Query 047480
Match_columns 719
No_of_seqs 782 out of 4678
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-42 4.6E-47 389.6 37.3 484 47-579 61-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-39 3.8E-44 365.9 35.9 463 83-580 63-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-25 1.8E-29 232.3 40.8 372 183-565 7-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 4.4E-27 1.5E-31 252.9 21.5 200 297-497 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.7E-24 9.3E-29 226.8 39.8 352 218-579 7-368 (388)
6 4g26_A Pentatricopeptide repea 99.9 9E-27 3.1E-31 250.4 18.3 212 91-358 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.8E-22 9.7E-27 219.7 32.4 449 74-556 7-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4E-26 214.8 35.3 426 146-580 8-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.6E-26 209.8 33.7 325 243-575 22-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.5E-21 8.6E-26 213.5 32.1 432 73-579 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 5.8E-20 2E-24 197.6 33.4 366 174-568 25-443 (450)
12 3fp2_A TPR repeat-containing p 99.8 4.7E-19 1.6E-23 195.3 27.3 438 40-554 26-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.1E-22 173.2 32.5 305 246-579 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.8E-17 1.3E-21 169.4 33.2 323 209-563 2-353 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6E-22 169.7 24.1 287 54-407 16-308 (449)
16 3hym_B Cell division cycle pro 99.8 4.6E-17 1.6E-21 166.8 27.4 289 274-566 17-321 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 1.9E-14 6.7E-19 163.4 50.5 483 20-571 854-1376(1630)
18 2ooe_A Cleavage stimulation fa 99.8 9.6E-16 3.3E-20 168.3 37.0 211 363-579 256-492 (530)
19 3hym_B Cell division cycle pro 99.8 2.7E-16 9.1E-21 161.1 28.6 267 308-579 20-299 (330)
20 1b89_A Protein (clathrin heavy 99.8 6.2E-17 2.1E-21 165.6 23.2 346 156-575 15-368 (449)
21 1fch_A Peroxisomal targeting s 99.7 1.5E-16 5.1E-21 165.9 24.5 280 290-575 36-355 (368)
22 2ooe_A Cleavage stimulation fa 99.7 2E-14 7E-19 157.7 40.8 409 132-549 2-496 (530)
23 2xm6_A Protein corresponding t 99.7 1.9E-14 6.6E-19 156.2 39.5 366 143-562 38-452 (490)
24 1xi4_A Clathrin heavy chain; a 99.7 7E-13 2.4E-17 150.9 52.7 411 43-510 989-1442(1630)
25 4g1t_A Interferon-induced prot 99.7 3.7E-15 1.3E-19 161.1 29.9 376 174-590 50-470 (472)
26 4eqf_A PEX5-related protein; a 99.7 6.4E-16 2.2E-20 161.0 21.8 262 310-575 65-352 (365)
27 1fch_A Peroxisomal targeting s 99.7 9.5E-16 3.2E-20 159.8 22.1 241 278-543 97-357 (368)
28 2xm6_A Protein corresponding t 99.7 1.1E-13 3.7E-18 150.3 38.9 338 223-581 56-434 (490)
29 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.9E-20 156.1 21.8 260 313-577 24-313 (327)
30 3mkr_A Coatomer subunit epsilo 99.7 2E-14 6.8E-19 144.0 29.4 266 291-572 11-287 (291)
31 4eqf_A PEX5-related protein; a 99.7 3.7E-15 1.3E-19 155.2 21.6 260 252-541 70-352 (365)
32 3spa_A Mtrpol, DNA-directed RN 99.7 6.5E-17 2.2E-21 178.0 7.5 133 378-510 124-262 (1134)
33 3mkr_A Coatomer subunit epsilo 99.7 5.6E-15 1.9E-19 148.0 20.8 249 317-580 6-265 (291)
34 4g1t_A Interferon-induced prot 99.7 1.1E-14 3.7E-19 157.5 24.3 268 260-557 188-471 (472)
35 3cv0_A Peroxisome targeting si 99.6 4.2E-14 1.4E-18 144.4 22.1 266 253-545 27-315 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.6 1.1E-15 3.6E-20 168.5 9.5 153 275-428 123-286 (1134)
37 2pl2_A Hypothetical conserved 99.6 4.9E-14 1.7E-18 134.7 19.0 195 378-576 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 2.5E-13 8.4E-18 133.3 20.7 228 311-579 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.5 5.5E-13 1.9E-17 130.9 20.1 235 278-558 4-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.7E-13 2E-17 132.2 19.5 243 322-573 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 6E-13 2E-17 132.0 19.0 245 281-564 5-269 (272)
42 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.5E-17 127.3 21.3 199 381-580 37-239 (252)
43 2vq2_A PILW, putative fimbrial 99.5 2.7E-12 9.2E-17 122.9 20.4 199 380-579 7-211 (225)
44 2h6f_A Protein farnesyltransfe 99.5 3.3E-12 1.1E-16 132.3 21.9 245 311-562 98-365 (382)
45 3e4b_A ALGK; tetratricopeptide 99.5 5.3E-12 1.8E-16 134.9 23.6 371 115-577 9-419 (452)
46 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.2E-17 127.1 17.1 199 380-580 22-223 (243)
47 2ho1_A Type 4 fimbrial biogene 99.4 1.2E-11 4E-16 121.1 22.4 207 310-554 37-247 (252)
48 1ouv_A Conserved hypothetical 99.4 2.8E-11 9.6E-16 120.0 25.3 224 309-580 5-252 (273)
49 3e4b_A ALGK; tetratricopeptide 99.4 4.3E-12 1.5E-16 135.6 20.2 345 216-581 9-389 (452)
50 2pl2_A Hypothetical conserved 99.4 5.5E-12 1.9E-16 120.4 18.8 194 277-510 3-211 (217)
51 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-12 7.7E-17 125.3 16.4 215 310-563 23-240 (243)
52 1ouv_A Conserved hypothetical 99.4 3.8E-11 1.3E-15 119.0 25.5 227 277-549 4-255 (273)
53 2vq2_A PILW, putative fimbrial 99.4 1.3E-11 4.5E-16 118.0 21.0 209 310-556 8-222 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.3E-12 2.1E-16 124.7 17.8 152 85-239 17-173 (275)
55 3u4t_A TPR repeat-containing p 99.4 3.3E-11 1.1E-15 119.3 22.6 227 247-477 3-249 (272)
56 2h6f_A Protein farnesyltransfe 99.4 8.9E-12 3E-16 129.1 18.6 228 346-579 98-348 (382)
57 3vtx_A MAMA; tetratricopeptide 99.4 2E-11 6.9E-16 113.0 18.9 166 412-580 3-171 (184)
58 4e6h_A MRNA 3'-END-processing 99.4 1.8E-09 6E-14 119.4 37.4 436 86-550 45-575 (679)
59 4abn_A Tetratricopeptide repea 99.4 3.3E-12 1.1E-16 137.4 14.7 195 379-576 100-318 (474)
60 3sf4_A G-protein-signaling mod 99.4 5.2E-12 1.8E-16 133.1 14.6 154 414-567 187-364 (406)
61 4a1s_A PINS, partner of inscut 99.3 5.1E-12 1.7E-16 133.6 14.1 267 281-579 50-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.3 2.4E-09 8.3E-14 118.3 35.6 145 25-172 52-222 (679)
63 3sf4_A G-protein-signaling mod 99.3 4.4E-11 1.5E-15 125.9 20.8 196 383-578 89-335 (406)
64 3ro2_A PINS homolog, G-protein 99.3 2E-11 6.7E-16 124.6 17.5 198 382-579 84-332 (338)
65 2ond_A Cleavage stimulation fa 99.3 4.7E-10 1.6E-14 113.3 25.2 220 327-550 33-275 (308)
66 4gyw_A UDP-N-acetylglucosamine 99.3 2.1E-11 7E-16 136.5 16.4 163 412-578 7-173 (723)
67 3vtx_A MAMA; tetratricopeptide 99.3 5.8E-11 2E-15 109.8 16.0 170 379-550 3-175 (184)
68 3ulq_A Response regulator aspa 99.3 1.1E-10 3.8E-15 122.1 19.5 233 316-578 109-367 (383)
69 3ulq_A Response regulator aspa 99.3 2.8E-10 9.6E-15 119.0 22.5 227 285-547 109-370 (383)
70 3nf1_A KLC 1, kinesin light ch 99.3 2.5E-11 8.7E-16 122.5 13.2 239 311-578 28-306 (311)
71 3ro2_A PINS homolog, G-protein 99.3 1E-10 3.4E-15 119.3 17.2 135 414-548 183-335 (338)
72 4a1s_A PINS, partner of inscut 99.2 3.8E-11 1.3E-15 126.9 14.0 275 245-548 46-375 (411)
73 2ond_A Cleavage stimulation fa 99.2 4.4E-10 1.5E-14 113.6 21.0 215 362-581 33-272 (308)
74 3q15_A PSP28, response regulat 99.2 1.1E-09 3.7E-14 114.3 22.0 233 316-578 107-364 (378)
75 3as5_A MAMA; tetratricopeptide 99.2 4.2E-10 1.4E-14 103.7 16.7 161 383-579 10-173 (186)
76 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.8E-14 100.7 18.7 161 345-509 8-169 (186)
77 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.7E-14 105.2 18.7 165 413-579 6-209 (228)
78 1hz4_A MALT regulatory protein 99.2 1.5E-08 5E-13 105.4 28.2 195 384-578 96-321 (373)
79 4i17_A Hypothetical protein; T 99.2 1.3E-09 4.3E-14 104.7 18.4 206 343-560 5-224 (228)
80 4abn_A Tetratricopeptide repea 99.1 3.7E-10 1.3E-14 121.4 15.8 180 397-580 84-288 (474)
81 3nf1_A KLC 1, kinesin light ch 99.1 2.1E-10 7.2E-15 115.7 12.6 242 278-548 26-310 (311)
82 3q15_A PSP28, response regulat 99.1 2.1E-08 7E-13 104.5 24.2 233 284-545 106-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.0 6.3E-10 2.2E-14 124.5 12.3 165 379-547 7-176 (723)
84 3edt_B KLC 2, kinesin light ch 99.0 2.8E-09 9.7E-14 105.5 13.4 196 383-578 45-280 (283)
85 1qqe_A Vesicular transport pro 99.0 2E-08 6.8E-13 100.4 17.8 220 294-553 32-277 (292)
86 1hz4_A MALT regulatory protein 98.9 1.1E-06 3.8E-11 91.0 31.5 194 283-476 97-320 (373)
87 3qky_A Outer membrane assembly 98.9 4.8E-08 1.6E-12 95.8 19.5 206 380-625 14-247 (261)
88 3edt_B KLC 2, kinesin light ch 98.9 2E-08 6.7E-13 99.4 16.6 165 382-546 86-282 (283)
89 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.7E-12 92.6 21.9 177 400-580 85-283 (310)
90 1qqe_A Vesicular transport pro 98.9 1.2E-08 4.1E-13 102.0 14.8 228 328-577 3-267 (292)
91 4ga2_A E3 SUMO-protein ligase 98.9 2.5E-09 8.4E-14 95.0 7.8 140 423-565 6-149 (150)
92 2fo7_A Synthetic consensus TPR 98.9 3.2E-08 1.1E-12 85.2 14.5 123 456-579 8-132 (136)
93 2fo7_A Synthetic consensus TPR 98.8 6.9E-08 2.3E-12 83.1 15.0 131 416-548 3-135 (136)
94 2pzi_A Probable serine/threoni 98.8 1.6E-08 5.4E-13 113.8 13.3 169 392-565 402-583 (681)
95 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.2E-07 4.2E-12 90.5 17.4 181 382-581 5-215 (225)
96 3rjv_A Putative SEL1 repeat pr 98.8 2.2E-07 7.4E-12 87.8 18.0 173 400-581 5-199 (212)
97 3qou_A Protein YBBN; thioredox 98.7 1.4E-07 4.6E-12 94.0 15.6 162 412-577 115-282 (287)
98 3mv2_B Coatomer subunit epsilo 98.7 1.1E-06 3.9E-11 86.1 21.6 168 379-552 98-289 (310)
99 3gyz_A Chaperone protein IPGC; 98.7 4.3E-08 1.5E-12 86.6 10.2 101 480-580 31-134 (151)
100 4ga2_A E3 SUMO-protein ligase 98.7 1.9E-08 6.4E-13 89.3 7.6 123 455-579 3-129 (150)
101 2r5s_A Uncharacterized protein 98.7 9.4E-08 3.2E-12 87.3 11.9 157 385-578 10-172 (176)
102 2ifu_A Gamma-SNAP; membrane fu 98.7 1.9E-07 6.5E-12 93.9 15.3 220 323-571 4-253 (307)
103 3urz_A Uncharacterized protein 98.7 1.3E-07 4.5E-12 89.0 13.2 125 420-549 60-190 (208)
104 2vsy_A XCC0866; transferase, g 98.7 1.7E-07 5.7E-12 103.4 15.9 161 394-557 2-169 (568)
105 2vsy_A XCC0866; transferase, g 98.7 1.6E-07 5.6E-12 103.5 15.2 152 427-581 2-159 (568)
106 2pzi_A Probable serine/threoni 98.7 3.4E-07 1.2E-11 102.9 17.8 194 356-553 402-610 (681)
107 2vgx_A Chaperone SYCD; alterna 98.6 8.8E-08 3E-12 84.6 9.5 108 471-580 9-119 (148)
108 2uy1_A Cleavage stimulation fa 98.6 1.6E-05 5.5E-10 85.2 28.6 372 122-543 7-411 (493)
109 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.5E-12 78.7 11.8 108 451-559 15-124 (126)
110 2r5s_A Uncharacterized protein 98.6 2.6E-07 9E-12 84.3 12.4 159 347-509 8-169 (176)
111 2uy1_A Cleavage stimulation fa 98.6 5.7E-06 2E-10 88.6 24.7 366 41-442 17-412 (493)
112 3dra_A Protein farnesyltransfe 98.6 3.2E-06 1.1E-10 83.8 20.9 215 324-578 47-286 (306)
113 4gco_A Protein STI-1; structur 98.6 1.9E-07 6.6E-12 79.8 10.4 100 480-579 8-110 (126)
114 3qky_A Outer membrane assembly 98.6 7.5E-07 2.6E-11 87.1 15.9 180 278-477 14-223 (261)
115 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.4E-12 93.8 10.1 193 380-579 3-199 (281)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.1E-06 3.9E-11 82.7 15.4 121 456-580 13-151 (213)
117 3u3w_A Transcriptional activat 98.6 3.9E-06 1.3E-10 83.6 20.0 161 418-578 79-265 (293)
118 3dra_A Protein farnesyltransfe 98.5 2E-05 6.8E-10 78.1 24.3 237 289-558 43-301 (306)
119 2xcb_A PCRH, regulatory protei 98.5 7.8E-07 2.7E-11 77.8 12.2 96 484-579 18-115 (142)
120 3urz_A Uncharacterized protein 98.5 1.1E-06 3.6E-11 82.7 13.8 185 315-524 9-198 (208)
121 2yhc_A BAMD, UPF0169 lipoprote 98.5 9E-07 3.1E-11 84.4 13.4 187 345-551 4-219 (225)
122 3qou_A Protein YBBN; thioredox 98.5 4E-06 1.4E-10 83.2 18.1 160 346-509 118-280 (287)
123 1a17_A Serine/threonine protei 98.5 1.8E-06 6E-11 77.5 13.9 126 451-577 15-144 (166)
124 1na0_A Designed protein CTPR3; 98.5 1.9E-06 6.5E-11 72.7 13.3 114 450-564 10-125 (125)
125 2qfc_A PLCR protein; TPR, HTH, 98.5 2.7E-06 9.1E-11 84.8 16.1 164 415-578 76-265 (293)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.4E-06 1.9E-10 77.9 17.2 144 385-549 10-154 (213)
127 2vyi_A SGTA protein; chaperone 98.4 2.2E-06 7.7E-11 73.0 12.4 115 451-566 14-130 (131)
128 1p5q_A FKBP52, FK506-binding p 98.4 1.5E-06 5.1E-11 88.5 12.6 94 484-577 196-292 (336)
129 2lni_A Stress-induced-phosphop 98.4 2.1E-06 7.3E-11 73.5 11.8 82 484-565 50-133 (133)
130 4f3v_A ESX-1 secretion system 98.4 3.3E-07 1.1E-11 88.7 7.0 184 393-580 18-238 (282)
131 2e2e_A Formate-dependent nitri 98.4 9.6E-07 3.3E-11 80.5 9.7 120 460-580 21-145 (177)
132 3gyz_A Chaperone protein IPGC; 98.4 2.4E-06 8.1E-11 75.3 11.7 105 445-550 31-138 (151)
133 3u3w_A Transcriptional activat 98.4 2.4E-05 8.3E-10 77.8 20.3 159 387-545 81-266 (293)
134 3rjv_A Putative SEL1 repeat pr 98.4 1.5E-05 5.2E-10 74.9 17.6 163 308-480 16-199 (212)
135 3upv_A Heat shock protein STI1 98.4 2.1E-06 7.3E-11 73.1 10.4 96 484-579 4-101 (126)
136 4f3v_A ESX-1 secretion system 98.4 9.8E-07 3.4E-11 85.4 9.0 136 418-557 106-248 (282)
137 2kck_A TPR repeat; tetratricop 98.3 3.3E-06 1.1E-10 69.6 10.6 98 484-581 6-108 (112)
138 1hxi_A PEX5, peroxisome target 98.3 2.1E-06 7.3E-11 72.5 9.1 95 486-580 19-115 (121)
139 2vgx_A Chaperone SYCD; alterna 98.3 1.9E-06 6.4E-11 75.9 8.5 107 446-553 17-126 (148)
140 2ifu_A Gamma-SNAP; membrane fu 98.3 1.4E-06 4.9E-11 87.5 8.6 195 358-577 4-222 (307)
141 3gw4_A Uncharacterized protein 98.3 8.6E-06 2.9E-10 75.7 13.3 60 519-578 110-175 (203)
142 3q49_B STIP1 homology and U bo 98.3 6.2E-06 2.1E-10 71.2 11.4 98 482-579 7-106 (137)
143 3sz7_A HSC70 cochaperone (SGT) 98.2 4.4E-06 1.5E-10 74.9 10.3 96 484-579 11-108 (164)
144 2e2e_A Formate-dependent nitri 98.2 7.3E-06 2.5E-10 74.5 12.0 127 425-553 21-152 (177)
145 1elw_A TPR1-domain of HOP; HOP 98.2 1.7E-05 5.7E-10 66.0 13.1 107 452-559 7-115 (118)
146 2qfc_A PLCR protein; TPR, HTH, 98.2 1.4E-05 4.8E-10 79.5 14.6 162 383-544 77-265 (293)
147 3gw4_A Uncharacterized protein 98.2 6.9E-06 2.4E-10 76.4 11.6 151 393-545 4-176 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.2 8.6E-06 2.9E-10 67.8 11.0 98 483-580 3-102 (118)
149 4gcn_A Protein STI-1; structur 98.2 3.6E-06 1.2E-10 71.8 8.4 94 485-578 9-111 (127)
150 1na0_A Designed protein CTPR3; 98.2 9.8E-06 3.3E-10 68.2 11.0 97 484-580 9-107 (125)
151 3q7a_A Farnesyltransferase alp 98.2 8.2E-05 2.8E-09 74.5 19.1 224 318-579 62-331 (349)
152 3q7a_A Farnesyltransferase alp 98.2 0.00077 2.6E-08 67.4 26.1 177 282-463 57-256 (349)
153 2lni_A Stress-induced-phosphop 98.2 8.8E-06 3E-10 69.5 10.7 97 483-579 15-113 (133)
154 2xcb_A PCRH, regulatory protei 98.2 8.4E-06 2.9E-10 71.1 10.5 106 451-557 20-127 (142)
155 2fbn_A 70 kDa peptidylprolyl i 98.2 1.2E-05 4E-10 74.8 11.8 172 388-579 11-186 (198)
156 2dba_A Smooth muscle cell asso 98.2 1.4E-05 4.8E-10 69.8 11.8 94 485-578 29-127 (148)
157 2dba_A Smooth muscle cell asso 98.1 2.8E-05 9.5E-10 67.8 13.2 109 451-561 30-144 (148)
158 3upv_A Heat shock protein STI1 98.1 2E-05 7E-10 66.8 11.4 109 451-560 6-122 (126)
159 2hr2_A Hypothetical protein; a 98.1 8.4E-06 2.9E-10 71.1 8.8 63 517-579 58-131 (159)
160 1a17_A Serine/threonine protei 98.1 2.4E-05 8.1E-10 69.9 12.3 126 416-543 15-144 (166)
161 3sz7_A HSC70 cochaperone (SGT) 98.1 2.1E-05 7.1E-10 70.5 11.8 107 450-557 12-120 (164)
162 2vyi_A SGTA protein; chaperone 98.1 1.4E-05 4.7E-10 67.9 10.1 98 483-580 11-110 (131)
163 2c2l_A CHIP, carboxy terminus 98.1 2.1E-05 7.2E-10 77.6 12.7 93 247-339 4-101 (281)
164 1wao_1 Serine/threonine protei 98.1 3.6E-05 1.2E-09 82.3 14.7 114 424-540 16-134 (477)
165 3rkv_A Putative peptidylprolyl 98.1 2.1E-05 7.2E-10 70.2 11.0 64 516-579 63-126 (162)
166 1p5q_A FKBP52, FK506-binding p 98.1 4.1E-06 1.4E-10 85.2 6.9 147 395-544 127-293 (336)
167 3dss_A Geranylgeranyl transfer 98.1 0.00036 1.2E-08 69.5 20.4 176 379-557 106-316 (331)
168 3dss_A Geranylgeranyl transfer 98.1 0.0004 1.4E-08 69.2 20.6 181 397-579 90-304 (331)
169 2xev_A YBGF; tetratricopeptide 98.0 1.4E-05 4.9E-10 67.9 8.8 91 489-579 7-105 (129)
170 3q49_B STIP1 homology and U bo 98.0 3.2E-05 1.1E-09 66.6 11.0 99 449-548 9-109 (137)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.2E-05 1.1E-09 82.2 13.1 145 413-578 267-414 (457)
172 4b4t_Q 26S proteasome regulato 98.0 6.9E-05 2.4E-09 79.1 15.3 189 390-578 13-244 (434)
173 1wao_1 Serine/threonine protei 98.0 1.5E-05 5.1E-10 85.2 9.6 119 456-575 13-135 (477)
174 2kck_A TPR repeat; tetratricop 98.0 6.2E-05 2.1E-09 61.7 11.3 98 452-550 9-111 (112)
175 3k9i_A BH0479 protein; putativ 98.0 5.4E-06 1.8E-10 69.5 4.7 83 497-579 3-90 (117)
176 2fbn_A 70 kDa peptidylprolyl i 98.0 1.3E-05 4.3E-10 74.5 7.5 148 352-504 11-176 (198)
177 1elr_A TPR2A-domain of HOP; HO 97.9 2.5E-05 8.7E-10 66.2 8.7 96 484-579 4-108 (131)
178 1ihg_A Cyclophilin 40; ppiase 97.9 4.4E-05 1.5E-09 78.5 12.0 135 416-571 225-362 (370)
179 3ro3_A PINS homolog, G-protein 97.9 4.5E-05 1.5E-09 67.4 10.3 61 518-578 91-157 (164)
180 1hxi_A PEX5, peroxisome target 97.9 4.2E-05 1.5E-09 64.4 9.4 94 455-549 23-118 (121)
181 4gcn_A Protein STI-1; structur 97.9 3.3E-05 1.1E-09 65.7 8.7 92 417-510 11-109 (127)
182 1elr_A TPR2A-domain of HOP; HO 97.9 0.0001 3.6E-09 62.3 11.7 44 516-560 79-122 (131)
183 1dce_A Protein (RAB geranylger 97.9 0.00026 9E-09 77.0 17.4 171 395-568 43-244 (567)
184 3n71_A Histone lysine methyltr 97.9 9.7E-05 3.3E-09 78.4 13.6 122 459-580 319-465 (490)
185 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 78.8 8.8 149 413-580 178-329 (338)
186 2xev_A YBGF; tetratricopeptide 97.9 0.00013 4.4E-09 61.8 11.6 98 457-556 10-116 (129)
187 3k9i_A BH0479 protein; putativ 97.8 1.8E-05 6.3E-10 66.2 5.2 91 462-552 3-97 (117)
188 2hr2_A Hypothetical protein; a 97.8 4E-05 1.4E-09 66.8 7.2 69 486-554 59-140 (159)
189 2l6j_A TPR repeat-containing p 97.8 1.1E-05 3.7E-10 66.6 3.5 93 483-575 3-103 (111)
190 3rkv_A Putative peptidylprolyl 97.8 7.1E-05 2.4E-09 66.7 9.1 76 484-559 63-141 (162)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 6E-05 2.1E-09 76.6 9.5 152 381-550 179-333 (338)
192 4b4t_Q 26S proteasome regulato 97.8 0.00034 1.1E-08 73.7 15.2 97 414-510 135-242 (434)
193 3ma5_A Tetratricopeptide repea 97.7 0.00014 4.9E-09 58.6 8.4 65 515-579 6-70 (100)
194 1ihg_A Cyclophilin 40; ppiase 97.7 0.00021 7.2E-09 73.4 11.7 112 450-579 224-336 (370)
195 3ro3_A PINS homolog, G-protein 97.6 0.00013 4.6E-09 64.3 8.7 131 416-546 11-159 (164)
196 3lvg_A Clathrin heavy chain 1; 97.6 7.2E-06 2.5E-10 82.9 0.1 421 39-507 54-535 (624)
197 1na3_A Designed protein CTPR2; 97.6 0.00018 6.2E-09 56.4 8.4 81 484-564 9-91 (91)
198 1zu2_A Mitochondrial import re 97.6 3.8E-05 1.3E-09 66.8 4.3 85 496-580 14-121 (158)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00047 1.6E-08 73.2 13.7 65 516-580 317-381 (457)
200 2kat_A Uncharacterized protein 97.6 0.00017 5.7E-09 59.9 7.3 78 502-579 3-82 (115)
201 1klx_A Cysteine rich protein B 97.4 0.0012 4.1E-08 56.8 11.4 89 490-580 31-127 (138)
202 3bee_A Putative YFRE protein; 97.4 0.00076 2.6E-08 53.3 8.9 69 513-581 3-74 (93)
203 3n71_A Histone lysine methyltr 97.3 0.0012 4.1E-08 70.0 12.4 121 424-544 319-463 (490)
204 3qwp_A SET and MYND domain-con 97.3 0.00071 2.4E-08 70.7 9.7 116 491-624 294-427 (429)
205 2l6j_A TPR repeat-containing p 97.3 0.00072 2.5E-08 55.2 7.9 66 515-580 3-68 (111)
206 1zu2_A Mitochondrial import re 97.3 0.00025 8.5E-09 61.7 4.9 101 425-550 13-125 (158)
207 1klx_A Cysteine rich protein B 97.2 0.0036 1.2E-07 53.8 11.7 112 428-547 9-128 (138)
208 1dce_A Protein (RAB geranylger 97.1 0.0056 1.9E-07 66.5 15.2 151 428-581 43-223 (567)
209 1na3_A Designed protein CTPR2; 97.0 0.0016 5.5E-08 50.8 7.3 64 516-579 9-72 (91)
210 3qww_A SET and MYND domain-con 96.9 0.0019 6.6E-08 67.2 8.6 62 517-578 341-410 (433)
211 3qww_A SET and MYND domain-con 96.9 0.0044 1.5E-07 64.5 10.9 93 461-553 310-424 (433)
212 2kat_A Uncharacterized protein 96.9 0.0027 9.2E-08 52.3 7.6 63 412-476 17-80 (115)
213 3qwp_A SET and MYND domain-con 96.7 0.0095 3.2E-07 62.1 12.1 97 459-555 297-415 (429)
214 3ly7_A Transcriptional activat 96.7 0.013 4.4E-07 58.5 12.2 66 514-580 275-340 (372)
215 3ly7_A Transcriptional activat 96.7 0.029 9.8E-07 56.1 14.7 143 412-557 192-350 (372)
216 3ma5_A Tetratricopeptide repea 96.6 0.0072 2.5E-07 48.3 8.4 63 412-476 5-68 (100)
217 3mkq_A Coatomer beta'-subunit; 96.6 0.047 1.6E-06 62.4 18.1 130 349-510 633-762 (814)
218 2kc7_A BFR218_protein; tetratr 96.5 0.0095 3.3E-07 47.2 8.4 79 490-576 6-87 (99)
219 2kc7_A BFR218_protein; tetratr 96.5 0.0048 1.7E-07 49.0 6.6 58 523-580 7-65 (99)
220 1pc2_A Mitochondria fission pr 96.3 0.025 8.6E-07 48.5 9.9 64 515-578 31-99 (152)
221 1wy6_A Hypothetical protein ST 96.3 0.12 4.1E-06 42.5 12.9 85 496-582 73-157 (172)
222 3u64_A Protein TP_0956; tetrat 96.1 0.015 5.2E-07 55.5 8.3 86 501-586 180-276 (301)
223 1pc2_A Mitochondria fission pr 95.5 0.039 1.3E-06 47.3 7.5 87 465-552 14-107 (152)
224 2v5f_A Prolyl 4-hydroxylase su 95.3 0.078 2.7E-06 42.5 8.8 73 484-556 5-86 (104)
225 3mkq_A Coatomer beta'-subunit; 95.2 1 3.4E-05 51.2 20.9 132 251-409 633-764 (814)
226 3mkq_B Coatomer subunit alpha; 95.0 0.38 1.3E-05 42.2 12.6 130 388-542 12-141 (177)
227 3mkq_B Coatomer subunit alpha; 95.0 1.3 4.4E-05 38.9 15.9 103 289-409 15-117 (177)
228 1qsa_A Protein (soluble lytic 94.9 5.1 0.00018 43.3 29.4 115 428-544 228-347 (618)
229 3bee_A Putative YFRE protein; 94.9 0.12 4.1E-06 40.4 8.3 68 482-549 4-76 (93)
230 3lvg_A Clathrin heavy chain 1; 94.8 2.4E-05 8.1E-10 79.2 -16.6 264 277-571 52-325 (624)
231 4gns_B Protein CSD3, chitin bi 94.5 0.11 3.8E-06 57.3 9.7 53 525-577 346-398 (754)
232 1wy6_A Hypothetical protein ST 93.8 2.4 8.4E-05 35.0 14.3 140 321-481 18-157 (172)
233 1nzn_A CGI-135 protein, fissio 93.2 0.52 1.8E-05 38.8 9.0 86 463-549 15-107 (126)
234 3u64_A Protein TP_0956; tetrat 93.2 0.14 4.7E-06 49.0 6.4 77 431-509 180-265 (301)
235 1y8m_A FIS1; mitochondria, unk 92.4 2.9 0.0001 34.9 12.5 47 532-578 58-105 (144)
236 1nzn_A CGI-135 protein, fissio 92.4 0.95 3.3E-05 37.2 9.5 86 428-515 15-106 (126)
237 2v5f_A Prolyl 4-hydroxylase su 91.9 0.53 1.8E-05 37.4 7.7 65 515-579 4-75 (104)
238 2wpv_A GET4, UPF0363 protein Y 90.4 14 0.00046 36.0 19.2 134 146-291 35-177 (312)
239 4h7y_A Dual specificity protei 88.4 1.5 5.1E-05 37.1 7.3 53 530-582 74-126 (161)
240 2wpv_A GET4, UPF0363 protein Y 85.6 27 0.00093 33.8 19.9 164 284-476 38-215 (312)
241 3o48_A Mitochondria fission 1 85.6 4.3 0.00015 33.5 8.5 69 481-549 37-111 (134)
242 4h7y_A Dual specificity protei 84.7 8.5 0.00029 32.5 10.0 96 70-168 10-118 (161)
243 4gns_B Protein CSD3, chitin bi 83.5 5.2 0.00018 44.2 10.8 56 251-306 341-398 (754)
244 3lpz_A GET4 (YOR164C homolog); 82.4 38 0.0013 33.0 22.7 164 284-476 40-214 (336)
245 3ffl_A Anaphase-promoting comp 80.9 11 0.00039 32.4 9.6 25 488-512 126-150 (167)
246 1v54_E Cytochrome C oxidase po 80.7 11 0.00037 29.3 8.3 63 88-152 25-87 (109)
247 4b4t_P 26S proteasome regulato 80.4 56 0.0019 33.6 17.7 186 384-581 180-388 (445)
248 2ff4_A Probable regulatory pro 80.4 3.3 0.00011 42.1 7.4 68 519-586 174-246 (388)
249 3ffl_A Anaphase-promoting comp 80.0 14 0.00048 31.8 9.9 129 274-416 13-157 (167)
250 2ff4_A Probable regulatory pro 79.5 10 0.00034 38.5 10.7 68 419-487 176-248 (388)
251 4b4t_P 26S proteasome regulato 79.2 61 0.0021 33.3 20.9 94 417-510 140-244 (445)
252 2uwj_G Type III export protein 78.9 15 0.0005 28.4 8.4 87 123-214 20-106 (115)
253 1v54_E Cytochrome C oxidase po 78.6 11 0.00038 29.2 7.8 62 429-492 25-87 (109)
254 3txn_A 26S proteasome regulato 78.2 38 0.0013 34.1 14.3 55 455-509 105-164 (394)
255 4fhn_B Nucleoporin NUP120; pro 78.2 36 0.0012 40.1 16.4 168 282-467 815-989 (1139)
256 2p58_C Putative type III secre 77.7 15 0.00053 28.3 8.2 87 123-214 21-107 (116)
257 2uwj_G Type III export protein 76.4 24 0.00083 27.2 9.3 62 285-349 45-106 (115)
258 2p58_C Putative type III secre 75.4 26 0.00089 27.1 10.1 61 285-348 46-106 (116)
259 1y8m_A FIS1; mitochondria, unk 74.7 36 0.0012 28.4 11.9 69 482-550 37-111 (144)
260 3lpz_A GET4 (YOR164C homolog); 73.9 69 0.0024 31.3 26.2 169 146-337 37-214 (336)
261 1zbp_A Hypothetical protein VP 70.5 38 0.0013 31.8 11.0 50 460-510 8-57 (273)
262 2y69_E Cytochrome C oxidase su 69.8 26 0.0009 28.8 8.3 63 88-152 68-130 (152)
263 4ady_A RPN2, 26S proteasome re 67.0 1.7E+02 0.006 33.1 29.2 39 60-101 220-258 (963)
264 2y69_E Cytochrome C oxidase su 66.4 27 0.00094 28.7 7.8 60 431-492 70-130 (152)
265 4fhn_B Nucleoporin NUP120; pro 66.2 1.4E+02 0.0048 35.1 17.6 126 213-338 902-1049(1139)
266 1zbp_A Hypothetical protein VP 64.0 13 0.00043 35.0 6.3 56 493-548 6-63 (273)
267 1wdy_A 2-5A-dependent ribonucl 61.4 79 0.0027 29.4 12.2 16 493-508 225-240 (285)
268 3o48_A Mitochondria fission 1 58.8 75 0.0026 26.1 10.4 73 445-517 36-112 (134)
269 3ltm_A Alpha-REP4; protein eng 57.0 1E+02 0.0036 27.2 19.0 80 379-464 93-172 (211)
270 3ltm_A Alpha-REP4; protein eng 55.2 1.1E+02 0.0038 27.0 20.7 170 276-460 30-199 (211)
271 4b4t_R RPN7, 26S proteasome re 54.8 52 0.0018 33.7 9.9 60 417-476 134-195 (429)
272 3ltj_A Alpharep-4; protein eng 54.2 1.1E+02 0.0038 26.7 19.3 34 277-310 26-59 (201)
273 3esl_A Checkpoint serine/threo 53.3 1.1E+02 0.0039 27.2 10.3 85 398-483 61-149 (202)
274 1bpo_A Protein (clathrin); cla 53.2 1.5E+02 0.0052 30.3 12.3 139 261-409 343-484 (494)
275 4ady_A RPN2, 26S proteasome re 52.0 3.1E+02 0.011 31.1 30.9 217 289-510 384-620 (963)
276 1n11_A Ankyrin; clathrin, BAND 50.8 1.7E+02 0.0057 29.5 13.4 17 493-509 317-333 (437)
277 4b4t_R RPN7, 26S proteasome re 50.8 43 0.0015 34.3 8.5 94 383-476 133-235 (429)
278 3mv2_A Coatomer subunit alpha; 44.9 1.1E+02 0.0038 29.5 9.5 60 506-579 195-256 (325)
279 2qx5_A Nucleoporin NIC96; mRNA 42.9 3.5E+02 0.012 29.2 16.1 44 75-121 155-198 (661)
280 3eu9_A Huntingtin-interacting 42.9 95 0.0032 27.9 9.1 83 497-580 152-237 (240)
281 3kea_A K1L; tropism, ANK repea 42.6 82 0.0028 29.7 8.8 91 489-583 131-221 (285)
282 1wdy_A 2-5A-dependent ribonucl 40.7 2.2E+02 0.0074 26.2 12.3 57 148-209 6-66 (285)
283 2l0z_A Glycoprotein G2; zinc-b 40.3 9.6 0.00033 23.5 0.9 10 709-718 20-29 (42)
284 3hra_A Ankyrin repeat family p 36.7 1.9E+02 0.0064 25.0 9.8 17 290-306 13-29 (201)
285 4fke_A Aminopeptidase N; zinc 36.5 5.2E+02 0.018 29.3 16.2 156 386-547 691-862 (909)
286 1k1a_A B-cell lymphoma 3-encod 35.1 2E+02 0.0068 25.7 10.0 21 321-341 17-37 (241)
287 2zu6_B Programmed cell death p 34.9 2.9E+02 0.0099 26.5 11.0 57 147-203 6-66 (307)
288 4a1g_A Mitotic checkpoint seri 34.6 2.1E+02 0.0071 24.1 9.5 53 431-483 82-135 (152)
289 2nsz_A Programmed cell death p 34.5 1.1E+02 0.0037 25.0 6.9 61 282-342 10-75 (129)
290 2nsz_A Programmed cell death p 33.3 1.1E+02 0.0038 24.9 6.7 64 147-210 10-78 (129)
291 3jxi_A Vanilloid receptor-rela 32.9 84 0.0029 28.9 7.0 53 317-369 9-70 (260)
292 4a1g_A Mitotic checkpoint seri 32.6 2.2E+02 0.0077 23.9 8.5 54 90-143 82-135 (152)
293 2zu6_B Programmed cell death p 32.2 2.3E+02 0.0078 27.2 9.7 193 385-581 7-233 (307)
294 2k0q_A Putative uncharacterize 31.1 14 0.00049 26.0 0.7 22 695-716 8-29 (74)
295 2wvi_A Mitotic checkpoint seri 30.4 2.6E+02 0.0088 23.9 10.0 54 431-484 77-131 (164)
296 3txn_A 26S proteasome regulato 29.3 4.4E+02 0.015 26.3 30.0 285 250-581 22-345 (394)
297 3b7b_A Euchromatic histone-lys 28.6 1.2E+02 0.004 27.4 7.0 17 562-578 219-235 (237)
298 2qx5_A Nucleoporin NIC96; mRNA 28.3 5.1E+02 0.018 27.9 12.6 25 177-201 355-382 (661)
299 1bd8_A P19INK4D CDK4/6 inhibit 28.0 1.3E+02 0.0045 24.7 6.8 54 389-448 7-62 (156)
300 3ygs_P Procaspase 9; apoptosis 27.8 53 0.0018 25.3 3.6 37 56-92 51-87 (97)
301 3i5p_A Nucleoporin NUP170; hel 27.5 4.8E+02 0.016 27.2 11.8 68 513-580 175-247 (525)
302 3jxi_A Vanilloid receptor-rela 27.5 1.1E+02 0.0039 28.0 6.8 54 184-237 11-73 (260)
303 3hra_A Ankyrin repeat family p 27.3 2.6E+02 0.009 23.9 9.1 146 56-211 16-174 (201)
304 2d2s_A Exocyst complex compone 27.3 2.3E+02 0.008 25.9 8.5 29 481-509 88-116 (235)
305 3bqo_A Telomeric repeat-bindin 27.0 2.8E+02 0.0095 24.5 8.2 57 500-556 94-157 (211)
306 1oyz_A Hypothetical protein YI 26.7 3.8E+02 0.013 24.7 20.8 22 420-442 241-262 (280)
307 1qsa_A Protein (soluble lytic 26.6 6.2E+02 0.021 27.1 40.8 79 39-123 72-150 (618)
308 2ion_A PDCD4, programmed cell 26.5 1.1E+02 0.0038 25.8 5.7 61 282-342 12-77 (152)
309 1oyz_A Hypothetical protein YI 26.5 3.8E+02 0.013 24.7 21.3 17 379-395 140-156 (280)
310 3esl_A Checkpoint serine/threo 26.3 3.4E+02 0.012 24.1 13.5 88 518-631 82-171 (202)
311 1k1a_A B-cell lymphoma 3-encod 26.2 2.5E+02 0.0086 25.0 9.0 23 186-208 17-39 (241)
312 4aez_C MAD3, mitotic spindle c 25.9 2.9E+02 0.01 25.0 8.6 118 21-143 51-184 (223)
313 2pk8_A Uncharacterized protein 24.8 50 0.0017 24.8 2.7 45 608-660 14-58 (103)
314 3ltj_A Alpharep-4; protein eng 24.5 3.4E+02 0.012 23.4 20.8 61 276-337 118-178 (201)
315 4gq2_M Nucleoporin NUP120; bet 23.5 5E+02 0.017 29.6 12.2 111 447-564 810-950 (950)
316 2wvi_A Mitotic checkpoint seri 23.5 3.5E+02 0.012 23.1 9.4 83 58-146 46-133 (164)
317 4aez_C MAD3, mitotic spindle c 23.4 3.2E+02 0.011 24.7 8.3 52 431-482 131-183 (223)
318 2ion_A PDCD4, programmed cell 23.2 3.1E+02 0.011 23.0 7.9 71 250-320 12-86 (152)
319 3aji_A 26S proteasome non-ATPa 22.9 3.3E+02 0.011 23.9 9.1 18 492-509 111-128 (231)
320 3ljn_A Hypothetical protein; a 22.9 3.8E+02 0.013 25.9 10.1 18 492-509 249-266 (364)
321 2ko4_A Mediator of RNA polymer 22.2 1.4E+02 0.0048 21.7 4.5 40 401-440 23-62 (81)
322 2d2s_A Exocyst complex compone 22.1 2.8E+02 0.0096 25.3 8.0 21 182-202 25-45 (235)
323 2r9g_A AAA ATPase, central reg 22.0 4.1E+02 0.014 23.5 9.4 47 417-464 14-63 (204)
324 2fe3_A Peroxide operon regulat 21.5 2.3E+02 0.0077 23.5 6.8 47 178-224 24-70 (145)
325 1ya0_A SMG-7 transcript varian 21.5 1.9E+02 0.0065 30.1 7.5 41 530-570 166-206 (497)
326 1oai_A Nuclear RNA export fact 21.3 57 0.0019 22.4 2.3 25 86-110 33-57 (59)
327 3kea_A K1L; tropism, ANK repea 20.9 2.6E+02 0.0088 26.1 8.0 13 56-68 42-54 (285)
328 2lo3_A SAGA-associated factor 20.6 33 0.0011 21.4 0.8 10 675-684 16-25 (44)
329 4b4t_S RPN3, 26S proteasome re 20.4 1.6E+02 0.0054 30.7 6.4 61 450-510 232-296 (523)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-42 Score=389.56 Aligned_cols=484 Identities=9% Similarity=-0.046 Sum_probs=308.0
Q ss_pred HHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcH
Q 047480 47 SFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFK 126 (719)
Q Consensus 47 ~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~ 126 (719)
..+.+ + |.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.... |+..++..++.+|.+.|+++
T Consensus 61 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 61 NNTST--D-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHH
T ss_pred ccccc--c-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHH
Confidence 34566 7 889999999999999999999999999999999999999999999755 88899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC-------------------ChhhHHHHHHHHHc
Q 047480 127 SGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR-------------------DLVSYNTLINGYAQ 187 (719)
Q Consensus 127 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~ 187 (719)
+|.++++.+... ++++.+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999987643 688999999999999999999999999964433 47899999999999
Q ss_pred CCCcchHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCcHH--HHHH-HHHHHHhhCCCCCchHHHHHHHHHHHhcCCh
Q 047480 188 VKEPCPALWLFRKMQDSCIQPDAFT-FVAMFSACTELNDPRI--GKQF-HAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263 (719)
Q Consensus 188 ~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~--a~~i-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 263 (719)
.|++++|+++|++|.+.+ |+..+ +..+...+...+..+. ...+ +..+...
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------ 266 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE------------------------ 266 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG------------------------
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc------------------------
Confidence 999999999999998753 54433 3333332222211111 0111 2222222
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC
Q 047480 264 NMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGI 341 (719)
Q Consensus 264 ~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 341 (719)
+..+...+|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+
T Consensus 267 ----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 267 ----------DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp ----------GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ----------hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 2223334455555666666666666666666655 556666666666666666666666666666543
Q ss_pred CCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHH
Q 047480 342 HPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSI 420 (719)
Q Consensus 342 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~l 420 (719)
+.+..++..++.++...|+.++|.+++. .+.+.. +.+..+++.++.+|.++|++++|.++|+++.+. +.+..+|+.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISN-DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHH-HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2245556666666666666666666666 333222 345556666666666666666666666655432 3455566666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCH
Q 047480 421 ISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 500 (719)
+.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 666666666666666666666542 2345566666666666666666666666666432 23455666666666666666
Q ss_pred HHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 501 DEAYGLIQSM-------PYDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 501 ~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
++|.++|+++ +..|+ ..+|..++.+|...|++++|+..++++++++|+++.+|..++.+|.+.|++++|.+
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 6666666655 23454 45666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q 047480 572 VRKLMDDS 579 (719)
Q Consensus 572 ~~~~m~~~ 579 (719)
.++++.+.
T Consensus 572 ~~~~~l~~ 579 (597)
T 2xpi_A 572 HLHESLAI 579 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=365.86 Aligned_cols=463 Identities=9% Similarity=-0.018 Sum_probs=362.9
Q ss_pred HHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 047480 83 YSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162 (719)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 162 (719)
+...|....+...+..+.. ++...|..++..|.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL-----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccchH-----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHH
Confidence 3445555556555554431 67788999999999999999999999999865 4677899999999999999999
Q ss_pred HHHHHccC--CCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 047480 163 AHKVFEGS--LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNL 240 (719)
Q Consensus 163 A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 240 (719)
|..+|+++ ..++..+|+.++.+|.+.|++++|+++|+++. |+.. ...++...++. .
T Consensus 136 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-------------~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-------------D 193 (597)
T ss_dssp HHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-------------C
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-------------c
Confidence 99999998 45789999999999999999999999998532 2220 01111111111 1
Q ss_pred CCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHH--H-HhhcCC----CChh
Q 047480 241 GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKIERARQ--L-FDQMDQ----RDLV 311 (719)
Q Consensus 241 ~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~--~-f~~m~~----~~~~ 311 (719)
.+.+.+..+++.++.+|.+.|++++|...|+++ .. +.+...+..+...+...+..+.+.. + |..+.. ....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 255667788888888888888888888888887 22 3345566666665554433322211 1 222222 2334
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047480 312 SWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY 391 (719)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 391 (719)
+|+.++..|.+.|++++|.++|++|.+. +++..++..++.++.+.|++++|.++++ .+.+.+ +.+..+++.++..|
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT-KILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHcC-cccHHHHHHHHHHH
Confidence 6777788999999999999999999876 6899999999999999999999999999 555444 45788899999999
Q ss_pred HhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 047480 392 AKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
.+.|++++|..+|+++... +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988654 5678899999999999999999999999999842 3346799999999999999999999
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL--- 545 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 545 (719)
+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++. .+.+..+|..++..+.+.|++++|...++++++.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 999999654 4468899999999999999999999999982 2347889999999999999999999999999987
Q ss_pred ---CCCC-chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 546 ---EPDH-GAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 546 ---~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|++ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5654 5789999999999999999999999998765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.4e-25 Score=232.26 Aligned_cols=372 Identities=12% Similarity=0.102 Sum_probs=270.6
Q ss_pred HHHHcCCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcC
Q 047480 183 NGYAQVKEPCPALWLFRKMQDSCIQPDAF-TFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCG 261 (719)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g 261 (719)
..+.+.|++++|++.+..+.+. .|+.. .+..+...+...|+++.+...+..+.+. .|.+..++..+...|.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCC
Confidence 3445556666666666665543 23332 3333344455566666666666666654 4555666666666666666
Q ss_pred ChHHHHHHHHHc-CCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 047480 262 LMNMAERVFSTM-GMSK-STAAWSSMISGYTREGKIERARQLFDQMDQ--R-DLVSWTAMISGYSQVGGFSQALELFGKM 336 (719)
Q Consensus 262 ~~~~a~~~~~~~-~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (719)
++++|...++++ ...| +...+..+...|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666665 3333 445677788888888888888888877653 3 3445667777777788888888888888
Q ss_pred HhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChh
Q 047480 337 ESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVS 415 (719)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~ 415 (719)
.+.. +.+..++..+...+...|++++|...++ .+.+.. +.+...+..+...+...|++++|...|++.... +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE-KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 7652 2345677777778888888888888887 444433 345667777888888888888888888776544 45677
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLL 494 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 494 (719)
+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|++++|.+.|+++.+.. +.+...+..+..++
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 8888888899999999999999988874 454 4578888888888999999999999888643 45578888888999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 495 ARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++.+|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998887 3444 567888888888899999999999999999999988888888888877653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.4e-27 Score=252.86 Aligned_cols=200 Identities=11% Similarity=0.104 Sum_probs=171.0
Q ss_pred HHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC---------hH
Q 047480 297 RARQLFDQMDQR-----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA---------LD 362 (719)
Q Consensus 297 ~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~ 362 (719)
.+..+++.+.++ ....++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555442 2345788899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
.|.++|+ .|...|+.||..+|++||++|++.|++++|.++|++|... .||..+||++|.+|++.|+.++|.++|++|
T Consensus 88 ~A~~lf~-~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFK-QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999 7888899999999999999999999999999999998765 689999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc
Q 047480 441 ELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD 497 (719)
Q Consensus 441 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 497 (719)
.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..+|+.+++.|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.7e-24 Score=226.85 Aligned_cols=352 Identities=13% Similarity=0.119 Sum_probs=308.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCH
Q 047480 218 SACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKI 295 (719)
Q Consensus 218 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~ 295 (719)
..+.+.|+++.|.+.+..+.+. .|.+...+..+...+...|+.++|...++.. ..+.+..+|..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 4456789999999999999887 5677788889999999999999999999887 4566788999999999999999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHHHHHHHHH
Q 047480 296 ERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFGKRLHQQY 371 (719)
Q Consensus 296 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 371 (719)
++|...|+++.+ .+..+|..+...+.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~- 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK- 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH-
Confidence 999999998863 34567999999999999999999999999886 454 44566777888899999999999994
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 047480 372 IENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-G 449 (719)
Q Consensus 372 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 449 (719)
+.+.. +.+..++..+...|.+.|++++|...|+++... +.+...|..+...+...|++++|+..|++..+. .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 44433 456788999999999999999999999998765 466778999999999999999999999999874 565 5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~ 527 (719)
.++..+...+...|++++|.+.|+++.+.. +.+...|..+..+|.+.|++++|.+.++++ . .+++..+|..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 788999999999999999999999999743 234778999999999999999999999987 2 3447789999999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|...+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999864
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=9e-27 Score=250.43 Aligned_cols=212 Identities=12% Similarity=0.146 Sum_probs=170.1
Q ss_pred HHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC
Q 047480 91 EALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGS 170 (719)
Q Consensus 91 ~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 170 (719)
.+..+.+++.+.+..+.....++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3445566666666541223457778888888888888888888888888888888888888888877654332
Q ss_pred CCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHH
Q 047480 171 LARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLK 250 (719)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 250 (719)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.++++.|.+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------- 134 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF----------- 134 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------
Confidence 234556889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCh
Q 047480 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGGF 326 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~ 326 (719)
|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.
T Consensus 135 -----------------------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 135 -----------------------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp -----------------------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 8899999999999999999999999999999864 7999999999999999999
Q ss_pred hHHHHHHHHhHhcCCCCChhHHHHHHHHHHcc
Q 047480 327 SQALELFGKMESLGIHPDEVTMVAVLRACVGL 358 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (719)
++|.++|++|.+.|..|+..||+.++..++..
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.8e-22 Score=219.66 Aligned_cols=449 Identities=8% Similarity=-0.074 Sum_probs=235.8
Q ss_pred cHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047480 74 FIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHF 153 (719)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 153 (719)
..|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 456667777888888888888888888776 777788888888888888888888888888776 4556677777778
Q ss_pred HHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHH
Q 047480 154 YSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGK 230 (719)
Q Consensus 154 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 230 (719)
|.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-.......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------- 155 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-------
Confidence 8888888888877765432 233334444444333322233333333332222222222111100000000
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC
Q 047480 231 QFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR---EGKIERARQLFDQMDQ 307 (719)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~---~g~~~~A~~~f~~m~~ 307 (719)
...|+....... .......... .....+.+...+..+...+.. .|++++|...|+++.+
T Consensus 156 -----------~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 156 -----------ENLPSVTSMASF----FGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp ------------CCCCHHHHHHH----HTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred -----------cCCchhHHHHHH----HhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 000110000000 0000000000 000001223333333333333 5666666666655432
Q ss_pred -----------------CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHH
Q 047480 308 -----------------RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQ 370 (719)
Q Consensus 308 -----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 370 (719)
.+..+|..+...+...|++++|+..|+++.... |+..++..+..++...|+++.|...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~- 294 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD- 294 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH-
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH-
Confidence 123355566666666666677766666666543 225555555666666666666666666
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 047480 371 YIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG 449 (719)
Q Consensus 371 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 449 (719)
.+.+.. +.+..++..+...|.+.|++++|...|++.... +.+...|..+...|...|++++|+..|+++.+.. +.+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 333322 234455556666666666666666666654433 3445556666666666666666666666666531 2233
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CccC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYG-IKPQ----MEHYGCMVDLLAR---DGRLDEAYGLIQSM-PYDA-NSVIW 519 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~ 519 (719)
.++..+...+...|++++|...++.+.+.. -.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 455556666666666666666666665321 0111 2255666666666 66666666666654 1222 44555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 520 RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
..+...+...|+.++|...+++++++.|+++..+..+
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5666666666666666666666666666655544433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-21 Score=214.76 Aligned_cols=426 Identities=11% Similarity=-0.039 Sum_probs=284.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTEL 223 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 223 (719)
.+..+...|.+.|++++|...|+++.. ||..+|..+..+|.+.|++++|+..|+++.+.+ +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 344455555566666666666655432 455556666666666666666666666655432 22334555555555556
Q ss_pred CCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc---CCCCchHHHHHH---HHHHHhcCCHHH
Q 047480 224 NDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM---GMSKSTAAWSSM---ISGYTREGKIER 297 (719)
Q Consensus 224 ~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~---~~~~~~~~~~~l---i~~y~~~g~~~~ 297 (719)
|+++.|...+..+.+. .+++......++..+.+......+.+.+..+ +..|+....... ............
T Consensus 87 g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLN---GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TCHHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred hhHHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 6666666666555554 1222222233333333322222222222111 111111000000 000000111111
Q ss_pred HHHHHhhcCC---------C-ChhhHHHHHHHHHh---cCChhHHHHHHHHhHh-----cCCCC--------ChhHHHHH
Q 047480 298 ARQLFDQMDQ---------R-DLVSWTAMISGYSQ---VGGFSQALELFGKMES-----LGIHP--------DEVTMVAV 351 (719)
Q Consensus 298 A~~~f~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 351 (719)
+...+..... + +...|......+.. .|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112222111 1 13344444454554 8999999999999987 31122 34567778
Q ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCCh
Q 047480 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLG 430 (719)
Q Consensus 352 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 430 (719)
...+...|+++.|...+. .+.+.. |+..++..+...|...|++++|...|+++... +.+...|..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~-~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIK-KAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHH-HHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHH-HHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999 444444 22888899999999999999999999987765 56778899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
++|+..|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999853 2345688889999999999999999999998642 335778899999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 511 ----PYDAN----SVIWRALLAACRL---HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 511 ----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+..|+ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3488889999999 999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 047480 580 G 580 (719)
Q Consensus 580 ~ 580 (719)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.6e-21 Score=209.84 Aligned_cols=325 Identities=14% Similarity=0.071 Sum_probs=261.1
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 047480 243 VGSNMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMI 317 (719)
Q Consensus 243 ~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 317 (719)
.|.+...+..+...|.+.|++++|...++++ ..+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4556667777777777777777777777776 3345677888888888888888888888887754 4566788888
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCCh----hHHHHH------------HHHHHccCChHHHHHHHHHHHHHcCCCCCh
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPDE----VTMVAV------------LRACVGLGALDFGKRLHQQYIENVVFGRNI 381 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (719)
..|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+.+ +.+.. +.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~-~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK-ILEVC-VWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHC-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhC-CCCh
Confidence 8888888888888888888765 3433 344444 3447888999999999994 44433 4577
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHH----
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV-TFVTV---- 455 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l---- 455 (719)
.++..+..+|.+.|++++|...|+++... +.+..+|+.+...|...|++++|+..|+++.+. .|+.. .+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 88899999999999999999999988665 578889999999999999999999999999974 56554 34333
Q ss_pred --------HHHHhccCcHHHHHHHHHHHHHcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047480 456 --------LCACSHGGLVEEGKQFFESMLNYGIKPQ-----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWR 520 (719)
Q Consensus 456 --------l~a~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 520 (719)
...|.+.|++++|..+|+.+.+. .|+ ..++..++.++.+.|++++|++.++++ ...| +..+|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999999963 344 458899999999999999999999987 3344 678999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH------------HHHhhcC-----ChHHHHHHHHH
Q 047480 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS------------NMLAETY-----RWEEARQVRKL 575 (719)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~ 575 (719)
.+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 5566666 55566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.5e-21 Score=213.48 Aligned_cols=432 Identities=8% Similarity=-0.035 Sum_probs=242.8
Q ss_pred ccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 73 IFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
...|..+...+.+.|++++|++.|+++.+.. |.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4567888999999999999999999999877 3567788888889999999999999999999886 556778888888
Q ss_pred HHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHC------CCCCChhhHHHHHHHHhccCCc
Q 047480 153 FYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDS------CIQPDAFTFVAMFSACTELNDP 226 (719)
Q Consensus 153 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~ 226 (719)
+|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+......
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----------- 169 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----------- 169 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-----------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH-----------
Confidence 888889999998888643 223333333344555555556777777776542 11122222111
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 047480 227 RIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKS-TAAWSSMISGYTREGKIERARQLFDQ 304 (719)
Q Consensus 227 ~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (719)
|....+.+.+...+.+. ...+. ......+...|...+
T Consensus 170 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 208 (537)
T 3fp2_A 170 ------------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD----------- 208 (537)
T ss_dssp ------------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------
T ss_pred ------------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh-----------
Confidence 11111111111111111 11111 112222322222211
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC--------hhHHHHHHHHHHccCChHHHHHHHHHHHHHcC
Q 047480 305 MDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD--------EVTMVAVLRACVGLGALDFGKRLHQQYIENVV 376 (719)
Q Consensus 305 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 376 (719)
-......|++++|+.+|+++.+. .|+ ..++..+...+...|++++|...+. ...+..
T Consensus 209 ------------~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~-~~~~~~ 273 (537)
T 3fp2_A 209 ------------EGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ-ESINLH 273 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC
T ss_pred ------------hhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHHhcC
Confidence 00000112344444444444432 122 1123333334444455555555555 222221
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047480 377 FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTV 455 (719)
Q Consensus 377 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 455 (719)
|+..++..+...|...|++++|...|+++... +.+..+|..+...|...|++++|++.|++..+.. +.+..++..+
T Consensus 274 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 350 (537)
T 3fp2_A 274 --PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQL 350 (537)
T ss_dssp --CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHH
T ss_pred --CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 22444455555555555555555555554332 3445566666666666666666666666666532 1223456666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHH
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYDA----NSVIWRALLAACR 527 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p----~~~~~~~ll~~~~ 527 (719)
...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++ +..+ ....+..+...+.
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 666666677777777766666432 223556666666677777777777666664 1111 1122333334455
Q ss_pred hc----------CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 528 LH----------RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 528 ~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.. |++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55 77777777777777777777777777777777777777777777777654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=5.8e-20 Score=197.65 Aligned_cols=366 Identities=13% Similarity=0.037 Sum_probs=241.1
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAV 253 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~l 253 (719)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+. .|.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---KMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcHHHHHHH
Confidence 56789999999999999999999999998752 346777888888888999999999999998887 34456666777
Q ss_pred HHHHHhcCChHHHHHHHHHc-CCCCc-h---HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 047480 254 INMYAKCGLMNMAERVFSTM-GMSKS-T---AAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQ 328 (719)
Q Consensus 254 i~~y~~~g~~~~a~~~~~~~-~~~~~-~---~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 328 (719)
...|.+.|++++|...++++ ...|+ . ..+..++..+... .+..+...+...|++++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHH
Confidence 77777777777777777666 33333 2 4444444332111 11122334556666666
Q ss_pred HHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 047480 329 ALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP 408 (719)
Q Consensus 329 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 408 (719)
|+..|+++.+.. +.+..++..+..++...|++++|...+.+.+... +.+..++..+...|.+.|++++|...|+++.
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666542 3345556666666666666666666666333221 3455666667777777777777777776654
Q ss_pred CC-CCChhcHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHH
Q 047480 409 KN-LKTVSLFNSI------------ISGLAQHGLGETSIAVFREMELMGLKPD-----GVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 409 ~~-~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
.. +.+...|..+ ...+...|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 43 2344444444 67778888888888888888773 454 2366777778888888888888
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----C
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN-SVIWRALLAA------------CRLHR-----N 531 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~ 531 (719)
.++.+.+.. +.+...|..+..+|.+.|++++|.+.++++ ...|+ ...+..+..+ |...| +
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 888877532 234677888888888888888888888876 45554 4455555422 23333 5
Q ss_pred hhHHHHHHHH-HhccCCCCch----------hHHHHHHHHhhcCChHH
Q 047480 532 AKIGEIAGQK-LLDLEPDHGA----------HYVLLSNMLAETYRWEE 568 (719)
Q Consensus 532 ~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 568 (719)
.+++.+.+++ +++..|++.. .+..+..+|...|+.+.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6777888886 7778887532 33445555555554433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=4.7e-19 Score=195.26 Aligned_cols=438 Identities=10% Similarity=-0.000 Sum_probs=300.0
Q ss_pred chHHHHHHHhhccCCCCChHHHHHHhccCCC---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHH
Q 047480 40 ISSSQLISFFALSGCKNGLFRSRILFSQIDN---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116 (719)
Q Consensus 40 ~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll 116 (719)
..+..+...|.+ . |++++|...|+++.. .+..+|..+..+|.+.|++++|++.|+++.+.. |.+..++..+.
T Consensus 26 ~~~~~~g~~~~~--~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFT--A-KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHH--T-TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--h-ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345667778888 8 999999999998743 467789999999999999999999999999877 35677888999
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC------ChhhHHHHHHHHHcCCC
Q 047480 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKE 190 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~ 190 (719)
.++...|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... .....+..+..+....+
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999996 4322 222 2223344555666678888888876542 12223444555666666
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 047480 191 PCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVF 270 (719)
Q Consensus 191 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~ 270 (719)
.+.++..+..... ..|....+...+..... ..+
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~------------------------------------~~~--------- 208 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYS------------------------------------ATD--------- 208 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHT------------------------------------CSH---------
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHH------------------------------------hhh---------
Confidence 6555544433221 11221111111111100 000
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--------hhhHHHHHHHHHhcCChhHHHHHHHHhHhcC
Q 047480 271 STMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RD--------LVSWTAMISGYSQVGGFSQALELFGKMESLG 340 (719)
Q Consensus 271 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 340 (719)
-......|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|+++...
T Consensus 209 ---------------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~- 272 (537)
T 3fp2_A 209 ---------------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL- 272 (537)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---------------hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-
Confidence 0001112334444444444433 11 123555566777788888888888888775
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHH
Q 047480 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNS 419 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~ 419 (719)
.|+..++..+...+...|+++.|...+.+ +.+.. +.+..++..+...|.+.|++++|...|++.... +.+...|..
T Consensus 273 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 273 -HPTPNSYIFLALTLADKENSQEFFKFFQK-AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp -CCCHHHHHHHHHHTCCSSCCHHHHHHHHH-HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred -CCCchHHHHHHHHHHHhcCHHHHHHHHHH-HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45567777778888888888888888884 43333 356777888888999999999999999887654 456778999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-c----ChhHHHHHHHHH
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK-P----QMEHYGCMVDLL 494 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p----~~~~~~~li~~~ 494 (719)
+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.... + ....+..+...|
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998852 334568888888999999999999999998743211 1 112244556778
Q ss_pred Hhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 495 ARD----------GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 495 ~~~----------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
.+. |++++|...++++ ...| +..+|..+...+...|+.++|...+++++++.|+++....
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 888 9999999999987 2334 6678999999999999999999999999999998765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.2e-17 Score=173.23 Aligned_cols=305 Identities=12% Similarity=0.053 Sum_probs=212.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 047480 246 NMLLKTAVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGY 320 (719)
Q Consensus 246 ~~~~~~~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 320 (719)
|+..+..+...+...|++++|...+++. ..+.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677777777788888888777776 3334566777777777777777777777776643 3456677777777
Q ss_pred HhcCChhHHHHHHHHhHhcCCCC---C-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 047480 321 SQVGGFSQALELFGKMESLGIHP---D-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS 396 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 396 (719)
...|++++|+..|+++.+. .| + ...+..+.... . ......+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~-----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E-----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H-----------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H-----------------HHHHHHHHHHHHHccC
Confidence 7777777777777777764 33 2 22222221100 0 0112234566777788
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESM 475 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (719)
+++|...|+++... +.+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888776544 4566677778888888888888888888877642 334557777777788888888888888887
Q ss_pred HHcCCccC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCChhHHH
Q 047480 476 LNYGIKPQ-MEHYG------------CMVDLLARDGRLDEAYGLIQSM-PYDAN-SV----IWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 476 ~~~g~~p~-~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~----~~~~ll~~~~~~g~~~~a~ 536 (719)
.+.. |+ ...+. .+...+.+.|++++|.+.++++ ...|+ .. .|..+...+...|++++|.
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7532 33 22222 2366788899999999888876 23343 22 2445666788899999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3.8e-17 Score=169.44 Aligned_cols=323 Identities=12% Similarity=0.036 Sum_probs=241.5
Q ss_pred ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-C-CCCchHHHHHHH
Q 047480 209 DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-G-MSKSTAAWSSMI 286 (719)
Q Consensus 209 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li 286 (719)
|...+..+...+...|+++.|...+..+.+. .|.+..++..+...|...|++++|...+++. . .+.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3456777788899999999999999999987 5677889999999999999999999999998 3 344678999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC
Q 047480 287 SGYTREGKIERARQLFDQMDQRDL------VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA 360 (719)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 360 (719)
..|.+.|++++|...|++..+.+. ..|..+...+. ...+......+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 999999999999999998865332 23333311100 0112223344455555
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHH
Q 047480 361 LDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFRE 439 (719)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 439 (719)
+++|...+.+.+ +.. +.+..++..+...|.+.|++++|...|+++... +.+...|..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555222 222 244556666777777788888888887776554 46677888888888888888888888888
Q ss_pred HHHcCCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHHHHcCCccC-h----hHHHHHHHHHHhcCCHH
Q 047480 440 MELMGLKPDGV-TFV------------TVLCACSHGGLVEEGKQFFESMLNYGIKPQ-M----EHYGCMVDLLARDGRLD 501 (719)
Q Consensus 440 m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~ 501 (719)
..+. .|+.. .+. .+...+...|++++|...++.+.+.. |+ . ..+..+...|.+.|+++
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHH
Confidence 8874 34432 222 23556888999999999999998533 33 2 33556788999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
+|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999887 3344 6778999999999999999999999999999999988888887776543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.8e-17 Score=169.68 Aligned_cols=287 Identities=12% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHH
Q 047480 54 CKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHC 133 (719)
Q Consensus 54 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 133 (719)
+ |++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+.
T Consensus 16 ~-~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 I-GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7 89999999999997775 8999999999999999999999652 677899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhH
Q 047480 134 HIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTF 213 (719)
Q Consensus 134 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 213 (719)
.+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 46688999999999999999999988864 67779999999999999999999999976 246
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 047480 214 VAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREG 293 (719)
Q Consensus 214 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g 293 (719)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA----------------------------------------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA----------------------------------------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH----------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHc----------------------------------------CCchhHHHHHHHHHHcC
Confidence 66666666666666655555443 14455555555555555
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 047480 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIE 373 (719)
Q Consensus 294 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 373 (719)
+++.|......+. .+......++..|.+.|++++|+.+++...... +.....|+-+.-++++- .+++..+-++.+..
T Consensus 192 ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 192 EFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS 268 (449)
T ss_dssp CHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 5555544444333 222223345555556666666666655554332 22223333333333222 12222222221222
Q ss_pred HcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 047480 374 NVVFGR------NIFLTTAVIDMYAKCGSIDTALSVFYKI 407 (719)
Q Consensus 374 ~~~~~~------~~~~~~~li~~y~k~g~~~~A~~~~~~~ 407 (719)
+.++++ +..+|..++-.|.+-++++.|....-.-
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 222222 4556777778888888888777655444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.6e-17 Score=166.82 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=218.9
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHH
Q 047480 274 GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVA 350 (719)
Q Consensus 274 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 350 (719)
+.+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3455666677777778888888888888887653 344566677778888888888888888887753 335566777
Q ss_pred HHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC
Q 047480 351 VLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 351 ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g 428 (719)
+...+...| +.++|.+.+. ...+.. +.+...+..+...|...|++++|...|++.... +.+...|..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLS-KATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHH-HHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHH-HHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 777788888 8888888887 444433 345667788888888888888888888876654 345667778888888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--------CccChhHHHHHHHHHHhcCCH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYG--------IKPQMEHYGCMVDLLARDGRL 500 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~ 500 (719)
++++|++.|++..+.. +.+..++..+...+...|++++|...++++.+.. .+.....+..+..+|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999888742 3345678888888888999999999988887421 123356888889999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCCh
Q 047480 501 DEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML-AETYRW 566 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 566 (719)
++|.+.+++. ...| +..+|..+...+...|+.++|...++++++++|+++..+..++.++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999988876 2233 5678888888899999999999999999999999988888888888 455553
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.9e-14 Score=163.40 Aligned_cols=483 Identities=12% Similarity=0.108 Sum_probs=332.1
Q ss_pred ChHHHHHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHh
Q 047480 20 SLKQALQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSM 99 (719)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 99 (719)
++.......+.-+..|...+.++|+|...|.- ..++++ +.+.+-+-=| ..++.-||...++..|.-.|++
T Consensus 854 rLkll~p~LE~~~~~g~~~~~~hnalakiyid--~n~npe---~fL~~n~~yd----~~~vgkyce~rDp~la~iay~~- 923 (1630)
T 1xi4_A 854 RLKLLLPWLEARIHEGCEEPATHNALAKIYID--SNNNPE---RFLRENPYYD----SRVVGKYCEKRDPHLACVAYER- 923 (1630)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc--cCCCHH---HHhhccCccc----HHHHHHHHHhcCcchHHHHhcc-
Confidence 44555555666677776668999999999997 413333 2222222111 1233444444444444444432
Q ss_pred HhCCCC-----------------------CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCChhHHHHHHHHH
Q 047480 100 LSKGIV-----------------------SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGL--EFDLFIRNALIHFY 154 (719)
Q Consensus 100 ~~~g~~-----------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y 154 (719)
|.- +-|...|..++.- +-+--+++.++.....+ ..++.--...+..|
T Consensus 924 ---g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 924 ---GQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred ---cCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 110 1233344444421 11223344455444433 23344446667888
Q ss_pred HhcCChhHHHHHHccCCCC------ChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH
Q 047480 155 SIFGYINNAHKVFEGSLAR------DLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRI 228 (719)
Q Consensus 155 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (719)
...|...+|.+++++..-. +...-|.++....+. +..+..++..+... ....-+-..|...|.+++
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHH
Confidence 8889999999988875522 234566677666666 45555555555432 113335666778889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 047480 229 GKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQR 308 (719)
Q Consensus 229 a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 308 (719)
|.++|+..... . .++-..+...+++++|.++.++. .++.+|..+..++.+.|++++|.+.|.+. .
T Consensus 1068 Af~IYkKa~~~-------~---~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA--d 1132 (1630)
T 1xi4_A 1068 AFAIFRKFDVN-------T---SAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--D 1132 (1630)
T ss_pred HHHHHHHcCCH-------H---HHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--C
Confidence 99988885321 1 11222233788899999888865 45788999999999999999999999764 6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 388 (719)
|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+.. .++...+..+.
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~--------~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh--------CCCHHHHHHHH
Confidence 77788889999999999999999998877654 333334458888899888885444332 35556667799
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
+.|...|++++|...|.... .|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|
T Consensus 1203 d~le~eg~YeeA~~~Y~kA~-------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNVS-------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhhh-------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999998764 5999999999999999999999876 3568888888999999998888
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChhHHHHHHHHHhc
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH--RNAKIGEIAGQKLLD 544 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~ 544 (719)
...... +..+...+..++..|.+.|.+++|+.+++.. ..+| ....|+-|...+.+. ++..++.+.|..-..
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 876653 3456677889999999999999999999776 4444 344666665555544 577788888887777
Q ss_pred cCC-----CCchhHHHHHHHHhhcCChHHHHH
Q 047480 545 LEP-----DHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 545 ~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
+.| .+...|.-+...|.+.|.|+.|..
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 766 667789999999999999999985
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=9.6e-16 Score=168.32 Aligned_cols=211 Identities=7% Similarity=-0.014 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHhcCCC-C-CCChhcHHHHHHHHHh
Q 047480 363 FGKRLHQQYIENVVFGRNIFLTTAVIDMYAK-------CGSID-------TALSVFYKIPK-N-LKTVSLFNSIISGLAQ 426 (719)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~~~~~~~-~-~~~~~~~~~li~~~~~ 426 (719)
.+..++++.+... +.+..+|..++..+.+ .|+++ +|..+|++... . +.+...|..++..+.+
T Consensus 256 ~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555666333332 3456666666666664 57766 77888877664 2 4567778888888888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHH-HHhcCCHHH
Q 047480 427 HGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDL-LARDGRLDE 502 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~g~~~e 502 (719)
.|++++|..+|+++.+ ..|+. ..|...+..+.+.|++++|+++|+...+. .|. ...|.....+ +...|+.++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 8888888888888777 35543 36777777777777888888888877753 222 2223222222 335778888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch----hHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA----HYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
|.++|++. ...| +...|..++......|+.++|..+++++++..|.++. .|...+......|+.+.+..+.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887765 2223 5667777777777778888888888888877665554 5666677777778888888777777
Q ss_pred HhC
Q 047480 577 DDS 579 (719)
Q Consensus 577 ~~~ 579 (719)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.7e-16 Score=161.06 Aligned_cols=267 Identities=12% Similarity=0.010 Sum_probs=229.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHH
Q 047480 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV 387 (719)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 387 (719)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+.++|...+.+.+. .. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVD-LY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hC-cCCHHHHHHH
Confidence 466677888899999999999999999998764 34556677788888999999999999994444 33 4567788899
Q ss_pred HHHHHhcC-ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 047480 388 IDMYAKCG-SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLV 465 (719)
Q Consensus 388 i~~y~k~g-~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (719)
...|...| ++++|...|++.... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 999999999987765 5677889999999999999999999999999853 23456777788899999999
Q ss_pred HHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCChhH
Q 047480 466 EEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-Y----------DANSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 466 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g~~~~ 534 (719)
++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++- . +.+..+|..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998643 3447889999999999999999999998761 0 3345789999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
|...+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987754
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=6.2e-17 Score=165.64 Aligned_cols=346 Identities=15% Similarity=0.106 Sum_probs=115.8
Q ss_pred hcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHH
Q 047480 156 IFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAV 235 (719)
Q Consensus 156 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 235 (719)
+.|++++|.++++++..++ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999997664 999999999999999999999965 36788999999999999999999998887
Q ss_pred HHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 047480 236 VYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTA 315 (719)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 315 (719)
+.+. .+++.+.+.|+.+|.++|+++++..+++ .|+..+|+.+.+.|...|++++|...|..+ ..|..
T Consensus 87 ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 87 ARKK----ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp --------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred HHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 7765 2335556666666666666666665554 244556666666666666666666666655 35666
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 395 (719)
++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|..
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~----------------------------- 198 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM----------------------------- 198 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH-----------------------------
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH-----------------------------
Confidence 666666666666666666665 145566666666666666665533
Q ss_pred ChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHH
Q 047480 396 SIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS--HGGLVEEGKQFFE 473 (719)
Q Consensus 396 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~ 473 (719)
....+.. ++.-...++..|.+.|++++|+.+++...... +-....|+.+.-+++ +.+++.+..+.|.
T Consensus 199 -------~~l~L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 199 -------CGLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp -------TTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred -------HHHHHHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2222221 11112234445555555555555555544321 111123333333333 2333333333332
Q ss_pred HHHHcCCcc------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 474 SMLNYGIKP------QMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 474 ~m~~~g~~p------~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
. +-+++| +..+|.-++-.|...++++.|...+-+-+ |+..--..+.....+-.+.|.-.++..--++..|
T Consensus 268 ~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 268 S--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp T--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred H--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 1 223333 35678888888889999998877666543 1211122222333444555544444333333333
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.....|..++...=+...+.+++++
T Consensus 344 ---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 344 ---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp ---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 2344444444333344444444433
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.5e-16 Score=165.88 Aligned_cols=280 Identities=10% Similarity=-0.027 Sum_probs=213.5
Q ss_pred HhcCCHHHHHH-HHhhcCC---C----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 290 TREGKIERARQ-LFDQMDQ---R----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 290 ~~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777777 7775443 1 34567778888888888888888888888763 34566777778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHH---------------HHHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNS---------------IISGLA 425 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~---------------li~~~~ 425 (719)
++|...+. .+.+.. +.+..++..+...|.+.|++++|.+.|+++... +.+...+.. .+..+.
T Consensus 115 ~~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALR-RCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHH-HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 88888888 444433 356777888888888888888888888876554 233333321 133344
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPD---GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 502 (719)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999985 444 6788999999999999999999999998643 3347889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------chhHHHHHHHHhhcCChHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-----------GAHYVLLSNMLAETYRWEEA 569 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 569 (719)
|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3334 57789999999999999999999999999998887 78899999999999999999
Q ss_pred HHHHHH
Q 047480 570 RQVRKL 575 (719)
Q Consensus 570 ~~~~~~ 575 (719)
..+++.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 988764
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2e-14 Score=157.71 Aligned_cols=409 Identities=11% Similarity=0.038 Sum_probs=269.0
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCC
Q 047480 132 HCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
++..++.. +.+...|..++. +.+.|++++|+.+|+++.. .+...|..++..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34445544 567889999998 4788999999999998654 36678999999999999999999999999875 47
Q ss_pred ChhhHHHHHHHH-hccCCcHHHHH----HHHHHHHhhCCCCCchHHHHHHHHHHHh---------cCChHHHHHHHHHcC
Q 047480 209 DAFTFVAMFSAC-TELNDPRIGKQ----FHAVVYKNLGCVGSNMLLKTAVINMYAK---------CGLMNMAERVFSTMG 274 (719)
Q Consensus 209 d~~t~~~ll~a~-~~~~~~~~a~~----i~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~a~~~~~~~~ 274 (719)
+...|...+... ...|+.+.+++ +++.+++..+..+++..+|...+....+ .|+.+.|..++++.-
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777666666433 34577776665 7777776543334567778888877665 678888888888872
Q ss_pred CCCc---hHHHHHHHHHH-------------HhcCCHHHHHHHHhh-------cC------CCC--------hhhHHHHH
Q 047480 275 MSKS---TAAWSSMISGY-------------TREGKIERARQLFDQ-------MD------QRD--------LVSWTAMI 317 (719)
Q Consensus 275 ~~~~---~~~~~~li~~y-------------~~~g~~~~A~~~f~~-------m~------~~~--------~~~~~~li 317 (719)
-.|+ ...|....... .+.++++.|..++.. +. .|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 2333 23444333321 123456666665554 11 111 23455554
Q ss_pred HHHHhc----CCh----hHHHHHHHHhHhcCCCCChhHHHHHHHHHHc-------cCChH-------HHHHHHHHHHHHc
Q 047480 318 SGYSQV----GGF----SQALELFGKMESLGIHPDEVTMVAVLRACVG-------LGALD-------FGKRLHQQYIENV 375 (719)
Q Consensus 318 ~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~ 375 (719)
.....+ ++. ++++.+|++..... +-+...|......+.. .|+++ .|..+++ ...+.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~-~Al~~ 315 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE-RAIST 315 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH-HHTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH-HHHHH
Confidence 333222 122 36677777777652 3355566666666654 67776 7777777 44432
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-Ch-hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 047480 376 VFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK-TV-SLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTF 452 (719)
Q Consensus 376 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 452 (719)
-.+.+..++..++..+.+.|++++|..+|+++....| +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHH
Confidence 2244577777888888888888888888877665423 32 46777777777788888888888887764 333 2233
Q ss_pred HHHHHH-HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHH
Q 047480 453 VTVLCA-CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PYDAN--SVIWRALLAA 525 (719)
Q Consensus 453 ~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--~~~~~~ll~~ 525 (719)
...... +...|++++|..+|+..++.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 222222 235778888888888777432 223677777888888888888888888775 22232 3477777777
Q ss_pred HHhcCChhHHHHHHHHHhccCCCC
Q 047480 526 CRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
...+|+.+.+..+.+++.+..|++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCchh
Confidence 777888888888888888877754
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.9e-14 Score=156.23 Aligned_cols=366 Identities=11% Similarity=-0.007 Sum_probs=254.6
Q ss_pred ChhHHHHHHHHHHh----cCChhHHHHHHccCCC-CChhhHHHHHHHHHc----CCCcchHHHHHHHHHHCCCCCChhhH
Q 047480 143 DLFIRNALIHFYSI----FGYINNAHKVFEGSLA-RDLVSYNTLINGYAQ----VKEPCPALWLFRKMQDSCIQPDAFTF 213 (719)
Q Consensus 143 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~ 213 (719)
++.....|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666666666666 6677777777765332 355566666666666 666666666666665543 33333
Q ss_pred HHHHHHHhc----cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHH
Q 047480 214 VAMFSACTE----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGY 289 (719)
Q Consensus 214 ~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y 289 (719)
..+-..+.. .++.+.|...+..+.+. .++..+..|...|
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------------~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------------------------------------GRDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------------------------CCHHHHHHHHHHH
Confidence 333334433 44555555555554443 2455566666666
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc---
Q 047480 290 TR----EGKIERARQLFDQMDQ-RDLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG--- 357 (719)
Q Consensus 290 ~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 357 (719)
.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 65 6677777777776543 455667777777776 777888888888777654 34555556666654
Q ss_pred -cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC-----
Q 047480 358 -LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK----CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH----- 427 (719)
Q Consensus 358 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~----- 427 (719)
.++.++|..++. ...+. .+......|..+|.. .++.++|...|++..+. .+...+..+...|...
T Consensus 235 ~~~~~~~A~~~~~-~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 235 VTQDYTQSRVLFS-QSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SCCCHHHHHHHHH-HHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCHHHHHHHHH-HHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCc
Confidence 677888888887 44443 244566667777777 78899999998887653 5666778888888877
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG---LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRL 500 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 500 (719)
++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.| +...+..|..+|.. .+++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 89999999999998865 4456666666676656 7899999999998754 56788888888988 8999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCC---CchhHHHHHHHHhh
Q 047480 501 DEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPD---HGAHYVLLSNMLAE 562 (719)
Q Consensus 501 ~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 562 (719)
++|.+.+++.....+...+..|...+.. .++.++|...++++.+..|+ ++.....++.++..
T Consensus 384 ~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 384 QQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999987434467788888888887 79999999999999998854 66677777766654
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=7e-13 Score=150.87 Aligned_cols=411 Identities=12% Similarity=0.100 Sum_probs=295.6
Q ss_pred HHHHHHhhccCCCCChHHHHHHhccCCC-C-----CccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHH
Q 047480 43 SQLISFFALSGCKNGLFRSRILFSQIDN-P-----NIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVL 116 (719)
Q Consensus 43 ~~l~~~y~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll 116 (719)
+..+.+|.. . |.+.+|..+++++.- | +...-|.++.+..+. +..+..+..++.- .+...-+.
T Consensus 989 s~~vKaf~~--a-glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA 1056 (1630)
T 1xi4_A 989 SVTVKAFMT--A-DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIA 1056 (1630)
T ss_pred HHHHHHHHh--C-CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHH
Confidence 455666666 6 777777777777642 2 223455566555555 4445544444432 22234466
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHH
Q 047480 117 NSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALW 196 (719)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 196 (719)
..|...|.+++|.++|+... ......+.++ -..+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 77778888999988888752 1122223332 26788999999988764 46789999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCC
Q 047480 197 LFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMS 276 (719)
Q Consensus 197 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~ 276 (719)
.|.+- -|...|.-+..+|.+.|+++++.+.+..+.+. . ++..+.+.++..|++.+++++...++. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--~--~e~~Idt~LafaYAKl~rleele~fI~----~ 1192 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A--RESYVETELIFALAKTNRLAELEEFIN----G 1192 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--c--ccccccHHHHHHHHhhcCHHHHHHHHh----C
Confidence 99663 46778888999999999999999999988876 2 343444469999999999987665543 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45667778999999999999999999985 48999999999999999999999877 35688999999999
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC--ChhHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG--LGETS 433 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g--~~~~A 433 (719)
..+++..|..... . +..+...+..++..|.+.|.+++|..+++..... +.....|+-+...|++.. +..++
T Consensus 1262 e~~Ef~LA~~cgl-~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGL-H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHH-h-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 9999888887654 1 3345566778999999999999999999887654 345567877777777653 44455
Q ss_pred HHHHHHHHHcCCCC------CHHHHHHHHHHHhccCcHHHHHHH-------------HHHHHHcCCccChhHHHHHHHHH
Q 047480 434 IAVFREMELMGLKP------DGVTFVTVLCACSHGGLVEEGKQF-------------FESMLNYGIKPQMEHYGCMVDLL 494 (719)
Q Consensus 434 ~~~~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~-------------~~~m~~~g~~p~~~~~~~li~~~ 494 (719)
+++|..-. .++| +...|.-+...|.+.|+++.|... |...+. -..+++.|...+.-|
T Consensus 1336 lk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1336 LELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHH
Confidence 55554322 1233 345688888889999999988722 222221 134577777777777
Q ss_pred HhcC---------------CHHHHHHHHHhC
Q 047480 495 ARDG---------------RLDEAYGLIQSM 510 (719)
Q Consensus 495 ~~~g---------------~~~eA~~~~~~~ 510 (719)
...+ +.+.+.++|.+.
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 7666 777777777755
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.7e-15 Score=161.11 Aligned_cols=376 Identities=11% Similarity=-0.025 Sum_probs=213.6
Q ss_pred ChhhHHHHHHHHHcCCCcchHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCC
Q 047480 174 DLVSYNTLINGYAQVKEPCPALWLFRKMQDS-----C--IQP-DAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGS 245 (719)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 245 (719)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+.......
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888888888888888776431 1 111 2234555555555555555555555554432100000
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-ChhhHHHHHHH-
Q 047480 246 NMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTRE--GKIERARQLFDQMDQ--R-DLVSWTAMISG- 319 (719)
Q Consensus 246 ~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~m~~--~-~~~~~~~li~~- 319 (719)
. .......+++.+..++.+. +++++|...|++..+ | +...+..+...
T Consensus 130 ~---------------------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 130 P---------------------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp S---------------------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred c---------------------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0 0011234455444444443 346777777766543 2 33344444333
Q ss_pred --HHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047480 320 --YSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAK 393 (719)
Q Consensus 320 --~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 393 (719)
+...++.++|++.+++..+.. +.+..++..+...+.. .++.++|.+.+. ...... +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~-~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVE-EALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHH-HHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHhC-ccHHHHHHHHHHHHHH
Confidence 334566677777777766542 2233444444434333 345667777776 333322 3455666777777777
Q ss_pred cCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhC-------------------CChhHHHHHHHHHHHcCCCCC-HHHH
Q 047480 394 CGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQH-------------------GLGETSIAVFREMELMGLKPD-GVTF 452 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~-~~t~ 452 (719)
.|++++|...|++..+. |.+..+|..+...|... +..++|+..|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 78887777777776544 34555666665554321 2356788888888764 344 4577
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCccCh--hHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 047480 453 VTVLCACSHGGLVEEGKQFFESMLNYGIKPQM--EHYGCMVD-LLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRL 528 (719)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~ 528 (719)
..+...+...|++++|...|++.++....|.. ..+..+.. .+...|++++|++.+++. .+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------ 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 88888999999999999999999865433322 12333333 345778999999999876 566765544333
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEE
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYI 590 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 590 (719)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 412 ---~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456678888999999999999999999999999999999999998776655566664
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.4e-16 Score=161.05 Aligned_cols=262 Identities=11% Similarity=-0.058 Sum_probs=183.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+. .+.+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ-RCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CCCHHHHHHHHH
Confidence 3345555666666666666666666665542 2344555556666666666666666666 333222 234556666666
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCC----------hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKT----------VSLFNSIISGLAQHGLGETSIAVFREMELMGLK-PDGVTFVTVLC 457 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 457 (719)
.|.+.|++++|...|+++... +.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 666677777776666665432 111 223445578889999999999999999985311 15678889999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
.+...|++++|...|+++.+.. +.+...|..+..+|.+.|++++|++.++++ ...| +..+|..+...+...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998643 345788999999999999999999999887 3344 577899999999999999999
Q ss_pred HHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 536 EIAGQKLLDLEPD------------HGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 536 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 356789999999999999998877654
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=9.5e-16 Score=159.77 Aligned_cols=241 Identities=10% Similarity=0.012 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChh-HHHHHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEV-TMVAVLR 353 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 353 (719)
+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.. .+.....
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence 444555556666666666666666665432 355567777777777777777777777777643 2221 1110000
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CC--ChhcHHHHHHHHHhCCCh
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LK--TVSLFNSIISGLAQHGLG 430 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~ 430 (719)
. . .... + ......+...+ ..|++++|...|+++... +. +...|..+...|...|++
T Consensus 175 ~-------~--------~~~~----~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 175 G-------A--------GGAG----L-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp -------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred H-------h--------hhhc----c-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH
Confidence 0 0 0000 0 00001112222 555666666666554433 12 355666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.++++
T Consensus 234 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 234 DKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666666531 2234466666666666666667766666666432 223556666666677777777776666654
Q ss_pred -CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 511 -PYDA------------NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 511 -~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
...| ...+|..+..++...|+.++|..++++.+
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 1111 14567777777777777777776665544
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.1e-13 Score=150.34 Aligned_cols=338 Identities=10% Similarity=0.000 Sum_probs=263.2
Q ss_pred cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCC
Q 047480 223 LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAK----CGLMNMAERVFSTMGMSKSTAAWSSMISGYTR----EGK 294 (719)
Q Consensus 223 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~----~g~ 294 (719)
.++.+.|...+..+.+. .+...+..|...|.. .++.++|...+++.--..++..+..|..+|.. .++
T Consensus 56 ~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 34444444444444433 123344445555555 55556666655555222366777788888888 789
Q ss_pred HHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHH
Q 047480 295 IERARQLFDQMDQ-RDLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGK 365 (719)
Q Consensus 295 ~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~ 365 (719)
+++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999988765 466778888888887 789999999999998865 56777777777777 89999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh----CCChhHHHHHH
Q 047480 366 RLHQQYIENVVFGRNIFLTTAVIDMYAK----CGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ----HGLGETSIAVF 437 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 437 (719)
..+. ...+.+ +......+..+|.. .++.++|...|++..+. .+...+..+...|.. .++.++|++.|
T Consensus 208 ~~~~-~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 208 QWYR-KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHH-HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHH-HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 9999 555543 56677888888987 88999999999987664 567778888888887 89999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC---CHHHHHHHHHh
Q 047480 438 REMELMGLKPDGVTFVTVLCACSHG-----GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG---RLDEAYGLIQS 509 (719)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~ 509 (719)
++..+.| +...+..+...+... +++++|..+|++..+.| +...+..|..+|.+.| ++++|.+.+++
T Consensus 283 ~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 283 RKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 9998764 455666677777776 89999999999999765 4567778888888767 78999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 047480 510 MPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 510 ~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 581 (719)
.-...+...+..|...+.. .++.++|...++++.+.. ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7434578889989888888 899999999999998864 57889999999998 8999999999999998764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.1e-15 Score=156.11 Aligned_cols=260 Identities=7% Similarity=-0.062 Sum_probs=175.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 313 WTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+. .+.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALN-HARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-cCCHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1233344444444444445555544444 222221 233444455555555
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHH--------------HH-HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSI--------------IS-GLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
..|++++|.+.|+++... +.+...+..+ .. .+...|++++|++.++++.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 555555555555554332 2222333332 22 3677889999999999998753 33567888889
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047480 457 CACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 534 (719)
..+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998643 334778999999999999999999999886 3334 57789999999999999999
Q ss_pred HHHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 535 GEIAGQKLLDLEPD------------HGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 535 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
|...++++++..|+ ++..+..++.+|...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 78899999999999999999999877543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2e-14 Score=144.01 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=184.5
Q ss_pred hcCCHHHHHHHHhhcCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHH
Q 047480 291 REGKIERARQLFDQMDQRDL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKR 366 (719)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 366 (719)
..|+++.|...++.....+. .....+..+|...|++++|+..++.. -+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34555555555554443221 12233445555555555555544321 23444555555555555556666666
Q ss_pred HHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 047480 367 LHQQYIENVV-FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL 445 (719)
Q Consensus 367 ~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 445 (719)
.++ .+...+ .+.+..++..+...|...|++++|.+.|++ . .+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 87 ~l~-~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 87 ELD-REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--G--DSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHH-HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--C--CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHH-HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 655 333322 233455556677888889999999999988 3 78889999999999999999999999999985
Q ss_pred CCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047480 446 KPDGVTF---VTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWR 520 (719)
Q Consensus 446 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 520 (719)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.++++ ...| +..+|.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4665322 12334445569999999999999964 3556889999999999999999999999986 4445 677899
Q ss_pred HHHHHHHhcCChhH-HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 047480 521 ALLAACRLHRNAKI-GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV 572 (719)
Q Consensus 521 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (719)
.++..+...|+.++ +..+++++++++|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999998865 678999999999998754 3456666666666543
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=3.7e-15 Score=155.23 Aligned_cols=260 Identities=12% Similarity=0.048 Sum_probs=131.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCh
Q 047480 252 AVINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGF 326 (719)
Q Consensus 252 ~li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 326 (719)
.+...+.+.|++++|...++++ ..+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccH
Confidence 3333344444444444444333 1234556677777777777777777777766543 3456677777777777777
Q ss_pred hHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047480 327 SQALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFY 405 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 405 (719)
++|+..|+++.+.. |+. ..+..+ .....++..+...|.+.|++++|...|+
T Consensus 150 ~~A~~~~~~al~~~--p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 150 QDACEALKNWIKQN--PKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHHHHHHHHHHC--HHHHCC---------------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 77777777776542 221 111111 0001122233444445555555555554
Q ss_pred cCCCC-CC--ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc
Q 047480 406 KIPKN-LK--TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482 (719)
Q Consensus 406 ~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 482 (719)
++... +. +..+|..+...|...|++++|++.|++..+.. +.+..++..+..++...|++++|...|+++.+.. +.
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 44332 12 34455555555555555555555555555431 2233455555555555666666666665555421 12
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-------------NSVIWRALLAACRLHRNAKIGEIAGQK 541 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (719)
+...+..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 2455555556666666666666555554 1011 245666666666666666666655544
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=178.03 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=116.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-----LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTF 452 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 452 (719)
.....+||+||++|+++|++++|.++|+.|.+. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 345678999999999999999999999775421 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 453 VTVLCACSHGGL-VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 453 ~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
+++|.++++.|. .++|.++|++|.+.|+.||..+|++++....|.+-++...++..++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 5789999999999999999999999998888876655555554333
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=5.6e-15 Score=148.02 Aligned_cols=249 Identities=11% Similarity=0.068 Sum_probs=203.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCCh--hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDE--VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
|.-....|++.+|+..+++.... .|+. .....+.+++...|+++.|...++ . .-+|+......+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~-~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK-P----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC-T----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc-c----cCChhHHHHHHHHHHHcCC
Confidence 34456789999999999876543 4443 345667889999999999987665 2 2356777888899999999
Q ss_pred CChHHHHHHHhcCCCC---CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN---LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
|+.++|.+.++++... +.+...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999986432 45677788888999999999999999987 45667888899999999999999999
Q ss_pred HHHHHHcCCccChhH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 472 FESMLNYGIKPQMEH---YGCMVDLLARDGRLDEAYGLIQSM--PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
|+.+.+.. |+... ...++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++++
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999643 55321 223445555669999999999998 234578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHH-HHHHHHHHHhCC
Q 047480 547 PDHGAHYVLLSNMLAETYRWEE-ARQVRKLMDDSG 580 (719)
Q Consensus 547 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 580 (719)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568988888654
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.1e-14 Score=157.46 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=143.4
Q ss_pred cCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHH
Q 047480 260 CGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTR----EGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQAL 330 (719)
Q Consensus 260 ~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (719)
.++.++|...+++. .+ +.+..++..+...+.. .|++++|.+.+++... .+...|..+...|...|++++|+
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH
Confidence 34444444444443 22 2334455555444443 4567778888876542 45667888888888999999999
Q ss_pred HHHHHhHhcCCCCC-hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 331 ELFGKMESLGIHPD-EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 331 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
..|++..+. .|+ ..++..+..++...+ ..... .. ...........+..+.|...|++...
T Consensus 268 ~~~~~al~~--~p~~~~~~~~lg~~y~~~~-----~~~~~-----~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 268 ELLKKALEY--IPNNAYLHCQIGCCYRAKV-----FQVMN-----LR-------ENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHH-----HHHHH-----C-------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHHHH-----HHhhh-----HH-------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999888775 343 344444443332110 00000 00 00011111122335677777776544
Q ss_pred C-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHcCCccChh
Q 047480 410 N-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV--TFVTVLC-ACSHGGLVEEGKQFFESMLNYGIKPQME 485 (719)
Q Consensus 410 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 485 (719)
. +.+..+|..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|...|++.++ +.|+..
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~ 406 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSR 406 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCH
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccH
Confidence 3 4667789999999999999999999999998854333221 2222222 34578999999999999987 456543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
...... +.+.+++++. ...| +..+|..+...+...|+.++|+..+++++++.|.+|.+...++
T Consensus 407 ~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332222 2333333332 2233 6678999999999999999999999999999999887766554
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=4.2e-14 Score=144.39 Aligned_cols=266 Identities=12% Similarity=0.038 Sum_probs=130.9
Q ss_pred HHHHHHhcCChHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 047480 253 VINMYAKCGLMNMAERVFSTM--GMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFS 327 (719)
Q Consensus 253 li~~y~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (719)
+...+...|++++|...++++ ..+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|+++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence 333444444444444444443 1233455666666666666666666666665542 34556666666677777777
Q ss_pred HHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHH-HH-HHHhcCChHHHHHHH
Q 047480 328 QALELFGKMESLGIHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAV-ID-MYAKCGSIDTALSVF 404 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~-~y~k~g~~~~A~~~~ 404 (719)
+|++.|+++.... |+. ..+..+...+ ++......+ .. .+...|++++|...|
T Consensus 107 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 107 AALASLRAWLLSQ--PQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHHHHHHHHHTS--TTTTTC-------------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 7777777766542 222 1111110000 000000001 11 134445555555555
Q ss_pred hcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC
Q 047480 405 YKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483 (719)
Q Consensus 405 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 483 (719)
+++... +.+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 239 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY 239 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 544332 2344455555555555555555555555555431 2223455555555555566666666665555322 123
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-------------NSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|...++++++.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445555555666666666666555554 1112 2345555555666666666666665555443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=168.53 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=117.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhH
Q 047480 275 MSKSTAAWSSMISGYTREGKIERARQLFDQMD-------QRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVT 347 (719)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 347 (719)
...-..+||+||++|+++|++++|.++|+.|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34455688899999999999999999987653 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCh-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCChhcHHHHHHH
Q 047480 348 MVAVLRACVGLGAL-DFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKTVSLFNSIISG 423 (719)
Q Consensus 348 ~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~ 423 (719)
|+++|.++++.|.. +.|.++++ .|.+.|+.||..+|++++..+.+.+-++...+++..+... ++.+.+-+.|.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~-EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLE-QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHH-HHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHH-HHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999998888874 67888888 7888888999999998888777766666555555444432 1223344555566
Q ss_pred HHhCC
Q 047480 424 LAQHG 428 (719)
Q Consensus 424 ~~~~g 428 (719)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66555
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=4.9e-14 Score=134.71 Aligned_cols=195 Identities=15% Similarity=0.034 Sum_probs=159.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 047480 378 GRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTV 455 (719)
Q Consensus 378 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 455 (719)
+++...+..+...+.+.|++++|...|++.... |.+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 456677788888999999999999999987665 677889999999999999999999999999985 565 4588888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 047480 456 LCACSHG-----------GLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRAL 522 (719)
Q Consensus 456 l~a~~~~-----------g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l 522 (719)
...+... |++++|...|++.++. .|+ ...+..+..+|...|++++|++.+++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8889999 9999999999999964 454 778889999999999999999999986 212678899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.5e-13 Score=133.34 Aligned_cols=228 Identities=11% Similarity=-0.005 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+.+.+....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------- 69 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR-------------- 69 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc--------------
Confidence 356666667777777777777777766654 4555555555555556666665555552111100
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGK 469 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (719)
..... +.....|..+...|...|++++|++.|++..+. .|+. ..+...|++++|.
T Consensus 70 ---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 70 ---------------EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp ---------------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred ---------------ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 00000 001467788888888888888898888888874 4553 2355667889999
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
..++.+.... +.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++..|
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 9999888642 233677888899999999999999999887 223 3677888888899999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+++..+..++.+|...|++++|.+.+++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.5e-13 Score=130.85 Aligned_cols=235 Identities=11% Similarity=0.015 Sum_probs=152.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC--CCC----hhHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--RDLVSWTAMISGYSQVGGFSQALELFGKMESLGI--HPD----EVTMV 349 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~ 349 (719)
....+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788999999999999999999987643 6778899999999999999999999999876421 112 34455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCC
Q 047480 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGL 429 (719)
Q Consensus 350 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (719)
.+...+...|++++|...+. +.....++ ...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~------------------------------------~a~~~~~~-------~~~~~~~~~ 120 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQ------------------------------------KSLTEHRT-------ADILTKLRN 120 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------------------------HHHHHCCC-------HHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHH------------------------------------HHHhcCch-------hHHHHHHhH
Confidence 55555555555555555555 33221122 122344455
Q ss_pred hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
+++|+..++++... .|+. ..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++
T Consensus 121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55666666655552 3332 355555556666666666666666666432 2235566666667777777777777666
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCchhHHHHHH
Q 047480 509 SM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLE------PDHGAHYVLLSN 558 (719)
Q Consensus 509 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 558 (719)
++ ...| +...|..+...+...|+.++|...+++++++. |++...+..+..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 65 2223 45667777777777778888888888877777 666555554443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=5.7e-13 Score=132.23 Aligned_cols=243 Identities=7% Similarity=-0.108 Sum_probs=183.2
Q ss_pred hcCChhHHHHHHHHhHhcCC--CC-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 047480 322 QVGGFSQALELFGKMESLGI--HP-DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID 398 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 398 (719)
..|++++|+..|+++.+... .| +..++..+...+...|++++|...+. ...+.. +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS-QALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHH-HHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34667788888887776531 11 34566677777778888888888887 333332 345677888888888999999
Q ss_pred HHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 399 TALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 399 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
+|...|++.... +.+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999988887654 457788999999999999999999999999884 56666555555666777999999999988885
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 478 YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-YDAN-----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 478 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
.. +++...+ .++..+...++.++|.+.+++.- ..|+ ..+|..+...+...|+.++|...++++++++|++..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 32 3344444 47778888889999999998863 2332 467888888999999999999999999999998754
Q ss_pred hHHHHHHHHhhcCChHHHHHHH
Q 047480 552 HYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788889999987765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=6e-13 Score=131.97 Aligned_cols=245 Identities=10% Similarity=0.004 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCC--hhHHHHHHHHH
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPD--EVTMVAVLRAC 355 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 355 (719)
.+......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..-.|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455566666777777776666542 2344666666666666777777766666665321111 11245555555
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHH-HHHHhCCChhHH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSII-SGLAQHGLGETS 433 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A 433 (719)
...|++++|...+. ...+.. +.+..++..+...|.+.|++++|...|++.... +.+...|..+. ..|. .+++++|
T Consensus 85 ~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQ-AAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHH-HHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHcccHHHHHHHHH-HHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 66666666666665 222222 223345555555555555555555555554443 33344444444 2222 2344555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCC---HHHHHHHHHhC
Q 047480 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGR---LDEAYGLIQSM 510 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~ 510 (719)
++.|++..+. .|+ +...+..+..++...|+ +++|...++++
T Consensus 162 ~~~~~~a~~~--~p~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 162 DSSFVKVLEL--KPN----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHH--STT----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHh--Ccc----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 5555444442 222 13334444444444444 43344443333
Q ss_pred ----CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 511 ----PYDAN------SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 511 ----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 1356667777888899999999999999999999877777666554443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1.6e-12 Score=127.25 Aligned_cols=199 Identities=7% Similarity=-0.106 Sum_probs=161.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC 459 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 459 (719)
...+..+...|...|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 455667777888888888888888876543 4567788888888999999999999999888752 23556778888888
Q ss_pred hccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
...|++++|.++++++.+.+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999988876333453 667788888899999999999988876 2233 5677888888889999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..++++++..|+++..+..++.+|...|++++|.++++.+.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999888889999999999999999999999887654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=2.7e-12 Score=122.91 Aligned_cols=199 Identities=10% Similarity=-0.046 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
+..++..+...|...|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455566677777777777777777765543 3456677777777888888888888888777642 2345567777777
Q ss_pred Hhcc-CcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 047480 459 CSHG-GLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKI 534 (719)
Q Consensus 459 ~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 534 (719)
+... |++++|...++.+.+.+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 7778 888888888887776322333 566777777888888888888887765 2233 46677777777888888888
Q ss_pred HHHHHHHHhccCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 535 GEIAGQKLLDLEP-DHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 535 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 77777777777888888888888888877654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=3.3e-12 Score=132.32 Aligned_cols=245 Identities=9% Similarity=0.004 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCC-hHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGA-LDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
..|+.+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|...+. .+.+.. +.+..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~-~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYIT-AIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHH-HHHHHC-CCCHHHHHHHHH
Confidence 346666666677777777777777776642 2244556666666777775 777777777 333333 345667777888
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc-cCcHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSH-GGLVE 466 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 466 (719)
+|.+.|++++|...|+++... +.+...|..+..++...|++++|++.|+++++. .|+ ...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888877654 577888999999999999999999999999885 454 4678888888888 56656
Q ss_pred HH-----HHHHHHHHHcCCccC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 047480 467 EG-----KQFFESMLNYGIKPQ-MEHYGCMVDLLARDG--RLDEAYGLIQSMPYDA-NSVIWRALLAACRLHR------- 530 (719)
Q Consensus 467 ~a-----~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 530 (719)
+| ++.|++.+.. .|+ ...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 5788888763 454 678888888898888 6899999988875555 4567788888877764
Q ss_pred -C-hhHHHHHHHHH-hccCCCCchhHHHHHHHHhh
Q 047480 531 -N-AKIGEIAGQKL-LDLEPDHGAHYVLLSNMLAE 562 (719)
Q Consensus 531 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 562 (719)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999988888888776654
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=5.3e-12 Score=134.93 Aligned_cols=371 Identities=10% Similarity=-0.011 Sum_probs=183.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCCChhhHHHHHHHHHcCC--
Q 047480 115 VLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYI---NNAHKVFEGSLARDLVSYNTLINGYAQVK-- 189 (719)
Q Consensus 115 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 189 (719)
+...+.+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777665 222334455555566666 77888887766556666776766555544
Q ss_pred ---CcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcH---HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCCh
Q 047480 190 ---EPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPR---IGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM 263 (719)
Q Consensus 190 ---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 263 (719)
++++|+..|++..+.|... .+..+-..+...+..+ .+.+.+......
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------------------------ 138 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------------------------ 138 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------------------------
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------------------------
Confidence 5677888888777755322 3333333333322221 122222222222
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHHHHHHHHhhcCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHh
Q 047480 264 NMAERVFSTMGMSKSTAAWSSMISGYTREG----KIERARQLFDQMDQRDLVSWTAMISGYSQVG---GFSQALELFGKM 336 (719)
Q Consensus 264 ~~a~~~~~~~~~~~~~~~~~~li~~y~~~g----~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m 336 (719)
.++.....|...|...+ +.+.+..++......+...+..+...|...| +.++|++.|++.
T Consensus 139 -------------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 139 -------------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 22445555666666655 4455666666666666668888888888888 788888888888
Q ss_pred HhcCCCCChhHHHHHHHHHHcc----CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 047480 337 ESLGIHPDEVTMVAVLRACVGL----GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLK 412 (719)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 412 (719)
.+.| .++...+..+...|... ++.++|...+. +.. +.
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~------------------------------------~aa--~g 246 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE------------------------------------KIA--PG 246 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH------------------------------------HHG--GG
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH------------------------------------HHc--CC
Confidence 7776 33444333444444332 45555555555 333 13
Q ss_pred ChhcHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCCccCh
Q 047480 413 TVSLFNSIISG-L--AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG-----LVEEGKQFFESMLNYGIKPQM 484 (719)
Q Consensus 413 ~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~g~~p~~ 484 (719)
++..+..+... | ...++.++|++.|++..+.| +...+..|...|. .| ++++|.++|++.. . -+.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~ 318 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REV 318 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCH
Confidence 44444444443 2 23455666666666655544 3344444444444 33 6666666666554 2 234
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 485 EHYGCMVDLLAR----DGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 485 ~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
..+..|..+|.. ..++++|.+.|++.....+......|...|.. ..|.++|...++++.+..+.. +...+
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l 396 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLA 396 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHH
Confidence 445555555544 23666666666665322233344444444432 346777777777776655433 22333
Q ss_pred HHHH--hhcCChHHHHHHHHHHH
Q 047480 557 SNML--AETYRWEEARQVRKLMD 577 (719)
Q Consensus 557 ~~~~--~~~g~~~~A~~~~~~m~ 577 (719)
..+. ...++.++|..+.++-.
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH
Confidence 3332 22335555666655544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.2e-12 Score=127.10 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
....+..+...+...|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455666777788888888888888877654 4567788888888889999999999999888752 3355677888888
Q ss_pred HhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 888999999999999888543 345677888888899999999999988876 222 35677888888888899999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999888889999999999999999999999887653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=1.2e-11 Score=121.06 Aligned_cols=207 Identities=15% Similarity=0.054 Sum_probs=139.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~-------------------- 95 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYR-------------------- 95 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHH--------------------
Confidence 4567777777778888888888887776642 2234444444444444555555554444
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 467 (719)
++... +.+...|..+...|...|++++|+++|+++.+.+..|+. ..+..+...+...|++++
T Consensus 96 ----------------~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 96 ----------------KALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp ----------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------HHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 43322 245556666777777777777777777777663334543 466666777777788888
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++.
T Consensus 160 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 160 AKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888887777533 234667777888888888888888888776 3333 5566777777788889999999999999999
Q ss_pred CCCCchhHH
Q 047480 546 EPDHGAHYV 554 (719)
Q Consensus 546 ~p~~~~~~~ 554 (719)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 998765543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=2.8e-11 Score=120.03 Aligned_cols=224 Identities=12% Similarity=-0.039 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHH
Q 047480 309 DLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVG----LGALDFGKRLHQQYIENVVFGRNIFLT 384 (719)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (719)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~--------------- 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYA--------------- 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH---------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHH---------------
Confidence 44556666666777777777777777666522 33344444444554 555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ----HGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 460 (719)
+..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+.
T Consensus 67 ---------------------~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 67 ---------------------KACDL-NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp ---------------------HHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ---------------------HHHHC-CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 33321 234444445555555 555555555555555543 4445555555555
Q ss_pred c----cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 047480 461 H----GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRLDEAYGLIQSMPYDANSVIWRALLAACRL---- 528 (719)
Q Consensus 461 ~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~---- 528 (719)
. .+++++|..+|++..+.+ +...+..+..+|.+ .+++++|.+.+++.-...+...+..+...+..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 5 556666666666555433 33444555555555 56666666666554212244555555555555
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 580 (719)
.++.++|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666666666666654 4556666666666 666666666666666544
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=4.3e-12 Score=135.64 Aligned_cols=345 Identities=11% Similarity=-0.014 Sum_probs=176.5
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCCh---HHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 047480 216 MFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLM---NMAERVFSTMGMSKSTAAWSSMISGYTRE 292 (719)
Q Consensus 216 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~a~~~~~~~~~~~~~~~~~~li~~y~~~ 292 (719)
+...+.+.|++++|.+++..+.+. + +...+..|..+|...|+. ++|...+++.--. ++..+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC-----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhC
Confidence 344556677777777777777666 3 223334455555556666 6677776665212 555555555544444
Q ss_pred C-----CHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChh---HHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHH
Q 047480 293 G-----KIERARQLFDQMDQ-RDLVSWTAMISGYSQVGGFS---QALELFGKMESLGIHPDEVTMVAVLRACVGLGALDF 363 (719)
Q Consensus 293 g-----~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 363 (719)
| +.++|...|++..+ .+...+..+...|...+..+ ++.+.+.+....| +......+...+...+.++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 3 56667766666543 23445666666666554433 3344444444333 23334444455555553333
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhC----CChhHHHH
Q 047480 364 GKRLHQQYIENVVFGRNIFLTTAVIDMYAKCG---SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQH----GLGETSIA 435 (719)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~----g~~~~A~~ 435 (719)
+..... ...+.-...++..+..|..+|.+.| +.++|.+.|++..+. +++...+..+...|... +++++|++
T Consensus 160 ~~~~a~-~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVE-RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHH-HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 333322 1111111233336666666777777 667777777665443 33444445555555443 56677777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC-----CHHHHHHHH
Q 047480 436 VFREMELMGLKPDGVTFVTVLCA-C--SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG-----RLDEAYGLI 507 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~eA~~~~ 507 (719)
.|++.. .| +...+..+... + ...+++++|.++|++..+.| +...+..|..+|. .| ++++|.+.|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 777665 22 23334444433 2 34667777777777766554 4455555666665 44 677777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhC
Q 047480 508 QSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE----TYRWEEARQVRKLMDDS 579 (719)
Q Consensus 508 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 579 (719)
++.. ..+...+..|...|.. ..+.++|...++++.+. .++.+...|+.+|.. ..+.++|...++...+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 7766 4455555555554444 23667777777776653 345566677777653 34667777777776665
Q ss_pred CC
Q 047480 580 GI 581 (719)
Q Consensus 580 ~~ 581 (719)
|.
T Consensus 388 g~ 389 (452)
T 3e4b_A 388 DT 389 (452)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=5.5e-12 Score=120.35 Aligned_cols=194 Identities=14% Similarity=0.065 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 353 (719)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P---------- 70 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TP---------- 70 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----------
Confidence 4444555555555555555555555554432 23344555555555555555555555555443 12
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHhcCCCC-CCChhcHHHHH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC-----------GSIDTALSVFYKIPKN-LKTVSLFNSII 421 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~~~-~~~~~~~~~li 421 (719)
.+...+..+...|.+. |++++|...|++..+. |.+...|..+.
T Consensus 71 -------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg 125 (217)
T 2pl2_A 71 -------------------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125 (217)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2223333333333333 6666776666665443 34566677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHH
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 501 (719)
..|...|++++|+..|++..+.. .+...+..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|+++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHH
Confidence 77777777777777777777655 556666777777777777777777777776532 223566666777777777777
Q ss_pred HHHHHHHhC
Q 047480 502 EAYGLIQSM 510 (719)
Q Consensus 502 eA~~~~~~~ 510 (719)
+|++.+++.
T Consensus 203 ~A~~~~~~~ 211 (217)
T 2pl2_A 203 EAARAAALE 211 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777776654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.2e-12 Score=125.26 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=139.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+...|++++|+..|+++.+.. +.+... +..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~------------------------------------~~~la~ 65 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIP------------------------------------YINFAN 65 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHH------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHH------------------------------------HHHHHH
Confidence 3455566666666666666666666666532 223333 344444
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEG 468 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (719)
.|.+.|++++|...|+++... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 555555555555555544332 2456677777888888888888888888887753 33456777778888888888888
Q ss_pred HHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 469 KQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 469 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
..+++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|+.++|...+++++++.
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888887542 335778888889999999999999998876 223 357788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhc
Q 047480 547 PDHGAHYVLLSNMLAET 563 (719)
Q Consensus 547 p~~~~~~~~l~~~~~~~ 563 (719)
|+++..+..+..+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 99988877776655433
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=3.8e-11 Score=119.04 Aligned_cols=227 Identities=10% Similarity=-0.046 Sum_probs=164.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHhHhcCCCCChhHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQR-DLVSWTAMISGYSQ----VGGFSQALELFGKMESLGIHPDEVTMVAV 351 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 351 (719)
.++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46778889999999999999999999987654 56678889999999 999999999999998765 45555555
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHh-
Q 047480 352 LRACVG----LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQ- 426 (719)
Q Consensus 352 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~- 426 (719)
...+.. .++.++|...+. ...+. .+..++..+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~-~a~~~------------------------------------~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYS-KACDL------------------------------------KYAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHH-HHHHT------------------------------------TCHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCcccCHHHHHHHHH-HHHHc------------------------------------CCccHHHHHHHHHHcC
Confidence 555555 566666666655 22222 244455555566666
Q ss_pred ---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh---
Q 047480 427 ---HGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH----GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR--- 496 (719)
Q Consensus 427 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 496 (719)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+..+|.+
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS
T ss_pred CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 677777777777777654 44455556666665 777888888887777643 35666677777877
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCC
Q 047480 497 -DGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 497 -~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.+++++|++.+++.-...+...+..+...+.. .++.++|...++++.++.|++
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88888888888776222236667777777777 888999999999998888864
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=1.3e-11 Score=118.04 Aligned_cols=209 Identities=12% Similarity=-0.013 Sum_probs=143.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVID 389 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 389 (719)
...|..+...+...|++++|++.|+++.+.. + .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~------------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-P------------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-c------------------------------------cchHHHHHHHH
Confidence 3445555666666666666666666655432 1 22334444555
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (719)
.|...|++++|...|+++... +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 555556666666655554332 34566777788888888 888888888888877333454 356777777888888888
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYD--ANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
+|...++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+.
T Consensus 131 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888888887532 234677888888888999999998888876 222 356667666667888899999999999999
Q ss_pred ccCCCCchhHHHH
Q 047480 544 DLEPDHGAHYVLL 556 (719)
Q Consensus 544 ~~~p~~~~~~~~l 556 (719)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8999887665544
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=6.3e-12 Score=124.65 Aligned_cols=152 Identities=9% Similarity=-0.099 Sum_probs=104.8
Q ss_pred cCCCchHHHHHHHHhHhCCCC--CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 047480 85 RSDSPQEALVLYTSMLSKGIV--SPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINN 162 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 162 (719)
..|++++|++.|+++.+.... |.+..++..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456777778877777765321 0134466667777777778888888777777765 4456777777777888888888
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 047480 163 AHKVFEGSL---ARDLVSYNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKN 239 (719)
Q Consensus 163 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 239 (719)
|.+.|++.. ..+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+.+.|...+..+...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 887777643 235677888888888888888888888888763 455544444444555567777777777666665
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=3.3e-11 Score=119.28 Aligned_cols=227 Identities=8% Similarity=-0.070 Sum_probs=177.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh----hHHHHHH
Q 047480 247 MLLKTAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKIERARQLFDQMDQ--RDLV----SWTAMIS 318 (719)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~----~~~~li~ 318 (719)
..........+...|++++|...+++. .. +.+..++..+...|...|++++|...|++..+ ++.. +|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344566788899999999999999998 33 34556899999999999999999999998765 2222 3889999
Q ss_pred HHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCh
Q 047480 319 GYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVI-DMYAKCGSI 397 (719)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~y~k~g~~ 397 (719)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+. ...+. .+.+..++..+. ..|. .+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~-~~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-KQIRP-TTTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-GGCCS-SCCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-HHhhc-CCCcHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999863 3356788899999999999999999998 44443 245667777777 5554 5599
Q ss_pred HHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC---hhHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCcHH
Q 047480 398 DTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL---GETSIAVFREMELMG-LKPDG------VTFVTVLCACSHGGLVE 466 (719)
Q Consensus 398 ~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 466 (719)
++|.+.|+++.+. +.+...|..+...+...|+ .++|...|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987765 4567788888888888888 888999998887631 12331 35666667777778888
Q ss_pred HHHHHHHHHHH
Q 047480 467 EGKQFFESMLN 477 (719)
Q Consensus 467 ~a~~~~~~m~~ 477 (719)
+|.+.|+++.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888877775
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=8.9e-12 Score=129.07 Aligned_cols=228 Identities=7% Similarity=-0.030 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHhcCCCC-CCChhcHHHHHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGS-IDTALSVFYKIPKN-LKTVSLFNSIISG 423 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~-~~~A~~~~~~~~~~-~~~~~~~~~li~~ 423 (719)
..+..+..++...|++++|...+. .+.+.. +.+..+++.+...|.+.|+ +++|...|+++... +.+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~-~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTR-DAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHH-HHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 456677778888999999999999 555444 4667889999999999997 99999999998765 6788899999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh-cCCHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR-DGRLD 501 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~ 501 (719)
+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+++++.. +-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999985 554 5689999999999999999999999999743 2347889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC--------
Q 047480 502 EA-----YGLIQSM-PYDA-NSVIWRALLAACRLHR--NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY-------- 564 (719)
Q Consensus 502 eA-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 564 (719)
+| ++.+++. ...| +...|..+...+...| +.++|+..++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 4455 5678999888888888 689999999998 999999999999999999875
Q ss_pred -ChHHHHHHHHHH-HhC
Q 047480 565 -RWEEARQVRKLM-DDS 579 (719)
Q Consensus 565 -~~~~A~~~~~~m-~~~ 579 (719)
.+++|.++++.+ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 543
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=2e-11 Score=112.97 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=135.0
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 490 (719)
.+...|..+...|.+.|++++|++.|++..+. .|+. .++..+...+.+.|++++|...+....... +.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 45667888888888888888888888888874 4544 577888888888888888888888887532 2346677777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 491 VDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888889999998888876 2333 567788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 047480 569 ARQVRKLMDDSG 580 (719)
Q Consensus 569 A~~~~~~m~~~~ 580 (719)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999887643
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.8e-09 Score=119.42 Aligned_cols=436 Identities=9% Similarity=0.031 Sum_probs=282.4
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hhH
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGY---INN 162 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~ 162 (719)
.....+.+..|++.+..+ |-|..+|..++..+.+.+.++.++.+++.++.. ++.....|..-+..-.+.|. ++.
T Consensus 45 ~~~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp -CCCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred ccCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 344666777777777777 357789999999998889999999999999887 46777888888888888888 999
Q ss_pred HHHHHccCCC-----CChhhHHHHHHHHHcCCCc----ch----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc----
Q 047480 163 AHKVFEGSLA-----RDLVSYNTLINGYAQVKEP----CP----ALWLFRKMQD-SCI-QPDA-FTFVAMFSACTE---- 222 (719)
Q Consensus 163 A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~pd~-~t~~~ll~a~~~---- 222 (719)
+..+|++... +++..|...+.-..+.++. ++ ..++|+..+. .|. .|+. ..|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999987332 6777888887766555543 22 3467766543 466 5543 455555554332
Q ss_pred -----cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 047480 223 -----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIER 297 (719)
Q Consensus 223 -----~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 297 (719)
.+..+.++.+|..++.. +...-..+|......-...+. ..+.+++.+ ...+++.
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e------------------~~~~y~~ 260 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE------------------LSAQYMN 260 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH------------------HHHHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH------------------hhHHHHH
Confidence 22355667777776643 222222333222221111111 001111111 0112223
Q ss_pred HHHHHhh-------cCC--------------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHhHhcCC
Q 047480 298 ARQLFDQ-------MDQ--------------R--D------LVSWTAMISGYSQVG-------GFSQALELFGKMESLGI 341 (719)
Q Consensus 298 A~~~f~~-------m~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~ 341 (719)
|...+.. +.+ | + ...|...+.---.++ ..+.+..+|++.... .
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 3333322 110 0 0 124555554433332 123456678887765 2
Q ss_pred CCChhHHHHHHHHHHccCChHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------
Q 047480 342 HPDEVTMVAVLRACVGLGALDFGK-RLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN---------- 410 (719)
Q Consensus 342 ~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------- 410 (719)
+-+...|...+.-+...|+.+.|. .+++ ..... .+.+..++-..+....+.|+++.|.++|+++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~-rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLK-LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHH-HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 446677777777777888888886 9998 44443 3456777888888999999999999999887542
Q ss_pred -CC------------ChhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHH
Q 047480 411 -LK------------TVSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVTVLCACSH-GGLVEEGKQFFESM 475 (719)
Q Consensus 411 -~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m 475 (719)
.| ....|...+....+.|+.+.|..+|.+.++. + .+....|......-.+ .++++.|..+|+..
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 02 1236888888888889999999999999875 2 1122333322222223 35689999999999
Q ss_pred HHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 476 LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-YDA----NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 476 ~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
++. ++-+...+...++.....|+.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 497 Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 497 LKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 854 33456677788898889999999999999862 223 346899999988999999999999999999999875
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=3.3e-12 Score=137.41 Aligned_cols=195 Identities=8% Similarity=-0.081 Sum_probs=163.1
Q ss_pred CChhHHHHHHHHHHhcCCh-HHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSI-DTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
.+...+..+...|...|++ ++|.+.|++..+. +.+...|..+...|...|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4556666677777777777 7777777765543 456778999999999999999999999998874 67877888888
Q ss_pred HHHhcc---------CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 047480 457 CACSHG---------GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD--------GRLDEAYGLIQSM-PYDA---- 514 (719)
Q Consensus 457 ~a~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~eA~~~~~~~-~~~p---- 514 (719)
..+... |++++|.+.|+++++.. +.+...|..+..+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 889998 99999999999998643 23477888999999988 9999999999887 3345
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+..+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999998765443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=5.2e-12 Score=133.08 Aligned_cols=154 Identities=10% Similarity=-0.038 Sum_probs=113.4
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccC-
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD----GVTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQ- 483 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~- 483 (719)
..+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..++++..+. +-.+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 34678888888889999999998888765310 122 136777888888999999999999887732 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP------DH 549 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~ 549 (719)
...+..+...|.+.|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++.+ ..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 346 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcch
Confidence 5577888899999999999999888761 1122 45677778888999999999999999987633 23
Q ss_pred chhHHHHHHHHhhcCChH
Q 047480 550 GAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~ 567 (719)
..++..++.+|...|+..
T Consensus 347 ~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 347 LTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHhhHhH
Confidence 456778888888888664
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=5.1e-12 Score=133.63 Aligned_cols=267 Identities=10% Similarity=0.001 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHH
Q 047480 281 AWSSMISGYTREGKIERARQLFDQMDQ--R-DL----VSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLR 353 (719)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 353 (719)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 344455566666666666666665543 2 21 245556666666666666666666654320
Q ss_pred HHHccCChHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CCChhcHHHHHHHHH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVV-FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------LKTVSLFNSIISGLA 425 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~ 425 (719)
.+.+ .+....++..+...|...|++++|...|++.... +....+|..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0000 0111223344444555555555555554443221 112335666666777
Q ss_pred hCCC-----------------hhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-cc
Q 047480 426 QHGL-----------------GETSIAVFREMELM----GLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KP 482 (719)
Q Consensus 426 ~~g~-----------------~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p 482 (719)
..|+ +++|++.+++..+. +-.|.. .++..+...+...|++++|..++++..+..- .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777665432 111222 3666777778888888888888887763210 11
Q ss_pred C----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-
Q 047480 483 Q----MEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH- 549 (719)
Q Consensus 483 ~----~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 549 (719)
+ ...+..+...|...|++++|.+.+++.- ...+ ..++..+...+...|++++|...+++++++.++.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 2367778888888888888888887651 1111 4567777777888899999999998888764432
Q ss_pred -----chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 550 -----GAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 550 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..++..++.+|...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 347888999999999999999999988753
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=2.4e-09 Score=118.33 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=99.1
Q ss_pred HHHHHHHHHhCCChhchHHHHHHHhhccCCCCChHHHHHHhccCCC--C-CccHHHHHHHHHHcCCC---chHHHHHHHH
Q 047480 25 LQIHGQIVHSGLNHHISSSQLISFFALSGCKNGLFRSRILFSQIDN--P-NIFIWNTLMRGYSRSDS---PQEALVLYTS 98 (719)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~ 98 (719)
...+...+...+...-.|..++....+ . +.++.|+.+|+.+.. | ....|...+..-.+.++ ++.+..+|++
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~--~-~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVS--L-KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHh--c-CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334555556655556789999999888 7 899999999988753 3 45568888888888888 9999999999
Q ss_pred hHhCCCCCCCcccHHHHHHHHhccCCc--------HHHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHHh---------cC
Q 047480 99 MLSKGIVSPNNFTFPFVLNSCARLSSF--------KSGCQIHCHIIKF-GL-EFD-LFIRNALIHFYSI---------FG 158 (719)
Q Consensus 99 m~~~g~~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~y~~---------~g 158 (719)
.+.....+|+...|..-+.-..+.++. +..+++|+.++.. |. .++ ..+|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 887663226666666666554444433 3345777777654 65 443 4678777766542 34
Q ss_pred ChhHHHHHHccCCC
Q 047480 159 YINNAHKVFEGSLA 172 (719)
Q Consensus 159 ~~~~A~~~f~~~~~ 172 (719)
+++.++++|+....
T Consensus 209 ~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 57788888887543
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=4.4e-11 Score=125.92 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC---CCC----hhcHHHHHHHHHhCCC--------------------hhHHHH
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN---LKT----VSLFNSIISGLAQHGL--------------------GETSIA 435 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 435 (719)
++..+...|...|++++|...|++.... ..+ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4445556666666666666666554322 011 3367777778888888 888888
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccC----hhHHHHHHHHHHhcCCHHHHHH
Q 047480 436 VFREMELM----GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQ----MEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 436 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~eA~~ 505 (719)
.+++..+. +-.|. ..++..+...+...|++++|...+++..+..- .++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88776542 21222 23677888889999999999999999873210 111 3478889999999999999999
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHH
Q 047480 506 LIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 506 ~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.+++.- ..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998761 1122 4577788888999999999999999998875433 4578899999999999999999
Q ss_pred HHHHHHh
Q 047480 572 VRKLMDD 578 (719)
Q Consensus 572 ~~~~m~~ 578 (719)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2e-11 Score=124.64 Aligned_cols=198 Identities=12% Similarity=0.027 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCC----hhcHHHHHHHHHhCCC--------------------hhHHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN---LKT----VSLFNSIISGLAQHGL--------------------GETSI 434 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 434 (719)
.++..+...|...|++++|...|++.... ..+ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34455566666666666666666554321 111 2356677777777777 78888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-ccC----hhHHHHHHHHHHhcCCHHHHH
Q 047480 435 AVFREMELM----GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI-KPQ----MEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 435 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~eA~ 504 (719)
+.+++..+. +..|. ..++..+...+...|++++|...+++..+... .++ ...+..+...|.+.|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 877776532 11222 23677777788888999999999988773210 111 337788888999999999999
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHH
Q 047480 505 GLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 505 ~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 570 (719)
+.+++.- ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9888751 1122 4467777788999999999999999998765432 347889999999999999999
Q ss_pred HHHHHHHhC
Q 047480 571 QVRKLMDDS 579 (719)
Q Consensus 571 ~~~~~m~~~ 579 (719)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=4.7e-10 Score=113.33 Aligned_cols=220 Identities=10% Similarity=0.002 Sum_probs=132.8
Q ss_pred hHHHHHHHHhHhcCCCCChhHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 327 SQALELFGKMESLGIHPDEVTMVAVLRACV-------GLGAL-------DFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 327 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
++|+.+|++..... +-+...|......+. ..|+. ++|..+++ ...+.-.+.+..++..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~-rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE-RAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-HHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHH-HHHHHhCcccHHHHHHHHHHHH
Confidence 45666666666531 223444444444443 23554 66666666 4443211334556667777777
Q ss_pred hcCChHHHHHHHhcCCCCCC-Chh-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 047480 393 KCGSIDTALSVFYKIPKNLK-TVS-LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCAC-SHGGLVEEGK 469 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 469 (719)
+.|++++|.++|++.....| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776655422 333 67777777777777777777777777642 22233443332222 1257777777
Q ss_pred HHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 470 QFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDA--NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 470 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
.+|+..++.. +.+...|..+++.+.+.|++++|..+|++.- ..| ....|..++.....+|+.+.|..++++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776421 2236667777777777777777777777651 233 34567777777777777777777777777
Q ss_pred ccCCCCc
Q 047480 544 DLEPDHG 550 (719)
Q Consensus 544 ~~~p~~~ 550 (719)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=2.1e-11 Score=136.52 Aligned_cols=163 Identities=14% Similarity=0.176 Sum_probs=142.4
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGC 489 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 489 (719)
.+..+|+.+...|.+.|++++|++.|++.++. .|+. .++..+..++.+.|++++|.+.|++.++. .|+ ...|..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 45668899999999999999999999998884 6664 58888999999999999999999999864 455 778999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWE 567 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (719)
+..+|.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999886 4455 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047480 568 EARQVRKLMDD 578 (719)
Q Consensus 568 ~A~~~~~~m~~ 578 (719)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=5.8e-11 Score=109.85 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=144.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
.+..+|..+...|.+.|++++|.+.|++..+. |.++.+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45678888999999999999999999987655 5778899999999999999999999999998752 234457777778
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
.+...++++.+...+....+.. +.+...+..+..+|.+.|++++|++.+++. ...| +..+|..+...+...|+.++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999998643 334778889999999999999999999887 3444 677899999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 047480 536 EIAGQKLLDLEPDHG 550 (719)
Q Consensus 536 ~~~~~~~~~~~p~~~ 550 (719)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=1.1e-10 Score=122.09 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=125.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCC-CCC----hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGI-HPD----EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
....+...|++++|+..|++....-. .+| ..++..+...+...|+.+.|...+.+.+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 44556677777777777777764210 112 23444555555556666655555552111
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCc
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPDG----VTFVTVLCACSHGGL 464 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~ 464 (719)
++...... +....+++.+...|...|++++|++.|++..+..- .++. .++..+...+...|+
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 172 ------------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp ------------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 11111110 01123455556666666666666666665553210 0111 255556666666666
Q ss_pred HHHHHHHHHHHHHc----CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC-
Q 047480 465 VEEGKQFFESMLNY----GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP----Y--DAN-SVIWRALLAACRLHRN- 531 (719)
Q Consensus 465 ~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~----~--~p~-~~~~~~ll~~~~~~g~- 531 (719)
+++|.+.+++..+. +..|. ..++..+...|.+.|++++|.+.+++.- . .|. ...+..+...+...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 66666666666531 22122 4456666666667777777666666541 0 111 1123444444555566
Q ss_pred --hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 --AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 320 ~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 320 EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666665555 23333445677788888888888888888877764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=2.8e-10 Score=119.00 Aligned_cols=227 Identities=10% Similarity=0.046 Sum_probs=158.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-CCC-----hhHHH
Q 047480 285 MISGYTREGKIERARQLFDQMDQ-----RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPD-----EVTMV 349 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~~ 349 (719)
....+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 56677888999999999988754 22 34688889999999999999999988765210 111 12333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CCChhcHHHHHH
Q 047480 350 AVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-------LKTVSLFNSIIS 422 (719)
Q Consensus 350 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~ 422 (719)
.+. ..|...|++++|...|++.... .....+|+.+..
T Consensus 189 ~lg------------------------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 189 LFA------------------------------------TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHH------------------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH------------------------------------HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344 4444444444444444433211 011236777888
Q ss_pred HHHhCCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccChhHHHHHHHH
Q 047480 423 GLAQHGLGETSIAVFREMELM----GLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQMEHYGCMVDL 493 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~ 493 (719)
.|...|++++|++.|++..+. +..|+. .++..+...+...|++++|...+++..+. +-+.....+..+...
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888887762 232443 47888888899999999999999887732 111123346778888
Q ss_pred HHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 494 LARDGR---LDEAYGLIQSMPYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 494 ~~~~g~---~~eA~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
|...|+ +++|+.++++....|+. ..+..+...+...|+.++|...+++++++..
T Consensus 313 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999998 89999999998655543 3566777789999999999999999887543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=122.53 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhc-------CCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhH
Q 047480 311 VSWTAMISGYSQVGGFSQALELFGKMESL-------GIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFL 383 (719)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 383 (719)
.+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+.+.+...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 35666667777777777777777776642 112223445555566666666666666665222110
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcC--CCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCH-HHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKI--PKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM------GLKPDG-VTFVT 454 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ 454 (719)
... ...+....+|..+...|...|++++|++.|++..+. +-.|+. ..+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000 000122334555555666666666666666655542 112222 34555
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc------CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-H
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNY------GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP----------YDAN-S 516 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~----------~~p~-~ 516 (719)
+...+...|++++|.++++++.+. +-.|. ...+..+..+|.+.|++++|.+.++++- ..+. .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666666667777777766666532 11222 3456666677777777777776666541 1111 1
Q ss_pred ------HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 517 ------VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 517 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222223344455666677777777778888888899999999999999999999988764
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=1e-10 Score=119.34 Aligned_cols=135 Identities=10% Similarity=-0.004 Sum_probs=97.7
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccC-
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD----GVTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQ- 483 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~- 483 (719)
...+..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..++++..+. +-.+.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 34677778888888999999988888765210 112 126777778888899999999999887732 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
...+..+...|...|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5577788899999999999999888761 1112 346777888899999999999999999987764
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=3.8e-11 Score=126.89 Aligned_cols=275 Identities=12% Similarity=0.003 Sum_probs=188.3
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHc-CCCCc-h----HHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CC
Q 047480 245 SNMLLKTAVINMYAKCGLMNMAERVFSTM-GMSKS-T----AAWSSMISGYTREGKIERARQLFDQMDQ---------RD 309 (719)
Q Consensus 245 ~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~-~----~~~~~li~~y~~~g~~~~A~~~f~~m~~---------~~ 309 (719)
.....+..+...+...|++++|...+++. ...|+ . .++..+...|...|++++|...|++..+ ..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667788999999999999999988 32333 2 5788999999999999999999987643 12
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhc----CCCC-ChhHHHHHHHHHHccCC----------hHHHHHHHHHHHHH
Q 047480 310 LVSWTAMISGYSQVGGFSQALELFGKMESL----GIHP-DEVTMVAVLRACVGLGA----------LDFGKRLHQQYIEN 374 (719)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~----------~~~a~~~~~~~~~~ 374 (719)
..+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ .+.+...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------- 198 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------- 198 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------
Confidence 346778888888999999999998887653 1011 12233444444444444 1111111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-C
Q 047480 375 VVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIP-------KNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGL-K 446 (719)
Q Consensus 375 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 446 (719)
+++|.+.|++.. ..+.....|..+...|...|++++|++.|++..+... .
T Consensus 199 ----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 199 ----------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 444444333321 1012234677788888888898888888888765311 1
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----Cc-cChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CC
Q 047480 447 PD----GVTFVTVLCACSHGGLVEEGKQFFESMLNYG----IK-PQMEHYGCMVDLLARDGRLDEAYGLIQSMP----YD 513 (719)
Q Consensus 447 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~ 513 (719)
++ ..++..+...+...|++++|...+++..+.. -. .....+..+..+|.+.|++++|.+.+++.- ..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 1267778888899999999999998877321 11 114677888899999999999999988761 11
Q ss_pred CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 514 AN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 514 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
++ ..++..+...+...|+.++|...+++++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 12 346777788899999999999999999987764
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=4.4e-10 Score=113.56 Aligned_cols=215 Identities=8% Similarity=0.014 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhcCCC-C-CCChhcHHHHHHHHH
Q 047480 362 DFGKRLHQQYIENVVFGRNIFLTTAVIDMYA-------KCGSI-------DTALSVFYKIPK-N-LKTVSLFNSIISGLA 425 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~-------k~g~~-------~~A~~~~~~~~~-~-~~~~~~~~~li~~~~ 425 (719)
+.|..++++.+... +.+..+|..++..+. +.|++ ++|..+|++... . +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56667777444433 466777877777775 45886 899999999776 3 456779999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH-hcCCHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA-RDGRLDE 502 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~e 502 (719)
+.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+++++.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998 466543 78888999999999999999999999643 233455544444322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDL---EPD-HGAHYVLLSNMLAETYRWEEARQVRKLM 576 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 576 (719)
|.++|++. ...| +...|..++..+...|+.++|..+++++++. .|+ ....|..++..+.+.|++++|..+++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 2223 6789999999999999999999999999985 553 5668889999999999999999999999
Q ss_pred HhCCC
Q 047480 577 DDSGI 581 (719)
Q Consensus 577 ~~~~~ 581 (719)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87643
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=1.1e-09 Score=114.30 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=126.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCC-CCC----hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047480 316 MISGYSQVGGFSQALELFGKMESLGI-HPD----EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDM 390 (719)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 390 (719)
....+...|++++|+..|++....-. .++ ..++..+..++...|+++.|...+.+.+.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~----------------- 169 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD----------------- 169 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------------
Confidence 34445677788888888777764310 122 22344444455555555555555442111
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCc
Q 047480 391 YAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELM----GLKPD-GVTFVTVLCACSHGGL 464 (719)
Q Consensus 391 y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~ 464 (719)
++...... .....+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|+
T Consensus 170 ------------~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 170 ------------IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ------------HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 11111110 011334566666666667777776666665542 11111 1255566666777777
Q ss_pred HHHHHHHHHHHHHc----CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC--
Q 047480 465 VEEGKQFFESMLNY----GIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM----PY--DANS-VIWRALLAACRLHRN-- 531 (719)
Q Consensus 465 ~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~--~p~~-~~~~~ll~~~~~~g~-- 531 (719)
+++|.+.|++..+. +.+....++..+...|.+.|++++|.+.+++. +. .|.. ..+..+...+...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 77777777766631 21222556666777777777777777777664 11 1222 233333334555555
Q ss_pred -hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 -AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.++|...+++. ...|+....+..++..|...|++++|.+.+++..+
T Consensus 318 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666655552 22333345667788888888888888888877653
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=4.2e-10 Score=103.66 Aligned_cols=161 Identities=14% Similarity=-0.001 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSH 461 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (719)
.+..+...|...|++++|...|+++... +.+...|..+...+...|++++|.+.++++.+. .|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~-------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP-------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--------------
Confidence 3445555566666666666666665543 334445555555555555555555555555443 12
Q ss_pred cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047480 462 GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAKIGEIAG 539 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (719)
.+...+..+...|...|++++|.+.++++ . .+.+...|..+...+...|++++|...+
T Consensus 74 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 74 --------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp --------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 22344444555555555555555555544 1 1224556666666677777777777777
Q ss_pred HHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 540 QKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777778888888888888888877777654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.1e-09 Score=100.74 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHH
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISG 423 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 423 (719)
...+..+...+...|++++|...+. .+.+.. +.+..++..+...|...|++++|...|+++... +.+...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLE-QVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHT-TTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHH-HHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3456677888899999999999998 443332 356788899999999999999999999987654 4577788888999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA 503 (719)
+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999888752 3345566667777777777777777777776432 22234444444555555554444
Q ss_pred HHHHHh
Q 047480 504 YGLIQS 509 (719)
Q Consensus 504 ~~~~~~ 509 (719)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=1.1e-09 Score=105.20 Aligned_cols=165 Identities=8% Similarity=-0.050 Sum_probs=86.1
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHH
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMV 491 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li 491 (719)
|+..|......+...|++++|++.|++..+....++...+..+..++...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 334445555555555555555555555554332244444444555555555555555555555542 232 44455555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHHH
Q 047480 492 DLLARDGRLDEAYGLIQSM-PYDA-NS-------VIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--HGAHYVLLSNML 560 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~~-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 560 (719)
.+|.+.|++++|++.+++. ...| +. ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555555544 1222 22 23444444455555555555555555555555 555555555555
Q ss_pred hhcCCh---------------------------HHHHHHHHHHHhC
Q 047480 561 AETYRW---------------------------EEARQVRKLMDDS 579 (719)
Q Consensus 561 ~~~g~~---------------------------~~A~~~~~~m~~~ 579 (719)
...|+. ++|...+++..+.
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555544 7777777777654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=1.5e-08 Score=105.40 Aligned_cols=195 Identities=14% Similarity=0.023 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC-----C---C-ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--C--CHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKN-----L---K-TVSLFNSIISGLAQHGLGETSIAVFREMELMGLK--P--DGV 450 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 450 (719)
...+...|...|++++|...+++.... . + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666677777776666554321 0 1 2235566777788888888888888887753221 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh-hHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM-EHYG-----CMVDLLARDGRLDEAYGLIQSMP-YDAN-----SVI 518 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~-----~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~ 518 (719)
++..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5666777788889999999888887732111111 1121 23345778899999999988872 2221 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..+...+...|+.++|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666677888899999999998887653321 23677888999999999999999888765
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=1.3e-09 Score=104.69 Aligned_cols=206 Identities=9% Similarity=0.006 Sum_probs=146.2
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHH
Q 047480 343 PDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSII 421 (719)
Q Consensus 343 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li 421 (719)
.|+..+......+...|++++|...+. ...+...+++...+..+...|.+.|++++|...|++.... +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYS-EYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHH-HHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 355677777888888888999988888 4444443356666666888888888888888888887654 45666788888
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC---hhHHHHH
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPD-G-------VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ---MEHYGCM 490 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l 490 (719)
..|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|.+.|+++++. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 8888888888888888888874 444 3 34666667777888888888888888753 444 4567777
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 491 VDLLARDGRL--DEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 491 i~~~~~~g~~--~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
..+|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777666543 2222211 12333333332 33456689999999999999999988777776654
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=3.7e-10 Score=121.36 Aligned_cols=180 Identities=8% Similarity=-0.025 Sum_probs=157.6
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLG-ETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
++++...++..... +.+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+...+...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666666655444 45778899999999999999 9999999999985 455 5689999999999999999999999
Q ss_pred HHHHcCCccChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChhH
Q 047480 474 SMLNYGIKPQMEHYGCMVDLLARD---------GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH--------RNAKI 534 (719)
Q Consensus 474 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~~ 534 (719)
++.+. .|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99964 57788899999999999 9999999999987 3344 678899999999888 99999
Q ss_pred HHHHHHHHhccCC---CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 535 GEIAGQKLLDLEP---DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 535 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|+..++++++++| +++..|..++.+|...|++++|.+.+++..+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999998754
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=2.1e-10 Score=115.73 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=141.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---ChhhHHHHHHHHHhcCChhHHHHHHHHhHhc------C
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--------R---DLVSWTAMISGYSQVGGFSQALELFGKMESL------G 340 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 340 (719)
+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455677777777777888777777776653 1 2345777888888899999999988887653 1
Q ss_pred CCC-ChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC--CCCCCChhcH
Q 047480 341 IHP-DEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKI--PKNLKTVSLF 417 (719)
Q Consensus 341 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~--~~~~~~~~~~ 417 (719)
-.| ...++..+...+...|++++|...+.+.+... ... ...+.....|
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-----------------------------EKVLGKDHPDVAKQL 156 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHHCTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-----------------------------HHhcCCCChHHHHHH
Confidence 112 23445555666666666666666665222110 000 0001233456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCccC
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELM------GLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNY-------GIKPQ 483 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------g~~p~ 483 (719)
..+...|...|++++|+++|+++.+. +..|+. .++..+...+...|++++|.++++++.+. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66667777777777777777776653 213332 35666777777778888888777777632 11122
Q ss_pred h-------hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 484 M-------EHYGCMVDLLARDGRLDEAYGLIQSMP-YDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 484 ~-------~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
. ..+..+...+...+.+.+|...++... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 122222333444555556666666653 233 4467888888899999999999999999988775
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=2.1e-08 Score=104.50 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-CCC-----hhHH
Q 047480 284 SMISGYTREGKIERARQLFDQMDQ-----RD----LVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPD-----EVTM 348 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~ 348 (719)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+... .++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566788999999999987654 22 34678888999999999999999998765210 111 2344
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCC
Q 047480 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 349 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 428 (719)
..+..++...|++++|.+.+.+.+. ++...........+++.+...|...|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~-----------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALE-----------------------------LAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 4555555556666666555552111 11111110011235666777777777
Q ss_pred ChhHHHHHHHHHHHcC---CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---ccC-hhHHHHHHHHHHhcCC-
Q 047480 429 LGETSIAVFREMELMG---LKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGI---KPQ-MEHYGCMVDLLARDGR- 499 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g---~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~- 499 (719)
++++|++.|++..+.. ..|+ ..++..+...+.+.|++++|..++++..+..- .|. ...+..+...|...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 7777777777766510 1222 44677777788888888888888888773211 111 3456666677777777
Q ss_pred --HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 047480 500 --LDEAYGLIQSMPYDANS-VIWRALLAACRLHRNAKIGEIAGQKLLDL 545 (719)
Q Consensus 500 --~~eA~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (719)
+++|+..+++....|+. ..+..+...+...|+.++|...++++++.
T Consensus 317 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 317 RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888886544433 34556666788888999998888887653
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=6.3e-10 Score=124.52 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=139.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVL 456 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 456 (719)
.+...++.|...|.+.|++++|.+.|++..+. +.+...|+.+...|.+.|++++|++.|++.++. .|+. ..|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34567788888999999999999999887654 467788999999999999999999999999884 6664 5888999
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 457 CACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
.++...|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999864 455 778999999999999999999999886 4555 5678888999999999999
Q ss_pred HHHHHHHHHhccCC
Q 047480 534 IGEIAGQKLLDLEP 547 (719)
Q Consensus 534 ~a~~~~~~~~~~~p 547 (719)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887644
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=2.8e-09 Score=105.54 Aligned_cols=196 Identities=11% Similarity=0.121 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC---------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN---------LKTVSLFNSIISGLAQHGLGETSIAVFREMELM------GLKP 447 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 447 (719)
++..+...|...|++++|...|++.... +....+|..+...|...|++++|++.|++..+. .-.|
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344444455555555555544443211 123446777777777777777777777777653 1123
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc------CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------
Q 047480 448 D-GVTFVTVLCACSHGGLVEEGKQFFESMLNY------GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMP-------- 511 (719)
Q Consensus 448 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~-------- 511 (719)
+ ..++..+...+...|++++|..+++++.+. +-.|+ ...+..+..+|.+.|++++|.+.++++-
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3 246777777788888888888888877743 11222 5567778888888888888888877651
Q ss_pred --CCC-CHHHHHHHHHHHHhcCCh------hHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 512 --YDA-NSVIWRALLAACRLHRNA------KIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 512 --~~p-~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+ ....|..+.......+.. ..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122 223344433333333322 2223333333334455567888999999999999999999998765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=2e-08 Score=100.40 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=131.1
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhc----CCCCC-hhHHHHHHHHHHccCChHHHHHHH
Q 047480 294 KIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESL----GIHPD-EVTMVAVLRACVGLGALDFGKRLH 368 (719)
Q Consensus 294 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 368 (719)
++++|...|++. ...|...|++++|++.|.+.... |-+++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777766653 45567778888888888776542 21111 234555555555555555555555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC-CChhHHHHHHHHHHHcCCC-
Q 047480 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH-GLGETSIAVFREMELMGLK- 446 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~- 446 (719)
.+ ..+ .+...|+...+ ..+|+.+...|... |++++|+..|++..+....
T Consensus 101 ~~-Al~---------------l~~~~g~~~~~-------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 101 EN-AIQ---------------IFTHRGQFRRG-------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp HH-HHH---------------HHHHTTCHHHH-------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HH-HHH---------------HHHHcCCHHHH-------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 52 111 11112221111 23567777778875 8888888888877653100
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047480 447 PD----GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM------EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN 515 (719)
Q Consensus 447 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~ 515 (719)
.+ ..++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...+++. ...|+
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 01 235777778888888888888888888864322221 14667777888888888888888876 34443
Q ss_pred HH------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCchhH
Q 047480 516 SV------IWRALLAACR--LHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 516 ~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
.. .+..++.++. ..+++++|...++++.+++|.....+
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 22 2344455554 34567788888888888877654333
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=1.1e-06 Score=91.03 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCC--C--ChhH
Q 047480 283 SSMISGYTREGKIERARQLFDQMDQ-------R----DLVSWTAMISGYSQVGGFSQALELFGKMESLGIH--P--DEVT 347 (719)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 347 (719)
..+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444445555555555555444321 1 1123444555566666666666666665542111 1 1123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHhcCCCCCC-C----hhcH
Q 047480 348 MVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTT-----AVIDMYAKCGSIDTALSVFYKIPKNLK-T----VSLF 417 (719)
Q Consensus 348 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~y~k~g~~~~A~~~~~~~~~~~~-~----~~~~ 417 (719)
+..+...+...|++++|...+.+.............+. ..+..+...|++++|...+++.....+ + ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44455555666666666666653222111111101111 233446677888888877777655311 1 1134
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELM----GLKPDGV-TFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..+...+...|++++|...+++.... |..++.. ++..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55566677777777777777665432 1111111 33334444555556666655555544
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=4.8e-08 Score=95.79 Aligned_cols=206 Identities=9% Similarity=-0.017 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCC---hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC-HHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKT---VSLFNSIISGLAQHGLGETSIAVFREMELMGL-KPD-GVTFV 453 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 453 (719)
+...+-.+...+.+.|++++|...|+++... +.+ ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444455566667777777777777776554 223 45666677777777777777777777776421 112 22455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047480 454 TVLCACSH--------GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLA 524 (719)
Q Consensus 454 ~ll~a~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~ 524 (719)
.+..++.. .|++++|...|+++++. .|+ ......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555656 77777777777777642 233 22222221111111111 112455667
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHhhc----------CChHHHHHHHHHHHhCCCCCCCcccEEE
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSNMLAET----------YRWEEARQVRKLMDDSGIQKPPGWSYIE 591 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 591 (719)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 78899999999999999999999854 4788999999877 999999999999987532
Q ss_pred ECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 047480 592 HNGTLHRFLASKKSHPQTKEIELMLKDMTMKLKS 625 (719)
Q Consensus 592 ~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 625 (719)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 244556666677777666654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=2e-08 Score=99.38 Aligned_cols=165 Identities=10% Similarity=0.054 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc------CCC
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKN---------LKTVSLFNSIISGLAQHGLGETSIAVFREMELM------GLK 446 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 446 (719)
.++..+...|...|++++|...|++.... +....+|..+...|...|++++|++.|++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555555543321 123456777888888888888888888887764 113
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCccC-hhHHHHHHHHHHhcC------CHHHHHHHHHhCC
Q 047480 447 PD-GVTFVTVLCACSHGGLVEEGKQFFESMLNY-------GIKPQ-MEHYGCMVDLLARDG------RLDEAYGLIQSMP 511 (719)
Q Consensus 447 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------g~~p~-~~~~~~li~~~~~~g------~~~eA~~~~~~~~ 511 (719)
|+ ..++..+...+...|++++|..+++++.+. ...+. ...+..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 33 246777888888889999999988887742 11222 333444444433322 3445555555553
Q ss_pred C-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 512 Y-DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 512 ~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
. .| ...++..+...+...|++++|...++++++..
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2 23 34567788888999999999999999988753
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=1.4e-07 Score=92.57 Aligned_cols=177 Identities=8% Similarity=-0.061 Sum_probs=118.7
Q ss_pred HHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 047480 400 ALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLN 477 (719)
Q Consensus 400 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (719)
|...|++.... .++..++..+..++...|++++|++++.+.+..+-.++. ..+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55666655543 245555567777788888888888888877655432333 4666777778888888888888888875
Q ss_pred cCCcc-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--
Q 047480 478 YGIKP-----QMEHYGCMVDL--LARDG--RLDEAYGLIQSMP-YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDL-- 545 (719)
Q Consensus 478 ~g~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 545 (719)
. .| +..+...|..+ ....| ++++|..+|+++. ..|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2 45 24444445544 33334 7888888888873 3344333344444777788888888888877765
Q ss_pred --------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 546 --------EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 546 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|+++.++..++......|+ +|.++++++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777777777777776 7888888887643
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=1.2e-08 Score=102.01 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=156.7
Q ss_pred HHHHHHHHhHhcCCCCChhHHHHHHHHHHcc--C-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047480 328 QALELFGKMESLGIHPDEVTMVAVLRACVGL--G-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVF 404 (719)
Q Consensus 328 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 404 (719)
+|.+++++..+. .++....| .++ +. + ++++|...+.+ . ...|...|++++|...|
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~-a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQ-A---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHH-H---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHH-H---------------HHHHHHcCCHHHHHHHH
Confidence 466677776654 23222112 222 22 2 47778777772 2 45678899999999888
Q ss_pred hcCCCC---C--C--ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHH
Q 047480 405 YKIPKN---L--K--TVSLFNSIISGLAQHGLGETSIAVFREMELMGL---KPD--GVTFVTVLCACSHG-GLVEEGKQF 471 (719)
Q Consensus 405 ~~~~~~---~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~ 471 (719)
++.... . + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 765432 0 1 145799999999999999999999998876311 111 24788888899996 999999999
Q ss_pred HHHHHHcCCcc-C----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCChhHHHH
Q 047480 472 FESMLNYGIKP-Q----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA---NS-----VIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 472 ~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~-----~~~~~ll~~~~~~g~~~~a~~ 537 (719)
|++.++..... + ...+..+...|.+.|++++|++.+++. ...| +. ..|..+...+...|+++.|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988421110 1 356888999999999999999999986 2222 21 146667777889999999999
Q ss_pred HHHHHhccCCCCchh-----HHHHHHHHh--hcCChHHHHHHHHHHH
Q 047480 538 AGQKLLDLEPDHGAH-----YVLLSNMLA--ETYRWEEARQVRKLMD 577 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 577 (719)
.++++++++|+.+.. +..++..|. ..+++++|...++.+.
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999999986543 344566664 5677888888876654
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=2.5e-09 Score=95.02 Aligned_cols=140 Identities=10% Similarity=-0.046 Sum_probs=97.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHH
Q 047480 423 GLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLD 501 (719)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 501 (719)
.+...|+.++|++.+++.... .|+. ..+..+...|.+.|++++|.+.|++.++.. +-+...|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344455666666666665432 3333 345556666777777777777777776532 223667777777888888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEI-AGQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
+|+..|++. ...| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888877775 3445 46678888888888888876555 4689999999999999998888888775
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=3.2e-08 Score=85.21 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=70.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDANSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~ 533 (719)
...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++ . .+.+...|..+...+...|+++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence 333444444444444444444221 122334444445555555555555555444 1 1223445566666666677777
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777776653
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=6.9e-08 Score=83.11 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=97.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46667777778888888888888877643 2345567777777778888888888888877543 334667777888888
Q ss_pred hcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 496 RDGRLDEAYGLIQSM-PY-DANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
+.|++++|.+.++++ .. +.+..+|..+...+...|+.++|...++++++..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888776 22 235667777888888888888888888888888775
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=1.6e-08 Score=113.79 Aligned_cols=169 Identities=10% Similarity=-0.048 Sum_probs=133.4
Q ss_pred HhcCChHHHHHHHhcCC--------CC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 047480 392 AKCGSIDTALSVFYKIP--------KN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSH 461 (719)
Q Consensus 392 ~k~g~~~~A~~~~~~~~--------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 461 (719)
...|++++|.+.|++.. .. +.+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56788888888887765 32 456778888888888999999999999988874 454 4577788888888
Q ss_pred cCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 047480 462 GGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIA 538 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 538 (719)
.|++++|.+.|+++++. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988864 34 36778888888999999988 8888876 3344 566788888888899999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCC
Q 047480 539 GQKLLDLEPDHGAHYVLLSNMLAETYR 565 (719)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (719)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988888889888877665
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=1.2e-07 Score=90.48 Aligned_cols=181 Identities=10% Similarity=-0.016 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-C---hhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHH
Q 047480 382 FLTTAVIDMYAKCGSIDTALSVFYKIPKNLK-T---VSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGV----TFV 453 (719)
Q Consensus 382 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 453 (719)
..+..+...+.+.|++++|...|+++....| + ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777788888777777654312 2 245666777777778888888887777764 34332 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047480 454 TVLCACSH------------------GGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSMPYDA 514 (719)
Q Consensus 454 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 514 (719)
.+..++.. .|+.++|...|+.+++. .|+ ...+.++..+. ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----HHHHHH----------
Confidence 33333322 34555555555555531 222 11111111000 000000
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112344557889999999999999999999976 5688999999999999999999999988654
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.2e-07 Score=87.82 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=134.3
Q ss_pred HHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHH
Q 047480 400 ALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG----LVEEGKQFFESM 475 (719)
Q Consensus 400 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 475 (719)
|.+.|++..+. .++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++.
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44444443332 567778888888888888889999888888765 55666667777777 6 889999999988
Q ss_pred HHcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 047480 476 LNYGIKPQMEHYGCMVDLLAR----DGRLDEAYGLIQSMP-YDAN---SVIWRALLAACRL----HRNAKIGEIAGQKLL 543 (719)
Q Consensus 476 ~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 543 (719)
.+.| +...+..|..+|.. .+++++|++++++.- ..|. ...+..|...|.. .++.++|...++++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8654 46677778888877 789999999998874 3332 6778888888877 788999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhc-C-----ChHHHHHHHHHHHhCCC
Q 047480 544 DLEPDHGAHYVLLSNMLAET-Y-----RWEEARQVRKLMDDSGI 581 (719)
Q Consensus 544 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 581 (719)
++ |+++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778899999999764 3 89999999999887763
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=1.4e-07 Score=93.95 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=127.3
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCM 490 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 490 (719)
.+...+..+...+.+.|++++|+..|++..+. .|+. ..+..+...+...|++++|...++.+... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 55566777778888899999999999988874 5544 57778888888999999999999887743 4554333222
Q ss_pred -HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCC
Q 047480 491 -VDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH--GAHYVLLSNMLAETYR 565 (719)
Q Consensus 491 -i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 565 (719)
...+.+.|+.++|.+.+++. ...| +...+..+...+...|+.++|+..++++++.+|++ ...+..++.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 23366777788888888776 3344 56788888888999999999999999999999988 7889999999999999
Q ss_pred hHHHHHHHHHHH
Q 047480 566 WEEARQVRKLMD 577 (719)
Q Consensus 566 ~~~A~~~~~~m~ 577 (719)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999988877654
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.75 E-value=1.1e-06 Score=86.11 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C--CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-----CHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-L--KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKP-----DGV 450 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~ 450 (719)
++......+..+|...|++++|++++.+.... + .+...+-.++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 33444456667777788888888888776332 1 34556777788888899999999999988773 66 355
Q ss_pred HHHHHHHHH--hc--cCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CC-
Q 047480 451 TFVTVLCAC--SH--GGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP-Y----------DA- 514 (719)
Q Consensus 451 t~~~ll~a~--~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~----------~p- 514 (719)
+...+..++ .. .++..+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+. . .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 556666552 22 33888999999998743 3443333444458889999999999987642 1 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
|+.+...++......|+ .|.++.+++.+..|+++..
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 45566566666666676 7889999999999998744
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=4.3e-08 Score=86.63 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=88.2
Q ss_pred CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 480 IKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 480 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3454 556777888899999999999999887 3445 677899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 047480 557 SNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+.+|...|++++|.+.+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988753
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.72 E-value=1.9e-08 Score=89.26 Aligned_cols=123 Identities=11% Similarity=-0.013 Sum_probs=102.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRN 531 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 531 (719)
|...+...|++++|...++.... ..|+ ...+-.+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34456677899999999998874 2344 556667899999999999999999987 4455 67789999999999999
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH-HHHHHhC
Q 047480 532 AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQV-RKLMDDS 579 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 579 (719)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5776653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=9.4e-08 Score=87.31 Aligned_cols=157 Identities=10% Similarity=0.011 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGG 463 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (719)
..+...+.+.|++++|...|++.... |.+...|..+...+...|++++|+..|++..+. .|+.. +..+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~-------- 78 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSL-------- 78 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHH--------
Confidence 34445555566666666666655543 344455555555555556666665555554432 22221 1111
Q ss_pred cHHHHHHHHHHHHHcCCccChhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 047480 464 LVEEGKQFFESMLNYGIKPQMEHYGCMVDL-LARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQ 540 (719)
Q Consensus 464 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (719)
+... +.+.+...+|.+.+++. ...| +...|..+...+...|++++|...++
T Consensus 79 --------------------------~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 79 --------------------------IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp --------------------------HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------------HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1101 11111112344444443 2334 46677777777888888888888888
Q ss_pred HHhccCCCC--chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 541 KLLDLEPDH--GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 541 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888888864 45788888889899999888888877653
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=1.9e-07 Score=93.95 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=148.3
Q ss_pred cCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047480 323 VGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALS 402 (719)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 402 (719)
.|++++|.+++++..+.. +.. + +...++++.|...+.+ ....|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHHHH
Confidence 466777888777766531 111 0 1113666777666662 2445667788887777
Q ss_pred HHhcCCCC---CCC----hhcHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 047480 403 VFYKIPKN---LKT----VSLFNSIISGLAQHGLGETSIAVFREMELMG---LKPD--GVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 403 ~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
.|.+.... ..+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77654332 111 3468888888999999999999998876531 1222 2467788888888 99999999
Q ss_pred HHHHHHHc----CCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 047480 471 FFESMLNY----GIKP-QMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 471 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
.|++.++. +-.+ ....+..+...|.+.|++++|++.+++.- ..++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988742 1111 14678888999999999999999998761 1122 1255566666777899999999
Q ss_pred HHHHHhccCCCCchh-----HHHHHHHHhhcCChHHHHH
Q 047480 538 AGQKLLDLEPDHGAH-----YVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 571 (719)
.+++++ +.|+.... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99976533 33455555 5677666555
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=1.3e-07 Score=89.01 Aligned_cols=125 Identities=6% Similarity=0.001 Sum_probs=91.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC-hhHHHHHHHHHHhc
Q 047480 420 IISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ-MEHYGCMVDLLARD 497 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 497 (719)
+...|.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|+++++. .|+ ...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788888999999999999988874 454 457888888888999999999999998864 344 67788888887666
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 498 GR--LDEAYGLIQSMPYDANSV--IWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 498 g~--~~eA~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
|. .+++...++... .|+.. .|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 345566666653 34433 34444455667788999999999999999974
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=1.7e-07 Score=103.42 Aligned_cols=161 Identities=9% Similarity=-0.040 Sum_probs=121.8
Q ss_pred cCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 047480 394 CGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQF 471 (719)
Q Consensus 394 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 471 (719)
.|++++|.+.|++..+. +.+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788888888887765 566788999999999999999999999999874 454 56888888899999999999999
Q ss_pred HHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhccC
Q 047480 472 FESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH---RNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 472 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 546 (719)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998643 234778889999999999999999999887 3344 567888888889999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 047480 547 PDHGAHYVLLS 557 (719)
Q Consensus 547 p~~~~~~~~l~ 557 (719)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777666
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=1.6e-07 Score=103.49 Aligned_cols=152 Identities=16% Similarity=0.021 Sum_probs=117.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 047480 427 HGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYG 505 (719)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 505 (719)
.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.|++..+.. +.+...+..+..+|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998874 555 5688888999999999999999999998643 2347889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc---CChHHHHHHHHHHHhCC
Q 047480 506 LIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET---YRWEEARQVRKLMDDSG 580 (719)
Q Consensus 506 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~ 580 (719)
.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99987 3344 5678999999999999999999999999999999999999999999999 99999999999887654
Q ss_pred C
Q 047480 581 I 581 (719)
Q Consensus 581 ~ 581 (719)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.68 E-value=3.4e-07 Score=102.91 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=145.2
Q ss_pred HccCChHHHHHHHHHHHH------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCC
Q 047480 356 VGLGALDFGKRLHQQYIE------NVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g 428 (719)
...+++++|.+.+.+.+. ....+.+...+..+...|.+.|++++|.+.|++..+. +.+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667788888888873330 0122455677788888899999999999999887765 577889999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
++++|++.|++..+. .|+ ...+..+..++...|++++ .+.|+++++.. +.+...|..+..+|.+.|++++|++.+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999985 564 4688888889999999999 99999998643 234778899999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCchhH
Q 047480 508 QSM-PYDAN-SVIWRALLAACRLHRN-----AKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 508 ~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
+++ ...|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 998 46676 4567777666655454 3444445555555655555443
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=8.8e-08 Score=84.60 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=89.9
Q ss_pred HHHHHHHcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 047480 471 FFESMLNYGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 471 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (719)
.|+.+.. +.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3444443 3343 566777888899999999999999886 3344 677888888889999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 548 DHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+++..+..++.+|...|++++|.+.++...+..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999987643
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=1.6e-05 Score=85.17 Aligned_cols=372 Identities=11% Similarity=-0.007 Sum_probs=191.9
Q ss_pred cC-CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCC-cchHHHH
Q 047480 122 LS-SFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLA--RDLVSYNTLINGYAQVKE-PCPALWL 197 (719)
Q Consensus 122 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 197 (719)
.| ++..|+.+++.++..= |. |+++.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 35 3677777777776542 22 889999999987443 688889988887777663 4567778
Q ss_pred HHHHHHC-CCCC-ChhhHHHHHHHHhc----cCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 047480 198 FRKMQDS-CIQP-DAFTFVAMFSACTE----LNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFS 271 (719)
Q Consensus 198 ~~~m~~~-g~~p-d~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~ 271 (719)
|+..... |..| +...|...+.-+.. .++.+.++.+++.+++. +...-...|......-... ....+..++.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~-~~~~~~~~~~ 147 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELEL-NKITGKKIVG 147 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHh-ccccHHHHHH
Confidence 8877653 5433 55566666665432 35677788888888864 2222222232222221111 1111222211
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCC-------hhHHHHHHHHhHhcC
Q 047480 272 TMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ----RDLVSWTAMISGYSQVGG-------FSQALELFGKMESLG 340 (719)
Q Consensus 272 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 340 (719)
-+. +.+..|..+++.+.. .+...|...+.--..++. .+.+..+|+++....
T Consensus 148 ----------------~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 148 ----------------DTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ----------------HHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------HHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 111 122233333322211 233456555543322211 234567777777643
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHhcCC--C-------C
Q 047480 341 IHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA-LSVFYKIP--K-------N 410 (719)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~--~-------~ 410 (719)
+.+...|...+.-+...|+.+.|..+++ ..... +.+..++. .|+...+.++. ..+.+... . .
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~e-rAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVE-RGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------C
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 3456666666777777788888888888 44444 33433332 23222211111 11111110 0 0
Q ss_pred -CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCccChhHHH
Q 047480 411 -LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA-CSHGGLVEEGKQFFESMLNYGIKPQMEHYG 488 (719)
Q Consensus 411 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 488 (719)
......|...+....+.++.+.|..+|++. +. ..++...|...... +...++++.|+.+|+...+.- +-+...+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~ 358 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence 011234666666666666777777777777 21 11222233211111 111235777777777776421 12234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
..++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666677777777777777763 245566666666566666666666555554
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=2.8e-07 Score=78.73 Aligned_cols=108 Identities=10% Similarity=-0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+......+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555556666666666666666666432 223556666666666666666666666654 2233 45566666666777
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
.|++++|+..++++++++|+++.++..|.++
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777777777777776666655543
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=2.6e-07 Score=84.28 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=100.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHH-HH
Q 047480 347 TMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISG-LA 425 (719)
Q Consensus 347 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~~ 425 (719)
.+......+...|++++|...+++.+... +.+...+..+...|.+.|++++|...|+++....|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 45566778889999999999998433332 3567888999999999999999999999988752344333322211 12
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHHHhcCCHHHH
Q 047480 426 QHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLLARDGRLDEA 503 (719)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~eA 503 (719)
..+...+|+..|++..+. .|+ ...+..+...+...|++++|...|+++++....+ +...+..+..+|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222333456666666653 443 3455566666666666666666666666432111 133555566666666666666
Q ss_pred HHHHHh
Q 047480 504 YGLIQS 509 (719)
Q Consensus 504 ~~~~~~ 509 (719)
...+++
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=5.7e-06 Score=88.65 Aligned_cols=366 Identities=9% Similarity=-0.048 Sum_probs=170.1
Q ss_pred hHHHHHHHhhccCCCCChHHHHHHhccCCC--CCccHHHHHHHHHHcCCC-chHHHHHHHHhHh-CCCCCCCcccHHHHH
Q 047480 41 SSSQLISFFALSGCKNGLFRSRILFSQIDN--PNIFIWNTLMRGYSRSDS-PQEALVLYTSMLS-KGIVSPNNFTFPFVL 116 (719)
Q Consensus 41 ~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~-~g~~~p~~~~~~~ll 116 (719)
+|..-+..|-. |+.+.|+.+|++... |++..|...+.-..+.+. .+....+|+.... .|..+++...|...+
T Consensus 17 vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 33444455554 677777777776543 677777777666655542 3445566666554 242213444555555
Q ss_pred HHHhc----cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcc
Q 047480 117 NSCAR----LSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPC 192 (719)
Q Consensus 117 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 192 (719)
.-+.. .++.+.++.+++.+++.....-..+|......-.. .....+.++. .... +.+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~---------------~~~~--~~y~ 154 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIV---------------GDTL--PIFQ 154 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHH---------------HHHH--HHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHH---------------HHHh--HHHH
Confidence 44332 34566677777777753211111122211111000 1111111111 1100 1122
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CC-----cHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHH
Q 047480 193 PALWLFRKMQDSCIQPDAFTFVAMFSACTEL--ND-----PRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNM 265 (719)
Q Consensus 193 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--~~-----~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 265 (719)
.|..+++.+...--..+...|...+.--... +- .+.+..+++.++.. .+.+..+|...+..+.+.|+.+.
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 2232332222100000112222222221111 00 12344566665554 34445556666666666666666
Q ss_pred HHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHH-HHHHhhcC----------C--CChhhHHHHHHHHHhcCChhHHHH
Q 047480 266 AERVFSTM-GMSKSTAAWSSMISGYTREGKIERA-RQLFDQMD----------Q--RDLVSWTAMISGYSQVGGFSQALE 331 (719)
Q Consensus 266 a~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~m~----------~--~~~~~~~~li~~~~~~g~~~~A~~ 331 (719)
|..++++. +.+.+...+. .|+...+.++. ..+.+... . .....|...+....+.++.+.|..
T Consensus 232 ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~ 307 (493)
T 2uy1_A 232 AKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK 307 (493)
T ss_dssp HHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666665 2222222222 12221111111 11111110 0 012346666666666677788888
Q ss_pred HHHHhHhcCCCCChhHHHHHHHHHHc-cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 047480 332 LFGKMESLGIHPDEVTMVAVLRACVG-LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN 410 (719)
Q Consensus 332 ~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 410 (719)
+|.+. ... ..+...|......-.. .++.+.|+.+++..+...+ .++..+...++...+.|+.+.|..+|+.+.
T Consensus 308 i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 308 LFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 88777 211 1222333221111111 2357778888874444332 334455566777777788888888888773
Q ss_pred CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047480 411 LKTVSLFNSIISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
.....|...+.--...|+.+.+..+++++..
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456677777666666777777776666653
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=3.2e-06 Score=83.80 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHhHhcCCCCChh-HHHHHHHHHHccC--ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc--
Q 047480 324 GGFSQALELFGKMESLGIHPDEV-TMVAVLRACVGLG--ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMY----AKC-- 394 (719)
Q Consensus 324 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~-- 394 (719)
...++|++++.+++.. .|+.. .|+.--.++...+ .++++...+...+.. . +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-N-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-C-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-C-cccHHHHHHHHHHHHHHHHhccc
Confidence 3345777777777764 44433 3444444455555 566666666632222 2 22333333322222 223
Q ss_pred -CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 047480 395 -GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGE--TSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQ 470 (719)
Q Consensus 395 -g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (719)
++++++.+.++.+.+. ++|..+|+--.-.+.+.|.++ ++++.++++.+.. |
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~----------------------- 177 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--L----------------------- 177 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--T-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--C-----------------------
Confidence 4455555555444433 344444544444444444444 5555555554432 1
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGR------LDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA-KIGEIAGQK 541 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 541 (719)
-+-..|+.-..++.+.|+ ++++++.++++ ...| |...|+-+...+...|+. +.....+++
T Consensus 178 -----------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 178 -----------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp -----------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred -----------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 123333333333333333 45555555443 2222 455555555555555542 223345555
Q ss_pred HhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 542 LLDLE---PDHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 542 ~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+.+++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55544 55555666666666666666666666666554
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.9e-07 Score=79.75 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=90.2
Q ss_pred CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 480 IKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 480 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4566 567778899999999999999999986 3444 678899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 047480 557 SNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 557 ~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 114
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.60 E-value=7.5e-07 Score=87.13 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-CCC-hhHHH
Q 047480 278 STAAWSSMISGYTREGKIERARQLFDQMDQ--R-D---LVSWTAMISGYSQVGGFSQALELFGKMESLGI-HPD-EVTMV 349 (719)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 349 (719)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+...|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666666666777777776666653 2 2 33455566666666666666666666665421 111 22333
Q ss_pred HHHHHHHc--------cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHH
Q 047480 350 AVLRACVG--------LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSII 421 (719)
Q Consensus 350 ~ll~a~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li 421 (719)
.+..++.. .|++++|...+.+.+...+ .+.....++.......+ .....+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a~~~~~~~~~----------------~~~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP--NHELVDDATQKIRELRA----------------KLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT--TCTTHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc--CchhHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 44444444 5555555555553222221 11111111111000000 0011134455
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcc----------CcHHHHHHHHHHHHH
Q 047480 422 SGLAQHGLGETSIAVFREMELMGLKPD----GVTFVTVLCACSHG----------GLVEEGKQFFESMLN 477 (719)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~ 477 (719)
..|...|++++|+..|++..+. .|+ ...+..+..++... |++++|...|+.+++
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 6666777777777777776653 233 12444555555544 666666666666664
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.3e-07 Score=93.78 Aligned_cols=193 Identities=8% Similarity=-0.060 Sum_probs=130.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 047480 380 NIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLC 457 (719)
Q Consensus 380 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 457 (719)
+...+..+...|.+.|++++|...|++.... +.+...|..+...|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445566777778888888888888776543 457778888888888888888888888888764 454 457777888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQM-EHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGE 536 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (719)
++...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+. .|+.++|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 888889999999888887742 2221 111112222222221111111 2222333344443333 3332 68999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhC
Q 047480 537 IAGQKLLDLEPDHGAHYVLLSNMLAET-YRWEEARQVRKLMDDS 579 (719)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 579 (719)
+.++++++++|++......+...+.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999877777787777776 7899999999988753
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=1.1e-06 Score=82.66 Aligned_cols=121 Identities=10% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
...+...|++++|...|++. +.|+...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|+++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 33444555555555555444 2344455555555555566666665555554 1222 4455666666666666777
Q ss_pred HHHHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 534 IGEIAGQKLLDLEPDHG----------------AHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+|...+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777776666655 677778888888888888888888777643
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=3.9e-06 Score=83.63 Aligned_cols=161 Identities=11% Similarity=-0.022 Sum_probs=119.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-cC----hhHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMG-LKPDGV----TFVTVLCACSHGGLVEEGKQFFESMLNYGIK-PQ----MEHY 487 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~ 487 (719)
...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+++.+.... ++ ...+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334667888899999999999887632 122221 2334566677778999999999998863222 22 2368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chh
Q 047480 488 GCMVDLLARDGRLDEAYGLIQSMP-------YD-AN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAH 552 (719)
Q Consensus 488 ~~li~~~~~~g~~~eA~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 552 (719)
+.+...|...|++++|++.++++- .. +. ..++..+...|...|++++|...+++++++.+.. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888999999999999988887762 11 11 2367788888999999999999999998765432 567
Q ss_pred HHHHHHHHhhcCC-hHHHHHHHHHHHh
Q 047480 553 YVLLSNMLAETYR-WEEARQVRKLMDD 578 (719)
Q Consensus 553 ~~~l~~~~~~~g~-~~~A~~~~~~m~~ 578 (719)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999998888753
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=2e-05 Score=78.07 Aligned_cols=237 Identities=9% Similarity=-0.028 Sum_probs=154.4
Q ss_pred HHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcC--ChhHHHHHHHHhHhcCCCCChhHHHHHHHHH----Hcc-
Q 047480 289 YTREGKIERARQLFDQMDQ--R-DLVSWTAMISGYSQVG--GFSQALELFGKMESLGIHPDEVTMVAVLRAC----VGL- 358 (719)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~- 358 (719)
..+....++|.++++.+.. | +...|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3334445789999998865 3 4456888888888888 9999999999999863 22344455444444 445
Q ss_pred --CChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--HHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHH
Q 047480 359 --GALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID--TALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETS 433 (719)
Q Consensus 359 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~--~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 433 (719)
++++++..++.+.+.. . +.+..+|+--.-.+.+.|.++ ++.+.++++.+. +.|...|+--...+...|+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~-~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~--- 196 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS-D-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL--- 196 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG---
T ss_pred ccCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc---
Confidence 7899999999944443 3 467788888777888889888 999999888764 67888888776666555540
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH-HHHHHHhCC-
Q 047480 434 IAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE-AYGLIQSMP- 511 (719)
Q Consensus 434 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e-A~~~~~~~~- 511 (719)
+ ....+++++++++.++... +-|...|+.+..++.+.|+..+ +.++.++.-
T Consensus 197 -------------~-------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 197 -------------A-------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp -------------C-------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred -------------c-------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 0 0012344555555555322 2235555555555555555333 344555441
Q ss_pred C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCchhHHHHHH
Q 047480 512 Y----DANSVIWRALLAACRLHRNAKIGEIAGQKLLD-LEPDHGAHYVLLSN 558 (719)
Q Consensus 512 ~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 558 (719)
. ..+...+..+...+.+.|+.++|.++++++.+ .+|-....|...++
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 1 23556777777777777888888888888775 67876655554443
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=7.8e-07 Score=77.77 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666778888999999999999886 3344 67788888888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047480 562 ETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.52 E-value=1.1e-06 Score=82.73 Aligned_cols=185 Identities=11% Similarity=0.003 Sum_probs=118.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047480 315 AMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC 394 (719)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 394 (719)
.....+.+.|++++|+..|++.... .|+........ ....... ....+...+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~---~~~~~~~----------------~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT---NVDKNSE----------------ISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH---HSCTTSH----------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh---hhcchhh----------------hhHHHHHHHHHHHHHC
Confidence 3445667788888888888887764 34332211000 0000000 1122234577888889
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc--HHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGL--VEEGKQ 470 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~ 470 (719)
|++++|...|++..+. |.+...|..+...|...|++++|+..|++..+. .|+ ..++..+...+...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999998887654 567788999999999999999999999998884 565 4577777777765554 344555
Q ss_pred HHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047480 471 FFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLA 524 (719)
Q Consensus 471 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~ 524 (719)
.++.... ..|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555432 2222333444566677789999999999886 67788766655544
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=9e-07 Score=84.40 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCChh---cHHH
Q 047480 345 EVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRN-IFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTVS---LFNS 419 (719)
Q Consensus 345 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~~---~~~~ 419 (719)
...+......+...|++++|...+.+.+...+..+. ...+..+...|.+.|++++|...|+++.+. |.+.. .|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677888999999999999955554332222 356778899999999999999999997654 22332 4555
Q ss_pred HHHHHHh------------------CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 420 IISGLAQ------------------HGLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 420 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
+..++.. .|+.++|+..|+++++. .|+.. ....... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555543 57899999999999974 56654 2221110 0 0011111
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA 551 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (719)
......+...|.+.|++++|+..++++ ...|+. ..+..+..++...|+.++|...++++....|++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112234678899999999999999887 233432 46778888899999999999999999998888654
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.50 E-value=4e-06 Score=83.18 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHH-HHHHHH
Q 047480 346 VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFN-SIISGL 424 (719)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~-~li~~~ 424 (719)
..+..+...+...|++++|.+.+++.+.. . +.+...+..+...|.+.|++++|...|+++....|+...+. .....+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL-S-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh-C-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 34444555555666666666666632222 2 23455566667777777777777777777665423333222 222235
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCc-cChhHHHHHHHHHHhcCCHHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIK-PQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~e 502 (719)
.+.++.++|++.|++..+. .|+ ...+..+...+...|++++|...|+.+++.... .+...+..++.+|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 5566666666666666653 343 345666666666666777776666666642211 114455566666666666666
Q ss_pred HHHHHHh
Q 047480 503 AYGLIQS 509 (719)
Q Consensus 503 A~~~~~~ 509 (719)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=1.8e-06 Score=77.46 Aligned_cols=126 Identities=11% Similarity=0.025 Sum_probs=90.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555666667777777776666432 224566667777777777777777777665 2223 56677888888888
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHH--HHHHhhcCChHHHHHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLL--SNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 577 (719)
.|++++|...+++++++.|+++..+..+ +..+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999988777444 444788899999999888765
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=1.9e-06 Score=72.73 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PY-DANSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~ 527 (719)
..+..+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++ .. +.+..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 345555555666666666666666665422 223555666666777777777777776665 12 235667777777888
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETY 564 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (719)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888988888888887776554
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=2.7e-06 Score=84.83 Aligned_cols=164 Identities=11% Similarity=-0.050 Sum_probs=118.3
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---ccC--h
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-G----VTFVTVLCACSHGGLVEEGKQFFESMLNYGI---KPQ--M 484 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~---~p~--~ 484 (719)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888888888888888776432211 1 1233445556778899999999888874221 111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------C
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSMP----YDAN-----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD------H 549 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 549 (719)
..|+.+...|...|++++|.+.++++- ..|+ ..++..+...|...|++++|...+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478888899999999999988887751 1222 247788888899999999999999999876432 1
Q ss_pred chhHHHHHHHHhhcCChHHH-HHHHHHHHh
Q 047480 550 GAHYVLLSNMLAETYRWEEA-RQVRKLMDD 578 (719)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 578 (719)
+.+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788999999999999999 777777653
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.46 E-value=5.4e-06 Score=77.92 Aligned_cols=144 Identities=8% Similarity=-0.093 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
..+...|...|++++|...|++... ++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3445556666666666666666654 555666666666666666666666666665532 2233455555555566666
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (719)
+++|.+.|+...+.. |+..... +...| +...| ....|..+...+...|++++|...+++++
T Consensus 87 ~~~A~~~~~~al~~~--~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL--RGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTT--TTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666666555321 1100000 00000 01222 23567777788889999999999999999
Q ss_pred ccCCCC
Q 047480 544 DLEPDH 549 (719)
Q Consensus 544 ~~~p~~ 549 (719)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999975
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=2.2e-06 Score=72.97 Aligned_cols=115 Identities=12% Similarity=-0.012 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+...|++++|...|+...... +.+...+..+...+...|++++|.+.+++. ...| +...|..+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 45555555666666666666666666422 223556666677777777777777777665 2223 45677777778888
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (719)
.|++++|...+++++++.|+++..+..++.++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999998888888899888888775
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=1.5e-06 Score=88.49 Aligned_cols=94 Identities=14% Similarity=-0.013 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888899999999999888876 3344 67788888889999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 047480 562 ETYRWEEA-RQVRKLMD 577 (719)
Q Consensus 562 ~~g~~~~A-~~~~~~m~ 577 (719)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666654
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=2.1e-06 Score=73.50 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...|...|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|++...+..++.++.
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444444444555555555544443 1122 45566666677777788888888888888888888888888888887
Q ss_pred hcCC
Q 047480 562 ETYR 565 (719)
Q Consensus 562 ~~g~ 565 (719)
..|+
T Consensus 130 ~~~~ 133 (133)
T 2lni_A 130 AQYN 133 (133)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 6654
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=3.3e-07 Score=88.67 Aligned_cols=184 Identities=9% Similarity=-0.097 Sum_probs=130.3
Q ss_pred hcCChHHHHHHHhcCCCC-CCChhcHHHH-------HHHHHhCCChhHHHHHHHHHHHcCCCCCHH--------------
Q 047480 393 KCGSIDTALSVFYKIPKN-LKTVSLFNSI-------ISGLAQHGLGETSIAVFREMELMGLKPDGV-------------- 450 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~-~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 450 (719)
..++...|.+.|.++... +.....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467777788887776654 4556677777 4555555555566555554443 344331
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HH
Q 047480 451 --------TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANS----VI 518 (719)
Q Consensus 451 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~----~~ 518 (719)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223455677889999999999887743 354335556667888999999999999877444433 35
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLE--PD-HGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+..+..++...|+.++|+..++++.... |. .+.....++.++.+.|+.++|...++++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6777778999999999999999997543 54 44578889999999999999999999998743
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=9.6e-07 Score=80.49 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=84.2
Q ss_pred hccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hH
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAA-CRLHRNA--KI 534 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 534 (719)
...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+... +...|+. ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34566666666666666432 234566677777777777777777777765 2223 55566666666 6677887 88
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 535 GEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|...++++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888999999998888887654
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=2.4e-06 Score=75.31 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=87.2
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047480 445 LKPDGV-TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRA 521 (719)
Q Consensus 445 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 521 (719)
+.|+.. .+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|.+.|++++|++.|++. ...| +...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 456553 67777788899999999999999998643 234788889999999999999999999887 3444 5678888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+..++...|++++|+..+++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88999999999999999999999999753
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=2.4e-05 Score=77.78 Aligned_cols=159 Identities=13% Similarity=0.001 Sum_probs=119.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCC---CCh---h-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCH----HHHHH
Q 047480 387 VIDMYAKCGSIDTALSVFYKIPKNL---KTV---S-LFNSIISGLAQHGLGETSIAVFREMELMGLK-PDG----VTFVT 454 (719)
Q Consensus 387 li~~y~k~g~~~~A~~~~~~~~~~~---~~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 454 (719)
.+..+...|++++|...+++..... ++. . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999998865531 221 1 2334666677788999999999999974322 232 26888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHH----c-CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047480 455 VLCACSHGGLVEEGKQFFESMLN----Y-GIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-------PYDAN-SVIWR 520 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~ 520 (719)
+...|...|++++|..+|+++.+ . +..+. ...+..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999883 1 22222 347888999999999999999998875 11222 56788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 047480 521 ALLAACRLHRN-AKIGEIAGQKLLDL 545 (719)
Q Consensus 521 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 545 (719)
.+...+...|+ .++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999995 59999999988753
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.37 E-value=1.5e-05 Score=74.92 Aligned_cols=163 Identities=9% Similarity=0.037 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccC----ChHHHHHHHHHHHHHcCCCCChhH
Q 047480 308 RDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLG----ALDFGKRLHQQYIENVVFGRNIFL 383 (719)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 383 (719)
.+..++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|...+. ...+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~-~A~~~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE-KAVEA---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH-HHHHT---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH-HHHHC---CCHHH
Confidence 455666666666777777777777777776654 34445555555555 4 6777777777 34333 24555
Q ss_pred HHHHHHHHHh----cCChHHHHHHHhcCCCCCCC---hhcHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHH
Q 047480 384 TTAVIDMYAK----CGSIDTALSVFYKIPKNLKT---VSLFNSIISGLAQ----HGLGETSIAVFREMELMGLKPDGVTF 452 (719)
Q Consensus 384 ~~~li~~y~k----~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 452 (719)
+..|..+|.. .+++++|...|++..+..+. +.++..|...|.. .++.++|+..|++..+. .++...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHH
Confidence 6667777766 67788888888877664232 5677777777777 67788888888888775 2344455
Q ss_pred HHHHHHHhcc-C-----cHHHHHHHHHHHHHcCC
Q 047480 453 VTVLCACSHG-G-----LVEEGKQFFESMLNYGI 480 (719)
Q Consensus 453 ~~ll~a~~~~-g-----~~~~a~~~~~~m~~~g~ 480 (719)
..|...|... | +.++|..+|+...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5555555432 2 78888888888776663
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.1e-06 Score=73.06 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777888888888888888776 3334 56788888888889999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047480 562 ETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=9.8e-07 Score=85.38 Aligned_cols=136 Identities=10% Similarity=-0.078 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC--hhHHHHHHHHHH
Q 047480 418 NSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ--MEHYGCMVDLLA 495 (719)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~ 495 (719)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34556666777777777777766653 3544444444446777788888888877554321 111 235666777888
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 496 RDGRLDEAYGLIQSMP---YDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
+.|++++|++.|++.. ..|. ...+.....+++..|+.++|...+++++..+|+ +.++..|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888762 2143 235566666788888999999999999988887 65555553
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=3.3e-06 Score=69.63 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD--HGAHYVLLSNM 559 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 559 (719)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777778888888888887765 222 35667778888888889999999999999999998 88889999999
Q ss_pred Hhhc-CChHHHHHHHHHHHhCCC
Q 047480 560 LAET-YRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 560 ~~~~-g~~~~A~~~~~~m~~~~~ 581 (719)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998887543
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=2.1e-06 Score=72.54 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 3444 6778888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 047480 564 YRWEEARQVRKLMDDSG 580 (719)
Q Consensus 564 g~~~~A~~~~~~m~~~~ 580 (719)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.9e-06 Score=75.94 Aligned_cols=107 Identities=9% Similarity=-0.032 Sum_probs=77.6
Q ss_pred CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 047480 446 KPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRAL 522 (719)
Q Consensus 446 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 522 (719)
.|+. ..+..+...+...|++++|...|+.++... +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4443 355566667777788888888887777532 234667777778888888888888888776 2334 55677777
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
..++...|+.++|...+++++++.|+++...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 7788888999999999999999888876553
No 140
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.28 E-value=1.4e-06 Score=87.48 Aligned_cols=195 Identities=10% Similarity=-0.039 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHH
Q 047480 358 LGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVF 437 (719)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 437 (719)
.|++++|.+++. ...+..- .. .+...++++.|...|.+ ....|...|++++|.+.|
T Consensus 4 ~~~~~eA~~~~~-~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIA-KAEKYLK-TS---------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHH-HHHHHHC-CC---------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHH-HHHHHcc-cc---------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHH
Confidence 456677887777 4433211 11 01114677777776654 456788999999999999
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CC-ccC--hhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 438 REMELM----GLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNY--GI-KPQ--MEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 438 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--g~-~p~--~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
.+..+. +-.+. ..+|..+...|...|++++|...|++.++. .. .+. ..++..+..+|.+ |++++|++.+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 987753 21111 247888888999999999999999988732 11 122 4678888999988 9999999999
Q ss_pred HhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHH
Q 047480 508 QSMP-Y---DAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG------AHYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 508 ~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
++.- . ..+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8761 1 111 35678888889999999999999999999876543 26677888888999999999999
Q ss_pred HHHH
Q 047480 574 KLMD 577 (719)
Q Consensus 574 ~~m~ 577 (719)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9987
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=8.6e-06 Score=75.74 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCC--CC----chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEP--DH----GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..+...+...|++++|...+++++++.+ ++ ...+..++.+|...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444445555666666666655554321 11 12356777778888888888777776654
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=6.2e-06 Score=71.16 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=81.7
Q ss_pred cChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 482 PQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777788888888888888888775 2333 567788888888899999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHhC
Q 047480 560 LAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~~ 579 (719)
|...|++++|...++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=4.4e-06 Score=74.94 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455555555666666666655554 2223 44555556666666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047480 562 ETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~ 579 (719)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=7.3e-06 Score=74.51 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=97.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH-HHhcCCH--H
Q 047480 425 AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL-LARDGRL--D 501 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~ 501 (719)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ |.+.|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888998888887752 3345688888888899999999999999988532 2346677788888 7788998 9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHY 553 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (719)
+|...++++ ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999886 3344 567788888889999999999999999999999886544
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=1.7e-05 Score=65.96 Aligned_cols=107 Identities=13% Similarity=0.039 Sum_probs=58.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH 529 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 529 (719)
+..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444455555555555555554321 123445555555555556666665555554 1222 345566666666666
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
|++++|...++++++..|+++..+..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777666555555444
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.23 E-value=1.4e-05 Score=79.53 Aligned_cols=162 Identities=12% Similarity=-0.019 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh------hcHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HH
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV------SLFNSIISGLAQHGLGETSIAVFREMELMGL---KPD--GV 450 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 450 (719)
.+...+..|...|++++|.+.+.+..+. +... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445677788899999999888754432 1111 2234455667888999999999999875321 122 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc-CCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQ-----MEHYGCMVDLLARDGRLDEAYGLIQSMP-------YDA-NS 516 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~~-------~~p-~~ 516 (719)
+++.+...|...|++++|..+|+++.+. ...|+ ...+..+...|.+.|++++|++.+++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988721 11222 2578889999999999999999988751 111 15
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhc
Q 047480 517 VIWRALLAACRLHRNAKIG-EIAGQKLLD 544 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 544 (719)
.+|..+...+...|+.++| ...++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 777888765
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=6.9e-06 Score=76.39 Aligned_cols=151 Identities=11% Similarity=0.001 Sum_probs=98.4
Q ss_pred hcCChHHHHH---HHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCc
Q 047480 393 KCGSIDTALS---VFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELM----GLKPD-GVTFVTVLCACSHGGL 464 (719)
Q Consensus 393 k~g~~~~A~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~ 464 (719)
..|++++|.+ .+..-+. .....++.+...|...|++++|+..+++..+. +..|. ..++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4577777777 4433222 34567777777888888888888888777651 22222 2366677777888888
Q ss_pred HHHHHHHHHHHHHc----CCcc--ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcC
Q 047480 465 VEEGKQFFESMLNY----GIKP--QMEHYGCMVDLLARDGRLDEAYGLIQSMP----YDANS----VIWRALLAACRLHR 530 (719)
Q Consensus 465 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~----~~~~~ll~~~~~~g 530 (719)
+++|...+++..+. +-.| ....+..+...+...|++++|.+.+++.- ..++. .++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888877632 2111 13456777788888888888888877651 11222 23566666788888
Q ss_pred ChhHHHHHHHHHhcc
Q 047480 531 NAKIGEIAGQKLLDL 545 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~ 545 (719)
++++|...+++++++
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888887764
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=8.6e-06 Score=67.78 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 2334 6778888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhCC
Q 047480 561 AETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~~ 580 (719)
...|++++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999988653
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=3.6e-06 Score=71.83 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch-------hHHH
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGA-------HYVL 555 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 555 (719)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566788888888888888888876 3344 5677888888899999999999999999998887643 5778
Q ss_pred HHHHHhhcCChHHHHHHHHHHHh
Q 047480 556 LSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 556 l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999998765
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=9.8e-06 Score=68.19 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 223 367788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 047480 562 ETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~~~ 580 (719)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988653
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=8.2e-05 Score=74.46 Aligned_cols=224 Identities=10% Similarity=0.002 Sum_probs=117.8
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCCCCCh-hHHHHHHHHHHccC-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-
Q 047480 318 SGYSQVGGFSQALELFGKMESLGIHPDE-VTMVAVLRACVGLG-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKC- 394 (719)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~- 394 (719)
......+..++|++++.+++.. .|+. ..|+.--.++...+ .++++..++. .+.... +.+..+|+.-...+.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~-~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMN-EFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 3344455567788888888775 3433 34454444555555 4666776666 333332 34555555555555554
Q ss_pred C-ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 395 G-SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGE--------TSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 395 g-~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
+ +++++.+.++++.+. ++|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 5 566666666665554 455556655554444444444 5555555555432 1133344444444444432
Q ss_pred -------HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----
Q 047480 465 -------VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNA----- 532 (719)
Q Consensus 465 -------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~----- 532 (719)
++++++++++++... | -|...|+-+-..+.+.|+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~--P-------------------------------~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI--P-------------------------------HNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC--T-------------------------------TCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred cccchHHHHHHHHHHHHHHHhC--C-------------------------------CCHHHHHHHHHHHHhcCCCccccc
Confidence 344444444444211 1 1444454444444333332
Q ss_pred ---------------hHHHHHHHHHhcc------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 533 ---------------KIGEIAGQKLLDL------EPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 533 ---------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
......+..+... ++.++.+...|+++|...|+.++|.++++.+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1112222222222 2456677889999999999999999999998743
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00077 Score=67.43 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcC-ChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHc
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVG-GFSQALELFGKMESLGIHPDEVTMVAVLRACVG 357 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (719)
++.+-....+.+..++|.++++.+.. .+...|+.--..+...| .+++++++++.+.... +-+..+|+.-..++..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333444455566789999998875 45567888877888888 5999999999999864 3355667666666666
Q ss_pred c-C-ChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--------HHHHHHhcCCCC-CCChhcHHHHHHHHHh
Q 047480 358 L-G-ALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSID--------TALSVFYKIPKN-LKTVSLFNSIISGLAQ 426 (719)
Q Consensus 358 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~--------~A~~~~~~~~~~-~~~~~~~~~li~~~~~ 426 (719)
. + +.+++.+++. .+.+.. +.+..+|+--.-.+.+.|..+ ++.+.++++.+. +.|...|+-....+.+
T Consensus 136 l~~~~~~~EL~~~~-k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIH-GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHH-HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 5 6 7888998888 444433 456777776665566666665 888888877654 6788899999888888
Q ss_pred CCC-------hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 047480 427 HGL-------GETSIAVFREMELMGLKPDG-VTFVTVLCACSHGG 463 (719)
Q Consensus 427 ~g~-------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 463 (719)
.++ ++++++.+++++.. .|+. ..|+-+-..+.+.|
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 876 68899999998874 5544 45655444444443
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=8.8e-06 Score=69.53 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3667888889999999999999999886 4444 6778888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 047480 561 AETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~ 579 (719)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=8.4e-06 Score=71.08 Aligned_cols=106 Identities=9% Similarity=-0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+...|++++|...|+.++... +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44445555666666777777766666432 223556666677777777777777777665 2233 44566667777778
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
.|++++|...+++++++.|+++.......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88888888888888888887766554433
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=1.2e-05 Score=74.77 Aligned_cols=172 Identities=8% Similarity=-0.073 Sum_probs=103.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVE 466 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (719)
+......|++++|.+.|+.-... ......|..+...+...|++++|+..|++..+. .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444556666666666544331 223446777777778888888888888887763 2222111000 000
Q ss_pred HHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 467 EGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 467 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
.-. . ......+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++
T Consensus 81 ~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 81 DKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000 0 001356677778888888888888888776 2333 567788888889999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHH-HHHHHHHhC
Q 047480 545 LEPDHGAHYVLLSNMLAETYRWEEAR-QVRKLMDDS 579 (719)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 579 (719)
++|+++.++..++.++...|+.+++. ..++.|-.+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998888887776 455555443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.4e-05 Score=69.77 Aligned_cols=94 Identities=16% Similarity=0.043 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 047480 485 EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNM 559 (719)
Q Consensus 485 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (719)
..+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33444444444555555555544443 23333 33444444445555555555555555555555555555555555
Q ss_pred HhhcCChHHHHHHHHHHHh
Q 047480 560 LAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 560 ~~~~g~~~~A~~~~~~m~~ 578 (719)
|...|++++|...+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.8e-05 Score=67.83 Aligned_cols=109 Identities=11% Similarity=-0.046 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLA 524 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 524 (719)
.+..+...+...|++++|...|+...+. .|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3333444444444444444444444431 222 344555555666666666666666554 2223 4556666777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
.+...|++++|...++++++++|+++..+..+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777888888888888888888887766666665543
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2e-05 Score=66.82 Aligned_cols=109 Identities=8% Similarity=-0.124 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047480 451 TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 528 (719)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555566666666666555422 223555666666666666666666666654 2233 45566666677777
Q ss_pred cCChhHHHHHHHHHhccC------CCCchhHHHHHHHH
Q 047480 529 HRNAKIGEIAGQKLLDLE------PDHGAHYVLLSNML 560 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 560 (719)
.|++++|...++++++++ |+++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 777777777777777777 66665555555443
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=8.4e-06 Score=71.13 Aligned_cols=63 Identities=19% Similarity=0.029 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCchhH----HHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLDL-------EPDHGAHY----VLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 99999999 99999999999999999999998763
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.12 E-value=2.4e-05 Score=69.88 Aligned_cols=126 Identities=6% Similarity=-0.068 Sum_probs=66.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLA 495 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 495 (719)
.|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555555666666666666555431 2233455555555566666666666666655422 223455555666666
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChhHHHHHHHHHh
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRAL--LAACRLHRNAKIGEIAGQKLL 543 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~ 543 (719)
+.|++++|.+.++++ ...| +...|..+ ...+...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666666666554 1222 33333222 222455566666666666554
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=2.1e-05 Score=70.48 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACR 527 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 527 (719)
..+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555566666677777777777666432 224666777777777778888887777765 2334 5677888888899
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
..|++++|...++++++++|+++..+...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999887665444
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.11 E-value=1.4e-05 Score=67.90 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567788889999999999999999987 2333 6778888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhCC
Q 047480 561 AETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~~ 580 (719)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988653
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=2.1e-05 Score=77.64 Aligned_cols=93 Identities=9% Similarity=-0.038 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 047480 247 MLLKTAVINMYAKCGLMNMAERVFSTM-G-MSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYS 321 (719)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 321 (719)
...+..+...|.+.|++++|...+++. . .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555666666666666666555 2 233566777777778888888888888777654 34556777777788
Q ss_pred hcCChhHHHHHHHHhHhc
Q 047480 322 QVGGFSQALELFGKMESL 339 (719)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~ 339 (719)
..|++++|+..|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777653
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=3.6e-05 Score=82.25 Aligned_cols=114 Identities=7% Similarity=-0.042 Sum_probs=56.4
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH
Q 047480 424 LAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 502 (719)
+.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44455666666666655553 333 3455555555666666666666666655432 1224555555666666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 047480 503 AYGLIQSM-PYDA-NSVIWRALLAA--CRLHRNAKIGEIAGQ 540 (719)
Q Consensus 503 A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 540 (719)
|++.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665554 1222 22233333333 455566666666666
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=2.1e-05 Score=70.24 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567777788888999999999999999999999999999999999999999999999888764
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.07 E-value=4.1e-06 Score=85.18 Aligned_cols=147 Identities=7% Similarity=-0.018 Sum_probs=109.4
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHH
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD----------------GVTFVTVLC 457 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~ 457 (719)
+++++|...|+..... +.+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444332 234567888888888899999999999888874 344 368888888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 535 (719)
++.+.|++++|...++++++.. +.+...|..+..+|...|++++|++.|+++ ...| +..++..+...+...|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998643 234778888899999999999999999886 3444 566788888888888888888
Q ss_pred H-HHHHHHhc
Q 047480 536 E-IAGQKLLD 544 (719)
Q Consensus 536 ~-~~~~~~~~ 544 (719)
. ..++++++
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4 46666653
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00036 Score=69.50 Aligned_cols=176 Identities=9% Similarity=-0.024 Sum_probs=83.2
Q ss_pred CChhHHHHHHHHHHhcC--ChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCG--SIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL-GETSIAVFREMELMGLKPDGVTFVT 454 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ 454 (719)
.+..+|+.-.-.+.+.| .++++...++.+.+. +.|..+|+--.-.+...|. ++++++.++++++.. +-|...|+.
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 34445554444444545 255666666555543 4556666665555555565 366666666666542 123334433
Q ss_pred HHHHHhcc--------------CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc-----------CCHHHHHHHHHh
Q 047480 455 VLCACSHG--------------GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD-----------GRLDEAYGLIQS 509 (719)
Q Consensus 455 ll~a~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~eA~~~~~~ 509 (719)
....+.+. +.++++.+++...+... +-|...|+.+-..+.+. +.++++++.+++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 33332222 33555666666555321 22244454444444433 334555555555
Q ss_pred C-CCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 047480 510 M-PYDANSVIWRALLAAC-----RLHRNAKIGEIAGQKLLDLEPDHGAHYVLLS 557 (719)
Q Consensus 510 ~-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (719)
+ ...||. .|..+-.+. ...+..++....+.++.+++|...+.|..+.
T Consensus 264 lle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 264 LQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4 233443 333221111 1234445555556666666665444444433
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.0004 Score=69.18 Aligned_cols=181 Identities=11% Similarity=0.029 Sum_probs=132.8
Q ss_pred hHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 047480 397 IDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL--GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL-VEEGKQFF 472 (719)
Q Consensus 397 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 472 (719)
++++...++.+... +++..+|+--...+...|+ +++++++++++.+.. +-|...|+.-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45677777766544 6788899988888888884 899999999999863 3355677766666777787 69999999
Q ss_pred HHHHHcCCccChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 047480 473 ESMLNYGIKPQMEHYGCMVDLLARD--------------GRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH------- 529 (719)
Q Consensus 473 ~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 529 (719)
..+++.. +-+...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 9999654 34567777776666655 4588899988876 3344 778888666555544
Q ss_pred ----CChhHHHHHHHHHhccCCCCchhHHHHHHH---HhhcCChHHHHHHHHHHHhC
Q 047480 530 ----RNAKIGEIAGQKLLDLEPDHGAHYVLLSNM---LAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 530 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~ 579 (719)
+.++++++.++++++++|++.-.+..++.. ....|..++....+.++.+-
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 457899999999999999985544444332 23467788888888888763
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=1.4e-05 Score=67.94 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSM-PYDANS----VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH---GAHYVLLSNML 560 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 560 (719)
.+...+.+.|++++|.+.+++. ...|+. ..|..+...+...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777776665 122322 355566666777777777877777777777777 56677777888
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 047480 561 AETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 561 ~~~g~~~~A~~~~~~m~~~ 579 (719)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887777654
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=3.2e-05 Score=66.59 Aligned_cols=99 Identities=8% Similarity=-0.100 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047480 449 GVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAAC 526 (719)
Q Consensus 449 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 526 (719)
...+..+...+...|++++|...|+..+... +.+...+..+..+|...|++++|...+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555555555555555555555555322 122455555666666666666666666554 2223 445666666667
Q ss_pred HhcCChhHHHHHHHHHhccCCC
Q 047480 527 RLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
...|++++|...+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777776665
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=3.2e-05 Score=82.21 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=98.9
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHH
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 492 (719)
....|..+...|.+.|++++|+..|++.++. .|+...+ . -+... ... ......|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHH----HHHHHHHHHHHH
Confidence 3445666666777777777777777776652 2221110 0 00000 000 011467778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (719)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998886 3334 66788888899999999999999999999999999999999999999999999876
Q ss_pred H-HHHHHHh
Q 047480 571 Q-VRKLMDD 578 (719)
Q Consensus 571 ~-~~~~m~~ 578 (719)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.9e-05 Score=79.08 Aligned_cols=189 Identities=6% Similarity=-0.115 Sum_probs=127.2
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC---C---------------hhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHH
Q 047480 390 MYAKCGSIDTALSVFYKIPKNLK---T---------------VSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGV 450 (719)
Q Consensus 390 ~y~k~g~~~~A~~~~~~~~~~~~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ 450 (719)
.+.+.|++++|.+.|..+.+..+ + ..++..+...|...|++++|.+++.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556667777766665433201 1 113667788888889999998888877642 1122221
Q ss_pred ----HHHHHHHHHhccCcHHHHHHHHHHHHH----cCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC
Q 047480 451 ----TFVTVLCACSHGGLVEEGKQFFESMLN----YGIKPQ-MEHYGCMVDLLARDGRLDEAYGLIQSM-----P--YDA 514 (719)
Q Consensus 451 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-----~--~~p 514 (719)
..+.+-..+...|+.+++..+++.... .+..+. ...+..|...|...|++++|..++++. . .+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 223333344567889999998887762 222232 457778899999999999999988765 1 122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CC----chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 515 N-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEP---DH----GAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
. ..++..+...|...|++++|...+++++...| +. ...+..++..+...|++++|...+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 34677777889999999999999998876532 22 24567788888999999999888777653
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=1.5e-05 Score=85.23 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=99.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 047480 456 LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAK 533 (719)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 533 (719)
...+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345677899999999999999642 234788999999999999999999999887 4455 5678899999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHH--HhhcCChHHHHHHHHH
Q 047480 534 IGEIAGQKLLDLEPDHGAHYVLLSNM--LAETYRWEEARQVRKL 575 (719)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 575 (719)
+|+..+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8899999999999883
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.97 E-value=6.2e-05 Score=61.70 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 047480 452 FVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA---NSVIWRALLAACR 527 (719)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~~ 527 (719)
+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3334444445555555555555554321 123445555556666666666666666554 2222 3556666666677
Q ss_pred hc-CChhHHHHHHHHHhccCCCCc
Q 047480 528 LH-RNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 528 ~~-g~~~~a~~~~~~~~~~~p~~~ 550 (719)
.. |+.++|...++++++..|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 77 777777777777777777653
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=5.4e-06 Score=69.50 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 497 DGRLDEAYGLIQSM-PY---DA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 497 ~g~~~eA~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666554 22 23 234566666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 047480 572 VRKLMDDS 579 (719)
Q Consensus 572 ~~~~m~~~ 579 (719)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=1.3e-05 Score=74.54 Aligned_cols=148 Identities=10% Similarity=-0.008 Sum_probs=82.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCCh----------------
Q 047480 352 LRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKN-LKTV---------------- 414 (719)
Q Consensus 352 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-~~~~---------------- 414 (719)
.......+.++.+.+.+. +..... ......+..+...|.+.|++++|...|++.... +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYD-YTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGG-CCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhh-CCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 334445566666666665 222111 123445667788899999999999999986653 2232
Q ss_pred hcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHH
Q 047480 415 SLFNSIISGLAQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDL 493 (719)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 493 (719)
..|..+..+|...|++++|+..+++..+. .| +...+..+..++...|++++|...|+...+.. +.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 55666666677777777777777776664 33 33456666666666666666666666666422 1224455555555
Q ss_pred HHhcCCHHHHH
Q 047480 494 LARDGRLDEAY 504 (719)
Q Consensus 494 ~~~~g~~~eA~ 504 (719)
+.+.++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=2.5e-05 Score=66.24 Aligned_cols=96 Identities=9% Similarity=0.015 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYD-ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH-------GAHYV 554 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 554 (719)
...+..+...+...|++++|...+++. ... .+...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777777888888888887765 222 356677777778888889999999999988887766 77889
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 555 LLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998864
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=4.4e-05 Score=78.50 Aligned_cols=135 Identities=8% Similarity=-0.037 Sum_probs=98.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc-ChhHHHHHHHHH
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP-QMEHYGCMVDLL 494 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 494 (719)
.|..+...+.+.|++++|++.|++.++. .|+.. .... .+...+ ..| +...|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHHHH
Confidence 4566666666777777777777666541 01000 0000 011110 222 356788889999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 047480 495 ARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 495 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4555 567888888899999999999999999999999999999999999999888887754
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=4.5e-05 Score=67.44 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLDLEP------DHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
++..+...+...|++++|...+++++++.+ ..+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555666666666666666654321 1234677888888899999999988887764
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=4.2e-05 Score=64.39 Aligned_cols=94 Identities=14% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 047480 455 VLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNA 532 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 532 (719)
+...+.+.|++++|...|+..++.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+...|+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444555666666666666665421 123555666666666666666666666655 2333 445666666667777777
Q ss_pred hHHHHHHHHHhccCCCC
Q 047480 533 KIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 533 ~~a~~~~~~~~~~~p~~ 549 (719)
++|+..++++++++|++
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 77777777777777764
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.91 E-value=3.3e-05 Score=65.69 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CccC----hhHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESMLNYG--IKPQ----MEHYGC 489 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 489 (719)
|..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.++..++.. ..++ ...|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 444444445555555555555554442 232 2344444445555555555555555444211 0000 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 047480 490 MVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~ 510 (719)
+...|...|++++|++.|++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=0.0001 Score=62.32 Aligned_cols=44 Identities=7% Similarity=-0.201 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML 560 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (719)
..+|..+...+...|++++|...++++++..| ++.....+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 34555555666666777777777777777666 344444444443
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00026 Score=77.00 Aligned_cols=171 Identities=10% Similarity=0.008 Sum_probs=136.4
Q ss_pred CChHHHHHHHhcCCCC-CCChhcHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 047480 395 GSIDTALSVFYKIPKN-LKTVSLFNSIISGLAQHGL----------GETSIAVFREMELMGLKPD-GVTFVTVLCACSHG 462 (719)
Q Consensus 395 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 462 (719)
..-++|.+.++.+... +.+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3445778888777654 5667788887777777776 89999999999985 454 45777777778888
Q ss_pred C--cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 047480 463 G--LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG-RLDEAYGLIQSM-PYDA-NSVIWRALLAACRLH-------- 529 (719)
Q Consensus 463 g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 529 (719)
| +++++.++++++.+.. +-+-..|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 8 7799999999999643 334677888788888888 899999999887 4455 778898887776553
Q ss_pred ------CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 530 ------RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 530 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
+.++++.+.+.++++++|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999988665
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=9.7e-05 Score=78.40 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=88.3
Q ss_pred HhccCcHHHHHHHHHHHHH---cCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047480 459 CSHGGLVEEGKQFFESMLN---YGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM---------PYDANS-VIWRA 521 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 521 (719)
+...|++++|..++++.++ .-+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766651 112222 456777778888888888887777664 233443 46777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCchh---HHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLD-----LEPDHGAH---YVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
|...|...|++++|+.+++++++ +.|+.|.+ ...|..++...|++++|..++..++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888876 56777654 5578888899999999999999998754
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=3e-05 Score=78.84 Aligned_cols=149 Identities=13% Similarity=-0.029 Sum_probs=82.2
Q ss_pred ChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHH
Q 047480 413 TVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVD 492 (719)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 492 (719)
....|..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3445777777788888888998888887763 455432 233444444433221 236777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCChHHH
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNML-AETYRWEEA 569 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 569 (719)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988876 3344 5678888888899999999999999999999999888888888774 455677778
Q ss_pred HHHHHHHHhCC
Q 047480 570 RQVRKLMDDSG 580 (719)
Q Consensus 570 ~~~~~~m~~~~ 580 (719)
...++.|.+..
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888776543
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=0.00013 Score=61.84 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=58.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCccC-h---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 047480 457 CACSHGGLVEEGKQFFESMLNYGIKPQ-M---EHYGCMVDLLARDGRLDEAYGLIQSM-PYDAN----SVIWRALLAACR 527 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~ 527 (719)
..+...|++++|...|+.+.+.. |+ . ..+..+..+|.+.|++++|.+.+++. ...|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445566666666666555321 22 2 35555666666666666666666654 22232 345566666677
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 528 LHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
..|+.++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 77888888888888888888765544433
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.81 E-value=1.8e-05 Score=66.18 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=55.9
Q ss_pred cCcHHHHHHHHHHHHHcCC-cc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 047480 462 GGLVEEGKQFFESMLNYGI-KP-QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 462 ~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
.|++++|...|++.++.+. .| +...+..+..+|.+.|++++|++.+++. ...| +..++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666666664321 12 2455666667777777777777777665 2233 45566666667777778888888
Q ss_pred HHHHHhccCCCCchh
Q 047480 538 AGQKLLDLEPDHGAH 552 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~ 552 (719)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888777776544
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.79 E-value=4e-05 Score=66.83 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM--------PYDANS-VIW----RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAH 552 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (719)
.|..+..++.+.|++++|+..+++. ...|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665554 237754 578 888899999999999999999999999988765
Q ss_pred HH
Q 047480 553 YV 554 (719)
Q Consensus 553 ~~ 554 (719)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.1e-05 Score=66.56 Aligned_cols=93 Identities=13% Similarity=-0.080 Sum_probs=74.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHH
Q 047480 483 QMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH------GAHYV 554 (719)
Q Consensus 483 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 554 (719)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888999988888876 3334 66788888888999999999999999999999998 67788
Q ss_pred HHHHHHhhcCChHHHHHHHHH
Q 047480 555 LLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 555 ~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776654443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=7.1e-05 Score=66.72 Aligned_cols=76 Identities=16% Similarity=0.015 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-hhHHHHHHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG-AHYVLLSNM 559 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 559 (719)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457778888899999999999888876 3344 567888888889999999999999999999999887 444444443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=6e-05 Score=76.57 Aligned_cols=152 Identities=10% Similarity=-0.029 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047480 381 IFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACS 460 (719)
Q Consensus 381 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 460 (719)
...+..+...|.+.|++++|...|++.....++.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45567788889999999999999998655212221 1223344444433221 136777788888
Q ss_pred ccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCChhHHHH
Q 047480 461 HGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANS-VIWRALLAA-CRLHRNAKIGEI 537 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~-~~~~g~~~~a~~ 537 (719)
+.|++++|...++..++.. +.+...|..+..+|...|++++|.+.|++. ...|+. ..+..+... ....+..+.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988643 234778888999999999999999999987 455643 445555444 344567788888
Q ss_pred HHHHHhccCCCCc
Q 047480 538 AGQKLLDLEPDHG 550 (719)
Q Consensus 538 ~~~~~~~~~p~~~ 550 (719)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999998764
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00034 Score=73.72 Aligned_cols=97 Identities=16% Similarity=0.017 Sum_probs=68.0
Q ss_pred hhcHHHHHHHHHhCCChhHHHHHHHHHHHc--CC--CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHH--cCCc-c-C-
Q 047480 414 VSLFNSIISGLAQHGLGETSIAVFREMELM--GL--KPDG-VTFVTVLCACSHGGLVEEGKQFFESMLN--YGIK-P-Q- 483 (719)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~-p-~- 483 (719)
..++..+...|...|++++|..++++.... +. +|.. .++..+...|...|++++|..++++... ..+. | .
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 345677788888888888888888877642 11 2222 3677788888899999999999888762 1121 1 1
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 484 -MEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 484 -~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
...+..+...+...|++++|...+.+.
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345677777888889999888776654
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.67 E-value=0.00014 Score=58.60 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888889999999999999999999999999999999999999999999999999988753
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00021 Score=73.40 Aligned_cols=112 Identities=7% Similarity=-0.055 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDA-NSVIWRALLAACRL 528 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~ 528 (719)
..+..+...+.+.|++++|.+.|++.++. .++.. ..-..+++.+ ..| +..+|..+..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK------LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 34566666677777777777777766631 11100 0011111111 223 45678888888999
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 529 HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998864
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.00013 Score=64.29 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=79.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCccC-hh
Q 047480 416 LFNSIISGLAQHGLGETSIAVFREMELMGL-KPDG----VTFVTVLCACSHGGLVEEGKQFFESMLNY----GIKPQ-ME 485 (719)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ 485 (719)
++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|..++++..+. +-.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666666777777776666554210 0111 25556666677777777777777776521 11111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSMP----YDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLDLE 546 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (719)
.+..+...+...|++++|.+.+++.- ..++ ..++..+...+...|+.++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777777888888777776641 1111 2345666666788888888888888877653
No 196
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.64 E-value=7.2e-06 Score=82.91 Aligned_cols=421 Identities=10% Similarity=0.049 Sum_probs=233.5
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~ 118 (719)
+.+|+.|-.++.. . |++.+|...|=+. .|...|..+|....+.|.+++-+..+.-.++.. -++..=+.++-+
T Consensus 54 p~VWs~LgkAqL~--~-~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQ--K-GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTT--S-SSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHc--c-CchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHH
Confidence 5688888888888 6 7777777665443 455567788888888888888777665544442 344555678888
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHH
Q 047480 119 CARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF 198 (719)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 198 (719)
|++.+++.+-.+++. .||+.-...+.+-+...|.++.|.-+|..+.. |.-|...+++-|++.+|.+.-
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTT
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 888777655443322 46666666677777777888888777766553 334444455555555554332
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHc-CCC-
Q 047480 199 RKMQDSCIQPDAFTFVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTM-GMS- 276 (719)
Q Consensus 199 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~-~~~- 276 (719)
++ .-+..||-.+-.+|...+.+..|...--.++-.. .-...|+..|.+.|.+++...+++.. |.+
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-------deL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-------DELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-------SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-------HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 11 2345566666666666666655543322222110 01123455566666666666666664 432
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHhcCChhHHHHH-------------
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQ-----------RDLVSWTAMISGYSQVGGFSQALEL------------- 332 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~------------- 332 (719)
.....++-|.-.|+|- +.++-.+-++..-. .....|.-++-.|.+-.+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 3455666666666664 23333333322211 2334566677667666666655422
Q ss_pred HHHhHhcCCCCChhH---------------HHHHHHHHHccCChHHHHHHHHH---------HHHHcCCCCChhHHHHHH
Q 047480 333 FGKMESLGIHPDEVT---------------MVAVLRACVGLGALDFGKRLHQQ---------YIENVVFGRNIFLTTAVI 388 (719)
Q Consensus 333 ~~~m~~~g~~p~~~t---------------~~~ll~a~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~li 388 (719)
|++...+ .+|... ++-++.++...=+...+.+++.+ ++....-..+..+..++-
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln 417 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 417 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHH
Confidence 1111110 112122 33344444433344444443331 000111123456777888
Q ss_pred HHHHhcCChHHHHHHHhcCCCC----------CCChhcHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN----------LKTVSLFNS-IISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLC 457 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~----------~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 457 (719)
+.|....+++.-+...+....- ..+..-+.. -...|.+++++++++++.++ .++ |.-.+.
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAie 488 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQ 488 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGT
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHH
Confidence 8888888877665554433320 011222222 23346777788877765432 112 222344
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 047480 458 ACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLI 507 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 507 (719)
..+.+|+.+-+.++++..++.| +.+.|.+.+-.+...=++|-++++-
T Consensus 489 tAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 489 YASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp TTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHHH
Confidence 4667888888888888887644 4455666666666666778777763
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00018 Score=56.41 Aligned_cols=81 Identities=22% Similarity=0.195 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLA 561 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (719)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777788888888888887765 2233 56677888888888999999999999999999998888888888887
Q ss_pred hcC
Q 047480 562 ETY 564 (719)
Q Consensus 562 ~~g 564 (719)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=3.8e-05 Score=66.84 Aligned_cols=85 Identities=8% Similarity=-0.052 Sum_probs=61.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047480 496 RDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRN----------AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET 563 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (719)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555544 2223 34445444444444443 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 047480 564 Y-----------RWEEARQVRKLMDDSG 580 (719)
Q Consensus 564 g-----------~~~~A~~~~~~m~~~~ 580 (719)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998754
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.61 E-value=0.00047 Score=73.16 Aligned_cols=65 Identities=11% Similarity=-0.026 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788888889999999999999999999999999999999999999999999999999998754
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00017 Score=59.91 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=64.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 502 EAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 502 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544 3344 56788888888999999999999999999999999999999999999999999999999988753
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.0012 Score=56.81 Aligned_cols=89 Identities=8% Similarity=-0.081 Sum_probs=48.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHhh---
Q 047480 490 MVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAE--- 562 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 562 (719)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .++.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 334444444444444444443222344444444444444 45566666666666554 345566677777766
Q ss_pred -cCChHHHHHHHHHHHhCC
Q 047480 563 -TYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 563 -~g~~~~A~~~~~~m~~~~ 580 (719)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 667777777777766655
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.00076 Score=53.26 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 513 DANSVIWRALLAACRLHRN---AKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
++|+..|..+..++...++ .++|...++++++++|+++.+...++..+...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467778888777654444 79999999999999999999999999999999999999999999998654
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.0012 Score=69.98 Aligned_cols=121 Identities=14% Similarity=-0.002 Sum_probs=75.5
Q ss_pred HHhCCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHH-----HcCC-ccC-hhHHHH
Q 047480 424 LAQHGLGETSIAVFREMELM---GLKPDG----VTFVTVLCACSHGGLVEEGKQFFESML-----NYGI-KPQ-MEHYGC 489 (719)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~-~p~-~~~~~~ 489 (719)
+...|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++.+ ..|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666542 123332 267777777777777777777777665 1221 122 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhc
Q 047480 490 MVDLLARDGRLDEAYGLIQSM---------PYDANSVI-WRALLAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~---------~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (719)
|..+|...|++++|+.++++. +..|+... .+.+-.++...+.+++|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877765 23343332 33333445567778888887777654
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.28 E-value=0.00071 Score=70.65 Aligned_cols=116 Identities=10% Similarity=0.167 Sum_probs=83.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCc---hh
Q 047480 491 VDLLARDGRLDEAYGLIQSM------PYDAN----SVIWRALLAACRLHRNAKIGEIAGQKLLD-----LEPDHG---AH 552 (719)
Q Consensus 491 i~~~~~~g~~~eA~~~~~~~------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 552 (719)
++-+.+.|++++|++++++. ...|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677777777777654 12222 23677777788888888888888888875 345544 46
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 047480 553 YVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGTLHRFLASKKSHPQTKEIELMLKDMTMKLK 624 (719)
Q Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 624 (719)
+..|+.+|..+|++++|..++++..+.-. ..-...||.+.++...|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998875211 0112369999999988888877775
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00072 Score=55.21 Aligned_cols=66 Identities=9% Similarity=-0.085 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
+...|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888889999999999999999999999999999999999999999999999999998754
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.00025 Score=61.68 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred HhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHcCCccC-hhHHHHHHH
Q 047480 425 AQHGLGETSIAVFREMELMGLKP-DGVTFVTVLCACSHGGLV----------EEGKQFFESMLNYGIKPQ-MEHYGCMVD 492 (719)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~g~~p~-~~~~~~li~ 492 (719)
.+.+++++|++.+++..+. .| +...|..+..++...+++ ++|+..|++.++ +.|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 3445566666666666653 33 334555555555555443 355555555443 2233 344444444
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 493 LLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
+|...|.+ .|+.. .-.|++++|+..|+++++++|++.
T Consensus 89 ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 44444332 22221 012689999999999999999975
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.19 E-value=0.0036 Score=53.75 Aligned_cols=112 Identities=10% Similarity=-0.093 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHh----cCCHHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR----DGRLDEA 503 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~eA 503 (719)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998877 44443 6666777788889999999998765 56777788888887 8899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 047480 504 YGLIQSMPYDANSVIWRALLAACRL----HRNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 547 (719)
.+.|++.-...+...+..|...|.. .+|.++|...++++.+...
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999987444577788888888887 7899999999999988744
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.13 E-value=0.0056 Score=66.51 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHHHHcCCccChhHHHHHHHHHHh
Q 047480 428 GLGETSIAVFREMELMGLKPDGV-TFVTVLCACSHGGL----------VEEGKQFFESMLNYGIKPQMEHYGCMVDLLAR 496 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 496 (719)
...++|++.++++.+. .|+.. .|+.--.++.+.|+ ++++.++++.+.+.. +-+...|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456889999999984 67664 55554455555555 899999999999643 3346778888888889
Q ss_pred cC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCchhHHHHHHHHhhc--------
Q 047480 497 DG--RLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHR-NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAET-------- 563 (719)
Q Consensus 497 ~g--~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 563 (719)
.| ++++++++++++ ...| |..+|+.-.......| ..+++.+.++++++.+|.+..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 779999999998 3334 7889998888888888 899999999999999999999999999988774
Q ss_pred ------CChHHHHHHHHHHHhCCC
Q 047480 564 ------YRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 564 ------g~~~~A~~~~~~m~~~~~ 581 (719)
++++++.+.++.......
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCC
Confidence 567889988888876443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.0016 Score=50.76 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 516 SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577778888999999999999999999999999999999999999999999999999998864
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0019 Score=67.23 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 517 VIWRALLAACRLHRNAKIGEIAGQKLLD-----LEPDHG---AHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
.+++.|..+|...|++++|+.+++++++ +.|++| .++..|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566677777777777777777777765 344444 4688999999999999999999998875
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0044 Score=64.54 Aligned_cols=93 Identities=17% Similarity=0.036 Sum_probs=62.9
Q ss_pred ccCcHHHHHHHHHHHHH---cCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 047480 461 HGGLVEEGKQFFESMLN---YGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM---------PYDANS-VIWRALL 523 (719)
Q Consensus 461 ~~g~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ll 523 (719)
+.|++++|..++++.++ .-+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777776652 112222 456777778888888888887777665 234443 4677788
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----cCCCCchhH
Q 047480 524 AACRLHRNAKIGEIAGQKLLD-----LEPDHGAHY 553 (719)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 553 (719)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 888888888888888888876 567766443
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.87 E-value=0.0027 Score=52.33 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=37.9
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+...
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666666666666666666666653 233 3455555566666666666666666655
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.0095 Score=62.09 Aligned_cols=97 Identities=11% Similarity=-0.053 Sum_probs=58.1
Q ss_pred HhccCcHHHHHHHHHHHHHc---CCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047480 459 CSHGGLVEEGKQFFESMLNY---GIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQSM---------PYDANS-VIWRA 521 (719)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 521 (719)
+...|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44455666666666655521 11222 345666666666677777776666554 233433 35667
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCchhHHH
Q 047480 522 LLAACRLHRNAKIGEIAGQKLLD-----LEPDHGAHYVL 555 (719)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 555 (719)
|...|...|++++|+.+++++++ +.|++|.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77777778888888888777765 56777655443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.013 Score=58.51 Aligned_cols=66 Identities=18% Similarity=0.069 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 514 ANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.++.+|..+.-.+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 35666666665566668888888888888888864 5667778888888888888888887776644
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.029 Score=56.05 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=95.4
Q ss_pred CChhcHHHHHHHHH--hCC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc----cC----cHHHHHHHHHHHHH
Q 047480 412 KTVSLFNSIISGLA--QHG---LGETSIAVFREMELMGLKPDG-VTFVTVLCACSH----GG----LVEEGKQFFESMLN 477 (719)
Q Consensus 412 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~g----~~~~a~~~~~~m~~ 477 (719)
.+...|...+.+.. ..+ ...+|..+|++.++. .|+- ..+..+..++.. .+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 56777887776643 333 347899999999884 6764 344443333321 10 11111222222221
Q ss_pred -cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 047480 478 -YGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVL 555 (719)
Q Consensus 478 -~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (719)
..-+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|..+ +|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 112445778888887788889999999999988 4568877787777778899999999999999999999864 4444
Q ss_pred HH
Q 047480 556 LS 557 (719)
Q Consensus 556 l~ 557 (719)
.-
T Consensus 349 ~~ 350 (372)
T 3ly7_A 349 IE 350 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.65 E-value=0.0072 Score=48.30 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=43.4
Q ss_pred CChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 412 KTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD-GVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.+...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++.+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566777777777777777777777777764 343 3466667777777777777777777666
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.047 Score=62.40 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=83.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCC
Q 047480 349 VAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHG 428 (719)
Q Consensus 349 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 428 (719)
..++..+...|..+.|.++.+. + ..-.+....+|+++.|.++.+.+ .+...|..+...+.+.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~--------~-----~~~f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD--------Q-----DQKFELALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC--------H-----HHHHHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCC--------c-----chheehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcC
Confidence 4555555666666666554431 1 11234456788999998887766 45678999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
+++.|.+.|.++.. |..+...+...|+.+...++-+.....| .++.-..+|.+.|++++|++++.
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887753 2234444445667666555555444433 23344455667788888887776
Q ss_pred hC
Q 047480 509 SM 510 (719)
Q Consensus 509 ~~ 510 (719)
++
T Consensus 761 ~~ 762 (814)
T 3mkq_A 761 KS 762 (814)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.53 E-value=0.0095 Score=47.23 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 047480 490 MVDLLARDGRLDEAYGLIQSM-PYDA-NSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRW 566 (719)
Q Consensus 490 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (719)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888776 2334 455 77777777888888999999999999998888766522 444
Q ss_pred HHHHHHHHHH
Q 047480 567 EEARQVRKLM 576 (719)
Q Consensus 567 ~~A~~~~~~m 576 (719)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.52 E-value=0.0048 Score=49.02 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=53.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCch-hHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 523 LAACRLHRNAKIGEIAGQKLLDLEPDHGA-HYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
...+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34577889999999999999999999999 99999999999999999999999998754
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.025 Score=48.47 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 515 NSVIWRALLAACRLHR---NAKIGEIAGQKLLDLE-P-DHGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
+..+.-.+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444 3445555555555555 4 2344555566666666666666666666554
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.25 E-value=0.12 Score=42.51 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 047480 496 RDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKL 575 (719)
Q Consensus 496 ~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (719)
.+|++.....-+-.+. .+......-++.....|+-+.-.++...++.-+|-+|.....++++|.+.|+..+|.+++++
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555555553 23444555667778889999999999997777777789999999999999999999999999
Q ss_pred HHhCCCC
Q 047480 576 MDDSGIQ 582 (719)
Q Consensus 576 m~~~~~~ 582 (719)
.-++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999984
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.015 Score=55.52 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=66.4
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-chhHHHHHHHHhhc-CChHHH
Q 047480 501 DEAYGLIQSM-PYDAN---SVIWRALLAACRL-----HRNAKIGEIAGQKLLDLEPDH-GAHYVLLSNMLAET-YRWEEA 569 (719)
Q Consensus 501 ~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 569 (719)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.++..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555544 34555 4567777666766 489999999999999999975 99999999999885 999999
Q ss_pred HHHHHHHHhCCCCCCCc
Q 047480 570 RQVRKLMDDSGIQKPPG 586 (719)
Q Consensus 570 ~~~~~~m~~~~~~~~~~ 586 (719)
.+.+++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999999876654454
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.47 E-value=0.039 Score=47.31 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHH
Q 047480 465 VEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDG---RLDEAYGLIQSM-PYD-A--NSVIWRALLAACRLHRNAKIGEI 537 (719)
Q Consensus 465 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~ 537 (719)
+..+++-|.+....| .++..+.-.+..++.++. ++++++.++++. ... | +...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555554433 255555556666666666 444666666554 112 3 23344555566889999999999
Q ss_pred HHHHHhccCCCCchh
Q 047480 538 AGQKLLDLEPDHGAH 552 (719)
Q Consensus 538 ~~~~~~~~~p~~~~~ 552 (719)
.++++++.+|++..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999987433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.34 E-value=0.078 Score=42.51 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 047480 484 MEHYGCMVDLLARDGRLDEAYGLIQSMP---------YDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYV 554 (719)
Q Consensus 484 ~~~~~~li~~~~~~g~~~eA~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (719)
..-+-.|...+.+.|+++.|...++.+- ..+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344456666666777777666665540 1134567888888899999999999999999999999876644
Q ss_pred HH
Q 047480 555 LL 556 (719)
Q Consensus 555 ~l 556 (719)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.20 E-value=1 Score=51.21 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 047480 251 TAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQAL 330 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 330 (719)
..++..+.+.|..+.|..+.+ +. ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHH
Confidence 667788888888888876653 11 122445677899999999987764 5678999999999999999999
Q ss_pred HHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 331 ELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 331 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+.|.++.. |..+...+...++.+....+-. .....|. ++....+|.++|++++|.+++.++..
T Consensus 702 ~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~-~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 702 EAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK-DAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH-HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH-HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 99998753 3344444555666666555554 4443331 23444556677777777777665544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.38 Score=42.24 Aligned_cols=130 Identities=11% Similarity=0.088 Sum_probs=81.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 388 IDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 388 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
.+....+|+++.|.++.+.+ .+...|..+......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34456788888888887765 4567888888888888888888888887543 2334444555677766
Q ss_pred HHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047480 468 GKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKL 542 (719)
Q Consensus 468 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (719)
-..+-+.....| -++.-...+.-.|+++++.+++.+...-|.... ..+.+|..+.|.++.+.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 555544444333 234445556677888888888887653222111 123355556665555443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.02 E-value=1.3 Score=38.90 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=57.8
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHH
Q 047480 289 YTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLH 368 (719)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 368 (719)
-.++|+++.|.++-+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45567777777666655 3455677777777777777777777766542 233333444455555555444
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 369 QQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+ .....|- ++.....+.-.|+++++.++|.+...
T Consensus 84 ~-iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 84 N-IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp H-HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred H-HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4 3333331 23333344456667776666655544
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.94 E-value=5.1 Score=43.34 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=66.7
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHH
Q 047480 428 GLGETSIAVFREMELMG-LKPDGV--TFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAY 504 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 504 (719)
.+.+.|..+|....+.. +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 37788888888876543 222221 2223333344445345566666654432 233333444445555789999999
Q ss_pred HHHHhCCCCC-CHHHHHHH-HHHHHhcCChhHHHHHHHHHhc
Q 047480 505 GLIQSMPYDA-NSVIWRAL-LAACRLHRNAKIGEIAGQKLLD 544 (719)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~ 544 (719)
+.|+.|+..+ +..-|.-- ..+....|+.++|..+++++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999986443 22222221 1245667889999998888875
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.90 E-value=0.12 Score=40.35 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=45.1
Q ss_pred cChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 482 PQMEHYGCMVDLLARDGR---LDEAYGLIQSM-PYDAN-SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+.+.|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 445666666666654443 57777777765 34453 4455555566777888888888888888888773
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.77 E-value=2.4e-05 Score=79.23 Aligned_cols=264 Identities=13% Similarity=0.154 Sum_probs=174.2
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHH
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACV 356 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 356 (719)
..+.+|..|..++.+.|++.+|.+-|- +..|...|..+|....+.|.+++-+..+...++..- ++..=+.++-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 345678888888888888888776653 345666788888888899999988888776665532 3344457888889
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHH
Q 047480 357 GLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAV 436 (719)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 436 (719)
+.+++.+-.++.. .|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|++..|.+.
T Consensus 128 k~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 128 KTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------CTTTSSSSSSCSGGGSSTTT
T ss_pred hhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------HHHHHHHHHHHHHHHHHHHH
Confidence 8888876666555 46666667788888888888888888877765 55566667777777777654
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCC
Q 047480 437 FREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-P-YDA 514 (719)
Q Consensus 437 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p 514 (719)
-++ .-+..||..+-.+|...+.+.-|.-.--.++ ...+....++..|-+.|.++|-+.+++.. + .+.
T Consensus 193 ArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 193 ARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp TTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred HHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 321 2345688888888888887766654443333 12223334667788888888888888765 3 234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cC-CC------CchhHHHHHHHHhhcCChHHHHH
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLD-LE-PD------HGAHYVLLSNMLAETYRWEEARQ 571 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~A~~ 571 (719)
...+++-|.-.|.+.. .++-.+.++.... ++ |. ....|.-+.-.|.+-..|+.|..
T Consensus 262 HmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 262 HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6667777766666653 3333332222211 11 21 22346667777777777776653
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.11 Score=57.30 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=50.1
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 047480 525 ACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMD 577 (719)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 577 (719)
-|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36788999999999999999999999999999999999999999999999984
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.78 E-value=2.4 Score=34.96 Aligned_cols=140 Identities=10% Similarity=0.013 Sum_probs=85.4
Q ss_pred HhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 047480 321 SQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTA 400 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 400 (719)
.-.|..++..++..+..... +..-++.++--....-+-+-..++++ .+ |-..| ..+||++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd-~I---GkiFD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLD-KI---GSYFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHH-HH---GGGSC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHH-HH---hhhcC----------cHhhhcHHHH
Confidence 33566666666666665431 23333334333333333333333333 11 11112 1245666666
Q ss_pred HHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 047480 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGI 480 (719)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 480 (719)
...+-.+. .+....+..++.+..+|+-++-.+++..+.. +.+|++.....+.+||.+.|+..++.+++.++-+.|+
T Consensus 81 i~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 81 VECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55555544 3444566677888888888888888888644 3577888888888899999999999999988888876
Q ss_pred c
Q 047480 481 K 481 (719)
Q Consensus 481 ~ 481 (719)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.23 E-value=0.52 Score=38.76 Aligned_cols=86 Identities=14% Similarity=-0.037 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C-CH-HHHHHHHHHHHhcCChhHH
Q 047480 463 GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDE---AYGLIQSMP-YD-A-NS-VIWRALLAACRLHRNAKIG 535 (719)
Q Consensus 463 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e---A~~~~~~~~-~~-p-~~-~~~~~ll~~~~~~g~~~~a 535 (719)
..+..+.+-|......|. |+..+--.+..++.++.+..+ ++.++++.- .. | +. ...-.|.-++.+.|+++.|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555543332 555555556666666665544 555555542 11 2 11 1222233345555666666
Q ss_pred HHHHHHHhccCCCC
Q 047480 536 EIAGQKLLDLEPDH 549 (719)
Q Consensus 536 ~~~~~~~~~~~p~~ 549 (719)
.+.++.+++.+|++
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 66666666666654
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.22 E-value=0.14 Score=49.03 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc-CCHH
Q 047480 431 ETSIAVFREMELMGLKPD---GVTFVTVLCACSHG-----GLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD-GRLD 501 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~ 501 (719)
..|..++++.++ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+-.-+..++..+.+.|++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 344444555444 3444 23455555555552 55555555555555422111244444455555442 4555
Q ss_pred HHHHHHHh
Q 047480 502 EAYGLIQS 509 (719)
Q Consensus 502 eA~~~~~~ 509 (719)
+|.+.+++
T Consensus 258 ~a~~~L~k 265 (301)
T 3u64_A 258 GFDEALDR 265 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.38 E-value=2.9 Score=34.94 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 047480 532 AKIGEIAGQKLLDLEPD-HGAHYVLLSNMLAETYRWEEARQVRKLMDD 578 (719)
Q Consensus 532 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 578 (719)
..+++.+++.++...|. .-.....|+-++.+.|++++|+++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555555553 223344555556666666666666665554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.36 E-value=0.95 Score=37.17 Aligned_cols=86 Identities=12% Similarity=0.019 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHcCCcc--ChhHHHHHHHHHHhcCCHHH
Q 047480 428 GLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEE---GKQFFESMLNYGIKP--QMEHYGCMVDLLARDGRLDE 502 (719)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~e 502 (719)
.....+.+-|.+....|. |+..+--.+..++.++..... |+.+++.+.+.+ .| .....-.|.-++.|.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555666666655553 666666667777888776555 888888887543 23 23444456678889999999
Q ss_pred HHHHHHhC-CCCCC
Q 047480 503 AYGLIQSM-PYDAN 515 (719)
Q Consensus 503 A~~~~~~~-~~~p~ 515 (719)
|.+.++.+ ..+|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99988887 45554
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.95 E-value=0.53 Score=37.44 Aligned_cols=65 Identities=12% Similarity=-0.079 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 515 NSVIWRALLAACRLHRNAKIGEIAGQKLLDLE-------PDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+..-+-.+...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445567777889999999999999998742 334567999999999999999999999998764
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.44 E-value=14 Score=35.96 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHH----HHHHHHCCCCCChhhHHHHHHHHh
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWL----FRKMQDSCIQPDAFTFVAMFSACT 221 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~~ 221 (719)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|.....-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778888999999887633 12335566776666654 444556688888887777777765
Q ss_pred ccCCcH-HHHHHHHHHHHhh----CCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 047480 222 ELNDPR-IGKQFHAVVYKNL----GCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTR 291 (719)
Q Consensus 222 ~~~~~~-~a~~i~~~~~~~~----~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~ 291 (719)
.....+ .-..+...+++.. +....|+.....+...|.+.|++.+|+..|- .|-..|...+..++--+.+
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHH
Confidence 533211 2233334444321 1122355666666666666666666666665 2322234444444433333
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.36 E-value=1.5 Score=37.07 Aligned_cols=53 Identities=6% Similarity=-0.111 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQ 582 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 582 (719)
+|.++|..+|+.++.+...-+..|...+..-.++|+...|++++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 78888888888887764444556777777778899999999999988876543
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.65 E-value=27 Score=33.82 Aligned_cols=164 Identities=10% Similarity=0.059 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH----HHHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALEL----FGKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 444556667777777766432 12334555665554443 333344567777777777766665432
Q ss_pred C--h---HHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhC---CC
Q 047480 360 A--L---DFGKRLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQH---GL 429 (719)
Q Consensus 360 ~--~---~~a~~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~---g~ 429 (719)
. . .-...... +..+.+ -..++.....+...|.+.|++.+|+..|-.-.. .+...+..++.-+... |.
T Consensus 107 ~~~~~r~~fi~~ai~-WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~--~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 107 PSEPNLKDVITGMNN-WSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH--DSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TTCTTHHHHHHHHHH-HHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH--HHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCchHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--ccHHHHHHHHHHHHHhcCCCC
Confidence 1 1 12222222 333332 235778888999999999999999998863322 2445555444433333 33
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 430 GETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 430 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
..++-- ..-..+| -|.-.|++..|..+|+...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333211 1112222 2445688888888888665
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.58 E-value=4.3 Score=33.48 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=29.4
Q ss_pred ccChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 047480 481 KPQMEHYGCMVDLLARDGRLD---EAYGLIQSM-PYDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH 549 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~---eA~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (719)
.|+..+--.+..++.++.+.+ +++.++++. ...|. -..+--|.-|+.+.|+++.|.+..+.+++.+|++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 444444444555555554432 233443333 11121 1122233334445555555555555555555544
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.73 E-value=8.5 Score=32.53 Aligned_cols=96 Identities=11% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCCccHHHHHHHHHHcCCCc------hHHHHHHHHhHhCCCCCCCcc----cHHHHHHHH---hccCCcHHHHHHHHHHH
Q 047480 70 NPNIFIWNTLMRGYSRSDSP------QEALVLYTSMLSKGIVSPNNF----TFPFVLNSC---ARLSSFKSGCQIHCHII 136 (719)
Q Consensus 70 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~p~~~----~~~~ll~~~---~~~~~~~~a~~~~~~~~ 136 (719)
..|..+|=..+...-+.|++ ++.+++|++....- ||+.. .|..+.--| ...++++.|+++|..++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35667888888888888888 88888888877643 25431 121111111 12366777777777776
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHc
Q 047480 137 KFGLEFDLFIRNALIHFYSIFGYINNAHKVFE 168 (719)
Q Consensus 137 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 168 (719)
+.+-.. ..+|-.....=.+.|++..|++++.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 553222 4455555555555566666666554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.52 E-value=5.2 Score=44.21 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 047480 251 TAVINMYAKCGLMNMAERVFSTM-GM-SKSTAAWSSMISGYTREGKIERARQLFDQMD 306 (719)
Q Consensus 251 ~~li~~y~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (719)
..-++.+.+.|+++.|+.+.++. .. +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33356677789999999998888 43 4456789999999999999999999999887
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.45 E-value=38 Score=33.04 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHhHhcCCCCChhHHHHHHHHHHccC
Q 047480 284 SMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELF----GKMESLGIHPDEVTMVAVLRACVGLG 359 (719)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 359 (719)
++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344446666777777665432 123344555554444433 33344567777776666666665544
Q ss_pred ChHHH-----HHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhH
Q 047480 360 ALDFG-----KRLHQQYIENVV--FGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 360 ~~~~a-----~~~~~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 432 (719)
.-+-. .+... +-.+.| -.-++.....+...|.+.+++.+|+..|-.-.+ +.+..+..|+.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~-WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~--~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMID-WSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTK--ESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCT--THHHHHHHHHHHHHHTSCGGG
T ss_pred CCCcHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCC--chHHHHHHHHHHHHHhcCCcc
Confidence 32211 11222 223333 345677888899999999999999998853222 233555444444333332221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 433 SIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
+|...-..+| -|...+++..|..+++...
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1222222333 3455678888887766655
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.92 E-value=11 Score=32.38 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 047480 488 GCMVDLLARDGRLDEAYGLIQSMPY 512 (719)
Q Consensus 488 ~~li~~~~~~g~~~eA~~~~~~~~~ 512 (719)
--+..+|...|+.++|+.+++.+|.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3355666667777777777776653
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.74 E-value=11 Score=29.27 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=46.9
Q ss_pred CchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 88 SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
+.-+..+-++.+...... |++....+.|++|.+.+++..|.++++-+...- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666677777777787 999999999999999999999999998776443 233456666554
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.41 E-value=56 Score=33.60 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC----C--CC--hhcHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHH
Q 047480 384 TTAVIDMYAKCGSIDTALSVFYKIPKN----L--KT--VSLFNSIISGLAQHGLGETSIAVFREMELM-GLKPDGVTFVT 454 (719)
Q Consensus 384 ~~~li~~y~k~g~~~~A~~~~~~~~~~----~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ 454 (719)
+...+..|...+++..|..++.++... . ++ ...+..++..+...+++.+|...|.+..+. ...-|...+..
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~ 259 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKP 259 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 344556666666776666666554211 1 11 123555666677777787777777666531 11112221111
Q ss_pred H----HHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhc--CCHHHHHHHHHhCC-CC-------CCHHHHH
Q 047480 455 V----LCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARD--GRLDEAYGLIQSMP-YD-------ANSVIWR 520 (719)
Q Consensus 455 l----l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~eA~~~~~~~~-~~-------p~~~~~~ 520 (719)
+ +....-++....-..+.........-++...|..++.+|... .+++.+.+.|...- .. ....-|.
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 339 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWE 339 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHH
Confidence 1 111111111111111222222111235677788888888654 35677777665541 11 1123466
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 521 ALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
.|......|+-. ...+ |-+...+..++..+.- ..+++......|...|.
T Consensus 340 ~L~~~v~ehnl~-~i~k---------~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 340 DLQKRVIEHNLR-VISE---------YYSRITLLRLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp HHHHHHHHHHHH-HHHH---------HEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH-HHHH---------HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 665554443311 1111 1112234445554432 45788888888886654
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.37 E-value=3.3 Score=42.15 Aligned_cols=68 Identities=16% Similarity=-0.000 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCCCCCc
Q 047480 519 WRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDD-----SGIQKPPG 586 (719)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 586 (719)
...++.++...|+.+++...+++++..+|-+...|..|..+|.++|+..+|.+.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344566677889999999999999999999888999999999999999999998888753 47766554
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.95 E-value=14 Score=31.83 Aligned_cols=129 Identities=9% Similarity=0.059 Sum_probs=64.7
Q ss_pred CCCCchH--HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChh-------hHHHHHHHHHhcCChhHHHHHHHHhHhc
Q 047480 274 GMSKSTA--AWSSMISGYTREGKIERARQLFDQMDQ-----RDLV-------SWTAMISGYSQVGGFSQALELFGKMESL 339 (719)
Q Consensus 274 ~~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (719)
|+.|.-. ++-.-+......|.++.|+-+.+.+.. +++. +...+..++...+++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445433 333445666777888888777665431 3321 3445567777888888888888876532
Q ss_pred C-CCCCh-hHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhc
Q 047480 340 G-IHPDE-VTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSL 416 (719)
Q Consensus 340 g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~ 416 (719)
. .-+.. .+.+++- . -...........+..+---+..+|.+.++.++|..+++.++...+++..
T Consensus 93 ~k~l~k~~s~~~~~~-~-------------~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N-------------SASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp HHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred HHHHhcCCCcccccc-c-------------cCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 1 11111 1111110 0 0000001112234445455777888888888888888888765344443
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.45 E-value=10 Score=38.51 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=45.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HcCCccChhHH
Q 047480 419 SIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-----NYGIKPQMEHY 487 (719)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~ 487 (719)
.++..+...|++++|+..+..+.... +-++..+..++.++...|+..+|.+.|+... +.|++|...+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556666777777777777766541 3355677777777777777777777776653 45777776554
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.20 E-value=61 Score=33.32 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCccC--hh
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELM--GLKPDG---VTFVTVLCACSHGGLVEEGKQFFESML----NYGIKPQ--ME 485 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~g~~p~--~~ 485 (719)
...|...|...|++.+|.+++.++... |..+.. ..+...+..|...+++.+|..+..++. .....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456778889999999999999998743 222221 256667788999999999999999875 2222233 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 486 HYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 486 ~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
.|.+++..+...+++.+|.+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788889999999999998887765
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.88 E-value=15 Score=28.40 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHH
Q 047480 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202 (719)
Q Consensus 123 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (719)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||..+|-+|-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356677777777766653 333333334556778999999999999999999999988664 6777777777777777
Q ss_pred HCCCCCChhhHH
Q 047480 203 DSCIQPDAFTFV 214 (719)
Q Consensus 203 ~~g~~pd~~t~~ 214 (719)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444444
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.60 E-value=11 Score=29.22 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHH
Q 047480 429 LGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492 (719)
Q Consensus 429 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~ 492 (719)
+.-+..+-++.+....+.|+.....+.|.||.+.+++.-|.++|+.+. +.| +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 344566666777777789999999999999999999999999999888 544 34556777654
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.21 E-value=38 Score=34.08 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=25.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHH-cCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 455 VLCACSHGGLVEEGKQFFESMLN-YGIKPQ----MEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
+...|...|++.+|.+++..+.+ ..-..| .+.|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44445555555555555555542 110001 22333444455555555555555443
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.16 E-value=36 Score=40.10 Aligned_cols=168 Identities=8% Similarity=0.027 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCCh
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGAL 361 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 361 (719)
...++..+.+.|..+.|.++..-.++ +..+--.+...|...|++++|.+.|.+.-. |+..+.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhh
Confidence 34566667777888877776655543 444444566778889999999999987532 222221110 000
Q ss_pred HHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhc----CCCCCCC--hhcHHHHHHHHHhCCChhHHH
Q 047480 362 DFGKRLHQQYIENVVF-GRNIFLTTAVIDMYAKCGSIDTALSVFYK----IPKNLKT--VSLFNSIISGLAQHGLGETSI 434 (719)
Q Consensus 362 ~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 434 (719)
.. .-. ....... ..-...|..++..+.+.|.++.+.+.-.. .....++ ...|..+..++...|++++|.
T Consensus 883 ~~---~~~-~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE---FQE-IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH---HHH-HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc---ccc-ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 000 1111111 12234456677777777777666554432 2221122 125888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 047480 435 AVFREMELMGLKPDGVTFVTVLCACSHGGLVEE 467 (719)
Q Consensus 435 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (719)
..+-.+.....+ ...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 998888764333 3456666666666665443
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.73 E-value=15 Score=28.31 Aligned_cols=87 Identities=14% Similarity=-0.009 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHHHHHH
Q 047480 123 SSFKSGCQIHCHIIKFGLEFDLFIRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202 (719)
Q Consensus 123 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (719)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456777777777766653 333333334556778999999999999999999999988764 5566677777776776
Q ss_pred HCCCCCChhhHH
Q 047480 203 DSCIQPDAFTFV 214 (719)
Q Consensus 203 ~~g~~pd~~t~~ 214 (719)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 655 34444443
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.40 E-value=24 Score=27.20 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=47.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHH
Q 047480 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMV 349 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 349 (719)
-+..+...|++++|..+.+...-||.+.|-++.. .+.|..+++...+.++..+| .|....|.
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445677899999999999999999999988765 56788888888887887776 45444443
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.44 E-value=26 Score=27.08 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHH
Q 047480 285 MISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTM 348 (719)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 348 (719)
-+..+...|++++|..+.+...-||.+.|-++.. .+.|..+++...+.++..+| .|....|
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445677899999999999999999999988765 46777888888887887776 4544444
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.72 E-value=36 Score=28.40 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=41.3
Q ss_pred cChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 047480 482 PQMEHYGCMVDLLARDGRLD---EAYGLIQSM-PYDA-NSV-IWRALLAACRLHRNAKIGEIAGQKLLDLEPDHG 550 (719)
Q Consensus 482 p~~~~~~~li~~~~~~g~~~---eA~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (719)
|+..+--.+..++.++.+.+ +++.++++. ...| +.- ..--|.-|+.+.|++++|.++.+.+++.+|+|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 44444444555555555433 344444443 1122 222 223344568899999999999999999999874
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.93 E-value=69 Score=31.26 Aligned_cols=169 Identities=13% Similarity=0.101 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCcchHHHHH----HHHHHCCCCCChhhHHHHHHHHh
Q 047480 146 IRNALIHFYSIFGYINNAHKVFEGSLARDLVSYNTLINGYAQVKEPCPALWLF----RKMQDSCIQPDAFTFVAMFSACT 221 (719)
Q Consensus 146 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~a~~ 221 (719)
++.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +...+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999987633 133455667776666554 45556788899888888888777
Q ss_pred ccCCcH-HHHHHHHHHH----HhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 047480 222 ELNDPR-IGKQFHAVVY----KNLGCVGSNMLLKTAVINMYAKCGLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIE 296 (719)
Q Consensus 222 ~~~~~~-~a~~i~~~~~----~~~~~~~~~~~~~~~li~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 296 (719)
....-+ .-..+...++ +.++.-.-|......+...|.+.+++.+|+..|- .|-.+++..+..++--+.+.+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 665322 2233444443 3322244578888899999999999999999885 365566566655555554444322
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 047480 297 RARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337 (719)
Q Consensus 297 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (719)
++--.+ .-.+--|...++...|..+|+...
T Consensus 185 e~dlfi-----------aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 TAPLYC-----------ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 221111 112334666777777777665544
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.51 E-value=38 Score=31.81 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=23.7
Q ss_pred hccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047480 460 SHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
.+.|.++++++....-++.. +-|...-..|+..|+-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555544444332 233444445555555555555555444433
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.83 E-value=26 Score=28.82 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=48.1
Q ss_pred CchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047480 88 SPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFDLFIRNALIH 152 (719)
Q Consensus 88 ~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 152 (719)
+.-+..+-++.+....+. |++....+.|++|.+.+|+..|.++++-+...- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlV-PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344566667777778887 999999999999999999999999998876543 344556666654
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.99 E-value=1.7e+02 Score=33.09 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHh
Q 047480 60 RSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLS 101 (719)
Q Consensus 60 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 101 (719)
.+.++|.+++.|+ |..++..+.+.++.+.+.++|..+..
T Consensus 220 ~l~~Iy~k~~~~d---y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 220 KSFDFLMNMPNCD---YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHSSSCC---HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCchh---HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3555666655444 66666777777777777777777653
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.38 E-value=27 Score=28.71 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCccChhHHHHHHH
Q 047480 431 ETSIAVFREMELMGLKPDGVTFVTVLCACSHGGLVEEGKQFFESML-NYGIKPQMEHYGCMVD 492 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~ 492 (719)
-+..+-++.+....+.|+.......|.+|.+.+++.-|.++|+-.. +.| +....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3455556666677789999999999999999999999999999888 544 44666777654
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.20 E-value=1.4e+02 Score=35.07 Aligned_cols=126 Identities=10% Similarity=0.164 Sum_probs=61.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhCCCCCch--HHHHHHHHHHHhcCChHHHHHHHHHc-CCCCchHHHHHHHHHH
Q 047480 213 FVAMFSACTELNDPRIGKQFHAVVYKNLGCVGSNM--LLKTAVINMYAKCGLMNMAERVFSTM-GMSKSTAAWSSMISGY 289 (719)
Q Consensus 213 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~a~~~~~~~-~~~~~~~~~~~li~~y 289 (719)
|.-++..+.+.+..+.+.++-..+++......++. ..|..+...+...|++++|...+..+ ....-......|+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 44455555556666666665555555421122211 24556666666666666666666554 1122233444455544
Q ss_pred HhcCCH------------HHHHHHHhhcCC-----CChhh-HHHHHHHHHhcCChhHHHH-HHHHhHh
Q 047480 290 TREGKI------------ERARQLFDQMDQ-----RDLVS-WTAMISGYSQVGGFSQALE-LFGKMES 338 (719)
Q Consensus 290 ~~~g~~------------~~A~~~f~~m~~-----~~~~~-~~~li~~~~~~g~~~~A~~-~~~~m~~ 338 (719)
+..|.. ++..+++..--+ .+... |..|=.-+..+|++.+|-. +|+...+
T Consensus 982 ce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 982 TKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 544433 333333322111 12223 4444455677788776554 4454443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.04 E-value=13 Score=35.05 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 047480 493 LLARDGRLDEAYGLIQSM-PYDA-NSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPD 548 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (719)
.+.+.|.+++|++.+..- ..+| |...=..|+.-++..|++++|..-++.+.+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345566666666555433 3334 3444444555566666666666666666666665
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.36 E-value=79 Score=29.40 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHH
Q 047480 493 LLARDGRLDEAYGLIQ 508 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~ 508 (719)
...+.|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344555555555554
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=58.80 E-value=75 Score=26.12 Aligned_cols=73 Identities=7% Similarity=-0.058 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 047480 445 LKPDGVTFVTVLCACSHGG---LVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM-PYDANSV 517 (719)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~ 517 (719)
-.|+..|--.+..++.++. +..+|+.+++.+.+.+..-....+-.|.-++.|.|++++|.+..+.+ ..+|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3455555444555566555 45678899988886542223556666778899999999999999887 6677644
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.99 E-value=1e+02 Score=27.21 Aligned_cols=80 Identities=9% Similarity=-0.002 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047480 379 RNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVLCA 458 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 458 (719)
++..+-...+.+..+.|+.+....+...+.. ++...-...+.++...|.. +++..+.++.+ .||...-...+.+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~a 166 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADA 166 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 3444444445555555544333333333333 4444444445555554443 23333333332 3444444444444
Q ss_pred HhccCc
Q 047480 459 CSHGGL 464 (719)
Q Consensus 459 ~~~~g~ 464 (719)
+.+.+.
T Consensus 167 L~~~~~ 172 (211)
T 3ltm_A 167 LGEIGG 172 (211)
T ss_dssp HHHHCS
T ss_pred HHHhCc
Confidence 444443
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.24 E-value=1.1e+02 Score=27.01 Aligned_cols=170 Identities=14% Similarity=0.065 Sum_probs=88.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRAC 355 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 355 (719)
.++..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+.. ++...+.++.. .+|...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 445555555555566655544444455555555544444445555555543 23333333332 34555555556666
Q ss_pred HccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHH
Q 047480 356 VGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIA 435 (719)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (719)
...++.+....+.. .+ -.++..+-...+.++.+.|..+....+...+.. ++...-...+.++.+.+. .++..
T Consensus 106 ~~~~~~~~~~~L~~-~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~-~~~~~ 177 (211)
T 3ltm_A 106 GQIGDERAVEPLIK-AL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKD--EDGWVRQSAADALGEIGG-ERVRA 177 (211)
T ss_dssp HHHCCGGGHHHHHH-HT----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HHhCcHHHHHHHHH-HH----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc-hhHHH
Confidence 66655433322222 22 245666666777777777765544444444544 666666666667766665 45666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHh
Q 047480 436 VFREMELMGLKPDGVTFVTVLCACS 460 (719)
Q Consensus 436 ~~~~m~~~g~~p~~~t~~~ll~a~~ 460 (719)
.+.++.+. ++...-...+.++.
T Consensus 178 ~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 178 AMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCHHHHHHHHHHHH
Confidence 66666553 34443333333333
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.75 E-value=52 Score=33.67 Aligned_cols=60 Identities=10% Similarity=-0.075 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 047480 417 FNSIISGLAQHGLGETSIAVFREMELMGLKPDG--VTFVTVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
+..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..+...+++..+.....++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444455555555555555555443222222 244444555555555555555555544
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.19 E-value=1.1e+02 Score=26.72 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 047480 277 KSTAAWSSMISGYTREGKIERARQLFDQMDQRDL 310 (719)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~ 310 (719)
+|..+....+....+.|..+....+.+.+..+|.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~ 59 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDA 59 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCH
Confidence 3444444444444444443333333333333333
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.28 E-value=1.1e+02 Score=27.17 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCCCCChh---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 047480 398 DTALSVFYKIPKNLKTVS---LFNSIISGLAQHGLGETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFE 473 (719)
Q Consensus 398 ~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 473 (719)
+.+.+.|........|+. .|-..+..+ ..+...++.++|..|...|+--.. .-|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555443333433 444444443 234455777888888777765554 355666666667778888888887
Q ss_pred HHHHcCCccC
Q 047480 474 SMLNYGIKPQ 483 (719)
Q Consensus 474 ~m~~~g~~p~ 483 (719)
.-++.+-.|-
T Consensus 140 ~GI~~~A~P~ 149 (202)
T 3esl_A 140 LGAENNCRPY 149 (202)
T ss_dssp HHHHTTCBSH
T ss_pred HHHHcCCccH
Confidence 7776666664
No 274
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=53.17 E-value=1.5e+02 Score=30.25 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=80.9
Q ss_pred CChHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 047480 261 GLMNMAERVFSTMGMSKSTAAWSSMISGYTREGKIERARQLFDQMDQ---RDLVSWTAMISGYSQVGGFSQALELFGKME 337 (719)
Q Consensus 261 g~~~~a~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (719)
.+.+-|.++..+.|++--...|..-.+.+...|++++|.++--.-++ ++..|.+.+-..=.+.|+..--+.+|..+.
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll 422 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILL 422 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence 55566666666667777777777777888888888888888776655 444444444433344566666777777777
Q ss_pred hcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047480 338 SLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPK 409 (719)
Q Consensus 338 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 409 (719)
+.| +.+..--.-+++.-...++.+..+. ++.+..+..+......+ +..+..-|..+|.+...
T Consensus 423 ~~g-~Ln~~ESlEl~r~vL~q~r~~llek----Wl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 423 DQG-QLNKYESLELCRPVLQQGRKQLLEK----WLKEDKLECSEELGDLV-----KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHS-CCCHHHHHHHHHHHHHTTCHHHHHH----HHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHCC
T ss_pred ccC-ccchHHhhHHhHHHHhccHHHHHHH----HHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHcCC
Confidence 766 4444333333444444444443333 34444455554433322 44456666666655443
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.04 E-value=3.1e+02 Score=31.13 Aligned_cols=217 Identities=8% Similarity=-0.027 Sum_probs=106.6
Q ss_pred HHhcCCHHHHHHHHhhcCCC----Ch--hhHHHHHHHHHhcCChhHHHHHHHHhHhcCC-------CCChhHHHHH--HH
Q 047480 289 YTREGKIERARQLFDQMDQR----DL--VSWTAMISGYSQVGGFSQALELFGKMESLGI-------HPDEVTMVAV--LR 353 (719)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~l--l~ 353 (719)
....|+.+++..+++..... +. ..-..+.-|....|..+++++++.......- .+....-..+ --
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45567778888888776541 21 2223344556667766677777776654311 0101111111 12
Q ss_pred HHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCC-hhcHHHHHHHHHhCCChhH
Q 047480 354 ACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYAKCGSIDTALSVFYKIPKNLKT-VSLFNSIISGLAQHGLGET 432 (719)
Q Consensus 354 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 432 (719)
++...++- ++.+.+.+.+....-.......-+|.-.|.-.|+-+....++..+.+...+ +.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22223332 333333323332210000112223444455567766666666654332122 2223333344557788888
Q ss_pred HHHHHHHHHHcCCCCCH-HHHH---HHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047480 433 SIAVFREMELMGLKPDG-VTFV---TVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQ 508 (719)
Q Consensus 433 A~~~~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 508 (719)
+..+.+.+... +|. +-|. .+..+|+..|+.....+++..+.+.. ..+......+.-++.-.|+.+.+.++++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888877763 233 2333 34456778888877777887777421 2223323333333334566555566655
Q ss_pred hC
Q 047480 509 SM 510 (719)
Q Consensus 509 ~~ 510 (719)
.+
T Consensus 619 ~L 620 (963)
T 4ady_A 619 LL 620 (963)
T ss_dssp TG
T ss_pred HH
Confidence 44
No 276
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.83 E-value=1.7e+02 Score=29.52 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047480 493 LLARDGRLDEAYGLIQS 509 (719)
Q Consensus 493 ~~~~~g~~~eA~~~~~~ 509 (719)
..++.|+.+-+.-+++.
T Consensus 317 ~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 317 VASHYGNIKLVKFLLQH 333 (437)
T ss_dssp HHHHSSCSHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHhc
Confidence 33455666555544443
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.78 E-value=43 Score=34.31 Aligned_cols=94 Identities=12% Similarity=-0.046 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC----CCChhcHHHHHHHHHhCCChhHHHHHHHHHHH---cCCCCCHHHH--H
Q 047480 383 LTTAVIDMYAKCGSIDTALSVFYKIPKN----LKTVSLFNSIISGLAQHGLGETSIAVFREMEL---MGLKPDGVTF--V 453 (719)
Q Consensus 383 ~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~--~ 453 (719)
+...+.+.|.++|+++.|.+.|.++... ..-+..|-..+..+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5567888888899999988888876543 12344677778888888999999888888754 2222332211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 047480 454 TVLCACSHGGLVEEGKQFFESML 476 (719)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~ 476 (719)
.-...+...+++..|-+.|-+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 11122456788888888887766
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.92 E-value=1.1e+02 Score=29.49 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 047480 506 LIQSMPYDAN--SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDS 579 (719)
Q Consensus 506 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 579 (719)
+|...+++|. ..+..+-++.+.+++|+..|...+++++++.|... ..++|.++.......
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 3444455653 34666777779999999999999999999999532 346677777776654
No 279
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.93 E-value=3.5e+02 Score=29.22 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhc
Q 047480 75 IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCAR 121 (719)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~ 121 (719)
.| .+|-.+.|.|.+++|.++.++....- . --...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~-~-~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANI-K-KVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-------CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhH-h-hhhHHHHHHHHHHHh
Confidence 56 46677788888888888887654321 0 112466777777763
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.88 E-value=95 Score=27.87 Aligned_cols=83 Identities=7% Similarity=-0.025 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 047480 497 DGRLDEAYGLIQSMPYDAN---SVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVR 573 (719)
Q Consensus 497 ~g~~~eA~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (719)
.|...+..+++.+.+..++ ...-.+.+......|+.+....+.+.-...+..+..-. .-.....+.|+.+-+..++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHH
Confidence 3444445555555432222 11112334444566777766666655333222111111 1122234566666666555
Q ss_pred HHHHhCC
Q 047480 574 KLMDDSG 580 (719)
Q Consensus 574 ~~m~~~~ 580 (719)
+...+.+
T Consensus 231 ~~~~~~~ 237 (240)
T 3eu9_A 231 EARQAKG 237 (240)
T ss_dssp HHC----
T ss_pred HhhhccC
Confidence 5544433
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.58 E-value=82 Score=29.75 Aligned_cols=91 Identities=3% Similarity=-0.044 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 047480 489 CMVDLLARDGRLDEAYGLIQSMPYDANSVIWRALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEE 568 (719)
Q Consensus 489 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (719)
..+...+..|+.+-+.-+++.-+...+...-.+.+......|+.+....+.+.-...+..+..-.......-...|+.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 344555667777766666665432223312233444455678888777777665544432211111111112234553
Q ss_pred HHHHHHHHHhCCCCC
Q 047480 569 ARQVRKLMDDSGIQK 583 (719)
Q Consensus 569 A~~~~~~m~~~~~~~ 583 (719)
++.+.+.+.|..+
T Consensus 209 --~~v~~Ll~~gad~ 221 (285)
T 3kea_A 209 --EMLQALFKYDINI 221 (285)
T ss_dssp --HHHHHHTTSCBCS
T ss_pred --HHHHHHHHcCCCC
Confidence 3455566666543
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.75 E-value=2.2e+02 Score=26.16 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCChh----hHHHHHHHHHcCCCcchHHHHHHHHHHCCCCCC
Q 047480 148 NALIHFYSIFGYINNAHKVFEGSLARDLV----SYNTLINGYAQVKEPCPALWLFRKMQDSCIQPD 209 (719)
Q Consensus 148 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 209 (719)
++.+...++.|+++....+++.-...+.. -++ .+...+..|+. ++++.+.+.|..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~----~~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRE----DIVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCH----HHHHHHHHcCCCCc
Confidence 45566667788888888888765443221 122 33334455554 34455555665544
No 283
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=40.26 E-value=9.6 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=8.3
Q ss_pred CCCccCCCCC
Q 047480 709 KKGNCSCMDF 718 (719)
Q Consensus 709 ~~g~csc~~~ 718 (719)
.+|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 4899999976
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.73 E-value=1.9e+02 Score=24.98 Aligned_cols=17 Identities=0% Similarity=0.313 Sum_probs=10.2
Q ss_pred HhcCCHHHHHHHHhhcC
Q 047480 290 TREGKIERARQLFDQMD 306 (719)
Q Consensus 290 ~~~g~~~~A~~~f~~m~ 306 (719)
+..|+.+....++..-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 45566666666665443
No 285
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.51 E-value=5.2e+02 Score=29.28 Aligned_cols=156 Identities=11% Similarity=0.048 Sum_probs=82.3
Q ss_pred HHHHHHHhcCC---hHHHHHHHhcCCCC------CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047480 386 AVIDMYAKCGS---IDTALSVFYKIPKN------LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPDGVTFVTVL 456 (719)
Q Consensus 386 ~li~~y~k~g~---~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 456 (719)
.++...|+.|. .+.|.+.|+..... +||. -+.....-.+.|..++-..++++.... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 45555666664 44667777653221 2332 333344445567666666666666653 2333445677
Q ss_pred HHHhccCcHHHHHHHHHHHHHcC-CccChhHHHHHHHHHHhcCCHHHHHHHHHh----C--CCCCCHHHHHHHHHHHHhc
Q 047480 457 CACSHGGLVEEGKQFFESMLNYG-IKPQMEHYGCMVDLLARDGRLDEAYGLIQS----M--PYDANSVIWRALLAACRLH 529 (719)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~eA~~~~~~----~--~~~p~~~~~~~ll~~~~~~ 529 (719)
.+++...+.+...++++...... +.+ ......+.......--.+.|.+++.+ + ........+..++.+....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRK-QDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 77777778877777777665322 222 22333333222222224556666654 1 1222344566777776665
Q ss_pred CChhHHHHHHHHHhccCC
Q 047480 530 RNAKIGEIAGQKLLDLEP 547 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p 547 (719)
-..++...-++..++-.+
T Consensus 845 ~~t~~~~~~~~~f~~~~~ 862 (909)
T 4fke_A 845 FSSEFELQQLEQFKKNNM 862 (909)
T ss_dssp CCSHHHHHHHHHHHTTCS
T ss_pred cCCHHHHHHHHHHHhhCC
Confidence 555555555666665444
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.13 E-value=2e+02 Score=25.68 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=10.1
Q ss_pred HhcCChhHHHHHHHHhHhcCC
Q 047480 321 SQVGGFSQALELFGKMESLGI 341 (719)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~ 341 (719)
++.|+.+-+..+++.+.+.|.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 445555555555544444443
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.90 E-value=2.9e+02 Score=26.49 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCCCh--hhHHHHHHHHHcCCC--cchHHHHHHHHHH
Q 047480 147 RNALIHFYSIFGYINNAHKVFEGSLARDL--VSYNTLINGYAQVKE--PCPALWLFRKMQD 203 (719)
Q Consensus 147 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~ 203 (719)
...++.-|...|+.++|...++++..|.- ..-..+|..-...++ -+-+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 46788889999999999999999876641 122233333333332 2344556677653
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.56 E-value=2.1e+02 Score=24.13 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccC
Q 047480 431 ETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQ 483 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 483 (719)
+++.++|..|...|+--.. .-|......+...|++.+|.++|+.-++.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3477777777777765554 3555556666677778888877777776665664
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.54 E-value=1.1e+02 Score=24.99 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHhHhcCCC
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQRDL---VSWTAMISGYSQVGG--FSQALELFGKMESLGIH 342 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 342 (719)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34556666666666666666666654421 122333333333322 24455666666655543
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.28 E-value=1.1e+02 Score=24.94 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCC---ChhhHHHHHHHHHcCCC--cchHHHHHHHHHHCCCCCCh
Q 047480 147 RNALIHFYSIFGYINNAHKVFEGSLAR---DLVSYNTLINGYAQVKE--PCPALWLFRKMQDSCIQPDA 210 (719)
Q Consensus 147 ~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~ 210 (719)
.+.++.-|...|+.++|.+.++++..| ..+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 355677777788888888888877654 22334444555555432 34566777777766654433
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.88 E-value=84 Score=28.94 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=31.2
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCCCCChh-------HHHHHHHHHH--ccCChHHHHHHHH
Q 047480 317 ISGYSQVGGFSQALELFGKMESLGIHPDEV-------TMVAVLRACV--GLGALDFGKRLHQ 369 (719)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~--~~~~~~~a~~~~~ 369 (719)
+...++.|+.+....+++.+.+.|..++.. -.+.+..|.. +.|..+.++.+++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~ 70 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence 334466788877777777666666555532 2233333332 5677777776666
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.64 E-value=2.2e+02 Score=23.93 Aligned_cols=54 Identities=7% Similarity=0.014 Sum_probs=36.9
Q ss_pred hHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC
Q 047480 90 QEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143 (719)
Q Consensus 90 ~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 143 (719)
.++.++|..|...|+-.--+.-|..-...+-..|++.+|.+++..-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 457888888888776512233455555666677888888888888777776653
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.19 E-value=2.3e+02 Score=27.23 Aligned_cols=193 Identities=15% Similarity=0.082 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCCh--hcHHHHHHHHHhCCCh--hHHHHHHHHHHHcCCCCCHH--HHHHHHHH
Q 047480 385 TAVIDMYAKCGSIDTALSVFYKIPKNLKTV--SLFNSIISGLAQHGLG--ETSIAVFREMELMGLKPDGV--TFVTVLCA 458 (719)
Q Consensus 385 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~--t~~~ll~a 458 (719)
.++++-|...|+.++|...++++.. |.. .....+|..-..+++. +.+-.++..+...-+.++.+ .|..++..
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~--p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNL--GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC--GGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 4677788888899999998888765 431 1223333333333332 23444556665432333332 34444443
Q ss_pred HhccC-cHHHHH----HHHHHHHHcCCccChhHHHHHHHHHHhcCC--HHHHHHHHHh------C----C----CCCCH-
Q 047480 459 CSHGG-LVEEGK----QFFESMLNYGIKPQMEHYGCMVDLLARDGR--LDEAYGLIQS------M----P----YDANS- 516 (719)
Q Consensus 459 ~~~~g-~~~~a~----~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~eA~~~~~~------~----~----~~p~~- 516 (719)
+.... +...|. .++..++..++-|-.......-......|+ +..|..++.. . + ..|..
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 33221 111222 233333322322221111100000000111 2333333321 0 0 01111
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCC--hHHHHHHHHHHHhCCC
Q 047480 517 --VIWRALLAACRLHRNAKIGEIAGQKLLDLEPDH--GAHYVLLSNMLAETYR--WEEARQVRKLMDDSGI 581 (719)
Q Consensus 517 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~ 581 (719)
.....++.-|...|+.++|.+.++.+-. |.. ...+..+..+.-+.+. .+...+++..+.+.|+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~--p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCC--CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 2345677778888999988888777642 210 1122333444444322 3446677777776665
No 294
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=31.13 E-value=14 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=18.2
Q ss_pred ceEEEecCCcccccCCCccCCC
Q 047480 695 REIMVRDAIRFHLFKKGNCSCM 716 (719)
Q Consensus 695 ~~~~~~d~~~~h~~~~g~csc~ 716 (719)
..|=+.|.+..|+|+||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4577899999999999997644
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.44 E-value=2.6e+02 Score=23.92 Aligned_cols=54 Identities=6% Similarity=0.105 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccCh
Q 047480 431 ETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQM 484 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 484 (719)
+++.++|..|...|+--.. ..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3466777777777765554 35555555666777888888888777766666653
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=29.32 E-value=4.4e+02 Score=26.28 Aligned_cols=285 Identities=10% Similarity=0.079 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc----CCCC---chHHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhH-----
Q 047480 250 KTAVINMYAKCGLMNMAERVFSTM----GMSK---STAAWSSMISGYTREGK-IERARQLFDQMDQ---RDLVSW----- 313 (719)
Q Consensus 250 ~~~li~~y~~~g~~~~a~~~~~~~----~~~~---~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~----- 313 (719)
...|...|.+.|+.++...++... +.-+ .......|++.+....+ .+.-.++.....+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788899999999988888876 1122 33456677777766432 3333333333221 111233
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHhHhcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047480 314 -TAMISGYSQVGGFSQALELFGKMESLGIHPDEVTMVAVLRACVGLGALDFGKRLHQQYIENVVFGRNIFLTTAVIDMYA 392 (719)
Q Consensus 314 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 392 (719)
.-++..|...|++.+|++++.++.+.=-..|..++. + .++-.-+.+|.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~l--l-----------------------------ev~lle~~~~~ 150 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLL--V-----------------------------EVQLLESKTYH 150 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHH--H-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhH--H-----------------------------HHHHHHHHHHH
Confidence 246778888888888888888887632122222111 0 11122333444
Q ss_pred hcCChHHHHHHHhcCCCC----CCChhc--HHHH--HHHHH-hCCChhHHHHHHHHHHHc-C--CCCC---HHHHHHHHH
Q 047480 393 KCGSIDTALSVFYKIPKN----LKTVSL--FNSI--ISGLA-QHGLGETSIAVFREMELM-G--LKPD---GVTFVTVLC 457 (719)
Q Consensus 393 k~g~~~~A~~~~~~~~~~----~~~~~~--~~~l--i~~~~-~~g~~~~A~~~~~~m~~~-g--~~p~---~~t~~~ll~ 457 (719)
..+++.++...+...... .+++.. ---. .-.+. ..+++.+|...|-+..+. . ..|. ...|.. +.
T Consensus 151 ~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~ 229 (394)
T 3txn_A 151 ALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LC 229 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HH
T ss_pred HhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HH
Confidence 444444444444322111 011111 1111 12244 566777776666554321 0 0121 123322 22
Q ss_pred HHhccCcHHHHHHHHH-HH-HHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHH---HHHHHHHHHhcC
Q 047480 458 ACSHGGLVEEGKQFFE-SM-LNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSMP--YDANSVI---WRALLAACRLHR 530 (719)
Q Consensus 458 a~~~~g~~~~a~~~~~-~m-~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~---~~~ll~~~~~~g 530 (719)
+..... ..+-..++. .. ..+ ..|+...+..++.+| +.+++.+..++++... +..|... |..|....+
T Consensus 230 aLl~~~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--- 303 (394)
T 3txn_A 230 KIMLGQ-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--- 303 (394)
T ss_dssp HHHTTC-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH---
T ss_pred HHHcCC-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH---
Confidence 222222 222222221 11 122 346666666666655 5667877777777653 3445543 222221111
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 047480 531 NAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGI 581 (719)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 581 (719)
...+.++ ..|-.......++..+.- ..+++....-+|...|.
T Consensus 304 -----~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 -----EQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -----HHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -----HHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 1122222 246555566677766643 67889999999987765
No 297
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.65 E-value=1.2e+02 Score=27.36 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=8.8
Q ss_pred hcCChHHHHHHHHHHHh
Q 047480 562 ETYRWEEARQVRKLMDD 578 (719)
Q Consensus 562 ~~g~~~~A~~~~~~m~~ 578 (719)
..|+.+.+.++.+.+.+
T Consensus 219 ~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44555555555555543
No 298
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.29 E-value=5.1e+02 Score=27.94 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=15.7
Q ss_pred hHHHHHHHHHc---CCCcchHHHHHHHH
Q 047480 177 SYNTLINGYAQ---VKEPCPALWLFRKM 201 (719)
Q Consensus 177 ~~~~li~~~~~---~g~~~~A~~~~~~m 201 (719)
-+..||..|.+ ..++.+|++.|--+
T Consensus 355 N~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 355 RFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 35666766665 45666777766555
No 299
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.04 E-value=1.3e+02 Score=24.71 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=25.8
Q ss_pred HHHHhcCChHHHHHHHhcCCCC--CCChhcHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 047480 389 DMYAKCGSIDTALSVFYKIPKN--LKTVSLFNSIISGLAQHGLGETSIAVFREMELMGLKPD 448 (719)
Q Consensus 389 ~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 448 (719)
...++.|+.+....+++..... ..+...++.+.. +..|+.+ +++.+.+.|..|+
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~----~v~~Ll~~g~~~~ 62 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTA----IALELLKQGASPN 62 (156)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHH----HHHHHHHCCCCCC
Confidence 3345567777777777662111 233333444433 5555544 3333444555544
No 300
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.81 E-value=53 Score=25.25 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=28.7
Q ss_pred CChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHH
Q 047480 56 NGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEA 92 (719)
Q Consensus 56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 92 (719)
.+.+.|+++++.++.+...+|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3578888888888888888888888888776665544
No 301
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=27.53 E-value=4.8e+02 Score=27.24 Aligned_cols=68 Identities=6% Similarity=-0.112 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH----HHHHh-ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 047480 513 DANSVIWRALLAACRLHRNAKIGEIA----GQKLL-DLEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSG 580 (719)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 580 (719)
.+|......|-..+..+|..++-+++ .+.-+ +..|++......|-..|.+.|++-+|.+++-.+-..+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45666666777777777765533321 11111 2345666667788889999999999999999998774
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.52 E-value=1.1e+02 Score=28.02 Aligned_cols=54 Identities=6% Similarity=-0.172 Sum_probs=29.0
Q ss_pred HHHcCCCcchHHHHHHHHHHCCCCCChhh-------HHHHHHHHh--ccCCcHHHHHHHHHHH
Q 047480 184 GYAQVKEPCPALWLFRKMQDSCIQPDAFT-------FVAMFSACT--ELNDPRIGKQFHAVVY 237 (719)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~i~~~~~ 237 (719)
..++.|+.+....+++.+.+.|..++... .+.+..|+. +.|..+..+.+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34456666666666666666655555332 233333332 4566666666665543
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.26 E-value=2.6e+02 Score=23.94 Aligned_cols=146 Identities=8% Similarity=-0.019 Sum_probs=69.0
Q ss_pred CChHHHHHHhccCC-C---CCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcc---cHHHHHHHHhccCCcHHH
Q 047480 56 NGLFRSRILFSQID-N---PNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNF---TFPFVLNSCARLSSFKSG 128 (719)
Q Consensus 56 g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~---~~~~ll~~~~~~~~~~~a 128 (719)
|+.+....+++.-. . +|..-++.|..+ ++.|+. ++.+.+.+.|.. ++.. ..+.+.. .+..|+.+-.
T Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~-~~~~~~~g~t~l~~-A~~~~~~~~~ 88 (201)
T 3hra_A 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGAD-INLQNSISDSPYLY-AGAQGRTEIL 88 (201)
T ss_dssp TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCC-TTCCCTTSCCHHHH-HHHTTCHHHH
T ss_pred ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCC-CCCCCCCCCCHHHH-HHHcCCHHHH
Confidence 88888888887654 2 232233333333 344543 344555555644 4322 2233333 3344555544
Q ss_pred HHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHHccC-CC---CChhhHHHHHHHHHcCCCcchHHHHHHHHH
Q 047480 129 CQIHCHIIKFGLEFDLF--IRNALIHFYSIFGYINNAHKVFEGS-LA---RDLVSYNTLINGYAQVKEPCPALWLFRKMQ 202 (719)
Q Consensus 129 ~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (719)
+.+++ ..+..++.. ...+.+...++.|+.+-+..+++.- .. +|..-++.|..+.........-.++++.+.
T Consensus 89 ~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll 165 (201)
T 3hra_A 89 AYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165 (201)
T ss_dssp HHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred HHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence 44332 222222111 1112334445667777777777654 21 233334444444333222333356666677
Q ss_pred HCCCCCChh
Q 047480 203 DSCIQPDAF 211 (719)
Q Consensus 203 ~~g~~pd~~ 211 (719)
+.|..|+..
T Consensus 166 ~~ga~~~~~ 174 (201)
T 3hra_A 166 ENGADQSIK 174 (201)
T ss_dssp HTTCCTTCC
T ss_pred HCCCCCCcc
Confidence 777666543
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.26 E-value=2.3e+02 Score=25.87 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=19.5
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047480 481 KPQMEHYGCMVDLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 481 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 509 (719)
.++.......+..+.|-|+.++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34455556666777788888888777644
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.96 E-value=2.8e+02 Score=24.51 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 047480 500 LDEAYGLIQSMPYDANSV--IW-----RALLAACRLHRNAKIGEIAGQKLLDLEPDHGAHYVLL 556 (719)
Q Consensus 500 ~~eA~~~~~~~~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (719)
++.|+.+++.+...-|.. .- -..+..|.+.|.+++|.+++++.++-.|++...-.-|
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 456777777774332311 11 2233458899999999999999888776654433333
No 306
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.70 E-value=3.8e+02 Score=24.68 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 047480 420 IISGLAQHGLGETSIAVFREMEL 442 (719)
Q Consensus 420 li~~~~~~g~~~~A~~~~~~m~~ 442 (719)
.+.++.+.|.. +++..+.++.+
T Consensus 241 a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 241 IIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHhcCch-hhhHHHHHHHh
Confidence 34445555542 45555555554
No 307
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.59 E-value=6.2e+02 Score=27.08 Aligned_cols=79 Identities=6% Similarity=-0.092 Sum_probs=47.2
Q ss_pred hchHHHHHHHhhccCCCCChHHHHHHhccCCCCCccHHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHH
Q 047480 39 HISSSQLISFFALSGCKNGLFRSRILFSQIDNPNIFIWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNS 118 (719)
Q Consensus 39 ~~~~~~l~~~y~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~ 118 (719)
..+-+.-+..+.+ . ++...-...|.. +..+...-.....+....|+..+|......+-..|. ........++..
T Consensus 72 ~~Lr~~~l~~l~~--~-~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~--~~p~~c~~l~~~ 145 (618)
T 1qsa_A 72 RTLQSRFVNELAR--R-EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK--SQPNACDKLFSV 145 (618)
T ss_dssp HHHHHHHHHHHHH--T-TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS--CCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--C-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHH
Confidence 3555666666666 5 777777776666 323333334466667777887777777777776663 233344455555
Q ss_pred HhccC
Q 047480 119 CARLS 123 (719)
Q Consensus 119 ~~~~~ 123 (719)
..+.|
T Consensus 146 ~~~~g 150 (618)
T 1qsa_A 146 WRASG 150 (618)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 44433
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.54 E-value=1.1e+02 Score=25.85 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHhHhcCCC
Q 047480 282 WSSMISGYTREGKIERARQLFDQMDQRDL---VSWTAMISGYSQVGG--FSQALELFGKMESLGIH 342 (719)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 342 (719)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.++ -+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45566666666667777666666654421 122333333333222 23455666666555543
No 309
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.50 E-value=3.8e+02 Score=24.65 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=6.5
Q ss_pred CChhHHHHHHHHHHhcC
Q 047480 379 RNIFLTTAVIDMYAKCG 395 (719)
Q Consensus 379 ~~~~~~~~li~~y~k~g 395 (719)
++..+-...+.+..+.|
T Consensus 140 ~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIN 156 (280)
T ss_dssp SCHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 33333334444444443
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.32 E-value=3.4e+02 Score=24.05 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCCcccEEEECCE
Q 047480 518 IWRALLAACRLHRNAKIGEIAGQKLLD--LEPDHGAHYVLLSNMLAETYRWEEARQVRKLMDDSGIQKPPGWSYIEHNGT 595 (719)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~ 595 (719)
.|-.++..| ..++......+|..+.. +.-..+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P------------ 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP------------ 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS------------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------------
Confidence 555555544 23445677888887764 556667789999999999999999999999988876543
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 047480 596 LHRFLASKKSHPQTKEIELMLKDMTMKLKSAGYVPN 631 (719)
Q Consensus 596 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~ 631 (719)
.+.+.....+...+|...+++-|
T Consensus 149 -------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 149 -------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 23344455566677777777433
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.22 E-value=2.5e+02 Score=24.96 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=10.9
Q ss_pred HcCCCcchHHHHHHHHHHCCCCC
Q 047480 186 AQVKEPCPALWLFRKMQDSCIQP 208 (719)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p 208 (719)
++.|+.+-+..+++.+.+.|..+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Confidence 44455555444544444444433
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.90 E-value=2.9e+02 Score=24.97 Aligned_cols=118 Identities=11% Similarity=0.004 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHh---CCChhchHHHHH----HHhhccCCCCC--------hHHHHHHhccCCC-CCccHHHHHHHHHH
Q 047480 21 LKQALQIHGQIVHS---GLNHHISSSQLI----SFFALSGCKNG--------LFRSRILFSQIDN-PNIFIWNTLMRGYS 84 (719)
Q Consensus 21 ~~~~~~~~~~~~~~---~~~~~~~~~~l~----~~y~~~~~~g~--------~~~A~~~f~~~~~-~~~~~~~~li~~~~ 84 (719)
+..-++-|..-+.. |-+|..+|-..| +.|-. . +. ++.+.+.|...+. +|-.-|-.+=--|+
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~--g-~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya 127 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQ--G-ETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV 127 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTT--C-CCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcC--C-CcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 44555555544443 334444444433 44543 2 21 5666666666654 34333332222233
Q ss_pred cCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC
Q 047480 85 RSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIHCHIIKFGLEFD 143 (719)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 143 (719)
.. .+++.++|..|...|+-.--+.-|......+-..|++.+|.+++..-++.+-.|-
T Consensus 128 ~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 128 NY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp TT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred Hc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 32 3578889999988887522233456666666778888888888888888876663
No 313
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=24.79 E-value=50 Score=24.81 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCcccCCCccccccChhhhhHhhhhhhHHHHHHHH
Q 047480 608 QTKEIELMLKDMTMKLKSAGYVPNTVQVVFDVDEEEKETVVSYHSEKLALAFG 660 (719)
Q Consensus 608 ~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 660 (719)
...+|...+++...+++..||.||...+- .+ ...+-++.+-..||
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~G----~e----ayef~~e~v~~e~g 58 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILFG----RE----AYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEC----HH----HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEc----HH----HHHHHHHHHhHhhc
Confidence 35667778888888889999999987532 22 22334555555565
No 314
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.50 E-value=3.4e+02 Score=23.38 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 047480 276 SKSTAAWSSMISGYTREGKIERARQLFDQMDQRDLVSWTAMISGYSQVGGFSQALELFGKME 337 (719)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (719)
.++..+-...+.+..+.|+.+....+...+..++...-...+.++.+.|. .++...+..+.
T Consensus 118 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34444444555555555443333333333333443333333344444433 33444444444
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.48 E-value=5e+02 Score=29.60 Aligned_cols=111 Identities=7% Similarity=-0.194 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCH--------
Q 047480 447 PDGVTFVTVLCACSHGGLVEEGKQFFESMLNYGIKPQMEHYGCMVDLLARDGRLDEAYGLIQSM--PYDANS-------- 516 (719)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~-------- 516 (719)
|+.... ++..|...|..+-+.++.... +.+...--.+..+|...|++++|.+.|+++ ++.++.
T Consensus 810 ~~~~~~--l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~ 882 (950)
T 4gq2_M 810 NDLVTE--LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 882 (950)
T ss_dssp CCHHHH--HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHH
T ss_pred CccHHH--HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhh
Q ss_pred ---------------HHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCch----hHHHHHHHHhhcC
Q 047480 517 ---------------VIWRALLAACRLHRNAKIGEIAGQKLLD-LEPDHGA----HYVLLSNMLAETY 564 (719)
Q Consensus 517 ---------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~g 564 (719)
.-|.-++.-+.+++-++.+.+.++.+++ +.++++. .+..+-.+.+..|
T Consensus 883 ~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.46 E-value=3.5e+02 Score=23.10 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=53.5
Q ss_pred hHHHHHHhccCCC-CCcc----HHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 047480 58 LFRSRILFSQIDN-PNIF----IWNTLMRGYSRSDSPQEALVLYTSMLSKGIVSPNNFTFPFVLNSCARLSSFKSGCQIH 132 (719)
Q Consensus 58 ~~~A~~~f~~~~~-~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 132 (719)
++.+.+.|...+. +|-. .|-..+..+ +++.++|..|...|+-.--+.-|..-...+-..|++..|.+++
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555666655543 3322 344444332 4578899999998876222334566666667789999999999
Q ss_pred HHHHHhCCCCChhH
Q 047480 133 CHIIKFGLEFDLFI 146 (719)
Q Consensus 133 ~~~~~~g~~~~~~~ 146 (719)
..-++.+-.|-..+
T Consensus 120 ~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 120 QEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHTTCBSHHHH
T ss_pred HHHHHcCCCcHHHH
Confidence 99888887775443
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.36 E-value=3.2e+02 Score=24.74 Aligned_cols=52 Identities=10% Similarity=0.234 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCcc
Q 047480 431 ETSIAVFREMELMGLKPDG-VTFVTVLCACSHGGLVEEGKQFFESMLNYGIKP 482 (719)
Q Consensus 431 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 482 (719)
+++.++|..|...|+--.. ..|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555666666666654443 244555555556666666666666666544444
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.22 E-value=3.1e+02 Score=23.01 Aligned_cols=71 Identities=13% Similarity=0.269 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCC--HHHHHHHHhhcCCCChhhHHHHHHHH
Q 047480 250 KTAVINMYAKCGLMNMAERVFSTMGMSK--STAAWSSMISGYTREGK--IERARQLFDQMDQRDLVSWTAMISGY 320 (719)
Q Consensus 250 ~~~li~~y~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~y~~~g~--~~~A~~~f~~m~~~~~~~~~~li~~~ 320 (719)
.+.++.-|...|+.++|.+.+++++.+. ...+...+..+.-+.++ .+.+..++..+...+.++-..+..|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf 86 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 86 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 4667888999999999999999986532 23344555555555333 45667777777666777777776665
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.91 E-value=3.3e+02 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=9.5
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 047480 492 DLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~ 509 (719)
...++.|+.+-+.-+++.
T Consensus 111 ~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 111 HYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666655555543
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.86 E-value=3.8e+02 Score=25.90 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 047480 492 DLLARDGRLDEAYGLIQS 509 (719)
Q Consensus 492 ~~~~~~g~~~eA~~~~~~ 509 (719)
..-++.|+.+-+.-+++.
T Consensus 249 ~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHc
Confidence 334455666655555554
No 321
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.23 E-value=1.4e+02 Score=21.73 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHhcCCCCCCChhcHHHHHHHHHhCCChhHHHHHHHHH
Q 047480 401 LSVFYKIPKNLKTVSLFNSIISGLAQHGLGETSIAVFREM 440 (719)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 440 (719)
..++.+++..++++.+|+-+...+-+.--..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3577888888899999998887666555555666655544
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.06 E-value=2.8e+02 Score=25.33 Aligned_cols=21 Identities=10% Similarity=-0.146 Sum_probs=12.3
Q ss_pred HHHHHcCCCcchHHHHHHHHH
Q 047480 182 INGYAQVKEPCPALWLFRKMQ 202 (719)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~ 202 (719)
++.+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 555555666666666665544
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.04 E-value=4.1e+02 Score=23.48 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHH---HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 047480 417 FNSIISGL---AQHGLGETSIAVFREMELMGLKPDGVTFVTVLCACSHGGL 464 (719)
Q Consensus 417 ~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (719)
.--+|+++ .+..+++.|+-.+-+|++.| .|.-+.=..++.|.-..|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 33455555 34678999999999999998 6666666666666655554
No 324
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.49 E-value=2.3e+02 Score=23.48 Aligned_cols=47 Identities=6% Similarity=0.002 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 047480 178 YNTLINGYAQVKEPCPALWLFRKMQDSCIQPDAFTFVAMFSACTELN 224 (719)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 224 (719)
-..++..+...+..-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444444445555566666555544445555444444444443
No 325
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.49 E-value=1.9e+02 Score=30.07 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 047480 530 RNAKIGEIAGQKLLDLEPDHGAHYVLLSNMLAETYRWEEAR 570 (719)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (719)
...+.|...|.++..+.|++...|..|+-+....|+.-+|.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 33445555555555555555555555555554444444433
No 326
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.25 E-value=57 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=18.5
Q ss_pred CCCchHHHHHHHHhHhCCCCCCCcc
Q 047480 86 SDSPQEALVLYTSMLSKGIVSPNNF 110 (719)
Q Consensus 86 ~g~~~~A~~~~~~m~~~g~~~p~~~ 110 (719)
.=+++.|+..|.++...|-.||+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3478899999999987776545544
No 327
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.86 E-value=2.6e+02 Score=26.15 Aligned_cols=13 Identities=15% Similarity=-0.023 Sum_probs=8.1
Q ss_pred CChHHHHHHhccC
Q 047480 56 NGLFRSRILFSQI 68 (719)
Q Consensus 56 g~~~~A~~~f~~~ 68 (719)
|+.+-+..+++.-
T Consensus 42 g~~~~v~~Ll~~g 54 (285)
T 3kea_A 42 NNVRLVCTLLNAG 54 (285)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCC
Confidence 6666666666553
No 328
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.58 E-value=33 Score=21.39 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=8.7
Q ss_pred cccccCchhH
Q 047480 675 NLRICGDCHL 684 (719)
Q Consensus 675 ~~~~~~~~~~ 684 (719)
+-|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 7899999985
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.35 E-value=1.6e+02 Score=30.70 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCccCh--hHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 047480 450 VTFVTVLCACSHGGLVEEGKQFFESMLNY-GIKPQM--EHY-GCMVDLLARDGRLDEAYGLIQSM 510 (719)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~--~~~-~~li~~~~~~g~~~eA~~~~~~~ 510 (719)
..++.++.-|.+.+.+++|..+.....-. .-.++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46777788888888888888888877510 001111 122 23456667788888888777664
Done!