM 348
            +   +ER R++F +M +R+ V+WT M++GY   G   + LEL  +M    G   + VT+
Sbjct: 188 VKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTL 247

Query: 349 VAVLRACVGLGALDFGKRLHQQYIEN-VVFGR-----NIFLTTAVIDMYAKCGSIDTALS 402
            ++L AC   G L  G+ +H   ++  ++ G      ++ + TA++DMYAKCG+ID++++
Sbjct: 248 CSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMN 307

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  + K  + V  +N++ SGLA HG G   I +F +M +  +KPD +TF  VL ACSH 
Sbjct: 308 VFRLMRK--RNVVTWNALFSGLAMHGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSHS 364

Query: 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL 522
           G+V+EG + F S+  YG++P+++HY CMVDLL R G ++EA  L++ MP   N V+  +L
Sbjct: 365 GIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSL 424

Query: 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582
           L +C +H   +I E   ++L+ + P +  + +L+SNM     R + A  +R  +   GI+
Sbjct: 425 LGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIR 484

Query: 583 KPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVV--FDVD 640
           K PG S I  N ++HRF +  +SHP+TKEI L L ++  +++SAGYVP+   +V   + D
Sbjct: 485 KIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGD 544

Query: 641 EEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVR 700
            EEKE  +  HSEKLA+ FGL+ ++    + + KNLRIC DCH A K++S++Y REI++R
Sbjct: 545 LEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIR 604

Query: 701 DAIRFHLFKKGNCSCMDFW 719
           D  RFH FK G+CSC D+W
Sbjct: 605 DRNRFHQFKGGSCSCSDYW 623



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 121/260 (46%), Gaps = 12/260 (4%)

Query: 56  NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115
            GL R R +F ++   N   W  ++ GY  +   +E L L   M+ +     N  T   +
Sbjct: 191 EGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSM 250

Query: 116 LNSCARLSSFKSGCQIHCHIIK----FGLEF---DLFIRNALIHFYSIFGYINNAHKVFE 168
           L++CA+  +   G  +H + +K     G E    D+ +  AL+  Y+  G I+++  VF 
Sbjct: 251 LSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFR 310

Query: 169 GSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
               R++V++N L +G A   +    + +F +M    ++PD  TF A+ SAC+       
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDE 369

Query: 229 G-KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMIS 287
           G + FH++ +  L      +     ++++  + GL+  AE +   M +  +     S++ 
Sbjct: 370 GWRCFHSLRFYGL---EPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLG 426

Query: 288 GYTREGKIERARQLFDQMDQ 307
             +  GK+E A ++  ++ Q
Sbjct: 427 SCSVHGKVEIAERIKRELIQ 446


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/599 (36%), Positives = 352/599 (58%), Gaps = 9/599 (1%)

Query: 124 SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLIN 183
           S +S  + H  +IK GL         L+  Y+    + +   +F+ +  RDL  Y++L+ 
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLA 77

Query: 184 GYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGC 242
             +  + P   L L R+M  +  ++PD F   ++ SA   L    +GKQ H     +   
Sbjct: 78  AVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVAS--P 135

Query: 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF 302
             S+ ++K+++I+MY KCG+ + A +VF ++ ++K++  W+++ISGY   G+ + A +LF
Sbjct: 136 YSSDDVVKSSLIDMYCKCGVPDDARKVFDSI-VAKNSVMWTALISGYVLNGRSDEALELF 194

Query: 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV-TMVAVLRACVGLGAL 361
             M  R L +WTA+ISG+ + G    A++LF  M   G+  D+   + + +     L A 
Sbjct: 195 RSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAH 254

Query: 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421
             G++LH   +  + F  ++ +  AV+DMY+KC  I +A  VF +I    + +  + +++
Sbjct: 255 VLGRQLHSLTM-RLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITG--RDIISWTTML 311

Query: 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGI 480
            G AQHG  E + +++  M L G+KP+ VTFV ++ ACSH GLV++G+Q F+SM   YGI
Sbjct: 312 VGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGI 371

Query: 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQ 540
            P+++HY C +DLL+R G L EA  LI +MPY  +   W +LL+AC+ + NA++      
Sbjct: 372 NPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVAD 431

Query: 541 KLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600
            LL+L P + + YVLLSN+ A   +W+    VRKLM D  I+K PG+S+IE       F 
Sbjct: 432 NLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFH 491

Query: 601 ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660
           A +      +EI   L+++  +++  GYVP+T  V+ D++E EKE  +  HSE+LA+AFG
Sbjct: 492 AGEVPIDLREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFG 551

Query: 661 LINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++ S     IR+ KNLR+C DCH   K +SEI++R+I+VRDA RFH F+ G CSC +FW
Sbjct: 552 ILRSPLGSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 203/464 (43%), Gaps = 76/464 (16%)

Query: 17  SCKSLKQALQIHGQIVHSGLNHHISSSQL-ISFFALSGCKNGLFRSRILFSQIDNPNIFI 75
           S +SL++A   H +++  GL  H  +  L +S +A S     L  +R+LF +    ++ +
Sbjct: 18  SPRSLRRA---HARLIKEGLAQHPPAPALLVSAYAKSRL---LPDTRLLFDETPRRDLHL 71

Query: 76  WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI 135
           +++L+   S S+SP+  L L   MLS   + P++F    + ++ ARL S   G Q+H H 
Sbjct: 72  YSSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHF 131

Query: 136 IKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPAL 195
           +      D  ++++LI  Y   G  ++A KVF+  +A++ V +  LI+GY        AL
Sbjct: 132 VASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEAL 191

Query: 196 WLFRKM--------------------------------QDSCIQPDAFTFVAMFSACTEL 223
            LFR M                                +D     DAF   +      +L
Sbjct: 192 ELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADL 251

Query: 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS 283
               +G+Q H++  + LG   S+M++  AV++MY+KC  ++ A  VF  +   +   +W+
Sbjct: 252 AAHVLGRQLHSLTMR-LG-FSSSMIVGNAVVDMYSKCSDIHSAREVFEEI-TGRDIISWT 308

Query: 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343
           +M+ G  + G+ E A  L+D                               +M   G+ P
Sbjct: 309 TMLVGEAQHGRAEEAFSLYD-------------------------------RMVLAGVKP 337

Query: 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403
           +EVT V ++ AC   G +  G++L             +   T  +D+ ++ G +  A  +
Sbjct: 338 NEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEEL 397

Query: 404 FYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
              +P  +   + + S++S   ++   E SI V     L+ L+P
Sbjct: 398 ITTMP-YVPDEATWASLLSACKKYNNAEMSIRVAD--NLLELRP 438



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 9   SSLLALLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI 68
           SSL+ +   C     A ++   IV     + +  + LIS + L+G  +       LF  +
Sbjct: 144 SSLIDMYCKCGVPDDARKVFDSIV---AKNSVMWTALISGYVLNGRSDEALE---LFRSM 197

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
               +F W  L+ G+ RS     A+ L+  M   G+   + F     +   A L++   G
Sbjct: 198 PGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLG 257

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
            Q+H   ++ G    + + NA++  YS    I++A +VFE    RD++S+ T++ G AQ 
Sbjct: 258 RQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQH 317

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
                A  L+ +M  + ++P+  TFV +  AC+     + G+Q    +    G +   + 
Sbjct: 318 GRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYG-INPRLQ 376

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM 305
             T  +++ ++ G +  AE + +TM      A W+S++S   +    E + ++ D +
Sbjct: 377 HYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNL 433


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 355/645 (55%), Gaps = 58/645 (8%)

Query: 87  DSP-QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHI------IKFG 139
           D P   AL L   + + G V  +  +   ++  C R  +   G  IH H+          
Sbjct: 44  DGPFTAALALLPDIAAAG-VRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGA 102

Query: 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLI----NGYAQVKEPCPAL 195
               LF+ N+L+  Y+ FG +++A ++F G   R++VS+ T++    N   + KE   AL
Sbjct: 103 THGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKE---AL 159

Query: 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVIN 255
               +M+   +  +++TF ++  AC     P +    HA + K                 
Sbjct: 160 RFLVEMRRDGVAANSYTFSSVLGAC---GTPGVLAAMHADIIK----------------- 199

Query: 256 MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315
                            +G+       SS+I  Y + G ++  R +FD+M   DLV W +
Sbjct: 200 -----------------VGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNS 242

Query: 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375
           +I+G++Q G    A+ELF +M+  G   ++ T+ +VLRAC G+  L+ G+++H   ++  
Sbjct: 243 IIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLK-- 300

Query: 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435
            + R++ L  A++DMY KCG +  A ++F ++    + V  ++++ISGLAQ+G    ++ 
Sbjct: 301 -YDRDLILHNALLDMYCKCGCLLDADALFSRMHD--RDVISWSTMISGLAQNGRSVEALK 357

Query: 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLL 494
           VF  M+  G  P+ +T V VL ACSH GLVE+G  +F SM   +GI+P+ EH  CMVDLL
Sbjct: 358 VFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLL 417

Query: 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554
            R G+LDEA   I  M ++ +SVIWR LL ACR+H+NA +   A  ++L LEP+     +
Sbjct: 418 GRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARI 477

Query: 555 LLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIEL 614
           LLSN+ A+  +W  A +  K M D G++K PG S+IE    +H F+A + SHP +  I  
Sbjct: 478 LLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQ 537

Query: 615 MLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITK 674
            L  +  + K  GYVP T  V+ D+  E+KE ++ YHSEKLA+AFG +NS   + +RI K
Sbjct: 538 ELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMK 597

Query: 675 NLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           NLRICGDCH   KL+S+   + I++RD +RFH F+ G CSC D+W
Sbjct: 598 NLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 193/409 (47%), Gaps = 49/409 (11%)

Query: 42  SSQLISFFALSGCKNGLFRSRI-LFSQIDNPNIFIWNTLMRGYSRSDS-PQEALVLYTSM 99
           S+ L+S +A    K G+    + LF  +   N+  W T++   + +    +EAL     M
Sbjct: 110 SNSLVSMYA----KFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEM 165

Query: 100 LSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159
              G V+ N++TF  VL +C       +   +H  IIK GL+ D+F+R++LI  Y   G 
Sbjct: 166 RRDG-VAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGD 221

Query: 160 INNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219
           +++   VF+  +  DLV +N++I G+AQ  +   A+ LF +M++S    +  T  ++  A
Sbjct: 222 LDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRA 281

Query: 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279
           CT +    +G+Q HA V K       +++L  A+++MY KCG +  A+ +FS M   +  
Sbjct: 282 CTGMVMLEVGRQVHAHVLK----YDRDLILHNALLDMYCKCGCLLDADALFSRM-HDRDV 336

Query: 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339
            +WS+MISG  + G+                                 +AL++F  M++ 
Sbjct: 337 ISWSTMISGLAQNGR-------------------------------SVEALKVFDLMKAE 365

Query: 340 GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDT 399
           G  P+ +TMV VL AC   G ++ G    +   +             ++D+  + G +D 
Sbjct: 366 GPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDE 425

Query: 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           A+    ++     +V ++ +++     H     ++A +   E++ L+P+
Sbjct: 426 AMKFIGEMKFEPDSV-IWRTLLGACRMH--KNATLASYAATEILKLEPE 471


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/556 (39%), Positives = 327/556 (58%), Gaps = 56/556 (10%)

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQ-DSCIQPDAFTFVAMFSACTEL---NDPR---IG 229
           SYNT I   A    P  A+ L+R M  +    P+ +T+  + +AC  L   + PR    G
Sbjct: 59  SYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAG 118

Query: 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289
              HA +++                      GL +  +R  S           +SM+S Y
Sbjct: 119 TAVHASLFRR---------------------GLESR-DRFIS-----------ASMLSFY 145

Query: 290 TREGKIERARQLFDQM--DQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347
              G +  AR++FD+   +QRDL  W +++  Y   G ++  L LF +M    +  DEVT
Sbjct: 146 AAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQM----VATDEVT 201

Query: 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIF--LTTAVIDMYAKCGSIDTALSVFY 405
           ++AV+ AC  LGALD G+  H  +       RN    L TA+++MY +CG +++A SVF+
Sbjct: 202 LLAVVSACSHLGALDTGRWAHAYHARTC---RNTTRNLGTALLNMYMRCGDVESAWSVFH 258

Query: 406 K-IPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464
           + + K+++T S+   +I+GLA +GL   ++ +F EM+ +G+ PD +T   VL ACSH G+
Sbjct: 259 EMLDKDVRTWSV---MIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGM 315

Query: 465 VEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523
           V+EGK F   M + Y ++P +EHYGC+VDLL R G+L+EA  LI+++P+ A+  +W ALL
Sbjct: 316 VDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALL 375

Query: 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583
            ACR H+N  +G++A  ++L L+P H    V LSN  A   +W+  ++VR  M +  I K
Sbjct: 376 VACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYK 435

Query: 584 PPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEE 643
           PPG S +E +G ++ FL+   SHPQ+  I  ML ++   L   G+ P+T +V FD+DEE+
Sbjct: 436 PPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEED 495

Query: 644 KETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAI 703
           KE  +S HSEKLALA GLI++R    IRI KNLRIC DCH   K++SE+Y R I+VRD  
Sbjct: 496 KEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRN 555

Query: 704 RFHLFKKGNCSCMDFW 719
           RFH FK G+CSC+D+W
Sbjct: 556 RFHHFKNGSCSCLDYW 571



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 178/388 (45%), Gaps = 52/388 (13%)

Query: 70  NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARL------S 123
           +P  F +NT +R  +    P  A+ LY SML   + +PNN+T+P +L +CARL       
Sbjct: 54  HPTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPR 113

Query: 124 SFKSGCQIHCHIIKFGLEF-DLFIRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNT 180
              +G  +H  + + GLE  D FI  +++ FY+  G +  A +VF+ S    RDL  +N+
Sbjct: 114 EAAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNS 173

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           L++ Y         L LFR+M    +  D  T +A+ SAC+ L     G+  HA  Y   
Sbjct: 174 LLHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHA--YHAR 227

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            C  +   L TA++NMY +CG +  A  VF  M + K    WS MI+G    G    A +
Sbjct: 228 TCRNTTRNLGTALLNMYMRCGDVESAWSVFHEM-LDKDVRTWSVMIAGLAVNGLPRDALK 286

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF                                +M+++G+ PD +TM AVL AC   G 
Sbjct: 287 LF-------------------------------AEMKNIGVDPDSITMTAVLSACSHAGM 315

Query: 361 LDFGKR-LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNS 419
           +D GK  LH   IE       I     V+D+  + G ++ AL++   +P     V+L+ +
Sbjct: 316 VDEGKMFLHCMPIE-YHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFK-ADVALWGA 373

Query: 420 IISGLAQHGLGETSIAVFREMELMGLKP 447
           ++     H      +     ME++ L P
Sbjct: 374 LLVACRAH--KNVDMGQMAAMEILKLDP 399



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 121/270 (44%), Gaps = 25/270 (9%)

Query: 27  IHGQIVHSGLN--HHISSSQLISFFALSGCKNGLFRSRILF--SQIDNPNIFIWNTLMRG 82
           +H  +   GL       S+ ++SF+A +G    L  +R +F  S  +  ++ +WN+L+  
Sbjct: 121 VHASLFRRGLESRDRFISASMLSFYAAAG---DLPAAREVFDRSPPNQRDLALWNSLLHA 177

Query: 83  YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEF 142
           Y       + L  +   L + +V+ +  T   V+++C+ L +  +G   H +  +     
Sbjct: 178 YL-----SQGLYTHVLRLFRQMVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNT 232

Query: 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202
              +  AL++ Y   G + +A  VF   L +D+ +++ +I G A    P  AL LF +M+
Sbjct: 233 TRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMK 292

Query: 203 DSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA------VINM 256
           +  + PD+ T  A+ SAC+       GK F       L C+     L+        V+++
Sbjct: 293 NIGVDPDSITMTAVLSACSHAGMVDEGKMF-------LHCMPIEYHLQPTIEHYGCVVDL 345

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
             + G +  A  +  T+      A W +++
Sbjct: 346 LGRAGQLEEALALIETVPFKADVALWGALL 375


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/692 (34%), Positives = 382/692 (55%), Gaps = 57/692 (8%)

Query: 6   LEHSSLLALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRS 61
           L+ S    LL++C   KS+ +A  +H +I+ +  +  I   ++L+  +   G    L  +
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGF---LEDA 73

Query: 62  RILFSQIDNPNIFIWNTLM-------------------------------RGYSRSDSPQ 90
           R +F  +   N F WN ++                                G+++ D  +
Sbjct: 74  RKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFE 133

Query: 91  EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150
           EAL     M S+  V  N ++F   L++CA L     G QIH  I K     D+++ +AL
Sbjct: 134 EALRFVVDMHSEDFV-LNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSAL 192

Query: 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210
           +  YS    + +A + F+    R++VS+N+LI  Y Q      AL +F +M +  I+PD 
Sbjct: 193 VDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDE 252

Query: 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270
            T  ++ SAC  L+  R G Q HA V K+     ++++L  A+++MYAKC  +N A  VF
Sbjct: 253 ITLASVASACASLSAIREGLQIHARVMKH-DKYRNDLVLGNALVDMYAKCRRVNEARLVF 311

Query: 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330
             M + +   + +SM+SGY +   ++ AR +F  M +R++VSW A+I+GY+Q G   +A+
Sbjct: 312 DRMPL-RDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAV 370

Query: 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR-----NIFLTT 385
            LF  ++   I P   T   +L AC  L  L  G++ H   +++  + +     +IF+  
Sbjct: 371 RLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGN 430

Query: 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445
           ++IDMY KCG ++    VF ++ +    VS +N++I G AQ+G G  ++ +FREM + G 
Sbjct: 431 SLIDMYMKCGLVEDGRLVFERMLER-DNVS-WNAMIVGYAQNGYGTEALEIFREMLVSGE 488

Query: 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
           +PD VT + VL ACSH GLVEEG+ +F+SM + +G+ P  +HY CMVDLL R G LDEA 
Sbjct: 489 RPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEAN 548

Query: 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564
            LIQ+MP + ++V+W +LLAAC++H N  +G+   ++LL+++P +   YVLLSNM AE  
Sbjct: 549 NLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELG 608

Query: 565 RWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624
           RW++  +VRK M   G+ K PG S+I     LH F+   K HP  K+I L+LK +T ++K
Sbjct: 609 RWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMK 668

Query: 625 SAGYVPNTVQVVFDVD---EEEKETVVSYHSE 653
             GYVP       D D   EEE ++ +  HSE
Sbjct: 669 RVGYVPEA-----DDDEPYEEESDSELILHSE 695



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 158/316 (50%), Gaps = 7/316 (2%)

Query: 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINM 256
           L RK+       D+  F  +   C +       +  HA + K      S + ++  ++++
Sbjct: 6   LVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQ--FSSEIFIQNRLVDV 63

Query: 257 YAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM 316
           Y KCG +  A +VF  M   ++T +W++++   T+ G ++ A  LF  M +RD  SW AM
Sbjct: 64  YGKCGFLEDARKVFDHM-QQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAM 122

Query: 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376
           +SG++Q   F +AL     M S     +E +  + L AC GL  L  G ++H   I    
Sbjct: 123 VSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIH-GLIAKSR 181

Query: 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436
           +  ++++ +A++DMY+KC  + +A   F  +  +++ +  +NS+I+   Q+G    ++ V
Sbjct: 182 YSLDVYMGSALVDMYSKCRVVASAQRAFDDM--DVRNIVSWNSLITCYEQNGPAGKALEV 239

Query: 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLA 495
           F  M   G++PD +T  +V  AC+    + EG Q    ++ +   +  +     +VD+ A
Sbjct: 240 FVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYA 299

Query: 496 RDGRLDEAYGLIQSMP 511
           +  R++EA  +   MP
Sbjct: 300 KCRRVNEARLVFDRMP 315


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 367/673 (54%), Gaps = 56/673 (8%)

Query: 64  LFSQIDNP-------------NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
           ++S++D+P             N+  W +L+ G +++     ALV +  M  +G+V PN+F
Sbjct: 51  MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVV-PNDF 109

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TFP    + A L    +G QIH   +K G   D+F+  +    Y      ++A K+F+  
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             R+L ++N  I+       P  A+  F + +     P++ TF A  +AC++     +G 
Sbjct: 170 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGM 229

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           Q H +V ++     +++ +   +I+ Y KC  +  +E +F+ MG +K+  +W S+++ Y 
Sbjct: 230 QLHGLVLRS--GFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMG-TKNAVSWCSLVAAYV 286

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           +  + E+A  L+ +  ++D+V  +                              +  + +
Sbjct: 287 QNHEDEKASVLYLR-SRKDIVETS------------------------------DFMISS 315

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-K 409
           VL AC G+  L+ G+ +H   ++  V  R IF+ +A++DMY KCG I+ +   F ++P K
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACV-ERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 374

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL--KPDGVTFVTVLCACSHGGLVEE 467
           NL T    NS+I G A  G  + ++A+F EM   G    P+ +TFV++L ACS  G VE 
Sbjct: 375 NLVTR---NSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVEN 431

Query: 468 GKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G + F+SM + YGI+P  EHY C+VD+L R G ++ AY  I+ MP      +W AL  AC
Sbjct: 432 GMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNAC 491

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H   ++G +A + L  L+P    ++VLLSN  A   RW EA  VR+ +   GI+K  G
Sbjct: 492 RMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAG 551

Query: 587 WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
           +S+I     +H F A  +SH   KEI+  L  +  ++++AGY P+    ++D++EEEK  
Sbjct: 552 YSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAA 611

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            VS+HSEKLALAFGL++      IRITKNLRICGDCH  FK +S   +REI+VRD  RFH
Sbjct: 612 EVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFH 671

Query: 707 LFKKGNCSCMDFW 719
            FK G CSC D+W
Sbjct: 672 RFKDGICSCKDYW 684



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 179/422 (42%), Gaps = 37/422 (8%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +I   N+  WN  +        P+EA+  +     +    PN+ TF   LN+C+
Sbjct: 162 ARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIE-FRRIDGHPNSITFCAFLNACS 220

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                  G Q+H  +++ G + D+ + N LI FY     I ++  +F     ++ VS+ +
Sbjct: 221 DWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCS 280

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           L+  Y Q  E   A  L+ + +   ++   F   ++ SAC  +    +G+  HA   K  
Sbjct: 281 LVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK-- 338

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            CV   + + +A+++MY KCG +  +E+ F  M   K+    +S+I GY  +G+++ A  
Sbjct: 339 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALA 397

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF++M  R                               G  P+ +T V++L AC   GA
Sbjct: 398 LFEEMAPR-----------------------------GCGPTPNYMTFVSLLSACSRAGA 428

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G ++                 + ++DM  + G ++ A     K+P    T+S++ ++
Sbjct: 429 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQ-PTISVWGAL 487

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
            +    H  G+  + +     L  L P D    V +    +  G   E     E +   G
Sbjct: 488 QNACRMH--GKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVG 545

Query: 480 IK 481
           IK
Sbjct: 546 IK 547



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 186/433 (42%), Gaps = 50/433 (11%)

Query: 114 FVLNSCARLSSFKSGCQIHCHIIK-FGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
            +L +    SS + G  +H  I+K        F+ N LI+ YS   +  +A  V   + A
Sbjct: 11  LLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R++VS+ +LI+G AQ      AL  F +M+   + P+ FTF   F A   L  P  GKQ 
Sbjct: 71  RNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI 130

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA+  K   C          +++++  C   +M                       Y + 
Sbjct: 131 HALAVK---C--------GRILDVFVGCSAFDM-----------------------YCKT 156

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
              + AR+LFD++ +R+L +W A IS     G   +A+E F +   +  HP+ +T  A L
Sbjct: 157 RLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFL 216

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412
            AC     L+ G +LH   + +  F  ++ +   +ID Y KC  I ++  +F ++    K
Sbjct: 217 NACSDWLHLNLGMQLHGLVLRS-GFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEM--GTK 273

Query: 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472
               + S+++   Q+   E +  ++       ++       +VL AC+    +E G+   
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIH 333

Query: 473 ESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
              +   ++  +     +VD+  + G ++++      MP + N V            RN+
Sbjct: 334 AHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVT-----------RNS 381

Query: 533 KIGEIAGQKLLDL 545
            IG  A Q  +D+
Sbjct: 382 LIGGYAHQGQVDM 394



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 167/342 (48%), Gaps = 16/342 (4%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +  A L +C     L   +Q+HG ++ SG +  +S  + LI F+    CK  +  S I+F
Sbjct: 211 TFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG--KCKQ-IRSSEIIF 267

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +++   N   W +L+  Y ++   ++A VLY     K IV  ++F    VL++CA ++  
Sbjct: 268 TEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKDIVETSDFMISSVLSACAGMAGL 326

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  IH H +K  +E  +F+ +AL+  Y   G I ++ + F+    ++LV+ N+LI GY
Sbjct: 327 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 386

Query: 186 AQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           A   +   AL LF +M  +     P+  TFV++ SAC+       G +    +    G +
Sbjct: 387 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYG-I 445

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RAR 299
                  + +++M  + G++  A      M +  + + W ++ +     GK +     A 
Sbjct: 446 EPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAE 505

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            LF ++D +D  +   + + ++  G +++A  +  +++ +GI
Sbjct: 506 NLF-KLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGI 546


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/662 (33%), Positives = 369/662 (55%), Gaps = 26/662 (3%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF ++ + NI  WN L+ GY ++    EA  ++  M  + +VS       +V N   
Sbjct: 67  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
            ++          + + + +    F+++         G I++A K++E    +D ++  +
Sbjct: 127 DVAESLFWKMPEKNKVSWTVMLIGFLQD---------GRIDDACKLYEMIPDKDNIARTS 177

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           +I+G  +      A  +F +M +  +     T+  M +   + N     ++   V+ +  
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKT 233

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
               ++ML+       Y + G +  AE +F  M + K   A ++MISG  ++G+I +AR+
Sbjct: 234 EVSWTSMLMG------YVQNGRIEDAEELFEVMPV-KPVIACNAMISGLGQKGEIAKARR 286

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           +FD M +R+  SW  +I  + + G   +AL+LF  M+  G+ P   T++++L  C  L +
Sbjct: 287 VFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLAS 346

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           L  GK++H Q +    F  ++++ + ++ MY KCG +  +  +F + P   K + ++NSI
Sbjct: 347 LHHGKQVHAQLV-RCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPS--KDIIMWNSI 403

Query: 421 ISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-Y 478
           ISG A HGLGE ++ VF EM L G  KP+ VTFV  L ACS+ G+VEEG + +ESM + +
Sbjct: 404 ISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVF 463

Query: 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538
           G+KP   HY CMVD+L R GR +EA  +I SM  + ++ +W +LL ACR H    + E  
Sbjct: 464 GVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFC 523

Query: 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHR 598
            +KL+++EP++   Y+LLSNM A   RW +  ++RKLM    ++K PG S+ E    +H 
Sbjct: 524 AKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHA 583

Query: 599 FL-ASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLAL 657
           F      SHP+ + I  +L ++   L+ AGY P+    + DVDEEEK   + YHSE+LA+
Sbjct: 584 FTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAV 643

Query: 658 AFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717
           A+ L+       IR+ KNLR+C DCH A K++S++  REI++RDA RFH F+ G CSC D
Sbjct: 644 AYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKD 703

Query: 718 FW 719
           +W
Sbjct: 704 YW 705



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 206/495 (41%), Gaps = 94/495 (18%)

Query: 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ 207
           N  I   S  G I+ A K+F+   ++ + S+N+++ GY     P  A  LF +M D  I 
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
                 V+ +    E+++ R  K F  +  +N+       +  TA++  Y   G +++AE
Sbjct: 81  -SWNGLVSGYMKNGEIDEAR--KVFDLMPERNV-------VSWTALVKGYVHNGKVDVAE 130

Query: 268 RVFSTMGMSKSTAAW-------------------------------SSMISGYTREGKIE 296
            +F  M   K+  +W                               +SMI G  +EG+++
Sbjct: 131 SLFWKMP-EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVD 189

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            AR++FD+M +R +++WT M++GY Q      A ++F  M        EV+  ++L   V
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSMLMGYV 245

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
             G ++  + L +     V+  + +    A+I    + G I  A  VF  + +  +  + 
Sbjct: 246 QNGRIEDAEELFE-----VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKE--RNDAS 298

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ------ 470
           + ++I    ++G    ++ +F  M+  G++P   T +++L  C+    +  GKQ      
Sbjct: 299 WQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLV 358

Query: 471 -----------------------FFESMLNYGIKPQME--HYGCMVDLLARDGRLDEAYG 505
                                    +S L +   P  +   +  ++   A  G  +EA  
Sbjct: 359 RCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALK 418

Query: 506 LIQSMPYDA----NSVIWRALLAACR----LHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557
           +   MP       N V + A L+AC     +    KI E + + +  ++P   AHY  + 
Sbjct: 419 VFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYE-SMESVFGVKP-ITAHYACMV 476

Query: 558 NMLAETYRWEEARQV 572
           +ML    R+ EA ++
Sbjct: 477 DMLGRAGRFNEAMEM 491



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 176/397 (44%), Gaps = 48/397 (12%)

Query: 54  CKNG-LFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           CK G +  +R +F ++   ++  W T++ GY +++   +A  ++  M  K  VS  +   
Sbjct: 183 CKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLM 242

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
            +V N   R+   +        + +      +   NA+I      G I  A +VF+    
Sbjct: 243 GYVQN--GRIEDAE-------ELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKE 293

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQF 232
           R+  S+ T+I  + +      AL LF  MQ   ++P   T +++ S C  L     GKQ 
Sbjct: 294 RNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQV 353

Query: 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE 292
           HA + +    V  ++ + + ++ MY KCG +  ++ +F     SK    W+S+ISGY   
Sbjct: 354 HAQLVRCQFDV--DVYVASVLMTMYIKCGELVKSKLIFDRFP-SKDIIMWNSIISGYASH 410

Query: 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVL 352
           G  E A ++F +M           +SG ++                    P+EVT VA L
Sbjct: 411 GLGEEALKVFCEMP----------LSGSTK--------------------PNEVTFVATL 440

Query: 353 RACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA-VIDMYAKCGSIDTALSVFYKIPKNL 411
            AC   G ++ G ++++  +E+V   + I    A ++DM  + G  + A+ +   +    
Sbjct: 441 SACSYAGMVEEGLKIYES-MESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE- 498

Query: 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
              +++ S++     H   +  +A F   +L+ ++P+
Sbjct: 499 PDAAVWGSLLGACRTH--SQLDVAEFCAKKLIEIEPE 533



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 3/237 (1%)

Query: 53  GCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTF 112
           G K  + ++R +F  +   N   W T+++ + R+    EAL L+  M  +G V P   T 
Sbjct: 276 GQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQG-VRPTFPTL 334

Query: 113 PFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA 172
             +L+ CA L+S   G Q+H  +++   + D+++ + L+  Y   G +  +  +F+   +
Sbjct: 335 ISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPS 394

Query: 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDS-CIQPDAFTFVAMFSACTELNDPRIGKQ 231
           +D++ +N++I+GYA       AL +F +M  S   +P+  TFVA  SAC+       G +
Sbjct: 395 KDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLK 454

Query: 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISG 288
            +  +    G V         +++M  + G  N A  +  +M +    A W S++  
Sbjct: 455 IYESMESVFG-VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 10  SLLALLESCKSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           S+L++  S  SL    Q+H Q+V    +  +  +S L++ +   G    L +S+++F + 
Sbjct: 336 SILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG---ELVKSKLIFDRF 392

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
            + +I +WN+++ GY+     +EAL ++  M   G   PN  TF   L++C+     + G
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452

Query: 129 CQIH 132
            +I+
Sbjct: 453 LKIY 456


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 367/673 (54%), Gaps = 56/673 (8%)

Query: 64  LFSQIDNP-------------NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110
           ++S++D+P             N+  W +L+ G +++     ALV +  M  +G+V PN+F
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVV-PNDF 59

Query: 111 TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170
           TFP    + A L    +G QIH   +K G   D+F+  +    Y      ++A K+F+  
Sbjct: 60  TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119

Query: 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230
             R+L ++N  I+       P  A+  F + +     P++ TF A  +AC++     +G 
Sbjct: 120 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGM 179

Query: 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290
           Q H +V ++     +++ +   +I+ Y KC  +  +E +F+ MG +K+  +W S+++ Y 
Sbjct: 180 QLHGLVLRS--GFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMG-TKNAVSWCSLVAAYV 236

Query: 291 REGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350
           +  + E+A  L+ +  ++D+V  +                              +  + +
Sbjct: 237 QNHEDEKASVLYLR-SRKDIVETS------------------------------DFMISS 265

Query: 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-K 409
           VL AC G+  L+ G+ +H   ++  V  R IF+ +A++DMY KCG I+ +   F ++P K
Sbjct: 266 VLSACAGMAGLELGRSIHAHAVKACV-ERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 324

Query: 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL--KPDGVTFVTVLCACSHGGLVEE 467
           NL T    NS+I G A  G  + ++A+F EM   G    P+ +TFV++L ACS  G VE 
Sbjct: 325 NLVTR---NSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVEN 381

Query: 468 GKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526
           G + F+SM + YGI+P  EHY C+VD+L R G ++ AY  I+ MP      +W AL  AC
Sbjct: 382 GMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNAC 441

Query: 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPG 586
           R+H   ++G +A + L  L+P    ++VLLSN  A   RW EA  VR+ +   GI+K  G
Sbjct: 442 RMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAG 501

Query: 587 WSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKET 646
           +S+I     +H F A  +SH   KEI+  L  +  ++++AGY P+    ++D++EEEK  
Sbjct: 502 YSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAA 561

Query: 647 VVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFH 706
            VS+HSEKLALAFGL++      IRITKNLRICGDCH  FK +S   +REI+VRD  RFH
Sbjct: 562 EVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFH 621

Query: 707 LFKKGNCSCMDFW 719
            FK G CSC D+W
Sbjct: 622 RFKDGICSCKDYW 634



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 179/422 (42%), Gaps = 37/422 (8%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA 120
           +R LF +I   N+  WN  +        P+EA+  +     +    PN+ TF   LN+C+
Sbjct: 112 ARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIE-FRRIDGHPNSITFCAFLNACS 170

Query: 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNT 180
                  G Q+H  +++ G + D+ + N LI FY     I ++  +F     ++ VS+ +
Sbjct: 171 DWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCS 230

Query: 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240
           L+  Y Q  E   A  L+ + +   ++   F   ++ SAC  +    +G+  HA   K  
Sbjct: 231 LVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK-- 288

Query: 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQ 300
            CV   + + +A+++MY KCG +  +E+ F  M   K+    +S+I GY  +G+++ A  
Sbjct: 289 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALA 347

Query: 301 LFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360
           LF++M  R                               G  P+ +T V++L AC   GA
Sbjct: 348 LFEEMAPR-----------------------------GCGPTPNYMTFVSLLSACSRAGA 378

Query: 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSI 420
           ++ G ++                 + ++DM  + G ++ A     K+P    T+S++ ++
Sbjct: 379 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQ-PTISVWGAL 437

Query: 421 ISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479
            +    H  G+  + +     L  L P D    V +    +  G   E     E +   G
Sbjct: 438 QNACRMH--GKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVG 495

Query: 480 IK 481
           IK
Sbjct: 496 IK 497



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 167/342 (48%), Gaps = 16/342 (4%)

Query: 10  SLLALLESCKS---LKQALQIHGQIVHSGLNHHIS-SSQLISFFALSGCKNGLFRSRILF 65
           +  A L +C     L   +Q+HG ++ SG +  +S  + LI F+    CK  +  S I+F
Sbjct: 161 TFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG--KCKQ-IRSSEIIF 217

Query: 66  SQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSF 125
           +++   N   W +L+  Y ++   ++A VLY     K IV  ++F    VL++CA ++  
Sbjct: 218 TEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKDIVETSDFMISSVLSACAGMAGL 276

Query: 126 KSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGY 185
           + G  IH H +K  +E  +F+ +AL+  Y   G I ++ + F+    ++LV+ N+LI GY
Sbjct: 277 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 336

Query: 186 AQVKEPCPALWLFRKM--QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV 243
           A   +   AL LF +M  +     P+  TFV++ SAC+       G +    +    G +
Sbjct: 337 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYG-I 395

Query: 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE----RAR 299
                  + +++M  + G++  A      M +  + + W ++ +     GK +     A 
Sbjct: 396 EPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAE 455

Query: 300 QLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341
            LF ++D +D  +   + + ++  G +++A  +  +++ +GI
Sbjct: 456 NLF-KLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGI 496


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 310/512 (60%), Gaps = 36/512 (7%)

Query: 208 PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAE 267
           P++FT      AC+ +     G+Q H+  ++    +  +  ++T ++N+YAKC  + +A 
Sbjct: 129 PNSFTLAFALKACSVVPALGEGRQLHSQAFRR--GLEPSPYVQTGLLNLYAKCEEVALAR 186

Query: 268 RVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327
            VF  M                               +  ++L +W+AMI GYS+VG  +
Sbjct: 187 TVFDGM-------------------------------VGDKNLAAWSAMIGGYSRVGMVN 215

Query: 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387
           +AL LF +M++  ++PDEVTMV+V+ AC   GALD G+ +H  +I+      ++ L+TA+
Sbjct: 216 EALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHA-FIDRKGITVDLELSTAL 274

Query: 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447
           IDMYAKCG I+ A  VF  + +  +    ++++I GLA HGL E ++ +F  M  + ++P
Sbjct: 275 IDMYAKCGLIERAKGVFDAMAE--RDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRP 332

Query: 448 DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
           + VTF+ VL AC+H GLV EG++++ +M   GIKP ME+YGCMVDL  R   LDEAY  +
Sbjct: 333 NNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFV 392

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
             M    NSVIWR LL A +      I + A +KLL+LEP +  +YVLLSN+ A   +W+
Sbjct: 393 TGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWD 452

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
               +RK M ++ +    G S IE NG LH+F+ S  SHP+ KEI L+L+++  ++  AG
Sbjct: 453 RVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREIADRVVRAG 512

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           + P T  V+ DV EEEKE  +  HSE+LA+A+GL+ +++   IR+ KNLR C DCH   K
Sbjct: 513 HKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAK 572

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           ++S+ Y REI+VRD +RFH F +G+CSC DFW
Sbjct: 573 IVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 176/356 (49%), Gaps = 41/356 (11%)

Query: 61  SRILFSQIDNPNIFIWNTLMRGYSRSDSPQ---EALVLYTSMLSKGIVSPNNFTFPFVLN 117
           +R LF QI  P  F +N+L+R  S +       + +++Y  ML  G   PN+FT  F L 
Sbjct: 80  ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 139

Query: 118 SCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-RDLV 176
           +C+ + +   G Q+H    + GLE   +++  L++ Y+    +  A  VF+G +  ++L 
Sbjct: 140 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 199

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
           +++ +I GY++V     AL LFR+MQ + + PD  T V++ SAC +     +G+  HA +
Sbjct: 200 AWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFI 259

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            +    +  ++ L TA+I+MYAKCGL+  A+ VF  M   + T AWS+MI G    G +E
Sbjct: 260 DRK--GITVDLELSTALIDMYAKCGLIERAKGVFDAMA-ERDTKAWSAMIVGLAIHGLVE 316

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
                                           AL+LF +M  L + P+ VT + VL AC 
Sbjct: 317 -------------------------------VALKLFSRMLELKVRPNNVTFIGVLSACA 345

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF--YKIPKN 410
             G ++ G+R +   ++ +    ++     ++D++ +   +D A S      IP N
Sbjct: 346 HSGLVNEGRR-YWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPN 400



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 133/276 (48%), Gaps = 9/276 (3%)

Query: 15  LESCK---SLKQALQIHGQIVHSGLNHH-ISSSQLISFFALSGCKNGLFRSRILFSQIDN 70
           L++C    +L +  Q+H Q    GL       + L++ +A   C+       +    + +
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYA--KCEEVALARTVFDGMVGD 195

Query: 71  PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQ 130
            N+  W+ ++ GYSR     EAL L+  M +   V+P+  T   V+++CA+  +   G  
Sbjct: 196 KNLAAWSAMIGGYSRVGMVNEALGLFREMQAAD-VNPDEVTMVSVISACAKAGALDLGRW 254

Query: 131 IHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190
           +H  I + G+  DL +  ALI  Y+  G I  A  VF+    RD  +++ +I G A    
Sbjct: 255 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGL 314

Query: 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250
              AL LF +M +  ++P+  TF+ + SAC        G+++ + + + LG +  +M   
Sbjct: 315 VEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTM-QELG-IKPSMENY 372

Query: 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMI 286
             +++++ +  L++ A    + M +  ++  W +++
Sbjct: 373 GCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLL 408



 Score = 42.4 bits (98), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 14/259 (5%)

Query: 334 GKMESLGIHPDEVTMVAVLRAC----VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389
           G+  SL  H  E  +VA++R C    + L A        +       F  +  L ++   
Sbjct: 9   GEAASLPRHLLEAHVVALVRRCCPGLLALRAAHARLIRLRLPRLTAAFALSKLLASSSSS 68

Query: 390 MYAKCGSIDT-ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET---SIAVFREMELMGL 445
             + CG+  + A ++F +IP+   T   +NS+I  L+          ++ V+R M   G 
Sbjct: 69  SSSSCGAAPSYARNLFDQIPE--PTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGS 126

Query: 446 K-PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504
             P+  T    L ACS    + EG+Q        G++P       +++L A+   +  A 
Sbjct: 127 PLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALAR 186

Query: 505 GLIQSMPYDANSVIWRALLAA-CRLHR-NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562
            +   M  D N   W A++    R+   N  +G     +  D+ PD      ++S   A+
Sbjct: 187 TVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVIS-ACAK 245

Query: 563 TYRWEEARQVRKLMDDSGI 581
               +  R V   +D  GI
Sbjct: 246 AGALDLGRWVHAFIDRKGI 264


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 346/605 (57%), Gaps = 43/605 (7%)

Query: 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYS---IFGYINNAHKVFEGSLARDLV 176
           ++ +S +   QI  + IK  +E D+     LI+F +       ++ A  +FE     D+V
Sbjct: 37  SKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIV 95

Query: 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVV 236
            +N++  GY++   P     LF ++ +  I PD +TF ++  AC        G+Q H + 
Sbjct: 96  IFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLS 155

Query: 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296
            K LG +  N+ +   +INMY +C                                  ++
Sbjct: 156 MK-LG-LDDNVYVCPTLINMYTECE--------------------------------DVD 181

Query: 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356
            AR +FD++ +  +V + AMI+GY++    ++AL LF +M+   + P+E+T+++VL +C 
Sbjct: 182 SARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA 241

Query: 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416
            LG+LD GK +H+ Y +   F + + + TA+IDM+AKCGS+D A+S+F K+    K    
Sbjct: 242 LLGSLDLGKWIHK-YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKM--RYKDTQA 298

Query: 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476
           ++++I   A HG  E S+ +F  M    ++PD +TF+ +L ACSH G VEEG+++F  M+
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358

Query: 477 N-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535
           + +GI P ++HYG MVDLL+R G L++AY  I  +P     ++WR LLAAC  H N  + 
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLA 418

Query: 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595
           E   +++ +L+  HG  YV+LSN+ A   +WE    +RK+M D    K PG S IE N  
Sbjct: 419 EKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNV 478

Query: 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVF-DVDEEEKETVVSYHSEK 654
           +H F +       T ++   L +M  +LK +GYVP+T  VV  +++++EKE  + YHSEK
Sbjct: 479 VHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEK 538

Query: 655 LALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCS 714
           LA+ FGL+N+    TIR+ KNLR+C DCH A KL+S I+ R++++RD  RFH F+ G CS
Sbjct: 539 LAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCS 598

Query: 715 CMDFW 719
           C DFW
Sbjct: 599 CGDFW 603



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 214/415 (51%), Gaps = 36/415 (8%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI 73
           L+  C SL++ +QI    + S +      ++LI+F   S  ++ +  +R LF  +  P+I
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDI 94

Query: 74  FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133
            I+N++ RGYSR  +P E   L+  +L  GI+ P+N+TFP +L +CA   + + G Q+HC
Sbjct: 95  VIFNSMARGYSRFTNPLEVFSLFVEILEDGIL-PDNYTFPSLLKACAVAKALEEGRQLHC 153

Query: 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193
             +K GL+ ++++   LI+ Y+    +++A  VF+  +   +V YN +I GYA+   P  
Sbjct: 154 LSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNE 213

Query: 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253
           AL LFR+MQ   ++P+  T +++ S+C  L    +GK  H    K+  C    + + TA+
Sbjct: 214 ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFC--KYVKVNTAL 271

Query: 254 INMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSW 313
           I+M+AKCG ++ A  +F  M   K T AWS+MI  Y   GK E++  +F+          
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRY-KDTQAWSAMIVAYANHGKAEKSMLMFE---------- 320

Query: 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373
                                +M S  + PDE+T + +L AC   G ++ G++   Q + 
Sbjct: 321 ---------------------RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVS 359

Query: 374 NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
                 +I    +++D+ ++ G+++ A     K+P +  T  L+  +++  + H 
Sbjct: 360 KFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPIS-PTPMLWRILLAACSSHN 413



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 154/301 (51%), Gaps = 9/301 (2%)

Query: 13  ALLESC---KSLKQALQIHGQIVHSGLNHHI-SSSQLISFFALSGCKNGLFRSRILFSQI 68
           +LL++C   K+L++  Q+H   +  GL+ ++     LI+ +  + C++ +  +R +F +I
Sbjct: 134 SLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMY--TECED-VDSARCVFDRI 190

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
             P +  +N ++ GY+R + P EAL L+  M  K  + PN  T   VL+SCA L S   G
Sbjct: 191 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGK-YLKPNEITLLSVLSSCALLGSLDLG 249

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
             IH +  K      + +  ALI  ++  G +++A  +FE    +D  +++ +I  YA  
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
            +   ++ +F +M+   +QPD  TF+ + +AC+       G+++ + +    G V S + 
Sbjct: 310 GKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS-IK 368

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
              +++++ ++ G +  A      + +S +   W  +++  +    ++ A ++ +++ + 
Sbjct: 369 HYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFEL 428

Query: 309 D 309
           D
Sbjct: 429 D 429


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/392 (50%), Positives = 267/392 (68%), Gaps = 4/392 (1%)

Query: 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388
            L LF +M+   I  +EVT+VA++ AC  LGAL  G   H  Y+       N F+ TA+I
Sbjct: 134 VLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHV-YVLKHNLKLNHFVGTALI 192

Query: 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448
           DMY+KCG +D A  +F ++P   +    +N++I G A HG G  ++ +F++M L GL PD
Sbjct: 193 DMYSKCGCLDLACQLFDQLPH--RDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPD 250

Query: 449 GVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507
            VT V  +C+CSH GLVEEG   FESM   YG++P++EHYGC+VDLL R GRL EA   +
Sbjct: 251 DVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERV 310

Query: 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567
            +MP   N+VIWR+LL A R+H N +IGE+  + L+ LEP+   +YVLLSNM A   RW+
Sbjct: 311 LNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWD 370

Query: 568 EARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627
           + ++VRKLM D GI K PG S +E  G +H FL   K+HP++KEI L L++M+ +L   G
Sbjct: 371 DVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYG 430

Query: 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFK 687
           + P T++V+FD++EEEKE  +SYHSE+LA+AF LI S     IRI KNLR+CGDCH + K
Sbjct: 431 HKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSK 490

Query: 688 LLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
           L+S+IY REI+VRD  RFH FK+G CSC D+W
Sbjct: 491 LISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 140/347 (40%), Gaps = 63/347 (18%)

Query: 12  LALLESCKSLKQALQIHGQIVHSGLNHH--------ISSSQLISFFALSGCKNGLFRSRI 63
           L LLE CK+L    Q+H  ++ +GL  H        + SS ++   ALS           
Sbjct: 13  LQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALS----------- 61

Query: 64  LFSQIDNPNIFIWNTLMRGYSR-SDSPQEALVLYTSMLSKGIVSPNNFTFP--------- 113
           +F+ I NP IF++NTL+   +        A  LY+ +L+   + PN FTFP         
Sbjct: 62  IFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQ 121

Query: 114 ---------------------------------FVLNSCARLSSFKSGCQIHCHIIKFGL 140
                                             ++++CA L +   G   H +++K  L
Sbjct: 122 PWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNL 181

Query: 141 EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRK 200
           + + F+  ALI  YS  G ++ A ++F+    RD + YN +I G+A       AL LF+K
Sbjct: 182 KLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKK 241

Query: 201 MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260
           M    + PD  T V    +C+ +     G      + +  G V   +     ++++  + 
Sbjct: 242 MTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYG-VEPKLEHYGCLVDLLGRA 300

Query: 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307
           G +  AE     M M  +   W S++      G +E    +   + Q
Sbjct: 301 GRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQ 347



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 160/379 (42%), Gaps = 87/379 (22%)

Query: 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFD-------LFIRNALI--HFYSIFGYINNA-- 163
           +L  C  L + K   Q+H H+I  GL F        L I + ++  H  SIF +I N   
Sbjct: 15  LLEKCKTLDTLK---QVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTI 71

Query: 164 ---------------HKVFEGSLARDLVSYNTL-INGYA--QVKEPC------------- 192
                          H     SL   ++++ TL  NG+    + + C             
Sbjct: 72  FLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDIFLI 131

Query: 193 -PALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKT 251
              L LF +MQ S I+ +  T VA+ SAC EL     G   H  V K+   +  N  + T
Sbjct: 132 KSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKH--NLKLNHFVGT 189

Query: 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311
           A+I+MY+KCG +++A                                 QLFDQ+  RD +
Sbjct: 190 ALIDMYSKCGCLDLA--------------------------------CQLFDQLPHRDTL 217

Query: 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371
            + AMI G++  G   QAL+LF KM   G+ PD+VT+V  + +C  +G ++ G  + +  
Sbjct: 218 CYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESM 277

Query: 372 IENVVFGRNIFLTT--AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            E  V+G    L     ++D+  + G +  A      +P     V ++ S++     HG 
Sbjct: 278 KE--VYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAV-IWRSLLGAARVHGN 334

Query: 430 GETSIAVFREMELMGLKPD 448
            E    V +   L+ L+P+
Sbjct: 335 LEIGEVVLK--HLIQLEPE 351


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/771 (30%), Positives = 405/771 (52%), Gaps = 83/771 (10%)

Query: 24  ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY 83
            L IHG ++  GL++  +     S      C +  F ++ LF ++   +   WN ++   
Sbjct: 6   GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANK-LFDEMPKRDDLAWNEIVMVN 64

Query: 84  SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143
            RS + ++A+ L+  M   G  + ++ T   +L  C+    F  G QIH ++++ GLE +
Sbjct: 65  LRSGNWEKAVELFREMQFSGAKAYDS-TMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESN 123

Query: 144 LFIRNALIHFYSIFGYINNAHKVFEG---------------------------------- 169
           + + N+LI  YS  G +  + KVF                                    
Sbjct: 124 VSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEI 183

Query: 170 -SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228
             L  D+V++N+L++GYA       A+ + ++MQ + ++P   +  ++  A  E    ++
Sbjct: 184 CGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKL 243

Query: 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--------------- 273
           GK  H  + +N   +  ++ ++T +I+MY K G +  A  VF  M               
Sbjct: 244 GKAIHGYILRNQ--LWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGL 301

Query: 274 -------------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR----DL 310
                              G+      W+S+ SGY   GK E+A  +  +M ++    ++
Sbjct: 302 SYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNV 361

Query: 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370
           VSWTA+ SG S+ G F  AL++F KM+  G+ P+  TM  +L+    L  L  GK +H  
Sbjct: 362 VSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGF 421

Query: 371 YI-ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429
            + +N++   + ++ TA++DMY K G + +A+ +F+ I KN K+++ +N ++ G A  G 
Sbjct: 422 CLRKNLIC--DAYVATALVDMYGKSGDLQSAIEIFWGI-KN-KSLASWNCMLMGYAMFGR 477

Query: 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYG 488
           GE  IA F  M   G++PD +TF +VL  C + GLV+EG ++F+ M + YGI P +EH  
Sbjct: 478 GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCS 537

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548
           CMVDLL R G LDEA+  IQ+M    ++ IW A L++C++HR+ ++ EIA ++L  LEP 
Sbjct: 538 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPH 597

Query: 549 HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQ 608
           + A+Y+++ N+ +   RWE+  ++R LM ++ ++    WS+I+ + T+H F A  K+HP 
Sbjct: 598 NSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPD 657

Query: 609 TKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKE 668
             +I   L  +  ++K +GYVP+T  +  D+ + EKE ++  H+EKLA+ +GLI  +   
Sbjct: 658 EGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLA 717

Query: 669 TIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMDFW 719
            IR+ KN  IC D H   K +S +  REI++++  R H F+ G CSC D W
Sbjct: 718 PIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/678 (35%), Positives = 359/678 (52%), Gaps = 42/678 (6%)

Query: 43  SQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSK 102
           S LI  ++L G    +  +R +F  I   +   W  ++  YS +D P++AL  ++ M   
Sbjct: 189 SSLIDAYSLCG---AVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMA 245

Query: 103 GIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162
           G   PN F    VL +   LSS   G  IH   +K   + +  +  AL+  Y+  GYI +
Sbjct: 246 G-AKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIED 304

Query: 163 AHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222
           A  VFE     D++ ++ LI+ YAQ  +   A  +F +M  S + P+ F+   +  AC  
Sbjct: 305 ARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACAN 364

Query: 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAW 282
           +    +G+Q H +V K LG   S + +  A++++YAKC  M                   
Sbjct: 365 VAFLDLGQQIHNLVIK-LG-YESELFVGNALMDVYAKCRNM------------------- 403

Query: 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH 342
                        E + ++F  +   + VSW  +I GY Q G    AL +F +M +  + 
Sbjct: 404 -------------ENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVL 450

Query: 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402
             +VT  +VLRAC    ++    ++H   IE   F  +  +  ++ID YAKCG I  AL 
Sbjct: 451 STQVTFSSVLRACANTASIKHTVQIHS-LIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK 509

Query: 403 VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462
           VF  I +    V  +N+IISG A HG    ++ +F  M     KP+ VTFV +L  C   
Sbjct: 510 VFESIIQC--DVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGST 567

Query: 463 GLVEEGKQFFESM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521
           GLV +G   F SM +++ IKP M+HY C+V LL R GRL++A   I  +P   + ++WRA
Sbjct: 568 GLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRA 627

Query: 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581
           LL++C +H+N  +G+ + +K+L++EP     YVLLSNM A     ++   +RK M + G+
Sbjct: 628 LLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGV 687

Query: 582 QKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDE 641
           +K  G S++E  G +H F      HP  + I  ML+ + +K    GYVP+   V+ DVDE
Sbjct: 688 KKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDE 747

Query: 642 EEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRD 701
           EEK  ++  HSE+LALA+GL  +     IRI KNLR C DCH  FK++S+I +REI+VRD
Sbjct: 748 EEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRD 807

Query: 702 AIRFHLFKKGNCSCMDFW 719
             RFH F +G CSC D+W
Sbjct: 808 INRFHHFDEGICSCGDYW 825



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/524 (25%), Positives = 250/524 (47%), Gaps = 46/524 (8%)

Query: 14  LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFA-----LSGCKNGLFRSRILFSQI 68
           LL+ C +   A    G+ VH+ +      +QL +F A     L      L  +R LF  +
Sbjct: 53  LLQRCIARGDARA--GRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGM 110

Query: 69  DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSG 128
              N+  + TL++GY+     +EA  L+  +  +G    N+F    +L     + +    
Sbjct: 111 PERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGH-EVNHFVLTTILKVLVAMDAPGLT 169

Query: 129 CQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQV 188
           C IH    K G + + F+ ++LI  YS+ G +++A  VF+G + +D V++  +++ Y++ 
Sbjct: 170 CCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNML 248
             P  AL  F KM+ +  +P+ F   ++  A   L+   +GK  H    K L    +   
Sbjct: 230 DIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTL--CDTEPH 287

Query: 249 LKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308
           +  A+++MYAKCG                                 IE AR +F+ +   
Sbjct: 288 VGGALLDMYAKCGY--------------------------------IEDARTVFEIIPHD 315

Query: 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368
           D++ W+ +IS Y+Q     QA E+F +M    + P+E ++  VL+AC  +  LD G+++H
Sbjct: 316 DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIH 375

Query: 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428
              I+ + +   +F+  A++D+YAKC +++ +L +F  + ++   VS +N+II G  Q G
Sbjct: 376 NLVIK-LGYESELFVGNALMDVYAKCRNMENSLEIFRSL-RDANEVS-WNTIIVGYCQSG 432

Query: 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488
             E +++VF+EM    +    VTF +VL AC++   ++   Q    +             
Sbjct: 433 FAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCN 492

Query: 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA 532
            ++D  A+ G + +A  + +S+    + V W A+++   LH  A
Sbjct: 493 SLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRA 535


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,572,610,456
Number of Sequences: 23463169
Number of extensions: 424769675
Number of successful extensions: 1565355
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10289
Number of HSP's successfully gapped in prelim test: 2148
Number of HSP's that attempted gapping in prelim test: 1303979
Number of HSP's gapped (non-prelim): 67177
length of query: 719
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 569
effective length of database: 8,839,720,017
effective search space: 5029800689673
effective search space used: 5029800689673
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 81 (35.8 bits)