BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047481
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 68/161 (42%), Gaps = 52/161 (32%)
Query: 16 KYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDD-QLNRGDEISQSLLDAIEAS---- 70
KYDVFLSFRG DTR NF S LY L ++ I F DD +L G S L IE S
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 71 -AISREMA--NW-------------------------------------LEERFK----- 85
+S A +W L E+FK
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 86 ENSEKLQTWRNALKEAADLSGFHSQNIRPESELVREVVNQI 126
E+ EK+ WR AL A LSG S + +S+LV ++ N+I
Sbjct: 128 EDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 51/143 (35%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYSALSQKGIEAF-IDDQLNRGDEISQSLLDAIEASAIS-- 73
Y+VFLSFRG DTR+ FT LY +L + I F DD+L +G EI +LL AI+ S I
Sbjct: 36 YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVP 95
Query: 74 -------------------------------------------REMANWLEERFKENSEK 90
R ++ F++++ K
Sbjct: 96 IISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155
Query: 91 -----LQTWRNALKEAADLSGFH 108
+Q W++ALK+ DL G+H
Sbjct: 156 FDGQTIQNWKDALKKVGDLKGWH 178
>pdb|2IDE|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|B Chain B, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|C Chain C, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|D Chain D, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|E Chain E, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|F Chain F, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|G Chain G, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|H Chain H, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|I Chain I, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|J Chain J, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|K Chain K, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|L Chain L, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IIH|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8 (H32
Form)
pdb|3JQJ|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|B Chain B, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|C Chain C, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|D Chain D, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|E Chain E, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|F Chain F, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|G Chain G, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|H Chain H, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|I Chain I, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|J Chain J, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|K Chain K, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|L Chain L, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQK|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8 (H32
Form)
pdb|3JQM|A Chain A, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|B Chain B, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|C Chain C, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|D Chain D, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|E Chain E, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|F Chain F, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|G Chain G, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|H Chain H, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|I Chain I, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
Length = 157
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 83 RFKENSEKLQTWRNALKEA------ADLSGFHSQNIRPESELVREVVNQIL--KRLAEVS 134
R + +EK +T+R A EA LS + LV + IL K+ A++
Sbjct: 12 RMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLI 71
Query: 135 PCSNKNPLVGVESRVEEIESLLGAESK 161
P + PL GVE RVE LL AE +
Sbjct: 72 PLCHPLPLTGVEVRVE----LLKAEKR 94
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 107 FHSQNIRPESELVRE---VVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAE---S 160
FH ++I PE + +RE +++++++R+ E SN L G + + GA S
Sbjct: 99 FHDRDIAPEGKTLRETNKILDKVVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATTCS 158
Query: 161 KDVYA 165
DV+A
Sbjct: 159 ADVFA 163
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 18 DVFLSFRGEDTRDNFTSHLYSA-----LSQKGIEA----------FIDDQLNRGDEISQS 62
D+ L R + NF + LY+A LS++G +A F+ +L+RG E +
Sbjct: 564 DIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITA 623
Query: 63 LLDAIEASAISREMANWLEERF 84
L +A++ + +RE+ + F
Sbjct: 624 LYEALDLAQAAREVYELVWSEF 645
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 59 ISQSLLDAIEASAISREMANWLEERFKENSEKLQTWRNALKEAADLSGF 107
I Q++L++ E E+ NW F TW+NA++ L +
Sbjct: 13 IRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKY 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,181,350
Number of Sequences: 62578
Number of extensions: 198469
Number of successful extensions: 633
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 14
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)