Query 047480
Match_columns 719
No_of_seqs 782 out of 4678
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-132 5E-137 1149.4 80.7 703 3-717 81-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-123 4E-128 1049.8 70.9 612 70-719 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.1E-73 6.7E-78 656.9 60.2 668 10-714 53-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.1E-66 4.5E-71 587.2 57.4 505 39-586 370-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.7E-65 1.9E-69 572.8 49.6 439 3-482 118-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.7E-63 5.9E-68 561.9 55.8 494 11-545 373-909 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-32 8.9E-37 321.2 62.1 551 14-581 304-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-32 1.3E-36 319.8 63.1 544 19-579 275-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.2E-32 4.8E-37 226.9 8.2 106 586-709 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 4E-23 8.8E-28 245.3 57.8 543 20-580 43-701 (1157)
11 PRK11447 cellulose synthase su 99.9 1.8E-21 3.9E-26 231.3 61.5 547 14-578 121-739 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 2.3E-19 5.1E-24 203.5 58.3 537 19-579 58-740 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 5.6E-21 1.2E-25 191.8 36.5 467 60-575 36-515 (966)
14 PRK09782 bacteriophage N4 rece 99.9 3.8E-19 8.1E-24 201.8 55.3 500 56-580 58-707 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 8.4E-19 1.8E-23 176.3 32.8 361 210-581 116-487 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.4E-17 7.4E-22 182.9 44.6 420 147-579 130-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 1E-18 2.2E-23 185.3 28.9 310 80-465 42-363 (389)
18 PRK11788 tetratricopeptide rep 99.8 2.3E-18 5E-23 182.6 29.5 294 288-586 44-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 3.1E-16 6.8E-21 166.5 42.9 543 20-581 145-747 (1018)
20 KOG2002 TPR-containing nuclear 99.8 6.7E-16 1.4E-20 164.1 45.0 559 7-581 161-800 (1018)
21 TIGR00990 3a0801s09 mitochondr 99.8 5.1E-16 1.1E-20 173.5 41.6 253 292-550 307-576 (615)
22 PRK10049 pgaA outer membrane p 99.8 1.3E-15 2.7E-20 173.5 43.6 403 142-580 13-457 (765)
23 PRK15174 Vi polysaccharide exp 99.8 4.7E-16 1E-20 173.1 39.2 352 156-550 17-386 (656)
24 PRK10049 pgaA outer membrane p 99.8 6.3E-15 1.4E-19 167.8 46.9 407 112-553 18-464 (765)
25 PRK15174 Vi polysaccharide exp 99.8 2.1E-15 4.6E-20 167.9 41.4 315 149-510 47-378 (656)
26 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3E-19 161.6 45.6 435 119-579 44-513 (822)
27 PRK14574 hmsH outer membrane p 99.7 2.1E-13 4.7E-18 152.2 46.9 451 76-553 38-521 (822)
28 KOG0495 HAT repeat protein [RN 99.7 4.6E-12 1E-16 129.3 51.1 497 72-592 379-891 (913)
29 KOG4422 Uncharacterized conser 99.7 2.8E-12 6.1E-17 124.5 39.4 244 72-376 206-463 (625)
30 KOG2003 TPR repeat-containing 99.6 1.2E-13 2.5E-18 134.6 26.2 469 78-565 206-709 (840)
31 KOG2076 RNA polymerase III tra 99.6 4.9E-11 1.1E-15 126.9 46.7 543 14-561 148-785 (895)
32 KOG4422 Uncharacterized conser 99.6 9.2E-12 2E-16 121.0 36.7 416 74-542 117-587 (625)
33 KOG1915 Cell cycle control pro 99.6 1.8E-10 3.9E-15 113.6 42.6 496 73-577 73-623 (677)
34 KOG0495 HAT repeat protein [RN 99.6 1.3E-09 2.8E-14 111.8 47.9 512 20-558 361-893 (913)
35 KOG2076 RNA polymerase III tra 99.5 1E-11 2.2E-16 132.0 31.6 352 221-590 150-523 (895)
36 KOG2003 TPR repeat-containing 99.5 2.2E-12 4.8E-17 125.8 24.5 278 220-506 429-715 (840)
37 PF13429 TPR_15: Tetratricopep 99.5 2.3E-14 4.9E-19 143.9 11.1 256 317-577 15-275 (280)
38 KOG0547 Translocase of outer m 99.5 8E-11 1.7E-15 116.7 32.3 185 389-577 368-564 (606)
39 KOG1126 DNA-binding cell divis 99.5 1.4E-11 2.9E-16 127.1 22.8 278 294-580 334-621 (638)
40 KOG1915 Cell cycle control pro 99.4 3.6E-09 7.8E-14 104.6 36.7 405 143-587 72-508 (677)
41 PRK10747 putative protoheme IX 99.4 4.6E-10 1E-14 118.1 32.1 247 321-577 129-388 (398)
42 KOG4318 Bicoid mRNA stability 99.4 1.8E-08 3.9E-13 107.2 42.9 82 173-259 202-283 (1088)
43 PRK10747 putative protoheme IX 99.4 2.1E-10 4.5E-15 120.7 29.0 281 259-546 96-391 (398)
44 KOG1126 DNA-binding cell divis 99.4 2.7E-11 5.8E-16 125.0 21.0 244 325-579 334-586 (638)
45 PF13429 TPR_15: Tetratricopep 99.4 7.4E-13 1.6E-17 132.9 9.5 251 286-544 15-276 (280)
46 KOG1155 Anaphase-promoting com 99.4 2.1E-09 4.6E-14 106.1 32.8 155 317-475 337-492 (559)
47 TIGR00540 hemY_coli hemY prote 99.4 1.2E-09 2.7E-14 115.5 32.7 252 286-543 125-397 (409)
48 KOG1155 Anaphase-promoting com 99.4 7.2E-09 1.6E-13 102.5 34.9 342 220-577 174-534 (559)
49 TIGR00540 hemY_coli hemY prote 99.4 5.5E-10 1.2E-14 118.2 29.2 284 187-510 96-396 (409)
50 KOG4318 Bicoid mRNA stability 99.4 4.7E-09 1E-13 111.4 35.0 473 94-589 11-603 (1088)
51 KOG2047 mRNA splicing factor [ 99.4 4E-08 8.6E-13 101.0 39.9 509 39-579 102-687 (835)
52 KOG1173 Anaphase-promoting com 99.3 1.3E-08 2.7E-13 103.4 34.1 264 309-578 243-517 (611)
53 TIGR02521 type_IV_pilW type IV 99.3 3.8E-10 8.3E-15 110.0 22.0 198 380-578 30-231 (234)
54 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 4E-16 86.0 6.5 50 412-461 1-50 (50)
55 COG3071 HemY Uncharacterized e 99.2 2.5E-08 5.3E-13 97.4 29.8 294 180-543 87-388 (400)
56 KOG1173 Anaphase-promoting com 99.2 1.1E-07 2.4E-12 96.7 35.1 278 243-526 240-532 (611)
57 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 4E-16 86.0 5.9 50 173-222 1-50 (50)
58 KOG1174 Anaphase-promoting com 99.2 7.1E-08 1.5E-12 94.1 32.1 271 274-550 227-505 (564)
59 KOG4162 Predicted calmodulin-b 99.2 2.1E-07 4.7E-12 98.1 38.0 427 139-580 318-784 (799)
60 KOG3785 Uncharacterized conser 99.2 3.5E-08 7.5E-13 94.2 29.2 439 56-548 36-493 (557)
61 COG3071 HemY Uncharacterized e 99.2 3.1E-08 6.7E-13 96.7 29.1 302 77-448 86-395 (400)
62 COG2956 Predicted N-acetylgluc 99.2 2E-08 4.2E-13 95.1 25.1 251 323-577 48-309 (389)
63 PRK12370 invasion protein regu 99.2 4.8E-09 1.1E-13 115.3 24.7 246 325-580 276-536 (553)
64 KOG1840 Kinesin light chain [C 99.2 4.1E-08 8.8E-13 102.9 29.4 233 345-577 199-477 (508)
65 COG2956 Predicted N-acetylgluc 99.2 2.6E-08 5.7E-13 94.2 25.0 280 86-407 48-344 (389)
66 KOG2376 Signal recognition par 99.1 4.3E-07 9.3E-12 93.0 34.6 438 80-575 19-516 (652)
67 KOG2047 mRNA splicing factor [ 99.1 3.4E-06 7.3E-11 87.3 41.1 507 20-536 117-714 (835)
68 KOG0547 Translocase of outer m 99.1 5.3E-08 1.2E-12 97.1 26.9 86 75-165 117-204 (606)
69 PRK11189 lipoprotein NlpI; Pro 99.1 7.9E-09 1.7E-13 104.0 21.7 214 360-581 41-267 (296)
70 TIGR02521 type_IV_pilW type IV 99.1 1.6E-08 3.5E-13 98.5 21.9 192 279-510 31-229 (234)
71 KOG1840 Kinesin light chain [C 99.1 1.5E-07 3.2E-12 98.8 27.7 201 315-544 246-478 (508)
72 KOG1129 TPR repeat-containing 99.0 9.6E-09 2.1E-13 97.0 16.4 195 383-580 258-459 (478)
73 KOG0985 Vesicle coat protein c 99.0 7.6E-06 1.6E-10 88.6 39.4 511 23-576 590-1246(1666)
74 PRK12370 invasion protein regu 99.0 2.5E-08 5.4E-13 109.7 22.0 212 360-579 276-502 (553)
75 KOG3785 Uncharacterized conser 99.0 3.1E-06 6.7E-11 81.2 32.1 190 386-581 290-492 (557)
76 KOG1156 N-terminal acetyltrans 99.0 1.3E-05 2.9E-10 83.3 38.1 254 11-306 11-281 (700)
77 KOG1129 TPR repeat-containing 99.0 1.2E-08 2.6E-13 96.3 14.9 234 314-552 227-465 (478)
78 KOG3616 Selective LIM binding 99.0 1.3E-06 2.8E-11 91.1 30.6 399 118-575 499-933 (1636)
79 COG3063 PilF Tfp pilus assembl 99.0 4.2E-08 9.2E-13 88.8 17.2 162 416-581 37-204 (250)
80 KOG1127 TPR repeat-containing 99.0 3.7E-06 7.9E-11 91.2 34.2 544 24-578 475-1103(1238)
81 KOG3616 Selective LIM binding 99.0 8.4E-06 1.8E-10 85.3 34.9 218 154-407 716-934 (1636)
82 KOG1156 N-terminal acetyltrans 98.9 4.5E-06 9.7E-11 86.7 31.4 83 121-204 19-104 (700)
83 KOG0985 Vesicle coat protein c 98.9 1.4E-05 3.1E-10 86.6 35.5 348 197-577 969-1368(1666)
84 PRK11189 lipoprotein NlpI; Pro 98.9 7.8E-07 1.7E-11 89.5 25.2 229 324-560 40-281 (296)
85 KOG3617 WD40 and TPR repeat-co 98.9 0.00019 4E-09 76.7 41.9 48 531-579 1306-1359(1416)
86 KOG1174 Anaphase-promoting com 98.9 6.4E-05 1.4E-09 74.1 35.6 298 274-579 189-500 (564)
87 KOG4162 Predicted calmodulin-b 98.9 8.3E-06 1.8E-10 86.4 31.9 442 39-551 323-789 (799)
88 COG3063 PilF Tfp pilus assembl 98.8 1.1E-06 2.3E-11 79.9 20.8 169 381-551 69-242 (250)
89 PF12569 NARP1: NMDA receptor- 98.8 3.7E-05 7.9E-10 82.1 36.0 280 48-338 13-333 (517)
90 KOG2376 Signal recognition par 98.8 0.00021 4.5E-09 73.9 39.1 168 20-201 27-201 (652)
91 KOG1125 TPR repeat-containing 98.8 1.6E-07 3.5E-12 96.0 15.9 220 356-579 296-527 (579)
92 PF12569 NARP1: NMDA receptor- 98.8 8.8E-06 1.9E-10 86.8 28.6 281 255-544 12-333 (517)
93 PF04733 Coatomer_E: Coatomer 98.7 4.6E-07 9.9E-12 89.8 17.5 244 321-579 12-265 (290)
94 KOG1127 TPR repeat-containing 98.7 2.4E-05 5.2E-10 85.1 30.7 174 399-576 801-993 (1238)
95 cd05804 StaR_like StaR_like; a 98.7 1.8E-05 3.8E-10 82.8 30.1 296 281-580 8-337 (355)
96 KOG0548 Molecular co-chaperone 98.7 9E-06 1.9E-10 82.9 25.2 437 56-562 16-472 (539)
97 PRK04841 transcriptional regul 98.7 0.0014 3.1E-08 77.8 46.6 83 287-369 460-555 (903)
98 KOG4340 Uncharacterized conser 98.7 0.00011 2.3E-09 69.3 28.6 384 147-579 13-443 (459)
99 KOG0624 dsRNA-activated protei 98.6 8E-05 1.7E-09 71.6 27.9 53 526-578 317-369 (504)
100 KOG0548 Molecular co-chaperone 98.6 1E-05 2.2E-10 82.5 23.2 432 80-580 9-456 (539)
101 KOG1914 mRNA cleavage and poly 98.6 0.00071 1.5E-08 69.3 35.7 65 72-139 19-83 (656)
102 KOG3617 WD40 and TPR repeat-co 98.6 8.3E-05 1.8E-09 79.2 29.8 236 142-407 724-993 (1416)
103 cd05804 StaR_like StaR_like; a 98.6 0.00025 5.4E-09 74.1 32.7 91 316-407 120-212 (355)
104 KOG4340 Uncharacterized conser 98.5 3.7E-05 7.9E-10 72.4 21.3 285 251-575 14-335 (459)
105 PF04733 Coatomer_E: Coatomer 98.5 5.3E-06 1.1E-10 82.3 17.1 224 315-550 40-270 (290)
106 KOG1070 rRNA processing protei 98.5 2.2E-05 4.8E-10 88.2 23.1 221 244-465 1455-1687(1710)
107 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.5E-12 58.2 4.4 33 274-306 2-34 (34)
108 KOG1128 Uncharacterized conser 98.5 1.4E-05 3E-10 84.3 19.5 219 274-510 393-613 (777)
109 TIGR03302 OM_YfiO outer membra 98.5 9.7E-06 2.1E-10 79.1 17.7 182 379-579 31-232 (235)
110 PRK10370 formate-dependent nit 98.5 1.3E-05 2.8E-10 75.0 17.7 147 421-580 23-174 (198)
111 PRK04841 transcriptional regul 98.5 0.0062 1.3E-07 72.4 44.6 324 257-580 384-761 (903)
112 PF12854 PPR_1: PPR repeat 98.5 3E-07 6.6E-12 57.8 4.4 32 479-510 2-33 (34)
113 PRK15359 type III secretion sy 98.5 4.5E-06 9.8E-11 73.8 13.6 122 435-561 14-137 (144)
114 KOG0624 dsRNA-activated protei 98.5 0.00022 4.9E-09 68.6 25.4 335 178-583 41-398 (504)
115 KOG1125 TPR repeat-containing 98.4 1.1E-05 2.4E-10 83.0 17.6 197 276-476 316-525 (579)
116 PLN02789 farnesyltranstransfer 98.4 6.3E-05 1.4E-09 75.7 22.7 165 396-563 87-268 (320)
117 KOG1128 Uncharacterized conser 98.4 1.2E-05 2.6E-10 84.7 17.1 212 350-579 403-616 (777)
118 PRK15179 Vi polysaccharide bio 98.4 2.2E-05 4.8E-10 87.0 19.6 140 411-554 83-226 (694)
119 PRK15359 type III secretion sy 98.4 5.8E-06 1.3E-10 73.1 11.8 107 470-580 14-122 (144)
120 PRK15363 pathogenicity island 98.3 9.5E-06 2.1E-10 70.4 12.4 118 484-624 35-154 (157)
121 KOG1070 rRNA processing protei 98.3 4.2E-05 9.2E-10 86.1 20.0 200 378-582 1455-1666(1710)
122 TIGR03302 OM_YfiO outer membra 98.3 4.1E-05 8.8E-10 74.7 16.9 184 344-547 32-234 (235)
123 COG5010 TadD Flp pilus assembl 98.3 8.9E-05 1.9E-09 69.2 17.6 149 388-538 73-224 (257)
124 COG5010 TadD Flp pilus assembl 98.2 8.1E-05 1.8E-09 69.5 15.9 134 446-580 63-198 (257)
125 PRK10370 formate-dependent nit 98.2 0.00016 3.6E-09 67.6 18.1 154 388-553 23-181 (198)
126 PRK14720 transcript cleavage f 98.1 0.00042 9.1E-09 77.8 23.0 234 278-561 30-268 (906)
127 PRK15179 Vi polysaccharide bio 98.1 0.00032 7E-09 78.0 22.1 144 377-523 82-229 (694)
128 PLN02789 farnesyltranstransfer 98.1 0.00019 4E-09 72.4 18.3 189 387-578 43-249 (320)
129 KOG1914 mRNA cleavage and poly 98.1 0.016 3.5E-07 59.8 36.3 177 398-577 348-537 (656)
130 TIGR00756 PPR pentatricopeptid 98.1 3.5E-06 7.7E-11 53.9 3.7 35 176-210 1-35 (35)
131 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.3E-10 52.8 4.5 35 415-449 1-35 (35)
132 TIGR02552 LcrH_SycD type III s 98.1 5.4E-05 1.2E-09 66.4 11.8 97 484-580 17-115 (135)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.4E-09 73.5 16.6 123 451-577 171-295 (395)
134 KOG2053 Mitochondrial inherita 98.0 0.039 8.5E-07 60.6 36.5 486 20-522 24-619 (932)
135 COG4783 Putative Zn-dependent 98.0 0.0022 4.7E-08 65.4 22.5 143 417-580 309-455 (484)
136 COG4783 Putative Zn-dependent 98.0 0.00079 1.7E-08 68.5 19.2 179 396-578 252-436 (484)
137 PF13812 PPR_3: Pentatricopept 97.9 1.2E-05 2.6E-10 50.9 3.8 34 175-208 1-34 (34)
138 KOG3081 Vesicle coat complex C 97.9 0.0055 1.2E-07 57.5 22.4 70 499-568 188-259 (299)
139 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 50.2 4.2 33 415-447 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00039 8.5E-09 71.4 15.4 127 382-514 170-298 (395)
141 TIGR02552 LcrH_SycD type III s 97.9 0.00041 8.9E-09 60.8 13.5 113 436-551 5-120 (135)
142 KOG3081 Vesicle coat complex C 97.8 0.0081 1.8E-07 56.4 21.2 155 388-550 115-276 (299)
143 KOG3060 Uncharacterized conser 97.8 0.0035 7.6E-08 58.3 18.7 163 390-554 61-229 (289)
144 PRK14720 transcript cleavage f 97.8 0.0045 9.8E-08 69.8 23.4 120 276-425 147-268 (906)
145 cd00189 TPR Tetratricopeptide 97.8 0.0003 6.4E-09 56.8 10.4 93 487-579 3-97 (100)
146 PF09976 TPR_21: Tetratricopep 97.8 0.0014 3.1E-08 58.1 15.3 82 427-510 24-111 (145)
147 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.2E-10 47.4 3.0 31 176-206 1-31 (31)
148 KOG3060 Uncharacterized conser 97.7 0.0031 6.8E-08 58.6 16.2 185 394-581 25-222 (289)
149 PF01535 PPR: PPR repeat; Int 97.7 5.8E-05 1.3E-09 46.5 3.6 31 415-445 1-31 (31)
150 PF12895 Apc3: Anaphase-promot 97.7 6.1E-05 1.3E-09 59.7 4.6 78 497-575 2-83 (84)
151 KOG2041 WD40 repeat protein [G 97.7 0.13 2.7E-06 54.9 29.5 292 157-510 747-1047(1189)
152 PF13414 TPR_11: TPR repeat; P 97.6 0.00012 2.7E-09 55.3 5.9 64 515-578 2-66 (69)
153 PLN03088 SGT1, suppressor of 97.6 0.00065 1.4E-08 70.2 13.0 85 494-578 12-98 (356)
154 KOG0553 TPR repeat-containing 97.6 0.00034 7.4E-09 66.7 9.7 93 458-552 90-185 (304)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00075 1.6E-08 57.5 10.9 93 487-579 5-105 (119)
156 PF09976 TPR_21: Tetratricopep 97.6 0.0025 5.3E-08 56.6 14.4 123 451-576 14-144 (145)
157 KOG2053 Mitochondrial inherita 97.6 0.21 4.6E-06 55.1 39.5 495 56-577 23-606 (932)
158 PF13432 TPR_16: Tetratricopep 97.5 0.00028 6.1E-09 52.6 6.3 58 523-580 4-61 (65)
159 PF07079 DUF1347: Protein of u 97.5 0.16 3.4E-06 51.7 36.0 73 504-577 444-522 (549)
160 KOG0550 Molecular chaperone (D 97.5 0.0027 5.8E-08 63.2 13.6 161 415-580 169-351 (486)
161 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0021 4.5E-08 54.7 11.6 101 453-553 6-113 (119)
162 KOG0553 TPR repeat-containing 97.4 0.0012 2.5E-08 63.2 10.4 99 422-524 89-190 (304)
163 PRK10153 DNA-binding transcrip 97.4 0.0036 7.8E-08 67.6 15.6 62 517-579 421-482 (517)
164 PRK02603 photosystem I assembl 97.4 0.0032 7E-08 57.7 13.0 132 412-565 33-166 (172)
165 PRK02603 photosystem I assembl 97.3 0.0023 5.1E-08 58.7 11.4 81 485-565 36-121 (172)
166 COG3898 Uncharacterized membra 97.3 0.2 4.4E-06 49.9 26.4 274 292-579 97-392 (531)
167 PLN03088 SGT1, suppressor of 97.3 0.0038 8.2E-08 64.5 13.5 101 459-560 12-114 (356)
168 CHL00033 ycf3 photosystem I as 97.3 0.0023 5E-08 58.5 10.6 93 484-576 35-139 (168)
169 PRK15331 chaperone protein Sic 97.3 0.0021 4.6E-08 56.3 9.5 89 490-578 43-133 (165)
170 COG4235 Cytochrome c biogenesi 97.3 0.0041 9E-08 59.9 12.2 105 481-585 153-262 (287)
171 PF05843 Suf: Suppressor of fo 97.3 0.0072 1.6E-07 60.2 14.5 134 415-550 2-141 (280)
172 KOG1538 Uncharacterized conser 97.2 0.019 4.2E-07 60.3 17.4 241 73-415 556-807 (1081)
173 PF04840 Vps16_C: Vps16, C-ter 97.2 0.28 6E-06 49.5 30.9 121 385-526 181-301 (319)
174 cd00189 TPR Tetratricopeptide 97.2 0.0035 7.7E-08 50.2 10.3 89 417-508 3-92 (100)
175 PF14559 TPR_19: Tetratricopep 97.2 0.0005 1.1E-08 51.8 4.5 53 527-579 2-54 (68)
176 PF13371 TPR_9: Tetratricopept 97.2 0.00093 2E-08 51.1 6.0 57 524-580 3-59 (73)
177 COG3898 Uncharacterized membra 97.2 0.24 5.2E-06 49.4 23.3 255 313-576 85-355 (531)
178 PF13432 TPR_16: Tetratricopep 97.2 0.00089 1.9E-08 49.8 5.5 61 490-550 3-65 (65)
179 PF13431 TPR_17: Tetratricopep 97.2 0.0003 6.5E-09 44.1 2.4 33 539-571 2-34 (34)
180 CHL00033 ycf3 photosystem I as 97.2 0.019 4.2E-07 52.4 15.2 109 414-549 35-153 (168)
181 PRK10153 DNA-binding transcrip 97.1 0.016 3.4E-07 62.7 16.5 140 411-552 334-489 (517)
182 PF07079 DUF1347: Protein of u 97.1 0.42 9.1E-06 48.8 38.5 456 14-521 15-530 (549)
183 PF14938 SNAP: Soluble NSF att 97.1 0.16 3.6E-06 50.7 22.4 96 416-511 157-264 (282)
184 KOG1130 Predicted G-alpha GTPa 97.1 0.0041 8.9E-08 61.6 9.9 259 319-578 26-343 (639)
185 COG4700 Uncharacterized protei 97.1 0.077 1.7E-06 47.1 16.6 131 445-578 85-221 (251)
186 PRK15363 pathogenicity island 97.0 0.024 5.3E-07 49.5 13.5 91 385-477 39-131 (157)
187 PF14938 SNAP: Soluble NSF att 97.0 0.09 1.9E-06 52.6 19.8 123 287-409 122-265 (282)
188 KOG1538 Uncharacterized conser 97.0 0.07 1.5E-06 56.3 18.4 69 326-407 616-684 (1081)
189 PF06239 ECSIT: Evolutionarily 97.0 0.0069 1.5E-07 55.5 9.9 99 401-499 34-153 (228)
190 PF05843 Suf: Suppressor of fo 96.9 0.022 4.8E-07 56.7 14.4 139 312-455 3-146 (280)
191 PF08579 RPM2: Mitochondrial r 96.9 0.015 3.3E-07 47.1 10.3 79 418-496 29-116 (120)
192 PF12895 Apc3: Anaphase-promot 96.9 0.0015 3.3E-08 51.5 4.8 80 427-509 2-83 (84)
193 PF14559 TPR_19: Tetratricopep 96.9 0.0015 3.2E-08 49.2 4.4 61 461-522 3-64 (68)
194 PF04840 Vps16_C: Vps16, C-ter 96.9 0.61 1.3E-05 47.1 28.5 110 281-407 179-288 (319)
195 PRK10866 outer membrane biogen 96.8 0.19 4.1E-06 48.7 19.4 170 388-577 39-239 (243)
196 PF10037 MRP-S27: Mitochondria 96.8 0.011 2.3E-07 61.3 11.2 59 418-476 107-165 (429)
197 PF06239 ECSIT: Evolutionarily 96.7 0.019 4E-07 52.7 10.6 117 107-238 45-167 (228)
198 PF13414 TPR_11: TPR repeat; P 96.7 0.0038 8.2E-08 47.0 5.3 64 484-547 3-69 (69)
199 KOG2796 Uncharacterized conser 96.7 0.079 1.7E-06 49.8 14.5 140 312-454 179-324 (366)
200 PF10037 MRP-S27: Mitochondria 96.6 0.034 7.3E-07 57.8 13.3 121 341-462 62-186 (429)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.008 1.7E-07 61.7 8.5 64 515-578 74-140 (453)
202 PF12688 TPR_5: Tetratrico pep 96.6 0.028 6.1E-07 47.3 10.4 56 520-575 42-100 (120)
203 PRK10803 tol-pal system protei 96.6 0.016 3.4E-07 56.7 10.0 92 487-578 146-245 (263)
204 KOG2280 Vacuolar assembly/sort 96.5 1.6 3.5E-05 47.6 28.4 106 387-509 690-795 (829)
205 PF08579 RPM2: Mitochondrial r 96.5 0.029 6.2E-07 45.6 9.0 80 76-156 28-116 (120)
206 PF13428 TPR_14: Tetratricopep 96.4 0.0057 1.2E-07 41.1 4.1 42 517-558 2-43 (44)
207 PF13371 TPR_9: Tetratricopept 96.4 0.01 2.3E-07 45.2 6.1 64 491-554 2-67 (73)
208 PRK10866 outer membrane biogen 96.3 0.61 1.3E-05 45.2 19.5 66 72-140 31-100 (243)
209 KOG2796 Uncharacterized conser 96.3 0.21 4.6E-06 47.0 15.1 168 384-551 139-321 (366)
210 PF12688 TPR_5: Tetratrico pep 96.3 0.11 2.4E-06 43.8 12.1 92 316-407 7-101 (120)
211 COG4700 Uncharacterized protei 96.3 0.76 1.7E-05 41.1 17.3 125 379-507 87-216 (251)
212 PF03704 BTAD: Bacterial trans 96.1 0.1 2.2E-06 46.3 11.9 60 518-577 64-123 (146)
213 KOG0543 FKBP-type peptidyl-pro 96.1 0.048 1E-06 54.8 10.4 63 517-579 258-320 (397)
214 PF13281 DUF4071: Domain of un 96.1 0.58 1.2E-05 47.8 18.1 162 386-549 146-338 (374)
215 KOG2280 Vacuolar assembly/sort 96.1 3 6.4E-05 45.7 26.1 322 77-437 441-793 (829)
216 COG0457 NrfG FOG: TPR repeat [ 96.0 1.5 3.3E-05 41.6 25.7 196 381-579 59-265 (291)
217 KOG2041 WD40 repeat protein [G 96.0 3.1 6.6E-05 45.0 30.8 55 518-573 1021-1080(1189)
218 KOG0550 Molecular chaperone (D 95.8 2.5 5.5E-05 42.9 21.3 53 424-476 259-314 (486)
219 PRK10803 tol-pal system protei 95.8 0.14 3E-06 50.2 12.0 98 451-550 145-251 (263)
220 COG4235 Cytochrome c biogenesi 95.7 0.15 3.2E-06 49.5 11.6 110 411-523 153-267 (287)
221 PF13424 TPR_12: Tetratricopep 95.6 0.018 3.9E-07 44.5 4.3 61 518-578 7-74 (78)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.6 3.3 7.2E-05 42.5 30.2 445 39-529 42-548 (660)
223 PF09205 DUF1955: Domain of un 95.6 0.39 8.4E-06 40.2 11.7 65 518-582 88-152 (161)
224 KOG4555 TPR repeat-containing 95.5 0.12 2.6E-06 43.0 8.7 90 492-581 51-146 (175)
225 PF13525 YfiO: Outer membrane 95.4 0.71 1.5E-05 43.5 15.3 161 390-570 14-198 (203)
226 PRK11906 transcriptional regul 95.4 0.24 5.3E-06 51.2 12.6 63 515-577 337-399 (458)
227 KOG2066 Vacuolar assembly/sort 95.3 5.9 0.00013 43.7 22.6 148 254-409 363-533 (846)
228 KOG3941 Intermediate in Toll s 95.3 0.15 3.3E-06 48.5 9.7 112 399-510 52-185 (406)
229 PF13424 TPR_12: Tetratricopep 95.3 0.025 5.5E-07 43.7 4.1 59 486-544 7-74 (78)
230 KOG1130 Predicted G-alpha GTPa 95.2 0.13 2.9E-06 51.4 9.6 50 82-133 26-79 (639)
231 PF04184 ST7: ST7 protein; In 95.2 0.71 1.5E-05 48.0 14.9 151 428-589 182-334 (539)
232 PF13525 YfiO: Outer membrane 95.2 1.2 2.6E-05 41.9 16.0 59 78-139 10-72 (203)
233 PF13512 TPR_18: Tetratricopep 95.1 0.41 9E-06 41.2 11.1 89 491-579 17-128 (142)
234 PF12921 ATP13: Mitochondrial 94.9 0.22 4.8E-06 42.4 9.1 80 449-528 2-100 (126)
235 COG4105 ComL DNA uptake lipopr 94.9 2.9 6.2E-05 39.9 17.0 173 392-579 45-233 (254)
236 KOG1585 Protein required for f 94.8 1.7 3.6E-05 40.8 14.8 87 486-573 152-250 (308)
237 KOG1258 mRNA processing protei 94.8 7.1 0.00015 41.9 30.8 128 72-203 44-179 (577)
238 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.16 3.4E-06 52.5 9.0 62 484-545 75-141 (453)
239 PF03704 BTAD: Bacterial trans 94.7 0.27 5.9E-06 43.4 9.7 67 419-486 67-138 (146)
240 PRK11906 transcriptional regul 94.3 1.9 4.1E-05 44.9 15.6 144 430-575 274-432 (458)
241 KOG2610 Uncharacterized conser 94.3 1.1 2.5E-05 43.9 13.1 155 393-550 115-283 (491)
242 COG3118 Thioredoxin domain-con 94.3 1.7 3.7E-05 42.2 14.1 121 458-580 143-266 (304)
243 COG5107 RNA14 Pre-mRNA 3'-end 94.2 7.8 0.00017 39.9 33.1 442 59-550 26-536 (660)
244 PF12921 ATP13: Mitochondrial 94.0 0.66 1.4E-05 39.5 10.0 97 279-391 2-98 (126)
245 COG0457 NrfG FOG: TPR repeat [ 93.9 5.8 0.00013 37.4 25.4 199 346-548 60-268 (291)
246 PF10345 Cohesin_load: Cohesin 93.8 14 0.00031 41.5 28.5 123 40-169 31-164 (608)
247 PF08631 SPO22: Meiosis protei 93.8 7.9 0.00017 38.5 21.2 17 526-542 256-272 (278)
248 KOG0543 FKBP-type peptidyl-pro 93.8 0.83 1.8E-05 46.3 11.5 138 421-579 215-355 (397)
249 smart00299 CLH Clathrin heavy 93.7 2.7 5.9E-05 36.7 13.8 21 454-474 74-94 (140)
250 PF04053 Coatomer_WDAD: Coatom 93.5 1.9 4E-05 45.8 14.4 157 320-511 271-429 (443)
251 COG1729 Uncharacterized protei 93.5 0.53 1.1E-05 45.2 9.2 56 524-579 186-244 (262)
252 PF10300 DUF3808: Protein of u 93.4 13 0.00029 40.1 23.0 155 213-369 191-371 (468)
253 smart00299 CLH Clathrin heavy 93.4 5 0.00011 35.0 15.2 129 414-561 7-136 (140)
254 COG1747 Uncharacterized N-term 93.4 5.1 0.00011 41.9 16.3 197 40-257 43-249 (711)
255 PF09205 DUF1955: Domain of un 93.3 4.4 9.6E-05 34.2 13.8 84 394-481 69-152 (161)
256 COG4785 NlpI Lipoprotein NlpI, 93.3 4.3 9.3E-05 37.5 14.1 183 391-580 75-267 (297)
257 PF00515 TPR_1: Tetratricopept 93.2 0.13 2.9E-06 32.0 3.5 32 517-548 2-33 (34)
258 PF10300 DUF3808: Protein of u 93.2 1.8 3.9E-05 46.6 14.1 21 349-369 192-212 (468)
259 KOG1941 Acetylcholine receptor 93.1 1.7 3.7E-05 43.2 12.1 48 320-367 16-65 (518)
260 KOG1585 Protein required for f 93.1 4.8 0.0001 37.9 14.3 143 382-539 92-250 (308)
261 KOG1920 IkappaB kinase complex 93.1 8.6 0.00019 44.6 19.1 53 293-356 894-946 (1265)
262 PF07719 TPR_2: Tetratricopept 93.0 0.2 4.4E-06 31.0 4.1 32 518-549 3-34 (34)
263 KOG4234 TPR repeat-containing 92.8 0.36 7.8E-06 43.6 6.6 89 493-581 104-199 (271)
264 PRK11619 lytic murein transgly 92.7 20 0.00044 40.3 32.3 115 427-543 254-373 (644)
265 PF04053 Coatomer_WDAD: Coatom 92.7 3.1 6.7E-05 44.2 14.6 152 290-473 272-426 (443)
266 COG4105 ComL DNA uptake lipopr 92.6 6.3 0.00014 37.7 14.8 140 417-579 37-196 (254)
267 PF13281 DUF4071: Domain of un 92.3 15 0.00033 37.7 19.0 74 282-355 144-227 (374)
268 KOG2610 Uncharacterized conser 92.1 1.7 3.6E-05 42.7 10.5 160 426-587 115-284 (491)
269 KOG2114 Vacuolar assembly/sort 91.8 7.8 0.00017 43.2 16.2 138 425-576 379-516 (933)
270 PF09613 HrpB1_HrpK: Bacterial 91.6 8.4 0.00018 34.1 13.5 92 455-548 16-109 (160)
271 KOG3941 Intermediate in Toll s 91.5 0.99 2.1E-05 43.2 8.1 100 58-158 50-172 (406)
272 KOG1920 IkappaB kinase complex 91.4 31 0.00067 40.4 20.8 58 252-309 682-746 (1265)
273 KOG4555 TPR repeat-containing 91.3 1.6 3.4E-05 36.7 8.0 90 390-479 52-145 (175)
274 COG3629 DnrI DNA-binding trans 91.1 1.2 2.6E-05 43.4 8.7 77 382-458 154-236 (280)
275 PF13512 TPR_18: Tetratricopep 90.9 8.4 0.00018 33.4 12.6 114 421-550 17-133 (142)
276 PRK09687 putative lyase; Provi 90.5 20 0.00043 35.6 26.5 192 276-476 34-232 (280)
277 PRK15331 chaperone protein Sic 90.4 1.1 2.3E-05 39.8 6.9 92 40-137 39-133 (165)
278 KOG2114 Vacuolar assembly/sort 90.4 35 0.00076 38.4 27.5 74 490-564 711-785 (933)
279 PF13176 TPR_7: Tetratricopept 90.3 0.52 1.1E-05 29.8 3.7 26 552-577 1-26 (36)
280 KOG1258 mRNA processing protei 89.8 32 0.0007 37.1 32.0 382 174-565 44-490 (577)
281 COG1729 Uncharacterized protei 89.7 3.4 7.3E-05 39.8 10.2 90 461-550 153-249 (262)
282 PF13170 DUF4003: Protein of u 89.0 8.3 0.00018 38.5 12.9 94 398-493 120-226 (297)
283 PF13181 TPR_8: Tetratricopept 88.9 0.56 1.2E-05 29.0 3.1 31 518-548 3-33 (34)
284 KOG4648 Uncharacterized conser 88.6 0.89 1.9E-05 44.6 5.5 112 455-572 103-217 (536)
285 PF13428 TPR_14: Tetratricopep 88.6 0.56 1.2E-05 31.3 3.1 33 416-450 3-35 (44)
286 PF02259 FAT: FAT domain; Int 88.4 33 0.00071 35.3 22.3 148 412-561 144-303 (352)
287 KOG1941 Acetylcholine receptor 88.4 16 0.00035 36.6 13.8 125 420-544 128-274 (518)
288 PF10602 RPN7: 26S proteasome 87.8 8.9 0.00019 35.0 11.4 93 416-510 38-139 (177)
289 PF13176 TPR_7: Tetratricopept 87.3 1 2.2E-05 28.5 3.5 26 75-100 1-26 (36)
290 PF02259 FAT: FAT domain; Int 87.0 23 0.00049 36.6 15.7 67 515-581 145-215 (352)
291 PF09613 HrpB1_HrpK: Bacterial 86.9 2.6 5.6E-05 37.2 6.9 54 527-580 21-74 (160)
292 KOG1464 COP9 signalosome, subu 86.7 31 0.00067 33.1 17.7 251 274-529 21-317 (440)
293 KOG0276 Vesicle coat complex C 86.4 13 0.00027 40.0 12.5 116 292-436 599-714 (794)
294 COG3118 Thioredoxin domain-con 86.4 35 0.00076 33.5 17.7 117 355-476 144-263 (304)
295 COG3629 DnrI DNA-binding trans 85.8 3.8 8.1E-05 40.1 8.1 61 518-578 155-215 (280)
296 TIGR02561 HrpB1_HrpK type III 85.2 3.1 6.8E-05 36.0 6.4 54 528-581 22-75 (153)
297 PF04184 ST7: ST7 protein; In 84.6 16 0.00034 38.6 12.1 97 454-550 264-380 (539)
298 COG2976 Uncharacterized protei 84.4 33 0.00072 31.5 13.6 115 432-549 70-192 (207)
299 KOG4570 Uncharacterized conser 84.1 3.5 7.6E-05 40.2 6.8 95 378-476 61-162 (418)
300 PF07035 Mic1: Colon cancer-as 83.7 33 0.00071 30.9 15.7 53 313-369 92-144 (167)
301 TIGR02508 type_III_yscG type I 83.7 19 0.00041 28.9 9.4 60 286-348 46-105 (115)
302 PF07721 TPR_4: Tetratricopept 83.6 1.6 3.4E-05 25.2 2.8 24 551-574 2-25 (26)
303 PF06552 TOM20_plant: Plant sp 83.6 7.9 0.00017 34.9 8.4 34 532-565 51-84 (186)
304 PF07719 TPR_2: Tetratricopept 83.5 1.9 4.2E-05 26.4 3.5 29 551-579 2-30 (34)
305 PF00515 TPR_1: Tetratricopept 83.4 2.2 4.8E-05 26.3 3.7 27 416-442 3-29 (34)
306 PRK10941 hypothetical protein; 83.0 7.6 0.00017 38.1 9.0 62 519-580 184-245 (269)
307 KOG2396 HAT (Half-A-TPR) repea 82.6 71 0.0015 33.9 28.3 102 445-548 455-563 (568)
308 KOG2066 Vacuolar assembly/sort 82.5 90 0.002 35.0 21.4 47 146-192 394-440 (846)
309 PF13431 TPR_17: Tetratricopep 81.1 2.5 5.5E-05 26.3 3.3 30 134-164 4-33 (34)
310 PF14853 Fis1_TPR_C: Fis1 C-te 80.2 11 0.00024 26.3 6.5 50 553-628 4-53 (53)
311 PF10602 RPN7: 26S proteasome 80.1 11 0.00023 34.5 8.4 93 75-170 38-139 (177)
312 PRK12798 chemotaxis protein; R 80.0 80 0.0017 32.8 22.8 181 394-577 125-322 (421)
313 PF13374 TPR_10: Tetratricopep 79.4 3.4 7.3E-05 26.7 3.7 28 551-578 3-30 (42)
314 KOG4648 Uncharacterized conser 79.2 5.7 0.00012 39.3 6.5 87 421-517 104-199 (536)
315 COG4785 NlpI Lipoprotein NlpI, 79.0 57 0.0012 30.5 14.3 66 274-339 93-162 (297)
316 PF00637 Clathrin: Region in C 78.9 2.7 6E-05 36.8 4.1 83 218-306 15-97 (143)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 78.5 12 0.00026 29.8 6.7 62 88-152 22-84 (103)
318 PF00637 Clathrin: Region in C 78.3 1.5 3.3E-05 38.4 2.3 86 114-202 12-97 (143)
319 PF13181 TPR_8: Tetratricopept 77.5 4.8 0.0001 24.6 3.8 28 551-578 2-29 (34)
320 KOG1550 Extracellular protein 77.3 1.2E+02 0.0027 33.5 20.8 248 320-578 259-537 (552)
321 PF11207 DUF2989: Protein of u 77.2 12 0.00026 34.5 7.6 75 495-570 118-198 (203)
322 TIGR02508 type_III_yscG type I 77.2 33 0.00071 27.6 8.8 87 125-215 21-107 (115)
323 PF14853 Fis1_TPR_C: Fis1 C-te 77.1 5 0.00011 28.0 4.0 30 522-551 7-36 (53)
324 PF07035 Mic1: Colon cancer-as 76.8 57 0.0012 29.4 14.4 132 195-336 14-146 (167)
325 KOG1550 Extracellular protein 76.4 98 0.0021 34.3 16.1 116 464-582 308-429 (552)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 76.3 20 0.00042 28.6 7.4 61 430-492 23-84 (103)
327 PRK13800 putative oxidoreducta 76.2 1.8E+02 0.0038 34.7 24.9 183 379-577 696-879 (897)
328 TIGR02561 HrpB1_HrpK type III 75.9 54 0.0012 28.7 11.3 66 461-528 22-89 (153)
329 PF02284 COX5A: Cytochrome c o 75.8 18 0.00039 29.1 7.2 59 432-492 28-87 (108)
330 KOG1308 Hsp70-interacting prot 75.1 1.9 4E-05 42.7 2.0 90 496-585 126-217 (377)
331 PRK09687 putative lyase; Provi 75.1 92 0.002 31.0 26.0 75 276-355 203-277 (280)
332 PF13174 TPR_6: Tetratricopept 74.7 4.1 9E-05 24.6 3.0 28 552-579 2-29 (33)
333 COG2909 MalT ATP-dependent tra 74.3 1.7E+02 0.0037 33.6 20.4 188 392-582 426-650 (894)
334 KOG0890 Protein kinase of the 74.0 2.8E+02 0.006 35.9 31.0 309 252-581 1388-1733(2382)
335 PF02284 COX5A: Cytochrome c o 74.0 14 0.00029 29.8 6.1 60 91-152 28-87 (108)
336 PF13374 TPR_10: Tetratricopep 73.9 6.5 0.00014 25.3 4.0 27 416-442 4-30 (42)
337 PF13170 DUF4003: Protein of u 73.9 1E+02 0.0022 30.9 14.0 127 328-456 80-224 (297)
338 smart00028 TPR Tetratricopepti 73.8 6 0.00013 23.0 3.6 23 554-576 5-27 (34)
339 KOG4570 Uncharacterized conser 73.8 13 0.00029 36.4 7.2 95 412-510 62-161 (418)
340 PF04097 Nic96: Nup93/Nic96; 73.5 1.6E+02 0.0035 33.1 22.4 63 149-211 116-188 (613)
341 KOG3364 Membrane protein invol 73.2 16 0.00035 31.1 6.7 48 531-578 50-99 (149)
342 PF13174 TPR_6: Tetratricopept 72.7 5.6 0.00012 24.0 3.2 28 522-549 6-33 (33)
343 KOG1586 Protein required for f 71.6 68 0.0015 30.4 10.9 21 530-550 209-229 (288)
344 PF07721 TPR_4: Tetratricopept 70.3 8.7 0.00019 22.0 3.4 21 283-303 5-25 (26)
345 COG3947 Response regulator con 70.2 15 0.00033 35.7 6.7 58 521-578 284-341 (361)
346 PF11207 DUF2989: Protein of u 70.1 30 0.00066 32.0 8.4 73 192-265 123-196 (203)
347 PF04910 Tcf25: Transcriptiona 69.3 1.4E+02 0.0031 30.9 14.3 64 515-578 99-167 (360)
348 PRK15180 Vi polysaccharide bio 68.7 33 0.00071 35.9 9.0 99 446-547 322-422 (831)
349 KOG1586 Protein required for f 68.4 1.1E+02 0.0024 29.1 15.0 14 530-543 168-181 (288)
350 KOG4279 Serine/threonine prote 67.9 1.7E+02 0.0038 32.7 14.5 182 313-549 204-399 (1226)
351 COG4649 Uncharacterized protei 67.8 94 0.002 28.0 13.9 86 391-476 104-194 (221)
352 KOG4642 Chaperone-dependent E3 67.8 19 0.00041 34.0 6.6 81 498-578 24-106 (284)
353 PF04097 Nic96: Nup93/Nic96; 67.6 1.8E+02 0.0038 32.9 15.7 85 422-511 266-354 (613)
354 KOG0545 Aryl-hydrocarbon recep 66.6 24 0.00053 33.4 7.1 87 493-579 187-293 (329)
355 KOG0376 Serine-threonine phosp 66.4 11 0.00024 39.3 5.4 86 493-578 13-100 (476)
356 PF14561 TPR_20: Tetratricopep 65.9 17 0.00037 28.8 5.3 45 536-580 8-52 (90)
357 KOG1498 26S proteasome regulat 65.1 1.7E+02 0.0037 30.1 17.2 109 488-600 135-262 (439)
358 COG4455 ImpE Protein of avirul 64.5 24 0.00052 32.9 6.5 64 487-550 4-69 (273)
359 KOG0686 COP9 signalosome, subu 64.4 1.8E+02 0.0039 30.1 14.4 60 383-442 152-215 (466)
360 COG1747 Uncharacterized N-term 63.0 2.2E+02 0.0047 30.5 21.6 162 383-550 68-239 (711)
361 PF06552 TOM20_plant: Plant sp 62.7 26 0.00056 31.7 6.3 29 432-462 53-82 (186)
362 KOG4507 Uncharacterized conser 62.1 27 0.00059 37.4 7.2 100 461-561 619-721 (886)
363 KOG0276 Vesicle coat complex C 60.7 97 0.0021 33.7 10.9 132 348-511 617-748 (794)
364 PF13762 MNE1: Mitochondrial s 60.2 75 0.0016 27.8 8.5 51 173-223 77-128 (145)
365 smart00028 TPR Tetratricopepti 60.2 17 0.00037 20.8 3.7 31 518-548 3-33 (34)
366 TIGR03504 FimV_Cterm FimV C-te 60.1 17 0.00036 24.3 3.6 27 554-580 3-29 (44)
367 smart00386 HAT HAT (Half-A-TPR 59.4 15 0.00032 21.8 3.2 29 530-558 1-29 (33)
368 PF11768 DUF3312: Protein of u 59.3 1.1E+02 0.0024 33.0 11.2 59 385-443 412-473 (545)
369 KOG2034 Vacuolar sorting prote 58.6 3.4E+02 0.0074 31.3 23.0 85 117-212 366-452 (911)
370 PF04910 Tcf25: Transcriptiona 58.5 2.3E+02 0.005 29.4 15.1 100 448-548 99-225 (360)
371 KOG3824 Huntingtin interacting 58.5 37 0.0008 33.3 6.9 49 527-575 127-175 (472)
372 PF09986 DUF2225: Uncharacteri 58.4 49 0.0011 31.3 7.9 47 534-580 143-195 (214)
373 PF10366 Vps39_1: Vacuolar sor 57.9 70 0.0015 26.4 7.8 27 416-442 41-67 (108)
374 PRK15180 Vi polysaccharide bio 57.6 1E+02 0.0022 32.4 10.2 136 461-600 301-439 (831)
375 cd08819 CARD_MDA5_2 Caspase ac 57.1 51 0.0011 25.8 6.2 66 24-93 21-86 (88)
376 PF09670 Cas_Cas02710: CRISPR- 56.8 1.7E+02 0.0036 30.7 12.2 53 424-477 141-197 (379)
377 PF10579 Rapsyn_N: Rapsyn N-te 56.6 37 0.0008 26.0 5.2 46 461-506 18-65 (80)
378 PF12968 DUF3856: Domain of Un 55.5 68 0.0015 26.8 6.9 60 518-577 57-127 (144)
379 KOG0551 Hsp90 co-chaperone CNS 55.3 58 0.0012 32.6 7.7 91 486-576 83-179 (390)
380 PF07163 Pex26: Pex26 protein; 54.5 1.3E+02 0.0028 29.4 9.8 88 421-510 90-184 (309)
381 COG4649 Uncharacterized protei 53.7 1.7E+02 0.0037 26.4 16.2 121 424-544 68-195 (221)
382 PF09477 Type_III_YscG: Bacter 53.6 1.2E+02 0.0026 24.8 7.9 80 123-205 20-99 (116)
383 PF13934 ELYS: Nuclear pore co 53.4 2.1E+02 0.0046 27.3 11.6 104 417-528 79-184 (226)
384 KOG4234 TPR repeat-containing 52.8 1.5E+02 0.0032 27.6 9.3 89 460-549 106-201 (271)
385 KOG2034 Vacuolar sorting prote 52.8 4.2E+02 0.0091 30.6 24.3 233 253-500 364-644 (911)
386 PF10345 Cohesin_load: Cohesin 52.6 3.9E+02 0.0084 30.2 25.1 48 527-574 372-428 (608)
387 PF08631 SPO22: Meiosis protei 51.1 2.6E+02 0.0056 27.7 25.8 65 279-344 121-191 (278)
388 PF10579 Rapsyn_N: Rapsyn N-te 50.6 46 0.00099 25.5 4.9 47 426-472 18-66 (80)
389 TIGR03504 FimV_Cterm FimV C-te 49.8 35 0.00076 22.8 3.8 25 316-340 5-29 (44)
390 PF12862 Apc5: Anaphase-promot 49.1 43 0.00093 26.7 5.1 52 527-578 9-69 (94)
391 COG5159 RPN6 26S proteasome re 49.0 2.7E+02 0.0059 27.4 14.4 47 316-362 9-62 (421)
392 COG2976 Uncharacterized protei 49.0 2.2E+02 0.0048 26.3 14.6 88 253-340 95-189 (207)
393 PF13762 MNE1: Mitochondrial s 48.5 1.9E+02 0.004 25.4 9.1 81 417-497 42-128 (145)
394 KOG0686 COP9 signalosome, subu 48.5 3.4E+02 0.0073 28.3 14.0 24 250-273 153-176 (466)
395 PRK10941 hypothetical protein; 48.1 1.1E+02 0.0025 30.0 8.8 65 488-552 185-251 (269)
396 PF04190 DUF410: Protein of un 47.9 2.8E+02 0.0061 27.2 16.9 81 379-476 88-168 (260)
397 PF10366 Vps39_1: Vacuolar sor 46.6 1.1E+02 0.0025 25.1 7.3 28 311-338 40-67 (108)
398 KOG3364 Membrane protein invol 46.4 1.9E+02 0.0042 24.9 9.0 70 481-550 29-105 (149)
399 KOG0292 Vesicle coat complex C 46.3 30 0.00064 39.1 4.8 75 455-544 626-700 (1202)
400 COG4455 ImpE Protein of avirul 45.5 2.7E+02 0.0059 26.3 12.3 127 416-550 3-139 (273)
401 PF11663 Toxin_YhaV: Toxin wit 44.7 30 0.00066 29.5 3.6 32 187-220 107-138 (140)
402 PF14863 Alkyl_sulf_dimr: Alky 44.7 86 0.0019 27.3 6.5 64 501-567 58-121 (141)
403 PF11848 DUF3368: Domain of un 44.6 64 0.0014 21.9 4.6 36 184-219 11-46 (48)
404 PF14561 TPR_20: Tetratricopep 43.6 1.6E+02 0.0035 23.2 8.2 62 515-576 21-85 (90)
405 PF07575 Nucleopor_Nup85: Nup8 42.9 5.2E+02 0.011 28.8 15.4 40 330-369 390-429 (566)
406 PRK13342 recombination factor 42.9 4.1E+02 0.0089 28.2 12.9 166 90-273 154-331 (413)
407 PF11838 ERAP1_C: ERAP1-like C 42.6 3.7E+02 0.0081 27.1 17.9 89 416-509 171-262 (324)
408 KOG4077 Cytochrome c oxidase, 41.7 1.3E+02 0.0029 25.4 6.7 69 432-511 67-136 (149)
409 PHA02875 ankyrin repeat protei 41.6 4.5E+02 0.0097 27.7 17.1 56 388-449 172-230 (413)
410 PF11846 DUF3366: Domain of un 41.2 83 0.0018 29.1 6.6 36 512-547 140-175 (193)
411 KOG0292 Vesicle coat complex C 41.0 3.9E+02 0.0084 30.9 12.0 131 389-544 651-781 (1202)
412 PF09477 Type_III_YscG: Bacter 40.6 2.1E+02 0.0045 23.6 9.5 63 283-348 44-106 (116)
413 KOG0687 26S proteasome regulat 40.5 4E+02 0.0087 26.9 11.7 92 383-476 106-208 (393)
414 PHA02537 M terminase endonucle 40.3 2.9E+02 0.0063 26.4 9.8 102 428-548 97-210 (230)
415 PF11846 DUF3366: Domain of un 40.1 97 0.0021 28.7 6.8 30 481-510 141-170 (193)
416 PF07575 Nucleopor_Nup85: Nup8 39.6 5.8E+02 0.013 28.5 18.3 69 299-369 394-462 (566)
417 KOG0991 Replication factor C, 39.3 3.5E+02 0.0076 25.9 10.9 139 285-450 136-274 (333)
418 PF07720 TPR_3: Tetratricopept 38.8 60 0.0013 20.5 3.5 28 520-547 5-34 (36)
419 COG5108 RPO41 Mitochondrial DN 38.7 1.1E+02 0.0024 33.6 7.4 46 419-464 33-80 (1117)
420 PF07163 Pex26: Pex26 protein; 38.5 3.4E+02 0.0074 26.7 9.9 86 316-404 89-181 (309)
421 KOG1524 WD40 repeat-containing 38.3 1.6E+02 0.0035 31.4 8.3 90 483-575 572-669 (737)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 2E+02 0.0044 24.4 7.8 42 467-508 81-123 (126)
423 PRK13800 putative oxidoreducta 37.8 7.8E+02 0.017 29.4 27.4 248 276-544 632-880 (897)
424 KOG2396 HAT (Half-A-TPR) repea 37.2 5.6E+02 0.012 27.6 35.2 237 330-576 302-556 (568)
425 KOG0890 Protein kinase of the 36.7 1.1E+03 0.024 31.0 28.7 57 451-510 1672-1728(2382)
426 COG4976 Predicted methyltransf 36.6 50 0.0011 31.1 4.0 56 494-549 5-62 (287)
427 PRK10564 maltose regulon perip 36.5 60 0.0013 32.1 4.7 39 312-350 259-297 (303)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 35.9 2.2E+02 0.0047 24.3 7.7 43 91-133 81-123 (126)
429 PF04190 DUF410: Protein of un 35.6 4.3E+02 0.0094 25.9 18.0 124 204-339 43-170 (260)
430 COG5191 Uncharacterized conser 34.7 69 0.0015 31.7 4.7 73 483-555 106-181 (435)
431 PF11848 DUF3368: Domain of un 34.4 1.5E+02 0.0032 20.2 5.1 31 426-456 14-44 (48)
432 COG3947 Response regulator con 34.3 4.8E+02 0.01 26.0 14.7 38 327-366 150-187 (361)
433 PF09670 Cas_Cas02710: CRISPR- 34.1 4.3E+02 0.0093 27.7 11.0 53 458-511 140-196 (379)
434 KOG4642 Chaperone-dependent E3 34.0 3.5E+02 0.0077 26.0 9.0 114 395-510 24-143 (284)
435 PF04034 DUF367: Domain of unk 33.9 2.9E+02 0.0063 23.5 7.7 58 484-541 66-124 (127)
436 KOG4077 Cytochrome c oxidase, 33.6 2.1E+02 0.0045 24.3 6.6 46 194-239 68-113 (149)
437 cd00280 TRFH Telomeric Repeat 32.5 2E+02 0.0044 26.3 6.9 27 523-550 118-144 (200)
438 KOG3807 Predicted membrane pro 32.3 1.3E+02 0.0029 30.0 6.3 16 393-408 287-302 (556)
439 TIGR02270 conserved hypothetic 32.3 6.3E+02 0.014 26.7 25.0 232 79-369 44-276 (410)
440 COG0790 FOG: TPR repeat, SEL1 32.1 5.1E+02 0.011 25.6 19.5 115 464-581 128-268 (292)
441 cd08819 CARD_MDA5_2 Caspase ac 32.1 2.1E+02 0.0044 22.5 6.0 37 156-193 48-84 (88)
442 PF11663 Toxin_YhaV: Toxin wit 32.0 64 0.0014 27.6 3.6 32 85-119 107-138 (140)
443 PF04034 DUF367: Domain of unk 31.5 2.6E+02 0.0056 23.8 7.0 61 242-302 61-122 (127)
444 PRK10564 maltose regulon perip 31.1 87 0.0019 31.0 4.9 41 416-456 259-299 (303)
445 PF13929 mRNA_stabil: mRNA sta 31.0 5.4E+02 0.012 25.6 15.4 158 196-406 98-263 (292)
446 PF05944 Phage_term_smal: Phag 30.6 3.4E+02 0.0073 23.4 7.8 33 78-110 53-85 (132)
447 KOG4507 Uncharacterized conser 30.5 2.1E+02 0.0046 31.2 7.8 135 445-581 567-707 (886)
448 KOG2063 Vacuolar assembly/sort 30.4 9.6E+02 0.021 28.3 17.6 27 312-338 506-532 (877)
449 PF14689 SPOB_a: Sensor_kinase 30.1 75 0.0016 23.0 3.4 27 416-442 25-51 (62)
450 PF01347 Vitellogenin_N: Lipop 29.5 8.6E+02 0.019 27.4 14.4 240 42-289 349-617 (618)
451 PRK11619 lytic murein transgly 29.4 8.9E+02 0.019 27.5 41.8 397 146-583 101-509 (644)
452 KOG2659 LisH motif-containing 29.0 3.8E+02 0.0083 25.5 8.5 91 417-509 29-128 (228)
453 PF11525 CopK: Copper resistan 28.9 20 0.00043 26.2 0.2 22 695-716 8-29 (73)
454 PF12862 Apc5: Anaphase-promot 28.9 1.6E+02 0.0034 23.4 5.4 22 524-545 49-70 (94)
455 COG4976 Predicted methyltransf 28.0 1.1E+02 0.0024 28.9 4.7 55 527-581 6-60 (287)
456 PF14689 SPOB_a: Sensor_kinase 27.8 1.3E+02 0.0029 21.7 4.3 29 448-476 22-50 (62)
457 TIGR02710 CRISPR-associated pr 27.6 7.2E+02 0.016 25.9 11.9 24 424-447 140-163 (380)
458 KOG2471 TPR repeat-containing 27.2 8.1E+02 0.018 26.4 14.4 105 389-495 248-380 (696)
459 KOG3824 Huntingtin interacting 26.3 1.1E+02 0.0023 30.3 4.5 24 529-552 163-186 (472)
460 COG5108 RPO41 Mitochondrial DN 26.2 2.8E+02 0.006 30.8 7.8 48 180-227 33-82 (1117)
461 PF08967 DUF1884: Domain of un 25.8 80 0.0017 24.1 2.8 25 610-634 8-32 (85)
462 COG2912 Uncharacterized conser 25.7 1.4E+02 0.003 29.2 5.2 56 524-579 189-244 (269)
463 COG5187 RPN7 26S proteasome re 25.4 3.6E+02 0.0078 26.6 7.7 27 484-510 115-141 (412)
464 cd08326 CARD_CASP9 Caspase act 25.2 2.1E+02 0.0046 22.3 5.2 62 25-92 19-80 (84)
465 COG0735 Fur Fe2+/Zn2+ uptake r 25.0 3.5E+02 0.0075 23.7 7.2 48 177-224 22-69 (145)
466 KOG3807 Predicted membrane pro 24.9 7.3E+02 0.016 25.1 10.6 49 423-473 284-335 (556)
467 KOG4279 Serine/threonine prote 24.5 3.1E+02 0.0067 31.0 7.9 58 416-476 203-270 (1226)
468 PRK11639 zinc uptake transcrip 24.0 3.2E+02 0.0069 24.7 7.1 52 175-226 25-76 (169)
469 PF15161 Neuropep_like: Neurop 23.5 46 0.001 23.1 1.1 16 675-691 12-27 (65)
470 KOG1350 F0F1-type ATP synthase 23.4 30 0.00066 33.9 0.4 71 618-711 237-307 (521)
471 KOG1811 Predicted Zn2+-binding 23.3 1E+03 0.022 26.2 13.3 98 485-585 557-655 (1141)
472 PF11123 DNA_Packaging_2: DNA 23.0 1.6E+02 0.0035 22.1 3.8 60 396-476 12-72 (82)
473 PF15469 Sec5: Exocyst complex 23.0 5.8E+02 0.013 23.2 9.3 23 454-476 91-113 (182)
474 PF06957 COPI_C: Coatomer (COP 22.9 1.9E+02 0.004 30.6 5.9 44 506-549 288-333 (422)
475 smart00638 LPD_N Lipoprotein N 22.8 1.1E+03 0.023 26.3 22.0 58 39-101 310-368 (574)
476 PF11768 DUF3312: Protein of u 22.5 1E+03 0.022 26.1 11.1 55 148-202 412-471 (545)
477 PF10255 Paf67: RNA polymerase 22.1 3.9E+02 0.0085 28.1 8.0 58 384-441 125-191 (404)
478 PHA00425 DNA packaging protein 22.1 3E+02 0.0064 21.0 5.0 51 396-457 14-65 (88)
479 smart00804 TAP_C C-terminal do 22.0 76 0.0016 23.2 2.1 24 87-110 39-62 (63)
480 TIGR02270 conserved hypothetic 21.9 9.7E+02 0.021 25.4 25.3 215 276-512 66-280 (410)
481 TIGR03581 EF_0839 conserved hy 21.9 1.1E+02 0.0023 28.6 3.4 56 10-68 165-234 (236)
482 COG0735 Fur Fe2+/Zn2+ uptake r 21.5 4.6E+02 0.0099 22.9 7.3 45 315-359 25-69 (145)
483 PF13934 ELYS: Nuclear pore co 21.3 7.2E+02 0.016 23.7 11.8 70 252-321 113-183 (226)
484 PF04090 RNA_pol_I_TF: RNA pol 21.3 6.8E+02 0.015 23.4 10.1 92 517-608 42-134 (199)
485 PF11817 Foie-gras_1: Foie gra 20.7 3.7E+02 0.0081 26.0 7.4 53 420-472 184-241 (247)
486 PF09454 Vps23_core: Vps23 cor 20.2 2.2E+02 0.0048 20.9 4.2 49 447-496 6-54 (65)
487 cd00280 TRFH Telomeric Repeat 20.2 5.4E+02 0.012 23.7 7.3 33 491-523 118-150 (200)
488 PRK11639 zinc uptake transcrip 20.0 4.4E+02 0.0094 23.8 7.1 44 316-359 31-74 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-132 Score=1149.36 Aligned_cols=703 Identities=36% Similarity=0.687 Sum_probs=678.2
Q ss_pred ccccccchHHHHHHhcc---ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHH
Q 047480 3 RLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78 (719)
Q Consensus 3 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 78 (719)
|..|+..+|..++++|. .+..|.++|..+++.+..+ .+++|+|+++|++ + |+++.|+++|++|++||+++||+
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~--~-g~~~~A~~~f~~m~~~d~~~~n~ 157 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR--F-GELVHAWYVFGKMPERDLFSWNV 157 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--C-CChHHHHHHHhcCCCCCeeEHHH
Confidence 45778888999999997 7899999999999999877 7899999999999 9 99999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 79 LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
+|.+|++.|++++|+++|++|...|+. ||.+||+.++++|+..++++.+.++|..+++.|+.||+.++|+|+.+|+++|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~-Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 047480 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 238 (719)
++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|+++|..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHH-------------------------------HHc--------------
Q 047480 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVF-------------------------------STM-------------- 273 (719)
Q Consensus 239 ~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~-------------------------------~~~-------------- 273 (719)
. |+.||..+||+|+.+|+++|++++|.++| ++|
T Consensus 317 ~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 317 T--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred h--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 9 99999999999999998888855544443 333
Q ss_pred ------------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047480 274 ------------------------GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329 (719)
Q Consensus 274 ------------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (719)
|+.|+..++|+||++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 34456667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 330 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+++|++|.. +++||..||++++.+|++.|+++.++++|. .+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~-~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA-HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH-HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 999999986 599999999999999999999999999999 8999999999999999999999999999999999999 5
Q ss_pred CCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHH
Q 047480 410 NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYG 488 (719)
Q Consensus 410 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~ 488 (719)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|. ++|+.|+..+|+
T Consensus 552 --~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 552 --KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred --CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
+|+++|+|+|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+++++++++|+++..|+.|+++|+..|+|++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccChhhhhHhh
Q 047480 569 ARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVV 648 (719)
Q Consensus 569 A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~ 648 (719)
|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|+.+|+++..+|++.||+||+..++ ++++++|+..+
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~ 788 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIF 788 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 55888999999
Q ss_pred hhhhHHHHHHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceEEEecCCcccccCCCccCCCC
Q 047480 649 SYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHLFKKGNCSCMD 717 (719)
Q Consensus 649 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 717 (719)
++||||||+|||||++|+|.||||+||||||+|||+++||||++++|+|||||.+|||||+||+|||+|
T Consensus 789 ~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 789 CGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-123 Score=1049.76 Aligned_cols=612 Identities=34% Similarity=0.602 Sum_probs=603.0
Q ss_pred CCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCC-CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHH
Q 047480 70 NPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKG-IVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRN 148 (719)
Q Consensus 70 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 148 (719)
.++.++|+++|.+|.+.|++++|+++|+.|...+ .. ||..||+.++.+|.+.++++.|.++|..|.+.|+.||+.++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 3577899999999999999999999999999875 55 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH
Q 047480 149 ALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228 (719)
Q Consensus 149 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (719)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 047480 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308 (719)
Q Consensus 229 a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 308 (719)
++++|..+.+. |+.+|..++|+||++|+++|++++|.++|++|.++
T Consensus 243 ~~~l~~~~~~~----------------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 243 GQQLHCCVLKT----------------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HHHHHHHHHHh----------------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|. .+.+.|+.+|..++++||
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~-~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA-GLIRTGFPLDIVANTALV 367 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH-HHHHhCCCCCeeehHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
++|+++|++++|.++|++|.+ +|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 469 KQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 469 ~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.++|+.|. ++|+.|+..+|++|+++|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99999998 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAG 627 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g 627 (719)
++..+|..|+++|++.|+|++|.++++.|+++|+++.||+|||++++.+|.|.+||..||+.++|++++.++..+|++.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccChhhhhHhhhhhhHHHHHHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceEEEecCCcccc
Q 047480 628 YVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMVRDAIRFHL 707 (719)
Q Consensus 628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~ 707 (719)
|+||+.+++||+++++|+..+++||||||+|||||++|+|.||||+||||||+|||+++||||++++|+|||||.+||||
T Consensus 606 y~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~ 685 (697)
T PLN03081 606 YVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHH 685 (697)
T ss_pred CCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCC
Q 047480 708 FKKGNCSCMDFW 719 (719)
Q Consensus 708 ~~~g~csc~~~~ 719 (719)
|+||+|||+|||
T Consensus 686 f~~g~csc~d~w 697 (697)
T PLN03081 686 FKLGKCSCGDYW 697 (697)
T ss_pred CCCCcccccccC
Confidence 999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-73 Score=656.91 Aligned_cols=668 Identities=22% Similarity=0.299 Sum_probs=580.9
Q ss_pred hHHHHHHhc---cChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccC----CCCCccHHHHHHH
Q 047480 10 SLLALLESC---KSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQI----DNPNIFIWNTLMR 81 (719)
Q Consensus 10 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~----~~~~~~~~~~li~ 81 (719)
.+..+++++ +.+++|..++..+.+.|+.+ ...++.++..+.+ . +.++.|.++++.+ +.++...+|++|.
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEW--K-RAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh--C-CCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 345555543 48999999999999999887 7889999999999 8 9999999999865 4578899999999
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 047480 82 GYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYIN 161 (719)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 161 (719)
+|++.|+.+.|+++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||.++|+.++..+++.++++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999973 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC----CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 047480 162 NAHKVFEGSL----ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVY 237 (719)
Q Consensus 162 ~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 237 (719)
.+.+++..|. .+|+.+||+||.+|++.|++++|.++|++|. .||..||++++.+|.+.|+.++|.+++..|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999988765 4799999999999999999999999999997 4899999999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc---CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH
Q 047480 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314 (719)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 314 (719)
+. |+.||..+|+.++.++++.|+.+.+.+++..+ |+.||..+||+|+++|+++|++++|.++|++|.++|+++||
T Consensus 281 ~~--g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 281 EL--SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred Hc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 98 99999999999999999999999999998888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+ .+.+.|+.++..++++||++|+++
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~-~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
|++++|.++|++|.+ +|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.+.+++..
T Consensus 438 g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 438 KCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999 9999999999999999999999999999986 5999999999999999999999999999999
Q ss_pred HHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCchh
Q 047480 475 MLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAH 552 (719)
Q Consensus 475 m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~ 552 (719)
+.+.|+.++..++++|+++|+++|++++|.++|+++ +||.++|++++.+|.++|+.++|.++|++|.+ ..|+ ..+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T 591 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVT 591 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-ccc
Confidence 999999999999999999999999999999999999 78999999999999999999999999999987 5565 578
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHH-hCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMD-DSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~ 631 (719)
|..++.+|++.|++++|.++|+.|. +.|+.|.... + ...+ ......+..+ +..+.++++++.||
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y---~~lv----~~l~r~G~~~-------eA~~~~~~m~~~pd 656 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-Y---ACVV----DLLGRAGKLT-------EAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-H---HHHH----HHHHhCCCHH-------HHHHHHHHCCCCCC
Confidence 9999999999999999999999999 6788664421 0 0001 1111122333 33344455579999
Q ss_pred CCccccccChhhhhHhhhhhhHHHH-HHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceEEE-------ecCC
Q 047480 632 TVQVVFDVDEEEKETVVSYHSEKLA-LAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREIMV-------RDAI 703 (719)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------~d~~ 703 (719)
...|..-+..+...+-+.. .|+.+ ..+.+.+..++.-+.+..-....|+..++.+....|..+.+.- --.+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 657 PAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 8877655555533222211 12222 2334444434433333333456788899988888776663221 1125
Q ss_pred cccccCCCccC
Q 047480 704 RFHLFKKGNCS 714 (719)
Q Consensus 704 ~~h~~~~g~cs 714 (719)
..|-|..|--|
T Consensus 736 ~~~~f~~~d~~ 746 (857)
T PLN03077 736 KVHAFLTDDES 746 (857)
T ss_pred EEEEEecCCCC
Confidence 67888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-66 Score=587.24 Aligned_cols=505 Identities=17% Similarity=0.246 Sum_probs=436.8
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCcc-----HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIF-----IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~ 113 (719)
...+..+++.|++ + |++++|.++|+.|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 370 ~~~~~~~y~~l~r--~-G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 370 SPEYIDAYNRLLR--D-GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred chHHHHHHHHHHH--C-cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 3567777888888 8 8899999999988775544 445667778888888999988888863 8888999
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCChhhHHHHHHHHHcCC
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL----ARDLVSYNTLINGYAQVK 189 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 189 (719)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999988888999999999999999999999999998887 478889999999999999
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+..
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----------------------------- 572 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----------------------------- 572 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 999999999999888888998999999988888888888888888887620
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh
Q 047480 270 FSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE 345 (719)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 345 (719)
.|+.||..+|++||++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 573 ---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 573 ---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred ---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 06788999999999999999999999999999875 56689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISG 423 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~ 423 (719)
.||+.++.+|++.|++++|.++|. .+.+.|+.|+..+|++||++|+++|++++|.++|++|... .||+.+||+||.+
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~-eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQ-DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999 8888999999999999999999999999999999998643 5899999999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH----hcC-
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA----RDG- 498 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g- 498 (719)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|++|++++. +++
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~ 808 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643 222
Q ss_pred ------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCchhHHHH
Q 047480 499 ------------------RLDEAYGLIQSM---PYDANSVIWRALLAACRLHRNAKIGEIAGQKLL-DLEPDHGAHYVLL 556 (719)
Q Consensus 499 ------------------~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l 556 (719)
..++|..+|++| ++.||..+|++++.++...+..+.+..+++.+. .-.+.+..+|..|
T Consensus 809 l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L 888 (1060)
T PLN03218 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTL 888 (1060)
T ss_pred hhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHH
Confidence 246799999999 688999999999977777788888888887654 2344556789999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCCc
Q 047480 557 SNMLAETYRWEEARQVRKLMDDSGIQKPPG 586 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 586 (719)
++.+.+. .++|..++++|.+.|+.|...
T Consensus 889 i~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9987332 368999999999999987654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.7e-65 Score=572.79 Aligned_cols=439 Identities=28% Similarity=0.454 Sum_probs=417.6
Q ss_pred ccccccchHHHHHHhcc---ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHH
Q 047480 3 RLVLEHSSLLALLESCK---SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNT 78 (719)
Q Consensus 3 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 78 (719)
+..|+..+|..++.+|. +++.+.++|..+.+.|+.+ .+++|.|+++|++ + |++++|+++|++|++||.++||+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k--~-g~~~~A~~lf~~m~~~~~~t~n~ 194 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK--C-GMLIDARRLFDEMPERNLASWGT 194 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--C-CCHHHHHHHHhcCCCCCeeeHHH
Confidence 45678889999999997 7899999999999999988 8999999999999 9 99999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 79 LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
+|.+|++.|++++|+++|++|.+.|+. ||..||+.++.+|++.|..+.+.++|..+.+.|+.+|..++|+|+++|+++|
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 047480 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 238 (719)
++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|..+.+
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 047480 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMIS 318 (719)
Q Consensus 239 ~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 318 (719)
. |+.||..++|+||++|+++|++++|.++|++|.++|+++||+||.
T Consensus 354 ~----------------------------------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 354 T----------------------------------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred h----------------------------------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 9 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 047480 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398 (719)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 398 (719)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.+..+.++.|+..+|+.++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999955566899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 399 TALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 399 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
+|.++|++++.. |+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+
T Consensus 480 eA~~~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 480 EAYAMIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999998754 8888899999999999999999999888864 4565 45888888899999999999999999888
Q ss_pred cCCcc
Q 047480 478 YGIKP 482 (719)
Q Consensus 478 ~g~~p 482 (719)
.|+..
T Consensus 557 ~g~~k 561 (697)
T PLN03081 557 KGLSM 561 (697)
T ss_pred cCCcc
Confidence 88753
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-63 Score=561.86 Aligned_cols=494 Identities=15% Similarity=0.221 Sum_probs=404.4
Q ss_pred HHHHHHhc---cChHHHHHHHHHHHHhCCCh--hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHc
Q 047480 11 LLALLESC---KSLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSR 85 (719)
Q Consensus 11 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 85 (719)
+..++..| ++++.|.++++.|.+.|+.+ ...++.++..|.+ . |.+++|.++|+.|+.||..+||.+|.+|++
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~-g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--Q-RAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--C-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 44444444 69999999999999999654 5677889999999 8 999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 165 (719)
.|++++|+++|++|.+.|+. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCC----CCChhhHHHHHHHHHcCCCcchHHHHHHHHHH--CCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 047480 166 VFEGSL----ARDLVSYNTLINGYAQVKEPCPALWLFRKMQD--SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239 (719)
Q Consensus 166 ~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 239 (719)
+|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|+++.|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999985 47999999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHH
Q 047480 240 LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTA 315 (719)
Q Consensus 240 ~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~ 315 (719)
++.|+..+|+.+|.+|++.|++++|.++|++|.+ ||.++|++
T Consensus 609 ----------------------------------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 609 ----------------------------------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred ----------------------------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6666666666666666666666666666666653 56666666
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
+|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|+ .+.+.++.||..+||+||++|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~-eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 666666666666666666666666666666666666666666666666666666 5555666666666666666666666
Q ss_pred ChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------------
Q 047480 396 SIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH------------ 461 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------------ 461 (719)
++++|.++|++|... .||..+|++++.+|++.|+.++|.++|.+|.+.|+.||..+|++++..|.+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666666666666543 566666777777777777777777777777766677776666666654331
Q ss_pred -----------cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 047480 462 -----------GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP---YDANSVIWRALLAACR 527 (719)
Q Consensus 462 -----------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p~~~~~~~ll~~~~ 527 (719)
.+..++|..+|++|.+.|+.||..+|+.++.++.+.+..+.+..+++.|. ..|+..+|++|+.+|.
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 12346799999999999999999999999998889999999999998884 5567889999999984
Q ss_pred hcCChhHHHHHHHHHhcc
Q 047480 528 LHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~ 545 (719)
+. .++|..+++++.+.
T Consensus 894 ~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASL 909 (1060)
T ss_pred cC--hHHHHHHHHHHHHc
Confidence 32 36899999998763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-32 Score=321.18 Aligned_cols=551 Identities=13% Similarity=0.018 Sum_probs=425.1
Q ss_pred HHHhccChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCch
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQ 90 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 90 (719)
++...++++.|...+..+++........+..+...+.+ . |++++|...++.+.. .+...|+.+...+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR--L-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--C-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 34445688999999998888776556667778888888 7 999999998887643 35567888888999999999
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 170 (719)
+|.+.|+++.+.. |.+...+..+...+...|+++.|.+.+..+.+.. +........++..|.+.|++++|.++++.+
T Consensus 381 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 381 KAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999988765 2355567777777888889999999888888765 234455667778888888888888888876
Q ss_pred CC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCch
Q 047480 171 LA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM 247 (719)
Q Consensus 171 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 247 (719)
.. .+..+|+.+...|...|++++|...|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+. .+.+.
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 533 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNL 533 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcH
Confidence 53 356788888888888888888888888887643 233445666777778888888888888888776 46677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 047480 248 LLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQ 322 (719)
Q Consensus 248 ~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 322 (719)
.++..+...|.+.|+.++|...++++ ..+.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|..
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 78888888888888888888888887 3345566777888888888888888888887764 456678888888888
Q ss_pred cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 402 (719)
.|++++|+..|+++.+.. +.+...+..+..++...|+.++|..++. .+.+.. +.+...+..++..+.+.|++++|.+
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK-RALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887653 3355667777788888888888888888 444332 4556777888888888888888888
Q ss_pred HHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc
Q 047480 403 VFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481 (719)
Q Consensus 403 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 481 (719)
+++.+... +.+...|..+...+...|++++|++.|+++.+. .|+..++..+..++.+.|++++|.+.++.+.+.. +
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~ 767 (899)
T TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-P 767 (899)
T ss_pred HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 88887665 456667777888888888888888888888774 4555667777778888888888888888887532 3
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 45777778888888888888888888876 2 23456677777777878887 778888888888888888888888888
Q ss_pred HhhcCChHHHHHHHHHHHhCCC
Q 047480 560 LAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|...|++++|.++++++.+.+.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6e-32 Score=319.77 Aligned_cols=544 Identities=12% Similarity=0.026 Sum_probs=377.3
Q ss_pred cChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHH
Q 047480 19 KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVL 95 (719)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 95 (719)
++++.|...+..+++.+......+-.+...|.. . |+++.|...|+.... .+...+..+...+.+.|++++|+..
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~--~-g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L-GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH--c-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777777777776664432222233445555 5 777777777776532 2344566677777777778888777
Q ss_pred HHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---
Q 047480 96 YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA--- 172 (719)
Q Consensus 96 ~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--- 172 (719)
++++.... |.+...+..+...+...|++++|.+++..+.+.. +.+...+..+...|...|++++|.+.|+....
T Consensus 352 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 352 LSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 77777655 2455667777777777777777777777777654 34556667777777777777777777766443
Q ss_pred CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Q 047480 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~ 252 (719)
.+...+..++..+.+.|++++|+.+++.+... .+++..++..+...+...|+.+.|.+.+..+.+. .+.+...+..
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~ 504 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAAN 504 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHH
Confidence 23345566677777777777787777777653 3445566777777777777777777777777765 4555666777
Q ss_pred HHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 047480 253 VINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFS 327 (719)
Q Consensus 253 li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (719)
+...+...|++++|...++++ ..+.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|...|+++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 777777777777777777776 3344566777777777777777777777777643 34456667777777777788
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
+|+.+++++.... +.+..++..+..++...|++++|...+. .+.+.. +.+...+..+...|.+.|++++|...|+++
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK-KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887777776542 4456677777777777777777777777 333322 345566677777777777888887777776
Q ss_pred CCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhH
Q 047480 408 PKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486 (719)
Q Consensus 408 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 486 (719)
... +.+..+|..++..+...|++++|.++++.+.+.. +++...+..+...+...|++++|.+.|+.+... .|+...
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 554 4556677777777777778888887777777653 344556666777777777788887777777753 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
+..+..++.+.|++++|.+.++++ . .+.+..++..+...|...|+.++|...++++++..|+++..+..++.++...|
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 667777777778877777777766 2 22355566666667777777788888887777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhC
Q 047480 565 RWEEARQVRKLMDDS 579 (719)
Q Consensus 565 ~~~~A~~~~~~m~~~ 579 (719)
+ ++|..+++++.+.
T Consensus 819 ~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 819 D-PRALEYAEKALKL 832 (899)
T ss_pred c-HHHHHHHHHHHhh
Confidence 7 7777777777654
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=2.2e-32 Score=226.91 Aligned_cols=106 Identities=59% Similarity=1.003 Sum_probs=97.3
Q ss_pred cccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccChhhh--------hHhhhhhhHHHHH
Q 047480 586 GWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEK--------ETVVSYHSEKLAL 657 (719)
Q Consensus 586 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 657 (719)
|+||+++ |.|.+|+.+||+. ++..++...||.|++....|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999998 455667788999999999998888766 5688999999999
Q ss_pred HHHhhcCCCCCcEEEeccc-cccCchhHHHHHHhhhcCceEEEecCCcccccC
Q 047480 658 AFGLINSRSKETIRITKNL-RICGDCHLAFKLLSEIYRREIMVRDAIRFHLFK 709 (719)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 709 (719)
|||++++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4e-23 Score=245.27 Aligned_cols=543 Identities=10% Similarity=0.017 Sum_probs=321.5
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccH-H----------------HHHH
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFI-W----------------NTLM 80 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~-~----------------~~li 80 (719)
+.+.+++....++...+..+.+...+...+.+ . |+.++|.+.+++..+ |+... + ..+.
T Consensus 43 ~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~--~-g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 43 REDLVRQSLYRLELIDPNNPDVIAARFRLLLR--Q-GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--C-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 77888888888877776666667777888888 7 999999999998754 43322 1 2334
Q ss_pred HHHHcCCCchHHHHHHHHhHhCCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047480 81 RGYSRSDSPQEALVLYTSMLSKGIVSPNNFT-FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY 159 (719)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 159 (719)
..+.+.|++++|++.|+++.+.. ||+... ...........++.++|...++.+++.. +.+...+..|..++...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 46888999999999999998766 244321 1111222234688999999999999886 5567788899999999999
Q ss_pred hhHHHHHHccCCCCCh------hhH-----------------HHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHH
Q 047480 160 INNAHKVFEGSLARDL------VSY-----------------NTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216 (719)
Q Consensus 160 ~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 216 (719)
.++|+..|+++..... ..| ...+..+-.....+.|...+.++......|+... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHH
Confidence 9999999987643211 111 1111111112222334444444333222222211 111
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCch---HHH----------
Q 047480 217 FSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKST---AAW---------- 282 (719)
Q Consensus 217 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~---~~~---------- 282 (719)
-.++...|+++.|...++.+++. .|.+..++..|...|.+.|++++|...|++. ...|+. ..|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 23344566677777777666664 4455666666667777777777777666665 222221 111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH---
Q 047480 283 --SSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA--- 354 (719)
Q Consensus 283 --~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--- 354 (719)
..+...+.+.|++++|...|++..+ .+...+..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 1223345566677777777766653 234455566666667777777777776666542 1122333333333
Q ss_pred ---------------------------------------HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 355 ---------------------------------------CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 355 ---------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
+...|+.++|.+.++ ...+.. +.+..++..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-QRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 333444444444444 222211 123334444444455555
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCcH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---------TFVTVLCACSHGGLV 465 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~ 465 (719)
++++|...|+++... +.+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555444332 2233333333333344444444444444432211111111 112233445556666
Q ss_pred HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
++|.++++. .+++...+..+.+.|.+.|++++|++.+++. ...| +...+..+...+...|+.++|+..++++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666551 2344556677788888888888888888876 3344 56677788888888888888888888888
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+..|+++..+..++.++...|++++|.++++.+....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888888888888887654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.8e-21 Score=231.31 Aligned_cols=547 Identities=13% Similarity=0.042 Sum_probs=399.9
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCCc
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDSP 89 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 89 (719)
++..-++.++|.+.+..+++..... .....-+...... . |+.++|.+.|+++.. | +...+..+...+...|++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~--~-g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL--P-AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC--C-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 4445568999999999988775544 2211111222233 4 889999999998864 4 445678888999999999
Q ss_pred hHHHHHHHHhHhCCCC---------------CCCcc---cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 047480 90 QEALVLYTSMLSKGIV---------------SPNNF---TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151 (719)
Q Consensus 90 ~~A~~~~~~m~~~g~~---------------~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 151 (719)
++|+..++++.+.... +++.. .+...+..+........+...+....+....|+. ....+.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHH
Confidence 9999999998764310 00000 1111122222222334455555544433323332 223445
Q ss_pred HHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC-ChhhHH------------H
Q 047480 152 HFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP-DAFTFV------------A 215 (719)
Q Consensus 152 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~------------~ 215 (719)
..+...|++++|+..|++... .+...+..|...|.+.|++++|+..|++..+..-.. +...+. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 667789999999999987543 377889999999999999999999999988753221 111111 1
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcC
Q 047480 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREG 293 (719)
Q Consensus 216 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g 293 (719)
.-..+...|++++|...++.+++. .|.+...+..+...|...|++++|.+.+++. .. +.+...+..+...|. .+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQV---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 233466889999999999999987 5667788889999999999999999999998 44 344567777888775 46
Q ss_pred CHHHHHHHHhhcCCCC------------hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-ChhHHHHHHHHHHccCC
Q 047480 294 KIERARQLFDQMDQRD------------LVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLRACVGLGA 360 (719)
Q Consensus 294 ~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~ 360 (719)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+...|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998876421 123555677888999999999999999876 44 45567788889999999
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC--Chh---------cHHHHHHHHHhCCC
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK--TVS---------LFNSIISGLAQHGL 429 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~---------~~~~li~~~~~~g~ 429 (719)
.++|...+++.+... +.+......+...+.+.|+.++|...++.++.... +.. .+..+...+...|+
T Consensus 511 ~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999544333 34455555566667889999999999999875311 111 12345667889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
.++|+++++. .+++...+..+...+.+.|++++|...|+.+.+.. +.+...+..++.+|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999872 23445567778888999999999999999999643 33478889999999999999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch------hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 510 MP-YDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA------HYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 510 ~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.. ..| +...+..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|...++....
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 73 445 4556777777888999999999999999998776543 566779999999999999999998864
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=2.3e-19 Score=203.52 Aligned_cols=537 Identities=10% Similarity=0.015 Sum_probs=302.7
Q ss_pred cChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccHHHHHHHHHHcCCCchHHHHHH
Q 047480 19 KSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFIWNTLMRGYSRSDSPQEALVLY 96 (719)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (719)
++..+|...+..+++..+....++..|...|.+ . |+.++|+..+++... |+-.-|..++..+ +++.+|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~--~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRH--F-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 488899999999999988778888999999999 8 999999999988754 4333333333333 7888888888
Q ss_pred HHhHhCCCCCCC-cccH---------------------------------------HHH-HHHHhccCCcHHHHHHHHHH
Q 047480 97 TSMLSKGIVSPN-NFTF---------------------------------------PFV-LNSCARLSSFKSGCQIHCHI 135 (719)
Q Consensus 97 ~~m~~~g~~~p~-~~~~---------------------------------------~~l-l~~~~~~~~~~~a~~~~~~~ 135 (719)
+++.... |+ ..++ ... .+.|...++++++..++..+
T Consensus 132 e~l~~~~---P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ---KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC---CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8887765 32 2222 122 44455566667777777777
Q ss_pred HHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCC-CChhhH
Q 047480 136 IKFGLEFDLFIRNALIHFYSI-FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQ-PDAFTF 213 (719)
Q Consensus 136 ~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~ 213 (719)
.+.+ +.+......|..+|.. .++ ++|..+++...+.|...+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 7766 3344445556566666 355 66766666544457778888899999999999999998887654222 444333
Q ss_pred HHHHH------------------------------HHhccCCcHHHHHHH-----------------------------H
Q 047480 214 VAMFS------------------------------ACTELNDPRIGKQFH-----------------------------A 234 (719)
Q Consensus 214 ~~ll~------------------------------a~~~~~~~~~a~~i~-----------------------------~ 234 (719)
.-.+. .+.+.++++.++++. .
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 32221 222222222222221 1
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCC----CchHHHHHHHHHHHhcCCH---HHHHHHHh---
Q 047480 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMS----KSTAAWSSMISGYTREGKI---ERARQLFD--- 303 (719)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~----~~~~~~~~li~~y~~~g~~---~~A~~~f~--- 303 (719)
.+.+. .+.+....-.+.-...+.|+.++|.++++.. ... .+....+-|+..|.+.+.+ ..+..+-.
T Consensus 367 ~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 367 LLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 11110 1112222233333344455566666666665 111 1233444566666665552 22222211
Q ss_pred ----------------------hcCC---C--ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 304 ----------------------QMDQ---R--DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 304 ----------------------~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
.... + +...|..+..++.. ++.++|+..|.+.... .|+......+..++.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH
Confidence 0000 1 33445555555544 5666666655555543 344433333344445
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
..|++++|...+. .+... +++...+..+...+.+.|+.++|...|++.... +.+...+..+.......|++++|+.
T Consensus 521 ~~Gr~eeAi~~~r-ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQ-KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHH-HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5666666666666 23222 222233444555566666666666666655442 1222222222223333466666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
.|++..+ ..|+...+..+..++.+.|++++|...++..... .|+ ...+..+...+...|++++|++.+++. ...
T Consensus 598 ~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 598 DLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6666665 2455555666666666666666666666666643 233 455555666666666666666666654 333
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 514 A-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-++..-..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 34456666666666666666666666666666666666666666666666666666655554433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.6e-21 Score=191.76 Aligned_cols=467 Identities=13% Similarity=0.109 Sum_probs=329.1
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 047480 60 RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139 (719)
Q Consensus 60 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 139 (719)
...+-|+..++-+.. -..|..-..+.|++.+|.+.....-+.. |.+......+-..+.+..+++...+--...++..
T Consensus 36 ~v~qq~~~t~~~~~~-~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~ 112 (966)
T KOG4626|consen 36 SVLQQFNKTHEGSDD-RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN 112 (966)
T ss_pred HHHHHhccCCccchh-HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc
Confidence 344445554443322 4456666778899999999887766665 2344455555555666666666655444444443
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHH
Q 047480 140 LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM 216 (719)
Q Consensus 140 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 216 (719)
+.-..+|..+.+.+-..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-
T Consensus 113 -~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 113 -PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 44567888899999999999999999998665 3678899999999999999999999988876 46776655443
Q ss_pred HHH-HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 047480 217 FSA-CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 217 l~a-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 295 (719)
+.- ....|.+.+|...+..+++. .+-= ..+|+.|...+...|++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~---qp~f--------------------------------AiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIET---QPCF--------------------------------AIAWSNLGCVFNAQGEI 234 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhh---CCce--------------------------------eeeehhcchHHhhcchH
Confidence 332 34467888888888877775 1111 23455555555555555
Q ss_pred HHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-ChhHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQRD---LVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 296 ~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
..|..-|++...-| ...|-.|...|...+.+++|+..|.+.... .| ..+.+..+...|...|.++.|...+++.
T Consensus 235 ~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykra 312 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRA 312 (966)
T ss_pred HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence 55555555554322 224555555555666666666666555543 33 2344555555556666666666666632
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG- 449 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 449 (719)
+... +.-...|+.|..++-..|++.+|.+.|.+.... +.-..+.+.|...|...|..++|..+|....+ +.|.-
T Consensus 313 l~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a 388 (966)
T KOG4626|consen 313 LELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFA 388 (966)
T ss_pred HhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhh
Confidence 2221 122445666777777777777777777766554 34456788888888889999999999888877 56765
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAAC 526 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~ 526 (719)
..++.|...|-+.|++++|...|++.++ +.|+ ...|+.|...|...|+.++|.+.+.+. .+.|. ....+.|...+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 4788888889999999999999998886 7788 788999999999999999999999876 56664 45788899999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
...|++.+|+..++.+++++||.+.+|-.++..+.--..|.+-.+.+++
T Consensus 467 kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999998888777777764433333
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.8e-19 Score=201.85 Aligned_cols=500 Identities=13% Similarity=0.017 Sum_probs=351.8
Q ss_pred CChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 047480 56 NGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132 (719)
Q Consensus 56 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 132 (719)
|++++|...|+...+ | +..++..+...|.+.|++++|+..+++..+.. |+...|..++... ++.++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHHHH
Confidence 999999999998754 3 45678899999999999999999999999887 7666666655333 8889999999
Q ss_pred HHHHHhCCCCChhHHHHHHHH--------HHhcCChhHHHHHHccCCCC--Chh-hHHHHHHHHHcCCCcchHHHHHHHH
Q 047480 133 CHIIKFGLEFDLFIRNALIHF--------YSIFGYINNAHKVFEGSLAR--DLV-SYNTLINGYAQVKEPCPALWLFRKM 201 (719)
Q Consensus 133 ~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m 201 (719)
+++++.. +.+..++..+... |.+.+...++++ .+...+ +.. ..-.+...|.+.|++++|++++.++
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999987 4556666666665 888877777777 333333 333 3444489999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHhc-cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCC----C
Q 047480 202 QDSCIQPDAFTFVAMFSACTE-LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM----S 276 (719)
Q Consensus 202 ~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~----~ 276 (719)
.+.+.. +..-...+-.++.. .++ +.+..++.. ....+..+..++++.|.+.|+.++|...++++.. .
T Consensus 209 ~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~------~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 209 RQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ------GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch------hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 987632 23334445556665 355 555555331 3446788888999999999987777766666510 0
Q ss_pred CchHH---------------------------------------------------------------------------
Q 047480 277 KSTAA--------------------------------------------------------------------------- 281 (719)
Q Consensus 277 ~~~~~--------------------------------------------------------------------------- 281 (719)
|+..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 11111
Q ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHhhcCC--C----ChhhHHHHHHHHHhcCC---hhHHHHH--
Q 047480 282 ------------------WSSMISGYTREGKIERARQLFDQMDQ--R----DLVSWTAMISGYSQVGG---FSQALEL-- 332 (719)
Q Consensus 282 ------------------~~~li~~y~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~~~-- 332 (719)
.--+.-...+.|+.++|.++|++... + +...-+-++..|..++. ..+++.+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 11111112234455555555555433 1 11123345555555544 2333222
Q ss_pred --------------------HHHhHh-cCC-CC--ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 333 --------------------FGKMES-LGI-HP--DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 333 --------------------~~~m~~-~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
...... .+. ++ +...+..+..++.. +..++|...+.+..... |+......+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA 516 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVA 516 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHH
Confidence 111111 111 22 34444555544444 67778888776444443 4444344445
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEE 467 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 467 (719)
..+...|++++|...|+++...+++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 55678999999999999877655556667788888999999999999999998753 5443 34444445566799999
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
|...+++.++ +.|+...|..+..++.+.|++++|++.+++. ...|+ ...+..+..++...|+.++|+..+++++++
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999986 3577889999999999999999999999987 45664 556777777899999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 546 EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=8.4e-19 Score=176.31 Aligned_cols=361 Identities=11% Similarity=0.110 Sum_probs=293.0
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHH-HHHHHH
Q 047480 210 AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAA-WSSMIS 287 (719)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~-~~~li~ 287 (719)
..+|..+.+.+...|+++.|...+..+++. -+..+..|..+..++...|+.+.|...+.+. .+.|+... .+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 345555666666666666666666666654 3445566666666777777777766666555 66777654 344556
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHH
Q 047480 288 GYTREGKIERARQLFDQMDQ--R-DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDF 363 (719)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~ 363 (719)
.....|++++|..-+.+..+ | -.+.|+.|...+-.+|+...|+..|++.... .|+ ...|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 66678999999998887664 3 3468999999999999999999999999874 454 3578888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
|...+...+... +....++..+...|-..|.++-|...|++..+. +.-...||.|..++-..|+..+|++.|.+...
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 998887333322 234566667778899999999999999998876 44466899999999999999999999999987
Q ss_pred cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HH
Q 047480 443 MGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VI 518 (719)
Q Consensus 443 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~ 518 (719)
+.|+. .+.+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|+.-+++. .++|+. ..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 46776 4889999999999999999999999886 5566 678899999999999999999999987 788864 58
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
++.+...|...|+++.|.+.+.++++.+|.-..++..|+.+|...|+..+|+.-++...+...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999999886543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.4e-17 Score=182.94 Aligned_cols=420 Identities=12% Similarity=-0.001 Sum_probs=277.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcc
Q 047480 147 RNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD-AFTFVAMFSACTEL 223 (719)
Q Consensus 147 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~ 223 (719)
+..+...|.+.|++++|.+.|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 34556666677777777777766332 45566667777777777777777777776653 343 33555566666777
Q ss_pred CCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 047480 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFD 303 (719)
Q Consensus 224 ~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (719)
|+++.|..-+..+... ....+... ..++..+........+...++.. +++...+..+.. |......+.+..-++
T Consensus 208 g~~~eA~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 208 GKYADALLDLTASCII--DGFRNEQS-AQAVERLLKKFAESKAKEILETK--PENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCccHHH-HHHHHHHHHHHHHHHHHHHHhcC--CCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 7777776666554443 11111111 11111111111112222222221 122222222222 222111111111111
Q ss_pred hcCCCCh---hhHHHHHHH---HHhcCChhHHHHHHHHhHhcC-CCC-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHc
Q 047480 304 QMDQRDL---VSWTAMISG---YSQVGGFSQALELFGKMESLG-IHP-DEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375 (719)
Q Consensus 304 ~m~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 375 (719)
...+.+. ..+..+... ....+++++|++.|++....+ ..| +...+..+...+...|++++|...+. .....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~-kal~l 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS-KSIEL 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHc
Confidence 1111111 111111111 123468999999999998764 334 34567777777888999999999999 44443
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 047480 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFV 453 (719)
Q Consensus 376 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 453 (719)
. +.....+..+...|...|++++|...|++.... +.+...|..+...+...|++++|+..|++..+. .|+ ...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 3 344667788889999999999999999987665 567889999999999999999999999999985 565 45777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-V-------IWRALLA 524 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~-------~~~~ll~ 524 (719)
.+...+.+.|++++|...|+..++.. +.+...+..+..+|...|++++|++.|++. ...|+. . .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 78888999999999999999998632 334788999999999999999999999885 344421 1 1222222
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.+...|++++|+..++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444699999999999999999999989999999999999999999999998754
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1e-18 Score=185.29 Aligned_cols=310 Identities=14% Similarity=0.118 Sum_probs=197.0
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh
Q 047480 80 MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD---LFIRNALIHFYSI 156 (719)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~ 156 (719)
...+...|++++|+..|+++.+.+ |.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 444567788888888888888876 23445677777778888888888888888776542221 2456777777788
Q ss_pred cCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHH
Q 047480 157 FGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233 (719)
Q Consensus 157 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 233 (719)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+.+...+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 8888888888877654 3556777777777778888888777777765432111100
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 047480 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDL 310 (719)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~ 310 (719)
....+..+...|.+.|++++|.+.|+++.+ .+.
T Consensus 179 --------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 179 --------------------------------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred --------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 011233444555566666666666665543 233
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
..+..+...|.+.|++++|++.|+++...+......++..+..++...|+.++|.+.+. .+.+.. |+...+..++..
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~-~~~~~~--p~~~~~~~la~~ 291 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR-RALEEY--PGADLLLALAQL 291 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC--CCchHHHHHHHH
Confidence 45666667777777777777777777654322223445566666666666666666666 333322 344444666777
Q ss_pred HHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 047480 391 YAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ---HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (719)
|.+.|++++|..+|+++....|+...++.++..+.. .|+.++++.++++|.+.+++|+.. ..|.+.|..
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 777777777777777655544666677776666553 457777777777777766666655 235555543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.3e-18 Score=182.60 Aligned_cols=294 Identities=11% Similarity=0.065 Sum_probs=203.2
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC---hhHHHHHHHHHHccCCh
Q 047480 288 GYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD---EVTMVAVLRACVGLGAL 361 (719)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 361 (719)
.+...|++++|...|.++.+ .+..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34555666666666666653 2333566666666666666666666666665321111 13455556666666677
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCC------hhcHHHHHHHHHhCCChhHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT------VSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 435 (719)
+.|..++. .+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+....++ ...|..+...+.+.|++++|+.
T Consensus 124 ~~A~~~~~-~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFL-QLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHH-HHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 77776666 333321 344556677777777777777777777776543111 1235566777888888889999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 436 VFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 436 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
.|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|.+.|++++|.+.++++ ...
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888874 344 44677777888888999999999988885432222456788888999999999999998887 456
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh---cCChHHHHHHHHHHHhCCCCCCCc
Q 047480 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE---TYRWEEARQVRKLMDDSGIQKPPG 586 (719)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 586 (719)
|+...+..+...+...|+.++|...++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7776777788888999999999999999999999875 44444444432 568999999999999988888885
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.1e-16 Score=166.53 Aligned_cols=543 Identities=12% Similarity=0.069 Sum_probs=386.0
Q ss_pred ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCC--C----CCccHHHHHHHHHHcCCCchHH
Q 047480 20 SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQID--N----PNIFIWNTLMRGYSRSDSPQEA 92 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~--~----~~~~~~~~li~~~~~~g~~~~A 92 (719)
+++.|.+.|..+++..+.. +++...---+|.| +++..|...|.... . ||+. -.+..++.+.|+.+.|
T Consensus 145 ~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk----kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPDNILALLGKARIAYNK----KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKA 218 (1018)
T ss_pred cHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc----ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhH
Confidence 4677888888888877665 5555544456676 89999999998842 1 3432 2333556688999999
Q ss_pred HHHHHHhHhCCCCCCCc-ccHHHHHHHH---hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHc
Q 047480 93 LVLYTSMLSKGIVSPNN-FTFPFVLNSC---ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168 (719)
Q Consensus 93 ~~~~~~m~~~g~~~p~~-~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 168 (719)
+..|.+.++.. |+. .++..|.-.- .....+..|.+++..+-+.. ..++.+.+.|.+.|.-.|+++.+..+.+
T Consensus 219 ~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 219 LLAFERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred HHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 99999999877 432 2322222111 12345667777777766655 6788899999999999999999998887
Q ss_pred cCCCCC------hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH--HHHHHHHhccCCcHHHHHHHHHHHHhh
Q 047480 169 GSLARD------LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF--VAMFSACTELNDPRIGKQFHAVVYKNL 240 (719)
Q Consensus 169 ~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~~ 240 (719)
.+...+ ..+|--+.++|-..|++++|...|.+-.. ..||.+++ .-+-+.+...|+++.+...|+.+.+.
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~- 371 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ- 371 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-
Confidence 765432 23577788999999999999999977665 34665444 44667788999999999999999987
Q ss_pred CCCCCchHHHHHHHHHHHhcC----ChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--------
Q 047480 241 GCVGSNMLLKTAVINMYAKCG----LMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMD-------- 306 (719)
Q Consensus 241 ~~~~~~~~~~~~li~~y~~~g----~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------- 306 (719)
.|.+..+...|...|...+ ..+.|..++.+. ..+.|...|-.+..+|-...-+. +..+|....
T Consensus 372 --~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 --LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGK 448 (1018)
T ss_pred --CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCC
Confidence 7777888888888888876 456677777665 44566777877777776544332 244443322
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc---CCCCCh-----h-HHHHHHHHHHccCChHHHHHHHHHHHHHcCC
Q 047480 307 QRDLVSWTAMISGYSQVGGFSQALELFGKMESL---GIHPDE-----V-TMVAVLRACVGLGALDFGKRLHQQYIENVVF 377 (719)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 377 (719)
.......|.+...+...|++++|...|.+.... ...+|. . +-..+.......++.+.|.+.+.+.+.+..
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp- 527 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP- 527 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-
Confidence 245567888888899999999999999988754 223333 2 223344555667789999999994444332
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTV 455 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l 455 (719)
.-+..|--+..+....+...+|...+..+... ..++..|+-+...|.....+..|.+-|+...+. ...+|..+..+|
T Consensus 528 -~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 -GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred -hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 11222222333333346777888888877654 567778888888888888888888877766543 234677777777
Q ss_pred HHHHhc------------cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 047480 456 LCACSH------------GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRA 521 (719)
Q Consensus 456 l~a~~~------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ 521 (719)
.+.|.. .+..++|+++|.+.++.. +.+...-+.+.-.++..|++.+|.++|.+.. ...+..+|-.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 775543 245678888888888643 4457777888889999999999999998873 2235678889
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcc--CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDL--EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
+...|...|++-.|+++|+..+.. ..+++.....|+.++.+.|+|.+|.+.........+
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999988763 345667888999999999999999988887776443
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.7e-16 Score=164.06 Aligned_cols=559 Identities=13% Similarity=0.051 Sum_probs=405.3
Q ss_pred ccchHHHHHHhcc-----ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHH
Q 047480 7 EHSSLLALLESCK-----SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLM 80 (719)
Q Consensus 7 ~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 80 (719)
+.+.++.+.++|. ++..+...+..++...+.. +-+.-.+-..+++ + |+.+.|...|....+-|...-++++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k--l-~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK--L-GMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh--c-cchhhHHHHHHHHHhcChhhHHHHH
Confidence 3445666778886 7889999999877665443 2221122245677 8 9999999999998775554444444
Q ss_pred HHHH---c---CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC--hhHHHHHHH
Q 047480 81 RGYS---R---SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD--LFIRNALIH 152 (719)
Q Consensus 81 ~~~~---~---~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~ 152 (719)
.... . ...+..++.++...-..+ +-|+...+.|.+-+.-.|++..+..+...++....... ...|--+..
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3221 1 234556777777766655 35778888899999999999999999999987753211 234566889
Q ss_pred HHHhcCChhHHHHHHccCCC--C-C-hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHHhccC---
Q 047480 153 FYSIFGYINNAHKVFEGSLA--R-D-LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAF-TFVAMFSACTELN--- 224 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~--- 224 (719)
+|-..|++++|...|-+... + + +..+--|...|.+.|+.+.+...|+..... .||.. |...+-..|+..+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhh
Confidence 99999999999999976443 2 2 445667889999999999999999999874 45544 5555555555553
Q ss_pred -CcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCCh------HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 047480 225 -DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM------NMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297 (719)
Q Consensus 225 -~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~------~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 297 (719)
..+.|..+.....+. .+.|...|-.+..+|....-+ ..|...+...+-.+.+.+.|.+...+...|.++.
T Consensus 394 ~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred HHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 456666666666665 688888999888888776664 4455556555666889999999999999999999
Q ss_pred HHHHHhhcCC-------CChh------hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH-HHHHHHHHHccCChHH
Q 047480 298 ARQLFDQMDQ-------RDLV------SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT-MVAVLRACVGLGALDF 363 (719)
Q Consensus 298 A~~~f~~m~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~ 363 (719)
|...|+.... +|.. +-..+...+-..++++.|.+.|+...+. .|+-+. |..++...-..+...+
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHH
Confidence 9999987653 2221 2223455666778999999999999886 565543 3333322234467788
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHh------------CC
Q 047480 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQ------------HG 428 (719)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~------------~g 428 (719)
|...+. .+.... ..++.+++-+.+.|.+...+..|.+-|+.+... .+|+.+.-+|.+.|.+ .+
T Consensus 549 a~~~lk-~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 549 ASLLLK-DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHH-HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 888887 333332 466677777888999999999998877666543 2455555555554443 24
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
..++|+++|.+.++.. +-|...-+.+.-.++..|.+.+|..+|.+..+.. .....+|-.+..+|..+|++..|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 5778999999888752 3355677788888899999999999999999654 2356678889999999999999999998
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh-------------------hcCC
Q 047480 509 SM----PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA-------------------ETYR 565 (719)
Q Consensus 509 ~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~g~ 565 (719)
.. -.+.+..+...|..++...|.+.+|...+..++.+.|.++..-+.++-... ..+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 76 223477788889999999999999999999999999999876665554443 2356
Q ss_pred hHHHHHHHHHHHhCCC
Q 047480 566 WEEARQVRKLMDDSGI 581 (719)
Q Consensus 566 ~~~A~~~~~~m~~~~~ 581 (719)
.++|.++|..|...+-
T Consensus 785 le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 785 LEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7888999999987654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=5.1e-16 Score=173.52 Aligned_cols=253 Identities=12% Similarity=0.035 Sum_probs=192.7
Q ss_pred cCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHH
Q 047480 292 EGKIERARQLFDQMDQR------DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFG 364 (719)
Q Consensus 292 ~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 364 (719)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46778888888776532 3446777778888888899999888888765 444 45677777788888889999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 047480 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM 443 (719)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 443 (719)
...+.+ +.+.. +.+..++..+...|...|++++|...|++.... +.+...|..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~-al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDK-ALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHH-HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888884 44332 455678888888999999999999999887765 556778888888999999999999999998874
Q ss_pred CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChh------HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047480 444 GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME------HYGCMVDLLARDGRLDEAYGLIQSM-PYDAN 515 (719)
Q Consensus 444 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~ 515 (719)
.|+ ...+..+...+...|++++|...|+......-..+.. .++.....+...|++++|.+++++. ...|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455 4678888888999999999999999988532111111 1222223344579999999999885 55564
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 516 -SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 516 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
...+..+...+...|++++|...++++.++.+...
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 45788888889999999999999999999887643
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.3e-15 Score=173.49 Aligned_cols=403 Identities=8% Similarity=-0.003 Sum_probs=241.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC-hhhHHHHH
Q 047480 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD-AFTFVAMF 217 (719)
Q Consensus 142 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 217 (719)
.+.....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|..+|++..+. .|+ ...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444444555666677888888887776543 23445777777788888888888888877653 333 34445555
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCH
Q 047480 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKI 295 (719)
Q Consensus 218 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~ 295 (719)
..+...|+.++|...++.+++. .|.+.. +..+...+...|+.++|...+++. ...| +...+..+...+.+.|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 5666777777777777777665 344444 555555556666666666665555 2222 333444455555555555
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH-----ccCCh---HHHHHH
Q 047480 296 ERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV-----GLGAL---DFGKRL 367 (719)
Q Consensus 296 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~~~~---~~a~~~ 367 (719)
+.|.+.++.... +...... + . .......+.... ..+.+ +.|.+.
T Consensus 167 e~Al~~l~~~~~-~p~~~~~-l------------------------~--~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRD-L------------------------E--ADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHH-H------------------------H--HHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 555555555443 1100000 0 0 000000111110 11112 444555
Q ss_pred HHHHHHHcCCCCChh--HHHHH---HHHHHhcCChHHHHHHHhcCCCCCCChh--cHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 368 HQQYIENVVFGRNIF--LTTAV---IDMYAKCGSIDTALSVFYKIPKNLKTVS--LFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 368 ~~~~~~~~~~~~~~~--~~~~l---i~~y~k~g~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
++.++......|+.. ...+. +-++...|++++|.+.|+.+....++.. .-..+...|...|++++|+..|+++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 542322212122211 11111 1233455788888888888766421111 1122456778888888888888887
Q ss_pred HHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-----------CccC---hhHHHHHHHHHHhcCCHH
Q 047480 441 ELMGLKPD-----GVTFVTVLCACSHGGLVEEGKQFFESMLNYG-----------IKPQ---MEHYGCMVDLLARDGRLD 501 (719)
Q Consensus 441 ~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~~~ 501 (719)
.+. .|. ......+..++...|++++|.++++.+.... -.|+ ...+..+..++...|+++
T Consensus 299 l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 299 FYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred hhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 653 222 2345555667778888888888888777431 0122 234556777888889999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|++.++++ ...| +...+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999988886 2334 56678888888888899999999999999999998888888888888999999999998888765
Q ss_pred C
Q 047480 580 G 580 (719)
Q Consensus 580 ~ 580 (719)
.
T Consensus 457 ~ 457 (765)
T PRK10049 457 E 457 (765)
T ss_pred C
Confidence 3
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.7e-16 Score=173.11 Aligned_cols=352 Identities=11% Similarity=-0.003 Sum_probs=214.8
Q ss_pred hcCChhHHHHHHccCCCC------ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 047480 156 IFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIG 229 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 229 (719)
+..+++.---+|..-++. +..-..-++..+.+.|++++|+.+++........+.. .+..+..+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 556666666666655542 2233444566677777777777777777665333222 233333444456777777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 047480 230 KQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-- 307 (719)
Q Consensus 230 ~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-- 307 (719)
...++.+.+. .|. +...+..+...+.+.|++++|...|++..+
T Consensus 96 ~~~l~~~l~~---~P~--------------------------------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 96 LQVVNKLLAV---NVC--------------------------------QPEDVLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred HHHHHHHHHh---CCC--------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776665 222 334455555555555666666665555543
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHH
Q 047480 308 -RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTA 386 (719)
Q Consensus 308 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 386 (719)
.+...|..+...+.+.|++++|...++++.... |+.......+..+...|++++|...+. .+.+....++......
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~-~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLAR-ALLPFFALERQESAGL 217 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCcchhHHHH
Confidence 233455555566666666666666666554432 222111111223455566666666665 3322221122233344
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHh
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGET----SIAVFREMELMGLKPDG-VTFVTVLCACS 460 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 460 (719)
+...+.+.|+.++|...|++.... +.+...+..+...|.+.|++++ |+..|++..+. .|+. ..+..+...+.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 455666777777777777776554 4556677777777888887775 77888887763 4554 47777777888
Q ss_pred ccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCChhHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRA-LLAACRLHRNAKIGEI 537 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~-ll~~~~~~g~~~~a~~ 537 (719)
..|++++|...+++..+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|..
T Consensus 296 ~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887753 344 556667778888888888888888776 34565544333 4455778888888888
Q ss_pred HHHHHhccCCCCc
Q 047480 538 AGQKLLDLEPDHG 550 (719)
Q Consensus 538 ~~~~~~~~~p~~~ 550 (719)
.++++++..|++.
T Consensus 374 ~l~~al~~~P~~~ 386 (656)
T PRK15174 374 VFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHhChhhc
Confidence 8888888888753
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=6.3e-15 Score=167.81 Aligned_cols=407 Identities=10% Similarity=-0.031 Sum_probs=233.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC---CCCChhhHHHHHHHHHcC
Q 047480 112 FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS---LARDLVSYNTLINGYAQV 188 (719)
Q Consensus 112 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~ 188 (719)
..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++. ...+...+..++..+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334444445555555555555554422 233334555555555555555555555552 222344455555556666
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHH
Q 047480 189 KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER 268 (719)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~ 268 (719)
|++++|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+. .|.+..++..+...+...+..+.|..
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 6666666666665543 232222444455555666666666666666654 44455555666777777777888887
Q ss_pred HHHHcCCCCchH------HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHhHhc
Q 047480 269 VFSTMGMSKSTA------AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF---SQALELFGKMESL 339 (719)
Q Consensus 269 ~~~~~~~~~~~~------~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~ 339 (719)
.+++....|+.. ....++..+...+ ....+++ ++|++.++.+.+.
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~--------------------------~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPT--------------------------RSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccc--------------------------cChhHHHHHHHHHHHHHHHHHhh
Confidence 777664344310 1111111111000 0111112 4555555555532
Q ss_pred -CCCCChh-HHHH----HHHHHHccCChHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 047480 340 -GIHPDEV-TMVA----VLRACVGLGALDFGKRLHQQYIENVVFG-RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412 (719)
Q Consensus 340 -g~~p~~~-t~~~----ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 412 (719)
...|+.. .+.. .+.++...++.++|...++ .+.+.+.+ |+. ....+...|...|++++|...|+++....|
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~-~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ-RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 1122111 1110 1223344456666666666 33333211 111 112245566677777777777766544312
Q ss_pred C-----hhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHH
Q 047480 413 T-----VSLFNSIISGLAQHGLGETSIAVFREMELMG-----------LKPDG---VTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 413 ~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
. ...+..+..++.+.|++++|.++++++.+.. -.|+. ..+..+...+...|++++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2234455556777778888887777777541 12342 234556667888999999999999
Q ss_pred HHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 474 SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 474 ~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
++.... +.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++.
T Consensus 384 ~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 384 ELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 998532 334778888999999999999999999987 45675 456666666788889999999999999999999875
Q ss_pred hH
Q 047480 552 HY 553 (719)
Q Consensus 552 ~~ 553 (719)
+.
T Consensus 463 ~~ 464 (765)
T PRK10049 463 VQ 464 (765)
T ss_pred HH
Confidence 43
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.1e-15 Score=167.92 Aligned_cols=315 Identities=10% Similarity=0.021 Sum_probs=170.6
Q ss_pred HHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccC
Q 047480 149 ALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA-FTFVAMFSACTELN 224 (719)
Q Consensus 149 ~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 224 (719)
.++....+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .|+. ..+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 345566788999999999987643 35566777778888899999999999999874 4544 45666667778889
Q ss_pred CcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCc-hHHHHHHHHHHHhcCCHHHHHHHH
Q 047480 225 DPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKS-TAAWSSMISGYTREGKIERARQLF 302 (719)
Q Consensus 225 ~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~-~~~~~~li~~y~~~g~~~~A~~~f 302 (719)
+.+.|...+..+.+. .|.+...+..+...|...|+.++|...++++ ...|+ ...+..+ ..+.+.|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLA---FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999998888876 3444555555555555555555555555544 22222 1222222 2244455555555555
Q ss_pred hhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCC
Q 047480 303 DQMDQR----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378 (719)
Q Consensus 303 ~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 378 (719)
+.+.+. +...+..+...+.+.|++++|+..|+++.... +
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-------------------------------------p 243 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-------------------------------------L 243 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------------------------C
Confidence 544331 11122233344445555555555555554432 2
Q ss_pred CChhHHHHHHHHHHhcCChHH----HHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDT----ALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTF 452 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~----A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 452 (719)
.+..++..+..+|...|++++ |...|++.... +.+...+..+...+...|++++|+..+++..+. .|+. ...
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 233334444444444454443 44444444333 233444555555555555555555555554442 2332 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
..+..++...|++++|...|+.+... .|+. ..+..+..++...|+.++|.+.+++.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444445555555555555554432 2222 12222334445555555555555443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.4e-14 Score=161.65 Aligned_cols=435 Identities=11% Similarity=-0.000 Sum_probs=213.7
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhh-HHHH--HHHHHcCCCcchHH
Q 047480 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVS-YNTL--INGYAQVKEPCPAL 195 (719)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~ 195 (719)
..+.|+++.|...+.++++........++ .++..+...|+.++|+..+++...++... +..+ ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 35677888888888888776522212344 77777777788888888887766553333 3333 44666678888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-
Q 047480 196 WLFRKMQDSCIQPD-AFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM- 273 (719)
Q Consensus 196 ~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~- 273 (719)
++|+++.+.. |+ ...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|+..++++
T Consensus 123 ely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 123 ALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888887643 33 344445556666777777777777766654 233333344444444445554566666666
Q ss_pred CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 274 GM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQR-DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 274 ~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
.. +.+...+..++....+.|-...|.++..+-+.- +...+.-+ . .+.|.+..+. +..|+..-
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~vr~----a~~~~~~~---- 260 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQVRM----AVLPTRSE---- 260 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHHhh----cccccccc----
Confidence 33 334556666666666666666666666654420 00000000 0 0000000000 00000000
Q ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCCC-hhH-HHHH---HHHHHhcCChHHHHHHHhcCCCCCC--ChhcHHHHHHHH
Q 047480 352 LRACVGLGALDFGKRLHQQYIENVVFGRN-IFL-TTAV---IDMYAKCGSIDTALSVFYKIPKNLK--TVSLFNSIISGL 424 (719)
Q Consensus 352 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~~~l---i~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~ 424 (719)
-.+..-.+.+..-++.++...+-.|. ... ..+. +-++.+.|+..++.+.|+.+..... ...+--++.++|
T Consensus 261 ---~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 ---TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 00000112222222211221111111 111 1122 2233445555555555555553211 112333445555
Q ss_pred HhCCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----------ccC---hh
Q 047480 425 AQHGLGETSIAVFREMELMG-----LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-----------KPQ---ME 485 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-----------~p~---~~ 485 (719)
...+++++|+.+|++..... ..++......|.-++...+++++|..+++.+.+... .|+ ..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 55555555555555554321 011112234455555555555555555555553100 011 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
.+..++..+.-.|++.+|++.++++ ..-| |...+..+...++..|+..+|+..++.+..++|++..+...++..+...
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 2333445555556666666665555 1222 4455555555555566666666666555555666555555666666666
Q ss_pred CChHHHHHHHHHHHhC
Q 047480 564 YRWEEARQVRKLMDDS 579 (719)
Q Consensus 564 g~~~~A~~~~~~m~~~ 579 (719)
|+|++|..+.+.+.+.
T Consensus 498 ~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 498 QEWHQMELLTDDVISR 513 (822)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 6666665555555443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.1e-13 Score=152.18 Aligned_cols=451 Identities=8% Similarity=-0.019 Sum_probs=307.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 047480 76 WNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF-TFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154 (719)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 154 (719)
|...| ...+.|++..|++.|++..+.. |+.. ....++..+...|+.++|...++..+... .........+...|
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 44444 3568999999999999999887 6642 33378888888899999999999988111 22233344446688
Q ss_pred HhcCChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 047480 155 SIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231 (719)
Q Consensus 155 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (719)
...|++++|.++|+++.+. |...+..++..|...++.++|++.+++.... .|+...+..++..+...++...|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8999999999999987653 5667778889999999999999999999874 5676666555444545566666999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 047480 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV 311 (719)
Q Consensus 232 i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~ 311 (719)
.++.+.+. .|.+...+..++....+.|-...|.++..+. |+.++-...... +.+.|.+..+.-..++..
T Consensus 191 ~~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 191 ASSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCHHHHHHH-----HHHHHHHHHhhccccccc
Confidence 99999987 6788899999999999999999999998875 222211111110 011222222111100000
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhc-CCCCCh-hH----HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESL-GIHPDE-VT----MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT 385 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (719)
.-. +---.+.|+.-++.+... +-.|.. .- ..-.+-++...++..++...++ .+...+.+.-..+-.
T Consensus 260 ----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~-~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 260 ----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE-AMEAEGYKMPDYARR 331 (822)
T ss_pred ----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhhcCCCCCHHHHH
Confidence 000 000124445555554431 111221 11 1123445566677777777776 566555444445666
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-------------C
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKN-------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-------------L 445 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~ 445 (719)
++.++|...++.++|..+|..+... +++......|.-+|...+++++|..+++++.+.- .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 7777777777777777777766432 1123334667778888888888888888887631 1
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 047480 446 KPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRAL 522 (719)
Q Consensus 446 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l 522 (719)
.||-. .+..+...+...|++.+|++.++.+.... +-|......+.+++...|.+.+|++.++.. ...|+ ..+....
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 22333 34445667888999999999999998543 456888999999999999999999999876 35665 4456666
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
..+....+++++|..+.+.+.+..|+++.+-
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7778888999999999999999999987443
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=4.6e-12 Score=129.25 Aligned_cols=497 Identities=12% Similarity=0.115 Sum_probs=395.0
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 151 (719)
++..|-.. +.....+.|.-++.+..+-- |.+ .-|.-++++...++.|+.++..+.+. ++.+..+|.+-.
T Consensus 379 sv~LWKaA----VelE~~~darilL~rAvecc---p~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 379 SVRLWKAA----VELEEPEDARILLERAVECC---PQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred hHHHHHHH----HhccChHHHHHHHHHHHHhc---cch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 34446543 34456666887887777644 322 23455667777788888888877654 466777777666
Q ss_pred HHHHhcCChhHHHHHHccCC--------CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHh
Q 047480 152 HFYSIFGYINNAHKVFEGSL--------ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD--AFTFVAMFSACT 221 (719)
Q Consensus 152 ~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~ 221 (719)
..=-..|..+...++.++.. .-|...|-.=...+-..|..-.+..+....+..|+.-. ..||..--..|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 66667788888887776522 12455676666777777777777777777777666543 358888888999
Q ss_pred ccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHH
Q 047480 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERAR 299 (719)
Q Consensus 222 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~ 299 (719)
+.+.++-++.+|..+++. ++.+..+|...+..--..|..+....+|++. ..+.....|-....-+-..|++..|+
T Consensus 528 k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999986 8899999999999999999999999999998 56667778888888888999999999
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC
Q 047480 300 QLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 300 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 376 (719)
.++.+.-+ .+...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..--.++..++|.+++++.+...
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f- 681 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF- 681 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 99988765 35567888888899999999999999998874 6777777766666667889999999998555443
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 377 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
+.-...|..+.+.|-+.++++.|.+.|..-... |..+..|-.+...--+.|+.-.|..+|++.+-.+ +-|...|...
T Consensus 682 -p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 682 -PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred -CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 345567888899999999999999999887766 5566689888888888999999999999988763 3456789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 535 (719)
+..=.+.|..++|..+..++++. ++.+...|.--|.+..+.++-..+.+.+++... |+.+.-++...+....+++.|
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988842 456678899899999999988888888888754 555555666667778899999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEE
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEH 592 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 592 (719)
...|+++++.+|++..+|..+-..+...|.-++-.++++...... |..|-.|+.+
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 999999999999999999999999999999999999999887643 5667777654
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.8e-12 Score=124.52 Aligned_cols=244 Identities=16% Similarity=0.191 Sum_probs=145.6
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALI 151 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 151 (719)
+..++..||.++++--..+.|.++|++-.....+ .+..+|+.++.+-. +..++.+..+|+.....||.+++|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 4445666666666666666666666666655554 56666666665543 222355666666666666666666666
Q ss_pred HHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH-HH
Q 047480 152 HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI-GK 230 (719)
Q Consensus 152 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-a~ 230 (719)
+..++.|+++.|++ .|++++.+|++-|+.|...+|..+|..+.+.++... +.
T Consensus 281 ~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 66666666666553 457788999999999999999999998888877644 44
Q ss_pred HHHHHHHHhhCC--CCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 047480 231 QFHAVVYKNLGC--VGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ- 307 (719)
Q Consensus 231 ~i~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~- 307 (719)
.+...+.....| +.| .-+.|...+..-++.+....+.+-|.++-.-...
T Consensus 334 ~~i~dI~N~ltGK~fkp----------------------------~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKP----------------------------ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred HHHHHHHHhhccCcccC----------------------------CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 444444433222 111 1112233344444444444555555444433321
Q ss_pred -------C---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC
Q 047480 308 -------R---DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 308 -------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 376 (719)
+ ...-|..+....++....+.-+.+|+.|...-+-|+..+...++++....+.++-..+++. .....|
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~-D~~~~g 463 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWK-DSKEYG 463 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHH-HHHHhh
Confidence 1 1123444555566666677777777777766666677777777777777777766666666 444433
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.2e-13 Score=134.59 Aligned_cols=469 Identities=13% Similarity=0.120 Sum_probs=303.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHH-HHHHHHhccCCcHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 047480 78 TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP-FVLNSCARLSSFKSGCQIHCHIIKFGLEFD----LFIRNALIH 152 (719)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~ 152 (719)
.|.+-|..+....+|+..|+-+.+.... ||.-.+- .+.+.+.+.+.+..|..+++.++..-...+ ..+.+.+.-
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 4556677778889999999998888777 7765432 344556778889999999988876542222 234455555
Q ss_pred HHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHH--------HHHHHHhc
Q 047480 153 FYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFV--------AMFSACTE 222 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--------~ll~a~~~ 222 (719)
.+.+.|++++|..-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||...|. .++.-..+
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 67788999999999987543 566554445555666788899999999998755444444331 11111111
Q ss_pred cC--------CcHHHHHHHHHHHHh-hCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCC-CCchHHHHHHHHHHHhc
Q 047480 223 LN--------DPRIGKQFHAVVYKN-LGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM-SKSTAAWSSMISGYTRE 292 (719)
Q Consensus 223 ~~--------~~~~a~~i~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~-~~~~~~~~~li~~y~~~ 292 (719)
.. +-..|++..-...+. .+-+.||-.. | .+-.++.++.... +.-...-..-..-|.+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 10 011111111111111 0001111100 0 0111111111100 00000011112347889
Q ss_pred CCHHHHHHHHhhcCCCChhhHH----HHH-HHHHhcC-ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 293 GKIERARQLFDQMDQRDLVSWT----AMI-SGYSQVG-GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 293 g~~~~A~~~f~~m~~~~~~~~~----~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
|+++.|.+++.-...+|..+-. .+- --|.+-| ++.+|.+.-+...... +-|....+.--+.....|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 9999999988887765544322 222 2233333 4666666655554322 2233333333333445789999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
.+. ......-.-...+|| +.-.+-+.|++++|++.|-++... ..++...-.+.+.|-...++..|++++.+... +
T Consensus 512 ~yk-eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--l 587 (840)
T KOG2003|consen 512 FYK-EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--L 587 (840)
T ss_pred HHH-HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--c
Confidence 998 444333222222233 334577899999999999876544 36777777888889999999999999977665 4
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 047480 446 KPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALL 523 (719)
Q Consensus 446 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll 523 (719)
.|+ ...+.-|...|-+.|+-.+|.+.+-.--++ ++-+.++...|...|....-+++|+.+|++. -++|+.+-|..++
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 554 567888888999999999999987654433 4556889999999999999999999999998 4789999999999
Q ss_pred HHH-HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 524 AAC-RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 524 ~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
..| ++.|++++|+..++......|.+....-.|..++...|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 886 677999999999999999999999989999999988885
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=4.9e-11 Score=126.85 Aligned_cols=543 Identities=12% Similarity=0.111 Sum_probs=362.3
Q ss_pred HHHhccChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccC---CCCCccHHHHHHHHHHcCCCch
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQI---DNPNIFIWNTLMRGYSRSDSPQ 90 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~ 90 (719)
.+-+-++++.|..+...+++..+..+..|-.|...|-. . |+.+++...+-.. ...|..-|-.+-....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq--r-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ--R-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--c-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 34444689999999999998876667778888888888 7 9998888766433 3345577888888888899999
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH----HHHHHhcCChhHHHHH
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL----IHFYSIFGYINNAHKV 166 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L----i~~y~~~g~~~~A~~~ 166 (719)
+|.-.|.+.++.. |++-..+---...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998877 355445555566677889999999988888877643333323333 4455566777888888
Q ss_pred HccCCC--C---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH----------------------H----H
Q 047480 167 FEGSLA--R---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF----------------------V----A 215 (719)
Q Consensus 167 f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~----------------------~----~ 215 (719)
++.-.. . +...+|.++..|.+...++.|......+......+|..-+ . -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 876543 2 4456889999999999999999998888762222222211 1 1
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc---CCCCchHHHHHHHHHHHhc
Q 047480 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSMISGYTRE 292 (719)
Q Consensus 216 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~---~~~~~~~~~~~li~~y~~~ 292 (719)
+.-++.+....+....+.....+.......+...+.-+.++|...|++..|+.++..+ ....+..+|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223445666777777777777762224556778999999999999999999999998 2233477999999999999
Q ss_pred CCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhHh--------cCCCCChhHHHHHHHHHHccCCh
Q 047480 293 GKIERARQLFDQMDQRDL---VSWTAMISGYSQVGGFSQALELFGKMES--------LGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 293 g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
|..+.|...|+.+..-+. ..--+|-+.+.+.|+.++|++.+..+.. .+..|+..........+.+.|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999998876333 3344566778999999999999998642 23445555555566667777776
Q ss_pred HHHHHHHH----HHHHHcCCCC-----------------ChhHHHHHHHHHHhcCChHHHHHHHhcC------CCCCCCh
Q 047480 362 DFGKRLHQ----QYIENVVFGR-----------------NIFLTTAVIDMYAKCGSIDTALSVFYKI------PKNLKTV 414 (719)
Q Consensus 362 ~~a~~~~~----~~~~~~~~~~-----------------~~~~~~~li~~y~k~g~~~~A~~~~~~~------~~~~~~~ 414 (719)
++=..+-. ....+.-+.| .......++.+-.+.++.....+-...- ....-+.
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 65333332 1111111111 1122223344444444432222211111 0000122
Q ss_pred hcH----HHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHH--HH-HHHHHHHhccCcHHHHHHHHHHHH-HcCCccC-
Q 047480 415 SLF----NSIISGLAQHGLGETSIAVFREMELMGL--KPDGV--TF-VTVLCACSHGGLVEEGKQFFESML-NYGIKPQ- 483 (719)
Q Consensus 415 ~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~- 483 (719)
.-| .-++..+++.++.++|+.+...+.+... .++.. .+ ...+.++...+++..|..+++.|. ..+...+
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 223 4567788999999999999988887532 22221 22 344566778999999999999998 4333323
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 484 --MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAA--CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 484 --~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
...|++..+...+.|+-.--.+++... ..+|+..-...++.| ....+.+.-|...+-++....|++|-+-.+++-
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 456776667777777655555555544 333443223333333 455678888999999999999999988777777
Q ss_pred HHh
Q 047480 559 MLA 561 (719)
Q Consensus 559 ~~~ 561 (719)
++.
T Consensus 783 afi 785 (895)
T KOG2076|consen 783 AFI 785 (895)
T ss_pred HHH
Confidence 664
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=9.2e-12 Score=121.03 Aligned_cols=416 Identities=15% Similarity=0.181 Sum_probs=250.7
Q ss_pred cHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHH--HhccCCcHHH-HHHHHHHHHhCCCCChhHHHHH
Q 047480 74 FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS--CARLSSFKSG-CQIHCHIIKFGLEFDLFIRNAL 150 (719)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 150 (719)
++=|+|+.. ...|...++.-+|+.|.+.|+. .+...-..+++. |-...++--+ .+-|-.|.+.| +.+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344555553 4567888888888888888864 554444444332 2222332221 22333333333 2222222
Q ss_pred HHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHH
Q 047480 151 IHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230 (719)
Q Consensus 151 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (719)
+.|.+.+ ++-+...+...++..||.|.++.-..+.|.+++++-.....+.+..+||.+|.+.+ +..++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 3344433 44444555778999999999999999999999999999889999999999998754 33448
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHH----HHHHc---CCCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 047480 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAER----VFSTM---GMSKSTAAWSSMISGYTREGKIERARQLFD 303 (719)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~----~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (719)
.+..+|+.. ...||..++|++++...+.|+++.|.+ ++.+| |+.|...+|..+|..+++.++..+
T Consensus 259 ~Lv~EMisq--km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k------ 330 (625)
T KOG4422|consen 259 KLVAEMISQ--KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK------ 330 (625)
T ss_pred HHHHHHHHh--hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh------
Confidence 889999988 677777777777777777776655332 22222 677777776666666655555433
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHh----HhcCCC---C-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHc
Q 047480 304 QMDQRDLVSWTAMISGYSQVGGFSQALELFGKM----ESLGIH---P-DEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375 (719)
Q Consensus 304 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~---p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 375 (719)
-|..++.+. ..+..+ | |..-|.+.+..|.++.+.+.|.++++ .....
T Consensus 331 ------------------------~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~-ll~tg 385 (625)
T KOG4422|consen 331 ------------------------VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHG-LLKTG 385 (625)
T ss_pred ------------------------hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHH-HHHcC
Confidence 122222222 112222 3 45567888899999999999999998 44432
Q ss_pred -C---CCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 047480 376 -V---FGRN---IFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446 (719)
Q Consensus 376 -~---~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (719)
+ +.++ .+.|..+.++.+....++.-...|+.|... .|+..+-.-++.+..-.|.++-.-+++..|+..|-.
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 1 1222 345667888888888899999999988765 566666777777888888888887888887776633
Q ss_pred CCHHHHHHHHHHHhccC--------------------cHHHHH-HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 047480 447 PDGVTFVTVLCACSHGG--------------------LVEEGK-QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g--------------------~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 505 (719)
-+...-.-++.-.++.. ++.++. .--.++.+ ........++..-++.|.|+.++|.+
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHH
Confidence 33332222222222221 001110 01111221 23445566677777777777777777
Q ss_pred HHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047480 506 LIQSM-------PYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 506 ~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (719)
++.-. +..|......-+..+..+.++.-.|..+++-+
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 76543 22232222233344444444444444444444
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.8e-10 Score=113.57 Aligned_cols=496 Identities=12% Similarity=0.097 Sum_probs=315.2
Q ss_pred ccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 73 IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
...|-....--...+++..|.++|++.+.... .+...|..-+..=.+...+..|+.+++.++..-...| ..|-.-+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 33444444444455666677777777665432 2333444444444456666777777777665532222 23333444
Q ss_pred HHHhcCChhHHHHHHccCC--CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHH
Q 047480 153 FYSIFGYINNAHKVFEGSL--ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (719)
|=-..|++..|+++|++-. +|+...|++.|..-.+.+.++.|..++++..- +.|+..+|.--.+.=.+.|....++
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 4445577777777777632 46777777777777777777777777777665 3477777766666666677777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCc--hHHHHHHHHHHHhcCCHHHHHHHH----
Q 047480 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKS--TAAWSSMISGYTREGKIERARQLF---- 302 (719)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~--~~~~~~li~~y~~~g~~~~A~~~f---- 302 (719)
+++..+++..+.-..+...+++....-..+..++.|..+++-. .++.+ ...|..+...=.+.|+...-....
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 7777777664333334455666666666666666666665544 22332 455666666656666654443332
Q ss_pred ----hhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh--h-----HHHHHHHHH---HccCChHHHH
Q 047480 303 ----DQMDQR---DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE--V-----TMVAVLRAC---VGLGALDFGK 365 (719)
Q Consensus 303 ----~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~-----t~~~ll~a~---~~~~~~~~a~ 365 (719)
+.+... |-.+|-..+..-...|+.+...++|++.... ++|-. . .|.-+=-+| ....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222 4457777777777788999999999988865 45522 1 121111122 3567888899
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHH----hcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHH
Q 047480 366 RLHQQYIENVVFGRNIFLTTAVIDMYA----KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREME 441 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 441 (719)
++++ ...+ -++...+++.-+=-+|+ ++.++..|.+++.......|-..++...|..-.+.++++....++++.+
T Consensus 387 ~vyq-~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQ-ACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHH-HHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998 4444 34455566655544554 6789999999998776655777788888888889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH-cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 047480 442 LMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN-YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIW 519 (719)
Q Consensus 442 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~ 519 (719)
+.+ +-|..+|......=...|+.+.|+.+|.-++. ..+......|.+.|+-=...|.++.|..++++. ...+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 853 33456777777667778999999999998884 333444567777888888899999999999887 334556678
Q ss_pred HHHHHHHH-----hcC-----------ChhHHHHHHHHHhc----cCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 520 RALLAACR-----LHR-----------NAKIGEIAGQKLLD----LEPDHGA--HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 520 ~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
-++..--. +.+ ++..|..+|+++.. ..|.... .....-++-...|...+...+-..|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 77764422 233 56678888888764 3342211 22233344455666666666666664
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.3e-09 Score=111.80 Aligned_cols=512 Identities=10% Similarity=0.035 Sum_probs=352.3
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCCchHHHHHH
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDSPQEALVLY 96 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 96 (719)
+...-+++.+..+..-+.+..+|-.-+ . . ...++|+.++.+..+ | +...|. +|++..-|+.|..++
T Consensus 361 ~~~~K~RVlRKALe~iP~sv~LWKaAV----e--l-E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPRSVRLWKAAV----E--L-EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHH----h--c-cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHH
Confidence 334444444444444433345554333 2 3 445557666665543 2 223333 444555566777777
Q ss_pred HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC-
Q 047480 97 TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII----KFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSL- 171 (719)
Q Consensus 97 ~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~- 171 (719)
+..++.= |.+...|.+....=-..|+.+....+.+..+ ..|+..+...|-.=...+-+.|..-.+..+.....
T Consensus 430 NkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig 507 (913)
T KOG0495|consen 430 NKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG 507 (913)
T ss_pred HHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Confidence 7766543 2556666665555556666666666654433 34655555555555555555555555554444322
Q ss_pred ----CC-ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCc
Q 047480 172 ----AR-DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSN 246 (719)
Q Consensus 172 ----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~ 246 (719)
+- --.+|+.-...|.+.+.++-|..+|...++. ..-+...|..+...--..|..+.-..+++.++.. .|..
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pka 583 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKA 583 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcc
Confidence 11 2356777777777777777777777776653 2334445555555555567777777777777765 5555
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHh
Q 047480 247 MLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQ 322 (719)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~ 322 (719)
...+-....-+-..|+...|..++.+. -.+.+...|-+-+..-.....++.|+.+|.+... +....|..-+..---
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY 663 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence 666666677777778887777777776 3344667888888888899999999999988764 566677766666677
Q ss_pred cCChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 401 (719)
.++.++|++++++.++. -|+- ..|..+-+.+.+.++++.|+..|. .-.+ ..+..+..|-.|.+.=-+.|.+-.|+
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~-~G~k-~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL-QGTK-KCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH-hccc-cCCCCchHHHHHHHHHHHhcchhhHH
Confidence 78899999999888875 4554 456677788888899999998887 2222 23566778888999999999999999
Q ss_pred HHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 402 SVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 402 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
.+|++..-. |.|...|-..|..-.+.|+.+.|..+..+.++. ++-+...|..-|...-+.+.-......+ .+ .
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kk--c 813 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK--C 813 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---Hh--c
Confidence 999987654 788999999999999999999999999988875 4445567777777666666643333333 23 4
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
+-|....-.+..++-...+++.|.+.|.+. ...|| ..+|.-+..-+.+||.-+.-..++.+...-+|.....|...+.
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 567777777888899999999999999987 45554 5689999999999999999999999999999988766665543
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1e-11 Score=131.96 Aligned_cols=352 Identities=15% Similarity=0.103 Sum_probs=244.8
Q ss_pred hccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHH
Q 047480 221 TELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERA 298 (719)
Q Consensus 221 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A 298 (719)
...|+++.|..++.++++. .|.+...|..|...|-..|+.+++...+-.. -.+.|...|..+.+...+.|.++.|
T Consensus 150 farg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3349999999999999987 6778888999999999999999888776655 4456678999999999999999999
Q ss_pred HHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh----hHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 299 RQLFDQMDQR---DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDE----VTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
.-.|.+..+. +....---+..|-+.|+...|++.|.++.....+.|. .+...+++.+-..++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999988763 3333344567788999999999999999876421122 22333445555566667777766655
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHH------HHHHHhCCChhHHHHHHHHHHHc
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSI------ISGLAQHGLGETSIAVFREMELM 443 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~ 443 (719)
..+.+-..+....+.++.+|.+...++.|.......... .+|..-|-+- ...++.. ..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~--------------~~ 372 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV--------------GK 372 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC--------------CC
Confidence 554444445555666667777666666666555443321 1222222100 0000000 01
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHH
Q 047480 444 GLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI--KPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD---ANSVI 518 (719)
Q Consensus 444 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~---p~~~~ 518 (719)
++.++...+.. .-++.+....+....+.....+..+ .-+...|.-+.++|.+.|++.+|++++..+... .+..+
T Consensus 373 ~~s~~l~v~rl-~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVIRL-MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhHhH-hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12333333122 2233344444444444444555553 344778999999999999999999999998322 25679
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEE
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 590 (719)
|--+...+...|..++|.+.+++++.+.|++..+-+.|+.+|.++|+.|+|.+++..+..-+-...+++.|-
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999875444444566653
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2.2e-12 Score=125.82 Aligned_cols=278 Identities=12% Similarity=0.156 Sum_probs=184.6
Q ss_pred HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHh--cCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCH
Q 047480 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK--CGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 220 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~ 295 (719)
+.+.|+++.|.+++....+. ....-....|.|-..+.- -.++.+|..+.+.. .+ .-++...+.-.+.-...|++
T Consensus 429 ~lk~~d~~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 34566666666666666554 222222222323222222 22345555554443 11 12222222222334457889
Q ss_pred HHHHHHHhhcCCCChhhHHHHH---HHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQRDLVSWTAMI---SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYI 372 (719)
Q Consensus 296 ~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 372 (719)
++|.+.+.+....|...-.++. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+++. .
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~-q- 583 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM-Q- 583 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH-H-
Confidence 9999999888877665433332 2456778899999998877542 23456677788888888888888888876 2
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 047480 373 ENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVT 451 (719)
Q Consensus 373 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 451 (719)
...-++.|+.+.+-|.+.|-+.|+-..|.+.+-.--.. +-|..+..-|..-|....-+++|+.+|++..- ++|+..-
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 23345678888899999999999988888776543333 56777777777888888888999999988765 6899998
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 047480 452 FVTVLCACS-HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGL 506 (719)
Q Consensus 452 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 506 (719)
|..++..|. +.|++.+|..+|+..-+ .++.|.....-|+...+..|.- +|.++
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~-d~key 715 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLK-DAKEY 715 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccch-hHHHH
Confidence 888877654 68999999999988873 2567788888888888887743 34443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.3e-14 Score=143.91 Aligned_cols=256 Identities=17% Similarity=0.134 Sum_probs=113.1
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH-HHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA-VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++ .+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~-~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYE-KLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc-ccccccccccccc-cccc
Confidence 4445566666666666654433322333333333 3334445666667776666 333333 1244455666666 6788
Q ss_pred ChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
++++|.+++...-+..++...|..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887765544677788888999999999999999999987543 344566788888889999999999999999
Q ss_pred HHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 475 MLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 475 m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.++. .|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9974 465 7788899999999999999888877662 2346678899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
....+++++...|+.++|.+++++.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=8e-11 Score=116.66 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=134.4
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVE 466 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 466 (719)
.+|....+.++-+..|+...+. +.|..+|.--...+.-.+++++|..=|++.++ +.|+. ..|..+..+..+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544433 34455555555555556667777777777776 45654 47777777777888899
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChhHHH
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN---------SVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~a~ 536 (719)
++...|++.++. ++.-++.|+.....+...++++.|.+.|+.. ..+|+ +.+-.+++-. +-.+++..|+
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~ 523 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHH
Confidence 999999988842 4445888888899999999999999998875 34443 2233333322 2238999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+++++++++|....+|..|+.+-...|+.++|+++|++-.
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.4e-11 Score=127.13 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=215.6
Q ss_pred CHHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChhHHHHHHHHhHhcC-C-CCChhHHHHHHHHHHccCChHHHHHHH
Q 047480 294 KIERARQLFDQMDQ--RDLV-SWTAMISGYSQVGGFSQALELFGKMESLG-I-HPDEVTMVAVLRACVGLGALDFGKRLH 368 (719)
Q Consensus 294 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 368 (719)
+..+|...|...+. +|.. ....+..+|...+++++|.++|+...+.. . .-+...|++++.-+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788888888654 3433 33456788999999999999999988742 1 1255678887766532 2233333
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 047480 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 447 (719)
.+.+.+.. +..+.+|.++.+.|.-+++.+.|++.|++..+. +....+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 32333332 466789999999999999999999999998875 44667888888888999999999999998875 456
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047480 448 DGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALL 523 (719)
Q Consensus 448 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll 523 (719)
... .|-.+...|.+.++++.|.-.|+.+++ +.|. .....++...+.+.|+.|+|+++++++ ..+| |+..----.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 553 777888899999999999999999987 4455 667777888999999999999999997 3444 333333333
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..+...+++++|+..+|++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+-.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 445667899999999999999999999999999999999999999999888887654
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.6e-09 Score=104.64 Aligned_cols=405 Identities=14% Similarity=0.118 Sum_probs=225.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047480 143 DLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219 (719)
Q Consensus 143 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 219 (719)
+...|-.-...=...+++..|+.+|++... ++...|--.+..-.++.++..|..++++....=...|..=|- -+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 333443333333445677889999987543 677888888998899999999999999887632222332222 2222
Q ss_pred HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 047480 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERAR 299 (719)
Q Consensus 220 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 299 (719)
=-.+|++..|+++|..-.+ ..|+...|++.|+.=.+-..++.|.
T Consensus 151 EE~LgNi~gaRqiferW~~------------------------------------w~P~eqaW~sfI~fElRykeieraR 194 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME------------------------------------WEPDEQAWLSFIKFELRYKEIERAR 194 (677)
T ss_pred HHHhcccHHHHHHHHHHHc------------------------------------CCCcHHHHHHHHHHHHHhhHHHHHH
Confidence 2346777777777776654 3555555555555555555555555
Q ss_pred HHHhhcC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc-CC-CCChhHHHHHHHHHHccCChHHHHHHHHHHHHHc
Q 047480 300 QLFDQMD--QRDLVSWTAMISGYSQVGGFSQALELFGKMESL-GI-HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV 375 (719)
Q Consensus 300 ~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 375 (719)
.++++.. .|++.+|--....-.++|+...|..+|....+. |- ..+...|.+...--.+...++.|..++. +....
T Consensus 195 ~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk-yAld~ 273 (677)
T KOG1915|consen 195 SIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK-YALDH 273 (677)
T ss_pred HHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 5555433 355555555555555555555555555554432 10 0011122222222223344555555555 44332
Q ss_pred CCC-CChhHHHHHHHHHHhcCChHHHHHH--------HhcC-CCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 376 VFG-RNIFLTTAVIDMYAKCGSIDTALSV--------FYKI-PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 376 ~~~-~~~~~~~~li~~y~k~g~~~~A~~~--------~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
-.. ....++..++..=-+-|+.....++ ++.+ ..++-|-.+|--.+..-...|+.+...++|++.+.. +
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-v 352 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-V 352 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-C
Confidence 211 1123333333333333433322222 1222 222456666766666666667777777777777754 4
Q ss_pred CCCHH--HHHHHH-----HH---HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH----hcCCHHHHHHHHHhC-
Q 047480 446 KPDGV--TFVTVL-----CA---CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA----RDGRLDEAYGLIQSM- 510 (719)
Q Consensus 446 ~p~~~--t~~~ll-----~a---~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~eA~~~~~~~- 510 (719)
+|-.. .|...| -+ =....+++.+.++|+..++. ++....++.-+--+|+ |+.++..|.+++-..
T Consensus 353 pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 353 PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 55221 111111 11 12356677777777776651 2333455555444443 566777777777554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcc
Q 047480 511 PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGW 587 (719)
Q Consensus 511 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 587 (719)
+.-|-.-++...|..-.+.++++....++++.++..|.+..++...+..-...|+++.|+.+|+...+....-.|..
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 55566677777777767777777777777777777777777777777777777777777777777766554333433
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=4.6e-10 Score=118.06 Aligned_cols=247 Identities=12% Similarity=0.087 Sum_probs=131.0
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHH--HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMV--AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 398 (719)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|.+.++ ...+.. +.++.+...+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~-~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVD-KLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555555442 33332221 22334445555555555555 333222 334455555555555556666
Q ss_pred HHHHHHhcCCCC-CCChh--------cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 047480 399 TALSVFYKIPKN-LKTVS--------LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469 (719)
Q Consensus 399 ~A~~~~~~~~~~-~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (719)
+|.+++..+.+. ..+.. .|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666555555443 11111 2222333333333444455555544332 2334455666666666777777777
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
+.+++..+. .|+.... ++......++.+++.+.+++. ...|+ .....++...|...+++++|...++++++..|
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 777666652 3333221 122222346677777666665 33443 33455556667777777777777777777777
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 456677777777777777777777654
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=1.8e-08 Score=107.16 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=63.4
Q ss_pred CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Q 047480 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~ 252 (719)
++..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.+|-+ .++....+.+...|... |+.|+..++..
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ad 276 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQAD 276 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHH
Confidence 57778888888888889999999999999999888888777766654 67777777888888777 78888777765
Q ss_pred HHHHHHh
Q 047480 253 VINMYAK 259 (719)
Q Consensus 253 li~~y~~ 259 (719)
-+-...+
T Consensus 277 yvip~l~ 283 (1088)
T KOG4318|consen 277 YVIPQLS 283 (1088)
T ss_pred HHHhhhc
Confidence 4444444
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=2.1e-10 Score=120.68 Aligned_cols=281 Identities=10% Similarity=0.010 Sum_probs=215.5
Q ss_pred hcCChHHHHHHHHHc-CCCCchHHHHHH-HHHHHhcCCHHHHHHHHhhcCC--CChhhHH--HHHHHHHhcCChhHHHHH
Q 047480 259 KCGLMNMAERVFSTM-GMSKSTAAWSSM-ISGYTREGKIERARQLFDQMDQ--RDLVSWT--AMISGYSQVGGFSQALEL 332 (719)
Q Consensus 259 ~~g~~~~a~~~~~~~-~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 332 (719)
-.|+++.|.+.+.+. ...+++..+..+ .....+.|+++.|...|.++.+ |+....- .....+...|++++|.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 369999999998876 222333444333 3444789999999999999876 3332222 335678899999999999
Q ss_pred HHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHh
Q 047480 333 FGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI-------FLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
++++.+.. +-+...+..+...+...|+++.+.+++. .+.+....+.. ..+..++....+..+.+...++++
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~-~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILP-SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998864 3356677788899999999999999999 66666543322 123344544555666778888888
Q ss_pred cCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh
Q 047480 406 KIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484 (719)
Q Consensus 406 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 484 (719)
.++.. +.++.....+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 88766 568888999999999999999999999999873 555522 13334445699999999999988543 3446
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
..+.++..++.+.|++++|.+.|+.+ ...|+...+..+...+...|+.++|...+++.+.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67889999999999999999999987 677999998999999999999999999999998754
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.7e-11 Score=124.99 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=193.1
Q ss_pred ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCChH-HHH
Q 047480 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV-F-GRNIFLTTAVIDMYAKCGSID-TAL 401 (719)
Q Consensus 325 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~li~~y~k~g~~~-~A~ 401 (719)
+..+|+..|.....+ +.-+......+..+|..++++++++.+|+ .+.+.. . ..+..+|++.+--+-+.-.+. -|.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~-~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFS-LVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 568999999995444 34455777788999999999999999999 555432 2 245667777664333222111 122
Q ss_pred HHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
.+.+.. +..+.+|-++...|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+
T Consensus 412 ~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 412 DLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 232222 35788999999999999999999999999998 567 55788888888888999999999999886
Q ss_pred ccChhHHHHH---HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 047480 481 KPQMEHYGCM---VDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 481 ~p~~~~~~~l---i~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
..|..+|+++ .-.|.+.++++.|+-.|+++ .+.|. .+....+...+-+.|+.|+|+.++++++-++|.++-.-+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 4566677654 56789999999999999988 67774 4555555666888999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 047480 556 LSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 556 l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.+.++...+++++|...++++++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999999863
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=7.4e-13 Score=132.94 Aligned_cols=251 Identities=13% Similarity=0.175 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHhhc-CC----CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 286 ISGYTREGKIERARQLFDQM-DQ----RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
...+.+.|++++|.++++.. .. .|...|..+.......++.++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444445555555555321 11 12333333333444445555555555555443211 22233333333 34455
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
+++|.++......+ .++...+...+..|.+.++++++.++++.+... +.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555544422211 123344445555566666666666666553321 245566777777777777777777777
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 047480 438 REMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA- 514 (719)
Q Consensus 438 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p- 514 (719)
++..+. .|+ ......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|+..+++. ...|
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 777764 554 4456667777777777777777777766432 445566677777777777777777777776 2234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
|+.+...+..++...|+.++|..+.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 555666666777777777777777776654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.1e-09 Score=106.15 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=66.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 396 (719)
.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++ .+.+.+ +.|-..|-.|.++|.-.+.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR-rAvdi~-p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR-RAVDIN-PRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH-HHHhcC-chhHHHHhhhhHHHHHhcc
Confidence 333444444444444444444332 1112233333334444444444444444 333222 2333444444444444444
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (719)
..-|+-.|++...- |.|...|.+|..+|.+.++.++|+..|.+....| ..+...+..|...+-+.++.++|.++|+.-
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444443333 3344444444444444444555555444444433 223344444444444444444444444443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.2e-09 Score=115.49 Aligned_cols=252 Identities=11% Similarity=0.023 Sum_probs=121.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CCh--hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 286 ISGYTREGKIERARQLFDQMDQ--RDL--VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
..++.+.|+.+.|.+.+.+..+ |+. ...-.....+.+.|++++|.+.++++.+.. +-+...+..+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 3444455555555555555322 221 112222444455555555555555555542 11333444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCChhH-------HHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFL-------TTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETS 433 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~-------~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 433 (719)
+.+.+.+. ...+.+..+.... +..+++.-......+...+.+...+.. +.++..+..+...+...|+.++|
T Consensus 204 ~~a~~~l~-~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIID-NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 55555555 3443332211111 111111111122233444444444432 34666777777777777777778
Q ss_pred HHHHHHHHHcCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHcCCccC-h--hHHHHHHHHHHhcCCHHHHHHHH
Q 047480 434 IAVFREMELMGLKPDGVTF---VTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-M--EHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~--~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+++++..+. .||.... ..........++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777777764 3444321 11111122335555666666555532 222 2 33445556666666666666666
Q ss_pred Hh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 508 QS---MPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 508 ~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
+. ....|+...+..+...+.+.|+.++|.+++++.+
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 62 2344555555555555555555555555555543
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=7.2e-09 Score=102.50 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=231.1
Q ss_pred HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCCHHH
Q 047480 220 CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTA--AWSSMISGYTREGKIER 297 (719)
Q Consensus 220 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~ 297 (719)
..+.|..+.|...+...+.. .|-.-..|..|.... .+.+.+..+.. +.+.|.. .---+..+|-...+.++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~li---t~~e~~~~l~~--~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELI---TDIEILSILVV--GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhh---chHHHHHHHHh--cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 34556666777666666553 333333333333222 22222222111 2222211 11123344444445555
Q ss_pred HHHHHhhcCC---CC-hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-C-CChhHHHHHHHHHHccCChHH-HHHHHHH
Q 047480 298 ARQLFDQMDQ---RD-LVSWTAMISGYSQVGGFSQALELFGKMESLGI-H-PDEVTMVAVLRACVGLGALDF-GKRLHQQ 370 (719)
Q Consensus 298 A~~~f~~m~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~~-a~~~~~~ 370 (719)
+..-.+.... ++ ...-+....+.-.+.++++|+.+|++..+... . -|..+|+.++-+-.....+.- |..++
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-- 323 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-- 323 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH--
Confidence 5544444332 12 22222233344566789999999999987631 1 156788877765443222221 22221
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 371 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
.+. .-.+.+...+.+-|+-.++-++|...|++..+. +.....|+.|..-|....+...|++-+++.++-. +.|-
T Consensus 324 ~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~Dy 398 (559)
T KOG1155|consen 324 NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDY 398 (559)
T ss_pred Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhH
Confidence 122 233455667788899999999999999998775 5667789999999999999999999999999842 4466
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (719)
..|-.|.++|.-.+.+.-|+-+|++..... +-|...|.+|.+.|.+.++.++|++-|++.- .+.+...+..|...+.
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 799999999999999999999999998743 4458899999999999999999999999872 2335588899999999
Q ss_pred hcCChhHHHHHHHHHhc-------cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 528 LHRNAKIGEIAGQKLLD-------LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
+.++.++|...+++-++ .+|....+...|+.-+.+.++|++|..+.....
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999999999999887 345445566678899999999999998766654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=5.5e-10 Score=118.16 Aligned_cols=284 Identities=14% Similarity=0.067 Sum_probs=186.5
Q ss_pred cCCCcchHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHH
Q 047480 187 QVKEPCPALWLFRKMQDSCIQPDAFT-FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265 (719)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 265 (719)
..|+++.|.+.+.+..+. .|+... +.....+..+.|+.+.+.+.+..+.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------------------------- 147 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------------------------- 147 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------
Confidence 467777777777665543 343322 223334455556666666666665544
Q ss_pred HHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcC
Q 047480 266 AERVFSTMGMSKST--AAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLG 340 (719)
Q Consensus 266 a~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 340 (719)
.|+. .+.-.....+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.+
T Consensus 148 ----------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 148 ----------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred ----------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2333 3444457777778888888888887765 355567777888888888888888888888776
Q ss_pred CCCChhHHHHHHHHH---HccCChHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChh
Q 047480 341 IHPDEVTMVAVLRAC---VGLGALDFGKRLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~ 415 (719)
+.+.......-..+. ...+..+.+.+.+........ .+.+...+..+...+...|+.+.|.+++++..+..||..
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 433222111111111 111222222233332232221 124788888999999999999999999999877533333
Q ss_pred c---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHH
Q 047480 416 L---FNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489 (719)
Q Consensus 416 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 489 (719)
. +..........++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|.++|+........|+...+..
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 1 122222334467888899999888874 56655 455788889999999999999996554446799888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 047480 490 MVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~ 510 (719)
+...+.+.|+.++|.+++++.
T Consensus 376 La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999874
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=4.7e-09 Score=111.42 Aligned_cols=473 Identities=11% Similarity=0.061 Sum_probs=274.3
Q ss_pred HHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC
Q 047480 94 VLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR 173 (719)
Q Consensus 94 ~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 173 (719)
.++-.+...|+. ||..||..++.-|+..|+.+.|- +|..|.....+....+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 355567778887 88888888888888888888777 8888777777777778888888777777776665 56
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhccC-C------cHHHHHHHHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRK-MQ-------DSCIQPDAFTFVAMFSACTELN-D------PRIGKQFHAVVYK 238 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~pd~~t~~~ll~a~~~~~-~------~~~a~~i~~~~~~ 238 (719)
...+|..|..+|.+.|+... ++..++ |. ..|+.--..-+-..+.+|...- + ...-+.+.+...+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887644 222222 21 1232222222222222221110 0 0011122233333
Q ss_pred hhCCCCCchHHHHHH--HH-HHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----h
Q 047480 239 NLGCVGSNMLLKTAV--IN-MYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL----V 311 (719)
Q Consensus 239 ~~~~~~~~~~~~~~l--i~-~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~----~ 311 (719)
.....|......... ++ .-.....+++.....+...-.+++.++.++++.-...|+++.|..+...|.++.. .
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 311122111111111 11 1112223455555555542279999999999999999999999999999987532 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHH----------HHHH-------
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ----------YIEN------- 374 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~----------~~~~------- 374 (719)
-+-.++-+ .++...+..+++-|.+.|+.|+..|+...+-.+...|....+.+.... .+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 23344433 788888899999999999999999999988888886665543322110 0000
Q ss_pred ------------------cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CCChhcHHHHHHHHHhCC---
Q 047480 375 ------------------VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-----LKTVSLFNSIISGLAQHG--- 428 (719)
Q Consensus 375 ------------------~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g--- 428 (719)
.|+.....+|.-.+. ....|.-+..+++-..+..- +.++..+..++.-|.+.-
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 011111111111111 11134444444444443321 123334444333332211
Q ss_pred -------------------ChhHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHHhc
Q 047480 429 -------------------LGETSIAVFREMELMGLKPDGV----------------------------TFVTVLCACSH 461 (719)
Q Consensus 429 -------------------~~~~A~~~~~~m~~~g~~p~~~----------------------------t~~~ll~a~~~ 461 (719)
...+..++... ..||.. .-+.++..|..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 01111111111 122221 12334444444
Q ss_pred cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHH
Q 047480 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-----YDANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
.-+..+++..-+.....-+ ...|..|++.+....++++|..+.++.. ..-|..-+..+.+...+++....+.
T Consensus 472 e~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 4444444433333332111 1568899999999999999999999873 2235566778888888899888888
Q ss_pred HHHHHHhc---cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccE
Q 047480 537 IAGQKLLD---LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSY 589 (719)
Q Consensus 537 ~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 589 (719)
.+.+++.+ ..|.-......+.+..+..|+.+.-.++++-+...|+.. .|--|
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 88887765 344445567778888889999999999999999988865 34444
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=4e-08 Score=101.02 Aligned_cols=509 Identities=14% Similarity=0.157 Sum_probs=300.6
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCC-----CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDN-----PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFP 113 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~ 113 (719)
+.+|-..+....+ . |++..-++.|+.... .....|.-.+.-..+.+-++-++.+|++.++.. |.. -.
T Consensus 102 pRIwl~Ylq~l~~--Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~~--~e 173 (835)
T KOG2047|consen 102 PRIWLDYLQFLIK--Q-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PEA--RE 173 (835)
T ss_pred CHHHHHHHHHHHh--c-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HHH--HH
Confidence 5677777888888 7 999999999987532 345579999999999999999999999998865 333 45
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCC--C--hhhHHH
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFG------LEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLAR--D--LVSYNT 180 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~--~--~~~~~~ 180 (719)
--+.-++..+++++|.+.+..++... -+.+...|..+.+..++.-+. -....++..+..+ | ...|++
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 55666778899999999888876432 145666777777777665332 2344556665553 3 357999
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH----------------------HHHHHHHHHH
Q 047480 181 LINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI----------------------GKQFHAVVYK 238 (719)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~----------------------a~~i~~~~~~ 238 (719)
|..-|.+.|.++.|.++|++-... ..+..-|..+.++|++...... ...-++.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999987764 2344455666666554322111 1111222211
Q ss_pred hhC---------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCC------chHHHHHHHHHHHhcCCHHHHHHH
Q 047480 239 NLG---------CVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSK------STAAWSSMISGYTREGKIERARQL 301 (719)
Q Consensus 239 ~~~---------~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~------~~~~~~~li~~y~~~g~~~~A~~~ 301 (719)
..+ ..+.++..|..-+.. ..|+..+....+.+. .+.| -...|..+.+.|-..|+++.|+.+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 100 011111111111111 122233333334333 2222 124677888888888888888888
Q ss_pred HhhcCCCChh-------hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 047480 302 FDQMDQRDLV-------SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIEN 374 (719)
Q Consensus 302 f~~m~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 374 (719)
|++..+-+-. +|-.-...=.++.+++.|+++.++... .|.... + .+...+..-++ .+|
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~-rlh------ 474 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA-RLH------ 474 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH-HHH------
Confidence 8887653222 344444455566777777777666543 232211 1 11111111111 111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HH
Q 047480 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TF 452 (719)
Q Consensus 375 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 452 (719)
.+..+|+-.++.--..|-++....+++++.+. ..++..--....-+-.+.-++++.++|++-+..--.|+.. .|
T Consensus 475 ----rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 475 ----RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred ----HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 23455666677777778888888888877663 1121111111222344566777887777655543345543 44
Q ss_pred HHHHHHHh---ccCcHHHHHHHHHHHHHcCCccChh--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHH
Q 047480 453 VTVLCACS---HGGLVEEGKQFFESMLNYGIKPQME--HYGCMVDLLARDGRLDEAYGLIQSMP--YDAN--SVIWRALL 523 (719)
Q Consensus 453 ~~ll~a~~---~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~--~~~~~~ll 523 (719)
+..|.-+. ..-.++.|+.+|++.++ |.+|.-. .|-.....=-+-|....|++++++.. .++. ...|+..|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444332 23467888888888887 5555421 22222233335577777888888873 3332 24677777
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGA--HYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.-....=-+..-..+++++++.=|++-. .....+++=.+.|..+.|+.++.--.+.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 5543333344556778888887776432 3445566777888888888887765543
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-08 Score=103.42 Aligned_cols=264 Identities=13% Similarity=-0.002 Sum_probs=202.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
++.....-..-+...+++.+.++++....+.. ++....+..-|..+...|+..+-..+-.+++.. .+....+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 33444445566777899999999999988763 455555555566677777665554444323333 356677888999
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
--|.-.|+.++|++.|.+.... +.=...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 8899999999999999987663 233457999999999999999999998877663 12222334444456888999999
Q ss_pred HHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHHH
Q 047480 468 GKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP--------YDA-NSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
|.++|.+... +-|+ +..++-+.-+....+.+.+|..+|+..- .++ -..+|+.|..+|++.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998874 4444 6677777777778889999999987751 112 34578889999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.+++++.+.|.++.+|..++-+|...|+++.|.+.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=3.8e-10 Score=110.02 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
....+..+...|.+.|++++|.+.|++.... +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3556677888999999999999999887654 4567788889999999999999999999998753 3345677778888
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGI-KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
+...|++++|.+.++.+.+... ......+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999985322 223556777889999999999999999887 3334 456788888889999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999888764
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.8e-11 Score=86.00 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=46.4
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (719)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=2.5e-08 Score=97.42 Aligned_cols=294 Identities=14% Similarity=0.096 Sum_probs=165.4
Q ss_pred HHHHHHHc--CCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 047480 180 TLINGYAQ--VKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257 (719)
Q Consensus 180 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y 257 (719)
.+..+..+ .|++..|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+....+.+.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~------------------ 147 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAEL------------------ 147 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhcc------------------
Confidence 34444443 678888888888776665444 234555566677778888888887777765
Q ss_pred HhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047480 258 AKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMD---QRDLVSWTAMISGYSQVGGFSQALELFG 334 (719)
Q Consensus 258 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (719)
.-.++..+.-+........|+.+.|..-.++.. .++..........|.+.|++.+...+..
T Consensus 148 ----------------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 148 ----------------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred ----------------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 335556666677777777777777777666554 3566677778888888888888888888
Q ss_pred HhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCC
Q 047480 335 KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKT 413 (719)
Q Consensus 335 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~ 413 (719)
+|.+.|+--|... .++ ...+++.+++-....+..+.-...++..+.. ..+
T Consensus 212 ~L~ka~~l~~~e~-----------------~~l------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 212 KLRKAGLLSDEEA-----------------ARL------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred HHHHccCCChHHH-----------------HHH------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 8888775444321 000 0112233333333333333333344444443 233
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~ 492 (719)
+..-.+++.-+.+.|+.++|.++.++..+.+..|+-. .+-.+.+.++.+.-.+..+.-. .++-. +..+.+|..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~ 336 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGR 336 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHH
Confidence 4444555555566666666666666666555555411 1223445555554444444444 22222 244445555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
.|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++|....++.+
T Consensus 337 L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 337 LALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 555555555555555543 444555555555555555555555555554444
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.1e-07 Score=96.72 Aligned_cols=278 Identities=14% Similarity=0.080 Sum_probs=173.0
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 047480 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMI 317 (719)
Q Consensus 243 ~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 317 (719)
...+..+.....+-+...+++++..++.+.. ..++....+..-|..+...|+..+-..+=.++.+ ...++|-++.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3444444455555555666666666555555 3344444555555566666654443333333332 2455676666
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVF-GRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g 395 (719)
.-|...|..++|.+.|.+...- .|. ...|.....+++..+.-++|...+. .+.+.-. ..-+..| +.--|.+.+
T Consensus 320 ~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~-tAarl~~G~hlP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYF-TAARLMPGCHLPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHH-HHHHhccCCcchHHH--HHHHHHHhc
Confidence 6666667777777777665432 221 2345566666666666666666665 3333210 1112222 223467778
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc--CC---CC-CHHHHHHHHHHHhccCcHHHH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM--GL---KP-DGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~t~~~ll~a~~~~g~~~~a 468 (719)
+++.|.+.|.+.... |.|+...+-+.-..-..+.+.+|...|+..+.. .+ ++ -..+++.|..+|.+.+..++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 888888888876665 567778888877777788888888888876631 01 11 234677888888888888888
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAAC 526 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~ 526 (719)
+..|++.+... +.+..++.++.-.|...|+++.|.+.|.+. ..+||..+-..+++.+
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 88888887532 456778888888888888888888888776 5677777767666543
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.8e-11 Score=85.99 Aligned_cols=50 Identities=36% Similarity=0.652 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 047480 173 RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTE 222 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 222 (719)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999864
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.1e-08 Score=94.13 Aligned_cols=271 Identities=11% Similarity=0.017 Sum_probs=195.5
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH---HHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAM---ISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 350 (719)
-++.|+....++.+.|...|+.++|...|++..--|..+...| .-.+.+.|++++...+...+.... .-....|..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 5677888889999999999999999999998776554443332 233567888888888888776542 112222322
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC
Q 047480 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 351 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 429 (719)
-+...-...+.+.|..+-+ ...+.. +.++..+-.-..++...|+.++|.-.|+..... |-+..+|.-|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~e-K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVE-KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHH-HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 3333445567777776666 333322 223333333345667789999999999887655 4678899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVL-CACSH-GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGL 506 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~ 506 (719)
..+|.-+-+..... +..+..+...+. ..|.- ...-++|..++++..+ +.|+ ....+.+...+.+.|+.++++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99998887766553 233444554442 23332 2335789999888775 4677 67788889999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 507 IQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 507 ~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+++. ...||....+.|....+-.+.+++|...|..++.++|++.
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 9886 5678999999999999999999999999999999999874
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=2.1e-07 Score=98.07 Aligned_cols=427 Identities=12% Similarity=0.036 Sum_probs=252.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCh-hhHH
Q 047480 139 GLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA-FTFV 214 (719)
Q Consensus 139 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~ 214 (719)
.+..|..+|..|.-....+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+. ..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567889999999999999999999999998543 34567999999999999999999998876544323443 3344
Q ss_pred HHHHHHh-ccCCcHHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHHHhcCC-----------hHHHHHHHHHc-CC-CCc
Q 047480 215 AMFSACT-ELNDPRIGKQFHAVVYKNLGCVGSN--MLLKTAVINMYAKCGL-----------MNMAERVFSTM-GM-SKS 278 (719)
Q Consensus 215 ~ll~a~~-~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~-----------~~~a~~~~~~~-~~-~~~ 278 (719)
.+-+.|. +.+..+++..+-..++...++.... ...+-.+.-+|...-. -.++...+++. .+ +.|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 4466667766666666532222221 2223333333332211 22344455554 12 222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 354 (719)
+.+.-.+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+.....- .-|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 23333333446666777777776665443 466678777777777888888888877665431 1111111111222
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCCChh-cHHHHHHHHHhCCCh
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP---KNLKTVS-LFNSIISGLAQHGLG 430 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~-~~~~li~~~~~~g~~ 430 (719)
-...++.+++.........-..-.+. ....|+-....+.+..+. ..+.+.. ++..+. +..+ -+.
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~ 624 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQL 624 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhh
Confidence 22234444444333311000000000 001111222333333322 1122222 222222 2222 111
Q ss_pred hHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH
Q 047480 431 ETSIAVFREMELMGLKPDGV--------TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 502 (719)
..+..-.. |...-+.|+.. .|......+...+..++|...+.++.+. .......|......+...|+++|
T Consensus 625 ~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHH
Confidence 11100000 22222233221 2344555677888899998887777642 12335667777788899999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 503 AYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEI--AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 503 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
|.+.|... ...|+ +.+..++...+.+.|+...|.. +...+++++|.++.+|..|+.++.+.|+.++|.+.|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99998876 56775 4578888888999998888888 99999999999999999999999999999999999998876
Q ss_pred CC
Q 047480 579 SG 580 (719)
Q Consensus 579 ~~ 580 (719)
-.
T Consensus 783 Le 784 (799)
T KOG4162|consen 783 LE 784 (799)
T ss_pred hc
Confidence 43
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.5e-08 Score=94.25 Aligned_cols=439 Identities=14% Similarity=0.079 Sum_probs=247.1
Q ss_pred CChHHHHHHhccCCC------CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHH
Q 047480 56 NGLFRSRILFSQIDN------PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGC 129 (719)
Q Consensus 56 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~ 129 (719)
.+++.|+.+++.-.. .++..| +..++-+.|++++|+..|..+.+..- |+...+..+..+..-.|.+.+|+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHH
Confidence 566666666543321 122233 44566678888899888888776542 66666666666666677777777
Q ss_pred HHHHHHHHhCCCCChhHHHHHH-HHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047480 130 QIHCHIIKFGLEFDLFIRNALI-HFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 130 ~~~~~~~~~g~~~~~~~~~~Li-~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
++-... |+....+.|+ +.-.+.++-++-..+-+++. ....---+|.+.....-++.+|++++.+.+.. .|
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 765442 4444444444 44444455444433333332 22222334444444455678899999888764 35
Q ss_pred ChhhHHHHHHH-HhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHH
Q 047480 209 DAFTFVAMFSA-CTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSM 285 (719)
Q Consensus 209 d~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~l 285 (719)
+-...+.-+.. +.+..-++.+..++..-.+. +|.+....|..+....+.-....|..-.+++ .....- ..
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~----~f 255 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY----PF 255 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc----hh
Confidence 55555554444 45667777777777776665 5666666666655555544444444333333 111110 01
Q ss_pred HHHHHhc-----CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 286 ISGYTRE-----GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 286 i~~y~~~-----g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
+.-.++. ..-+.|.+++-.+...=...--.++--|.++++..+|..+.+++.. ..|-......+..+- .|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa--lG- 330 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA--LG- 330 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH--hh-
Confidence 1111221 1224444444333221111222344456777777777777666532 123333322222221 11
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
.-......+.-|...|+-+.+. ..++..-.+|.+.+.-..++++.+-.+
T Consensus 331 ----------------------------Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 331 ----------------------------QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred ----------------------------hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 1111111233344444333322 234445566777777777788888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 047480 438 REMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSV 517 (719)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~ 517 (719)
......- .-|...-..+..|.+..|.+.+|.++|-.+....++-+..-...|...|.++++.+-|++++-++....+..
T Consensus 383 nSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~f 461 (557)
T KOG3785|consen 383 NSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERF 461 (557)
T ss_pred HHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHH
Confidence 7776653 333343345677888899999999999776643333333334456688999999999999998886555666
Q ss_pred HHHHHHHH-HHhcCChhHHHHHHHHHhccCCC
Q 047480 518 IWRALLAA-CRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 518 ~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+.-.+|.- |.+.+.+--|-++|..+-.++|.
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 66666654 88888888888888888888885
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=3.1e-08 Score=96.75 Aligned_cols=302 Identities=13% Similarity=0.097 Sum_probs=207.3
Q ss_pred HHHHHHHHc--CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 047480 77 NTLMRGYSR--SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFY 154 (719)
Q Consensus 77 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 154 (719)
..+..++.+ .|+|.+|.++..+-.+.+-. ....|.....+.-+.|+.+.+-.+..++.+..-.++..+.-+.....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 345555544 68999999999987777632 23345566666778899999999999998874467777888888888
Q ss_pred HhcCChhHHHHHHcc---CCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 047480 155 SIFGYINNAHKVFEG---SLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQ 231 (719)
Q Consensus 155 ~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (719)
...|+.+.|+.-.++ |..++..........|.+.|++.+...++..|.+.|+--|... .+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~ 226 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR 226 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH
Confidence 899999999887765 5567888899999999999999999999999998886544321 11
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 047480 232 FHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---R 308 (719)
Q Consensus 232 i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~ 308 (719)
+- ..+|+.+++-....+..+.-...++..+. .
T Consensus 227 le---------------------------------------------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~ 261 (400)
T COG3071 227 LE---------------------------------------------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN 261 (400)
T ss_pred HH---------------------------------------------HHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence 00 11222233322223333333344444442 3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ..+-.+.+.++.+.-.+..++.....+..| ..+.+|.
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG 335 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLG 335 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHH
Confidence 3444455666677777888888887777777665552 222345566666666666665666665444 6778888
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 448 (719)
..|.+.+.+.+|...|+...+..++...|+-+..+|.+.|+..+|.+++++....-..|+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 888888888888888887666567788888888888888888888888777664433443
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2e-08 Score=95.07 Aligned_cols=251 Identities=11% Similarity=0.098 Sum_probs=167.9
Q ss_pred cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN--IFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A 400 (719)
+++.++|.++|-+|.+.. +-+..+-.++-+.+-+.|..+.|..+|...+...++..+ ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887642 223344456667777788888888888844444333222 22334566778888888888
Q ss_pred HHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHH
Q 047480 401 LSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV----TFVTVLCACSHGGLVEEGKQFFESM 475 (719)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m 475 (719)
+.+|..+.+. ..-.....-|+..|-+..++++|+++-+++.+.+-.+..+ .|.-+........+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887763 2233456677888888888888888888888776565553 4556666666777888888888888
Q ss_pred HHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 476 LNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS--VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 476 ~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.+.. |+ +..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|.+.|+.+++...+.++.+..++. .
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~ 283 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-D 283 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-c
Confidence 7533 33 334445667888888888888888877 334443 356777788888888888888888888877764 3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.-..+...-....-.++|..+..+-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44445544444444455555444433
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=4.8e-09 Score=115.34 Aligned_cols=246 Identities=12% Similarity=0.022 Sum_probs=176.8
Q ss_pred ChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHH---------ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 325 GFSQALELFGKMESLGIHPDE-VTMVAVLRACV---------GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 325 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
..++|+++|++..+. .|+. ..+..+..++. ..++.++|...++ ...+.. +.+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~-~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI-KATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHc
Confidence 357888888888865 4543 34444433332 2244788888888 455443 45677788888889999
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
|++++|...|++..+. |.+...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999997765 556778999999999999999999999999985 56543 3333444566789999999999
Q ss_pred HHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 473 ESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 473 ~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
+++.+.. .|+ ...+..+..+|...|++++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-..
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 9987543 343 556777889999999999999999987 4455544 4455555566666 47777777777643333
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 550 GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+.....+...|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33334477788888888888877 7777654
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=4.1e-08 Score=102.94 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHH----cCC-CCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCC--------
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIEN----VVF-GRNI-FLTTAVIDMYAKCGSIDTALSVFYKIPKN-------- 410 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------- 410 (719)
..|...+...|...|+++.|.+++...+.. .|. .+.+ ...+.+..+|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666778888888888888888743332 121 1121 12234667888899999998888775432
Q ss_pred -CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHH-c--C
Q 047480 411 -LKTVSLFNSIISGLAQHGLGETSIAVFREMEL-----MGLKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLN-Y--G 479 (719)
Q Consensus 411 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~-~--g 479 (719)
+.-..+++.|...|...|++++|..++++..+ .|..+..+ -++.+...|...+.+++|..+++...+ + -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12234688888899999999999888877654 22222222 566677779999999999999988762 1 1
Q ss_pred CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc-
Q 047480 480 IKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSMP-------Y--DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLD- 544 (719)
Q Consensus 480 ~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~-------~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 544 (719)
+.++ ..+++.|...|...|+++||+++++++- . .+ .....+.|..+|.+.++.++|.++|++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4689999999999999999999998861 1 22 245677788889999999999999988765
Q ss_pred ---cCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 545 ---LEPDH---GAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 545 ---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
..|+. ..+|..|+.+|.+.|++|+|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 4578899999999999999999988876
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=2.6e-08 Score=94.21 Aligned_cols=280 Identities=13% Similarity=0.130 Sum_probs=175.9
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCC--ChhHHHHHHHHHHhcCChhH
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG-LEF--DLFIRNALIHFYSIFGYINN 162 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~~~g~~~~ 162 (719)
+.+.++|.++|-+|.+.. |-+..+-.++.+.+.+.|..+.|..+|..+.++. ... -......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467899999999999865 1344466677888889999999999999888652 111 12345567788899999999
Q ss_pred HHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhh----HHHHHHHHhccCCcHHHHHHHHH
Q 047480 163 AHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFT----FVAMFSACTELNDPRIGKQFHAV 235 (719)
Q Consensus 163 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~ 235 (719)
|+.+|..+... -......|+..|-+..+|++|+++-+++...+-++..+- |.-+........+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999987663 345677789999999999999999999987664444332 22233333444556666666666
Q ss_pred HHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----
Q 047480 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLV---- 311 (719)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---- 311 (719)
+.+. .+..+.+--.+.+.+...|+++.|.+.++.+.+.|..
T Consensus 206 Alqa-----------------------------------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 206 ALQA-----------------------------------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred HHhh-----------------------------------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 5554 2333444555566666677777777777666654432
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 391 (719)
+...+..+|.+.|+.++.+..+.++.+.. ++...-..+........-.+.|.....+.+.+ .|+...+..||+.-
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~ 325 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhh
Confidence 34556667777777777777777666542 22222223333333334445555554433333 46666667777655
Q ss_pred Hhc---CChHHHHHHHhcC
Q 047480 392 AKC---GSIDTALSVFYKI 407 (719)
Q Consensus 392 ~k~---g~~~~A~~~~~~~ 407 (719)
... |...+....++.|
T Consensus 326 l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 326 LADAEEGRAKESLDLLRDM 344 (389)
T ss_pred hccccccchhhhHHHHHHH
Confidence 432 2333444444444
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.3e-07 Score=92.99 Aligned_cols=438 Identities=13% Similarity=0.109 Sum_probs=247.4
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--
Q 047480 80 MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNA--LIHFYS-- 155 (719)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~-- 155 (719)
++-+..+|++++|.....++...+ |-|...+..-+-+..+.+.++.|..+.. +.+. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHH
Confidence 455667788888988888888776 2445566666667778888888874432 2221 111222 234444
Q ss_pred hcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH-HHHHHHHhccCCcHHHHHHHH
Q 047480 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF-VAMFSACTELNDPRIGKQFHA 234 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~ 234 (719)
+.+..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++..--..-. ..++.+-. ..-.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQV 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhH
Confidence 5688899998888555555556666667788889999999999988776532211111 11111110 0000
Q ss_pred HHHHhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc--------
Q 047480 235 VVYKNLGCVGS-NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQM-------- 305 (719)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m-------- 305 (719)
...+..+..+. +-..+....-. +...|++.+|+++++..
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~--------------------------------~i~~gky~qA~elL~kA~~~~~e~l 209 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACI--------------------------------LIENGKYNQAIELLEKALRICREKL 209 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHH--------------------------------HHhcccHHHHHHHHHHHHHHHHHhh
Confidence 01111001111 11112222233 34445555555555444
Q ss_pred CCCC-----h-----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHH---HHHHHccCChHH--HHHHHHH
Q 047480 306 DQRD-----L-----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAV---LRACVGLGALDF--GKRLHQQ 370 (719)
Q Consensus 306 ~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~--a~~~~~~ 370 (719)
.+.| . ..--.|.-.+...|+.++|..++...++.. .+|....... |.+...-.++-. ....++.
T Consensus 210 ~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~ 288 (652)
T KOG2376|consen 210 EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKS 288 (652)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHH
Confidence 1100 0 011234445667788888888888887764 4444322222 122222111111 1111110
Q ss_pred -----------HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHH-HhCCChhHHHHHHH
Q 047480 371 -----------YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGL-AQHGLGETSIAVFR 438 (719)
Q Consensus 371 -----------~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~ 438 (719)
.+.+. -......-+.++.+|. +..+.+.++-..++...|....=+.+..++ .+...+.+|.+++.
T Consensus 289 ~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 289 QVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00000 0112233356666664 455677777777766433333333333333 22335778888888
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH--------HHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 439 EMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFE--------SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 439 ~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
..-+. .|.. +.....+.-....|+++.|.+++. .+.+.+.. +.+...++.+|.+.+.-+-|.+++.
T Consensus 366 ~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 366 QFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHH
Confidence 77664 4444 345555666778999999999998 55554433 4566678889988887766666665
Q ss_pred hC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 509 SM--------PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 509 ~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
+. +.++. ..+|.-+..--.++|+.++|...++++++.+|++......+..+|++. +.+.|..+-+.
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 54 22222 234444444456779999999999999999999999999999999876 45666655443
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.15 E-value=3.4e-06 Score=87.25 Aligned_cols=507 Identities=12% Similarity=0.129 Sum_probs=300.1
Q ss_pred ChHHHHHHHHHHHHhC-CCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHH
Q 047480 20 SLKQALQIHGQIVHSG-LNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYT 97 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 97 (719)
++..-+..++..+..- +.. ..+|.-.+..... . |-++-+.+++++-.+-+...-+..|..+++.+++++|-+.+.
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~--~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVES--H-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh--C-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455566677666553 233 6788888887777 6 888999999998777666668889999999999999999998
Q ss_pred HhHhCCC-----CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcCChhHHHHHHc
Q 047480 98 SMLSKGI-----VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL--EFD--LFIRNALIHFYSIFGYINNAHKVFE 168 (719)
Q Consensus 98 ~m~~~g~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g~~~~A~~~f~ 168 (719)
....... .+.+...|.-+-....+..+.-...++ +.+++.|+ -+| ...|++|.+-|.+.|.++.|+.+|+
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8764221 113334455554444444433332222 33344443 234 3689999999999999999999998
Q ss_pred cCCCC--ChhhHHHHHHHHHc----------------CCCc------chHHHHHHHHHHCC-C----------CCChhhH
Q 047480 169 GSLAR--DLVSYNTLINGYAQ----------------VKEP------CPALWLFRKMQDSC-I----------QPDAFTF 213 (719)
Q Consensus 169 ~~~~~--~~~~~~~li~~~~~----------------~g~~------~~A~~~~~~m~~~g-~----------~pd~~t~ 213 (719)
+.... .+.-++.+-++|++ .|+. +-.+.-|+.+...+ + .-+..+|
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 74432 22223333333322 2222 22233344433321 0 1112222
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-----CCchHHHHH
Q 047480 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVG---SNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-----SKSTAAWSS 284 (719)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-----~~~~~~~~~ 284 (719)
..-.. ...|+..+-...+..+++...... .--..|..+.+.|-..|+.+.|..+|++. .+ ..=..+|..
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 22211 123455666677777777621111 12356889999999999999999999998 11 112457777
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---------------------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC
Q 047480 285 MISGYTREGKIERARQLFDQMDQ---------------------RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP 343 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~---------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 343 (719)
-..+=.+..+++.|.++.+.... ++...|.-.+..--..|-++....+|+++.+..+..
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 77888888899999998887542 123345555555556677777777888887654332
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---cCChHHHHHHHhcCCCCCC-Chh-c-H
Q 047480 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK---CGSIDTALSVFYKIPKNLK-TVS-L-F 417 (719)
Q Consensus 344 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k---~g~~~~A~~~~~~~~~~~~-~~~-~-~ 417 (719)
..... ....-+....-++++.+++++-+.-...+.-..+|+.-+.-+.+ .-.++.|+.+|++..+..| ... + |
T Consensus 511 Pqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 511 PQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY 589 (835)
T ss_pred HHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22211 11112233344566666665222222222223455655544443 2367888888888776623 211 1 1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChh---HHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME---HYGCMVD 492 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~ 492 (719)
-.....=-..|-...|+.++++.... ++|.. ..|+..|.--...=-+...+.+|++.++. -|+.. ..--..+
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 11111223467778888888886543 55544 36777766444443455667777777752 34432 2333456
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChhHHH
Q 047480 493 LLARDGRLDEAYGLIQSMP--YDA--NSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~~--~~p--~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
+=.+.|..+.|..++.-.. .+| +...|.+.=.--.+|||-+.-.
T Consensus 667 lEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYK 714 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 6678899999998887652 233 5667888777778899944333
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.3e-08 Score=97.08 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN-NFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIH 152 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~ 152 (719)
.+-...+-+-++|++++|++.|.+.+... || +.-|.....+|...|+++.+.+.-...++.. |+ +-.+..-.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 34556677888888888888888888776 77 6667777777778888888887777666554 33 345566667
Q ss_pred HHHhcCChhHHHH
Q 047480 153 FYSIFGYINNAHK 165 (719)
Q Consensus 153 ~y~~~g~~~~A~~ 165 (719)
++-..|++++|+.
T Consensus 192 A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 192 AHEQLGKFDEALF 204 (606)
T ss_pred HHHhhccHHHHHH
Confidence 7777788877653
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=7.9e-09 Score=103.97 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=153.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 360 ALDFGKRLHQQYIENVVFGRN--IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
..+.+..-+.+.+......++ ...+..+...|.+.|+.++|...|++..+. +.+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555534433333332 355777788899999999999999987765 66788999999999999999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC
Q 047480 437 FREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YD 513 (719)
Q Consensus 437 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~ 513 (719)
|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+++. . ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999997 46764 57888888899999999999999999863 455332222233455678899999999664 2 23
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLL-------DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|+...|. ......|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.++
T Consensus 197 ~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332221 222335555444 2334443 45566778999999999999999999999999987543
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=1.6e-08 Score=98.48 Aligned_cols=192 Identities=13% Similarity=0.163 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 355 (719)
...+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~------- 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL------- 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH-------
Confidence 34444455555555555555555554432 223344445555555555555555555554432 1122233
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 432 (719)
..+...|...|++++|.+.|++.... +.....|..+...+...|++++
T Consensus 103 -----------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 103 -----------------------------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -----------------------------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 33344444444444444444443321 1223344555555666666666
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 433 SIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|...|++..+. .|+ ...+..+...+...|++++|..++++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 154 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 154 AEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666665553 222 334555555566666666666666666543 2233445555556666666666666655543
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=1.5e-07 Score=98.80 Aligned_cols=201 Identities=14% Similarity=0.183 Sum_probs=130.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhc-----C-CCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHH
Q 047480 315 AMISGYSQVGGFSQALELFGKMESL-----G-IHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 387 (719)
.+...|...+++.+|..+|+++..- | ..|. ..++..+..+|.+.|++++|...++
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e------------------ 307 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE------------------ 307 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH------------------
Confidence 4556777788888888888877641 1 1111 1234444445555555555555444
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCChh-cHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKN-LKTVS-LFNSIISGLAQHGLGETSIAVFREMELM---GLKPDG----VTFVTVLCA 458 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a 458 (719)
.|.++++..... .+.+. .++.++..+...+++++|..++++..+. -+.++. -+++.|...
T Consensus 308 -----------~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 308 -----------RALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred -----------HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 122222221111 13333 3566667777888888888888765541 133333 378888888
Q ss_pred HhccCcHHHHHHHHHHHH-Hc---CC--ccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHH
Q 047480 459 CSHGGLVEEGKQFFESML-NY---GI--KPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--------PYDANS-VIWRAL 522 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~-~~---g~--~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~~~l 522 (719)
|.+.|++++|.++|++++ .. +- .+. ...++.|...|.+.+++++|.++|.+. +..|+. .+|..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 999999999999998887 21 11 122 456778888899999999888888775 234544 578999
Q ss_pred HHHHHhcCChhHHHHHHHHHhc
Q 047480 523 LAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~ 544 (719)
...|...|+++.|+++.+++..
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999888763
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=9.6e-09 Score=96.98 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACS 460 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 460 (719)
++--|-..|.+..+...|+.+|.+-.+. |-|+....-+...+-..++.++|.++|++..+. .| |.....++...|.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYF 335 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccc
Confidence 3334444455555555555555554443 334444444555555566666666666666653 33 3335555555666
Q ss_pred ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM---PYDAN--SVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a 535 (719)
-.++++.|..++++++..|+ .+.+.|+.+.-++.-.+++|-++.-|++. ...|+ ..+|-.+.......||+..|
T Consensus 336 Y~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred cCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 66667777777777666664 35566666666666666666666666654 12233 35677777667778999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+.|+-++..+|++..+++.|+-.-.+.|+.++|+.++...++..
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999999999999999999987654
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=7.6e-06 Score=88.60 Aligned_cols=511 Identities=13% Similarity=0.143 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccHHHHH-----HHHHHcCCCchHHHHH
Q 047480 23 QALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFIWNTL-----MRGYSRSDSPQEALVL 95 (719)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~ 95 (719)
.|.++-+.++..+.-..+-+..+.+.+.| . |-+..|.+-|..+.. +.++ .+.+ +-.|.-.-.++++++.
T Consensus 590 ~aPqVADAILgN~mFtHyDra~IAqLCEK--A-GL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~ec 665 (1666)
T KOG0985|consen 590 HAPQVADAILGNDMFTHYDRAEIAQLCEK--A-GLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLEC 665 (1666)
T ss_pred cchHHHHHHHhccccccccHHHHHHHHHh--c-chHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHH
Confidence 34444445554443332337778888888 8 888999988887753 2221 1111 2234444568889999
Q ss_pred HHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhcCChhHHH
Q 047480 96 YTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKF-----------GLEFDLFIRNALIHFYSIFGYINNAH 164 (719)
Q Consensus 96 ~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~ 164 (719)
++.|+..+++ .|..+...+..-|...-..+...++|+..... ++..|+.+.-.-|.+-++.|++.+.+
T Consensus 666 lkaml~~Nir-qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvE 744 (1666)
T KOG0985|consen 666 LKAMLSANIR-QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVE 744 (1666)
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHH
Confidence 9999998887 77776666666665544445555555544321 24567777778899999999999988
Q ss_pred HHHccCCC-------------------------------CChhhH------HHHHHHHHcCCCcchHHHHHHHHHHCCCC
Q 047480 165 KVFEGSLA-------------------------------RDLVSY------NTLINGYAQVKEPCPALWLFRKMQDSCIQ 207 (719)
Q Consensus 165 ~~f~~~~~-------------------------------~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 207 (719)
++-++-.- +|.+.| -..|..|++.=++...-.+...++.. .
T Consensus 745 Ricresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--d 822 (1666)
T KOG0985|consen 745 RICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--D 822 (1666)
T ss_pred HHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--C
Confidence 87754220 122221 12355565554444444444333322 2
Q ss_pred CChhhHHHHH-------------HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHH---------
Q 047480 208 PDAFTFVAMF-------------SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM--------- 265 (719)
Q Consensus 208 pd~~t~~~ll-------------~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~--------- 265 (719)
-+......+| .-+-+.+++..-...++..+.. -..|..++|+|...|...++-.+
T Consensus 823 C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~e---G~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 823 CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQE---GSQDPATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhc---cCcchHHHhhhhheeecCCCChHHhcccCCcc
Confidence 2222222222 2222333333333344444443 35678899999998887776222
Q ss_pred ----HHHHHHHc-------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHhh-----------cC-----
Q 047480 266 ----AERVFSTM-------------------GMSKSTAAWSSMISGYTREGKIERARQLFDQ-----------MD----- 306 (719)
Q Consensus 266 ----a~~~~~~~-------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----------m~----- 306 (719)
.-++.++- .+......|..+.+...+..+.+-=.+++.+ ..
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 11111111 1111122344444444555554443333321 11
Q ss_pred C-CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-ChhHHHHHH----------------------------HHHH
Q 047480 307 Q-RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-DEVTMVAVL----------------------------RACV 356 (719)
Q Consensus 307 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll----------------------------~a~~ 356 (719)
+ .|...-..-..++...+-+.+-++++++..-..-.. ....+..++ ..+.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 1 344445556778888888899999988876432111 111111111 1122
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
..+-+++|..+|.. +..+....+.||+ .-++++.|.+.-++..+ +..|..+..+-.+.|...+|++-
T Consensus 1060 ~~~LyEEAF~ifkk------f~~n~~A~~VLie---~i~~ldRA~efAe~~n~----p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKK------FDMNVSAIQVLIE---NIGSLDRAYEFAERCNE----PAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhhHHHHHHHHHHH------hcccHHHHHHHHH---HhhhHHHHHHHHHhhCC----hHHHHHHHHHHHhcCchHHHHHH
Confidence 22333444444431 1122233333332 23556666666555533 55799999999999999999987
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 047480 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS 516 (719)
Q Consensus 437 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~ 516 (719)
|-+ .-|...|..++..+++.|.+++-.+++...++..-+|.+. +.|+-+|++.+++.|-++++. .||.
T Consensus 1127 yik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~ 1194 (1666)
T KOG0985|consen 1127 YIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNV 1194 (1666)
T ss_pred HHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCc
Confidence 753 2366789999999999999999999999888766677766 468999999999999888775 3677
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
.-...+.+-|...|.++.|.-++.. .+.|..|+..+...|.+.-|...-++.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7778888889999999988877654 467888888888888888887665554
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=2.5e-08 Score=109.74 Aligned_cols=212 Identities=14% Similarity=0.025 Sum_probs=161.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC
Q 047480 360 ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA---------KCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 429 (719)
++++|.+.++ ...+.. +.+...+..+..+|. ..+++++|...+++..+. +.+...|..+...+...|+
T Consensus 276 ~~~~A~~~~~-~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLT-QCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHH-HHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4578888888 444333 234455555555544 234578999999988776 6678889999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
+++|+..|++..+. .|+. ..+..+...+...|++++|...++++.+. .|+. ..+..+...+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999985 5664 47777888899999999999999999874 4542 23334455677789999999999
Q ss_pred HhCC--CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 508 QSMP--YDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 508 ~~~~--~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.- ..|+. ..+..+..++...|+.++|...++++....|++......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8862 23544 446666666888999999999999998888888778888888888888 5888877777653
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=3.1e-06 Score=81.21 Aligned_cols=190 Identities=13% Similarity=0.097 Sum_probs=126.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL-------GETSIAVFREMELMGLKPDGV-TFVTVLC 457 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 457 (719)
.|+-.|.+.+++++|..+...+.. .++.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ ---++.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 466678999999999999988876 333333322223444443 334555554443455444433 2233444
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH-HhcCChhH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY-D-ANSVIWRALLAAC-RLHRNAKI 534 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~-~-p~~~~~~~ll~~~-~~~g~~~~ 534 (719)
++.-..++++.+-++..+..+-...|...+| +..+++..|++.+|+++|-.+.. + .|..+|.+++.-| .+.+..+.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 4455567889999998888765555666665 78899999999999999988742 1 4778888887765 56677877
Q ss_pred HHHHHHHHhccC-CCC-chhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 535 GEIAGQKLLDLE-PDH-GAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 535 a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|..++ ++.+ |.+ ......+++-|.++|.+--|.+.|+.+.....
T Consensus 447 AW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 76544 4433 322 23455778899999999999999999886543
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.99 E-value=1.3e-05 Score=83.30 Aligned_cols=254 Identities=11% Similarity=0.088 Sum_probs=140.5
Q ss_pred HHHHHHhcc--ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHH
Q 047480 11 LLALLESCK--SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYS 84 (719)
Q Consensus 11 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 84 (719)
|..+++.-- .+..+......|++.-... +.+.-.=+..++- |+-++|......... .+.++|..+.-.+.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l----g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL----GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcc----cchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 444454332 5667777777777755544 5555555555554 888888777665443 56678888888888
Q ss_pred cCCCchHHHHHHHHhHhCCCCCCCc-ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 047480 85 RSDSPQEALVLYTSMLSKGIVSPNN-FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNA 163 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 163 (719)
...++++|++.|...+..+ ||. ..+--+.-.-++.|+++.......+..+.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql------------------------- 138 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL------------------------- 138 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-------------------------
Confidence 8889999999999888876 443 33332222222333333332222222211
Q ss_pred HHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCC-CCCChhhHHHHHH------HHhccCCcHHHHHHHHHH
Q 047480 164 HKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSC-IQPDAFTFVAMFS------ACTELNDPRIGKQFHAVV 236 (719)
Q Consensus 164 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~i~~~~ 236 (719)
....-..|..+..++--.|+...|..++++..+.. -.|+...|.-... .....|.++.+.+.....
T Consensus 139 -------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 139 -------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 11234567777777777777777777777776543 2455554433221 123445555555444433
Q ss_pred HHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHHH-HHHHHHHHhcCCHHHHH-HHHhhcC
Q 047480 237 YKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAW-SSMISGYTREGKIERAR-QLFDQMD 306 (719)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~~-~~li~~y~~~g~~~~A~-~~f~~m~ 306 (719)
... +......--.-...+.+.++.++|..++... ...||..-| -.+..++.+-.+.-++. .+|....
T Consensus 212 e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 212 EKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred hhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 322 2233333444556677777777777777766 334444433 33444444333333333 5555443
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=96.30 Aligned_cols=234 Identities=12% Similarity=0.084 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047480 314 TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393 (719)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 393 (719)
+.|..+|.+.|.+.+|..-|+..... .|-..||..+-++|.+..+.+.|..++.+-+.+ ++.++.....+...+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 44556666666666666666666554 445556666666677777777776666633332 23444444555666777
Q ss_pred cCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
.++.++|.++|+...+. +.++.+..++..+|.-.++++-|+..|+++.+.|+. +...|+.+.-.|...+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78888888888887665 567778888888999999999999999999999864 5667777777888999999999999
Q ss_pred HHHHHcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 473 ESMLNYGIKPQ--MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 473 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
++....--.|+ ...|-.+.......|++.-|.+-|+-. ...| +...++.|.-.-.+.|+++.|..++..+..+.|+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99885444455 567888888888999999999999876 3334 4567888887788999999999999999999987
Q ss_pred Cchh
Q 047480 549 HGAH 552 (719)
Q Consensus 549 ~~~~ 552 (719)
-.+.
T Consensus 462 m~E~ 465 (478)
T KOG1129|consen 462 MAEV 465 (478)
T ss_pred cccc
Confidence 5443
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=1.3e-06 Score=91.09 Aligned_cols=399 Identities=15% Similarity=0.167 Sum_probs=204.5
Q ss_pred HHhccCCcHHHHHHHHHHH-------HhC-CCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCC
Q 047480 118 SCARLSSFKSGCQIHCHII-------KFG-LEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVK 189 (719)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~-------~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 189 (719)
+++..|++..++.+|+... +.| -..+-+-..+++.+.. .++.+|..+|-+-. + -...|..|....
T Consensus 499 cfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lh 571 (1636)
T KOG3616|consen 499 CFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELH 571 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHH
Confidence 3444556666666655432 112 1122222333333332 45667777663311 1 122345555555
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 190 EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
++++|+.+-+. .|.+.-...-.+-++++...|+-+.|-++ ..+..-..+-|+.|.+.|....|.+.
T Consensus 572 kwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el-----------k~sdgd~laaiqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 572 KWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL-----------KESDGDGLAAIQLYIKAGKPAKAARA 637 (1636)
T ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh-----------ccccCccHHHHHHHHHcCCchHHHHh
Confidence 66666655332 12111111122334444455544444322 11122224556777777776666554
Q ss_pred HHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--------------------------hhH-HHHHHHHH
Q 047480 270 FSTM-GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDL--------------------------VSW-TAMISGYS 321 (719)
Q Consensus 270 ~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~--------------------------~~~-~~li~~~~ 321 (719)
...- .+..|......+..++.+..-++.|-.+|+.+..++- +.. ......+.
T Consensus 638 a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 638 ALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred hcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 3221 2333444444444444444444555555554443211 100 01112233
Q ss_pred hcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 047480 322 QVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTAL 401 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 401 (719)
+.|+++.|+..|-+... ..-.+.+......+.+|..+++ -+.... ...-.|.-+.+-|+..|+++.|+
T Consensus 718 ~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild-niqdqk--~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD-NIQDQK--TASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH-Hhhhhc--cccccchHHHHHhccchhHHHHH
Confidence 44445555444433221 1122334445566667777766 444332 22234556677788888888888
Q ss_pred HHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc
Q 047480 402 SVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK 481 (719)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 481 (719)
++|.+... ++-.|..|.+.|++++|.++-.+.. |.......|..-..-.-..|.+.+|.++|-.+- .
T Consensus 786 ~lf~e~~~-------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~ 852 (1636)
T KOG3616|consen 786 ELFTEADL-------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----E 852 (1636)
T ss_pred HHHHhcch-------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----C
Confidence 88765443 5667777888888888877765543 222223345544445566677777776663221 3
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
|+. -|.+|-+.|..++.+++..+-.-+.-..+-..+..-+...|++..|+.-|-++ .-+-.-.++|.
T Consensus 853 p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk 919 (1636)
T KOG3616|consen 853 PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYK 919 (1636)
T ss_pred chH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhh
Confidence 442 35677788888887777776532222234455555566777777777765543 33556677888
Q ss_pred hcCChHHHHHHHHH
Q 047480 562 ETYRWEEARQVRKL 575 (719)
Q Consensus 562 ~~g~~~~A~~~~~~ 575 (719)
..+.|++|.++-+.
T Consensus 920 ~s~lw~dayriakt 933 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhHHHHHHHHhc
Confidence 88888888776554
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=4.2e-08 Score=88.76 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=140.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDL 493 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 493 (719)
+...+.-+|.+.|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+...+. .|+ ..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3555677899999999999999999984 67664 8888999999999999999999999863 444 7788899999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 047480 494 LARDGRLDEAYGLIQSMPYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA 569 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (719)
++..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++++|+.+.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999844443 457888877778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 047480 570 RQVRKLMDDSGI 581 (719)
Q Consensus 570 ~~~~~~m~~~~~ 581 (719)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887765
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=3.7e-06 Score=91.18 Aligned_cols=544 Identities=12% Similarity=0.010 Sum_probs=302.3
Q ss_pred HHHHHHHHHHhCCCh--hchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHH
Q 047480 24 ALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTS 98 (719)
Q Consensus 24 ~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 98 (719)
+..+|..+....+++ ...|..|-.-|.. . .+...|.+.|++.-+ -+..+|......|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd--~-~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRD--S-DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHH--H-HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 344444444444443 4667778788887 6 677889999988755 4566788999999999999999988433
Q ss_pred hHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhH
Q 047480 99 MLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSY 178 (719)
Q Consensus 99 m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 178 (719)
.-+......-...|..+.-.+...++...+..-|+...+.. +-|...|..|..+|.++|++..|.++|++...-++.+|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 32222100011223333334556778888888888887766 56788999999999999999999999987665444433
Q ss_pred HH---HHHHHHcCCCcchHHHHHHHHHHC------CCCCChhhHHHHHHHHhccCCc-------HHHHHHHHHHHHhhCC
Q 047480 179 NT---LINGYAQVKEPCPALWLFRKMQDS------CIQPDAFTFVAMFSACTELNDP-------RIGKQFHAVVYKNLGC 242 (719)
Q Consensus 179 ~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~-------~~a~~i~~~~~~~~~~ 242 (719)
-. .....+..|.+.+|++.+...... +..--..++......+...|-. +...+.+...... .
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h--~ 708 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH--S 708 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--h
Confidence 22 122345678888888888776532 1111112222222222222222 2222222222222 1
Q ss_pred CCCchHHHH-------------------HHHHHHHh----cCCh---HH---HHHHH-HHcCCCCchHHHHHHHHHHHh-
Q 047480 243 VGSNMLLKT-------------------AVINMYAK----CGLM---NM---AERVF-STMGMSKSTAAWSSMISGYTR- 291 (719)
Q Consensus 243 ~~~~~~~~~-------------------~li~~y~~----~g~~---~~---a~~~~-~~~~~~~~~~~~~~li~~y~~- 291 (719)
...+...|- .++..+.+ .+.. +- +.+.+ ....+..+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 111111111 11111111 1111 00 00000 000222234445555444443
Q ss_pred ---cC----CHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 292 ---EG----KIERARQLFDQMD---QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 292 ---~g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
+| +...|...+.... ..+...||.|.-. ...|++.-|...|-+-.... +-...+|..+--.|....++
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccH
Confidence 12 2234444454433 2566677766544 44456666666665554432 33455666666666777778
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-----CCCC-CCChhcHHHHHHHHHhCCChhHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK-----IPKN-LKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~-----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
+.|.+.+. ...... +.+...|-...-.-...|+.-++..+|.. +.+. .++..-|-....-..++|+.++-+.
T Consensus 867 E~A~~af~-~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 867 EHAEPAFS-SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHhhHHHH-hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 88888777 444332 23333333332333456777777777765 1221 3455556666666677777666555
Q ss_pred HHHHHHHc---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHH----HHHHHHhcCCHH
Q 047480 436 VFREMELM---------GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGC----MVDLLARDGRLD 501 (719)
Q Consensus 436 ~~~~m~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~----li~~~~~~g~~~ 501 (719)
.-++.... |.+-+...|.......-+.+....+.+...+++ =...+-+...|+. +...+...|.++
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 54443321 223334677777777777788877777766654 1112344555553 334555678888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 502 EAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA---HYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 502 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.|..-+...+..-|..+-.+-++. .-.++++.+...|++++.+..++.. ....++.....+|.-+.|...+-+...
T Consensus 1025 ~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1025 SAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 887777666655555555555544 3457899999999999986554433 233444455667777778776665554
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=8.4e-06 Score=85.27 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=161.2
Q ss_pred HHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHH
Q 047480 154 YSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFH 233 (719)
Q Consensus 154 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 233 (719)
+...|+++.|..-|-+.. ..-..|.+-.....+.+|+.+++.++... .-..-|..+..-|+..|+++.|+++|
T Consensus 716 l~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHH
Confidence 344566666665553211 11123455567788999999999887653 23345777888899999999999998
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 047480 234 AVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312 (719)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (719)
-..-. ++--|.+|.+.|++++|+++-.+. |.+.....|-+-..-.-+.|++.+|++++-.+..|+.
T Consensus 789 ~e~~~-----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-- 855 (1636)
T KOG3616|consen 789 TEADL-----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-- 855 (1636)
T ss_pred Hhcch-----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH--
Confidence 76533 366799999999999999999887 7777777888888888899999999999998888875
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
-|..|-+.|..+..+++..+-....+ ..|-..+..-+...|++..|..-|- . ..-+.+-++||-
T Consensus 856 ---aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~fl-e---------a~d~kaavnmyk 919 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFL-E---------AGDFKAAVNMYK 919 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHH-h---------hhhHHHHHHHhh
Confidence 47789999999999988876532211 2345556677778899988887654 1 123567889999
Q ss_pred hcCChHHHHHHHhcC
Q 047480 393 KCGSIDTALSVFYKI 407 (719)
Q Consensus 393 k~g~~~~A~~~~~~~ 407 (719)
..+-+++|.++-+.-
T Consensus 920 ~s~lw~dayriakte 934 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTE 934 (1636)
T ss_pred hhhhHHHHHHHHhcc
Confidence 999999999887654
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.92 E-value=4.5e-06 Score=86.66 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=56.3
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHH
Q 047480 121 RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWL 197 (719)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 197 (719)
..+++..+....+.+++ +++....+.....-.+...|+.++|......... ++.+.|+.+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45566667776666666 3333334444333344556888888877765444 4567899888888888899999999
Q ss_pred HHHHHHC
Q 047480 198 FRKMQDS 204 (719)
Q Consensus 198 ~~~m~~~ 204 (719)
|+.....
T Consensus 98 y~nAl~~ 104 (700)
T KOG1156|consen 98 YRNALKI 104 (700)
T ss_pred HHHHHhc
Confidence 9888764
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.4e-05 Score=86.56 Aligned_cols=348 Identities=14% Similarity=0.138 Sum_probs=204.5
Q ss_pred HHHHHHHCCCC--CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCC------------
Q 047480 197 LFRKMQDSCIQ--PDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGL------------ 262 (719)
Q Consensus 197 ~~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~------------ 262 (719)
+.++....++. -|+...+...+++...+-+.+-.++++.++-..+.+..+....|.|+-...|...
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN 1048 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc
Confidence 44444443332 3445555666777777777777777777665544555555566655554444433
Q ss_pred ---------------hHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 047480 263 ---------------MNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFS 327 (719)
Q Consensus 263 ---------------~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 327 (719)
+++|..+|++. ..+....+.||+- -+.++.|.+.-++..+| ..|..+..+-.+.|...
T Consensus 1049 yDa~~ia~iai~~~LyEEAF~ifkkf--~~n~~A~~VLie~---i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1049 YDAPDIAEIAIENQLYEEAFAIFKKF--DMNVSAIQVLIEN---IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHh--cccHHHHHHHHHH---hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchH
Confidence 45555555543 2233333333332 24455555555554443 46888888888889888
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
+|++-|-+. -|+..|..++.++.+.|.++.-..++. +..+..-.|. +-+.||-+|++.+++.+-++.+..-
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~-MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gp 1192 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL-MARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGP 1192 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH-HHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCC
Confidence 888877543 256778889999999999998888887 7777664444 4467888899988888776655321
Q ss_pred CCC---------------------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 408 PKN---------------------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 408 ~~~---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
... ..++.-|..+...+...|+++.|.+.-++. -+..||..+-.+|...+.+.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 000 112334566666666666666666554432 23457777777777665543
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
-| +|.-.++.....-..-|+..|-..|.++|-+.+++.. +.+ ..-..++-|.-.|.+.. .++-.+.++-...
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWS 1340 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 32 2333334445566677888888888888888888765 332 23344554444444432 3333322222221
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 545 LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
....--++.++..+.-|.|..-++.+-.
T Consensus 1341 -----RvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1341 -----RVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred -----hcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0112235666667777777766655543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=7.8e-07 Score=89.55 Aligned_cols=229 Identities=8% Similarity=-0.072 Sum_probs=150.2
Q ss_pred CChhHHHHHHHHhHhcC-CCCC--hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 324 GGFSQALELFGKMESLG-IHPD--EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 324 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+. ...+.. +.+...++.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~-~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFS-QALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666432 2222 2345555666777788888887777 444433 35577888888889999999999
Q ss_pred HHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 047480 401 LSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG 479 (719)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 479 (719)
...|++..+. +.+...|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 9999887665 456778888888999999999999999998874 565542222222344567899999999776532
Q ss_pred CccChhHHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-c
Q 047480 480 IKPQMEHYGCMVDLLARDGRLD--EAYGLIQSM-PY----DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-G 550 (719)
Q Consensus 480 ~~p~~~~~~~li~~~~~~g~~~--eA~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~ 550 (719)
..|+...+ .++..+ .|+.. ++.+.+.+. .. .| ....|..+...+...|+.++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 333333 44443 333333321 11 12 23578888889999999999999999999999744 4
Q ss_pred hhHHHHHHHH
Q 047480 551 AHYVLLSNML 560 (719)
Q Consensus 551 ~~~~~l~~~~ 560 (719)
.+-..++...
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=0.00019 Score=76.66 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 531 NAKIGEIAGQKLLDLEPDHG------AHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+..+++.-.+-+++ +|..+ ..|..|+..|....+|..|.+.+++|..+
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 44444444444443 34332 46889999999999999999999999875
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.4e-05 Score=74.07 Aligned_cols=298 Identities=12% Similarity=0.030 Sum_probs=190.5
Q ss_pred CCCCchHHHHHHHHHHHh--cCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChh
Q 047480 274 GMSKSTAAWSSMISGYTR--EGKIERARQLFDQMD-----QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV 346 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~--~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 346 (719)
..+|.......-+.+|+. .++-..|...|-... ..|+.....+...+...|+..+|+..|++.+.. .|+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhh
Confidence 334444444444444444 344444444443222 357778889999999999999999999988754 44433
Q ss_pred HHH-HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHH
Q 047480 347 TMV-AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGL 424 (719)
Q Consensus 347 t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~ 424 (719)
+-. ...-.+...|+.+....+.............. |-.-........+++.|..+-++..+. ++++..+-.-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~--wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH--WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh--hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 211 11222345666666665555233322111111 111122233456777887777765553 45566666556778
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH-HHHHh-cCCHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV-DLLAR-DGRLD 501 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~ 501 (719)
.+.|++++|.=.|+..+. +.|.. ..|..|+..|...|...+|.-.-+...+. +..+..+...+. +.+.- ..--+
T Consensus 345 ~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 888999999988988876 46544 58999999999999998888776665532 233444444442 22222 22346
Q ss_pred HHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 502 EAYGLIQSM-PYDANSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 502 eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|.+++++. ..+|+-. ..+.+...|...|..+.+..++++.+...||+ ..+..|++.+...+.+++|.+.|......
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888775 6677654 44555566888899999999999999888875 67888999999999999998888877643
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=8.3e-06 Score=86.44 Aligned_cols=442 Identities=15% Similarity=0.064 Sum_probs=213.5
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~l 115 (719)
..+|-.|.=+..+ | |+++.+-+.|++... -....|+.+-..|+..|.-..|+.+.+.-......|+|...+-..
T Consensus 323 ~ai~d~Lt~al~~--~-g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 323 AAIFDHLTFALSR--C-GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred HHHHHHHHHHHHH--H-HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 6788888888888 8 999999999988643 344569999999999999999999988866555443455555555
Q ss_pred HHHHh-ccCCcHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCC
Q 047480 116 LNSCA-RLSSFKSGCQIHCHIIKFG--L--EFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKE 190 (719)
Q Consensus 116 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 190 (719)
-+.|. +.+.++++..+-.+++... . ......+-.+.-+|...-. ...+|.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------HHHH
Confidence 56665 4567777777666666521 1 1222333333333332110 0000000 0001
Q ss_pred cchHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 191 PCPALWLFRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 191 ~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
..++++.+++..+.+ -.|+..-|.++ -++..++++.|.+...+..+. +-..+...|..|.-.+...+++.+|+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l--~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALAL--NRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 123444444443321 12222222222 123344455555555555544 3344444555555555555555555554
Q ss_pred HHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC--Ch
Q 047480 270 FSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHP--DE 345 (719)
Q Consensus 270 ~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~ 345 (719)
.+.. ....|......-+..-...++.++|......+.. .|-.. .+..+.++-...+++...+.-.--.| ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 4443 1111111111112222234555555555444321 11110 11122222333344443332110011 11
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCC------hhcHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT------VSLFNS 419 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~------~~~~~~ 419 (719)
.|+..+..-... .....+.+ .....+...+. ++ ...|..
T Consensus 611 s~sr~ls~l~a~-------------~~~~~~se--------------------~~Lp~s~~~~~--~~~~~~~~~~lwll 655 (799)
T KOG4162|consen 611 STSRYLSSLVAS-------------QLKSAGSE--------------------LKLPSSTVLPG--PDSLWYLLQKLWLL 655 (799)
T ss_pred hhhHHHHHHHHh-------------hhhhcccc--------------------cccCcccccCC--CCchHHHHHHHHHH
Confidence 222222221110 00000000 00000111111 11 123444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhc
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARD 497 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 497 (719)
....+...++.++|...+.+.... .|- ...|......+...|..++|.+.|..... +.|+ +....++..++.+.
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHh
Confidence 445555555555555554444432 222 22344343445556666666666666554 3444 55666666777777
Q ss_pred CCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 498 GRLDEAYG--LIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 498 g~~~eA~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
|+..-|.. ++..+ ...| +...|-.+.....+.|+.+.|-..|..+.++++.+|.
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 76555555 66555 4444 5567777777777778888777777777777776653
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=1.1e-06 Score=79.86 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCA 458 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 458 (719)
..++..+...|.+.|+.+.|.+.|++.... +.+-...|....-+|..|++++|...|++....-.-|.. .||..+.-+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 334455556666667777777777665544 466667777777788888888888888887764322322 467777766
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a 535 (719)
..+.|+.+.|..+|++.++. .|+ ....-.+.......|++-.|..+++.. ...+...+.-..|..-...||.+.+
T Consensus 149 al~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 67788888888888888763 344 556667778888888888888888776 2335555555555666777888888
Q ss_pred HHHHHHHhccCCCCch
Q 047480 536 EIAGQKLLDLEPDHGA 551 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~ 551 (719)
-+.-.++....|....
T Consensus 227 ~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 227 QRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhCCCcHH
Confidence 8877777788887643
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=3.7e-05 Score=82.11 Aligned_cols=280 Identities=12% Similarity=0.106 Sum_probs=184.7
Q ss_pred HhhccCCCCChHHHHHHhccCCC--CCccHH-HHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHh----
Q 047480 48 FFALSGCKNGLFRSRILFSQIDN--PNIFIW-NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCA---- 120 (719)
Q Consensus 48 ~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~---- 120 (719)
.+.. . |+++.|...++.... .|..+| ......+.+.|+.++|..+|..++..+ |+...|-..+..|.
T Consensus 13 il~e--~-g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEE--A-GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHH--C-CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhc
Confidence 3455 6 999999999877654 555444 567788889999999999999999998 88887777766665
Q ss_pred c--cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH-HHHHHccCCCCCh-hhHHHHHHHHHcCCCcchHHH
Q 047480 121 R--LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN-AHKVFEGSLARDL-VSYNTLINGYAQVKEPCPALW 196 (719)
Q Consensus 121 ~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~-A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~ 196 (719)
. ..+.+.-.++++.+...- |.......+.-.+..-..+.. +......+..+.+ ..++.|-..|.......-..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 2 224566777787776543 221111111111111112222 2223333444444 456666666665555555555
Q ss_pred HHHHHHHC----C----------CCCCh--hhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhc
Q 047480 197 LFRKMQDS----C----------IQPDA--FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKC 260 (719)
Q Consensus 197 ~~~~m~~~----g----------~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~ 260 (719)
++...... + -.|+. .++..+...+...|+.+.|....+.+++. .|..+..|..-...|-+.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHC
Confidence 55555432 1 12333 24455566677899999999999999887 466688899999999999
Q ss_pred CChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hH--HHHHHHHHhcCCh
Q 047480 261 GLMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKIERARQLFDQMDQRDLV----------SW--TAMISGYSQVGGF 326 (719)
Q Consensus 261 g~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~--~~li~~~~~~g~~ 326 (719)
|++++|.+.++.. .+++ |-..-+-.+..+.++|++++|.+++....+++.. .| ..-..+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999887 4444 4455566677788999999999998887765421 33 3345778899999
Q ss_pred hHHHHHHHHhHh
Q 047480 327 SQALELFGKMES 338 (719)
Q Consensus 327 ~~A~~~~~~m~~ 338 (719)
..|+.-|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888877766654
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00021 Score=73.88 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHhCCCh-hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHH--HcCCCchHHHHHH
Q 047480 20 SLKQALQIHGQIVHSGLNH-HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGY--SRSDSPQEALVLY 96 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~ 96 (719)
+++++.+.-..++..+.++ +.+...++.. .+ . +.+++|..+.+.-+...+...-.+=.+| .+.+..++|+..+
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvVal-Iq--~-~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVAL-IQ--L-DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhh-hh--h-hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 6788888888888887666 4555555554 44 4 7888888776654431111111123333 4577888888887
Q ss_pred HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHccCCCCCh
Q 047480 97 TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLE-FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDL 175 (719)
Q Consensus 97 ~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 175 (719)
+ |..+.|..+...-...|-+.+++++|..+|..+.+.+.+ .+...-..++.+-. .-.+. +.+..+....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCc
Confidence 7 322133445555566677888888888888888877642 22233333332211 11121 3444444433
Q ss_pred hhHHHH---HHHHHcCCCcchHHHHHHHH
Q 047480 176 VSYNTL---INGYAQVKEPCPALWLFRKM 201 (719)
Q Consensus 176 ~~~~~l---i~~~~~~g~~~~A~~~~~~m 201 (719)
.+|..+ .-.+...|++.+|+++++..
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344333 33455678888888888776
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.6e-07 Score=96.01 Aligned_cols=220 Identities=11% Similarity=0.008 Sum_probs=169.1
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSI 434 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 434 (719)
.+.|++..|.-.|+ ...+.. +.+...|.-|.......++-..|+..+++..+. +.|....-+|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafE-AAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFE-AAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHH-HHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 45666777776776 343333 356667777777777777777888888777665 567778888888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 047480 435 AVFREMELMGLK--------PDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 435 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 505 (719)
..++.-+....+ ++..+-.. ..+.....+....++|-++. ..+..+|.....+|.-+|.-.|.++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887664211 01110000 12233334556667777776 66667889999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 506 LIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 506 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
-|+.+ ..+| |...||-|....+...+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-.....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99987 5677 67899999999999999999999999999999999999999999999999999999998877653
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=8.8e-06 Score=86.76 Aligned_cols=281 Identities=12% Similarity=0.080 Sum_probs=179.7
Q ss_pred HHHHhcCChHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHH-HHHHHHHh-----cC
Q 047480 255 NMYAKCGLMNMAERVFSTM-G-MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWT-AMISGYSQ-----VG 324 (719)
Q Consensus 255 ~~y~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~-~li~~~~~-----~g 324 (719)
..+...|++++|+..+.+. . +.....+.......|.+.|+.++|..+|..+.+ |+-..|. .+..+... ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 4456677888888877776 3 334455667777888888888888888888875 4444443 33333311 12
Q ss_pred ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChH-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047480 325 GFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALD-FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSV 403 (719)
Q Consensus 325 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 403 (719)
+.+...++|+++... -|.......+.-.+.....+. .+..+.. ...+.|++ .+++.|-..|......+-..++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~-~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLR-PQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHH-HHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 456677778877654 243333322222222211222 2223333 34445543 3455666666644444444444
Q ss_pred HhcCC----------------CCCCChhcH--HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc
Q 047480 404 FYKIP----------------KNLKTVSLF--NSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGL 464 (719)
Q Consensus 404 ~~~~~----------------~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 464 (719)
+.... ..+|....| .-+...|-..|++++|+++.++.++. .|..+ .|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 43321 113444455 44566788999999999999999985 67754 77788888999999
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CC--C----HHHHHHH--HHHHHhcCChh
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY---DA--N----SVIWRAL--LAACRLHRNAK 533 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~---~p--~----~~~~~~l--l~~~~~~g~~~ 533 (719)
+++|.+..+...... .-|...-+-.+..+.|+|++++|.+++..... .| | ...|--+ ..+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998654 34566777778889999999999998877632 22 1 1245433 45588999999
Q ss_pred HHHHHHHHHhc
Q 047480 534 IGEIAGQKLLD 544 (719)
Q Consensus 534 ~a~~~~~~~~~ 544 (719)
.|++.+..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=4.6e-07 Score=89.84 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=135.0
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
.-.|++..++.-.+ .....-..+..+...+.+++...|+.+.+.. .+.+.. .|.......+...+...++-+.+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS----EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 34456666654444 2111111122333444555555565443221 121222 34444333333333332344455
Q ss_pred HHHHhcCCCC--C-CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 401 LSVFYKIPKN--L-KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 401 ~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
..-++..... . .+....-.....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5545443322 1 12211112223455567788877776532 2445556666777788888888888888875
Q ss_pred cCCccChhHHHHHHH----HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 478 YGIKPQMEHYGCMVD----LLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 478 ~g~~p~~~~~~~li~----~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
. ..| .+...|.. .+.-...+.+|..+|+++. ..+++.+.+.+..+....|++++|+..++++++.+|+++.
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 3 233 22222333 3322346888888888873 3467777788888888889999999999999888998888
Q ss_pred hHHHHHHHHhhcCCh-HHHHHHHHHHHhC
Q 047480 552 HYVLLSNMLAETYRW-EEARQVRKLMDDS 579 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 579 (719)
+...++-+....|+. +.+.+++.+++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888888888888888 6677788887753
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=2.4e-05 Score=85.10 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=118.0
Q ss_pred HHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 399 TALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 399 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
.|...+.+..+. ..+...||+|.-. ...|++.-|...|-+-... .+-+..+|..+.-.|....+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 455555554332 3677788887665 6667777777777665553 234556888888788889999999999988875
Q ss_pred cCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHH----------HH
Q 047480 478 YGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-------PYDANSVIWRALLAACRLHRNAKIGEI----------AG 539 (719)
Q Consensus 478 ~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~~ 539 (719)
+.|+ ...|-...-.....|+.-++..+|..- +.-|+...|-....-...+|+.++-+. +.
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 3344 566655555566778888888887652 123555566555555566666655444 34
Q ss_pred HHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
++.+.-.|+...+|...+...-+.+.+++|.+.....
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556678998889999999998888888887776554
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=1.8e-05 Score=82.79 Aligned_cols=296 Identities=9% Similarity=-0.081 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhh---HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHH---
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ---RDLVS---WTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVA--- 350 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~--- 350 (719)
.+..+...|...|+.+++.+.+....+ ++... .......+...|++++|.+.+++..+. .|+ ...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 344444455555555554444443321 11111 122233456677788888887777665 333 223221
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC
Q 047480 351 VLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 351 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 429 (719)
........+....+.+... . .....+........+...+...|++++|...+++.... +.+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLP-L-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHh-c-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 1111112344444444444 2 11111222333445556777888888888888877665 4556677777778888888
Q ss_pred hhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccChhHH-H--HHHHHHHhcCCHHH
Q 047480 430 GETSIAVFREMELMGL-KPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHY-G--CMVDLLARDGRLDE 502 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~e 502 (719)
+++|+..+++...... .|+. ..+..+...+...|++++|..++++...... .+..... + .+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888888887776421 1222 2344566677788888888888888753221 1111111 1 23333444443322
Q ss_pred HHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---------CCchhHHHHHHHHhhcCCh
Q 047480 503 AYGL---IQSM-PYDAN---SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP---------DHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 503 A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~ 566 (719)
+.+. .... +..|+ .........++...|+.+.|...++.+....- .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11011 12222344456777888888888877654211 1234566778888999999
Q ss_pred HHHHHHHHHHHhCC
Q 047480 567 EEARQVRKLMDDSG 580 (719)
Q Consensus 567 ~~A~~~~~~m~~~~ 580 (719)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887643
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=9e-06 Score=82.86 Aligned_cols=437 Identities=13% Similarity=0.085 Sum_probs=225.4
Q ss_pred CChHHHHHHhccC---CCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCC-cccHHHHHHHHhccCCcHHHHHH
Q 047480 56 NGLFRSRILFSQI---DNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPN-NFTFPFVLNSCARLSSFKSGCQI 131 (719)
Q Consensus 56 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 131 (719)
|+++.|.+.|-.. ..+|.+.|+.-..+|++.|++.+|++=-.+-++.. |+ ...|+....+....|++++|..-
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHHHHHHH
Confidence 8888888888664 23677888888888888888888888777766665 43 55788888888888888888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHH-HHHHccCCCCChhhHHHHH-----HHHHcCCCcchHHHHHHHHHHCC
Q 047480 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNA-HKVFEGSLARDLVSYNTLI-----NGYAQVKEPCPALWLFRKMQDSC 205 (719)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 205 (719)
|..-++.. +.+...++.|..++. .+.+ .+.|. ++..|..+. +.+...-.+..-+..+..
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~----- 157 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK----- 157 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-----
Confidence 88777665 566777777877771 1111 11221 111121111 111111111111111100
Q ss_pred CCCChh-h---HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChH-HHHHHHHHcCCCCchH
Q 047480 206 IQPDAF-T---FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMN-MAERVFSTMGMSKSTA 280 (719)
Q Consensus 206 ~~pd~~-t---~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~a~~~~~~~~~~~~~~ 280 (719)
.|+.. . ...++.+.......+.....-....-..++..|. .+..+.. ...+..++.....-..
T Consensus 158 -~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 158 -NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred -CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccCCCCCccchhHHHHHHHHhhh
Confidence 01000 0 0011111111100000000000000000000000 0000000 0000000000000011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHcc
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (719)
-...+.++.-+..+++.|.+-++...+ .++.-++....+|...|.+.++...-....+.|-. ...-|+.+..+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~---- 300 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA---- 300 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH----
Confidence 123344555555555555555554433 22223445555666666666665555544333210 00111111110
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHH
Q 047480 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFR 438 (719)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 438 (719)
...+..+|.+.++++.|...|.+.....++... ..+....++++...+
T Consensus 301 -------------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 301 -------------------------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAE 348 (539)
T ss_pred -------------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHH
Confidence 111344667778888888888775543222111 122233444444444
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047480 439 EMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS 516 (719)
Q Consensus 439 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~ 516 (719)
...- +.|+.. -...-.+.+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+.+|++=.+.. ...|+.
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 4333 344432 22233566778899999999999998654 445888999999999999999888766654 344543
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047480 517 -VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE 562 (719)
Q Consensus 517 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (719)
..|..-..++....+++.|...|++.++++|++......+...+..
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3455555556667889999999999999999987766666665554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=0.0014 Score=77.79 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCC---CC--ChhHHHHHHH
Q 047480 287 SGYTREGKIERARQLFDQMDQ----RDL----VSWTAMISGYSQVGGFSQALELFGKMESLGI---HP--DEVTMVAVLR 353 (719)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~ 353 (719)
..+...|++++|...+++..+ .+. ..++.+...+...|++++|...+.+.....- .+ ...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345567777777777665432 111 2334455556667777777777776653210 11 1123333444
Q ss_pred HHHccCChHHHHHHHH
Q 047480 354 ACVGLGALDFGKRLHQ 369 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~ 369 (719)
.+...|+++.|.+.+.
T Consensus 540 ~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 540 ILFAQGFLQAAYETQE 555 (903)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 5556666666666655
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=0.00011 Score=69.33 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=193.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHH-HHHHhc
Q 047480 147 RNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAM-FSACTE 222 (719)
Q Consensus 147 ~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~ 222 (719)
+++.+..+.+..++++|++++..-.++ +......|..+|....++..|-+.++++-.. -|...-|..- ...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 445555556777888888877654443 4456667777777888888888888877653 3444444211 112223
Q ss_pred cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHH--HhcCCHHHHHH
Q 047480 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY--TREGKIERARQ 300 (719)
Q Consensus 223 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y--~~~g~~~~A~~ 300 (719)
.+.+..|. +++..++-.++...-..-+.+- -..+++..++.
T Consensus 91 A~i~ADAL-------------------------------------rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 91 ACIYADAL-------------------------------------RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred hcccHHHH-------------------------------------HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHH
Confidence 33444444 4444443332222221111111 12445555555
Q ss_pred HHhhcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc-CCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCC
Q 047480 301 LFDQMD-QRDLVSWTAMISGYSQVGGFSQALELFGKMESL-GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFG 378 (719)
Q Consensus 301 ~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 378 (719)
+.++.+ +.+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+. ..+.++.+.|....+ .+...|+.
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iS-EIieRG~r 210 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHIS-EIIERGIR 210 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHH-HHHHhhhh
Confidence 555554 233333333333344555555555555555442 2222 233333322 223444555554444 33333222
Q ss_pred CC---------------------hhHHHHHH-------HHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhC
Q 047480 379 RN---------------------IFLTTAVI-------DMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQH 427 (719)
Q Consensus 379 ~~---------------------~~~~~~li-------~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~ 427 (719)
.. ...-++++ ..+.+.|+.+.|.+.+-.|+.. ..|+++...+.-.- ..
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 11 01112333 3456789999999999999875 45677766554322 24
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccChhHHHHHHHHHH-hcCCHHHHH
Q 047480 428 GLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQMEHYGCMVDLLA-RDGRLDEAY 504 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~-~~g~~~eA~ 504 (719)
+++.+..+-+.-+.+. .| ...||..++-.|++..-++-|-.++.+-...-+ -.+...|+. ++++. -.-..++|.
T Consensus 290 ~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAF 366 (459)
T ss_pred CCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHH
Confidence 4555555555555553 44 346999999999999888888887754321111 122333443 33333 344566666
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCChhHH----HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 505 GLIQSMPYDANSVIWRALLAA-CRLHRNAKIG----EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 505 ~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+-+..+...--...-..-+.. -.++.+-+.+ .+-+++.+++-- ......++.|.+..++.-+.++|+.-.+.
T Consensus 367 KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 367 KKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 655543100000000000111 1122222222 223333333221 24556778888889999999988876543
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.64 E-value=8e-05 Score=71.57 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=30.2
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++..+++.+|++...++++.+|++..++..-+.+|.-..++++|+.-++...+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 34455555566656666666665555555555555555555555555555544
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1e-05 Score=82.48 Aligned_cols=432 Identities=12% Similarity=0.060 Sum_probs=227.7
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 047480 80 MRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-LFIRNALIHFYSIFG 158 (719)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g 158 (719)
..+....|+++.|+.+|.+..... |+|...|+.-..+++..|+++.|.+--...++.. |+ .--|+.+..+..-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 345667899999999999988776 5788889999999999999998887666665543 44 346777777777789
Q ss_pred ChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCCcchHHHHHHHH-HHCCCCCChhhHHHHHHHHhccCCcHHHHHHHH
Q 047480 159 YINNAHKVFEGSLAR---DLVSYNTLINGYAQVKEPCPALWLFRKM-QDSCIQPDAFTFVAMFSACTELNDPRIGKQFHA 234 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 234 (719)
++++|...|.+-.+. |...++-+..++... . .+.+.|..- .-.++.-++.|=..+-+. .-..+..
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~--------~~~~~l~ 153 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDP--------AYVKILE 153 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccH--------HHHHHHH
Confidence 999999999876553 455666666665111 0 011111100 000111111111100000 0001111
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH
Q 047480 235 VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWT 314 (719)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 314 (719)
.+.+. |.+ +..|........++..+...+. . .....|... .-.+..|...
T Consensus 154 ~~~~~----p~~-------l~~~l~d~r~m~a~~~l~~~~~--~---------~~~~~~~~~-----~~~~~~p~~~--- 203 (539)
T KOG0548|consen 154 IIQKN----PTS-------LKLYLNDPRLMKADGQLKGVDE--L---------LFYASGIEI-----LASMAEPCKQ--- 203 (539)
T ss_pred HhhcC----cHh-------hhcccccHHHHHHHHHHhcCcc--c---------ccccccccc-----CCCCCCcccc---
Confidence 11110 000 0111111111111111111100 0 000000000 0000000000
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.....-..++..+-.+ ..--..-...+.++..+..+++.+.+-+. ...... .++..++.....|...
T Consensus 204 -~~~~~~~~~d~~ee~~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~-~a~el~--~~it~~~n~aA~~~e~ 270 (539)
T KOG0548|consen 204 -EHNGFPIIEDNTEERR---------VKEKAHKEKELGNAAYKKKDFETAIQHYA-KALELA--TDITYLNNIAAVYLER 270 (539)
T ss_pred -cCCCCCccchhHHHHH---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHH-HHHhHh--hhhHHHHHHHHHHHhc
Confidence 0000000000000000 00001112333444444445555555554 222222 3344444455555555
Q ss_pred CChHHHHHHHhcCCCCCCCh-h-------cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 395 GSIDTALSVFYKIPKNLKTV-S-------LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
|.+......-+...+..... . +...+..+|...++++.|+..|.+.......||..+ +....+
T Consensus 271 ~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~E 341 (539)
T KOG0548|consen 271 GKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAE 341 (539)
T ss_pred cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHH
Confidence 55544443333322210111 1 122244466777889999999998776544544322 223445
Q ss_pred HHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 467 EGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
++........- +.|.. .--..=...+.+.|++.+|++.+.++ ...| |...|..-..+|.+.|++..|+.-++..+
T Consensus 342 k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 342 KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555544443 23442 11222266788999999999999987 3445 67788888888999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 544 DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+++|+....|..=+-++....+|+.|.+.+.+..+..
T Consensus 420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999987654
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00071 Score=69.33 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 139 (719)
|+.+|+.||+-+... ..+++.+.|+++...- |-....|..-+..-.+..+++....+|.+.+..-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455666666655444 6666666666665433 2234455555555556666666666666655543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=8.3e-05 Score=79.22 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=144.7
Q ss_pred CChhHHHHHHH--HHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHC-C--------CCCCh
Q 047480 142 FDLFIRNALIH--FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS-C--------IQPDA 210 (719)
Q Consensus 142 ~~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~pd~ 210 (719)
-|..+..++++ .|..-|++|.|.+-.+-+. +-..|..|.+.+.+..+.+-|.-.+..|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666664 3666789998887766554 4567999999999988888877776666432 1 1232
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 047480 211 FTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYT 290 (719)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~ 290 (719)
.+=.-+.-.....|.+++|+.++....+. ..|=..|...|.+++|.++.+.-...-=-.||.....-+-
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 22222222345778899999999888775 5566788899999999988876522222234444455555
Q ss_pred hcCCHHHHHHHHhhcCCC-----------------------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH
Q 047480 291 REGKIERARQLFDQMDQR-----------------------DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347 (719)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 347 (719)
..++.+.|.+.|+....+ |...|.=...-.-..|+.+.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 567788888887765421 111121122222344555566655554432
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 348 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
|-++++..+-.|+.++|.++-++ ..|......|..+|-..|++.+|...|.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444555556666666665542 234555556677777777777777766554
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00025 Score=74.08 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=43.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI--FLTTAVIDMYAK 393 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~k 393 (719)
+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+.+.+......++. ..+..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3345556666666666666665542 2223344444555555555555555555222211111111 122334455555
Q ss_pred cCChHHHHHHHhcC
Q 047480 394 CGSIDTALSVFYKI 407 (719)
Q Consensus 394 ~g~~~~A~~~~~~~ 407 (719)
.|++++|..+|++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555554
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.7e-05 Score=72.37 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=152.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHH-HHHHHHhcCC
Q 047480 251 TAVINMYAKCGLMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTA-MISGYSQVGG 325 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~ 325 (719)
++.+..+.+..++++|.+++... .-.| +....+.|...|-...++..|...++++.. |...-|.. -...+-+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 44444555556666666655544 1122 444455555555566666666666655543 22221211 1233445555
Q ss_pred hhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047480 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
+.+|+++...|... |+...-..-+.+. ..-..+++..+..+.+
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaA----------------------------------IkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAA----------------------------------IKYSEGDLPGSRSLVE 136 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHH----------------------------------HhcccccCcchHHHHH
Confidence 55566555555431 1111100001100 0112344445555555
Q ss_pred cCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc----
Q 047480 406 KIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK---- 481 (719)
Q Consensus 406 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~---- 481 (719)
+.+.. .+..+.+......-+.|++++|++-|+...+-+---....|+..+ +..+.|+.+.|.++..++++.|+.
T Consensus 137 Qlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 137 QLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred hccCC-CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 55421 233333333344445555555555555555432122233444433 233445555555555555544432
Q ss_pred ---------cC--------h-------hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChh
Q 047480 482 ---------PQ--------M-------EHYGCMVDLLARDGRLDEAYGLIQSMP----YDANSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 482 ---------p~--------~-------~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~ 533 (719)
|| . ..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 11 1 122333345678999999999999996 23577777665322 2345677
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.+.+-+.-+++++|-.+.++..+.-+|++..-++-|..++.+
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 777777888899998889999999999999999999888765
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=5.3e-06 Score=82.33 Aligned_cols=224 Identities=12% Similarity=0.129 Sum_probs=135.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
-+.++|...|+++.++. +..... .|....+..+...+....+-+.+..-+.+.+.......+..+......+|...
T Consensus 40 ~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 34456666666554432 222222 44444444443333332333333332221221211112333333344567778
Q ss_pred CChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHH
Q 047480 395 GSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH----GGLVEEGKQ 470 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 470 (719)
|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|..
T Consensus 116 ~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 116 GDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHH
Confidence 8888888877664 34555666778888999999999999999863 344 344444444332 346889999
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHHhccCC
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA-KIGEIAGQKLLDLEP 547 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p 547 (719)
+|+++.+. +.+++.+.+.+.-+....|++++|.+++++. ...| |+.++..++..+...|+. +.+.+...++....|
T Consensus 189 ~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 189 IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 99998742 4578888899999999999999999998875 3344 455777777777777877 677888899888899
Q ss_pred CCc
Q 047480 548 DHG 550 (719)
Q Consensus 548 ~~~ 550 (719)
+.+
T Consensus 268 ~h~ 270 (290)
T PF04733_consen 268 NHP 270 (290)
T ss_dssp TSH
T ss_pred CCh
Confidence 865
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=2.2e-05 Score=88.21 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=159.5
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHc--CC-----CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhhHH
Q 047480 244 GSNMLLKTAVINMYAKCGLMNMAERVFSTM--GM-----SKSTAAWSSMISGYTREGKIERARQLFDQMDQR-D-LVSWT 314 (719)
Q Consensus 244 ~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~ 314 (719)
|.+...|-.-|......++.+.|.++.++. .+ +.-..+|.+++++-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 444555555666666666666666665555 12 122457888888777778778888888887762 3 34577
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.+.+....-...+.+..-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888865 234556777788888888888888888885444443334566667777888899
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLV 465 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 465 (719)
|+.+.++.+|+..... |+-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..=.+.|+-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 9999999999987765 667889999999999999999999999999998888765 3555555443344443
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.5e-07 Score=58.16 Aligned_cols=33 Identities=30% Similarity=0.763 Sum_probs=28.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMD 306 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (719)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=1.4e-05 Score=84.32 Aligned_cols=219 Identities=10% Similarity=0.060 Sum_probs=179.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHH
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 353 (719)
+++|-...-..+...+.+.|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.++ +||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 45566666778889999999999999999985 57888999999999999999999888873 889999998888
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 432 (719)
+.-...-+++|.++......+ .-..+.....+.++++++.+.|+.-.+. +--..+|-....+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788998888833322 1122222234478999999999875553 4567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 433 SIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|.+.|..-.. ..||.. .|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999998887 578874 89999999999999999999999999877 456677777888889999999999999887
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=9.7e-06 Score=79.08 Aligned_cols=182 Identities=9% Similarity=-0.031 Sum_probs=114.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh---hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV---SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---- 450 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 450 (719)
.....+..+...|.+.|++++|...|+++... +.+. ..|..+...|.+.|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34455666667777777777777777766543 2222 35566677777777777777777777763 33322
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHHHHcCCccChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047480 451 TFVTVLCACSHG--------GLVEEGKQFFESMLNYGIKPQME-HYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA 521 (719)
Q Consensus 451 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 521 (719)
++..+..++.+. |+.++|.+.|+.+.+. .|+.. .+..+... +....... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 333334444433 5667777777777642 23321 22211111 00000000 01123
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+...+...|+.+.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455788899999999999999987765 468899999999999999999999988764
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=1.3e-05 Score=75.01 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=111.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
+..|...|+++.+..-.+.+. .|. ..+...++.+++...++..++.. +.+...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 345778888777544332221 111 12223667778888888777543 45588899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 501 DEAYGLIQSM-PYDA-NSVIWRALLAA-CRLHRN--AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
++|...+++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 4555 56677777766 466676 59999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 047480 576 MDDSG 580 (719)
Q Consensus 576 m~~~~ 580 (719)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 98754
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.0062 Score=72.41 Aligned_cols=324 Identities=13% Similarity=0.010 Sum_probs=181.0
Q ss_pred HHhcCChHHHHHHHHHcC---CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC---h---h--hHHHHHHHHH
Q 047480 257 YAKCGLMNMAERVFSTMG---MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RD---L---V--SWTAMISGYS 321 (719)
Q Consensus 257 y~~~g~~~~a~~~~~~~~---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~---~---~--~~~~li~~~~ 321 (719)
....|+.+.+...+..+. ...++.........+...|++++|...+....+ .+ . . ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344555666666655541 111222333444555667788887777765421 11 1 1 1112233455
Q ss_pred hcCChhHHHHHHHHhHhcCCCCCh----hHHHHHHHHHHccCChHHHHHHHHHHHHH---cCC-CCChhHHHHHHHHHHh
Q 047480 322 QVGGFSQALELFGKMESLGIHPDE----VTMVAVLRACVGLGALDFGKRLHQQYIEN---VVF-GRNIFLTTAVIDMYAK 393 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~li~~y~k 393 (719)
..|++++|...+++....-...+. .....+...+...|+++.|...+.+.... .+. .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 778888888888877653111121 22334445556778888888877743321 111 0112334455667777
Q ss_pred cCChHHHHHHHhcCCCC-----CC----ChhcHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHh
Q 047480 394 CGSIDTALSVFYKIPKN-----LK----TVSLFNSIISGLAQHGLGETSIAVFREMELM--GLKPD--GVTFVTVLCACS 460 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~ 460 (719)
.|+++.|...+++.... .+ ....+..+...+...|++++|...+++.... ...|. ..++..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888777654321 01 1223444455566678888888888776542 11122 123444555666
Q ss_pred ccCcHHHHHHHHHHHHHcCC-ccChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHh
Q 047480 461 HGGLVEEGKQFFESMLNYGI-KPQMEHY-----GCMVDLLARDGRLDEAYGLIQSMPYD--ANS----VIWRALLAACRL 528 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~~~~~--p~~----~~~~~ll~~~~~ 528 (719)
..|+.++|.+.++.+....- ......+ ......+...|+.+.|.+.+...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77888888888877753110 1111111 11224445578888888887665311 111 113344455677
Q ss_pred cCChhHHHHHHHHHhccCCCCchh------HHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAH------YVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.|+.++|...++++++........ +..++.+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 788888888888888764433222 2355677788888888888888888754
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3e-07 Score=57.81 Aligned_cols=32 Identities=34% Similarity=0.728 Sum_probs=21.0
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 479 GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 479 g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=4.5e-06 Score=73.81 Aligned_cols=122 Identities=8% Similarity=-0.032 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 435 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
.+|++..+ +.|+. +.....++...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++. ...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555554 34553 3345566677788888888888777533 234667777777888888888888888776 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 514 A-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 55677777777777888888888888888888888777766666553
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.45 E-value=0.00022 Score=68.59 Aligned_cols=335 Identities=16% Similarity=0.091 Sum_probs=181.0
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHH---HHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 047480 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFS---ACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVI 254 (719)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li 254 (719)
.-.+...+...|++..|+.-|....+ .|+..|.++.+ .|...|.-..|.+=+..+++
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---------------- 100 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---------------- 100 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----------------
Confidence 34566677777788888777777654 33344444432 23344444444444444443
Q ss_pred HHHHhcCChHHHHHHHHHcCCCCchHH-HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047480 255 NMYAKCGLMNMAERVFSTMGMSKSTAA-WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF 333 (719)
Q Consensus 255 ~~y~~~g~~~~a~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (719)
+.||-.. .-.-...+.+.|.++.|..-|+.+.+.+.. -+....++.+.-..++
T Consensus 101 --------------------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e----- 154 (504)
T KOG0624|consen 101 --------------------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQE----- 154 (504)
T ss_pred --------------------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHH-----
Confidence 3455322 222334566777777777777776542221 0000011110000000
Q ss_pred HHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CC
Q 047480 334 GKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LK 412 (719)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~ 412 (719)
+ ......+..+...|+...+..... .+.+.. +.+...+..-.++|...|++..|..-+....+. ..
T Consensus 155 --~---------~~l~~ql~s~~~~GD~~~ai~~i~-~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 155 --H---------WVLVQQLKSASGSGDCQNAIEMIT-HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred --H---------HHHHHHHHHHhcCCchhhHHHHHH-HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 0 111222223334445555555444 222222 244455555555666666666665554443332 24
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-H---HHHH-------H--HHHhccCcHHHHHHHHHHHHHcC
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-T---FVTV-------L--CACSHGGLVEEGKQFFESMLNYG 479 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~l-------l--~a~~~~g~~~~a~~~~~~m~~~g 479 (719)
++...--+-..+-..|+.+.++...++-++ +.||.. . |..| - ......+.+.++.+-.+...+..
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 444555555555566666666666665554 355542 1 1111 1 11334566777777777776543
Q ss_pred CccC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 480 IKPQ---MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 480 ~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.+.. ...+..+-.+|...|++.+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2211 233445567778889999999988876 56665 667777778888888999999999999999998854432
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 047480 555 LLSNMLAETYRWEEARQVRKLMDDSGIQK 583 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 583 (719)
. .+.|.++.++..++..-|
T Consensus 380 G----------le~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 380 G----------LERAKRLKKQSGKRDYYK 398 (504)
T ss_pred H----------HHHHHHHHHHhccchHHH
Confidence 2 356666666655554433
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.1e-05 Score=82.99 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=133.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCC-----C---C
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIH-----P---D 344 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~ 344 (719)
+.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+..++.-+....+ + +
T Consensus 316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN 395 (579)
T ss_pred hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence 44566777777777777777777777776654 34555666667777777777888887776543210 0 0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHH
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISG 423 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 423 (719)
..+-.. ........+....++|-+.....+...|+.+...|.-.|--.|++++|.+.|+..... |.|...||.|...
T Consensus 396 ~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 396 EDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred ccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 000000 1112222344455555546666776677778888888888888899999988887665 6677889999888
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-.++
T Consensus 474 LAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888888899999888887 578765 33345557888888888888877665
No 116
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=6.3e-05 Score=75.73 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=106.3
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCCh--hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLG--ETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
++++++..++++... +++..+|+-....+.+.|+. ++++++++++.+. .| |..+|.....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 356666666555443 45555666555445555542 5667777777764 33 345666666667777777777777
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHH
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARD---GR----LDEAYGLIQS-MPYDA-NSVIWRALLAACRLH----RNAKIGEIA 538 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~eA~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 538 (719)
++++++.+ .-+...|+....++.+. |. .++++++..+ +...| |...|+.+.+.+... ++..+|...
T Consensus 165 ~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 165 CHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 77777543 22345555555444443 22 2456666644 34455 667898888888773 345678888
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhc
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
+.++.+.+|+++.+...|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 9999999999999999999999864
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.2e-05 Score=84.74 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=129.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCC
Q 047480 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 350 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (719)
.+...+.+.|-...|..+++ . ...+.-+|..|...|+..+|..+..+-.+.+||...|..+.+......-
T Consensus 403 ~laell~slGitksAl~I~E-r---------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFE-R---------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHH-h---------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34444555566666666665 1 2334456666666666666666665554444566666666666555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
+++|.++++.-... .-..+..-....++++++.+.|+.-.+.+ +....+|-.+.-+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 66666666543321 00011111122466666666666555322 22355666666666777777777777766
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 510 M-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 510 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
. ...|| ...||++-.+|.+.++..+|...+.++++-+-++...+....-...+.|.|++|.+.+..+.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5 45664 4578888888888888888888888888777666666666666667788888888887777654
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=2.2e-05 Score=87.05 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=118.8
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYG 488 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~ 488 (719)
+.++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+.+++|....++.... .|+ .....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 35688888999999999999999999999998 588875 7778888999999999999999999864 455 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMP-YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.+..++.+.|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88899999999999999999983 3444 678999999999999999999999999987765444443
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=5.8e-06 Score=73.13 Aligned_cols=107 Identities=11% Similarity=-0.041 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.+++..++ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|
T Consensus 14 ~~~~~al~--~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34555543 3344 4556788999999999999999987 4455 677899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+++.++..++.++...|++++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988754
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.34 E-value=9.5e-06 Score=70.43 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
....-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..+.++..++|++|.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455556677788999999999999987 3455 56788889888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 047480 562 ETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 624 (719)
..|+.+.|++-|+...... ..+|+..++.+..+.+...+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999987531 135676777666666555443
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=4.2e-05 Score=86.05 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=165.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-H
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-V 450 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 450 (719)
+.+...|-..+......+++++|++++++.... ..-...|.++++.-...|.-+...++|++..+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 345667777788888899999999999886543 122347999999888889888899999999884 244 4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA---NSVIWRALLAA 525 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~ 525 (719)
.|..|+..|.+.+..++|-++++.|. +.| -....|..+++.+.+..+-++|..++.++ ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 78888999999999999999999999 555 56889999999999999999999999876 2222 33344455555
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
-.++|+.+++..+|+-.+.-.|.-...|..++++-.+.|..+.++.+|+.....++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 678999999999999999999998899999999999999999999999999987663
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=4.1e-05 Score=74.68 Aligned_cols=184 Identities=9% Similarity=0.013 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChh---cHH
Q 047480 344 DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN-IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVS---LFN 418 (719)
Q Consensus 344 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~---~~~ 418 (719)
....+......+...|+++.|...+++.+....-.+. ...+..+...|.+.|++++|...|+++.+. +.+.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777788889999999999999954444332222 246677889999999999999999998664 22332 466
Q ss_pred HHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHH
Q 047480 419 SIISGLAQH--------GLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489 (719)
Q Consensus 419 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 489 (719)
.+..++.+. |+.++|.+.|+++... .|+.. ....+.... . .. ... ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHH--------HHHHHH
Confidence 666666654 7889999999999875 56553 222211110 0 00 000 011225
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 490 MVDLLARDGRLDEAYGLIQSM----PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788999999999888876 2233 346788888889999999999998888776555
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=8.9e-05 Score=69.21 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=63.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
-..|.-.|+-+.+..+....... +.|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 33344444444444444443222 233334444444444555555555555544432 1333344444444455555555
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHH
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD--ANSVIWRALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~ 538 (719)
+|..-|.+..+.- .-+...++.|.-.|.-.|+++.|..++.+.... .|..+-..|.-.....|++++|+.+
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555444444321 111333444444444444444444444443211 1333333343344444444444443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=8.1e-05 Score=69.47 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047480 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALL 523 (719)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll 523 (719)
.|+......+-.++...|+-+....+....... ...|......++....+.|++.+|...+++. +.+||...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 454433344555666677777777666665421 1334555556778888888888888888887 3445777888888
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+|-+.|+.+.|...+.+++++.|+++..+..|+-.|.-.|+++.|..++......+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888888888776543
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.18 E-value=0.00016 Score=67.63 Aligned_cols=154 Identities=10% Similarity=0.102 Sum_probs=108.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
+-.|.+.|+++......+.+.. +. ..+...++.++++..+++..+.. +.|...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3457777777665544433222 11 01223566677777777777642 3455688888888889999999
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDL-LARDGR--LDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (719)
|...|+...+.. +.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888643 2347777778876 467777 48999999887 4555 5567777777889999999999999999
Q ss_pred hccCCCCchhH
Q 047480 543 LDLEPDHGAHY 553 (719)
Q Consensus 543 ~~~~p~~~~~~ 553 (719)
+++.|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99988765444
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.00042 Score=77.83 Aligned_cols=234 Identities=8% Similarity=0.055 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--RDLV-SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 354 (719)
+...+..|+..|...+++++|.++.+...+ |+.. .|-.+...+.+.++..++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 455677777777777777777777765443 3322 333333355566665555444 2221 1
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHH
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETS 433 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 433 (719)
.....++.....++. .+...+ .+......|..+|-+.|+.++|..+++++.+. +.|+...|.+.-.|+.. +.++|
T Consensus 93 ~~~~~~~~~ve~~~~-~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICD-KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHH-HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 122222211222222 333322 33345566777777888888888888777665 56777777777777777 77788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 047480 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPY 512 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 512 (719)
++++.+.... +....++..+.++|.++.... |+ ...+-.+....... ...
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhh------------hcc
Confidence 7777776653 445556777777777776532 22 22222221111111 111
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 513 DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
.--..+|--+-.-|...++++++..+++.+++.+|+|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1223344444555667777888888888888888877777666666664
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00032 Score=77.97 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=118.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHH
Q 047480 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVT 454 (719)
Q Consensus 377 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 454 (719)
+..++..+-.|.+.....|.+++|..+++...+. |.+...+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 4456778888999999999999999999998887 566778899999999999999999999999984 67765 5566
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALL 523 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll 523 (719)
+..++.+.|.+++|..+|+++...+ .-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6677889999999999999999732 233788899999999999999999999987 2334445555544
No 128
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=0.00019 Score=72.35 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=138.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG-LGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGG 463 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 463 (719)
+-..+.+.+..++|..+..++... +.+..+|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 334455677888888888887664 456677887777777777 679999999999985 4443 35554444455556
Q ss_pred c--HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----
Q 047480 464 L--VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH---RNA---- 532 (719)
Q Consensus 464 ~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~---- 532 (719)
. .+++..+++.+++.. +-+...|+....++.+.|++++|++.++++ ...| |..+|+.......+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 5 367888888888533 234778888888999999999999999998 3333 677888776665544 222
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHhhc----CChHHHHHHHHHHHh
Q 047480 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAET----YRWEEARQVRKLMDD 578 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 578 (719)
+.......++++.+|++..+|..+..++... ++..+|.+...+..+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677788899999999999999999999773 445667777666544
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.016 Score=59.81 Aligned_cols=177 Identities=12% Similarity=0.088 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 398 DTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 398 ~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
+.....++++... ..-..+|-..+..-.+..-...|..+|.+..+.+..+.. ...++++.- -..++.+-|.++|+.
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy-~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY-YCSKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HhcCChhHHHHHHHH
Confidence 3344444444332 123346888888888888899999999999999888844 466666654 456889999999998
Q ss_pred HH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 475 ML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP---YDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 475 m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
=. ++| -+..-..+.++-+..-++-..|..+|++.- ..|| ..+|..+|.--..-|+...+.++-++.....|.
T Consensus 427 GLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 427 GLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76 543 445566788899999999999999999872 3343 468999999999999999999998888776662
Q ss_pred C----chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 549 H----GAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 549 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
+ ...-..+.+.|.=.+.+..-..-++.|-
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~ 537 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFLG 537 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhhh
Confidence 2 1234456677777777666555555553
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=3.5e-06 Score=53.86 Aligned_cols=35 Identities=43% Similarity=0.669 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCCh
Q 047480 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDA 210 (719)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 210 (719)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5.8e-06 Score=52.85 Aligned_cols=35 Identities=34% Similarity=0.642 Sum_probs=31.0
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=5.4e-05 Score=66.44 Aligned_cols=97 Identities=27% Similarity=0.301 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455666777788888888888888776 3334 55677777777888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 047480 562 ETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~~ 580 (719)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8899999988888877643
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.0002 Score=73.49 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=103.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
-..+|+..+...+.++.|.++|+++.+.. |+ ....|+..+...++-.+|.+++++. ...| +...+......|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34566777788899999999999998543 54 4455888888889999999999887 3334 55566655666889
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.++.+.|+.+++++.++.|++..+|..|+.+|...|++++|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999885
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.02 E-value=0.039 Score=60.55 Aligned_cols=486 Identities=13% Similarity=0.091 Sum_probs=245.2
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHH
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLY 96 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 96 (719)
....|.+..+.+++..+ ...+...+.++..... |+.++|..+++.... .|..+...+-..|.+.++.++|..+|
T Consensus 24 qfkkal~~~~kllkk~P--n~~~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHP--NALYAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45566666666666643 3445555555544337 899999988887643 46678888999999999999999999
Q ss_pred HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hhHHHHH
Q 047480 97 TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY----------INNAHKV 166 (719)
Q Consensus 97 ~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~----------~~~A~~~ 166 (719)
++..+.. |+..-...+..++.+.+++.+-.++--++.+ .++.+.+.+=++++.+...-. +.-|.+.
T Consensus 101 e~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 101 ERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998877 8888888888999988887665555444444 234555655556666554321 1234445
Q ss_pred HccCCCCC-----hhhHHHHHHHHHcCCCcchHHHHHHH-HHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 047480 167 FEGSLARD-----LVSYNTLINGYAQVKEPCPALWLFRK-MQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240 (719)
Q Consensus 167 f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 240 (719)
++.+.+.+ ..-...-...+...|++++|++++.. ..+.-...+...-+--+..+...+.+.+..++-..+...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k- 255 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK- 255 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh-
Confidence 55444332 11111112233445667777777632 222212222222223333344444444444444444443
Q ss_pred CCCCC--------------------------------------------chHHHHHHH---HHHHhcCChHHHH-HHHHH
Q 047480 241 GCVGS--------------------------------------------NMLLKTAVI---NMYAKCGLMNMAE-RVFST 272 (719)
Q Consensus 241 ~~~~~--------------------------------------------~~~~~~~li---~~y~~~g~~~~a~-~~~~~ 272 (719)
+... ....+-+-+ ..+-.-|+.+++. .++++
T Consensus 256 -~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 256 -GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred -CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 1110 000011111 1111223333322 22233
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhh--------HHHHHHHHHhcCC-----hhHHHHHHHHhH-
Q 047480 273 MGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ-RDLVS--------WTAMISGYSQVGG-----FSQALELFGKME- 337 (719)
Q Consensus 273 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~--------~~~li~~~~~~g~-----~~~A~~~~~~m~- 337 (719)
.|..|- |..=+..|..+=..+.-..+.+.... .+..+ +...+..-...|. .+....++++..
T Consensus 335 fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 335 FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 332221 11111111111122222333333221 11111 1111211122221 233344443332
Q ss_pred --h------cCCCCChhH---------HHHHHHHHHccCChH---HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 047480 338 --S------LGIHPDEVT---------MVAVLRACVGLGALD---FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397 (719)
Q Consensus 338 --~------~g~~p~~~t---------~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 397 (719)
+ .++-|+..+ .+.++..|-+.++.. +|.-+++..+... +.|..+--.||..|.-.|-+
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~ 489 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAF 489 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCC
Confidence 1 233445443 335566777777765 3444444222222 35556667889999999999
Q ss_pred HHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHH---H
Q 047480 398 DTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQ---F 471 (719)
Q Consensus 398 ~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~---~ 471 (719)
..|.++|..+.-. ..|...|- +..-+...|++..+...+.....- ..-+. .|-..+..||. .|.+.+..+ +
T Consensus 490 p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~f 566 (932)
T KOG2053|consen 490 PDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAF 566 (932)
T ss_pred hhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHH
Confidence 9999999988653 23333332 234455567777777777665542 11111 12233333443 344444333 2
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHH
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA--NSVIWRAL 522 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p--~~~~~~~l 522 (719)
=+++....-.....+-+..++.+...++.++-...+..|..+| |.+-|.+|
T Consensus 567 r~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 567 RDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhcccccc
Confidence 2333311111223445667788889999999999998886444 34455444
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.0022 Score=65.43 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV-LCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLL 494 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 494 (719)
+--..-.+...|++++|+..++.++.. .||.+.|..+ ...+...++.++|.+.++.++. ..|+ ....-.+.++|
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 333344455678888888888888774 6766655544 4567788889999999988886 3466 55566677888
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 495 ARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.+.|++.+|+..+++.. .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|...
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHH
Confidence 99999999998888762 334778899999999998887766543 45567788999999998
Q ss_pred HHHHHhCC
Q 047480 573 RKLMDDSG 580 (719)
Q Consensus 573 ~~~m~~~~ 580 (719)
....+++.
T Consensus 448 l~~A~~~~ 455 (484)
T COG4783 448 LMRASQQV 455 (484)
T ss_pred HHHHHHhc
Confidence 88887764
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.00079 Score=68.49 Aligned_cols=179 Identities=13% Similarity=0.046 Sum_probs=128.0
Q ss_pred ChHHHHHHHhcCCCC----CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 047480 396 SIDTALSVFYKIPKN----LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
++.+++..-+.++.. .++.......+.+.........+-.++.+-.+. .-...-|..-+ .....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 344555555555543 345555556665543333222332222222221 11223344444 35567999999999
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
++.++.. .+-|........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+..+.+...-+|++
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 9998853 2334666777789999999999999999998 56676 6778888889999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 550 GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..|..|+.+|..+|+..+|...+.++..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999988887754
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.2e-05 Score=50.93 Aligned_cols=34 Identities=32% Similarity=0.641 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047480 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0055 Score=57.50 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 499 RLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 499 ~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
.+.+|.-+|++|. ..|+..+.+-...+|...|++++|+.+++.++..+|++|.+...++-.--..|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 3445555555552 334444555555555555555555555555555555555555555555455555433
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.7e-05 Score=50.24 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=25.8
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKP 447 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 447 (719)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777776
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00039 Score=71.45 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACS 460 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 460 (719)
....+|+..+...++++.|..+|+++.+ .++..+..++..+...++..+|++++++..+. .| +...+..-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~--~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRE--RDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHh--cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445677777788999999999999988 55555666888888889999999999999864 44 4445555556688
Q ss_pred ccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 514 (719)
+.++.+.|.++.+++.+ ..|+ -.+|..|+.+|.+.|++++|+..++.+|+.|
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999999997 3466 6699999999999999999999999998554
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00041 Score=60.80 Aligned_cols=113 Identities=8% Similarity=0.036 Sum_probs=83.7
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047480 436 VFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD 513 (719)
Q Consensus 436 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 513 (719)
+|++..+ ..|+. .....+...+...|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 35544 345566667778888888888888887643 335777788888888889999988888876 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 514 A-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
| +...|..+...+...|+.+.|...+++++++.|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4567777777788889999999999999999998754
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0081 Score=56.41 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=97.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cC
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH----GG 463 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 463 (719)
...|...|+.++|.+....... -+....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|.+++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~--lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN--LEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 3456777777777777776332 2222222 23344556677788888888762 355566666665543 34
Q ss_pred cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 047480 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNA-KIGEIAGQ 540 (719)
Q Consensus 464 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~ 540 (719)
.+.+|.-+|++|.+. ..|+..+.+.+..+....|++++|..++++. ....++.+...++..-...|.. +--.+...
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 577788888888732 4577777777777777888888888888776 2223555555555555555543 44555677
Q ss_pred HHhccCCCCc
Q 047480 541 KLLDLEPDHG 550 (719)
Q Consensus 541 ~~~~~~p~~~ 550 (719)
++....|..+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 7777777654
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0035 Score=58.31 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=109.0
Q ss_pred HHHhcCChHHHHHHHhcCCCCC-CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKNL-KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
+..-+|+.+.|...++++.... .+...--.-..-+-..|++++|+++++...+.. +.|.+++..=+...-..|..-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 3445677777777776665531 111111111122445788888999988888764 44556776666666666776777
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhc--CChhHHHHHHHHHh
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAA-CRLH--RNAKIGEIAGQKLL 543 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~--g~~~~a~~~~~~~~ 543 (719)
++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -..| ++..+..+... |... .|.+.+.+++++++
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777666642 5678899999999999999999999888887 3455 44455555555 3333 37889999999999
Q ss_pred ccCCCCchhHH
Q 047480 544 DLEPDHGAHYV 554 (719)
Q Consensus 544 ~~~p~~~~~~~ 554 (719)
++.|.+...+.
T Consensus 219 kl~~~~~ral~ 229 (289)
T KOG3060|consen 219 KLNPKNLRALF 229 (289)
T ss_pred HhChHhHHHHH
Confidence 99996544433
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.81 E-value=0.0045 Score=69.79 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH-HHHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT-MVAVLRA 354 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a 354 (719)
+.|+.+.|.+...|+.. ++++|..++.+. +..|...+++.++.+++.++... .|+.+. |..+++.
T Consensus 147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~k 212 (906)
T PRK14720 147 RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERK 212 (906)
T ss_pred cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHH
Confidence 44566777777777777 777777776653 23366677888888888888765 333332 2222222
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHH
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLA 425 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 425 (719)
. ....+...-+.++-.|-+.|-+.++++++..+|..+.+. +.|.....-++..|.
T Consensus 213 i----------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 V----------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred H----------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1 111223333444555667777888888888888887765 556666677777665
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.0003 Score=56.76 Aligned_cols=93 Identities=22% Similarity=0.165 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
+..+...+.+.|++++|.+.+++. ...| +...|..+...+...++.+.|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999888876 3334 34667777777888899999999999999999988888899999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 047480 565 RWEEARQVRKLMDDS 579 (719)
Q Consensus 565 ~~~~A~~~~~~m~~~ 579 (719)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887653
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0014 Score=58.12 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh--hHHHHHHHHHHhcCCH
Q 047480 427 HGLGETSIAVFREMELMGLKPDG----VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM--EHYGCMVDLLARDGRL 500 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~ 500 (719)
.++...+...++.+.+. .|+. .....+...+...|++++|...|+........|+. ...-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555555555543 2222 12222334455555666666666555543312211 1222344555555555
Q ss_pred HHHHHHHHhC
Q 047480 501 DEAYGLIQSM 510 (719)
Q Consensus 501 ~eA~~~~~~~ 510 (719)
++|+..++..
T Consensus 102 d~Al~~L~~~ 111 (145)
T PF09976_consen 102 DEALATLQQI 111 (145)
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=3.8e-05 Score=47.39 Aligned_cols=31 Identities=39% Similarity=0.649 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHcCCCcchHHHHHHHHHHCCC
Q 047480 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCI 206 (719)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 206 (719)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0031 Score=58.60 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=121.5
Q ss_pred cCChHHHHHHHhcCCCC------CCChh-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCcH
Q 047480 394 CGSIDTALSVFYKIPKN------LKTVS-LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL-CACSHGGLV 465 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 465 (719)
..+.++..+++..+... .++.. .|..++-+....|+.+.|...++++... + |++.-...+= .-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 34566777777665432 12222 2444455566677888888888887765 2 5543221111 114456788
Q ss_pred HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
++|.++++.++... +.|..+|---+.+.-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 88888888887443 344566666666666677766777666554 345578888888888888888888888888888
Q ss_pred ccCCCCchhHHHHHHHHhhcC---ChHHHHHHHHHHHhCCC
Q 047480 544 DLEPDHGAHYVLLSNMLAETY---RWEEARQVRKLMDDSGI 581 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 581 (719)
-..|.++..+..++..+.-.| +.+-|++++....+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 888888888888888777666 34457777777666443
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.8e-05 Score=46.54 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=24.3
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=6.1e-05 Score=59.66 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 497 DGRLDEAYGLIQSM-PYDA---NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 497 ~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555565555554 1112 334444455556666666666666666 555565555666667777777777777777
Q ss_pred HHH
Q 047480 573 RKL 575 (719)
Q Consensus 573 ~~~ 575 (719)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 151
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.13 Score=54.95 Aligned_cols=292 Identities=14% Similarity=0.177 Sum_probs=140.1
Q ss_pred cCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCcHHHHHH
Q 047480 157 FGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD----AFTFVAMFSACTELNDPRIGKQF 232 (719)
Q Consensus 157 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i 232 (719)
.|++++|++++-.+..+|.. |..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888877777776642 4555566666655555432 111111 12344444444444444444444
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 047480 233 HAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVS 312 (719)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (719)
+..--.. ...+..|.+..++++.+.+.+ .++.+....-.+.+++...|.-++|.+.|-+-..|..
T Consensus 819 Y~~~~~~-----------e~~~ecly~le~f~~LE~la~--~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-- 883 (1189)
T KOG2041|consen 819 YSYCGDT-----------ENQIECLYRLELFGELEVLAR--TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-- 883 (1189)
T ss_pred HHhccch-----------HhHHHHHHHHHhhhhHHHHHH--hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH--
Confidence 4333221 223444444444444444443 3455566666777777777777777776665544422
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
-+..|...+++.+|.++-++.. -|...|+ +. ..+.+++ .+.. ..--|.++-
T Consensus 884 ---Av~tCv~LnQW~~avelaq~~~----l~qv~tl---ia--------k~aaqll----~~~~-------~~eaIe~~R 934 (1189)
T KOG2041|consen 884 ---AVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IA--------KQAAQLL----ADAN-------HMEAIEKDR 934 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HH--------HHHHHHH----hhcc-------hHHHHHHhh
Confidence 2344566666777766655432 2222222 11 1111111 1111 012456777
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHH----hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLA----QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
+.|+.-+|-+++.+|.+. ...-+.|-.+-..|. -..+..+++.-.++....|...+... +...|...+
T Consensus 935 ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~ 1007 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAE 1007 (1189)
T ss_pred hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhh
Confidence 888877777777777653 111112222211111 11223334444444444443322221 112233333
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
+-++.+..-. -....|+-.|..--...|..+.|++.--.+
T Consensus 1008 ~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L 1047 (1189)
T KOG2041|consen 1008 QSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALIL 1047 (1189)
T ss_pred HHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhh
Confidence 3333332221 123556666666677788888887764333
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.65 E-value=0.00012 Score=55.35 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY-RWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 578 (719)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888889999999999999999999999999999999999999999 79999999988765
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.00065 Score=70.16 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=41.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 494 LARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
+...|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555444443 2222 233444444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 047480 572 VRKLMDD 578 (719)
Q Consensus 572 ~~~~m~~ 578 (719)
.++...+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555443
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00034 Score=66.70 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VIWRALLAACRLHRNAKI 534 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 534 (719)
-..+.+++.+|...|.+++. +.|+ ...|..=..+|.+.|.++.|++=.+.. .+.|.. -+|..|.-+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35567777777777777776 3444 445555567777777777777666654 455543 467777777777777777
Q ss_pred HHHHHHHHhccCCCCchh
Q 047480 535 GEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~ 552 (719)
|++.|+++++++|++...
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 777777777777776533
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.00075 Score=57.50 Aligned_cols=93 Identities=15% Similarity=0.002 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSN 558 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 558 (719)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334455555555666665555554 11222 1233444455555666666666666666655553 334556666
Q ss_pred HHhhcCChHHHHHHHHHHHhC
Q 047480 559 MLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 559 ~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.59 E-value=0.0025 Score=56.58 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=90.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ---MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANS----VIWRAL 522 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~----~~~~~l 522 (719)
.|..++.+. ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+... ..||. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344445455 4788899999999998432 122 2334446688899999999999999873 22443 345556
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
...+...|++++|+..++.. .-.+..+..+..++++|.+.|++++|+..++..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67788999999999998763 334445678889999999999999999998864
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.21 Score=55.10 Aligned_cols=495 Identities=12% Similarity=0.045 Sum_probs=258.4
Q ss_pred CChHHHHHHhccCCC--CCccHHHHHHHHH--HcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 047480 56 NGLFRSRILFSQIDN--PNIFIWNTLMRGY--SRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI 131 (719)
Q Consensus 56 g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 131 (719)
+++..|....++... ||.. |...+.++ .+.|+.++|..+++.....+. .|..|+..+-..|...+..+++..+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 566666666666533 5543 44555554 578999999988888776653 5788999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChh----HHHHHHccCCCCChhhHHHHHHHHHcC-CCcc---------hHHHH
Q 047480 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYIN----NAHKVFEGSLARDLVSYNTLINGYAQV-KEPC---------PALWL 197 (719)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~---------~A~~~ 197 (719)
++++.... |+......+..+|.+.+++. .|.+++...+++--..|+. ++.+.+. ...+ -|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 99998764 66778888888888888764 4778888777665555654 4444432 2222 24445
Q ss_pred HHHHHHCC-CCCChhhHHHHHHHHhccCCcHHHHHHHH-HHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-C
Q 047480 198 FRKMQDSC-IQPDAFTFVAMFSACTELNDPRIGKQFHA-VVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-G 274 (719)
Q Consensus 198 ~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~ 274 (719)
++.+.+.+ -.-+..-...-+......|..++|..++. ..... -.+.+...-+--++.+.+.+++.+..++..+. .
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 55555443 11122222222334456788899988883 33333 24455666678889999999998877776666 1
Q ss_pred CCCchHHHHHHHHHHHh----------------cCCHHHHHHHHhhcCC-CChhhHHHHHHHHH---hcCChhHHHHHHH
Q 047480 275 MSKSTAAWSSMISGYTR----------------EGKIERARQLFDQMDQ-RDLVSWTAMISGYS---QVGGFSQALELFG 334 (719)
Q Consensus 275 ~~~~~~~~~~li~~y~~----------------~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~---~~g~~~~A~~~~~ 334 (719)
-.+|. |...++.+.+ .+.++...+...+... +.--.|-+-+..+. .-|+.++++-.|-
T Consensus 255 k~~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 255 KGNDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred hCCcc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 12222 3333332221 2222222222222111 11122333333333 3466666554443
Q ss_pred HhHhcCCCC----ChhH---------HHHHHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh---
Q 047480 335 KMESLGIHP----DEVT---------MVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI--- 397 (719)
Q Consensus 335 ~m~~~g~~p----~~~t---------~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~--- 397 (719)
+-. |-+| |... ...++..+.... +.........+ ....+..-.-+|.+
T Consensus 333 ~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~-------------h~c~l~~~rl~G~~~~l 397 (932)
T KOG2053|consen 333 KKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ-------------HLCVLLLLRLLGLYEKL 397 (932)
T ss_pred HHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH-------------HHHHHHHHHHhhccccC
Confidence 221 1111 1111 122222222111 11111111110 01111111111210
Q ss_pred --HHHHHHH----hcCCC------C-CCCh---------hcHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCHHHH
Q 047480 398 --DTALSVF----YKIPK------N-LKTV---------SLFNSIISGLAQHGLGE---TSIAVFREMELMGLKPDGVTF 452 (719)
Q Consensus 398 --~~A~~~~----~~~~~------~-~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~ 452 (719)
+.-..++ -.... . -|+. -+-|.|+..+-+.++.. +|+-+++.-... -+-|..+=
T Consensus 398 ~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~K 476 (932)
T KOG2053|consen 398 PADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTK 476 (932)
T ss_pred ChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHH
Confidence 0111111 11100 0 0111 13466777777777655 344444444432 12344466
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHR 530 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g 530 (719)
..+|..|+-.|-...|.+.|..+--..|..|..-|- +...+...|++..+...++..- ...+..--.-+|.-..++|
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g 555 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRG 555 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcC
Confidence 677888888888888888888887555666644332 3355556677776666665531 0101111111222233556
Q ss_pred ChhHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 531 NAKIGEIAGQKLLDLEPD----HGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+....++..---.+.-. -..+-..........++.++-...+..|+
T Consensus 556 ~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 556 AYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 665554432211112111 11223356667778888888888888877
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00028 Score=52.59 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=49.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++.+.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3457788999999999999999999999999999999999999999999999887643
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.48 E-value=0.16 Score=51.74 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 504 YGLIQSMPYDA----NSVIWRALLAA--CRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 504 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
..++++.++.| +...-|.|.+| ...+|++.++.-...-+.++.| ++.+|..++-.+....+++||..++..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44555555444 34466777777 5788999999999999999999 78999999999999999999999998754
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0027 Score=63.16 Aligned_cols=161 Identities=11% Similarity=0.027 Sum_probs=112.2
Q ss_pred hcHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHcCCccChhHH----
Q 047480 415 SLFNSI-ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC--ACSHGGLVEEGKQFFESMLNYGIKPQMEHY---- 487 (719)
Q Consensus 415 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---- 487 (719)
.+|..+ ..++...|++++|...--...+. .++. .+..+++ ++-..++.+.+...|++.+.. .|+-..-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHh
Confidence 344444 23566778888887766555543 2211 2222222 234567788888888877653 3442211
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 488 ---------GCMVDLLARDGRLDEAYGLIQSM-PYDA-----NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 488 ---------~~li~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
.-=.+-..+.|++.+|.+.+.+. .+.| +...|........+.|+.++|+.-.+++++++|.-...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 11123456889999999999886 4444 44556666666788999999999999999999998889
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|..-++.+...++|++|.+-+++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999987643
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.44 E-value=0.0021 Score=54.70 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=60.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCC-cc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGI-KP-QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAA 525 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~ 525 (719)
..+...+...|++++|.+.|..+....- .+ ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444455556666666666666653210 01 1234455666777777777777777665 22232 3455666666
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
+...|+.+.|...++++++..|+++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 7777788888888888888888765433
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0012 Score=63.22 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=80.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCC
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGR 499 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 499 (719)
.-+.+.+++++|+..|.+.++. .| |.+-|..=..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 3467889999999999999984 55 556777778899999999999998888876 4455 7789999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047480 500 LDEAYGLIQSM-PYDANSVIWRALLA 524 (719)
Q Consensus 500 ~~eA~~~~~~~-~~~p~~~~~~~ll~ 524 (719)
+++|++.|++. .+.|+..+|..=|.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999887 67887766655443
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.0036 Score=67.60 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..+.++.-.....|+.++|...++++++++|+ ..+|..++.+|...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444433334445555555555555555552 445555555555555555555555555443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0032 Score=57.74 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=89.7
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD--GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGC 489 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 489 (719)
.....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+.. +-+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3445677777788888999999999988886543332 2467777778888899999999888888532 223556667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
+..+|...|+...+..-++.. ...+++|...++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766655433321 123677888999999999976 5455555544443
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0023 Score=58.66 Aligned_cols=81 Identities=12% Similarity=0.006 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
..+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666666777777777777665 11221 34677777778888888888888888888888888888888888
Q ss_pred HhhcCC
Q 047480 560 LAETYR 565 (719)
Q Consensus 560 ~~~~g~ 565 (719)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 877776
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.34 E-value=0.2 Score=49.89 Aligned_cols=274 Identities=16% Similarity=0.146 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHH--HHHhcCChhHHHHHHHHhHhcCCCCCh--hHHHHHHHHHHccCChHHH
Q 047480 292 EGKIERARQLFDQMD---QRDLVSWTAMIS--GYSQVGGFSQALELFGKMESLGIHPDE--VTMVAVLRACVGLGALDFG 364 (719)
Q Consensus 292 ~g~~~~A~~~f~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a 364 (719)
.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.. .-+..+.-.--+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555444332 123333333332 223457777777777777642 221 2233344444567777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChh--cHHHHHHHHH---hCCChhHHHHH
Q 047480 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVS--LFNSIISGLA---QHGLGETSIAV 436 (719)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~--~~~~li~~~~---~~g~~~~A~~~ 436 (719)
+++-+....+. +.-...+.++++..+..|+++.|+++.+.-... .+++. .--.|+.+-+ -.-+...|...
T Consensus 174 r~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 77766333332 233566778888888888888888888764432 24433 2223333222 12345556655
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 047480 437 FREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----P 511 (719)
Q Consensus 437 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~ 511 (719)
-.+..+ +.||-+ .-..-..++.+.|++.++-.+++.+-+.. |.+..+.. -.+.|.|+. +++-+++. .
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCc--HHHHHHHHHHHHh
Confidence 555444 678765 44455668899999999999999998754 54444332 234455643 32222222 2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhC
Q 047480 512 YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET-YRWEEARQVRKLMDDS 579 (719)
Q Consensus 512 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 579 (719)
++|| ..+..++..+....|++..|..-.+.+....|.. +.|..|+++-... |+-.+++..+-+....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4554 4566667777888999999999999999999975 6888999987655 9988888887776654
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0038 Score=64.52 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=61.2
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
+...|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344566666666666666422 122455556666666666666666666665 3334 3445666666667777777777
Q ss_pred HHHHHHhccCCCCchhHHHHHHHH
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
..++++++++|+++.....+..+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777766655554443
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0023 Score=58.47 Aligned_cols=93 Identities=12% Similarity=-0.112 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788888999998888876 22222 3478888888999999999999999999999998888888888
Q ss_pred HHh-------hcCChHHHHHHHHHH
Q 047480 559 MLA-------ETYRWEEARQVRKLM 576 (719)
Q Consensus 559 ~~~-------~~g~~~~A~~~~~~m 576 (719)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666554
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.0021 Score=56.33 Aligned_cols=89 Identities=20% Similarity=0.162 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 047480 490 MVDLLARDGRLDEAYGLIQSMP-YDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (719)
..--+...|++++|..+|+-+- ..| |..-|..|...|...++++.|...+..+..++++||..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999998762 233 56678888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047480 568 EARQVRKLMDD 578 (719)
Q Consensus 568 ~A~~~~~~m~~ 578 (719)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0041 Score=59.90 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=86.5
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcC--ChhHHHHHHHHHhccCCCCchhHHH
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAAC-RLHR--NAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++ .+.| ...++..++++++.++|++..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345889999999999999999999999887 3444 556677766663 3333 5678899999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCC
Q 047480 556 LSNMLAETYRWEEARQVRKLMDDSGIQKPP 585 (719)
Q Consensus 556 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 585 (719)
|+..+...|++.+|...++.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654333
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0072 Score=60.16 Aligned_cols=134 Identities=11% Similarity=0.112 Sum_probs=97.5
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA-CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357778888888888888888998887542 2223334333333 44457777799999998843 45667888899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 494 LARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+.+.|+.+.|..+|++. ..-|. ...|...+.--...|+.+...++.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 22233 35899999999999999999999999999888753
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.25 E-value=0.019 Score=60.25 Aligned_cols=241 Identities=12% Similarity=0.091 Sum_probs=130.5
Q ss_pred ccHHHHHHHHHHcCCCchHHHHHH---------HHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHH--HHHHHHhCCC
Q 047480 73 IFIWNTLMRGYSRSDSPQEALVLY---------TSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQI--HCHIIKFGLE 141 (719)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~ 141 (719)
.+.+.+-+-.|..+|.+.+|.++- +.+.... .+.-.++..=++|.+.++..--+-+ ++.+.+.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A---LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA---LEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH---HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334455555677778887776532 2222221 2344456666777776665544333 4556667766
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 047480 142 FDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT 221 (719)
Q Consensus 142 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 221 (719)
|+.... ...++-.|++.+|.++|.+ +|....|+++|.+|+--+ ..+-+.
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~ 681 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFL 681 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHh
Confidence 766543 3455667899999888854 567778888888776311 111222
Q ss_pred ccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 047480 222 ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQL 301 (719)
Q Consensus 222 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (719)
..|+.++-+.+...-..- ..++.--.+...++...|+.++|..+
T Consensus 682 ~~g~~~eKKmL~RKRA~W------------------------------------Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW------------------------------------ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred hcCChHHHHHHHHHHHHH------------------------------------hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 233333222222111110 00111111223444555666665544
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh
Q 047480 302 FDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI 381 (719)
Q Consensus 302 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (719)
. ..+|-.+-++++-+++-. .+..++..+..-+-+...+..|.++|. .+..
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~-k~gD------- 775 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFL-KMGD------- 775 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHH-Hhcc-------
Confidence 3 233444444444444322 233444444444556666777777777 3321
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChh
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS 415 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~ 415 (719)
..+++++....+++++|..+-++.++..+|+.
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 14678888899999999999999888645543
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.28 Score=49.53 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
+..|.-+...|+...|.++-.+..- |+..-|-..+.+++..+++++-.++... +-.++-|..++.+|...|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKV--PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3345556678888999998888877 8888999999999999999876664321 2234788888889999999
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAAC 526 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~ 526 (719)
..+|..+...+ .+.--+.+|.++|++.+|.+.--+.. |...+..+..-|
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99988887652 22456788899999999887755543 444444444433
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.24 E-value=0.0035 Score=50.21 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
|..+...+...|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 344455555555666666665555543 222 2334444444444555555555555444322 112233334444444
Q ss_pred hcCCHHHHHHHHH
Q 047480 496 RDGRLDEAYGLIQ 508 (719)
Q Consensus 496 ~~g~~~eA~~~~~ 508 (719)
..|++++|...++
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 4444444444443
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.0005 Score=51.78 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=45.0
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688899999999999999999889999999999999999999988887764
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.00093 Score=51.12 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999999988654
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.19 E-value=0.24 Score=49.41 Aligned_cols=255 Identities=12% Similarity=0.118 Sum_probs=168.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH--HccCChHHHHHHHHHHHHHcCCCCChhH--HHH
Q 047480 313 WTAMISGYS--QVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC--VGLGALDFGKRLHQQYIENVVFGRNIFL--TTA 386 (719)
Q Consensus 313 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 386 (719)
|.+|-.++. -.|+...|.++-.+..+. +..|...+..++.+- .-.|+.+.+++-|+ .|... |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe-AMl~d---PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE-AMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH-HHhcC---hHHHHHhHHH
Confidence 444444443 456777777666554432 345666666666554 45699999999999 55432 22221 122
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhc-
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGV--TFVTVLCACSH- 461 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 461 (719)
|.-.-.+.|+.+.|...-+..... +.-.-.|.+.+...+..|+++.|+++.+.-++.. +.+|.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333335678888888887776654 3344578999999999999999999998876543 556653 33344443221
Q ss_pred --cCcHHHHHHHHHHHHHcCCccChhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHH-H
Q 047480 462 --GGLVEEGKQFFESMLNYGIKPQMEH-YGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIG-E 536 (719)
Q Consensus 462 --~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a-~ 536 (719)
..+...|+..-.+..+ +.||..- --.-..+|.+.|++.++-.+++.+ +.+|.+.+|..... .+.|+.-.. .
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHHH
Confidence 2346666666655554 5677433 333457899999999999999998 67788888876553 355554322 2
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
+-.+++..+.|++......+..+-...|.+..|+.--+..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3456667799999999999998888888888776544443
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.00089 Score=49.84 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888999999888887 4456 455777788888889999999999999999999864
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.18 E-value=0.0003 Score=44.14 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.9
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.019 Score=52.35 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=70.6
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD--GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCM 490 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 490 (719)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++..... .|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 44567777777788888888888888876432222 236777777788888888888888887753 233 4455555
Q ss_pred HHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 491 VDLLA-------RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 491 i~~~~-------~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
...|. +.|++++|.. .+++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 66665 3333333332 2345667777888888864
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.14 E-value=0.016 Score=62.72 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=103.2
Q ss_pred CCChhcHHHHHHHHHh--CC---ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHHH
Q 047480 411 LKTVSLFNSIISGLAQ--HG---LGETSIAVFREMELMGLKPDGV-TFVTVLCACSHG--------GLVEEGKQFFESML 476 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 476 (719)
+.|...|...+.+... .+ ....|.++|++..+. .|+-. .+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3788899999988544 33 367899999999984 78764 555544433221 12334444444433
Q ss_pred Hc-CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 477 NY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 477 ~~-g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
.. ....+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 32 12334577888877777889999999999998 577888889999999999999999999999999999998753
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.10 E-value=0.42 Score=48.80 Aligned_cols=456 Identities=14% Similarity=0.107 Sum_probs=224.5
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCh------hchHHHHHHHhhccCCCCChHHHHHHhccCCCCC-ccHHHHHHHHH--H
Q 047480 14 LLESCKSLKQALQIHGQIVHSGLNH------HISSSQLISFFALSGCKNGLFRSRILFSQIDNPN-IFIWNTLMRGY--S 84 (719)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~ 84 (719)
+|+.-++..++..++..+.+.--.. ..+.+.++++|.. .+++.-........+.. ...|-.+..++ -
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3444447889999999887654322 3678899999997 78887777666654411 33466665554 3
Q ss_pred cCCCchHHHHHHHHhHhC--CCCCC----------CcccH-HHHHHHHhccCCcHHHHHHHHHHHHhCC----CCChhHH
Q 047480 85 RSDSPQEALVLYTSMLSK--GIVSP----------NNFTF-PFVLNSCARLSSFKSGCQIHCHIIKFGL----EFDLFIR 147 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~--g~~~p----------~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~ 147 (719)
+.+.+++|++.+..-... +..+| +.+.+ ...+.++...|++.+|+.++.+++..=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 578899998887766544 32211 11111 2334555678888888888777765543 3677777
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CC
Q 047480 148 NALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL--ND 225 (719)
Q Consensus 148 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--~~ 225 (719)
|.++-++++.=-++- -+.+...=..-|--||..|.+.=+. ++.-.=..+.|...-+..++....-. ..
T Consensus 171 d~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 171 DRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 777777765421111 1112221122344455555432111 11100011233333333333322111 11
Q ss_pred cHHHHHHHHHHHHhhCCCCCch-HHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH--
Q 047480 226 PRIGKQFHAVVYKNLGCVGSNM-LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLF-- 302 (719)
Q Consensus 226 ~~~a~~i~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f-- 302 (719)
+.--.+++..-.+. -+.|+- -+...|..-+.+ +.+++..+.+.. .-+
T Consensus 241 l~~~mq~l~~We~~--yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i--------------------------a~~~i 290 (549)
T PF07079_consen 241 LPPLMQILENWENF--YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI--------------------------ASSKI 290 (549)
T ss_pred ccHHHHHHHHHHhh--ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH--------------------------HHHhH
Confidence 11222222222222 122221 112222222222 222222211111 111
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH-------HHHHHHHH-ccCChHHH---HHHHHHH
Q 047480 303 DQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM-------VAVLRACV-GLGALDFG---KRLHQQY 371 (719)
Q Consensus 303 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~-~~~~~~~a---~~~~~~~ 371 (719)
+.+.+.=+.++..+++..++.++..+|-+.+.-+... .|+...- ..+-+..+ .-.+...- ..++. .
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe-~ 367 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWE-E 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHH-H
Confidence 0011122335556666666777766666666554432 2222100 00111111 11111111 12222 2
Q ss_pred HHHcCCCCChhHHHHH---HHHHHhcCC-hHHHHHHHhcCCCC-CCChhcHHHHHH----HHHhC---CChhHHHHHHHH
Q 047480 372 IENVVFGRNIFLTTAV---IDMYAKCGS-IDTALSVFYKIPKN-LKTVSLFNSIIS----GLAQH---GLGETSIAVFRE 439 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~l---i~~y~k~g~-~~~A~~~~~~~~~~-~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~ 439 (719)
+....+.. .....-| ..-+-+.|. -++|.++++.+..- +-|..+-|.... +|.+. ....+-+.+-+-
T Consensus 368 ~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22222111 1111112 122444454 77888888877654 345544444322 23321 123333444444
Q ss_pred HHHcCCCCCHH----HHHHHHHH--HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047480 440 MELMGLKPDGV----TFVTVLCA--CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYD 513 (719)
Q Consensus 440 m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~ 513 (719)
..+.|+.|-.+ .-+.|-.| +...|++.++.-+-..+.+ +.|++.+|..+.-.+....+++||.+++.++|
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--
Confidence 45678877443 33444433 4456888888776666655 78999999999999999999999999999986
Q ss_pred CCHHHHHH
Q 047480 514 ANSVIWRA 521 (719)
Q Consensus 514 p~~~~~~~ 521 (719)
|+..+|++
T Consensus 523 ~n~~~~ds 530 (549)
T PF07079_consen 523 PNERMRDS 530 (549)
T ss_pred CchhhHHH
Confidence 56666665
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.16 Score=50.69 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCcHHHHHHHHHHHHH--cCCccC--hh
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKP-----DGV-TFVTVLCACSHGGLVEEGKQFFESMLN--YGIKPQ--ME 485 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~--~~ 485 (719)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|++..|.+.++.... .++..+ -.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 35556677888899999999998887643221 221 233333355667888899999888772 344333 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 047480 486 HYGCMVDLLAR--DGRLDEAYGLIQSMP 511 (719)
Q Consensus 486 ~~~~li~~~~~--~g~~~eA~~~~~~~~ 511 (719)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666643 345777777777774
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0041 Score=61.65 Aligned_cols=259 Identities=12% Similarity=0.062 Sum_probs=151.7
Q ss_pred HHHhcCChhHHHHHHHHhHhcCCCCCh----hHHHHHHHHHHccCChHHHHHHHHHHHHHc---CCC-CChhHHHHHHHH
Q 047480 319 GYSQVGGFSQALELFGKMESLGIHPDE----VTMVAVLRACVGLGALDFGKRLHQQYIENV---VFG-RNIFLTTAVIDM 390 (719)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~li~~ 390 (719)
-+++.|+....+.+|+..++.|. -|. ..|+.+-++|..++++++|.++|...+.-. |-. ........|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35677777777777777777662 233 335555667777778888887776221100 000 000111122333
Q ss_pred HHhcCChHHHHHHHhcC-------CCCCCChhcHHHHHHHHHhCCC--------------------hhHHHHHHHHHHH-
Q 047480 391 YAKCGSIDTALSVFYKI-------PKNLKTVSLFNSIISGLAQHGL--------------------GETSIAVFREMEL- 442 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 442 (719)
+--.|.+++|...-.+- .........+-.+...|...|+ .+.|.+.|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554332211 1100112234444455544332 2334444443222
Q ss_pred ---cCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047480 443 ---MGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESML----NYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM--- 510 (719)
Q Consensus 443 ---~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~--- 510 (719)
.|-.. -...|..|.+.|.-.|+++.|+..++.-+ ++|-... ...++.+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 22110 11356666666777889999998887543 4443222 457788889999999999999988764
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 511 ----PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDL----E--PDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 511 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+.+ -...+.-+|..+|....+++.|+.++.+-+.+ + -....++..|+++|...|..+.|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 23456677888888888899999988776542 2 23356899999999999999999888776653
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.077 Score=47.15 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCHHH
Q 047480 445 LKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP------YDANSVI 518 (719)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~------~~p~~~~ 518 (719)
..|....-..|..+....|+..+|...|++...--+.-|....-.+..+....+++.+|...+++.. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 4566666667778888888888888888888754445667777777888888888888888888762 22333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
--.+...+.-.|..+.|+..|+.++...|+ +..-...+.++.++|+.++|..-+....+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 233445577789999999999999998886 56777788899999999988776655544
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.03 E-value=0.024 Score=49.55 Aligned_cols=91 Identities=7% Similarity=-0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHG 462 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 462 (719)
-++...+...|++++|.++|+.+... +.+..-|-.|..++-..|++++|+..|...... .|| ...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHc
Confidence 34455566778888888888876654 456677888888888888888888888888774 344 45666777778888
Q ss_pred CcHHHHHHHHHHHHH
Q 047480 463 GLVEEGKQFFESMLN 477 (719)
Q Consensus 463 g~~~~a~~~~~~m~~ 477 (719)
|+.+.|++.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887773
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.02 E-value=0.09 Score=52.57 Aligned_cols=123 Identities=11% Similarity=0.296 Sum_probs=63.7
Q ss_pred HHHHhc-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCC-----Chh-HHHH
Q 047480 287 SGYTRE-GKIERARQLFDQMDQ-----RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGIHP-----DEV-TMVA 350 (719)
Q Consensus 287 ~~y~~~-g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ 350 (719)
..|-+. |+++.|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 555555555554432 11 1234556677888888888888888876543221 111 2223
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHc-CCCCC--hhHHHHHHHHHHh--cCChHHHHHHHhcCCC
Q 047480 351 VLRACVGLGALDFGKRLHQQYIENV-VFGRN--IFLTTAVIDMYAK--CGSIDTALSVFYKIPK 409 (719)
Q Consensus 351 ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~~y~k--~g~~~~A~~~~~~~~~ 409 (719)
.+-.+...|+...|...++++.... ++..+ ..+...|+++|-. ...+++|..-|+.+..
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 3334455677777777777444332 23222 3445566666654 2346666666766665
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.07 Score=56.26 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047480 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
+-+.+.-+++|++.|-.|+.... ...|+-.|++.+|..+|. +.|.+ |..++||.....++.|.++..
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk----~~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK----RSGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH----HcCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 34455567888888888888654 455677888888888876 23322 334566666666666666654
Q ss_pred cC
Q 047480 406 KI 407 (719)
Q Consensus 406 ~~ 407 (719)
.-
T Consensus 683 ~g 684 (1081)
T KOG1538|consen 683 SG 684 (1081)
T ss_pred cC
Confidence 43
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0069 Score=55.45 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=76.7
Q ss_pred HHHHhcCCCCCCChhcHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 047480 401 LSVFYKIPKNLKTVSLFNSIISGLAQ-----HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG------------- 462 (719)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 462 (719)
...|+......+|-.+|..++..|.+ +|..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 34455543223677777777777764 366677777888999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCC
Q 047480 463 ---GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499 (719)
Q Consensus 463 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 499 (719)
.+.+-|++++++|..+|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999999999999999999999988775
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.92 E-value=0.022 Score=56.67 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH-HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA-CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..+.. ++.+...+..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56666666666666777777777776432 2233333333333 22345566677777743433 34667777888888
Q ss_pred HHhcCChHHHHHHHhcCCCCCCCh----hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKNLKTV----SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
+.+.|+.+.|+.+|++.....+.. ..|...+.-=.+.|+.+.+..+.+++.+. -|+...+..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f 146 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELF 146 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHH
Confidence 888888888888888876652222 36888887777788888888888777763 4443333333
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.91 E-value=0.015 Score=47.09 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHcCCccChhHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGL-KPDGVTFVTVLCACSHGG--------LVEEGKQFFESMLNYGIKPQMEHYG 488 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~ 488 (719)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566667999999999999999999 899999999999877643 3456788899999888999999999
Q ss_pred HHHHHHHh
Q 047480 489 CMVDLLAR 496 (719)
Q Consensus 489 ~li~~~~~ 496 (719)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887754
No 192
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.91 E-value=0.0015 Score=51.55 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHH
Q 047480 427 HGLGETSIAVFREMELMGL-KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~ 504 (719)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|+ ....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666665421 11233333455566666666666666655 21 1122 222223355566666666666
Q ss_pred HHHHh
Q 047480 505 GLIQS 509 (719)
Q Consensus 505 ~~~~~ 509 (719)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.90 E-value=0.0015 Score=49.17 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=33.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRAL 522 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l 522 (719)
..|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3566666666666666422 123555555666666666666666666665 234454444333
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.87 E-value=0.61 Score=47.07 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
+.+..|.-+...|+...|.++-.+..-||-.-|...+.+++..++|++-.++... +-.+.-|-.++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667788999999999998889999999999999999999887765432 2245788889999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
..+|..+.. . ..+..-+.+|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~-k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIP-K----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHH-h----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888887666 2 11266889999999999987765444
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.82 E-value=0.19 Score=48.73 Aligned_cols=170 Identities=9% Similarity=0.019 Sum_probs=103.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCC-ChhcH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLK-TVSLF---NSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSH 461 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~-~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 461 (719)
...+.+.|++++|.+.|+.+....| +...- -.++.+|.+.+++++|...|++..+. .|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3445567888888888888766522 22222 34456677888888888888888874 3433 344444444332
Q ss_pred --cC---------------cH---HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-
Q 047480 462 --GG---------------LV---EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR- 520 (719)
Q Consensus 462 --~g---------------~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~- 520 (719)
.+ +. .+|.+.|+.++ +-|-.+....+|...+..+. +...-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~---~~la~~e 178 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLK---DRLAKYE 178 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHH---HHHHHHH
Confidence 10 11 22333343333 33333333445544444332 111111
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 521 -ALLAACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 521 -~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+..-|.+.|.+.-|..-++.+++--|+.+ .+...+..+|.+.|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 222337788999999999999999888764 457788899999999999999887664
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.80 E-value=0.011 Score=61.32 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+++..|...|..++++++++.=...|+-||..||+.|+..+.+.|++..|.++...|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.70 E-value=0.019 Score=52.73 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCcccHHHHHHHHh-----ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHH
Q 047480 107 PNNFTFPFVLNSCA-----RLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTL 181 (719)
Q Consensus 107 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 181 (719)
.|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+ ++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------AE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------HH
Confidence 56667777777765 346777777788889999999999999999987754 3322 111111 11
Q ss_pred HHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc-HHHHHHHHHHHH
Q 047480 182 INGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP-RIGKQFHAVVYK 238 (719)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~ 238 (719)
---| -.+-+-|++++++|...|+.||..|+..+++.+++.+.. ...+++.-++.+
T Consensus 112 F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 224467899999999999999999999999999877653 334444444444
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.68 E-value=0.0038 Score=47.03 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHR-NAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 547 (719)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777788888888888887776 3344 4557777777788888 68888888888888877
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.079 Score=49.77 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCC-----ChhHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGR-----NIFLTTA 386 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 386 (719)
.-+.++..+.-.|.+.-.+.++++.++...+.++...+.+.+.-.+.|+.+.|...++ .+++..-.. +..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~-~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ-DVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHhhhhccchhHHHHhh
Confidence 3456666667777888888888888887656677778888888888999999988888 555533222 3333334
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVT 454 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 454 (719)
....|.-.+++..|...|.+++.. +.|++.-|.-.-+..-.|+..+|++..+.|.+. .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 444566678888888889888765 566677776666666778899999999999874 555544443
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.63 E-value=0.034 Score=57.76 Aligned_cols=121 Identities=13% Similarity=0.041 Sum_probs=76.6
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhc
Q 047480 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENV--VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSL 416 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~ 416 (719)
.+.+...+..+++.+....+++.+..++- ..... ....-..+..++|..|.+.|..+.+..++..=... -||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~-k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLY-KFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHH-HHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666666777766666666666555 22222 12222344457777777777777777777654333 567777
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (719)
+|.++..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666666554
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.61 E-value=0.008 Score=61.65 Aligned_cols=64 Identities=13% Similarity=-0.078 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH---YVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+...|+.+..++...|++++|+..++++++++|++..+ |..++.+|..+|+.++|.+.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666665532 56666666666666666666666555
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.60 E-value=0.028 Score=47.30 Aligned_cols=56 Identities=21% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 520 RALLAACRLHRNAKIGEIAGQKLLDLEPD---HGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
-.+.+.++..|++++|..++++..+..|+ +......++.++...|+.+||.+.+-.
T Consensus 42 i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 42 IQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555566666666666666555555 444455555566666666666655443
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.56 E-value=0.016 Score=56.66 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSN 558 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 558 (719)
|..-+..+.+.|++++|...|+.. ...|+. ..+--+...+...|+++.|...|+++++..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444445555555555544 112221 2333344445556666666666666665555532 33444555
Q ss_pred HHhhcCChHHHHHHHHHHHh
Q 047480 559 MLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 559 ~~~~~g~~~~A~~~~~~m~~ 578 (719)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=1.6 Score=47.57 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
-+.-+...|+..+|.++-.+..- ||-..|---+.+++..+++++-+++-+.+. .++-|.....+|.+.|+.+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 34445667888888888888877 888888888888888888877665544332 2566777888888999999
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
+|.+++-+... +.-.+.+|.+.|++.+|.++--+
T Consensus 762 EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 98888754321 11467888888888888776443
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.47 E-value=0.029 Score=45.56 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCC-CCCCcccHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCChhH
Q 047480 76 WNTLMRGYSRSDSPQEALVLYTSMLSKGI-VSPNNFTFPFVLNSCARLS--------SFKSGCQIHCHIIKFGLEFDLFI 146 (719)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 146 (719)
-...|..+...+++.....+|+.+++.|+ . |+..+|+.++.+.++.. .+.....+++.++..++.|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~l-Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITL-PSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34556667777999999999999999999 6 99999999999987543 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 047480 147 RNALIHFYSI 156 (719)
Q Consensus 147 ~~~Li~~y~~ 156 (719)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.39 E-value=0.0057 Score=41.12 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
.+|..+..++...|+.++|++.++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999999888877764
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.39 E-value=0.01 Score=45.19 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 491 VDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
-.+|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678888888888888887 4445 4556666777788889999999999999999998765443
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.34 E-value=0.61 Score=45.25 Aligned_cols=66 Identities=5% Similarity=-0.103 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCccc----HHHHHHHHhccCCcHHHHHHHHHHHHhCC
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT----FPFVLNSCARLSSFKSGCQIHCHIIKFGL 140 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 140 (719)
+...+-.....+.+.|++++|++.|+++.... |+... .-.+..++.+.++++.|...++..++.-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 33334445556677899999999999998866 44322 13455667788888888888888887753
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.21 Score=47.02 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCCh--------hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKNLKTV--------SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
+++|+..|.-..-+++-...|+.-......+ ..-+.++..+.-+|.+.-.+.++.+.++...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 3556666655555555555554432210222 23456666677778888888888888886545566677777
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH-----HHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV-----DLLARDGRLDEAYGLIQSMPY-DA-NSVIWRALLAACRL 528 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~ 528 (719)
.+.-.+.|+.+.|..+|+...+..-..+....+.++ ..|.-+.++.+|...+.+++. +| |++.-|.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777888899999988888776332233433333333 345556677777777777742 22 33333333223344
Q ss_pred cCChhHHHHHHHHHhccCCCCch
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.|+...|.+..+.+.+..|....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccch
Confidence 57777888888888887776443
No 210
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.28 E-value=0.11 Score=43.80 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCC--hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPD--EVTMVAVLRACVGLGALDFGKRLHQQYIENVVF-GRNIFLTTAVIDMYA 392 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~ 392 (719)
...++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++.+...+- +.+..+...+.-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778888888888888888776544 234555566667777777777777744433221 011122222223444
Q ss_pred hcCChHHHHHHHhcC
Q 047480 393 KCGSIDTALSVFYKI 407 (719)
Q Consensus 393 k~g~~~~A~~~~~~~ 407 (719)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666665555443
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.26 E-value=0.76 Score=41.09 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPDGVTFV 453 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~ 453 (719)
|++..--.|.......|+..+|...|++.... ..|....-.+..+....+++..|..+++.+.+.. -.|| +-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444445555555666666666666554433 3455555555566666667777777776666532 1222 333
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+...+...|...+|..-|+....+ -|+..........+.++|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455666777777777777777753 355555445566677777776665443
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.11 E-value=0.1 Score=46.26 Aligned_cols=60 Identities=25% Similarity=0.138 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455667778889999999999999999999999999999999999999999999999885
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.048 Score=54.83 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++..|...+.+.+++..|+....++++++|+|.-+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 455666677888999999999999999999999999999999999999999999999999874
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.08 E-value=0.58 Score=47.76 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCC-CCh----hcHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 386 AVIDMYAKCGSIDTALSVFYKIPKNL-KTV----SLFNSIISGLAQ---HGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 386 ~li~~y~k~g~~~~A~~~~~~~~~~~-~~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
.++-.|-...+++...++.+.+...+ .++ ..---..-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777888888887776641 111 111123334555 7888889998888666556777777776665
Q ss_pred HHhc---------cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHH----HHHHHH---Hh-C----CCC--C
Q 047480 458 ACSH---------GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD----EAYGLI---QS-M----PYD--A 514 (719)
Q Consensus 458 a~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~----eA~~~~---~~-~----~~~--p 514 (719)
.|-. ....++|...|.+.-+ +.|+..+--.++-++...|... +..++- .. . ... .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5431 2346777877776654 3455444334444455555322 222222 11 1 122 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
|--.+.+++.++.-.|+.+.|.+++++++.+.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44556788999999999999999999999998864
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=3 Score=45.66 Aligned_cols=322 Identities=8% Similarity=0.022 Sum_probs=159.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCC---cHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047480 77 NTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSS---FKSGCQIHCHIIKFGLEFDLFIRNALIHF 153 (719)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 153 (719)
..+|+-++..+.+..|+++-..+...-.+ +...|.....-+.+..+ .+.+..+-+++... . .+...|.....-
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 34677888888899999888777543222 14555555555554432 22222332222211 1 334456666666
Q ss_pred HHhcCChhHHHHHHccCCCC--------ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 047480 154 YSIFGYINNAHKVFEGSLAR--------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225 (719)
Q Consensus 154 y~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 225 (719)
-..+|+.+-|+++.+.=+.. +..-+..-+.-..+.|+.+-...++-.|... -+...|...+ .+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hh
Confidence 67789999999988754321 3334556666677788887777777666542 1112222111 12
Q ss_pred cHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-----CCCCchHHHHHHHHHHHhcCCHH----
Q 047480 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-----GMSKSTAAWSSMISGYTREGKIE---- 296 (719)
Q Consensus 226 ~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~---- 296 (719)
...|..++....+.. -...|-+.|-...+.+.+-.+..+. .+.+-........+.+.+.....
T Consensus 588 ~p~a~~lY~~~~r~~--------~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ--------DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred chhhhHHHHHHHHhh--------chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHH
Confidence 223333333333320 0011222233333322222211111 01111112222233333332211
Q ss_pred ------HHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHH
Q 047480 297 ------RARQLFDQMDQR-----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGK 365 (719)
Q Consensus 297 ------~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 365 (719)
.-.++++.+... .-.|.+--+.-+..-|+..+|.++-++.+ -||...|-.-+.+++..+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 111111111110 11234444555566677777776665554 566666666666777777666555
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 366 RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
++-+ + ...+.-|.-.+..+.+.|+.++|.+.+.++... .-...+|.+.|++.+|.++-
T Consensus 736 kfAk----s---kksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 736 KFAK----S---KKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHh----c---cCCCCCchhHHHHHHhcccHHHHhhhhhccCCh-------HHHHHHHHHhccHHHHHHHH
Confidence 5433 1 111334455666677777777777777776652 13556666666666666543
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.97 E-value=1.5 Score=41.61 Aligned_cols=196 Identities=20% Similarity=0.156 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPK---NLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
..........+...+.+..+...+..... .......+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566667777777777776666542 124455666666677777778888888887776433331 12222222
Q ss_pred -HHhccCcHHHHHHHHHHHHHcCCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 047480 458 -ACSHGGLVEEGKQFFESMLNYGIKP----QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN--SVIWRALLAACRLH 529 (719)
Q Consensus 458 -a~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~~ 529 (719)
.+...|+.+.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 67778888888888888754 223 2334444445566778888888888776 23333 56677777778888
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.+.+...+.++.+..|.....+..++..+...|.++++...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888875566777777777777788888887777654
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=3.1 Score=45.01 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHHH--HHhcCChhHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHH
Q 047480 518 IWRALLAA--CRLHRNAKIGEIAGQKLLDLE---PDHGAHYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 518 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
.|.-+|-+ -...|.++.|.+..-.+...+ |. ...|..|+-+-+....+---.+.|
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP-AEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HHHHHHHHHHHhhhhhhhhhHHHH
Confidence 34444444 344577777777655444321 21 356776666555444444333333
No 218
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=2.5 Score=42.88 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=25.0
Q ss_pred HHhCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 424 LAQHGLGETSIAVFREMELM---GLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+..+|+.--+...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 34455555555555555431 122333334444444455555555555544444
No 219
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.76 E-value=0.14 Score=50.18 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDAN----SVIWRA 521 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~----~~~~~~ 521 (719)
.|...+....+.|++++|...|+.+++. .|+ ...+-.+...|...|++++|...|+.+- ..|+ ...|-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4444444344557777777777777642 233 2355567777778888888887777761 1222 234444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+...+...|+.+.|...++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 45556778899999999999998888764
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.15 Score=49.47 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCccChhH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSH---GGLVEEGKQFFESMLNYGIKPQMEH 486 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~g~~p~~~~ 486 (719)
|.|...|-.|...|...|+++.|..-|.+..+. .|| ...+..+..++.. .....++..+|++++... .-++..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 456666777777777777777777777766652 222 2233333333222 223456666666666421 122444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALL 523 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll 523 (719)
...|...+...|++.+|...++.| ..-|....|..++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555566666666666666655 2233333444444
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.60 E-value=0.018 Score=44.55 Aligned_cols=61 Identities=18% Similarity=0.042 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDL----EPD---HGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555556666666666555542 111 234677888888888888888888877643
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.57 E-value=3.3 Score=42.48 Aligned_cols=445 Identities=14% Similarity=0.128 Sum_probs=223.4
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCc---cHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNI---FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFV 115 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~l 115 (719)
...|=.||.-|.. . |..+.-++++++|..|-. .+|.--+++-....+++....+|.+.+... .+...|..-
T Consensus 42 I~S~fqLiq~~~t--q-~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~---l~ldLW~lY 115 (660)
T COG5107 42 ILSYFQLIQYLET--Q-ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS---LNLDLWMLY 115 (660)
T ss_pred HHHHHHHHHHHhh--h-hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh---ccHhHHHHH
Confidence 4678889999988 7 999999999999987654 469888988888889999999999888765 344445554
Q ss_pred HHHHhccCCcH--H----HHHHHHHHHHh-CCCC-ChhHHHHHHHHHH---------hcCChhHHHHHHccCCC-C--C-
Q 047480 116 LNSCARLSSFK--S----GCQIHCHIIKF-GLEF-DLFIRNALIHFYS---------IFGYINNAHKVFEGSLA-R--D- 174 (719)
Q Consensus 116 l~~~~~~~~~~--~----a~~~~~~~~~~-g~~~-~~~~~~~Li~~y~---------~~g~~~~A~~~f~~~~~-~--~- 174 (719)
+.--.+....- + -.+.++.++.. +++| ....|+..+...- ...++|..++.+.++.. | |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 54433333211 1 12334444432 3433 3345665554432 12334556666665543 1 1
Q ss_pred ------hhhHHHHHHHHHc---CC----CcchHHHHHHHHH--HCCCCC----ChhhHHHHHHHHhccCCcHHHHHHHHH
Q 047480 175 ------LVSYNTLINGYAQ---VK----EPCPALWLFRKMQ--DSCIQP----DAFTFVAMFSACTELNDPRIGKQFHAV 235 (719)
Q Consensus 175 ------~~~~~~li~~~~~---~g----~~~~A~~~~~~m~--~~g~~p----d~~t~~~ll~a~~~~~~~~~a~~i~~~ 235 (719)
-..|..=+..... .| -+-.|.+.+++.. -.|++. +..|++-+-+. .+.. -....+.
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~----s~S~-WlNwIkw 270 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART----SDSN-WLNWIKW 270 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc----ccch-hhhHhhH
Confidence 1122211211111 11 2345566666653 234432 22333332110 0000 0000000
Q ss_pred HHHhhCCCCCch--------HHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 047480 236 VYKNLGCVGSNM--------LLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ 307 (719)
Q Consensus 236 ~~~~~~~~~~~~--------~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 307 (719)
-.+. ++...- .+++..+. -+.-...+|----..+...++-+.|.....+-.+
T Consensus 271 E~en--~l~L~~~~~~qRi~y~~~q~~~------------------y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~ 330 (660)
T COG5107 271 EMEN--GLKLGGRPHEQRIHYIHNQILD------------------YFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE 330 (660)
T ss_pred hhcC--CcccCCCcHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc
Confidence 0011 111000 11111111 1122223333333333444555555555444322
Q ss_pred CChhhHHH-HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH---HccCChHHHHHHHHHHHHHcCCCCChhH
Q 047480 308 RDLVSWTA-MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC---VGLGALDFGKRLHQQYIENVVFGRNIFL 383 (719)
Q Consensus 308 ~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 383 (719)
-.. +.+. +-..|-..++.+.....|+...+.= ..-|. .+.+= ..-|+.+.-.+++-.... .-..+
T Consensus 331 ~sp-sL~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~ys-~~~s~~~s~~D~N~e~~~Ell~kr~~-----k~t~v 399 (660)
T COG5107 331 MSP-SLTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKYS-MGESESASKVDNNFEYSKELLLKRIN-----KLTFV 399 (660)
T ss_pred CCC-chheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHHh-hhhhhhhccccCCccccHHHHHHHHh-----hhhhH
Confidence 111 1111 1122222333333333333322100 00000 00000 011223323332221221 23456
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF-VTVLCAC 459 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~ 459 (719)
+...++.-.+..-++.|+.+|-+..+. .+++..++++|.-++. |+..-|..+|+--... -||...| .-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 777777777777788888888776654 4677788888887764 6677788888765442 4555433 3455566
Q ss_pred hccCcHHHHHHHHHHHHHcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQ--MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLH 529 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~ 529 (719)
...++-+.|+.+|+..+.. +..+ ...|..+++-=..-|++..+..+=+++. .-|...+-....+-|...
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 6778888999999866621 2333 5688888888888999988887777662 334444444444445443
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=0.39 Score=40.25 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
....-+++....|+-+.-.+++..+.+-+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445667778888888888888888666567889999999999999999999999999999974
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.52 E-value=0.12 Score=43.01 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=69.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----hhHHHHHHHHhhcCC
Q 047480 492 DLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG----AHYVLLSNMLAETYR 565 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 565 (719)
-++...|++++|++.|.+. ..- .....||.-..+++-+|+.++|+.-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888765 222 3677888888888889999999998888888754433 257788888999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 047480 566 WEEARQVRKLMDDSGI 581 (719)
Q Consensus 566 ~~~A~~~~~~m~~~~~ 581 (719)
-+.|+.-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888877664
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.43 E-value=0.71 Score=43.48 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=86.5
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC----ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcc-
Q 047480 390 MYAKCGSIDTALSVFYKIPKNLK----TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHG- 462 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~- 462 (719)
.+...|++++|.+.|+.+....| -....-.++.++-+.|++++|...++++++. -|+. ..+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34556777777777766654311 1224455666777777788888777777764 3333 2222222222211
Q ss_pred ------------CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHHh
Q 047480 463 ------------GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRA--LLAACRL 528 (719)
Q Consensus 463 ------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~--ll~~~~~ 528 (719)
+...+|...|+ .++.-|=.+....+|...+..+. +...-.. +..-|.+
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_pred hCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 11222333333 33334444444445544444332 1111111 2334788
Q ss_pred cCChhHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGA---HYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 570 (719)
.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999998654 4667888999999888544
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=95.42 E-value=0.24 Score=51.21 Aligned_cols=63 Identities=17% Similarity=0.040 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.++...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444444444445556666666666666666666666666666666666666666665543
No 227
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=5.9 Score=43.72 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred HHHHHhcCChHHHHHHHHHc-CCCC---chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047480 254 INMYAKCGLMNMAERVFSTM-GMSK---STAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQA 329 (719)
Q Consensus 254 i~~y~~~g~~~~a~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (719)
++-+.+.+.+++|+...+.. |..+ -..++..+|+.+.-.|++++|....-.|...+..-|---+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566778889999888887 6666 4568889999999999999999999999888888887777777777665543
Q ss_pred HHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcC-------------------CCCChhHHHHHHHH
Q 047480 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVV-------------------FGRNIFLTTAVIDM 390 (719)
Q Consensus 330 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~li~~ 390 (719)
..+ +.....+.++..|-.++..+.. .+. ..+++ ++.... ..-+..+...|+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e-~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLE-LIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHH---HHHHH-HHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 322 1111111234445555555544 111 11111 111100 01222344568899
Q ss_pred HHhcCChHHHHHHHhcCCC
Q 047480 391 YAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~ 409 (719)
|...+++.+|..++-...+
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Confidence 9999999999998877765
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.28 E-value=0.15 Score=48.46 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCCCCChhcHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc---------
Q 047480 399 TALSVFYKIPKNLKTVSLFNSIISGLAQH-----GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL--------- 464 (719)
Q Consensus 399 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 464 (719)
..++.|..+....+|-.+|-+++..+..+ +..+=....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 34566777764448888899988888654 4566667778999999999999999999988766432
Q ss_pred -------HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 047480 465 -------VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL-DEAYGLIQSM 510 (719)
Q Consensus 465 -------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~eA~~~~~~~ 510 (719)
-+=+..++++|..+|+.||.++-..|+.+++|.|.. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 244788999999999999999999999999999864 3344444444
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.27 E-value=0.025 Score=43.73 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-------P-YDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|+.++|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555554444433 1 0111 23444555556666666666666665543
No 230
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.21 E-value=0.13 Score=51.38 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCCcc----cHHHHHHHHhccCCcHHHHHHHH
Q 047480 82 GYSRSDSPQEALVLYTSMLSKGIVSPNNF----TFPFVLNSCARLSSFKSGCQIHC 133 (719)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 133 (719)
-+++.|+.+..+.+|+..++.|. -|.. .|+.+.++|.-.+++++|.++|.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 46777777777777777777763 2333 34445555555666666666654
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.19 E-value=0.71 Score=48.02 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+++.-+++-++..+ +.||..+.-.++ +--.+..+.++.++|++..+.|- ..+..- ......|. ..+.+
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~---~~e~~ 250 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH---FWEAW 250 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc---hhhhh
Confidence 344444555555554 467665444333 33345567888888888775431 000000 00001111 11111
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCC
Q 047480 508 QSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--HGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPP 585 (719)
Q Consensus 508 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 585 (719)
.+-..+|-..+=..|...+++.|+.++|.+.++.+++..|. +-.....|+..|...+++.++..++.+-.+....+..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 11112222333345666678889999999999999887764 3456778888899999999999888887655554444
Q ss_pred cccE
Q 047480 586 GWSY 589 (719)
Q Consensus 586 ~~s~ 589 (719)
.++|
T Consensus 331 ti~Y 334 (539)
T PF04184_consen 331 TICY 334 (539)
T ss_pred HHHH
Confidence 4444
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.19 E-value=1.2 Score=41.89 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCCc----ccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 047480 78 TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN----FTFPFVLNSCARLSSFKSGCQIHCHIIKFG 139 (719)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 139 (719)
.....+.+.|++.+|++.|+.+.... |+. ...-.+..++-+.|+++.|...++..++.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY---PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445566777777777777777654 322 234455666667777777777777776654
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.08 E-value=0.41 Score=41.24 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh---HHHHHHHHhh
Q 047480 491 VDLLARDGRLDEAYGLIQSM----PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH---YVLLSNMLAE 562 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 562 (719)
.....+.|++++|.+.|+.+ |..| ..-.--.|+.++...+++++|...+++.+++.|.++.+ +...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445778888888888877 3333 23345567778888888999999999999988877643 3333333444
Q ss_pred cCC---------------hHHHHHHHHHHHhC
Q 047480 563 TYR---------------WEEARQVRKLMDDS 579 (719)
Q Consensus 563 ~g~---------------~~~A~~~~~~m~~~ 579 (719)
+.. ..+|..-|+.+.++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 333 55666666666553
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.94 E-value=0.22 Score=42.43 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHH---------------HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047480 449 GVTFVTVLCACSHGGLVEEGKQFFESML---------------NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--- 510 (719)
Q Consensus 449 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--- 510 (719)
..++..++.++++.|+++....+.+..- ...+.|+.....+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444455555555555555444443321 2234577777777888888888888887777654
Q ss_pred -CCCCCHHHHHHHHHHHHh
Q 047480 511 -PYDANSVIWRALLAACRL 528 (719)
Q Consensus 511 -~~~p~~~~~~~ll~~~~~ 528 (719)
+++-+...|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 444456777777766543
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.86 E-value=2.9 Score=39.93 Aligned_cols=173 Identities=12% Similarity=0.069 Sum_probs=95.2
Q ss_pred HhcCChHHHHHHHhcCCCC-CCChh---cHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHhcc--
Q 047480 392 AKCGSIDTALSVFYKIPKN-LKTVS---LFNSIISGLAQHGLGETSIAVFREMELM-GLKPDG--VTFVTVLCACSHG-- 462 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~~~-~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~~-- 462 (719)
.+.|++++|.+.|+.+... +-+.. +--.++-++-+.+++++|+..+++.... +-.||. +.|...++-+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4568888888888887754 22332 3334455677788888888888887763 223332 2333333322221
Q ss_pred --CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHH
Q 047480 463 --GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIW--RALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 463 --g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~ 538 (719)
.+...+.+.|..+.+ ++.-|=.+.-..+|..-+..+. |.... .++..-|.+.|.+..|..-
T Consensus 125 ~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 125 VTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred cccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 222223333322221 1111111111112222211111 11111 1223447888999999999
Q ss_pred HHHHhccCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 539 GQKLLDLEPDHGA---HYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 539 ~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.+++--|+.+. .+..+..+|...|..++|.+.-+-+...
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9999987766543 4667788999999999999987776643
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=1.7 Score=40.84 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-----CC--CCH-HHHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCchhH
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSMP-----YD--ANS-VIWRALLAACRLHRNAKIGEIAGQKLLD----LEPDHGAHY 553 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~~-----~~--p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 553 (719)
.|......|.|..+++||-..|.+-. .. |+. -.+-+.|-.+....++..|++.++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34455566777777777666555431 11 121 1233333334555677777777777544 356666677
Q ss_pred HHHHHHHhhcCChHHHHHHH
Q 047480 554 VLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 554 ~~l~~~~~~~g~~~~A~~~~ 573 (719)
..|+.+| ..|+.|++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777776 567777766553
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.76 E-value=7.1 Score=41.85 Aligned_cols=128 Identities=12% Similarity=0.150 Sum_probs=78.5
Q ss_pred CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH
Q 047480 72 NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFT-FPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNAL 150 (719)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 150 (719)
+...|+.+|..--+....+.+...|..++..- |..+- |.....-=.+.|..+.+..+|+..+. |++.++..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 44557777765555555566666777776544 44432 22222223466777777777777664 445666666666
Q ss_pred HHHHHh-cCChhHHHHHHccCCC------CChhhHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047480 151 IHFYSI-FGYINNAHKVFEGSLA------RDLVSYNTLINGYAQVKEPCPALWLFRKMQD 203 (719)
Q Consensus 151 i~~y~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (719)
+..... .|+.+..+..|+.... .....|...|.--...+++.....+|++.++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 555443 3666666667765332 2445677777777777777888888877775
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.74 E-value=0.16 Score=52.49 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444555555555555555442 334432 23455555555555555555555555554
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.67 E-value=0.27 Score=43.45 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HcCCccChhH
Q 047480 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-----NYGIKPQMEH 486 (719)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~ 486 (719)
.++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. +.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34444445555555555555555431 2234455555555555555555555555442 3455555443
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=94.32 E-value=1.9 Score=44.88 Aligned_cols=144 Identities=8% Similarity=0.008 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC
Q 047480 430 GETSIAVFREMEL-MGLKPDGV-TFVTVLCACS---------HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG 498 (719)
Q Consensus 430 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 498 (719)
.+.|+.+|.+... +.+.|+-. .|..+...+. ......+|.+.-+..++.+ .-|......+..++.-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4567888888872 23566653 3333322211 1334567777777777654 445777777888888888
Q ss_pred CHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH--HHHHHHHhhcCChHHHHHHHH
Q 047480 499 RLDEAYGLIQSM-PYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY--VLLSNMLAETYRWEEARQVRK 574 (719)
Q Consensus 499 ~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~ 574 (719)
+++.|..+|++. ...||. .+|......+...|+.++|.+..+++++++|....+- -..+++|...+ .++|.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 999999999998 466754 4565555567788999999999999999999865443 34445676654 566666654
Q ss_pred H
Q 047480 575 L 575 (719)
Q Consensus 575 ~ 575 (719)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 3
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=1.1 Score=43.85 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=85.4
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH--H--HHHhccCcHHH
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV--L--CACSHGGLVEE 467 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~ 467 (719)
-.|+..+|-..++++.+. |.|..+|+--=.+|..+|+.+.-...+++..-. ..||...|.-+ + -++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666666666555 667777777777777777777777777766543 34554322211 1 23345677777
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHH
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDAN-------SVIWRALLAACRLHRNAKIGEIAGQ 540 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (719)
|.+.-++..+.+ +.|.-.-.++...+.-.|++.|+.++..+-...-+ ..-|..-+ .+...+.++.|+.+|.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHHH
Confidence 777666665432 22334445566666677777777777766531111 01122111 1233456677776665
Q ss_pred HHh--ccCCCCc
Q 047480 541 KLL--DLEPDHG 550 (719)
Q Consensus 541 ~~~--~~~p~~~ 550 (719)
+-+ +++.+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 432 3455554
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=1.7 Score=42.23 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=88.6
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChhH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL---LAACRLHRNAKI 534 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~~ 534 (719)
.....|+..++...|+...... .-+...--.|..+|...|+.++|..++..+|.+-...-|..+ +....+..+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4667899999999999988532 223566677889999999999999999999865444444442 222333333332
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+..+.
T Consensus 222 ~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 3445567799999999999999999999999999887777653
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.19 E-value=7.8 Score=39.92 Aligned_cols=442 Identities=12% Similarity=0.073 Sum_probs=237.8
Q ss_pred HHHHHHhccCCC-C-CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHH
Q 047480 59 FRSRILFSQIDN-P-NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII 136 (719)
Q Consensus 59 ~~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 136 (719)
.+-.++=+++.. | |..+|-.||.-|...+.+++..+++++|...- |--...|..-+++=....++.....+|.+.+
T Consensus 26 ~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 26 GDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 344466666654 4 67789999999999999999999999997643 1234567777777667789999999999998
Q ss_pred HhCCCCChhHHHHHHHHHHhcCC---------hhHHHHHHcc--CCC-CChhhHHHHHHHHH---cCCCcc------hHH
Q 047480 137 KFGLEFDLFIRNALIHFYSIFGY---------INNAHKVFEG--SLA-RDLVSYNTLINGYA---QVKEPC------PAL 195 (719)
Q Consensus 137 ~~g~~~~~~~~~~Li~~y~~~g~---------~~~A~~~f~~--~~~-~~~~~~~~li~~~~---~~g~~~------~A~ 195 (719)
+..+. +..|..-++---+... +-+|-++.-. +.+ ....-|+..+.-+- ..|.++ ...
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 87654 5555555544333321 1122221111 111 23445665544322 233333 333
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhC-----C-CCCchHHHHHHHHHHHhcCChHHHHHH
Q 047480 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLG-----C-VGSNMLLKTAVINMYAKCGLMNMAERV 269 (719)
Q Consensus 196 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-----~-~~~~~~~~~~li~~y~~~g~~~~a~~~ 269 (719)
+.+.+|+.. -.|++++...-++....... . +.....+| ..|...
T Consensus 182 ~~Y~ral~t-----------------P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~y-------------m~ar~~ 231 (660)
T COG5107 182 NGYMRALQT-----------------PMGNLEKLWKDYENFELELNKITARKFVGETSPIY-------------MSARQR 231 (660)
T ss_pred HHHHHHHcC-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH-------------HHHHHH
Confidence 444444432 11222222211111110000 0 00000011 111111
Q ss_pred HHHc-----CC----CCchHH-----------HHHHHHHHHh-----cCCH--HHHHHHHhhcCC---CChhhHHHHHHH
Q 047480 270 FSTM-----GM----SKSTAA-----------WSSMISGYTR-----EGKI--ERARQLFDQMDQ---RDLVSWTAMISG 319 (719)
Q Consensus 270 ~~~~-----~~----~~~~~~-----------~~~li~~y~~-----~g~~--~~A~~~f~~m~~---~~~~~~~~li~~ 319 (719)
+++. |+ +.+..+ |-..|.-=.. .|+. ..-.-+|++... -....|----.-
T Consensus 232 yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y 311 (660)
T COG5107 232 YQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEY 311 (660)
T ss_pred HHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1111 11 001111 2222221111 1111 111112222221 122334443444
Q ss_pred HHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---hcC
Q 047480 320 YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA---KCG 395 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~---k~g 395 (719)
+...++-+.|+....+-... .|. +...+.-|..+. +-+.....|+....... ---+.++.=+ ..|
T Consensus 312 ~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~------r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 312 LIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK------RKYSMGESESASKVDN 380 (660)
T ss_pred HhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH------HHHhhhhhhhhccccC
Confidence 55677778888776654322 233 333344443332 33333333332111000 0000000000 123
Q ss_pred ChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG-LKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
+.+...+++-+-.. .-...|...+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-+ ..|+..-|..+|+.
T Consensus 381 N~e~~~Ell~kr~~--k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifel 457 (660)
T COG5107 381 NFEYSKELLLKRIN--KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFEL 457 (660)
T ss_pred CccccHHHHHHHHh--hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHH
Confidence 44433333322222 445678888988888888999999999999998 567777888888655 45888999999987
Q ss_pred HHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 475 MLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP--YDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 475 m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
-..+ -|| ...-+-.++-+.+-++-..|..+|+... +..+ ..+|..+|.--..-|+...+..+-+++.++.|+.
T Consensus 458 Gl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 458 GLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6632 244 3344566778889999999999999651 2223 5689999999899999999999999999999986
Q ss_pred c
Q 047480 550 G 550 (719)
Q Consensus 550 ~ 550 (719)
.
T Consensus 536 n 536 (660)
T COG5107 536 N 536 (660)
T ss_pred h
Confidence 3
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.04 E-value=0.66 Score=39.54 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHcc
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGL 358 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (719)
..++.++|-++++.|+++....+.+..=.-|+. +-...+. --......|+..++.+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445566666666666666666665543211110 0000000 111233566777777777777777
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047480 359 GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391 (719)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 391 (719)
+++..|.++.+......+++.+..+|..|++-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777776666666666666666666543
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.90 E-value=5.8 Score=37.42 Aligned_cols=199 Identities=16% Similarity=0.087 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CChhcHHHHHH-
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENV-VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNL-KTVSLFNSIIS- 422 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~~~li~- 422 (719)
.........+...+....+...+. ..... ........+..+...+...++...+...+....... .+...+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLE-KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHH-HHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444444555555555555544 22211 222334444555556666666777777777665431 22222333333
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhc
Q 047480 423 GLAQHGLGETSIAVFREMELMGLKP----DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARD 497 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 497 (719)
.+...|+.+.|...|.+... ..| ....+......+...++.+.+...+....... .. ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 67888888899888888855 333 22344444444667888999999998888532 22 367777888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 498 GRLDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 498 g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+++++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999888876 33444 445555555555667799999999999998886
No 246
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.80 E-value=14 Score=41.53 Aligned_cols=123 Identities=11% Similarity=-0.074 Sum_probs=57.5
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHH-cCCCchHHHHHHHHhHhCCCCCCCcc-----cHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYS-RSDSPQEALVLYTSMLSKGIVSPNNF-----TFP 113 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~p~~~-----~~~ 113 (719)
.-|-.||.+-.+ | ++.+.+-|.--|..+..++-.+...|. .+.++++|...+++.....-. ++.. .-.
T Consensus 31 ~~Y~kLI~~ai~--C---L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ 104 (608)
T PF10345_consen 31 KQYYKLIATAIK--C---LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQF 104 (608)
T ss_pred HHHHHHHHHHHH--H---HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence 446666666666 5 333333222222234455566666666 567788888877766443321 2211 112
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCC----CChhHHHHH-HHHHHhcCChhHHHHHHcc
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFGLE----FDLFIRNAL-IHFYSIFGYINNAHKVFEG 169 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~L-i~~y~~~g~~~~A~~~f~~ 169 (719)
.++..+.+.+. ..|....+..++.--. +-.+.+.-+ +..+...++...|.+.++.
T Consensus 105 ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 105 LLARIYFKTNP-KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 23333333333 3366666665543211 112222222 2222223566666666654
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.76 E-value=7.9 Score=38.50 Aligned_cols=17 Identities=6% Similarity=-0.349 Sum_probs=10.9
Q ss_pred HHhcCChhHHHHHHHHH
Q 047480 526 CRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~ 542 (719)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45666777777766644
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.83 Score=46.26 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=94.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
.+.|.+.|++..|..-|++.... |. +...-+.++..... ..-...+..|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 35677777888887777776542 00 11111112222111 12234566778888999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 047480 501 DEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEA-RQVRKLMD 577 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 577 (719)
.+|++..++. ..+| |.-..-.=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+....++. .+++..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888776 3444 5555556667888999999999999999999999988888888777666655554 77888886
Q ss_pred hC
Q 047480 578 DS 579 (719)
Q Consensus 578 ~~ 579 (719)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 54
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.67 E-value=2.7 Score=36.69 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=9.6
Q ss_pred HHHHHHhccCcHHHHHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~ 474 (719)
.++..|.+.+.++++.-++..
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 344444444444444444433
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.47 E-value=1.9 Score=45.83 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=87.1
Q ss_pred HHhcCChhHHHHHHH--HhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 047480 320 YSQVGGFSQALELFG--KMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSI 397 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 397 (719)
..-+++++++.+..+ ++.. .++ ..-...++.-+.+.|..+.|.++-.. | ..-.+...++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D--------~-----~~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD--------P-----DHRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS---------H-----HHHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC--------h-----HHHhHHHHhcCCH
Confidence 345666666665554 1111 111 23355566666666777766665541 1 2334556678888
Q ss_pred HHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 398 DTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 398 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
+.|.++-++. .+...|..|.......|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++-+....
T Consensus 335 ~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888877666 3556788888888888888888888876542 34455556667777666666655554
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047480 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP 511 (719)
Q Consensus 478 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~ 511 (719)
.| -++....++.-.|+.++..+++.+.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44 13334444455566666666666653
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=0.53 Score=45.18 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=33.0
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++...|+++.|...|..+.+-.|++ |.++.-|+....+.|+.++|..++++..++
T Consensus 186 e~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 186 ESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34445555555555555555544433 345666666666777777777776666654
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.44 E-value=13 Score=40.05 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHHHHh----cCChHHHHHHHHHc-CCCCchHHH
Q 047480 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM-----LLKTAVINMYAK----CGLMNMAERVFSTM-GMSKSTAAW 282 (719)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~-----~~~~~li~~y~~----~g~~~~a~~~~~~~-~~~~~~~~~ 282 (719)
+..++...+=.||.+.|.+.+....+. .++.... ..|...+..+.. ....+.+.+++..+ ..-|+...|
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 455666666778888888888887664 2333222 233333433333 44567788888888 444554444
Q ss_pred H-HHHHHHHhcCCHHHHHHHHhhcCC-------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHH
Q 047480 283 S-SMISGYTREGKIERARQLFDQMDQ-------RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRA 354 (719)
Q Consensus 283 ~-~li~~y~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 354 (719)
. .-.+.+...|++++|.+.|+.... -....+--+.-.+.-..++++|.+.|.++.+.. ..+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 345667788999999999997553 122334455666778899999999999998753 3455555555554
Q ss_pred H-HccCCh-------HHHHHHHH
Q 047480 355 C-VGLGAL-------DFGKRLHQ 369 (719)
Q Consensus 355 ~-~~~~~~-------~~a~~~~~ 369 (719)
| ...++. ++|.+++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHH
Confidence 4 345556 66666666
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.38 E-value=5 Score=34.99 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=80.6
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
......++..+.+.+.......+++.+...+ ..+....+.++..|++.. .++..++++. .++.......+..
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445567777777788888888888888765 355567777777777653 3444455442 1233344456777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLH-RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
+.+.+.++++.-++.+++.. ...+..+..+ ++.+.|.+.+.+ ++++..|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77788888888888877532 2222233334 778888887775 234556666665543
No 254
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.36 E-value=5.1 Score=41.92 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=145.8
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~ 119 (719)
.+-|+++..|.. |-+.-.++.++.| ..-+++..+..+-.+.-...+..+|+.-| .+...|..++++|
T Consensus 43 ~~k~si~~lyis----g~~~~s~~~l~d~------~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y 109 (711)
T COG1747 43 HSKNSIIALYIS----GIISLSKQLLDDS------CLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCY 109 (711)
T ss_pred HhhhhhHHHHHH----HHHHhhhccccch------HHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHH
Confidence 567888888886 7777777766654 35678889999988888899999999988 7888999999999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-----C-Ch---hhHHHHHHHHHcCCC
Q 047480 120 ARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA-----R-DL---VSYNTLINGYAQVKE 190 (719)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~-~~---~~~~~li~~~~~~g~ 190 (719)
... .-+.-..+++++++..+ .|++....|...|-+ ++.+.+..+|.+... + +. ..|.-|+..- ..+
T Consensus 110 ~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD 184 (711)
T COG1747 110 KEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDD 184 (711)
T ss_pred Hhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--ccc
Confidence 988 45777889999988875 466677777777776 888899888876432 2 11 2577666522 345
Q ss_pred cchHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 047480 191 PCPALWLFRKMQD-SCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMY 257 (719)
Q Consensus 191 ~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y 257 (719)
.+..+++..+... .|..--...+-.+-.-|....+++++.++...+.+. ...|+.....++..+
T Consensus 185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~---d~k~~~ar~~~i~~l 249 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH---DEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh---cchhhhHHHHHHHHH
Confidence 6666666666643 355555566666777788899999999999988887 455666665555544
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.32 E-value=4.4 Score=34.21 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=50.9
Q ss_pred cCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
||++......+-.+. .+.......+.....+|+-+.-.+++.++.+. -.|++.....+.+||.+.|+..++.+++.
T Consensus 69 C~NlKrVi~C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -S-THHHHHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcchHHHHHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444444444443332 23334556677788888888888888887653 37777888888888888898888888888
Q ss_pred HHHHcCCc
Q 047480 474 SMLNYGIK 481 (719)
Q Consensus 474 ~m~~~g~~ 481 (719)
++-+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 88887753
No 256
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.31 E-value=4.3 Score=37.50 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=107.7
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 468 (719)
|-..|-..-|+--|.+.... |.-+..||-+.--+...|+++.|.+.|+...+. .|.- .++..-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhh
Confidence 33445555555555554443 344557888888889999999999999988874 3322 2332222245567888888
Q ss_pred HHHHHHHHHcCCccChhHHHHHH-HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMV-DLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.+=|...-.. .|+. -|.+|- -.-.+.-+..+|..-+.+--.+.|..-|...|-.+.-..--+ +.+++++.+-..
T Consensus 153 q~d~~~fYQ~--D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQD--DPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhc--CCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhcc
Confidence 7766555422 2222 222221 122233456666654433222346667777666543322111 223344433322
Q ss_pred CC-------chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 548 DH-------GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 548 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
++ ..+|.-|+.-|...|..++|..+|+.....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 32 3578999999999999999999999987544
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.23 E-value=0.13 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777788888888888888888775
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.23 E-value=1.8 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=11.9
Q ss_pred HHHHHHHHccCChHHHHHHHH
Q 047480 349 VAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 349 ~~ll~a~~~~~~~~~a~~~~~ 369 (719)
..++....-.|+-+.|.+.+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~ 212 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLW 212 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHH
Confidence 344455555566666666665
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.12 E-value=1.7 Score=43.17 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=27.4
Q ss_pred HHhcCChhHHHHHHHHhHhc--CCCCChhHHHHHHHHHHccCChHHHHHH
Q 047480 320 YSQVGGFSQALELFGKMESL--GIHPDEVTMVAVLRACVGLGALDFGKRL 367 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 367 (719)
+.+..+.++|+..+.+-..+ ...--..++..+..+.++.|..+++...
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 44567778888887776643 1111224555566666666666555443
No 260
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=4.8 Score=37.94 Aligned_cols=143 Identities=14% Similarity=0.064 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-----VTFVTVL 456 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll 456 (719)
..++--..+|..+|..+.|-..+++..+ ...+-++++|+++|++...--..-+. ..+..+-
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak--------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK--------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 3455667788888888877776665433 23345677777777765532111111 1233344
Q ss_pred HHHhccCcHHHHHHHHHHHH----HcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHH
Q 047480 457 CACSHGGLVEEGKQFFESML----NYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM---P--YDA-NSVIWRALLAA 525 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~----~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~---~--~~p-~~~~~~~ll~~ 525 (719)
..+.+...+++|-..|.+-. +..--++ -..|-..|-.|.-..++..|...++.- | ..| +..+...||.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 45556666776665554432 1111122 223455556666778899999999884 3 222 55688888888
Q ss_pred HHhcCChhHHHHHH
Q 047480 526 CRLHRNAKIGEIAG 539 (719)
Q Consensus 526 ~~~~g~~~~a~~~~ 539 (719)
| ..|+.|+...++
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 7 457777776654
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.09 E-value=8.6 Score=44.62 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=32.7
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 293 GKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 293 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
|++++|..-+..+. ...|.-.+.---++|.+.+|+.++ .|+...+..+..+|+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya 946 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYA 946 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHH
Confidence 45677776666665 233444455556778888888775 566666665555543
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.02 E-value=0.2 Score=31.04 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.|..+...+...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666677777777777777777777754
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.83 E-value=0.36 Score=43.59 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 493 LLARDGRLDEAYGLIQSM-P-YDA-----NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
-+.+.|++++|..-|.+. . .++ ..+.|..-..+..+.+..+.|+..+.+++++.|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777776666554 1 111 234455555667788999999999999999999888888888999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 047480 566 WEEARQVRKLMDDSGI 581 (719)
Q Consensus 566 ~~~A~~~~~~m~~~~~ 581 (719)
+++|.+-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987543
No 264
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.74 E-value=20 Score=40.28 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHH
Q 047480 427 HGLGETSIAVFREMELM-GLKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA 503 (719)
..+.+.|..++.+.... ++.+... ....+.......+..+++...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34557777777766432 2333222 22233222222222445555555443211 2333344444455577777777
Q ss_pred HHHHHhCCCC-CCHHHHHHH-HHHHHhcCChhHHHHHHHHHh
Q 047480 504 YGLIQSMPYD-ANSVIWRAL-LAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 504 ~~~~~~~~~~-p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~ 543 (719)
...|..|+.. .+..-|.-- ..+....|+.++|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777421 122222222 223344677777777777764
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.72 E-value=3.1 Score=44.22 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHHh--hcC-CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 290 TREGKIERARQLFD--QMD-QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 290 ~~~g~~~~A~~~f~--~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
.-.|+++++.+... ++. .-...-.+.++.-+.+.|.++.|+++.+. +. .-.....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHH
Confidence 34567777444433 111 11133467777888888888888887433 21 12334456788888877
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 047480 367 LHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLK 446 (719)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (719)
+-. ...+...|..|.+...++|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 340 ~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 340 IAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 665 235677999999999999999999999999987 88888889999998777777766665541
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 447 PDGVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
++....++.-.|++++..+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444445577776665554
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.56 E-value=6.3 Score=37.68 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMG-LKP-DGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~ 493 (719)
|-.=+..-.+.|++++|.+.|+.+.... ..| ...+...++.++-+.+++++|....++.. .++-.|+. -|...+.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHH
Confidence 3333444566778888888888777542 111 12356666667777777777777777777 44434443 23333434
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-----------------hhHHHH
Q 047480 494 LARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG-----------------AHYVLL 556 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l 556 (719)
++ .|..++.. -+...-...|...++.+++-.|++. +.-..+
T Consensus 116 Ls----------~~~~i~~~------------~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 116 LS----------YFFQIDDV------------TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred HH----------HhccCCcc------------ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 33 11111100 0011112344555556666666543 233478
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 047480 557 SNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++.|.+-|.|.-|..-++.|.+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 88999999999999999999875
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.28 E-value=15 Score=37.73 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---Chh----hHHHHHHHHHh---cCChhHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQR---DLV----SWTAMISGYSQ---VGGFSQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
...|+-.|-...+++...++++.+... ++. .--...-++-+ .|+.++|++++..+....-.++..|+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 335555688888888888888888763 111 11223345556 78899999999986665567777787766
Q ss_pred HHHH
Q 047480 352 LRAC 355 (719)
Q Consensus 352 l~a~ 355 (719)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=1.7 Score=42.73 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=118.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH----HHHHhcCCHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV----DLLARDGRLD 501 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~ 501 (719)
-+|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++... ..||...|..+- -++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888999999999875 5667788888889999999999999999998832 246655554443 3455899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----chhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH----GAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
+|++.-++. .+.| |.-.-.++.......|+..++.+.+.+--..-.+. .-.|...+-.+...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999887 4444 44555666666788899999998877654332221 23466777777888999999999988
Q ss_pred HHhCCCCCCCcc
Q 047480 576 MDDSGIQKPPGW 587 (719)
Q Consensus 576 m~~~~~~~~~~~ 587 (719)
-.-+.+.++.+.
T Consensus 273 ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 273 EIWKRLEKDDAV 284 (491)
T ss_pred HHHHHhhccchh
Confidence 766666666654
No 269
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=7.8 Score=43.17 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=67.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 504 (719)
-+.|++++|...|-+-+.. +.|.. ++.-|..+..+.+-..+++.+.+.|+ .+..+-..|+.+|.+.++.+.-.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHH
Confidence 3456666666655554432 23322 22333444455555555555555553 34455556666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 505 GLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 505 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
++++..+..--..-....+..|++.+-.++|..++.+.-. .+ ..+--.+-..|++++|.++++.|
T Consensus 452 efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he------~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HE------WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CH------HHHHHHHHHhcCHHHHHHHHhcC
Confidence 6666553100011133444555555555555555554322 11 11222334455556655555544
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.62 E-value=8.4 Score=34.07 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=58.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNA 532 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~ 532 (719)
+++.-...++.+++..++..+.. +.|. ...-..-...+.+.|++.+|+.+|+++. ..|....-.+|+..|.....-
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33344566788888888887774 3444 2233334456778889999999998884 345556667777777666554
Q ss_pred hHHHHHHHHHhccCCC
Q 047480 533 KIGEIAGQKLLDLEPD 548 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~ 548 (719)
..=....+++++..|+
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 4444556666666553
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.51 E-value=0.99 Score=43.16 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=68.6
Q ss_pred hHHHHHHhccCC--CCCccHHHHHHHHHHcC-----CCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccC-------
Q 047480 58 LFRSRILFSQID--NPNIFIWNTLMRGYSRS-----DSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLS------- 123 (719)
Q Consensus 58 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~------- 123 (719)
+-.-+..|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+. -|..+|..||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHH
Confidence 344566777776 57888888888877653 4455556677888888888 88888888888765432
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 124 ---------SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 124 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
.-.-+..++++|...|+.||..+-..|++++.+.+
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12335566777777777777777777777666554
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.42 E-value=31 Score=40.40 Aligned_cols=58 Identities=7% Similarity=0.134 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCC------CchHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCC
Q 047480 252 AVINMYAKCGLMNMAERVFSTMGMS------KSTAAWSSMISGYTR-EGKIERARQLFDQMDQRD 309 (719)
Q Consensus 252 ~li~~y~~~g~~~~a~~~~~~~~~~------~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~ 309 (719)
+.+.-+.+.+++.+|....++..+. -++..+-.-+.++.+ .++.+--..++-.+.+.|
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eD 746 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEED 746 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccch
Confidence 4455667777788888887776222 223333333444444 345555555555665433
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.26 E-value=1.6 Score=36.67 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=60.1
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHhccCcH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDG--VTFVTVLCACSHGGLV 465 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~~g~~ 465 (719)
+.+..|+++.|.+.|.+.... +.....||.-..++.-.|+.++|++=+++..+. |-+.-. ..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456678888888888776554 567778888888888888888888888877763 222111 2343333445666777
Q ss_pred HHHHHHHHHHHHcC
Q 047480 466 EEGKQFFESMLNYG 479 (719)
Q Consensus 466 ~~a~~~~~~m~~~g 479 (719)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777666555
No 274
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.13 E-value=1.2 Score=43.44 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMEL-----MGLKPDGVTFVTV 455 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 455 (719)
.++..++..+..+|+.+.+.+.++++... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677889999999999999999887765 67888999999999999999999999988875 4666666655544
Q ss_pred HHH
Q 047480 456 LCA 458 (719)
Q Consensus 456 l~a 458 (719)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.94 E-value=8.4 Score=33.36 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=64.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPD---GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 497 (719)
.....+.|++++|.+.|+.+...- +.. ...-..++.++.+.+++++|...+++.++.........|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 334456777777777777777641 211 1355566777777778888877777777543222234455555554433
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 498 GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 498 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
...+.+ +..+. ..=+..+....|...|+++++..|++.
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 322211 11111 011122345678888888888899864
No 276
>PRK09687 putative lyase; Provisional
Probab=90.46 E-value=20 Score=35.64 Aligned_cols=192 Identities=8% Similarity=-0.019 Sum_probs=81.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh----hHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGF----SQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
.+|..+....+..+...|..+....+..-+..+|...=..-+.++.+.|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555565555543333333333344444444445555555553 3566666655332 3444444444
Q ss_pred HHHHHccCChHH--HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCC-
Q 047480 352 LRACVGLGALDF--GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG- 428 (719)
Q Consensus 352 l~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 428 (719)
+.++...+.... ...... .....-..++..+-...+.++++.++.+....+...+.. +|...-...+.++.+.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~-~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVE-QSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKD--PNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHhcccccccccchHHHH-HHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCC
Confidence 444444321110 011111 111111123444555555555555553322222222333 33333333334444332
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
+...+...+..+.. .+|...-...+.++.+.|+. .+...+-...
T Consensus 189 ~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L 232 (280)
T PRK09687 189 DNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKEL 232 (280)
T ss_pred CCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHH
Confidence 12344444444442 33444444455555555552 3333333333
No 277
>PRK15331 chaperone protein SicA; Provisional
Probab=90.41 E-value=1.1 Score=39.76 Aligned_cols=92 Identities=12% Similarity=-0.069 Sum_probs=62.5
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll 116 (719)
-+|..=-+.|.. |++++|..+|.-... -|..-|..|..++-..+++++|+..|...-..+. -|...+-...
T Consensus 39 ~iY~~Ay~~y~~----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~ag 112 (165)
T PRK15331 39 GLYAHAYEFYNQ----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHH
Confidence 345545556665 888888888876532 3455577777777778888888888877665542 3445555666
Q ss_pred HHHhccCCcHHHHHHHHHHHH
Q 047480 117 NSCARLSSFKSGCQIHCHIIK 137 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~ 137 (719)
.++...|+.+.|+..|..++.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677777888888877777766
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=35 Score=38.38 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=42.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcC
Q 047480 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD-LEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 564 (719)
++..+.+..+.+++..+.+..+.. ++..|-.++..+.+.+.++.-.+...+.++ ...++--.-..+.+++++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 344555666777777777776533 677788888877777766665555555443 11111122234555555554
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.28 E-value=0.52 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999988844
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.80 E-value=32 Score=37.10 Aligned_cols=382 Identities=12% Similarity=0.091 Sum_probs=218.2
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHH-HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVA-MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTA 252 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~ 252 (719)
+...|+.+|..--.....+.+..++..++.. .|-..-|=. ...-=.+.|..+.+..+|+..++. ++.++..|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 5567888887666666666677777777753 566554422 222235678888888999888885 7777777766
Q ss_pred HHHHHH-hcCChHHHHHHHHHc----CCC-CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh---c
Q 047480 253 VINMYA-KCGLMNMAERVFSTM----GMS-KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQ---V 323 (719)
Q Consensus 253 li~~y~-~~g~~~~a~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~---~ 323 (719)
...... ..|+.+...+.|+.. |.. .+...|-..|..-..++++.....+++++.+--...++..-.-|.+ .
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 655443 456666677777766 433 3455777777777788888888888888877555555554444432 2
Q ss_pred ------CChhHHHHHHHHhHhc----CCCCChhHHHHHHHHHH-ccCChHHHH------------------------HHH
Q 047480 324 ------GGFSQALELFGKMESL----GIHPDEVTMVAVLRACV-GLGALDFGK------------------------RLH 368 (719)
Q Consensus 324 ------g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~-~~~~~~~a~------------------------~~~ 368 (719)
...+++.++-...... ...+....+..-+.--. ..+.++... ..+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1233444333322221 00011111111111110 011111111 111
Q ss_pred HHHHHHcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 369 QQYIENVV-------FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 369 ~~~~~~~~-------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
+ ...+.. ..++...|..-++.-.+.|+.+...-.|++..-. ..=...|-..+.-....|+.+-|-.++...
T Consensus 279 E-~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 279 E-EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred h-hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 1 011110 1123445666666667777777777777765541 111224555554444457777777666655
Q ss_pred HHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCC
Q 047480 441 ELMGL--KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAY---GLIQSM-PYD 513 (719)
Q Consensus 441 ~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~ 513 (719)
.+--+ .|....+.+.+ +-..|+.+.|..+++..... + |. ...-..-+....|.|..+.+. +++... +.+
T Consensus 358 ~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 54322 22222333333 45678999999999988832 2 55 333444466777888888887 555444 222
Q ss_pred CCHHHHHHHH----H-HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 514 ANSVIWRALL----A-ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 514 p~~~~~~~ll----~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
-+..+...+. . -+...++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 2222222222 1 14556889999999999999999998889888888776653
No 281
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.71 E-value=3.4 Score=39.81 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=43.2
Q ss_pred ccCcHHHHHHHHHHHHHcCCc--cChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChh
Q 047480 461 HGGLVEEGKQFFESMLNYGIK--PQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYDANS-VIWRALLAACRLHRNAK 533 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~-~~~~~ll~~~~~~g~~~ 533 (719)
+.|++..|.+.|...++.... -....+-.|...+...|++++|...|..+ |..|-. ...--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555532100 01223334555566666666665555444 222211 22333333345556666
Q ss_pred HHHHHHHHHhccCCCCc
Q 047480 534 IGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~ 550 (719)
+|...++++.+-.|+.+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666554
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.99 E-value=8.3 Score=38.54 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCC-----CCChhcHHHHHHHHHhCCC----hhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCc--
Q 047480 398 DTALSVFYKIPKN-----LKTVSLFNSIISGLAQHGL----GETSIAVFREMELMGLKPDGV--TFVTVLCACSHGGL-- 464 (719)
Q Consensus 398 ~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~-- 464 (719)
.+|.++|+.|.+. .++-..+..++.. ..++ .+.+..+|+.+.+.|+..+.. +...+|..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 3455555555543 2333344444433 2222 355677888888888776553 34444433333222
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
+.++.++++.+.+.|+++...+|..+.-+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45788889999988999998888766533
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.86 E-value=0.56 Score=29.01 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555555666777777777777777777664
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.59 E-value=0.89 Score=44.61 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=76.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCC
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMP-YD-ANSVIWRALLAACRLHRN 531 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~ 531 (719)
-.+-|.+.|.+++|+..|...+. +.| +..++..-..+|.+..++..|+.=....- +. .-.-.|..-..+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34568889999999999988774 345 77888888889999999887776555431 11 112234444444456788
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.++|.+-++.+++++|++.. |-..|++.....|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 99999999999999998643 33444444445554443
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.58 E-value=0.56 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=21.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 450 (719)
+|..+...|.+.|++++|+++|++.++. .|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 4566667777777777777777777763 45543
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.42 E-value=33 Score=35.35 Aligned_cols=148 Identities=8% Similarity=-0.024 Sum_probs=77.5
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC--hhH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP---DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ--MEH 486 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~ 486 (719)
....+|..++..+.+.|+++.|...+.++...+..+ +......-.......|+..+|...++......+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445578888888888888888888888877643221 122233334445566788888888777764222222 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 487 YGCMVDLLARDGRLDEAYGL-IQSMPYDANSVIWRALLAACRL------HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
...+...+.. ..+..... ......+.-...+..+...+.. .++.+.+...++++.++.|+....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222333 3778889999999999999887777777776
Q ss_pred Hh
Q 047480 560 LA 561 (719)
Q Consensus 560 ~~ 561 (719)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 64
No 287
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.39 E-value=16 Score=36.64 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=66.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCccChhHHHH-
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKP-D----GVTFVTVLCACSHGGLVEEGKQFFESML----NYGIKPQMEHYGC- 489 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~- 489 (719)
|..++.-.+.++++++.|+...+.--.. | -..+..|-+.|.+..++++|.-+..... ..++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555666777777776655421111 1 1356666667777777777766555443 2232211222222
Q ss_pred ----HHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 490 ----MVDLLARDGRLDEAYGLIQSM-------PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 490 ----li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
|.-+|-..|++-+|.+.-++. +.+| .......+.+.|+..|+.|.|..-++.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223444556555555555443 2222 122344556667788888887777777654
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.79 E-value=8.9 Score=35.04 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=49.9
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHH---HcCCccC----hhH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV--TFVTVLCACSHGGLVEEGKQFFESML---NYGIKPQ----MEH 486 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~---~~g~~p~----~~~ 486 (719)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++. +.|-.++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34555555666666666666666666554444442 44555555666666666666655554 2111111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
|..|. +...|++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 33332 23467888888777766
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.30 E-value=1 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhH
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSML 100 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~ 100 (719)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.99 E-value=23 Score=36.55 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP----DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
...+|..+...++++|+++.|...+.++.+..+ ..+.....-+..+...|+.++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999988652 2456777788999999999999999988887433
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.89 E-value=2.6 Score=37.19 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=34.8
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|..+++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666666666666666666666666666666666665543
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.66 E-value=31 Score=33.14 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=143.5
Q ss_pred CCCCchHHHHHHHHHH-HhcCCHHHHHHHHhhcCC--C--C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhc---CC-
Q 047480 274 GMSKSTAAWSSMISGY-TREGKIERARQLFDQMDQ--R--D---LVSWTAMISGYSQVGGFSQALELFGKMESL---GI- 341 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~m~~--~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 341 (719)
+.+||+..-|..-+.- .+...+++|..-|....+ + . ....-.+|..+.+.+++++.++.+++|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455554444322221 234467778877777653 1 1 123445778888888888888888887531 11
Q ss_pred -CCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhcCCCC------
Q 047480 342 -HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNI----FLTTAVIDMYAKCGSIDTALSVFYKIPKN------ 410 (719)
Q Consensus 342 -~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~y~k~g~~~~A~~~~~~~~~~------ 410 (719)
.-+..+.++++.-.+...+.+.-..+++..+....-..+. .+.+-|...|...|++.+-.+++.++...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2244567777777666666666666665322211111111 12345667777777777777777765432
Q ss_pred CCC-------hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-----ccCcHHHHHH-HHHHHH-
Q 047480 411 LKT-------VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS-----HGGLVEEGKQ-FFESML- 476 (719)
Q Consensus 411 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~-~~~~m~- 476 (719)
..| ...|..=|..|....+-.+-..+|++...-.-.........+++-|. +.|.+++|.. +|+...
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 011 23566678888888888888888887764322222334445666664 4677887764 444444
Q ss_pred --HcCCccChh---HHHHHHHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047480 477 --NYGIKPQME---HYGCMVDLLARDGR----LDEAYGLIQSMPYDANSVIWRALLAACRLH 529 (719)
Q Consensus 477 --~~g~~p~~~---~~~~li~~~~~~g~----~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~ 529 (719)
+.| .|... -|-.|..++.++|- -+||.- ....|.....+.|+.+|..+
T Consensus 261 YDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 261 YDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred ccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 333 34433 35566777777762 122211 12345667788889888543
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=13 Score=39.99 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 292 EGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 292 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
.|+++.|..++..+++ ..-+.++..+-++|..++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e- 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE- 662 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh-
Confidence 4555555555544442 1223344444555555555543 2222110 1112334555555544331
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
..+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+
T Consensus 663 ------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 663 ------ANSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred ------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHH
Confidence 12333445555555555555555555544433 44444444444444433333
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=35 Score=33.50 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=62.5
Q ss_pred HHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC--ChhcHHHHHHHHHhCCChhH
Q 047480 355 CVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK--TVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 432 (719)
....++...+...+........ .+..+.-.+...|...|+.+.|..++..++.... ......+-|..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455666777776663333322 2344555677888888888888888888876411 11112222333444333333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 433 SIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 433 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..++-++.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333332 44 33344445555666677777666555554
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.78 E-value=3.8 Score=40.14 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++..++.++...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566667777777777777777777777777777777777777777777776654
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.20 E-value=3.1 Score=36.04 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=43.9
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|+||..+++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367788888888888888888888888888888888888888888888877653
No 297
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.61 E-value=16 Score=38.59 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHc-CCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHHHHh
Q 047480 454 TVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY--DANS--VIWRALLAACRL 528 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~--~p~~--~~~~~ll~~~~~ 528 (719)
.+...+.+.|..++|.+.|++|.+. ...........|+..|...+.+.++..++.+-.. -|.. ..|++.+--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 3444455667777777777777632 2111233455667777777777777777766531 1222 344444333333
Q ss_pred cCC---------------hhHHHHHHHHHhccCCCCc
Q 047480 529 HRN---------------AKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 529 ~g~---------------~~~a~~~~~~~~~~~p~~~ 550 (719)
.++ -..|.++..++.+.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 332 1235577888888887654
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.40 E-value=33 Score=31.46 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHH-----HHHHHHHhcCCHHHHH
Q 047480 432 TSIAVFREMELMGLKPDGVTFV--TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYG-----CMVDLLARDGRLDEAY 504 (719)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~eA~ 504 (719)
+.....+++....-+...-++. .+...+...|++++|..-++..... |....+. .|.......|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555555665532111112222 2334567788888888888877642 2333333 3456678899999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 505 GLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
..++....+. .......-.+.+...|+-++|+..|+++++.+++.
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9998764221 11112222345888899999999999999887654
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.08 E-value=3.5 Score=40.23 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CC--ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-----LK--TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV 450 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 450 (719)
+....+...+++.-....+++++...+-++... .+ +..+|-.+ +..-++++++.++..=++.|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccchh
Confidence 333444455555555566777777777666543 11 12223222 23346778999988888999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
|++.+++.+.+.+++.+|.++...|.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999888887776
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.74 E-value=33 Score=30.86 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 369 (719)
+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 444556667777777777776664221 22223445566666666555455554
No 301
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.65 E-value=19 Score=28.87 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH
Q 047480 286 ISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348 (719)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 348 (719)
+..+...|++++|..+.+.+.-||...|-++.. -+.|..+++..-+.+|...| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 445677899999999999998899999988765 45677777777777777776 4554444
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.61 E-value=1.6 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHH
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRK 574 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~ 574 (719)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988765
No 303
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.57 E-value=7.9 Score=34.87 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
+++|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4566777888888999999999999999987764
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.53 E-value=1.9 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.057 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.39 E-value=2.2 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777665
No 306
>PRK10941 hypothetical protein; Provisional
Probab=82.97 E-value=7.6 Score=38.09 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+.+-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566678999999999999999999999999889999999999999999999888877643
No 307
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.55 E-value=71 Score=33.89 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHH---HhcCCHHHHHHHHHhC--CCCCCHHH
Q 047480 445 LKPDGVTFV-TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL---ARDGRLDEAYGLIQSM--PYDANSVI 518 (719)
Q Consensus 445 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~eA~~~~~~~--~~~p~~~~ 518 (719)
..|+..|+. .++.-+-..|-..+|+..+..+.... +|+...|..+|..= ..+| +.-+..+++.| .+..|+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 467777653 45666777888889999998888542 56778888887653 2334 66777777777 23368888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc-cCCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLD-LEPD 548 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 548 (719)
|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 88888887788888887777777664 5554
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.45 E-value=90 Score=35.03 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcc
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 192 (719)
++...|+.+.-.|++++|..+.-.|...+..-|---+.-+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44455555555556666655555555555555555555555554443
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.08 E-value=2.5 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=18.6
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 047480 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAH 164 (719)
Q Consensus 134 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 164 (719)
++++.. +.+...|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334443 455667777777777777777664
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.19 E-value=11 Score=26.34 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKSAGY 628 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 628 (719)
...++-++.+.|++++|.+..+.+.+. +|...+.......+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778889999999999999999863 34445555555667777877773
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.12 E-value=11 Score=34.50 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCc--ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-h------h
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNN--FTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD-L------F 145 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~------~ 145 (719)
.|..+..-|.+.|+.++|++.|.++...... |.. ..+..+++.+.-.+++..+......+...--... . .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566667777777777777777777665433 322 2445566666666677666666555544321111 1 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccC
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGS 170 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~ 170 (719)
+|..|.. ...+++..|.+.|-..
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHcc
Confidence 2222222 2346677766666543
No 312
>PRK12798 chemotaxis protein; Reviewed
Probab=80.02 E-value=80 Score=32.84 Aligned_cols=181 Identities=13% Similarity=0.176 Sum_probs=119.1
Q ss_pred cCChHHHHHHHhcCCCC--CCChhcHHHHHHHH-HhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHH
Q 047480 394 CGSIDTALSVFYKIPKN--LKTVSLFNSIISGL-AQHGLGETSIAVFREMELMGLKPDG----VTFVTVLCACSHGGLVE 466 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 466 (719)
.|+.++|.+.+..+... ++....+-.|+.+- ....++.+|+++|++..- ..|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999988765 55666788887764 456689999999998875 35544 34555566678899999
Q ss_pred HHHHHHHHHH-HcCCccChhHHH-HHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047480 467 EGKQFFESML-NYGIKPQMEHYG-CMVDLLARD---GRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQK 541 (719)
Q Consensus 467 ~a~~~~~~m~-~~g~~p~~~~~~-~li~~~~~~---g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (719)
++..+-..-. ++.-.|-...|. .++..+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9877766555 444444433332 233333333 34455556666664222345788888888899999999999999
Q ss_pred HhccCCCCchhHHHHHHHHh-----hcCChHHHHHHHHHHH
Q 047480 542 LLDLEPDHGAHYVLLSNMLA-----ETYRWEEARQVRKLMD 577 (719)
Q Consensus 542 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~ 577 (719)
++.+... ...-...+..|. -....++|.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9987643 233334444442 2345666666655543
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.42 E-value=3.4 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677899999999999999999988765
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.25 E-value=5.7 Score=39.26 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCC
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR 499 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 499 (719)
..-|.++|.+++|++.|..-.. +.| |.+++..-..||.+...+..|..-....+... ...+.+|.|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 3459999999999999998776 467 88999988899999988887776666655321 234556666554
Q ss_pred -------HHHHHHHHHhC-CCCCCHH
Q 047480 500 -------LDEAYGLIQSM-PYDANSV 517 (719)
Q Consensus 500 -------~~eA~~~~~~~-~~~p~~~ 517 (719)
..||.+=++.. .++|+..
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 44444444333 4566643
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.95 E-value=57 Score=30.51 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-hHHHHHH--HHHhcCChhHHHHHHHHhHhc
Q 047480 274 GMSKS-TAAWSSMISGYTREGKIERARQLFDQMDQRDLV-SWTAMIS--GYSQVGGFSQALELFGKMESL 339 (719)
Q Consensus 274 ~~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 339 (719)
.+.|+ +.++|-|.-.+...|+++.|.+.|+...+-|.. -|..+=. ++---|++.-|.+-|.+.-+.
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 44555 467888888888888888888888888774432 2222211 223356777777766666554
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.93 E-value=2.7 Score=36.80 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 047480 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297 (719)
Q Consensus 218 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 297 (719)
..+.+.+.+....++++.+.+. +...+....+.++..|++.+..+....+++.... .-...+++.+.+.|.+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~--~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~----yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKE--NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN----YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHT--STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS----S-CTHHHHHHHTTTSHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhc--ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc----cCHHHHHHHHHhcchHHH
Confidence 3344444444444455555543 3334455566666666666665666655553211 222344455555555555
Q ss_pred HHHHHhhcC
Q 047480 298 ARQLFDQMD 306 (719)
Q Consensus 298 A~~~f~~m~ 306 (719)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 555555443
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.51 E-value=12 Score=29.77 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=46.2
Q ss_pred CchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHH-HhCCCCChhHHHHHHH
Q 047480 88 SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHII-KFGLEFDLFIRNALIH 152 (719)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~ 152 (719)
+.-++.+-++.+...... |++....+.|+||.+.+|+..|.++++-+. +.| .+..+|..++.
T Consensus 22 D~we~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 334566667777777787 999999999999999999999999998776 444 23445655543
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.34 E-value=1.5 Score=38.43 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=58.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcch
Q 047480 114 FVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193 (719)
Q Consensus 114 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (719)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566666777777777888888776667788889999999998888888888874333 333455555666666666
Q ss_pred HHHHHHHHH
Q 047480 194 ALWLFRKMQ 202 (719)
Q Consensus 194 A~~~~~~m~ 202 (719)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666665543
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.52 E-value=4.8 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 551 AHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998875
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.25 E-value=1.2e+02 Score=33.54 Aligned_cols=248 Identities=10% Similarity=0.039 Sum_probs=122.8
Q ss_pred HHhcCChhHHHHHHHHhHh-------cCCCCChhHHHHHHHHHHccC-----ChHHHHHHHHHHHHHcCCCCChhHHHHH
Q 047480 320 YSQVGGFSQALELFGKMES-------LGIHPDEVTMVAVLRACVGLG-----ALDFGKRLHQQYIENVVFGRNIFLTTAV 387 (719)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l 387 (719)
+....+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++. .....|. |+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~-~aA~~g~-~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYT-KAAELGN-PDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHH-HHHhcCC-chHHHHHHH
Confidence 4455677888888877765 44 2233444555554432 4566777777 5555553 333322222
Q ss_pred HHHHHh-cCChHHHHHHHhcCCCCCCChhcHHHHHHHH----HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 047480 388 IDMYAK-CGSIDTALSVFYKIPKNLKTVSLFNSIISGL----AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462 (719)
Q Consensus 388 i~~y~k-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (719)
+-.... ..+...|.+.|...... -.+.+.-.+...| ....+...|..++.+..+.| .|-..--...+..+..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKA-GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 222222 23566777777776553 1222222222221 12346777888888877776 4443333344444544
Q ss_pred CcHHHHHHHHHHHHHcCCccChhHHHHHHHHH---Hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CC
Q 047480 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL---AR----DGRLDEAYGLIQSMPYDANSVIWRALLAACRLH----RN 531 (719)
Q Consensus 463 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~----g~ 531 (719)
+.++.+.-.+..+...|.+-....-..+.+.. .. ..+.+.+..++.+...+-+......|-..+..- .+
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCC
Confidence 66666666666666555332221111121111 01 124445555555554343444444444333222 24
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhc-C--ChHHHHHHHHHHHh
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET-Y--RWEEARQVRKLMDD 578 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 578 (719)
.+.|...+.++-+.. +.....++.++..- | .+..|.++++...+
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 556666665555444 44555666666321 1 15667777766654
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.23 E-value=12 Score=34.46 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=48.8
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHH
Q 047480 495 ARDGRLDEAYGLIQSMPYDA--NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD----HGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 568 (719)
.|.|+ ++|.+.|-.+.-.| +....-.-+..|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 45666665553232 3344444455566677888888888888875432 46778888888888888887
Q ss_pred HH
Q 047480 569 AR 570 (719)
Q Consensus 569 A~ 570 (719)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.22 E-value=33 Score=27.56 Aligned_cols=87 Identities=15% Similarity=0.034 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHC
Q 047480 125 FKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS 204 (719)
Q Consensus 125 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 204 (719)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|....+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555444311 222323334456678999999999999999999999888664 566666677777777766
Q ss_pred CCCCChhhHHH
Q 047480 205 CIQPDAFTFVA 215 (719)
Q Consensus 205 g~~pd~~t~~~ 215 (719)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.12 E-value=5 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=24.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
+.-|+.+.|+++.|.+..+.+++++|++..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 345688999999999999999999999853
No 324
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.77 E-value=57 Score=29.35 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHHc
Q 047480 195 LWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG-LMNMAERVFSTM 273 (719)
Q Consensus 195 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~a~~~~~~~ 273 (719)
++.++.+.+.++.|+...+..+++.+.+.|....-.++...- -++++..+.-.|++.-.+.. -.+-+.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~-----Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH-----VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc-----ccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 344555556677777777777777777777655544443321 23333333333333222110 133344444444
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKM 336 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (719)
+. .+..+++.+...|++-+|.+..+....-+.+....++.+-.+.++...-..+|+-.
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 31 23445556666677777777766654444444455555555555544444444333
No 325
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.40 E-value=98 Score=34.35 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCC--CHHHHHHHHHHH--HhcCChhHHHHH
Q 047480 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR-DGRLDEAYGLIQSMPYDA--NSVIWRALLAAC--RLHRNAKIGEIA 538 (719)
Q Consensus 464 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~--~~~g~~~~a~~~ 538 (719)
+.+.|..++....+.| .|+....-......+. ..+...|.++|......- +...+.++.-.. ....+.+.|...
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 3445666665555544 2333332222222222 123455666665553221 222222211111 122356677777
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhCCCC
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAET-YRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 582 (719)
+.++-+..+ +.+...++..+.-. ++++.+.-....+.+.|.+
T Consensus 387 ~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 387 YKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 777766663 23333333333211 6777776666666666553
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.33 E-value=20 Score=28.60 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~ 492 (719)
.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+... +.|. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34556666677777789999999999999999999999999999887 5442 4456666553
No 327
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.18 E-value=1.8e+02 Score=34.72 Aligned_cols=183 Identities=10% Similarity=-0.045 Sum_probs=73.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
++..+-.+.++.+...+.- ....+...+.. +|...-...+.++.+.+..+. +.... -.+|...-.....+
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D--~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~a 765 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGD--PDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKG 765 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcC--CCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHH
Confidence 4444444455554433211 11223333333 455444445555554443321 11122 13344433444444
Q ss_pred HhccCcHHH-HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047480 459 CSHGGLVEE-GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 459 ~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
+...+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+-..+|..+=..-+.++...+. +++..
T Consensus 766 L~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 444443221 2233333331 345555556666666666544443333333223444333444444444443 23334
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+..+++ +| +...-...+.++.+...-.++...+....
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3333332 22 22333344444444322233444444333
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.85 E-value=54 Score=28.67 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=40.1
Q ss_pred ccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~ 528 (719)
..++.+++..+++.|.. +.|+ ...-..-...+.+.|+++||..+|++....+ ....-..|+.-|..
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 46777777777777764 2344 2222233455677888888888888885433 43444455555543
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.85 E-value=18 Score=29.09 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHH
Q 047480 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492 (719)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~ 492 (719)
+..+-+..+....+.|+.....+.|.||.+.+++..|.++|+... +.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 455555666667788999999999999999999999999999888 554 33337776654
No 330
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.10 E-value=1.9 Score=42.71 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=67.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
..|.+++|++.+... +..| ....+.--.+++.+.++...|++-+..+++++|+...-|-.-..+....|.|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456688888887765 4444 33444444455777788888888888889999988888888888888889999999988
Q ss_pred HHHHhCCCCCCC
Q 047480 574 KLMDDSGIQKPP 585 (719)
Q Consensus 574 ~~m~~~~~~~~~ 585 (719)
....+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888887765443
No 331
>PRK09687 putative lyase; Provisional
Probab=75.08 E-value=92 Score=30.95 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 355 (719)
.++..+....+.++.+.|+......+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4455555556666666665433333333333333 122445555555553 466666665543 23544444444443
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.67 E-value=4.1 Score=24.59 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667889999999999999999998764
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.27 E-value=1.7e+02 Score=33.62 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=108.0
Q ss_pred HhcCChHHHHHHHhcCCCC--CCC-------hhcHHHHHHH-HHhCCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 047480 392 AKCGSIDTALSVFYKIPKN--LKT-------VSLFNSIISG-LAQHGLGETSIAVFREMELM----GLKPDGVTFVTVLC 457 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~~~--~~~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 457 (719)
....++++|..+..+.... .++ ...|+++-.. ....|++++|+++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888877665432 122 1246666443 44578889999988877653 12334455666667
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH-----HHHHhcCCHHHH--HHHHHhC-----CCCC----CHHHHHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV-----DLLARDGRLDEA--YGLIQSM-----PYDA----NSVIWRA 521 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~eA--~~~~~~~-----~~~p----~~~~~~~ 521 (719)
+..-.|++++|..+.++..+..-.-+..++.... ..+..+|+...| +..+... +.+| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777899999998888776432234444444332 335566743322 2222222 1222 1233444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc----cCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLD----LEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
++.++.+ .+.+..-+...++ ..|... ..+..|+..+...|+.++|...++.+..-...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 4444332 4444444444443 223221 12347888999999999999999998765443
No 334
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.01 E-value=2.8e+02 Score=35.94 Aligned_cols=309 Identities=11% Similarity=0.047 Sum_probs=171.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHc-CCC----CchHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhhHHHHHHHHHhcCC
Q 047480 252 AVINMYAKCGLMNMAERVFSTM-GMS----KSTAAWSSMISGYTREGKIERARQLFDQ-MDQRDLVSWTAMISGYSQVGG 325 (719)
Q Consensus 252 ~li~~y~~~g~~~~a~~~~~~~-~~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~ 325 (719)
.|..+=.+|+.+..|...+++. +-+ .....+-.+...|+.-+++|...-+... ...+++ ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 3445556777777787777773 111 1223344455578888888777766662 333332 334555677899
Q ss_pred hhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhcCChHHHHHHH
Q 047480 326 FSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT-AVIDMYAKCGSIDTALSVF 404 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~y~k~g~~~~A~~~~ 404 (719)
+..|...|+++.+.+ ++...+++.++......+.++...-..+ ..... .++...-++ .=+.+--+.++++.-+...
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~d-g~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLD-GLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhc-chhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999998764 3346778888877777777776665444 22211 122222222 2244446677777666655
Q ss_pred hcCCCCCCChhcHHHH-H-HHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH--------
Q 047480 405 YKIPKNLKTVSLFNSI-I-SGLAQHG--LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFF-------- 472 (719)
Q Consensus 405 ~~~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~-------- 472 (719)
. . .+..+|.+. + ....+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.
T Consensus 1542 ~---~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1542 S---D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred h---c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHH
Confidence 5 3 556666665 2 2222222 2222223444443321111 22333333222222111
Q ss_pred --HHHH-HcCCccChhH------HHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhH
Q 047480 473 --ESML-NYGIKPQMEH------YGCMVDLLARDGRLDEAYGLIQSM----PYDAN-----SVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 473 --~~m~-~~g~~p~~~~------~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~ 534 (719)
.... ..++.++..+ |..-+..=....+..|-+--+++. ..+|+ ..+|-.....++..|..+.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111 1223333221 111111111111222222222221 12222 3578888889999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
|..+.-.+.+..+ +..+.-.+..+...|+-..|..++++-.+...
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999888888775 57899999999999999999999998876544
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.98 E-value=14 Score=29.78 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
+..+-++.+....+. |++....+.|++|.+.+++..|.++++-+...- .....+|..++.
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLV-PEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccC-CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 555666667777777 899999999999999999999999998776442 233336665554
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.86 E-value=6.5 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=16.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
+++.+...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666666543
No 337
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=73.86 E-value=1e+02 Score=30.91 Aligned_cols=127 Identities=15% Similarity=0.210 Sum_probs=63.9
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHc--c----CChHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCh--
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVG--L----GALDFGKRLHQQYIENVVF--GRNIFLTTAVIDMYAKCGSI-- 397 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~y~k~g~~-- 397 (719)
+.+.+++.|.+.|..-+..++.+....... . .....+..+|+.+-.++.+ .++...+.+|+.+ ..+++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666777766666666554333332 1 1244666777733333332 2233333334322 22222
Q ss_pred --HHHHHHHhcCCCC---CCChhcHHHHHHHHHh-CCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 398 --DTALSVFYKIPKN---LKTVSLFNSIISGLAQ-HGL--GETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 398 --~~A~~~~~~~~~~---~~~~~~~~~li~~~~~-~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
+.++..|+.+.+. ..|..-+.+-+-++.. ... ...+.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3444555554442 2333333333323222 111 457889999999999988877665443
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.80 E-value=6 Score=22.98 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=9.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 047480 554 VLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
..++..|...|++++|...++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444333
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.79 E-value=13 Score=36.44 Aligned_cols=95 Identities=8% Similarity=0.113 Sum_probs=72.0
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEH 486 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 486 (719)
..+.+-..++..-.+..++++++..+-+++... ..|+. +|+..++.. -++++++.+...=+.+|+-||..+
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhh
Confidence 445556666666677888999999988887531 23333 344444332 367788888888889999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
++.++|.+.+.+++.+|..+...|
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999999988776
No 340
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.55 E-value=1.6e+02 Score=33.11 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCc-------chHHHHHHHHHHCCCCCChh
Q 047480 149 ALIHFYSIFGYINNAHKVFEGSL---ARDLVSYNTLINGYAQVKEP-------CPALWLFRKMQDSCIQPDAF 211 (719)
Q Consensus 149 ~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~pd~~ 211 (719)
++|-.+.|||++++|.++..+.. .+....+-..+..|..+.+- +....-|++..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 46667789999999999883322 23445667777777765332 24444555555443333554
No 341
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.22 E-value=16 Score=31.10 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHhc-cCCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 531 NAKIGEIAGQKLLD-LEPDHG-AHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 531 ~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++.+++.+++.+++ -.|... .....|+-.+.+.++++.+.++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555666666664 333222 1223444556666666666666666654
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.65 E-value=5.6 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.012 Sum_probs=20.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
+..++...|+.++|...++++++..|++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3445666788888888888888877763
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.62 E-value=68 Score=30.43 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHhccCCCCc
Q 047480 530 RNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~ 550 (719)
.+.-.+..++++-.+++|.-.
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccc
Confidence 455566677777777888643
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.28 E-value=8.7 Score=22.02 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHh
Q 047480 283 SSMISGYTREGKIERARQLFD 303 (719)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~ 303 (719)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555544
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.18 E-value=15 Score=35.70 Aligned_cols=58 Identities=16% Similarity=-0.048 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
-...+|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++.+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3345688999999999999999999999999999999999999998888888777753
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.09 E-value=30 Score=31.95 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHHhcCChHH
Q 047480 192 CPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCV-GSNMLLKTAVINMYAKCGLMNM 265 (719)
Q Consensus 192 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~ 265 (719)
++|++.|-.+...+.--| ...-..|..+-...+.+.+.+++-.+.....+- .+|+.++.+|++.|.+.|+++.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 456666666665553333 333333333334556666666666665542222 3344444444444444444433
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.26 E-value=1.4e+02 Score=30.86 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=50.0
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHHh
Q 047480 515 NSVIWRAL---LAACRLHRNAKIGEIAGQKLLDLEPD-HGAHYVLLSNMLA-ETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 578 (719)
|-..|.++ +....+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455554 45578889999999999999999999 8887778888775 77788777777776654
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.74 E-value=33 Score=35.85 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH
Q 047480 446 KPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALL 523 (719)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll 523 (719)
.|+.+-+.+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|..+-..| +.+ .++.+...-.
T Consensus 322 ~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa 398 (831)
T PRK15180 322 DPVLIQLRSVI--FSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA 398 (831)
T ss_pred CchhhHHHHHH--HHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence 44444433333 3455555555555444331 12233445555555555556666655555544 100 0122222222
Q ss_pred HHHHhcCChhHHHHHHHHHhccCC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
......|-++++...+++++.++|
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhccCC
Confidence 223444555555555565555554
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.40 E-value=1.1e+02 Score=29.08 Aligned_cols=14 Identities=0% Similarity=-0.237 Sum_probs=6.2
Q ss_pred CChhHHHHHHHHHh
Q 047480 530 RNAKIGEIAGQKLL 543 (719)
Q Consensus 530 g~~~~a~~~~~~~~ 543 (719)
+++.+|+.+|+++.
T Consensus 168 eqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 350
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.87 E-value=1.7e+02 Score=32.75 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCCh----------hHHHHHHHHHHccCChHHHHHHHHHHHHHcC-CCCCh
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDE----------VTMVAVLRACVGLGALDFGKRLHQQYIENVV-FGRNI 381 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~ 381 (719)
-..++-.|....+++..+++.+.+... ||. +.|.-.++---+-|+-++|..+.-.++++.| +.|
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap-- 278 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP-- 278 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC--
Confidence 445566677777888888888877652 322 1233333333345666777766554555544 222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV---TFVTVLCA 458 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a 458 (719)
++||-||++- ..|- +-+.|...+..+.|.+.|++.-+ +.|+.. -+..|+.+
T Consensus 279 -------Dm~Cl~GRIY------KDmF-----------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 -------DMYCLCGRIY------KDMF-----------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred -------ceeeeechhh------hhhh-----------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 4566666542 2221 11223444556677777877766 577664 34444443
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 538 (719)
-.+ .++...+ +..-| ..|-.+++|.|.++.-.++++-. +.+.+-.-.+++.+|.++
T Consensus 333 aG~--~Fens~E----lq~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 333 AGE--HFENSLE----LQQIG--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhh--hccchHH----HHHHH--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 222 1111111 11111 23446678888888777766532 234445556788899999
Q ss_pred HHHHhccCCCC
Q 047480 539 GQKLLDLEPDH 549 (719)
Q Consensus 539 ~~~~~~~~p~~ 549 (719)
.++++++.|..
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999998864
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.81 E-value=94 Score=28.02 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHhcCChHHHHHHHhcCCCCCCChhcHH---HHHH--HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 047480 391 YAKCGSIDTALSVFYKIPKNLKTVSLFN---SIIS--GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~~~~~~~~~---~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (719)
....|+...|...|+++....+-+.... .+=. .+..+|-+++.....+-+-..+-+.-...-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 3445666666666666544311111111 1111 2345666666666555554433222223334455555677777
Q ss_pred HHHHHHHHHHH
Q 047480 466 EEGKQFFESML 476 (719)
Q Consensus 466 ~~a~~~~~~m~ 476 (719)
..|.+.|..+.
T Consensus 184 a~A~~~F~qia 194 (221)
T COG4649 184 AKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHHHHH
Confidence 77777777766
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.81 E-value=19 Score=34.02 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 498 GRLDEAYGLIQSM-PYDANSVI-WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 498 g~~~eA~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.+++.|+.-+.+. ...|...+ |..=+-.+.+..+++.+..-..+++++.|+..-....++........+++|+..+..
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445555544433 45676644 444444456677888888888888888888888888888888888888888888887
Q ss_pred HHh
Q 047480 576 MDD 578 (719)
Q Consensus 576 m~~ 578 (719)
..+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 743
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.65 E-value=1.8e+02 Score=32.85 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=35.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCccChhHHHHHHHHHHh---c
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQMEHYGCMVDLLAR---D 497 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~---~ 497 (719)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+ ..-..+... .-.|..-.+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~---~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSD---SSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCC---ccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 444567888888887766 2233455566655554433222211 111333311 011222556677777765 3
Q ss_pred CCHHHHHHHHHhCC
Q 047480 498 GRLDEAYGLIQSMP 511 (719)
Q Consensus 498 g~~~eA~~~~~~~~ 511 (719)
.+..+|.+++--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777776654
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.65 E-value=24 Score=33.42 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCHHHHHHH-----------HHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 493 LLARDGRLDEAYGLIQSM---------PYDANSVIWRAL-----------LAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~---------~~~p~~~~~~~l-----------l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
-+.+.|++.||..-++++ ..+|...-|--| -..+...|++-++++....++...|++..+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556665555544432 345555545332 223456788889999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
|+.-+.+.+..=+.++|..-+....+.
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 999999998888888998888887753
No 355
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.42 E-value=11 Score=39.33 Aligned_cols=86 Identities=17% Similarity=0.073 Sum_probs=60.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDANSVIWRALL-AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (719)
-+...+.++.|..++.++ ..+||-..|-+.- .++.+.+++..|..-+.++++++|.....|+.-+.++.+.+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344556666676666655 4566555443333 55677778888888888888888887778888888888888888888
Q ss_pred HHHHHHHh
Q 047480 571 QVRKLMDD 578 (719)
Q Consensus 571 ~~~~~m~~ 578 (719)
..++....
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 77776543
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.95 E-value=17 Score=28.79 Aligned_cols=45 Identities=20% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 536 EIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+..+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345667777888888888888889999999999988888877653
No 357
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=65.10 E-value=1.7e+02 Score=30.09 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHhcc---CCCC---
Q 047480 488 GCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRAL------------LAACRLHRNAKIGEIAGQKLLDL---EPDH--- 549 (719)
Q Consensus 488 ~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~---~p~~--- 549 (719)
..|...+-.+|++++|.+++.+.+.+ ||+++ +.-|...+|+-.|.-+.+++... +|+-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 35677888899999999999887633 22222 34577888888888887777542 2221
Q ss_pred -chhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEe
Q 047480 550 -GAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600 (719)
Q Consensus 550 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 600 (719)
-..|..++....+.+.+=++.+.++..-+-|-.+...--|+.+-..+-.|+
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 135888999999999999999999999887766654445766544444454
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.47 E-value=24 Score=32.88 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 487 YGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 487 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
.+.-+..+.+.+++++|+...+.- +.+| |...-..|+.-++..|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566778888899988887653 4556 555666777888899999999998888888888754
No 359
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.40 E-value=1.8e+02 Score=30.11 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC----CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN----LKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
...-+.+-|..||+++.|.+.|.+..+. ...+..|-.+|..-...|++.....+-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456788899999999999999986553 12233566666666667777776666666554
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.95 E-value=2.2e+02 Score=30.53 Aligned_cols=162 Identities=9% Similarity=0.071 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHG 462 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (719)
-.-++++.++..-...-.+.+-.+|.....+-..|-.++..|.++ ..++-..+|+++.+. --|.+.+..-+.-+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHH
Confidence 334455555555555555555555544334555666666666666 455666666666664 23344444333333344
Q ss_pred CcHHHHHHHHHHHHHcCCccC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCh
Q 047480 463 GLVEEGKQFFESMLNYGIKPQ------MEHYGCMVDLLARDGRLDEAYGLIQSM----PYDANSVIWRALLAACRLHRNA 532 (719)
Q Consensus 463 g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~ 532 (719)
++.+.+..+|..+... +.|. .+.|..|...-+ .+.+..+.+..++ +...-.+.+.-+-.-|....|+
T Consensus 145 ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 6666666666666522 2221 223444433221 2333444444333 1222233344444455566666
Q ss_pred hHHHHHHHHHhccCCCCc
Q 047480 533 KIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~ 550 (719)
++|+++...+++.+..+.
T Consensus 222 ~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 222 TEAIRILKHILEHDEKDV 239 (711)
T ss_pred HHHHHHHHHHhhhcchhh
Confidence 667666666666555443
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.73 E-value=26 Score=31.71 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 047480 432 TSIAVFREMELMGLKPDG-VTFVTVLCACSHG 462 (719)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 462 (719)
+|+.-|++.+. +.|+. .++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 33444444443 56665 3666666665543
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.11 E-value=27 Score=37.44 Aligned_cols=100 Identities=14% Similarity=-0.008 Sum_probs=69.6
Q ss_pred ccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 047480 461 HGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
..|+...|...+..+. ....+. ......|...+.+.|...+|-.++... . ....+.++-++..++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 4678888888877766 222222 233445677777888888888877654 2 12345567777778888899999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHh
Q 047480 538 AGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
.++++++++|+++..-..|..+-+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999998877666554433
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.68 E-value=97 Score=33.71 Aligned_cols=132 Identities=13% Similarity=0.065 Sum_probs=84.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC
Q 047480 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH 427 (719)
Q Consensus 348 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 427 (719)
-+.+..-+.+.|..++|.++-. .|+. -.+...+.|+++.|.++..+. .+..-|..|..+..+.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~--------D~d~-----rFelal~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELST--------DPDQ-----RFELALKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCC--------Chhh-----hhhhhhhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhc
Confidence 3445555666666666655432 2221 223455778888888876655 4566799999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
|+...|.+.|.+... |.+|+-.+...|+-+....+-....+.|. .|.-.-+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 999999988887654 34566666777776544444444444441 233344567788888888888
Q ss_pred HhCC
Q 047480 508 QSMP 511 (719)
Q Consensus 508 ~~~~ 511 (719)
.+-.
T Consensus 745 i~t~ 748 (794)
T KOG0276|consen 745 ISTQ 748 (794)
T ss_pred HhcC
Confidence 7653
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.23 E-value=75 Score=27.77 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=42.0
Q ss_pred CChhhHHHHHHHHHcCCC-cchHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 047480 173 RDLVSYNTLINGYAQVKE-PCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223 (719)
Q Consensus 173 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 223 (719)
.+-.+|+.++.+.++..- ---+..+|..|++.+.+++..-|..++++|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 366789999999877665 445788999999988999999999999998764
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.18 E-value=17 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
.|..+...+...++.+.|...+++.++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667777788999999999999999988773
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.13 E-value=17 Score=24.28 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 554 VLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 458889999999999999999988543
No 367
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.36 E-value=15 Score=21.83 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=21.9
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHH
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSN 558 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (719)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888888877777766654
No 368
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.33 E-value=1.1e+02 Score=33.05 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhc---HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL---FNSIISGLAQHGLGETSIAVFREMELM 443 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 443 (719)
..|+.-|.+.+++++|..++..|.=....... .+.+.+.+.+..-..+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35777899999999999999888643112222 333344444444344555555555543
No 369
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.56 E-value=3.4e+02 Score=31.31 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchH
Q 047480 117 NSCARLSSFKSGCQIHCHIIKFGLEFDL--FIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPA 194 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 194 (719)
+.|...|+++.|.++-+. .|+. .++..-.+.|...+++..|.+++-++ ..++..+.--+....+.+ +
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-H
Confidence 344455666666554321 1221 13333345566667777777777665 344555554555555544 5
Q ss_pred HHHHHHHHHCCCCCChhh
Q 047480 195 LWLFRKMQDSCIQPDAFT 212 (719)
Q Consensus 195 ~~~~~~m~~~g~~pd~~t 212 (719)
+..|-.=+-..++|...+
T Consensus 435 L~~~L~KKL~~lt~~dk~ 452 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKT 452 (911)
T ss_pred HHHHHHHHHhhCChHHHH
Confidence 554433333345554443
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.49 E-value=2.3e+02 Score=29.37 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=66.4
Q ss_pred CHHHHHHH---HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------
Q 047480 448 DGVTFVTV---LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA-RDGRLDEAYGLIQSMPY--DAN------ 515 (719)
Q Consensus 448 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~eA~~~~~~~~~--~p~------ 515 (719)
|...|.++ +..+.+.|-+..|.++.+-+......-|+.....+||.|+ ++++++--+++.+.... ..+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44444444 4567788999999999998887654446777777788876 78888888888876532 111
Q ss_pred HHHHHHHHHHHHhcCCh---------------hHHHHHHHHHhccCCC
Q 047480 516 SVIWRALLAACRLHRNA---------------KIGEIAGQKLLDLEPD 548 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~~~p~ 548 (719)
...|+.-+.-+. .++. +.|...+.+++...|.
T Consensus 179 n~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 179 NFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 233444443333 3444 7888888888887773
No 371
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.48 E-value=37 Score=33.34 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=28.9
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
++.|+.|+|..+|+.++.+.|+++....-++.......+.-+|-..+-+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 4556666666666666666666666666555555555555555544443
No 372
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.37 E-value=49 Score=31.30 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCC--C----CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 534 IGEIAGQKLLDLEP--D----HGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 534 ~a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.|...|+++++.+. . .......++.++.+.|+.++|.+.|..+...+
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44555555554332 1 23466788999999999999999999988643
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.91 E-value=70 Score=26.37 Aligned_cols=27 Identities=7% Similarity=0.315 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388899999999999999999988876
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.56 E-value=1e+02 Score=32.42 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=90.4
Q ss_pred ccCcHHHH-HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 047480 461 HGGLVEEG-KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 461 ~~g~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
..|++-.| .+++..+..+.-.|+. .......+...|+++.+.+.+.... +.....+...++......|+.++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555544 4556655554334543 3333455677899999999998762 33355667777888788899999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEe
Q 047480 538 AGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFL 600 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 600 (719)
..+.++.-+-.+++....-+..-...|-++++...++.....+...+.| |+..-.....|-
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~ 439 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFN 439 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceecc
Confidence 9999998776666665555555556788999999999987655444444 444433333443
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.12 E-value=51 Score=25.78 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHH
Q 047480 24 ALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEAL 93 (719)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 93 (719)
...+++..+..|+-..-..+.+-.+=-. . |+.+.|+++.+.++ +....|..+++++...|.-.-|-
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~--~-g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATEN--H-GNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccc--c-CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4556666666665432222222222223 4 78888888888888 77778888888888877655443
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.80 E-value=1.7e+02 Score=30.67 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=34.5
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGV--TFVTVLCACS--HGGLVEEGKQFFESMLN 477 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 477 (719)
+-..+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888888888876 555554 3334444433 35667788888887664
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.59 E-value=37 Score=25.97 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=25.1
Q ss_pred ccCcHHHHHHHHHHHHHcCCc-cC-hhHHHHHHHHHHhcCCHHHHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIK-PQ-MEHYGCMVDLLARDGRLDEAYGL 506 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~eA~~~ 506 (719)
+....++|+..|...++.-.. |+ -.++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666632212 22 23555666666666666666554
No 378
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=55.54 E-value=68 Score=26.80 Aligned_cols=60 Identities=17% Similarity=0.044 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH-------hccCCCCchhHH----HHHHHHhhcCChHHHHHHHHHHH
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKL-------LDLEPDHGAHYV----LLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.+..|-.++...|++++++...+++ -+++.+....|+ .-+.++...|+.+||.+.|+...
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3444444555555555555444444 356666544444 34456778899999998887643
No 379
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.35 E-value=58 Score=32.59 Aligned_cols=91 Identities=21% Similarity=0.135 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-P---YDA--NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
+|.-=.+-|.+..++..|...|.+- . -.| +.+.|+.=..+-...||+..++.-..+++.++|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3334456678888999999998775 1 223 456677766777778999999999999999999999999988888
Q ss_pred HhhcCChHHHHHHHHHH
Q 047480 560 LAETYRWEEARQVRKLM 576 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m 576 (719)
+....++.+|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877777666554
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.53 E-value=1.3e+02 Score=29.44 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=55.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH---
Q 047480 421 ISGLAQHGLGETSIAVFREMEL--MGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA--- 495 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--- 495 (719)
|.+++..+++.+++...-+--+ ..++|...-...++ |++.+.+....++-..-....-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6777788888877664332221 22455544444444 8888888888877776663222233445777777665
Q ss_pred --hcCCHHHHHHHHHhC
Q 047480 496 --RDGRLDEAYGLIQSM 510 (719)
Q Consensus 496 --~~g~~~eA~~~~~~~ 510 (719)
-.|.++||++++..-
T Consensus 168 LlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVGS 184 (309)
T ss_pred HhccccHHHHHHHHhcC
Confidence 469999999988543
No 381
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.67 E-value=1.7e+02 Score=26.44 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChh-HHHHH--HHHHHhcCC
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQME-HYGCM--VDLLARDGR 499 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~ 499 (719)
+++.+..++|+.-|..+.+.|..--.+ .-..........|+...|...|+++-.-.-.|... -..-| .-++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 355677778888888777766443322 22233334567788888888888777322233321 11111 234567788
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 500 LDEAYGLIQSMPYDAN---SVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 500 ~~eA~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+++...-++.+..+.+ ...-.+|.-+-.+.|++..|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8887777776632222 22334455556677888888888877765
No 382
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.61 E-value=1.2e+02 Score=24.84 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHH
Q 047480 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202 (719)
Q Consensus 123 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (719)
...++|..|.+.+...+- ....+.-..+..+...|++++|...=.....||...|-+|-. .+.|-..++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456777777777776653 333333344555678899999966556677789999987765 46777777777777776
Q ss_pred HCC
Q 047480 203 DSC 205 (719)
Q Consensus 203 ~~g 205 (719)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.40 E-value=2.1e+02 Score=27.34 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHHHHH--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHH
Q 047480 417 FNSIISGL--AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494 (719)
Q Consensus 417 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 494 (719)
|...+.|+ ..++++++|++++-+- .+.|+... -++.++...|+.+.|..+++.+.-. -.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 44445543 4456666666665221 12222221 3455555567777777776654310 1112222333333
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047480 495 ARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL 528 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 528 (719)
..+|.+.||..+.+..+.+-....|..++..|..
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 4557777777777766432223466666666543
No 384
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.78 E-value=1.5e+02 Score=27.55 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=47.4
Q ss_pred hccCcHHHHHHHHHHHHHcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCh
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQ-----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VIWRALLAACRLHRNA 532 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~ 532 (719)
...|++++|..-|..++.. +++. ...|..-..++.+.+.++.|++-..+. .+.|.. -....-..+|.+...+
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3445555555555555532 1111 122333344555666666666554443 233321 1111222346667788
Q ss_pred hHHHHHHHHHhccCCCC
Q 047480 533 KIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~ 549 (719)
+.|+.-++++++.+|..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 88999999999999875
No 385
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.76 E-value=4.2e+02 Score=30.62 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=115.7
Q ss_pred HHHHHHhcCChHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 047480 253 VINMYAKCGLMNMAERVFSTMGMSKST--AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330 (719)
Q Consensus 253 li~~y~~~g~~~~a~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 330 (719)
+=..|...|+++.|.+..+. .|+. .++..-.+.|...+++..|.+++-++. .++..+.--+....+.+ ++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~---~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L 435 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART---RPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-AL 435 (911)
T ss_pred HHHHHHhcchHHHHHHhccC---CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HH
Confidence 34567788899998887643 3443 355566677888889999999988874 33444444455555544 44
Q ss_pred HHHHHhHhcCCCCChhHHHH-----HHHHH-HccCChH----HHHHHHHH--------HHHHcCCCCChhHHHHHHHHHH
Q 047480 331 ELFGKMESLGIHPDEVTMVA-----VLRAC-VGLGALD----FGKRLHQQ--------YIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 331 ~~~~~m~~~g~~p~~~t~~~-----ll~a~-~~~~~~~----~a~~~~~~--------~~~~~~~~~~~~~~~~li~~y~ 392 (719)
..|-.=+-..++|...+=.. ++..+ .+.++++ .+..-+.. .+.......+.....+......
T Consensus 436 ~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~ 515 (911)
T KOG2034|consen 436 RTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLA 515 (911)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 44432222234444433222 22222 2222222 22221110 1111111122223344445555
Q ss_pred hcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC----CC-------C--------------
Q 047480 393 KCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG----LK-------P-------------- 447 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-------p-------------- 447 (719)
..|+.+....+-.-+.+ |..++.-+.++|.+++|++++..-.... +. |
T Consensus 516 ~~~~~e~ll~fA~l~~d-------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~ 588 (911)
T KOG2034|consen 516 SHGRQEELLQFANLIKD-------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDLD 588 (911)
T ss_pred HccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHccccC
Confidence 56666665555444433 5666666777777777777665421100 00 1
Q ss_pred CHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 448 DGVTFVTVLCACSHGG---LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 448 ~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
...-...++.-+.+.+ ....+..+.+.-...--.-+...+|.++..|++.-+-
T Consensus 589 ~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 589 PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 1112234444444442 2334444444444222244567778888887765543
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.60 E-value=3.9e+02 Score=30.16 Aligned_cols=48 Identities=15% Similarity=-0.055 Sum_probs=34.7
Q ss_pred HhcCChhHHHHHHHHHhccC---CC------CchhHHHHHHHHhhcCChHHHHHHHH
Q 047480 527 RLHRNAKIGEIAGQKLLDLE---PD------HGAHYVLLSNMLAETYRWEEARQVRK 574 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (719)
...++...+....+.+.+.. |+ .+..+...+-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45778888888888776532 22 23456666667778899999999998
No 387
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.07 E-value=2.6e+02 Score=27.71 Aligned_cols=65 Identities=5% Similarity=-0.027 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHH---HhcCChhHHHHHHHHhHhcCCCCC
Q 047480 279 TAAWSSMISGYTREGKIERARQLFDQMDQR---DLVSWTAMISGY---SQVGGFSQALELFGKMESLGIHPD 344 (719)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~ 344 (719)
+.++-.-+....+.++.+.+.+++.+|... ....+...+..+ .. .....|...+..+....+.|.
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 344444455555566666666666666531 123344433333 22 223455555555554433433
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.55 E-value=46 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=33.6
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
...+.++|+..|+...+.-..|.. .++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888765433332 37888888888888888777653
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.76 E-value=35 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=15.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcC
Q 047480 316 MISGYSQVGGFSQALELFGKMESLG 340 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g 340 (719)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666443
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.05 E-value=43 Score=26.71 Aligned_cols=52 Identities=13% Similarity=-0.013 Sum_probs=34.4
Q ss_pred HhcCChhHHHHHHHHHhccCCCC---------chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDH---------GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.+.||+..|...+.+.++..... ..+...++.++...|.+++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566777766666665432211 12345677788899999999999888764
No 391
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.97 E-value=2.7e+02 Score=27.36 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH-------HHHHHHHHccCChH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTM-------VAVLRACVGLGALD 362 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~~~~~~~ 362 (719)
+..-.++.+++++|+..+.+....|+..|..+. ..+...|...|+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 344456778899999999999988887776543 34445555555443
No 392
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.96 E-value=2.2e+02 Score=26.33 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHHHHhcCChHHHHHHHHHc-CCCCchH----HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHhcCC
Q 047480 253 VINMYAKCGLMNMAERVFSTM-GMSKSTA----AWSSMISGYTREGKIERARQLFDQMDQRDLVS--WTAMISGYSQVGG 325 (719)
Q Consensus 253 li~~y~~~g~~~~a~~~~~~~-~~~~~~~----~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~ 325 (719)
+...+..++++++|...++.. +.+.|.. +---|.+.....|.+|+|.++++....++-.+ -..-...+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 345566777777777777765 3333322 22234456677888888888888877654333 2223356788888
Q ss_pred hhHHHHHHHHhHhcC
Q 047480 326 FSQALELFGKMESLG 340 (719)
Q Consensus 326 ~~~A~~~~~~m~~~g 340 (719)
-++|..-|.+....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888888764
No 393
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.53 E-value=1.9e+02 Score=25.39 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC---C--CCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCccChhHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMG---L--KPDGVTFVTVLCACSHGGL-VEEGKQFFESMLNYGIKPQMEHYGCM 490 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 490 (719)
.|.++.-.+..++..-.+.+++.+..-. + .-+..+|.+++.+.++... ---+..+|..+.+.+.+++...|.+|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455555555555555555555553210 0 2234567777777776665 44566777777776777777888887
Q ss_pred HHHHHhc
Q 047480 491 VDLLARD 497 (719)
Q Consensus 491 i~~~~~~ 497 (719)
+....+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766544
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.52 E-value=3.4e+02 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc
Q 047480 250 KTAVINMYAKCGLMNMAERVFSTM 273 (719)
Q Consensus 250 ~~~li~~y~~~g~~~~a~~~~~~~ 273 (719)
..-+.+.|..+|+.+.|.+.+.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 344555666666666666666554
No 395
>PRK10941 hypothetical protein; Provisional
Probab=48.10 E-value=1.1e+02 Score=30.05 Aligned_cols=65 Identities=8% Similarity=0.062 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 488 GCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 488 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
+.+-.+|.+.++++.|++..+.+ .+.| |+.-|.--.-.|.+.|....|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556677777777777777776 3444 34445555555777788888888888888877777644
No 396
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.93 E-value=2.8e+02 Score=27.19 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
.++.....+...|.+.|++.+|+..|-.-.. ++...+-.++.-....|...++ |...-..++ -
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~ 150 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD--PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-Q 150 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC--hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-H
Confidence 4567778889999999999999988866544 3333332233222222222222 122222333 3
Q ss_pred HhccCcHHHHHHHHHHHH
Q 047480 459 CSHGGLVEEGKQFFESML 476 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~ 476 (719)
|...+++..|...++...
T Consensus 151 yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 555678888887776665
No 397
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.59 E-value=1.1e+02 Score=25.13 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMES 338 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (719)
.-|..++..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999998876
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.43 E-value=1.9e+02 Score=24.92 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=44.3
Q ss_pred ccChhHHHHHHHHHHhcCCHHH---HHHHHHhC-C-CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 481 KPQMEHYGCMVDLLARDGRLDE---AYGLIQSM-P-YDANS--VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~e---A~~~~~~~-~-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
.++..+--.+..++.++.+.++ -+.++++. + ..|+. ...--|.-+|.+.++++.++++.+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4555555566677776665443 44555554 1 22321 1222334468889999999999999999999874
No 399
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.30 E-value=30 Score=39.09 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=50.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 534 (719)
+|.-+.+.|.++-|+.+.+.=. + -.++...+|+++.|++.-++.. |..+|..|......+||.+.
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHH
Confidence 3334455666666665543221 1 1234456888888888877764 77888888888888888888
Q ss_pred HHHHHHHHhc
Q 047480 535 GEIAGQKLLD 544 (719)
Q Consensus 535 a~~~~~~~~~ 544 (719)
|+..+++...
T Consensus 691 aEm~yQ~~kn 700 (1202)
T KOG0292|consen 691 AEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHhhh
Confidence 8888877643
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.53 E-value=2.7e+02 Score=26.33 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=69.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH--cCCccChhHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLN--YGIKPQMEHYGCMVD 492 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~ 492 (719)
+.+..++.+.+.+...+|+...++-++. +|. .-+-..++..++-.|++++|..-++-.-. ....+....|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455567777778888888887776664 443 34556667778888888888776665543 222333555655554
Q ss_pred HHHhcCCHHHHHHHHHhC--CC--CCCHHHHHHHH-HHH--HhcCChhHHHHHHHHHhccCCCCc
Q 047480 493 LLARDGRLDEAYGLIQSM--PY--DANSVIWRALL-AAC--RLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~--~~--~p~~~~~~~ll-~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+-.-. -++|..- |. -.....|-..+ .+. ...|.-+.....-+.+++--|..+
T Consensus 81 ~ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 81 CEAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 32111 1223221 21 11234454444 332 222344445556677777666543
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.75 E-value=30 Score=29.46 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=25.3
Q ss_pred cCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047480 187 QVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSAC 220 (719)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 220 (719)
..|.-.+|-.+|++|+..|-.||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999986 66666654
No 402
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.69 E-value=86 Score=27.34 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 047480 501 DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 501 ~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (719)
+.|.++++-|+ .....-.........|++..|.++.+.++..+|++..+-...+++|...|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45666666664 22223333344667899999999999999999999888888888887665433
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.59 E-value=64 Score=21.95 Aligned_cols=36 Identities=6% Similarity=-0.077 Sum_probs=28.3
Q ss_pred HHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047480 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSA 219 (719)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 219 (719)
-..+.|-..++..++++|.+.|+..+...|..+++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345677788888899999988988888888777653
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.59 E-value=1.6e+02 Score=23.23 Aligned_cols=62 Identities=13% Similarity=-0.075 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCCh-HHHHHHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH--GAHYVLLSNMLAETYRW-EEARQVRKLM 576 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~m 576 (719)
|....-.+...+...|+++.|...+-.+++.+|+. ...-..|+.++.-.|.- .-+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44455555666777777777777777777766543 45566666666666663 3455555554
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.94 E-value=5.2e+02 Score=28.85 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 047480 330 LELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 330 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 369 (719)
....+.....-.-.+.....-++..|.+.|-.+.+..+..
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~ 429 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICK 429 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444443223355566677777887777777777776
No 406
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.92 E-value=4.1e+02 Score=28.16 Aligned_cols=166 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhC---CC-CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 047480 90 QEALVLYTSMLSK---GI-VSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHK 165 (719)
Q Consensus 90 ~~A~~~~~~m~~~---g~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 165 (719)
++...+++..... ++ . .+......++..+ .|+...+..+++.+... .-......+.++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~-i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~~ 217 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVE-LDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEALQ 217 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHHh
Q ss_pred HHccCCCCChhhHHHHHHHHHcC---CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-----CcHHHHHHHHHHH
Q 047480 166 VFEGSLARDLVSYNTLINGYAQV---KEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN-----DPRIGKQFHAVVY 237 (719)
Q Consensus 166 ~f~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~ 237 (719)
.......++...+..+++++.+. ++++.|+..+..|.+.|..|....-..+..++-..| ....+...++...
T Consensus 218 ~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~ 297 (413)
T PRK13342 218 KRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVE 297 (413)
T ss_pred hhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Q ss_pred HhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc
Q 047480 238 KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM 273 (719)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~ 273 (719)
.. |+|.-.......+-.++.+-+-..+...+.+.
T Consensus 298 ~~--g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 298 RI--GMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred Hh--CCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 407
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.56 E-value=3.7e+02 Score=27.08 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=43.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CccChhHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLL 494 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~ 494 (719)
.-..++....++|..++-..+++.... .++...-..++.+.+...+.+...++++.....+ +.+ ..... ++..+
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~-~d~~~-~~~~~ 245 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS-QDIRY-VLAGL 245 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T-TTHHH-HHHHH
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc-HHHHH-HHHHH
Confidence 344455555556654444444444332 3355566667777777777777777777776533 332 23333 33333
Q ss_pred HhcCC--HHHHHHHHHh
Q 047480 495 ARDGR--LDEAYGLIQS 509 (719)
Q Consensus 495 ~~~g~--~~eA~~~~~~ 509 (719)
...+. .+.+.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 246 ASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp H-CSTTCHHHHHHHHHH
T ss_pred hcCChhhHHHHHHHHHH
Confidence 32333 3666666654
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.72 E-value=1.3e+02 Score=25.39 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 432 TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 432 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
+..+-+.......+.|+.......|.||.+.+++..|.++|+-.. +.| +....|-.++ ++-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH---------HHHHHHHHHh
Confidence 344455556667788999999999999999999999999999887 544 3334565554 3445555655
Q ss_pred C
Q 047480 511 P 511 (719)
Q Consensus 511 ~ 511 (719)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 409
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.58 E-value=4.5e+02 Score=27.72 Aligned_cols=56 Identities=7% Similarity=-0.091 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChh---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVS---LFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
+...+..|+.+-+.-+++.-.. ++.. ...+.+...+..|+.+ +.+.+.+.|..|+.
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga~--~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGAN--IDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCC--CCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3344555666655555554333 2211 1123333333445443 44445556666654
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.18 E-value=83 Score=29.13 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 512 YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 512 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
..|++.++..++.++...|+.++|....+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456666666666666777777777777777766666
No 411
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.00 E-value=3.9e+02 Score=30.90 Aligned_cols=131 Identities=12% Similarity=0.144 Sum_probs=88.1
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
+....||+++.|.+.-.++ .+...|..|...-...|+.+-|+-.|++... |..|--.|.-.|+.++-
T Consensus 651 ~LaLe~gnle~ale~akkl----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKL----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeehhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 3456799999999887777 5567899999999999999999998887664 22233345667888887
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
.++-..+.. .-|...- .+..+ -.|+.++-.++++..+.-|- .|. ....||.-++|.++.++.-.
T Consensus 718 ~Km~~iae~---r~D~~~~-~qnal--Yl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEI---RNDATGQ-FQNAL--YLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHh---hhhhHHH-HHHHH--HhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 766655542 1221110 11112 25888888888888764432 222 13467888889888887765
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.59 E-value=2.1e+02 Score=23.56 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH
Q 047480 283 SSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348 (719)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 348 (719)
-.-+..+...|++++|...=.....||...|-++-. -+.|..+++...+.++..+| .|....|
T Consensus 44 lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 44 LIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 334455677888888855555555688888877654 56777788888887777665 3433333
No 413
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.51 E-value=4e+02 Score=26.87 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC------CCChhcHHHHHH-HHHhCCChhHHHHHHHHHHHcCCCCCH----HH
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN------LKTVSLFNSIIS-GLAQHGLGETSIAVFREMELMGLKPDG----VT 451 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 451 (719)
..-...+.|++-|+.+.|.+.+.+.-+. ..|++.+..-+. .|..+.-..+-++..+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4445667788888888888888764331 234444433332 244455566667777777777754333 24
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
|-.+- |....++.+|-.+|-...
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 54443 344567777777776655
No 414
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.28 E-value=2.9e+02 Score=26.44 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHH
Q 047480 428 GLGETSIAVFREMELMG-LKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 504 (719)
|+++.|+++.+.+++.| ..|+.+ ++-+++ .++....-....+.|-..++.....+...-...
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~------- 161 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASAGESVEPYFLRVFLDLTTEW------- 161 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC-------
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH---------HhcCChhHHHHHHHHHhccCCC
Q 047480 505 GLIQSMPYDANSVIWRALLAAC---------RLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 505 ~~~~~~~~~p~~~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
.|+.+...-.|......+ ...++.+.|...++++++++|+
T Consensus 162 ----dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 ----DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ----CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.11 E-value=97 Score=28.68 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=17.2
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
.|+...|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555556655555555554
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.56 E-value=5.8e+02 Score=28.45 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=27.8
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 047480 299 RQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 299 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 369 (719)
..++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+.-+.+.++......+-.
T Consensus 394 ~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 394 EELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333444334444445566777777777777777766543311 12335555555566666555544444
No 417
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.34 E-value=3.5e+02 Score=25.88 Aligned_cols=139 Identities=12% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHH
Q 047480 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFG 364 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 364 (719)
-+..|++.-++.-|-..++.+.+|=. +-.+ |--|.+..+..---++.+-....+++-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQ-SRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQ-SRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHH-hhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 35566666666666666666555411 1111 111222222222222222233344444444443332 3445666666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 047480 365 KRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMG 444 (719)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 444 (719)
...++..+...| +-.+..+|.-..+ |.+.....|+..+. .++.++|.+.+.++-+.|
T Consensus 212 lNnLQst~~g~g--------------------~Vn~enVfKv~d~--PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 212 LNNLQSTVNGFG--------------------LVNQENVFKVCDE--PHPLLVKKMLQACL-KRNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHHhcccc--------------------ccchhhhhhccCC--CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC
Confidence 655552222111 1233455555555 66666666665543 456788888888877777
Q ss_pred CCCCHH
Q 047480 445 LKPDGV 450 (719)
Q Consensus 445 ~~p~~~ 450 (719)
+.|...
T Consensus 269 ysp~Di 274 (333)
T KOG0991|consen 269 YSPEDI 274 (333)
T ss_pred CCHHHH
Confidence 777554
No 418
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.82 E-value=60 Score=20.49 Aligned_cols=28 Identities=11% Similarity=-0.177 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCChhHHHHH--HHHHhccCC
Q 047480 520 RALLAACRLHRNAKIGEIA--GQKLLDLEP 547 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~--~~~~~~~~p 547 (719)
-++...+-..|+.++|+.+ ++-+..++|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3344445555666666666 334444444
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.71 E-value=1.1e+02 Score=33.58 Aligned_cols=46 Identities=11% Similarity=-0.110 Sum_probs=24.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCc
Q 047480 419 SIISGLAQHGLGETSIAVFREMELMG--LKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~ 464 (719)
++..+|..+|++..+.++++.+.... -+.=...++..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 56666666666666666666655421 11112345555555555554
No 420
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=38.50 E-value=3.4e+02 Score=26.74 Aligned_cols=86 Identities=8% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhHh--cCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047480 316 MISGYSQVGGFSQALELFGKMES--LGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 393 (719)
=|.+++..+++.+++...-+--+ ..++|... -.-|-.|++.+....+.++-+......+ ..+..-|.++++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 36777888888887766554432 22333332 2233345666666666666653333222 2223335555555543
Q ss_pred -----cCChHHHHHHH
Q 047480 394 -----CGSIDTALSVF 404 (719)
Q Consensus 394 -----~g~~~~A~~~~ 404 (719)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 35555555554
No 421
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=38.28 E-value=1.6e+02 Score=31.43 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--------CchhHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--------HGAHYV 554 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 554 (719)
++..|-..+.-|..++++++|.++.+-.. +...|.+|......+.+...++.++..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456667778888899999999887765 6678888888888888888888777777664421 111122
Q ss_pred HHHHHHhhcCChHHHHHHHHH
Q 047480 555 LLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.++....-.|+..||.-++..
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHHhccchhhhHHHHh
Confidence 344444456777777665543
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.87 E-value=2e+02 Score=24.42 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 467 EGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
.+.++|..|...|+-.. ..-|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665555444 4556666666667777777776665
No 423
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.81 E-value=7.8e+02 Score=29.41 Aligned_cols=248 Identities=14% Similarity=0.074 Sum_probs=143.9
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 355 (719)
.+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 6777788888888888777655555555555555544444444444443221122333334332 4555555666666
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhH-HH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET-SI 434 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~ 434 (719)
...+.-+ ...+.. .+. .+|..+-...+.++.+.+..+. +.....+ ++...-...+.++...+..+. +.
T Consensus 709 ~~~~~~~-~~~l~~-~L~----D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D--~~~~VR~~aa~aL~~~~~~~~~~~ 777 (897)
T PRK13800 709 RALRAGD-AALFAA-ALG----DPDHRVRIEAVRALVSVDDVES---VAGAATD--ENREVRIAVAKGLATLGAGGAPAG 777 (897)
T ss_pred HhhccCC-HHHHHH-Hhc----CCCHHHHHHHHHHHhcccCcHH---HHHHhcC--CCHHHHHHHHHHHHHhccccchhH
Confidence 5543221 112222 221 4666777777777776655432 3333444 666666677777777765443 45
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047480 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514 (719)
Q Consensus 435 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 514 (719)
..+..+.. .+|...-...+.++...|..+.+...+..+.+ .++...-...+.++++.+. +++...+..+-..|
T Consensus 778 ~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~ 850 (897)
T PRK13800 778 DAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALTDP 850 (897)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCC
Confidence 55556554 45777777788888888876555444444442 3566666667788888776 44555555554466
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+..+=...+.++...+....+...+.++++
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 776666666666665434556666666665
No 424
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=37.25 E-value=5.6e+02 Score=27.60 Aligned_cols=237 Identities=9% Similarity=0.004 Sum_probs=115.8
Q ss_pred HHHHHHhHhcCCCCChhHHHHHHHHHHccC------ChHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHH-HH
Q 047480 330 LELFGKMESLGIHPDEVTMVAVLRACVGLG------ALDFGKRLHQQYIENVVFGR-NIFLTTAVIDMYAKCGSIDT-AL 401 (719)
Q Consensus 330 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~------~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~-A~ 401 (719)
.++|++.... -|+...+...|..|...- .+.....+++......+..+ ....|..+.-++.+...-.+ |.
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 3555555432 344445555555554322 23333444443333333322 23344555555554443332 33
Q ss_pred HHHhcCCCCCCChhcHHHHHHHHHhC-CChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHH-H-HHHHHHH
Q 047480 402 SVFYKIPKNLKTVSLFNSIISGLAQH-GLGE-TSIAVFREMELMGLKPDGVTFVTVLCACSHGGL-VEEG-K-QFFESML 476 (719)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a-~-~~~~~m~ 476 (719)
.+-..... .+...|-.-+...... .+++ .-.++|......-..+-...+++.. .|+ ++.. . .++..+.
T Consensus 380 ~l~~e~f~--~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 380 KLTTELFR--DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HhhHHHhc--chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 33323333 5666666555554422 1222 1222333444322233334444433 122 2111 1 1222222
Q ss_pred HcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCch
Q 047480 477 NYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSMP-Y-DANSVIWRALLAACR--LHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 477 ~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.. ..|+. ..-+.+++.+.+.|-..+|...+.+.. . +|+...+..++.--. ..-+..-+...++.+..-.-.++.
T Consensus 453 s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 453 SV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred Hh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 32 24553 345677888899999999999998873 2 346667777665421 122366677777777654445666
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
.|......-...|+.+.+-.++-..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHH
Confidence 6666655555667666665554443
No 425
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.67 E-value=1.1e+03 Score=30.97 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
+|....+.+.++|.++.|....-...+.+ .| ..+--....+...|+...|+.++++.
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 56666666666777777766655555433 22 23333455666677777776666553
No 426
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.65 E-value=50 Score=31.15 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 494 LARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 494 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
..+.|+.+.|.+++.+. ..-| +...|-.+...-.+.|+.+.|-+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44556666666666665 2333 45566666666667777777777777777777765
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.48 E-value=60 Score=32.15 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 350 (719)
-||..|...++.|+.++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367889999999999999999999999987655555543
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.90 E-value=2.2e+02 Score=24.26 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=18.9
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHH
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 133 (719)
++.++|..|...|+-.--+.-|..-...+...|+++.|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555431112233333333444455555555443
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.63 E-value=4.3e+02 Score=25.85 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCCCChhhHHHHHHHHhccCCcH-HHHHHHHHHHH---hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCch
Q 047480 204 SCIQPDAFTFVAMFSACTELNDPR-IGKQFHAVVYK---NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKST 279 (719)
Q Consensus 204 ~g~~pd~~t~~~ll~a~~~~~~~~-~a~~i~~~~~~---~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~ 279 (719)
.++++|.....-++..+...+.-+ .-..+...+++ ..+.-..|......+...|.+.|++.+|...|-. +-.++.
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~-~~~~~~ 121 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL-GTDPSA 121 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT-S-HHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh-cCChhH
Confidence 455555555444444444332211 22333333333 2222335677888888899999999999888865 334444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc
Q 047480 280 AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL 339 (719)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (719)
..+..++......|...++--.. .-.+--|...++...|...+....+.
T Consensus 122 ~~~~~ll~~~~~~~~~~e~dlfi-----------~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 122 FAYVMLLEEWSTKGYPSEADLFI-----------ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44434555445455444432111 12233456667777777777665543
No 430
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.70 E-value=69 Score=31.67 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRAL-LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
|+..|...+.-..+.|.+.+...++.+. ...| |+..|-.- -.-+..+++++.+..++.+.+.++|++|..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4444444444444445555555555554 3334 45566442 122567889999999999999999999887653
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.43 E-value=1.5e+02 Score=20.18 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=15.1
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 432
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.32 E-value=4.8e+02 Score=25.95 Aligned_cols=38 Identities=24% Similarity=0.099 Sum_probs=17.9
Q ss_pred hHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
.+|+++|.-+..+.-+ .++-..++.++-...+...|..
T Consensus 150 ~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s 187 (361)
T COG3947 150 RKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASS 187 (361)
T ss_pred hHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHH
Confidence 5677777766654211 2333334444444444444443
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.07 E-value=4.3e+02 Score=27.67 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=39.7
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChh--HHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQME--HYGCMVDLLA--RDGRLDEAYGLIQSMP 511 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~eA~~~~~~~~ 511 (719)
...+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345789999999999999965 566554 5555656654 5678889999998863
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=3.5e+02 Score=25.98 Aligned_cols=114 Identities=12% Similarity=-0.014 Sum_probs=69.5
Q ss_pred CChHHHHHHHhcCCCCCCCh-hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKNLKTV-SLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
..++.|...|.+.....|++ .-|+.-+-.|.+..+++.+.+=-.+.++ +.||.+ ..-.+..+......+++|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 44555555555443333555 4567777788888888888777766666 578876 3334445566677788888877
Q ss_pred HHHH----HcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 473 ESML----NYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 473 ~~m~----~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
.+.. ...+.|-......|.++--..=...+..++.++.
T Consensus 102 qra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 102 QRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7763 3344455556666655544444445555555544
No 435
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.95 E-value=2.9e+02 Score=23.48 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWR-ALLAACRLHRNAKIGEIAGQK 541 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 541 (719)
..+..++..++.-.|..++|.++++..+-.+.-...| -++..|+...+-++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4556666677777777777777777765444443333 355556655555544444333
No 436
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.65 E-value=2.1e+02 Score=24.31 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 047480 194 ALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239 (719)
Q Consensus 194 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 239 (719)
..+-++....-++.|++...-..|++|.+.+|+..|..+++.+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344555566678999999999999999999999999999887654
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.46 E-value=2e+02 Score=26.25 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+..|.+.|.+++|.+++++..+ +|++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 3457777777777777777777 66554
No 438
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.31 E-value=1.3e+02 Score=29.96 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=7.4
Q ss_pred hcCChHHHHHHHhcCC
Q 047480 393 KCGSIDTALSVFYKIP 408 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~ 408 (719)
|.|++.+|.+.|+.+.
T Consensus 287 klGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLM 302 (556)
T ss_pred HhhhHHHHHHHHHHHh
Confidence 3444444444444443
No 439
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.29 E-value=6.3e+02 Score=26.75 Aligned_cols=232 Identities=9% Similarity=-0.054 Sum_probs=111.4
Q ss_pred HHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047480 79 LMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFG 158 (719)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 158 (719)
-|.++...| ..++..+....... ++...+.....++....+......+.+.+ -.++..+.......+.+.+
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d---~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA---DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC---CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCC
Confidence 377777777 56777776666543 33333444444443332222122222222 2455556777777777776
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 047480 159 YINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYK 238 (719)
Q Consensus 159 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 238 (719)
..+....+..-....+...-.+.+.++...+. .+...+....+ .+|...-...+.+++..+..+....+. .+
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~-~a-- 186 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLR-LY-- 186 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHH-HH--
Confidence 66666555555555555554444555554331 22333333332 345554555555555555443322221 11
Q ss_pred hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhhHHHHH
Q 047480 239 NLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQ-MDQRDLVSWTAMI 317 (719)
Q Consensus 239 ~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li 317 (719)
-..+|..+-..-+.+....|. +.|...... ...++....-.+.
T Consensus 187 -----------------------------------l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~ 230 (410)
T TIGR02270 187 -----------------------------------LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLL 230 (410)
T ss_pred -----------------------------------HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHH
Confidence 123444455555555555555 334433333 2333333322222
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQ 369 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 369 (719)
...... ..+++++.+....+. + .+-...+.++...|+......+..
T Consensus 231 ~~lal~-~~~~a~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 231 VLLAVA-GGPDAQAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred HHHHhC-CchhHHHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHH
Confidence 222222 233566655555543 1 245556666666676665555554
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.11 E-value=5.1e+02 Score=25.61 Aligned_cols=115 Identities=12% Similarity=-0.064 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCh
Q 047480 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG-------RLDEAYGLIQSMPYDANSVIWRALLAACR----LHRNA 532 (719)
Q Consensus 464 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~eA~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~ 532 (719)
+..+|..+|+.+.+.|..+-......+...|..-+ +...|...+.++-..-+......|...|. ...|.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 56666666666666654332222333333343321 12256666665522223332222222221 22367
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---------------ChHHHHHHHHHHHhCCC
Q 047480 533 KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY---------------RWEEARQVRKLMDDSGI 581 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 581 (719)
++|...+.++-+... ......++ .+...| +...|...+......+.
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 777777777777665 34555555 444444 55666666666655543
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.11 E-value=2.1e+02 Score=22.55 Aligned_cols=37 Identities=5% Similarity=0.093 Sum_probs=24.0
Q ss_pred hcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcch
Q 047480 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCP 193 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (719)
..|+.+.|+++++.++ +....|..+++++-..|+-.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3466677777777776 666667777777666665433
No 442
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.02 E-value=64 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=22.7
Q ss_pred cCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHH
Q 047480 85 RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~ 119 (719)
..|.-.+|..+|++|+.+|-. ||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~p-Pdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNP-PDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCC-Ccc--HHHHHHHh
Confidence 345666788888888888875 664 66666654
No 443
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.54 E-value=2.6e+02 Score=23.77 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHH-HHHHHHHhcCCHHHHHHHH
Q 047480 242 CVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWS-SMISGYTREGKIERARQLF 302 (719)
Q Consensus 242 ~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~-~li~~y~~~g~~~~A~~~f 302 (719)
|-|--..+.-++..++.-+|..++|.+++...+..++-...| .+++.|.++.+-++..++-
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344445556667777777777788887777765555544443 4777777777666655543
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.12 E-value=87 Score=31.03 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
-||..|..-.+.|+.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888888888888888888888888765555665444
No 445
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=30.96 E-value=5.4e+02 Score=25.55 Aligned_cols=158 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCC
Q 047480 196 WLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGM 275 (719)
Q Consensus 196 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~ 275 (719)
+.|.-=+..|.+++..-+..+++.+...-.......+.+.+...
T Consensus 98 DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N------------------------------------ 141 (292)
T PF13929_consen 98 DYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRN------------------------------------ 141 (292)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhh------------------------------------
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHh-----hcCCCChhhHHHHHHHHHh-cCChhHHHHHHHHhHhcC--CCCChhH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFD-----QMDQRDLVSWTAMISGYSQ-VGGFSQALELFGKMESLG--IHPDEVT 347 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~-----~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g--~~p~~~t 347 (719)
..+.+|.++|+ +-.-.|...-..++..... .+..-.|+--+-...... -.++..+
T Consensus 142 -----------------~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~v 204 (292)
T PF13929_consen 142 -----------------KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNV 204 (292)
T ss_pred -----------------HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhH
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 047480 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYK 406 (719)
Q Consensus 348 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 406 (719)
...++..++..+++..-.+++.......+...|...|..+|+...+.|+..-..++.++
T Consensus 205 i~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 205 IISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 446
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=30.55 E-value=3.4e+02 Score=23.37 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcc
Q 047480 78 TLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF 110 (719)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 110 (719)
.++--+...|+++.|+++.+-+.+.|...|+.+
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f 85 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRF 85 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCCCccccc
Confidence 445566788889999999888888887656654
No 447
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.49 E-value=2.1e+02 Score=31.17 Aligned_cols=135 Identities=13% Similarity=-0.026 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 047480 445 LKPDGVTFVTVLCACSHGG--LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR-DGRLDEAYGLIQSM-PYDA--NSVI 518 (719)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~-~~~p--~~~~ 518 (719)
--|+..|...++.-...-- .-+-|-.++..|. +-+.|--...| +..+|.| .|+...|.+.+... ..+| ..+.
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3567777666665444322 2233444444443 33344433333 2344544 68888888887765 2333 2233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
.-.|.....+.|-.-.|-..+.+.+.+....|-++..++++|....+.+.|.+.++...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 444555556667777888888888888887888999999999999999999999998876543
No 448
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.42 E-value=9.6e+02 Score=28.25 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMES 338 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (719)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888888765
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.11 E-value=75 Score=23.02 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
---.+|.+|.+.|++++|.++.+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567888888888888888877764
No 450
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.48 E-value=8.6e+02 Score=27.39 Aligned_cols=240 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCCChHHHHHHhccCCCC--CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHH
Q 047480 42 SSQLISFFALSGCKNGLFRSRILFSQIDNP--NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSC 119 (719)
Q Consensus 42 ~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~ 119 (719)
.+.|+.+... + +.++-..+++++... ....|+.+++++...|-.....-+.+.+....+.......+...+...
T Consensus 349 f~~Lv~~lr~--l--~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~ 424 (618)
T PF01347_consen 349 FSRLVRLLRT--L--SYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFH 424 (618)
T ss_dssp HHHHHHHHTT--S---HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--C--CHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhh
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChh-------HHHHHHHHHHhc------------CChhHHHHHHccCCC-----CCh
Q 047480 120 ARLSSFKSGCQIHCHIIKFGLEFDLF-------IRNALIHFYSIF------------GYINNAHKVFEGSLA-----RDL 175 (719)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~Li~~y~~~------------g~~~~A~~~f~~~~~-----~~~ 175 (719)
.+.-..+....+++.+.......+.. .+.+|+.-++.. --.++..+.+..... .|.
T Consensus 425 ~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 504 (618)
T PF01347_consen 425 VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE 504 (618)
T ss_dssp -----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H
T ss_pred cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH
Q ss_pred hhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHh--ccCCcHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 047480 176 VSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACT--ELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253 (719)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~l 253 (719)
..--..|.++...|.. .++..+..........+...=...+.++. .....+.+..++-.+... ...+..+..+-
T Consensus 505 ~~~~~~LkaLgN~g~~-~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n---~~e~~EvRiaA 580 (618)
T PF01347_consen 505 EEKIVYLKALGNLGHP-ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN---TTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHHHHHHHHT-G-GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH----TTS-HHHHHHH
T ss_pred HHHHHHHHHhhccCCc-hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC---CCCChhHHHHH
Q ss_pred HHHHHhc-CChHHHHHHHHHcCCCCchHHHHHHHHHH
Q 047480 254 INMYAKC-GLMNMAERVFSTMGMSKSTAAWSSMISGY 289 (719)
Q Consensus 254 i~~y~~~-g~~~~a~~~~~~~~~~~~~~~~~~li~~y 289 (719)
..+..++ -.......+...+..+|+..+.+......
T Consensus 581 ~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 581 YLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
No 451
>PRK11619 lytic murein transglycosylase; Provisional
Probab=29.40 E-value=8.9e+02 Score=27.54 Aligned_cols=397 Identities=8% Similarity=-0.068 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELND 225 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 225 (719)
.-..-+..+.+.+++..... |..-+..+...-.....+....|+.++|....+.+-..|- ........++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 33444555567788888777 4332334666666677788888888888877777765552 334556666666665554
Q ss_pred cHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 047480 226 PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKS-TAAWSSMISGYTREGKIERARQLFDQ 304 (719)
Q Consensus 226 ~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (719)
+.... ++.. +......|+...|..+...+ .++ ......++..+.+ ...+..++..
T Consensus 179 lt~~d------------------~w~R-~~~al~~~~~~lA~~l~~~l--~~~~~~~a~a~~al~~~---p~~~~~~~~~ 234 (644)
T PRK11619 179 QDPLA------------------YLER-IRLAMKAGNTGLVTYLAKQL--PADYQTIASALIKLQND---PNTVETFART 234 (644)
T ss_pred CCHHH------------------HHHH-HHHHHHCCCHHHHHHHHHhc--ChhHHHHHHHHHHHHHC---HHHHHHHhhc
Confidence 33222 1111 23334556666666666544 222 2234444444433 3334444433
Q ss_pred cCCCChhhHHHHHHHH--HhcCChhHHHHHHHHhHhc-CCCCChh--HHHHHHHHHHccCChHHHHHHHHHHHHHcCCCC
Q 047480 305 MDQRDLVSWTAMISGY--SQVGGFSQALELFGKMESL-GIHPDEV--TMVAVLRACVGLGALDFGKRLHQQYIENVVFGR 379 (719)
Q Consensus 305 m~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (719)
.. ++...-...+.++ ....+.+.|..++...... +..+... ....+.......+...++...+. ...... .
T Consensus 235 ~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~-~~~~~~--~ 310 (644)
T PRK11619 235 TG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRD-DVIMRS--Q 310 (644)
T ss_pred cC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHH-hccccc--C
Confidence 32 1211111111122 2345668899999887543 3333322 22233222233222455555555 222221 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChh-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVS-LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
+..+...-+....+.++++.+...|..|+....+.. -.-=+..++...|+.++|...|++... . .+|-.++.+
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa 384 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA 384 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH
Confidence 444555566666789999999999999876522222 223355666778999999999999743 1 245444422
Q ss_pred HhccCcHHHH-HHHHH-HHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047480 459 CSHGGLVEEG-KQFFE-SMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 459 ~~~~g~~~~a-~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
.+.|..-.- ..... .... +. ... --.-+..+...|...+|...+..+....+......+.......|..+.+.
T Consensus 385 -~~Lg~~~~~~~~~~~~~~~~--~~-~~~-~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 385 -QRLGEEYPLKIDKAPKPDSA--LT-QGP-EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred -HHcCCCCCCCCCCCCchhhh--hc-cCh-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 222321000 00000 0000 00 001 11234566778999999888877643345555555555567788888888
Q ss_pred HHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 047480 537 IAGQKLLDLE---PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQK 583 (719)
Q Consensus 537 ~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 583 (719)
....+....+ -.-|..|......+++.-..+.+.-.--...|.++.+
T Consensus 460 ~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 460 QATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 7765543211 0112346666666666556666554333333555543
No 452
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.04 E-value=3.8e+02 Score=25.46 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKP-----DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMV 491 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 491 (719)
.|.|+--|.-+..+.+|-+.|.. +.|+.| +...=..-+......|++++|.+....+--.-+..|...+-.|.
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq 106 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQ 106 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHH
Q ss_pred HH----HHhcCCHHHHHHHHHh
Q 047480 492 DL----LARDGRLDEAYGLIQS 509 (719)
Q Consensus 492 ~~----~~~~g~~~eA~~~~~~ 509 (719)
.. +.|.|..++|+++.+.
T Consensus 107 ~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 107 QLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
No 453
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=28.88 E-value=20 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=17.1
Q ss_pred ceEEEecCCcccccCCCccCCC
Q 047480 695 REIMVRDAIRFHLFKKGNCSCM 716 (719)
Q Consensus 695 ~~~~~~d~~~~h~~~~g~csc~ 716 (719)
..|=+.|.+..|+|+||+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4577899999999999986543
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.85 E-value=1.6e+02 Score=23.41 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=14.5
Q ss_pred HHHHhcCChhHHHHHHHHHhcc
Q 047480 524 AACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
......|+.++|...+++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3356667777777777777654
No 455
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.98 E-value=1.1e+02 Score=28.94 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=49.7
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
...++.+.+.+++.+++++-|+....|..++..-.+.|+++.|.+-+++..+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4568889999999999999999999999999999999999999999999887544
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.85 E-value=1.3e+02 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 448 DGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
|-.--..++.++...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455666666777777766666655
No 457
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.57 E-value=7.2e+02 Score=25.92 Aligned_cols=24 Identities=8% Similarity=-0.310 Sum_probs=12.8
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCC
Q 047480 424 LAQHGLGETSIAVFREMELMGLKP 447 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p 447 (719)
+...+++..|.++|+++.+....|
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~ 163 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSA 163 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccCh
Confidence 344555666666666655543333
No 458
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.18 E-value=8.1e+02 Score=26.37 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=70.7
Q ss_pred HHHHhcCChHHHHHHHhcCCCC--CC--------ChhcHHHHHHHHHhCCChhHHHHHHHHHHH-------cCCCCCH--
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN--LK--------TVSLFNSIISGLAQHGLGETSIAVFREMEL-------MGLKPDG-- 449 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~--~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~-- 449 (719)
+.+.-.|+..+|.+++....-. +- .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4455679999999988764322 11 233578888888888888877777777664 4655532
Q ss_pred ---------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 450 ---------VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 450 ---------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
++|+.-+ .+.+.|++-.|.+.|.+.... +..++..|-.|..++.
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 3455444 577889999999999888731 3455667777766654
No 459
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.26 E-value=1.1e+02 Score=30.34 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.9
Q ss_pred cCChhHHHHHHHHHhccCCCCchh
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
++++-+|-+.+-+++...|.+..+
T Consensus 163 ~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 163 HNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hhhhHhhhhhhheeeeeCCCchHH
Confidence 344555555555555555555443
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.18 E-value=2.8e+02 Score=30.79 Aligned_cols=48 Identities=6% Similarity=-0.099 Sum_probs=31.4
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCCcH
Q 047480 180 TLINGYAQVKEPCPALWLFRKMQDS--CIQPDAFTFVAMFSACTELNDPR 227 (719)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~ 227 (719)
+|..+|..+|++..+.++++..... |-+.=...||.-|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 6777888888888888877777543 22223335666677777777654
No 461
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=25.78 E-value=80 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCc
Q 047480 610 KEIELMLKDMTMKLKSAGYVPNTVQ 634 (719)
Q Consensus 610 ~~~~~~l~~l~~~m~~~g~~p~~~~ 634 (719)
.++...+++...+++..|+.||...
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4566777888888999999999764
No 462
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=1.4e+02 Score=29.22 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=46.5
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 524 AACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+++.+.++++.|....++.+.++|+++.-..--+-+|.+.|...-|.+-+....+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 44777888999999999999999998888888888999999988888877775543
No 463
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.45 E-value=3.6e+02 Score=26.62 Aligned_cols=27 Identities=4% Similarity=0.136 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
.+.+..+.+-|++.++.+.+.+...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 566777888889888888888877653
No 464
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.17 E-value=2.1e+02 Score=22.31 Aligned_cols=62 Identities=8% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHH
Q 047480 25 LQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEA 92 (719)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 92 (719)
..+.+.+++.|+-. ..-.-..-+. . .+.+.|+++.+.+|.+...+|..+..++...|...-|
T Consensus 19 ~~v~~~L~~~~Vlt---~~~~e~I~~~--~-tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFT---PDMIEEIQAA--G-SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCC---HHHHHHHHcC--C-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34666666666432 1111122233 3 5678888888888888888888888888877755443
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.96 E-value=3.5e+02 Score=23.71 Aligned_cols=48 Identities=8% Similarity=-0.000 Sum_probs=27.3
Q ss_pred hHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 047480 177 SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224 (719)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 224 (719)
.-..++..+.+.++.-.|.++++++.+.+...+..|.-..|+.+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555556555666666666666655555555555555554444
No 466
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.90 E-value=7.3e+02 Score=25.05 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=25.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHH
Q 047480 423 GLAQHGLGETSIAVFREMELMGLKPDGV---TFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
+-.+.|+..+|.+.|+.+.+. .|-.. .-..|+.+|....-+.....++.
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777776653 23111 22345555555544444444443
No 467
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.49 E-value=3.1e+02 Score=30.96 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=34.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV----------TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
+...++-.|....+++..+++.+.+.. -||.. .|.-.++-=-+-|+-++|+...-.++
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lv 270 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLV 270 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHH
Confidence 345566667777777777777777765 34322 12223333334567777777766666
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.99 E-value=3.2e+02 Score=24.68 Aligned_cols=52 Identities=10% Similarity=-0.089 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc
Q 047480 175 LVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDP 226 (719)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 226 (719)
+..-.+++..+...+..-.|.++++.+.+.+..++..|.--.|..+...|-+
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3333444555555555666777777777666666666655555555555533
No 469
>PF15161 Neuropep_like: Neuropeptide-like
Probab=23.49 E-value=46 Score=23.06 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.7
Q ss_pred cccccCchhHHHHHHhh
Q 047480 675 NLRICGDCHLAFKLLSE 691 (719)
Q Consensus 675 ~~~~~~~~~~~~~~~s~ 691 (719)
.-|-|.|||.+- |+.+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 457899999765 6654
No 470
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=23.43 E-value=30 Score=33.93 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=51.6
Q ss_pred HHHHHHHHcCcccCCCccccccChhhhhHhhhhhhHHHHHHHHhhcCCCCCcEEEeccccccCchhHHHHHHhhhcCceE
Q 047480 618 DMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFGLINSRSKETIRITKNLRICGDCHLAFKLLSEIYRREI 697 (719)
Q Consensus 618 ~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 697 (719)
+|+.+|++.|..-- ...+.|.|+.||-++.|||...| +|-.--+..+|.....+..+
T Consensus 237 DLY~EM~E~gVI~l-----------------~~~~SKvaLV~GQMNePPGARaR------V~LTgLTvAEYFRD~egQDV 293 (521)
T KOG1350|consen 237 DLYHEMIESGVINL-----------------EGETSKVALVYGQMNEPPGARAR------VALTGLTVAEYFRDQEGQDV 293 (521)
T ss_pred HHHHHHHhcCeeec-----------------cCCcceEEEEeeccCCCCCceee------eeeecccHHHHhhccccceE
Confidence 56777888775311 12245678899999999998764 55556678899999999988
Q ss_pred EEecCCcccccCCC
Q 047480 698 MVRDAIRFHLFKKG 711 (719)
Q Consensus 698 ~~~d~~~~h~~~~g 711 (719)
++==.|.|..-..|
T Consensus 294 LLFIDNIFRFtQAG 307 (521)
T KOG1350|consen 294 LLFIDNIFRFTQAG 307 (521)
T ss_pred EEeehhhhhhhccc
Confidence 88777877655544
No 471
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=23.34 E-value=1e+03 Score=26.22 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-chhHHHHHHHHhhc
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-GAHYVLLSNMLAET 563 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~ 563 (719)
..-.+|-+-+....++.-|.++-++.++. ....|.+..-+|.+.+++..|..-|.+.+++.-.+ |....-+++.- .-
T Consensus 557 ~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~i-eG 634 (1141)
T KOG1811|consen 557 AASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLI-EG 634 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhh-cC
Confidence 34556666777777778888887777654 44589998899999999999999999999976433 33444444443 33
Q ss_pred CChHHHHHHHHHHHhCCCCCCC
Q 047480 564 YRWEEARQVRKLMDDSGIQKPP 585 (719)
Q Consensus 564 g~~~~A~~~~~~m~~~~~~~~~ 585 (719)
| ...-.....+|.+.-.++.|
T Consensus 635 g-pp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 635 G-PPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred C-CcchHHHHHHHHHHhccCCc
Confidence 3 22223333444444444444
No 472
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.04 E-value=1.6e+02 Score=22.09 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=37.7
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFES 474 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (719)
+.+.|..++..+... .+++..||++...+.+++- .-..+.||..+.. .+..|.+-|.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG----------~L~~aL~ey~~ 70 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILG----------ELAAALEEYKK 70 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHH----------HHHHHHHHHHH
Confidence 456677777777654 5777788888887777642 2233677776654 34445555666
Q ss_pred HH
Q 047480 475 ML 476 (719)
Q Consensus 475 m~ 476 (719)
+.
T Consensus 71 ~~ 72 (82)
T PF11123_consen 71 MV 72 (82)
T ss_pred Hc
Confidence 55
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.00 E-value=5.8e+02 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.-|.-|.+.|+++.+...|..+.
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 34445556666666666665554
No 474
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.87 E-value=1.9e+02 Score=30.57 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 506 LIQSMPYDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 506 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
+|....++|. ..++.+-++.+.+++|+..|-.++++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444455553 2356666777889999999999999999999864
No 475
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.82 E-value=1.1e+03 Score=26.31 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=35.5
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCC-ccHHHHHHHHHHcCCCchHHHHHHHHhHh
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPN-IFIWNTLMRGYSRSDSPQEALVLYTSMLS 101 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 101 (719)
....+.|+.+... + +.++-..++.++.. . ...|..+++++...|......-+.+.+..
T Consensus 310 ~~~f~~lv~~lR~--~--~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 310 AAKFLRLVRLLRT--L--SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHh--C--CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 4556667777665 3 55566666665544 3 56778888888888766544444444443
No 476
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.54 E-value=1e+03 Score=26.12 Aligned_cols=55 Identities=11% Similarity=-0.042 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCC--Ch---hhHHHHHHHHHcCCCcchHHHHHHHHH
Q 047480 148 NALIHFYSIFGYINNAHKVFEGSLAR--DL---VSYNTLINGYAQVKEPCPALWLFRKMQ 202 (719)
Q Consensus 148 ~~Li~~y~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (719)
..|+.-|.+++++++|..++..|.=. .. .+.+.+.+.+.+..--.+....++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46778899999999999999887621 11 233344444445443444444444444
No 477
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.13 E-value=3.9e+02 Score=28.08 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---------CChhcHHHHHHHHHhCCChhHHHHHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKNL---------KTVSLFNSIISGLAQHGLGETSIAVFREME 441 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 441 (719)
.-.|++.++-.|++..|.++++.+.-.. -.+.++--+.-+|...+++.+|+++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888887764331 123345566677788888888888887654
No 478
>PHA00425 DNA packaging protein, small subunit
Probab=22.08 E-value=3e+02 Score=20.99 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=34.7
Q ss_pred ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
+.+.|...+..+... .+++..||++-..+.+++ ..-..++||..+...+..
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHk-----------F~isKl~pD~~iLg~la~ 65 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHK-----------FQISKLQPDENILGGLAA 65 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhc-----------ccccccCCcHHHHHHHHH
Confidence 456777777777665 577888998887777664 223347888877655443
No 479
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.03 E-value=76 Score=23.17 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHhHhCCCCCCCcc
Q 047480 87 DSPQEALVLYTSMLSKGIVSPNNF 110 (719)
Q Consensus 87 g~~~~A~~~~~~m~~~g~~~p~~~ 110 (719)
=+++.|+..|.++...|-.||+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 368899999999988776545543
No 480
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.91 E-value=9.7e+02 Score=25.40 Aligned_cols=215 Identities=9% Similarity=0.052 Sum_probs=117.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 355 (719)
.++..++.....++....+......+.+.+..++.......+.++...+... +...+..+.+. ++...-..++.++
T Consensus 66 d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~-a~~~L~~~L~~---~~p~vR~aal~al 141 (410)
T TIGR02270 66 ADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ-AEPWLEPLLAA---SEPPGRAIGLAAL 141 (410)
T ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH-HHHHHHHHhcC---CChHHHHHHHHHH
Confidence 3444444443334433333333556666666666666777777777666544 33444444432 2444444555666
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
...+. +-...+.. .+. .++..+-..-+..+++.+..+..-.+-.-... .|...-..-+.+....|. .+|..
T Consensus 142 ~~r~~-~~~~~L~~-~L~----d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d--~~~~VR~aA~~al~~lG~-~~A~~ 212 (410)
T TIGR02270 142 GAHRH-DPGPALEA-ALT----HEDALVRAAALRALGELPRRLSESTLRLYLRD--SDPEVRFAALEAGLLAGS-RLAWG 212 (410)
T ss_pred Hhhcc-ChHHHHHH-Hhc----CCCHHHHHHHHHHHHhhccccchHHHHHHHcC--CCHHHHHHHHHHHHHcCC-HhHHH
Confidence 55432 22222222 222 46666777777777777765444433333334 677776777777788887 67777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 047480 436 VFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPY 512 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 512 (719)
.+..... .|+......+.......|. +++.+.+..+.+. +. +-...+.++++.|+..-+.-+++.|..
T Consensus 213 ~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 213 VCRRFQV---LEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHHHHh---ccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 6666443 3333333333333333333 3666666665532 22 555677888888888877777777753
No 481
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.91 E-value=1.1e+02 Score=28.63 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=42.8
Q ss_pred hHHHHHHhcc------------ChHHHHHHHHHHHHhCCCh--hchHHHHHHHhhccCCCCChHHHHHHhccC
Q 047480 10 SLLALLESCK------------SLKQALQIHGQIVHSGLNH--HISSSQLISFFALSGCKNGLFRSRILFSQI 68 (719)
Q Consensus 10 ~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~ 68 (719)
-|..+-++|. +++-..++..-.++.|+.. +.+|+++|+-=.- . -++++.+++|..+
T Consensus 165 E~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG--~-TrpedV~~l~~~~ 234 (236)
T TIGR03581 165 EYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETG--N-TRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccC--C-CCHHHHHHHHHHh
Confidence 4667777775 6777888888888899876 8899999876554 5 6788888887654
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.46 E-value=4.6e+02 Score=22.94 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
.++..+.+.++.-.|.++++++.+.+...+..|....|..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555555555666666666666655555555555555555444
No 483
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.34 E-value=7.2e+02 Score=23.70 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHH
Q 047480 252 AVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRD-LVSWTAMISGYS 321 (719)
Q Consensus 252 ~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~ 321 (719)
-++..+...|+.+.|..+++..+.+.+..--..+......++.+.+|...-+...++. ...|..++..+.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 3555555566666666666666544443322222222355666777766665554422 234444444444
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.27 E-value=6.8e+02 Score=23.36 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH-HHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCE
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL-SNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~ 595 (719)
...++++..|...||++.|.++|--++...+=|......+ +.++.+.+.-....+.++.|...=...............
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 3456677778888888888888877777655444433333 335555555444446666664321111000111111223
Q ss_pred EEEEecCCCCCCC
Q 047480 596 LHRFLASKKSHPQ 608 (719)
Q Consensus 596 ~~~f~~~~~~~~~ 608 (719)
.+.|..|...|-.
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 4677888877744
No 485
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.68 E-value=3.7e+02 Score=26.01 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=27.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHhccCcHHHHHHHH
Q 047480 420 IISGLAQHGLGETSIAVFREMEL----MGL-KPDGVTFVTVLCACSHGGLVEEGKQFF 472 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (719)
|..-|...|++++|+++|+.+.. .|. .+...+...++.+..+.|+.+....+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44556667777777777766632 221 122234444445555556555554443
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.22 E-value=2.2e+02 Score=20.94 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh
Q 047480 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 496 (719)
|..+.++.++..++.-.-+++++.++.++.+.|. .+...|---+..++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444444555555554455555555555554442 334444444444443
No 487
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.20 E-value=5.4e+02 Score=23.65 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=19.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 047480 491 VDLLARDGRLDEAYGLIQSMPYDANSVIWRALL 523 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll 523 (719)
+-.|.+.|.+++|.+++++.-..|+.......+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 445667777777777777764355544444333
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.01 E-value=4.4e+02 Score=23.80 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=23.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
++..+...++.-.|.++++++.+.+..++..|....|..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333444445556666666666555555555555555554444
Done!