Query 047481
Match_columns 279
No_of_seqs 239 out of 2500
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.2E-55 2.7E-60 449.7 26.6 274 1-279 1-334 (1153)
2 PLN03194 putative disease resi 100.0 4.6E-31 9.9E-36 211.4 8.9 124 9-132 19-179 (187)
3 PF00931 NB-ARC: NB-ARC domain 99.9 1.1E-23 2.4E-28 185.1 11.4 130 145-279 1-139 (287)
4 KOG4658 Apoptotic ATPase [Sign 99.9 4E-22 8.7E-27 196.7 13.0 130 143-279 161-299 (889)
5 PRK00411 cdc6 cell division co 99.1 6.4E-10 1.4E-14 102.2 13.3 115 134-253 24-150 (394)
6 PF05729 NACHT: NACHT domain 99.1 6.4E-10 1.4E-14 89.1 9.8 111 164-279 1-130 (166)
7 TIGR02928 orc1/cdc6 family rep 99.1 2.3E-09 4.9E-14 97.5 14.0 112 137-253 12-141 (365)
8 cd00009 AAA The AAA+ (ATPases 99.0 9.4E-09 2E-13 79.9 11.8 121 143-278 1-129 (151)
9 PF13401 AAA_22: AAA domain; P 98.9 1.7E-08 3.8E-13 77.8 9.2 109 163-278 4-125 (131)
10 COG2256 MGS1 ATPase related to 98.9 1.3E-08 2.8E-13 90.9 9.2 111 140-278 24-142 (436)
11 PF13191 AAA_16: AAA ATPase do 98.8 4.5E-09 9.9E-14 85.9 5.7 50 141-190 1-51 (185)
12 PTZ00202 tuzin; Provisional 98.8 7.9E-08 1.7E-12 87.5 12.7 146 91-248 193-368 (550)
13 PF13173 AAA_14: AAA domain 98.8 4.4E-08 9.5E-13 75.7 8.8 96 164-278 3-98 (128)
14 PF01637 Arch_ATPase: Archaeal 98.8 1.7E-08 3.6E-13 85.3 6.5 55 142-198 1-55 (234)
15 smart00255 TIR Toll - interleu 98.7 1.2E-08 2.5E-13 79.9 4.5 58 16-74 1-59 (140)
16 TIGR03015 pepcterm_ATPase puta 98.7 2.5E-07 5.3E-12 80.5 12.9 91 163-259 43-143 (269)
17 COG1474 CDC6 Cdc6-related prot 98.7 2.8E-07 6.2E-12 83.5 12.0 131 137-274 14-159 (366)
18 PTZ00112 origin recognition co 98.6 3.2E-07 7E-12 89.7 11.6 112 137-253 752-881 (1164)
19 KOG2028 ATPase related to the 98.6 1.1E-07 2.4E-12 84.1 6.7 116 140-278 138-260 (554)
20 PF01582 TIR: TIR domain; Int 98.6 1.2E-08 2.6E-13 80.2 0.1 56 19-74 1-59 (141)
21 PRK04841 transcriptional regul 98.6 9.5E-07 2.1E-11 89.5 13.6 126 137-278 11-161 (903)
22 PRK09376 rho transcription ter 98.5 1.7E-07 3.7E-12 84.6 6.6 87 163-252 169-267 (416)
23 cd01128 rho_factor Transcripti 98.5 1.8E-07 3.9E-12 80.4 6.5 87 163-252 16-114 (249)
24 PRK06893 DNA replication initi 98.5 6.7E-07 1.4E-11 76.2 9.2 36 163-198 39-74 (229)
25 PRK12402 replication factor C 98.5 9.5E-07 2.1E-11 79.3 10.1 52 137-190 12-63 (337)
26 PRK13342 recombination factor 98.4 9.6E-07 2.1E-11 81.8 9.1 109 138-274 10-124 (413)
27 PF05496 RuvB_N: Holliday junc 98.4 1.1E-06 2.3E-11 73.6 8.0 55 137-191 21-78 (233)
28 PRK04195 replication factor C 98.4 1.1E-06 2.5E-11 82.9 9.2 52 137-188 11-64 (482)
29 PLN03025 replication factor C 98.4 3E-06 6.6E-11 75.8 11.0 125 137-277 10-137 (319)
30 TIGR01242 26Sp45 26S proteasom 98.4 4.1E-07 8.8E-12 82.9 5.4 53 138-190 120-183 (364)
31 PRK08116 hypothetical protein; 98.4 1.6E-06 3.5E-11 75.5 8.5 99 165-277 116-219 (268)
32 TIGR00767 rho transcription te 98.4 1.8E-06 3.9E-11 78.4 8.8 89 162-253 167-267 (415)
33 PRK07003 DNA polymerase III su 98.4 2.9E-06 6.3E-11 82.3 10.6 131 137-278 13-158 (830)
34 PF00004 AAA: ATPase family as 98.4 5.5E-06 1.2E-10 63.6 10.3 23 166-188 1-23 (132)
35 COG2909 MalT ATP-dependent tra 98.3 1.2E-05 2.5E-10 78.3 14.4 130 137-279 16-170 (894)
36 PRK00440 rfc replication facto 98.3 5E-06 1.1E-10 74.0 11.3 124 138-277 15-140 (319)
37 TIGR03420 DnaA_homol_Hda DnaA 98.3 1.2E-06 2.6E-11 74.1 6.8 57 140-198 15-73 (226)
38 TIGR00635 ruvB Holliday juncti 98.3 1.1E-06 2.4E-11 77.9 6.7 51 140-190 4-57 (305)
39 PRK13341 recombination factor 98.3 4E-06 8.6E-11 82.3 10.0 110 137-274 25-141 (725)
40 PHA02544 44 clamp loader, smal 98.2 6.4E-06 1.4E-10 73.4 9.8 119 137-277 18-139 (316)
41 PRK10865 protein disaggregatio 98.2 8.9E-06 1.9E-10 81.7 11.6 66 118-189 160-225 (857)
42 PRK12323 DNA polymerase III su 98.2 9.5E-06 2.1E-10 77.8 11.1 135 137-278 13-163 (700)
43 PRK00080 ruvB Holliday junctio 98.2 3.2E-06 7E-11 75.9 7.6 54 137-190 22-78 (328)
44 PRK12377 putative replication 98.2 7E-06 1.5E-10 70.6 9.3 36 163-198 101-136 (248)
45 PRK14962 DNA polymerase III su 98.2 1.3E-05 2.9E-10 75.2 11.8 51 137-188 11-61 (472)
46 PRK08691 DNA polymerase III su 98.2 5.8E-06 1.3E-10 79.9 9.4 51 137-188 13-63 (709)
47 TIGR02639 ClpA ATP-dependent C 98.2 7.8E-06 1.7E-10 81.0 10.6 66 118-189 164-229 (731)
48 PRK14960 DNA polymerase III su 98.2 1.3E-05 2.9E-10 76.9 11.7 52 137-189 12-63 (702)
49 PF05673 DUF815: Protein of un 98.2 1.1E-05 2.4E-10 68.4 10.0 54 137-190 24-79 (249)
50 PRK14961 DNA polymerase III su 98.2 1.5E-05 3.2E-10 72.6 11.5 51 137-188 13-63 (363)
51 KOG2543 Origin recognition com 98.2 4.7E-06 1E-10 74.3 7.7 110 138-255 4-129 (438)
52 PRK14949 DNA polymerase III su 98.2 1.3E-05 2.9E-10 79.2 11.6 128 137-278 13-158 (944)
53 smart00382 AAA ATPases associa 98.2 7E-06 1.5E-10 62.9 7.9 35 164-198 3-37 (148)
54 PRK14957 DNA polymerase III su 98.2 2.2E-05 4.8E-10 74.7 12.5 51 137-188 13-63 (546)
55 CHL00095 clpC Clp protease ATP 98.2 3.1E-06 6.7E-11 84.8 6.9 48 139-188 178-225 (821)
56 KOG2227 Pre-initiation complex 98.2 1.4E-05 3.1E-10 73.0 10.4 145 122-274 135-292 (529)
57 PRK07952 DNA replication prote 98.2 6.9E-05 1.5E-09 64.3 14.2 50 149-198 85-134 (244)
58 PRK03992 proteasome-activating 98.2 5.5E-06 1.2E-10 76.1 7.8 51 139-189 130-191 (389)
59 PF13676 TIR_2: TIR domain; PD 98.2 5.2E-07 1.1E-11 66.7 0.6 54 19-74 1-54 (102)
60 PRK08181 transposase; Validate 98.2 7.5E-06 1.6E-10 71.3 7.8 35 164-198 107-141 (269)
61 PRK08727 hypothetical protein; 98.1 1.1E-05 2.3E-10 69.0 8.5 57 140-198 19-76 (233)
62 PRK14963 DNA polymerase III su 98.1 2.3E-05 4.9E-10 74.2 11.2 133 137-277 11-154 (504)
63 TIGR03346 chaperone_ClpB ATP-d 98.1 1.7E-05 3.6E-10 79.9 10.7 51 137-189 170-220 (852)
64 PRK14956 DNA polymerase III su 98.1 1.3E-05 2.8E-10 74.6 8.9 52 137-189 15-66 (484)
65 PRK14969 DNA polymerase III su 98.1 3.1E-05 6.7E-10 73.8 11.7 52 137-189 13-64 (527)
66 PRK14958 DNA polymerase III su 98.1 2.9E-05 6.3E-10 73.6 11.2 51 137-188 13-63 (509)
67 PRK09183 transposase/IS protei 98.1 8.7E-06 1.9E-10 70.6 7.1 34 164-197 103-136 (259)
68 PRK07940 DNA polymerase III su 98.1 5E-05 1.1E-09 69.7 12.3 50 140-189 5-62 (394)
69 KOG0744 AAA+-type ATPase [Post 98.1 1.5E-05 3.3E-10 69.7 8.4 79 163-252 177-261 (423)
70 PRK07994 DNA polymerase III su 98.1 2.9E-05 6.3E-10 75.1 11.2 52 137-189 13-64 (647)
71 PRK10536 hypothetical protein; 98.1 5.6E-05 1.2E-09 64.9 11.7 131 138-275 53-209 (262)
72 PRK14964 DNA polymerase III su 98.1 3.6E-05 7.9E-10 72.2 11.5 122 137-277 10-154 (491)
73 PRK08903 DnaA regulatory inact 98.1 1.3E-05 2.7E-10 68.1 7.6 59 139-198 17-77 (227)
74 TIGR02881 spore_V_K stage V sp 98.1 2.2E-05 4.8E-10 68.1 9.3 27 162-188 41-67 (261)
75 PRK06526 transposase; Provisio 98.1 7E-06 1.5E-10 71.0 6.0 27 164-190 99-125 (254)
76 TIGR03345 VI_ClpV1 type VI sec 98.1 2.6E-05 5.6E-10 78.3 10.8 67 118-190 169-235 (852)
77 TIGR02397 dnaX_nterm DNA polym 98.1 2.6E-05 5.6E-10 70.6 9.8 51 137-188 11-61 (355)
78 PRK08084 DNA replication initi 98.1 2.9E-05 6.3E-10 66.4 9.6 36 163-198 45-80 (235)
79 PF01695 IstB_IS21: IstB-like 98.1 6.7E-06 1.4E-10 67.3 5.3 35 164-198 48-82 (178)
80 PRK14951 DNA polymerase III su 98.1 5.4E-05 1.2E-09 73.0 12.2 51 137-188 13-63 (618)
81 PRK05564 DNA polymerase III su 98.0 3.9E-05 8.4E-10 68.4 10.5 121 140-278 4-132 (313)
82 PRK14955 DNA polymerase III su 98.0 4E-05 8.6E-10 70.7 10.5 52 137-189 13-64 (397)
83 PRK06645 DNA polymerase III su 98.0 6.6E-05 1.4E-09 70.9 11.7 52 137-189 18-69 (507)
84 PRK05642 DNA replication initi 98.0 1.9E-05 4.1E-10 67.5 7.2 36 163-198 45-80 (234)
85 TIGR03689 pup_AAA proteasome A 98.0 6.7E-05 1.5E-09 70.8 11.3 54 137-190 179-243 (512)
86 cd01133 F1-ATPase_beta F1 ATP 98.0 2.1E-05 4.4E-10 68.3 7.3 88 163-253 69-175 (274)
87 TIGR00678 holB DNA polymerase 98.0 0.00018 4E-09 59.1 12.7 38 151-189 3-40 (188)
88 PF00308 Bac_DnaA: Bacterial d 98.0 3.5E-05 7.5E-10 65.2 8.4 99 162-277 33-138 (219)
89 PRK14970 DNA polymerase III su 98.0 4.5E-05 9.8E-10 69.5 9.7 52 137-189 14-65 (367)
90 PRK07764 DNA polymerase III su 98.0 6.7E-05 1.5E-09 74.7 11.2 51 137-188 12-62 (824)
91 PRK05896 DNA polymerase III su 97.9 9E-05 1.9E-09 70.9 11.3 51 137-188 13-63 (605)
92 PF04665 Pox_A32: Poxvirus A32 97.9 2.3E-05 4.9E-10 66.8 6.3 34 165-198 15-48 (241)
93 TIGR00362 DnaA chromosomal rep 97.9 4.9E-05 1.1E-09 70.2 9.0 98 163-277 136-240 (405)
94 PRK00149 dnaA chromosomal repl 97.9 5.5E-05 1.2E-09 70.9 9.4 99 162-277 147-252 (450)
95 PRK06921 hypothetical protein; 97.9 6.8E-05 1.5E-09 65.3 9.3 36 163-198 117-153 (266)
96 PTZ00454 26S protease regulato 97.9 3.3E-05 7.1E-10 71.0 7.5 54 137-190 142-206 (398)
97 PRK14088 dnaA chromosomal repl 97.9 7.6E-05 1.7E-09 69.7 10.0 99 163-277 130-235 (440)
98 cd01131 PilT Pilus retraction 97.9 4.5E-05 9.7E-10 63.5 7.7 105 164-277 2-107 (198)
99 PRK14954 DNA polymerase III su 97.9 9.1E-05 2E-09 71.6 10.6 52 137-189 13-64 (620)
100 cd01120 RecA-like_NTPases RecA 97.9 0.00012 2.7E-09 57.8 9.8 33 166-198 2-34 (165)
101 PRK11331 5-methylcytosine-spec 97.9 2.7E-05 5.9E-10 71.9 6.6 55 140-198 175-231 (459)
102 PRK14952 DNA polymerase III su 97.9 0.00018 4E-09 69.1 12.5 51 137-188 10-60 (584)
103 PRK11034 clpA ATP-dependent Cl 97.9 2.8E-05 6.1E-10 76.8 7.2 48 139-188 185-232 (758)
104 PRK14087 dnaA chromosomal repl 97.9 7.7E-05 1.7E-09 69.8 9.6 100 163-277 141-247 (450)
105 PF05621 TniB: Bacterial TniB 97.9 0.00012 2.5E-09 64.2 9.8 101 147-252 44-156 (302)
106 PRK09111 DNA polymerase III su 97.9 6.7E-05 1.5E-09 72.3 9.1 52 137-189 21-72 (598)
107 PRK06835 DNA replication prote 97.9 8E-05 1.7E-09 66.7 8.9 35 164-198 184-218 (329)
108 PRK14950 DNA polymerase III su 97.9 7.3E-05 1.6E-09 72.3 9.3 51 137-188 13-63 (585)
109 PRK09087 hypothetical protein; 97.8 0.00014 3.1E-09 61.7 10.0 25 163-187 44-68 (226)
110 COG2607 Predicted ATPase (AAA+ 97.8 0.00033 7.2E-09 59.1 11.8 116 137-278 57-182 (287)
111 TIGR02903 spore_lon_C ATP-depe 97.8 0.00014 2.9E-09 70.7 11.0 50 137-188 151-200 (615)
112 PRK09112 DNA polymerase III su 97.8 0.00018 4E-09 65.0 11.1 52 137-189 20-71 (351)
113 PRK14959 DNA polymerase III su 97.8 0.00017 3.7E-09 69.4 11.3 51 137-188 13-63 (624)
114 PTZ00361 26 proteosome regulat 97.8 3.4E-05 7.4E-10 71.6 6.3 52 140-191 183-245 (438)
115 COG0470 HolB ATPase involved i 97.8 0.0003 6.5E-09 62.6 12.2 119 142-277 3-147 (325)
116 TIGR02880 cbbX_cfxQ probable R 97.8 0.00014 3.1E-09 63.9 9.9 25 165-189 60-84 (284)
117 PRK12422 chromosomal replicati 97.8 0.00011 2.4E-09 68.6 9.6 98 163-277 141-243 (445)
118 KOG0733 Nuclear AAA ATPase (VC 97.8 5.3E-05 1.1E-09 71.4 7.3 96 137-251 187-292 (802)
119 PRK10865 protein disaggregatio 97.8 0.00014 2.9E-09 73.3 10.8 58 140-197 568-632 (857)
120 cd01393 recA_like RecA is a b 97.8 0.00027 5.9E-09 59.7 11.1 97 150-251 6-124 (226)
121 COG0542 clpA ATP-binding subun 97.8 9E-05 1.9E-09 72.5 9.0 125 140-276 491-641 (786)
122 PRK00771 signal recognition pa 97.8 0.0012 2.5E-08 61.5 15.9 29 162-190 94-122 (437)
123 TIGR00602 rad24 checkpoint pro 97.8 3.4E-05 7.4E-10 74.6 5.8 52 137-188 81-135 (637)
124 PRK12608 transcription termina 97.8 0.00011 2.5E-09 66.3 8.6 99 150-252 121-231 (380)
125 KOG0989 Replication factor C, 97.8 9E-05 2E-09 64.5 7.5 127 137-276 33-166 (346)
126 PRK04296 thymidine kinase; Pro 97.8 8.5E-05 1.8E-09 61.4 7.1 105 164-278 3-115 (190)
127 KOG1514 Origin recognition com 97.8 0.0003 6.6E-09 67.3 11.4 137 137-276 393-546 (767)
128 PRK09361 radB DNA repair and r 97.8 0.00012 2.6E-09 62.0 8.1 48 151-198 11-58 (225)
129 CHL00181 cbbX CbbX; Provisiona 97.8 0.00037 7.9E-09 61.4 11.3 25 164-188 60-84 (287)
130 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00014 3.1E-09 73.0 9.7 51 140-190 566-623 (852)
131 PHA00729 NTP-binding motif con 97.7 0.00012 2.6E-09 61.8 7.7 27 162-188 16-42 (226)
132 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00024 5.2E-09 71.6 11.2 58 140-197 565-629 (852)
133 CHL00176 ftsH cell division pr 97.7 0.00014 3E-09 70.7 9.1 49 140-188 183-241 (638)
134 PF13207 AAA_17: AAA domain; P 97.7 2.7E-05 5.8E-10 59.1 3.4 23 165-187 1-23 (121)
135 PRK05541 adenylylsulfate kinas 97.7 8E-05 1.7E-09 60.6 6.5 36 163-198 7-42 (176)
136 PRK14948 DNA polymerase III su 97.7 0.0002 4.4E-09 69.4 10.2 52 137-189 13-64 (620)
137 PF02562 PhoH: PhoH-like prote 97.7 0.00027 5.8E-09 58.9 9.5 123 146-275 6-152 (205)
138 TIGR02237 recomb_radB DNA repa 97.7 0.00011 2.4E-09 61.4 7.3 44 155-198 4-47 (209)
139 PRK08939 primosomal protein Dn 97.7 0.0002 4.2E-09 63.7 9.1 116 145-277 136-259 (306)
140 COG1484 DnaC DNA replication p 97.7 0.00013 2.7E-09 63.2 7.7 37 162-198 104-140 (254)
141 TIGR02639 ClpA ATP-dependent C 97.7 0.00029 6.3E-09 70.0 11.2 49 140-188 454-509 (731)
142 PF07728 AAA_5: AAA domain (dy 97.7 7E-05 1.5E-09 58.4 5.5 22 166-187 2-23 (139)
143 PRK06067 flagellar accessory p 97.7 0.00039 8.4E-09 59.3 10.5 49 150-198 12-60 (234)
144 PRK14953 DNA polymerase III su 97.7 0.00054 1.2E-08 64.7 12.3 51 137-188 13-63 (486)
145 TIGR01241 FtsH_fam ATP-depende 97.7 0.00021 4.5E-09 67.8 9.5 51 138-188 53-113 (495)
146 PRK08451 DNA polymerase III su 97.7 0.00063 1.4E-08 64.6 12.4 51 137-188 11-61 (535)
147 cd01394 radB RadB. The archaea 97.7 0.00028 6.2E-09 59.4 9.2 49 150-198 6-54 (218)
148 PRK06620 hypothetical protein; 97.7 6.1E-05 1.3E-09 63.5 4.9 24 164-187 45-68 (214)
149 TIGR01243 CDC48 AAA family ATP 97.7 0.00012 2.6E-09 72.8 7.7 52 139-190 177-239 (733)
150 PRK14974 cell division protein 97.7 0.0027 5.8E-08 57.1 15.6 29 162-190 139-167 (336)
151 CHL00095 clpC Clp protease ATP 97.7 0.00034 7.3E-09 70.4 10.8 128 140-277 509-660 (821)
152 PRK08118 topology modulation p 97.7 3.3E-05 7.2E-10 62.5 3.0 33 165-197 3-38 (167)
153 PLN00020 ribulose bisphosphate 97.7 0.0001 2.2E-09 66.3 6.3 30 161-190 146-175 (413)
154 PRK11889 flhF flagellar biosyn 97.7 0.0041 8.9E-08 56.8 16.5 29 162-190 240-268 (436)
155 PRK07261 topology modulation p 97.6 0.00017 3.6E-09 58.6 6.6 23 165-187 2-24 (171)
156 PRK09354 recA recombinase A; P 97.6 0.00064 1.4E-08 61.2 10.8 93 149-251 45-148 (349)
157 smart00763 AAA_PrkA PrkA AAA d 97.6 4.8E-05 1E-09 68.4 3.6 49 141-189 52-104 (361)
158 PRK14965 DNA polymerase III su 97.6 0.00084 1.8E-08 64.8 12.3 51 137-188 13-63 (576)
159 COG1618 Predicted nucleotide k 97.6 6.8E-05 1.5E-09 59.4 3.9 34 164-197 6-40 (179)
160 PF13177 DNA_pol3_delta2: DNA 97.6 0.0012 2.6E-08 53.1 11.2 119 144-278 1-141 (162)
161 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00053 1.2E-08 58.3 9.6 48 151-198 7-60 (235)
162 COG1373 Predicted ATPase (AAA+ 97.6 0.00044 9.5E-09 63.7 9.6 91 165-277 39-129 (398)
163 PRK07471 DNA polymerase III su 97.6 0.0015 3.2E-08 59.6 12.9 51 137-188 16-66 (365)
164 PRK06305 DNA polymerase III su 97.6 0.00059 1.3E-08 63.9 10.5 51 137-188 14-64 (451)
165 PRK14086 dnaA chromosomal repl 97.6 0.00039 8.4E-09 66.8 9.4 96 163-277 314-418 (617)
166 PRK05563 DNA polymerase III su 97.6 0.0014 3.1E-08 63.0 13.3 51 137-188 13-63 (559)
167 TIGR00064 ftsY signal recognit 97.6 0.0025 5.4E-08 55.7 13.7 37 161-197 70-106 (272)
168 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00058 1.3E-08 59.4 9.7 23 165-187 23-45 (262)
169 cd01121 Sms Sms (bacterial rad 97.6 0.0006 1.3E-08 62.2 10.1 50 149-198 68-117 (372)
170 PRK06647 DNA polymerase III su 97.6 0.0013 2.8E-08 63.2 12.7 51 137-188 13-63 (563)
171 PRK07667 uridine kinase; Provi 97.5 0.0002 4.4E-09 59.3 6.3 41 149-189 3-43 (193)
172 PRK06696 uridine kinase; Valid 97.5 0.00016 3.4E-09 61.3 5.7 46 145-190 3-49 (223)
173 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0014 3E-08 56.0 11.5 49 150-198 8-56 (237)
174 TIGR02012 tigrfam_recA protein 97.5 0.00073 1.6E-08 60.2 9.7 93 149-251 40-143 (321)
175 COG1222 RPT1 ATP-dependent 26S 97.5 0.00057 1.2E-08 60.8 8.8 50 141-190 152-212 (406)
176 cd00983 recA RecA is a bacter 97.5 0.00075 1.6E-08 60.2 9.7 92 149-250 40-142 (325)
177 KOG0991 Replication factor C, 97.5 0.00018 3.9E-09 60.5 5.1 51 137-189 24-74 (333)
178 PRK07133 DNA polymerase III su 97.5 0.00067 1.4E-08 66.4 9.7 51 137-188 15-65 (725)
179 COG3899 Predicted ATPase [Gene 97.5 0.00051 1.1E-08 69.1 9.1 50 141-190 1-51 (849)
180 PRK11034 clpA ATP-dependent Cl 97.4 0.00058 1.3E-08 67.7 9.0 49 140-188 458-513 (758)
181 PRK04328 hypothetical protein; 97.4 0.0018 3.9E-08 55.8 11.1 48 151-198 11-58 (249)
182 PRK05703 flhF flagellar biosyn 97.4 0.025 5.4E-07 52.7 19.2 36 163-198 221-258 (424)
183 COG3903 Predicted ATPase [Gene 97.4 6.2E-05 1.4E-09 68.0 1.9 111 162-278 13-126 (414)
184 COG1066 Sms Predicted ATP-depe 97.4 0.0013 2.8E-08 59.7 10.2 95 147-250 77-177 (456)
185 TIGR01425 SRP54_euk signal rec 97.4 0.0074 1.6E-07 55.9 15.4 29 162-190 99-127 (429)
186 cd01124 KaiC KaiC is a circadi 97.4 0.0014 3.1E-08 53.4 9.9 33 166-198 2-34 (187)
187 KOG0735 AAA+-type ATPase [Post 97.4 0.00045 9.9E-09 66.3 7.6 75 163-252 431-505 (952)
188 PF13604 AAA_30: AAA domain; P 97.4 0.0024 5.1E-08 53.0 11.0 98 164-275 19-127 (196)
189 TIGR01420 pilT_fam pilus retra 97.4 0.00063 1.4E-08 61.5 8.1 105 163-276 122-227 (343)
190 PRK10867 signal recognition pa 97.4 0.013 2.8E-07 54.5 16.8 29 162-190 99-127 (433)
191 PRK14971 DNA polymerase III su 97.4 0.0024 5.1E-08 62.1 12.4 51 137-188 14-64 (614)
192 PF13671 AAA_33: AAA domain; P 97.4 0.0013 2.7E-08 51.2 8.7 24 165-188 1-24 (143)
193 PRK08533 flagellar accessory p 97.4 0.0014 3.1E-08 55.8 9.5 45 154-198 15-59 (230)
194 COG0593 DnaA ATPase involved i 97.4 0.0013 2.8E-08 60.2 9.7 98 162-277 112-216 (408)
195 PF13238 AAA_18: AAA domain; P 97.4 0.00015 3.3E-09 55.2 3.2 22 166-187 1-22 (129)
196 PRK10416 signal recognition pa 97.4 0.0078 1.7E-07 53.8 14.4 29 162-190 113-141 (318)
197 COG2255 RuvB Holliday junction 97.3 0.00018 4E-09 62.0 3.6 55 137-191 23-80 (332)
198 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0047 1E-07 52.3 12.3 49 150-198 7-55 (229)
199 cd03115 SRP The signal recogni 97.3 0.0026 5.6E-08 51.5 10.2 26 165-190 2-27 (173)
200 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00083 1.8E-08 52.9 7.0 98 163-278 26-126 (144)
201 cd03214 ABC_Iron-Siderophores_ 97.3 0.00072 1.6E-08 55.2 6.9 112 163-278 25-157 (180)
202 cd03247 ABCC_cytochrome_bd The 97.3 0.0016 3.4E-08 53.1 8.8 34 163-197 28-61 (178)
203 PRK04301 radA DNA repair and r 97.3 0.002 4.4E-08 57.6 10.3 49 150-198 89-143 (317)
204 TIGR00959 ffh signal recogniti 97.3 0.018 3.9E-07 53.5 16.6 27 162-188 98-124 (428)
205 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.0016 3.4E-08 53.1 8.7 23 165-187 1-23 (183)
206 PRK11823 DNA repair protein Ra 97.3 0.0019 4.2E-08 60.4 10.2 51 148-198 65-115 (446)
207 TIGR00416 sms DNA repair prote 97.3 0.0024 5.3E-08 59.8 10.7 52 147-198 78-129 (454)
208 TIGR02858 spore_III_AA stage I 97.3 0.0026 5.7E-08 55.4 10.2 110 162-278 110-228 (270)
209 cd03228 ABCC_MRP_Like The MRP 97.3 0.0012 2.6E-08 53.4 7.6 34 163-197 28-61 (171)
210 COG4608 AppF ABC-type oligopep 97.3 0.0013 2.7E-08 56.7 7.8 87 163-251 39-137 (268)
211 COG0542 clpA ATP-binding subun 97.3 0.0028 6.1E-08 62.3 11.2 51 137-189 167-217 (786)
212 cd01129 PulE-GspE PulE/GspE Th 97.3 0.0007 1.5E-08 58.9 6.5 102 149-263 69-171 (264)
213 PF00485 PRK: Phosphoribulokin 97.3 0.00026 5.7E-09 58.6 3.7 26 165-190 1-26 (194)
214 KOG2228 Origin recognition com 97.3 0.0019 4.1E-08 57.2 9.0 138 139-277 23-180 (408)
215 PF14532 Sigma54_activ_2: Sigm 97.3 0.00033 7.2E-09 54.7 4.0 46 143-188 1-46 (138)
216 PRK05707 DNA polymerase III su 97.3 0.0058 1.3E-07 54.9 12.4 27 163-189 22-48 (328)
217 PRK12723 flagellar biosynthesi 97.2 0.0052 1.1E-07 56.3 12.2 27 162-188 173-199 (388)
218 PRK12726 flagellar biosynthesi 97.2 0.018 4E-07 52.4 15.3 37 162-198 205-241 (407)
219 COG0572 Udk Uridine kinase [Nu 97.2 0.00082 1.8E-08 56.2 6.3 30 161-190 6-35 (218)
220 PF00448 SRP54: SRP54-type pro 97.2 0.0015 3.3E-08 54.2 7.9 34 164-197 2-35 (196)
221 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0013 2.8E-08 61.5 8.1 41 147-187 89-134 (634)
222 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0016 3.5E-08 52.5 7.8 112 163-278 27-147 (166)
223 TIGR00763 lon ATP-dependent pr 97.2 0.00059 1.3E-08 68.2 6.3 51 141-191 321-375 (775)
224 TIGR01243 CDC48 AAA family ATP 97.2 0.00098 2.1E-08 66.3 7.8 51 140-190 453-514 (733)
225 KOG3678 SARM protein (with ste 97.2 0.00059 1.3E-08 62.5 5.5 60 13-74 609-669 (832)
226 PRK15455 PrkA family serine pr 97.2 0.00038 8.2E-09 66.1 4.4 50 140-189 76-129 (644)
227 COG4088 Predicted nucleotide k 97.2 0.00087 1.9E-08 55.4 5.9 29 164-192 2-30 (261)
228 PF00437 T2SE: Type II/IV secr 97.2 0.00044 9.5E-09 60.3 4.4 118 147-276 111-229 (270)
229 PRK08058 DNA polymerase III su 97.2 0.0026 5.6E-08 57.2 9.3 46 142-188 7-53 (329)
230 KOG0734 AAA+-type ATPase conta 97.2 0.002 4.3E-08 60.2 8.5 112 140-274 304-442 (752)
231 PRK14722 flhF flagellar biosyn 97.2 0.0066 1.4E-07 55.3 11.8 36 163-198 137-174 (374)
232 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0015 3.2E-08 53.3 7.0 72 163-250 25-98 (177)
233 TIGR02655 circ_KaiC circadian 97.1 0.0029 6.4E-08 59.9 9.9 96 148-251 248-363 (484)
234 PF08433 KTI12: Chromatin asso 97.1 0.00032 6.9E-09 61.2 3.0 27 164-190 2-28 (270)
235 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0015 3.3E-08 61.6 7.7 50 140-189 228-285 (489)
236 cd03216 ABC_Carb_Monos_I This 97.1 0.00085 1.9E-08 53.9 5.3 109 163-278 26-141 (163)
237 PRK11608 pspF phage shock prot 97.1 0.0015 3.3E-08 58.6 7.4 47 140-186 6-52 (326)
238 PRK03839 putative kinase; Prov 97.1 0.00035 7.7E-09 57.0 3.0 24 165-188 2-25 (180)
239 PF07724 AAA_2: AAA domain (Cd 97.1 0.00053 1.1E-08 55.7 3.9 36 163-198 3-39 (171)
240 COG0466 Lon ATP-dependent Lon 97.1 0.00058 1.3E-08 65.7 4.6 53 140-192 323-379 (782)
241 PF01583 APS_kinase: Adenylyls 97.1 0.00087 1.9E-08 53.4 4.9 35 164-198 3-37 (156)
242 PRK05480 uridine/cytidine kina 97.1 0.0005 1.1E-08 57.5 3.7 27 161-187 4-30 (209)
243 PRK06762 hypothetical protein; 97.1 0.00046 1E-08 55.5 3.4 24 164-187 3-26 (166)
244 PRK08233 hypothetical protein; 97.1 0.00043 9.2E-09 56.3 3.2 26 163-188 3-28 (182)
245 COG0468 RecA RecA/RadA recombi 97.1 0.0046 9.9E-08 54.0 9.6 93 152-250 49-150 (279)
246 PRK15429 formate hydrogenlyase 97.1 0.0027 5.8E-08 62.8 9.2 49 140-188 376-424 (686)
247 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0029 6.2E-08 50.6 7.7 109 164-278 3-137 (159)
248 cd03238 ABC_UvrA The excision 97.1 0.0018 4E-08 52.8 6.7 23 163-185 21-43 (176)
249 COG3854 SpoIIIAA ncharacterize 97.1 0.0049 1.1E-07 51.9 9.1 109 163-276 137-250 (308)
250 COG1875 NYN ribonuclease and A 97.0 0.0082 1.8E-07 53.8 10.9 26 160-185 242-267 (436)
251 TIGR01817 nifA Nif-specific re 97.0 0.0033 7.1E-08 60.3 9.3 52 137-188 193-244 (534)
252 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0018 3.8E-08 58.9 7.0 95 163-262 134-233 (358)
253 PRK00131 aroK shikimate kinase 97.0 0.00051 1.1E-08 55.3 3.2 26 163-188 4-29 (175)
254 PRK00625 shikimate kinase; Pro 97.0 0.00048 1E-08 56.0 3.0 24 165-188 2-25 (173)
255 PRK09280 F0F1 ATP synthase sub 97.0 0.002 4.3E-08 60.0 7.3 87 163-252 144-249 (463)
256 PRK04040 adenylate kinase; Pro 97.0 0.00068 1.5E-08 55.9 3.9 25 164-188 3-27 (188)
257 PTZ00301 uridine kinase; Provi 97.0 0.00063 1.4E-08 57.1 3.6 28 163-190 3-30 (210)
258 TIGR03499 FlhF flagellar biosy 97.0 0.0043 9.4E-08 54.5 9.0 29 162-190 193-221 (282)
259 PF00910 RNA_helicase: RNA hel 97.0 0.00039 8.4E-09 51.8 2.0 25 166-190 1-25 (107)
260 cd02019 NK Nucleoside/nucleoti 97.0 0.00054 1.2E-08 46.8 2.6 23 165-187 1-23 (69)
261 cd03246 ABCC_Protease_Secretio 97.0 0.0019 4E-08 52.4 6.2 34 163-197 28-61 (173)
262 PRK14528 adenylate kinase; Pro 97.0 0.0041 8.9E-08 51.1 8.3 23 165-187 3-25 (186)
263 PF07726 AAA_3: ATPase family 97.0 0.00045 9.8E-09 52.9 2.3 28 166-193 2-29 (131)
264 PRK05022 anaerobic nitric oxid 97.0 0.0026 5.6E-08 60.7 8.0 51 138-188 185-235 (509)
265 PF14516 AAA_35: AAA-like doma 97.0 0.016 3.4E-07 52.2 12.7 112 137-253 8-139 (331)
266 COG0563 Adk Adenylate kinase a 97.0 0.0032 6.9E-08 51.4 7.5 23 165-187 2-24 (178)
267 COG0541 Ffh Signal recognition 97.0 0.17 3.8E-06 46.5 19.0 29 161-189 98-126 (451)
268 PRK10463 hydrogenase nickel in 97.0 0.0065 1.4E-07 53.3 9.7 36 161-196 102-137 (290)
269 TIGR03600 phage_DnaB phage rep 97.0 0.046 1E-06 50.8 16.0 71 142-220 174-245 (421)
270 cd01122 GP4d_helicase GP4d_hel 97.0 0.014 3E-07 50.8 11.8 36 163-198 30-66 (271)
271 PRK13947 shikimate kinase; Pro 97.0 0.00058 1.2E-08 55.1 2.9 26 165-190 3-28 (171)
272 PF00406 ADK: Adenylate kinase 97.0 0.0013 2.7E-08 52.1 4.8 86 168-261 1-94 (151)
273 TIGR00235 udk uridine kinase. 97.0 0.00087 1.9E-08 56.1 4.0 28 161-188 4-31 (207)
274 PRK08972 fliI flagellum-specif 97.0 0.0022 4.8E-08 59.3 6.9 84 163-252 162-263 (444)
275 TIGR01360 aden_kin_iso1 adenyl 97.0 0.0007 1.5E-08 55.3 3.3 26 162-187 2-27 (188)
276 cd01135 V_A-ATPase_B V/A-type 96.9 0.0049 1.1E-07 53.6 8.6 87 163-253 69-178 (276)
277 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0016 3.5E-08 56.5 5.7 38 161-198 34-71 (259)
278 cd03229 ABC_Class3 This class 96.9 0.0015 3.2E-08 53.3 5.1 34 163-197 26-59 (178)
279 TIGR02236 recomb_radA DNA repa 96.9 0.0064 1.4E-07 54.1 9.5 48 151-198 83-136 (310)
280 TIGR02974 phageshock_pspF psp 96.9 0.004 8.6E-08 56.0 8.2 47 142-188 1-47 (329)
281 PRK12727 flagellar biosynthesi 96.9 0.024 5.2E-07 53.8 13.6 28 163-190 350-377 (559)
282 cd01130 VirB11-like_ATPase Typ 96.9 0.0013 2.8E-08 54.1 4.7 95 163-260 25-119 (186)
283 COG0467 RAD55 RecA-superfamily 96.9 0.0034 7.5E-08 54.4 7.6 46 153-198 13-58 (260)
284 PRK12597 F0F1 ATP synthase sub 96.9 0.004 8.8E-08 58.1 8.4 86 163-252 143-248 (461)
285 PLN03186 DNA repair protein RA 96.9 0.0083 1.8E-07 54.1 10.2 51 148-198 108-164 (342)
286 TIGR01039 atpD ATP synthase, F 96.9 0.0031 6.8E-08 58.6 7.6 88 163-253 143-249 (461)
287 PF00006 ATP-synt_ab: ATP synt 96.9 0.0012 2.7E-08 55.5 4.5 84 164-253 16-117 (215)
288 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0037 8E-08 53.8 7.7 26 165-190 1-26 (249)
289 TIGR02238 recomb_DMC1 meiotic 96.9 0.011 2.4E-07 52.7 10.8 49 150-198 83-137 (313)
290 cd03232 ABC_PDR_domain2 The pl 96.9 0.0046 9.9E-08 51.0 7.8 24 163-186 33-56 (192)
291 PRK06547 hypothetical protein; 96.9 0.0014 3.1E-08 53.2 4.7 27 161-187 13-39 (172)
292 PTZ00088 adenylate kinase 1; P 96.9 0.0045 9.8E-08 52.7 7.9 23 165-187 8-30 (229)
293 PRK14527 adenylate kinase; Pro 96.9 0.0047 1E-07 50.9 7.8 25 163-187 6-30 (191)
294 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0022 4.7E-08 51.1 5.5 106 163-278 25-139 (157)
295 PF03969 AFG1_ATPase: AFG1-lik 96.9 0.0022 4.8E-08 58.3 6.1 100 162-276 61-165 (362)
296 PRK00889 adenylylsulfate kinas 96.9 0.0017 3.7E-08 52.6 4.8 27 163-189 4-30 (175)
297 COG0488 Uup ATPase components 96.8 0.0034 7.3E-08 59.8 7.4 26 163-188 348-373 (530)
298 PRK07399 DNA polymerase III su 96.8 0.021 4.6E-07 50.9 12.1 48 140-188 4-51 (314)
299 PRK08356 hypothetical protein; 96.8 0.0066 1.4E-07 50.2 8.3 21 164-184 6-26 (195)
300 PRK08927 fliI flagellum-specif 96.8 0.0051 1.1E-07 57.1 8.2 85 162-252 157-259 (442)
301 PRK00279 adk adenylate kinase; 96.8 0.0055 1.2E-07 51.5 7.9 23 165-187 2-24 (215)
302 PRK10733 hflB ATP-dependent me 96.8 0.002 4.4E-08 63.0 5.8 27 164-190 186-212 (644)
303 PRK08506 replicative DNA helic 96.8 0.02 4.2E-07 54.1 12.2 72 142-221 172-243 (472)
304 cd02028 UMPK_like Uridine mono 96.8 0.0015 3.2E-08 53.4 4.1 25 165-189 1-25 (179)
305 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.0076 1.6E-07 51.9 8.7 25 163-187 25-49 (246)
306 cd00544 CobU Adenosylcobinamid 96.8 0.0095 2.1E-07 48.2 8.7 76 166-250 2-82 (169)
307 KOG0780 Signal recognition par 96.8 0.079 1.7E-06 48.0 15.0 38 161-198 99-136 (483)
308 TIGR02868 CydC thiol reductant 96.8 0.006 1.3E-07 58.4 8.8 26 162-187 360-385 (529)
309 PF03205 MobB: Molybdopterin g 96.8 0.0021 4.6E-08 50.4 4.7 35 164-198 1-36 (140)
310 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0059 1.3E-07 49.5 7.5 34 163-197 26-59 (173)
311 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0069 1.5E-07 52.0 8.1 47 230-278 146-198 (254)
312 PRK03846 adenylylsulfate kinas 96.8 0.0021 4.6E-08 53.3 5.0 37 161-197 22-58 (198)
313 TIGR02788 VirB11 P-type DNA tr 96.8 0.0028 6.1E-08 56.4 6.0 93 163-259 144-236 (308)
314 cd00227 CPT Chloramphenicol (C 96.8 0.0012 2.6E-08 53.7 3.3 25 164-188 3-27 (175)
315 TIGR02782 TrbB_P P-type conjug 96.8 0.0028 6E-08 56.2 5.9 89 164-260 133-223 (299)
316 PTZ00035 Rad51 protein; Provis 96.8 0.02 4.3E-07 51.6 11.4 39 150-188 105-143 (337)
317 cd02027 APSK Adenosine 5'-phos 96.8 0.015 3.3E-07 45.9 9.6 25 165-189 1-25 (149)
318 cd03217 ABC_FeS_Assembly ABC-t 96.8 0.0046 9.9E-08 51.4 6.8 24 163-186 26-49 (200)
319 PRK13531 regulatory ATPase Rav 96.8 0.0014 2.9E-08 61.4 3.9 46 140-189 20-65 (498)
320 PRK09270 nucleoside triphospha 96.8 0.0021 4.6E-08 54.6 4.9 30 161-190 31-60 (229)
321 KOG1969 DNA replication checkp 96.8 0.0047 1E-07 59.8 7.5 74 161-253 324-399 (877)
322 PRK12724 flagellar biosynthesi 96.8 0.013 2.9E-07 54.0 10.2 25 163-187 223-247 (432)
323 TIGR01351 adk adenylate kinase 96.8 0.0069 1.5E-07 50.7 7.9 22 166-187 2-23 (210)
324 PRK11388 DNA-binding transcrip 96.8 0.0028 6.1E-08 62.1 6.3 50 138-187 323-372 (638)
325 KOG0736 Peroxisome assembly fa 96.8 0.021 4.6E-07 55.7 11.9 72 163-253 705-776 (953)
326 PRK09519 recA DNA recombinatio 96.7 0.01 2.2E-07 58.8 9.9 94 148-251 44-148 (790)
327 KOG0739 AAA+-type ATPase [Post 96.7 0.073 1.6E-06 46.7 14.0 94 139-252 132-236 (439)
328 cd02020 CMPK Cytidine monophos 96.7 0.0011 2.3E-08 51.8 2.7 24 165-188 1-24 (147)
329 cd01132 F1_ATPase_alpha F1 ATP 96.7 0.011 2.4E-07 51.4 9.1 86 163-253 69-173 (274)
330 PLN03187 meiotic recombination 96.7 0.016 3.5E-07 52.2 10.5 49 150-198 113-167 (344)
331 PF08423 Rad51: Rad51; InterP 96.7 0.017 3.6E-07 50.1 10.3 95 150-250 25-142 (256)
332 COG2842 Uncharacterized ATPase 96.7 0.034 7.5E-07 48.5 11.9 116 137-262 69-188 (297)
333 PRK14531 adenylate kinase; Pro 96.7 0.01 2.2E-07 48.5 8.5 23 165-187 4-26 (183)
334 PRK08149 ATP synthase SpaL; Va 96.7 0.006 1.3E-07 56.4 7.8 86 162-253 150-253 (428)
335 cd00984 DnaB_C DnaB helicase C 96.7 0.022 4.7E-07 48.6 10.8 37 162-198 12-49 (242)
336 PRK13543 cytochrome c biogenes 96.7 0.012 2.6E-07 49.4 9.0 25 163-187 37-61 (214)
337 cd03213 ABCG_EPDR ABCG transpo 96.7 0.0094 2E-07 49.3 8.3 26 162-187 34-59 (194)
338 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0019 4.2E-08 54.3 4.1 24 163-186 29-52 (213)
339 PRK05800 cobU adenosylcobinami 96.7 0.019 4E-07 46.6 9.7 23 165-187 3-25 (170)
340 PF03308 ArgK: ArgK protein; 96.7 0.0049 1.1E-07 52.9 6.5 42 149-190 15-56 (266)
341 cd01125 repA Hexameric Replica 96.7 0.015 3.2E-07 49.7 9.7 24 165-188 3-26 (239)
342 PRK02496 adk adenylate kinase; 96.7 0.0072 1.6E-07 49.4 7.4 23 165-187 3-25 (184)
343 PRK08006 replicative DNA helic 96.7 0.024 5.2E-07 53.5 11.7 72 142-221 204-276 (471)
344 PRK13949 shikimate kinase; Pro 96.7 0.0013 2.8E-08 53.3 2.9 24 165-188 3-26 (169)
345 cd00464 SK Shikimate kinase (S 96.7 0.0013 2.9E-08 51.8 2.9 23 166-188 2-24 (154)
346 TIGR03305 alt_F1F0_F1_bet alte 96.7 0.0036 7.8E-08 58.2 6.1 87 163-253 138-244 (449)
347 PRK06217 hypothetical protein; 96.7 0.0012 2.6E-08 54.1 2.6 24 165-188 3-26 (183)
348 KOG0729 26S proteasome regulat 96.7 0.0096 2.1E-07 51.2 8.0 51 143-198 180-241 (435)
349 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0023 5E-08 49.6 3.9 26 163-188 22-47 (133)
350 KOG2004 Mitochondrial ATP-depe 96.7 0.0017 3.8E-08 62.5 3.8 53 140-192 411-467 (906)
351 PF03796 DnaB_C: DnaB-like hel 96.6 0.018 4E-07 49.7 10.0 67 149-223 6-73 (259)
352 cd02023 UMPK Uridine monophosp 96.6 0.0013 2.8E-08 54.5 2.6 23 165-187 1-23 (198)
353 PRK12678 transcription termina 96.6 0.0041 8.9E-08 59.1 6.2 89 163-254 416-516 (672)
354 COG5635 Predicted NTPase (NACH 96.6 0.0028 6.1E-08 63.8 5.4 110 164-278 223-347 (824)
355 COG1223 Predicted ATPase (AAA+ 96.6 0.0042 9.2E-08 53.2 5.5 50 140-189 121-177 (368)
356 cd02025 PanK Pantothenate kina 96.6 0.0013 2.9E-08 55.6 2.6 24 165-188 1-24 (220)
357 cd03215 ABC_Carb_Monos_II This 96.6 0.01 2.2E-07 48.4 7.8 25 163-187 26-50 (182)
358 cd02021 GntK Gluconate kinase 96.6 0.0014 3E-08 51.7 2.5 23 165-187 1-23 (150)
359 PF00154 RecA: recA bacterial 96.6 0.016 3.4E-07 51.7 9.3 94 148-251 37-141 (322)
360 PF03266 NTPase_1: NTPase; In 96.6 0.0023 5E-08 51.8 3.7 24 166-189 2-25 (168)
361 TIGR02322 phosphon_PhnN phosph 96.6 0.0017 3.7E-08 52.8 3.0 25 164-188 2-26 (179)
362 PRK12337 2-phosphoglycerate ki 96.6 0.004 8.7E-08 57.9 5.7 26 162-187 254-279 (475)
363 KOG0733 Nuclear AAA ATPase (VC 96.6 0.0048 1E-07 58.6 6.2 70 163-252 545-615 (802)
364 PF06745 KaiC: KaiC; InterPro 96.6 0.0033 7.2E-08 53.2 4.9 48 151-198 7-55 (226)
365 COG2274 SunT ABC-type bacterio 96.6 0.0069 1.5E-07 59.7 7.6 25 162-186 498-522 (709)
366 PRK13948 shikimate kinase; Pro 96.6 0.0018 3.8E-08 53.1 3.0 28 162-189 9-36 (182)
367 PF13481 AAA_25: AAA domain; P 96.6 0.021 4.5E-07 46.8 9.5 25 165-189 34-58 (193)
368 cd02024 NRK1 Nicotinamide ribo 96.6 0.0015 3.2E-08 53.8 2.5 23 165-187 1-23 (187)
369 PRK06936 type III secretion sy 96.6 0.0064 1.4E-07 56.4 6.8 86 162-253 161-264 (439)
370 TIGR02239 recomb_RAD51 DNA rep 96.5 0.024 5.2E-07 50.6 10.3 39 148-186 81-119 (316)
371 PRK08840 replicative DNA helic 96.5 0.036 7.8E-07 52.2 11.8 72 142-221 197-269 (464)
372 PRK06731 flhF flagellar biosyn 96.5 0.12 2.5E-06 45.2 14.1 27 163-189 75-101 (270)
373 PF00158 Sigma54_activat: Sigm 96.5 0.0024 5.2E-08 51.7 3.4 46 142-187 1-46 (168)
374 smart00534 MUTSac ATPase domai 96.5 0.0011 2.4E-08 54.5 1.4 21 165-185 1-21 (185)
375 PRK14529 adenylate kinase; Pro 96.5 0.018 3.9E-07 48.8 8.8 91 166-260 3-96 (223)
376 PRK13946 shikimate kinase; Pro 96.5 0.0019 4.1E-08 53.0 2.9 26 164-189 11-36 (184)
377 cd00071 GMPK Guanosine monopho 96.5 0.0016 3.5E-08 50.8 2.3 26 165-190 1-26 (137)
378 PRK05439 pantothenate kinase; 96.5 0.0089 1.9E-07 53.1 7.2 30 160-189 83-112 (311)
379 PRK14530 adenylate kinase; Pro 96.5 0.002 4.3E-08 54.2 2.9 23 165-187 5-27 (215)
380 PRK06002 fliI flagellum-specif 96.5 0.0083 1.8E-07 55.8 7.2 86 162-253 164-266 (450)
381 COG1703 ArgK Putative periplas 96.5 0.0034 7.3E-08 54.8 4.3 41 150-190 38-78 (323)
382 PRK14723 flhF flagellar biosyn 96.5 0.03 6.5E-07 55.4 11.2 26 163-188 185-210 (767)
383 COG2884 FtsE Predicted ATPase 96.5 0.031 6.7E-07 45.9 9.4 26 162-187 27-52 (223)
384 TIGR02525 plasmid_TraJ plasmid 96.5 0.0087 1.9E-07 54.6 7.0 95 164-262 150-246 (372)
385 PRK10751 molybdopterin-guanine 96.5 0.0036 7.9E-08 50.8 4.0 29 162-190 5-33 (173)
386 PF13086 AAA_11: AAA domain; P 96.4 0.0053 1.2E-07 51.4 5.3 36 148-187 6-41 (236)
387 PRK14721 flhF flagellar biosyn 96.4 0.04 8.6E-07 51.0 11.3 26 162-187 190-215 (420)
388 PRK09302 circadian clock prote 96.4 0.019 4.2E-07 54.7 9.6 51 148-198 258-308 (509)
389 PLN02674 adenylate kinase 96.4 0.02 4.4E-07 49.1 8.8 24 164-187 32-55 (244)
390 PRK05973 replicative DNA helic 96.4 0.012 2.6E-07 50.3 7.2 37 162-198 63-99 (237)
391 PRK14738 gmk guanylate kinase; 96.4 0.0029 6.2E-08 53.0 3.4 32 155-186 5-36 (206)
392 COG1936 Predicted nucleotide k 96.4 0.002 4.3E-08 51.8 2.2 20 165-184 2-21 (180)
393 PRK10820 DNA-binding transcrip 96.4 0.02 4.3E-07 54.8 9.4 51 137-187 201-251 (520)
394 COG0703 AroK Shikimate kinase 96.4 0.0026 5.5E-08 51.4 2.9 27 165-191 4-30 (172)
395 cd01136 ATPase_flagellum-secre 96.4 0.011 2.3E-07 53.0 7.1 85 163-253 69-171 (326)
396 PRK10875 recD exonuclease V su 96.4 0.023 4.9E-07 55.3 9.8 26 164-189 168-193 (615)
397 COG1102 Cmk Cytidylate kinase 96.4 0.0026 5.6E-08 50.6 2.8 24 165-188 2-25 (179)
398 TIGR01313 therm_gnt_kin carboh 96.4 0.002 4.4E-08 51.5 2.2 22 166-187 1-22 (163)
399 TIGR01447 recD exodeoxyribonuc 96.4 0.016 3.5E-07 56.0 8.7 26 164-189 161-186 (586)
400 PRK05057 aroK shikimate kinase 96.4 0.0027 5.9E-08 51.5 2.9 25 164-188 5-29 (172)
401 PRK09435 membrane ATPase/prote 96.4 0.0078 1.7E-07 54.0 6.1 40 151-190 44-83 (332)
402 TIGR00390 hslU ATP-dependent p 96.4 0.0033 7.2E-08 57.8 3.7 28 163-190 47-74 (441)
403 TIGR02533 type_II_gspE general 96.4 0.0076 1.6E-07 57.0 6.2 91 163-262 242-332 (486)
404 TIGR00764 lon_rel lon-related 96.4 0.007 1.5E-07 58.8 6.1 58 139-200 17-75 (608)
405 PRK12339 2-phosphoglycerate ki 96.4 0.0033 7.3E-08 52.2 3.4 25 163-187 3-27 (197)
406 PRK04182 cytidylate kinase; Pr 96.4 0.0029 6.3E-08 51.2 3.0 24 165-188 2-25 (180)
407 PRK13975 thymidylate kinase; P 96.3 0.0033 7.1E-08 51.8 3.3 26 164-189 3-28 (196)
408 PRK03731 aroL shikimate kinase 96.3 0.0028 6.1E-08 51.1 2.9 24 165-188 4-27 (171)
409 PRK14526 adenylate kinase; Pro 96.3 0.026 5.7E-07 47.4 8.7 22 166-187 3-24 (211)
410 PHA02774 E1; Provisional 96.3 0.03 6.5E-07 53.5 9.9 40 148-188 420-459 (613)
411 PRK05201 hslU ATP-dependent pr 96.3 0.0046 1E-07 56.9 4.4 51 140-190 15-77 (443)
412 PRK00300 gmk guanylate kinase; 96.3 0.0031 6.7E-08 52.4 3.1 26 163-188 5-30 (205)
413 TIGR03263 guanyl_kin guanylate 96.3 0.0025 5.4E-08 51.8 2.4 24 164-187 2-25 (180)
414 PRK14493 putative bifunctional 96.3 0.0049 1.1E-07 53.9 4.4 34 164-198 2-35 (274)
415 PRK05537 bifunctional sulfate 96.3 0.0058 1.2E-07 58.9 5.2 48 142-189 371-418 (568)
416 TIGR01041 ATP_syn_B_arch ATP s 96.3 0.016 3.5E-07 54.2 7.9 88 163-253 141-250 (458)
417 PF00625 Guanylate_kin: Guanyl 96.3 0.0036 7.8E-08 51.2 3.3 35 163-197 2-36 (183)
418 PF13521 AAA_28: AAA domain; P 96.3 0.0033 7.2E-08 50.3 3.0 21 166-186 2-22 (163)
419 TIGR00073 hypB hydrogenase acc 96.3 0.0062 1.3E-07 50.9 4.7 30 160-189 19-48 (207)
420 COG0464 SpoVK ATPases of the A 96.3 0.0043 9.4E-08 58.9 4.2 30 162-191 275-304 (494)
421 COG0305 DnaB Replicative DNA h 96.3 0.14 3.1E-06 47.5 13.8 124 117-253 154-289 (435)
422 KOG1532 GTPase XAB1, interacts 96.3 0.0053 1.1E-07 52.9 4.2 32 162-193 18-49 (366)
423 PRK05922 type III secretion sy 96.3 0.014 3E-07 54.1 7.2 85 163-253 157-259 (434)
424 PTZ00494 tuzin-like protein; P 96.3 0.13 2.9E-06 47.8 13.2 105 90-198 301-427 (664)
425 PRK13808 adenylate kinase; Pro 96.3 0.02 4.4E-07 51.2 8.0 22 166-187 3-24 (333)
426 PLN02200 adenylate kinase fami 96.3 0.004 8.7E-08 53.2 3.4 25 163-187 43-67 (234)
427 COG1428 Deoxynucleoside kinase 96.2 0.0036 7.9E-08 51.9 3.0 26 163-188 4-29 (216)
428 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.021 4.6E-07 48.2 7.8 48 151-198 4-51 (224)
429 PF12775 AAA_7: P-loop contain 96.2 0.0025 5.3E-08 55.7 2.1 25 164-188 34-58 (272)
430 TIGR02902 spore_lonB ATP-depen 96.2 0.0057 1.2E-07 58.6 4.7 48 138-187 63-110 (531)
431 PRK07004 replicative DNA helic 96.2 0.074 1.6E-06 50.1 12.0 70 143-220 194-264 (460)
432 TIGR00455 apsK adenylylsulfate 96.2 0.04 8.7E-07 45.0 9.1 28 162-189 17-44 (184)
433 TIGR03496 FliI_clade1 flagella 96.2 0.011 2.4E-07 54.7 6.3 85 162-252 136-238 (411)
434 PRK15453 phosphoribulokinase; 96.2 0.0076 1.7E-07 52.6 4.9 28 162-189 4-31 (290)
435 TIGR00554 panK_bact pantothena 96.2 0.0072 1.6E-07 53.2 4.9 28 161-188 60-87 (290)
436 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.0048 1E-07 52.2 3.6 24 162-185 30-53 (222)
437 KOG0651 26S proteasome regulat 96.2 0.009 1.9E-07 52.5 5.2 30 162-191 165-194 (388)
438 TIGR03522 GldA_ABC_ATP gliding 96.2 0.043 9.2E-07 48.7 9.8 25 162-186 27-51 (301)
439 KOG0727 26S proteasome regulat 96.2 0.0051 1.1E-07 52.5 3.6 50 142-191 157-217 (408)
440 cd01428 ADK Adenylate kinase ( 96.2 0.0037 8E-08 51.3 2.8 22 166-187 2-23 (194)
441 PHA02244 ATPase-like protein 96.2 0.0046 9.9E-08 56.0 3.5 46 140-189 96-145 (383)
442 PF06068 TIP49: TIP49 C-termin 96.2 0.009 1.9E-07 53.9 5.3 58 138-195 22-82 (398)
443 PLN02318 phosphoribulokinase/u 96.2 0.0058 1.3E-07 58.5 4.3 34 154-187 56-89 (656)
444 COG0488 Uup ATPase components 96.2 0.014 3.1E-07 55.6 7.0 27 163-189 29-55 (530)
445 PRK14532 adenylate kinase; Pro 96.2 0.0037 8.1E-08 51.2 2.7 22 166-187 3-24 (188)
446 COG0465 HflB ATP-dependent Zn 96.2 0.014 3E-07 56.0 6.8 115 138-274 148-291 (596)
447 TIGR00708 cobA cob(I)alamin ad 96.2 0.049 1.1E-06 44.1 9.1 107 164-278 6-139 (173)
448 cd03300 ABC_PotA_N PotA is an 96.2 0.031 6.7E-07 47.5 8.4 25 163-187 26-50 (232)
449 TIGR02655 circ_KaiC circadian 96.2 0.017 3.8E-07 54.7 7.5 48 151-198 9-57 (484)
450 PRK07196 fliI flagellum-specif 96.2 0.014 3.1E-07 54.1 6.7 26 162-187 154-179 (434)
451 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0043 9.4E-08 49.8 3.0 23 165-187 2-24 (171)
452 KOG0743 AAA+-type ATPase [Post 96.2 0.016 3.4E-07 53.4 6.8 26 163-188 235-260 (457)
453 TIGR00176 mobB molybdopterin-g 96.2 0.0063 1.4E-07 48.6 3.8 32 165-196 1-33 (155)
454 PRK10078 ribose 1,5-bisphospho 96.1 0.0031 6.7E-08 51.8 2.1 23 165-187 4-26 (186)
455 CHL00060 atpB ATP synthase CF1 96.1 0.039 8.5E-07 51.8 9.6 88 162-253 160-274 (494)
456 PRK05748 replicative DNA helic 96.1 0.075 1.6E-06 49.9 11.6 70 143-220 184-254 (448)
457 PF03029 ATP_bind_1: Conserved 96.1 0.0057 1.2E-07 52.4 3.7 23 168-190 1-23 (238)
458 PRK13764 ATPase; Provisional 96.1 0.02 4.2E-07 55.3 7.7 85 164-259 258-342 (602)
459 KOG3347 Predicted nucleotide k 96.1 0.0042 9.1E-08 48.7 2.6 24 163-186 7-30 (176)
460 PRK13768 GTPase; Provisional 96.1 0.0084 1.8E-07 51.8 4.8 27 164-190 3-29 (253)
461 COG0003 ArsA Predicted ATPase 96.1 0.011 2.3E-07 52.8 5.6 35 163-197 2-36 (322)
462 PF06309 Torsin: Torsin; Inte 96.1 0.0098 2.1E-07 45.5 4.5 47 142-188 27-78 (127)
463 COG0714 MoxR-like ATPases [Gen 96.1 0.0074 1.6E-07 54.2 4.6 49 141-193 25-73 (329)
464 TIGR00750 lao LAO/AO transport 96.1 0.014 3E-07 51.8 6.2 30 160-189 31-60 (300)
465 PRK05342 clpX ATP-dependent pr 96.1 0.0069 1.5E-07 56.0 4.4 27 164-190 109-135 (412)
466 COG1124 DppF ABC-type dipeptid 96.1 0.0051 1.1E-07 52.1 3.2 24 163-186 33-56 (252)
467 PRK06871 DNA polymerase III su 96.1 0.085 1.8E-06 47.3 11.2 38 150-188 12-49 (325)
468 PRK13765 ATP-dependent proteas 96.1 0.0084 1.8E-07 58.4 5.1 74 137-220 28-102 (637)
469 PF08477 Miro: Miro-like prote 96.1 0.0048 1E-07 46.3 2.8 22 166-187 2-23 (119)
470 PRK05688 fliI flagellum-specif 96.1 0.035 7.6E-07 51.7 8.9 86 162-253 167-270 (451)
471 TIGR01650 PD_CobS cobaltochela 96.1 0.013 2.8E-07 52.3 5.8 46 142-191 47-92 (327)
472 KOG0738 AAA+-type ATPase [Post 96.1 0.0092 2E-07 53.9 4.8 53 137-189 209-271 (491)
473 PF09848 DUF2075: Uncharacteri 96.1 0.031 6.7E-07 50.7 8.4 35 164-198 2-38 (352)
474 COG1224 TIP49 DNA helicase TIP 96.1 0.013 2.8E-07 52.4 5.6 54 137-190 36-92 (450)
475 TIGR02768 TraA_Ti Ti-type conj 96.1 0.031 6.7E-07 55.8 9.0 27 164-190 369-395 (744)
476 KOG1051 Chaperone HSP104 and r 96.1 0.085 1.8E-06 52.9 11.9 101 141-254 563-673 (898)
477 PRK10787 DNA-binding ATP-depen 96.0 0.0064 1.4E-07 60.8 4.1 52 140-191 322-377 (784)
478 CHL00059 atpA ATP synthase CF1 96.0 0.044 9.5E-07 51.4 9.3 86 163-253 141-245 (485)
479 PRK09302 circadian clock prote 96.0 0.033 7.1E-07 53.1 8.8 53 146-198 14-67 (509)
480 PRK07594 type III secretion sy 96.0 0.013 2.8E-07 54.4 5.7 86 162-253 154-257 (433)
481 PHA02530 pseT polynucleotide k 96.0 0.0053 1.2E-07 54.2 3.2 24 164-187 3-26 (300)
482 PRK13657 cyclic beta-1,2-gluca 96.0 0.015 3.2E-07 56.5 6.5 26 162-187 360-385 (588)
483 cd01672 TMPK Thymidine monopho 96.0 0.0093 2E-07 48.9 4.4 26 165-190 2-27 (200)
484 COG1763 MobB Molybdopterin-gua 96.0 0.0092 2E-07 47.8 4.2 29 163-191 2-30 (161)
485 PRK08699 DNA polymerase III su 96.0 0.092 2E-06 47.1 11.1 26 163-188 21-46 (325)
486 TIGR03324 alt_F1F0_F1_al alter 96.0 0.034 7.4E-07 52.3 8.5 86 162-253 161-266 (497)
487 TIGR03498 FliI_clade3 flagella 96.0 0.013 2.7E-07 54.3 5.6 85 163-253 140-242 (418)
488 PRK13409 putative ATPase RIL; 96.0 0.028 6E-07 54.6 8.2 25 163-187 365-389 (590)
489 KOG0066 eIF2-interacting prote 96.0 0.028 6E-07 51.8 7.5 25 163-187 613-637 (807)
490 PLN02348 phosphoribulokinase 96.0 0.0098 2.1E-07 54.3 4.7 30 160-189 46-75 (395)
491 PRK10436 hypothetical protein; 96.0 0.018 4E-07 54.0 6.7 101 149-261 207-307 (462)
492 PF03215 Rad17: Rad17 cell cyc 96.0 0.008 1.7E-07 57.2 4.3 54 142-197 21-77 (519)
493 cd03243 ABC_MutS_homologs The 96.0 0.0044 9.6E-08 51.5 2.3 22 164-185 30-51 (202)
494 KOG0652 26S proteasome regulat 96.0 0.097 2.1E-06 45.1 10.3 49 141-189 172-231 (424)
495 PRK11174 cysteine/glutathione 96.0 0.015 3.2E-07 56.4 6.3 34 162-197 375-408 (588)
496 COG0194 Gmk Guanylate kinase [ 96.0 0.0071 1.5E-07 49.3 3.3 25 163-187 4-28 (191)
497 cd03116 MobB Molybdenum is an 96.0 0.011 2.5E-07 47.3 4.5 27 164-190 2-28 (159)
498 COG0529 CysC Adenylylsulfate k 96.0 0.014 2.9E-07 47.3 4.8 90 161-250 21-129 (197)
499 KOG0058 Peptide exporter, ABC 96.0 0.015 3.4E-07 56.3 6.1 25 162-186 493-517 (716)
500 COG4133 CcmA ABC-type transpor 96.0 0.05 1.1E-06 44.6 8.1 44 232-277 139-188 (209)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-55 Score=449.69 Aligned_cols=274 Identities=35% Similarity=0.592 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCCCCCceeEEEeccccccccCchHHHHHHHhhCCCceeecCcccCCccchHHHHHHHHHhHHHH------
Q 047481 1 MAAYSSSSPSSPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDDQLNRGDEISQSLLDAIEASAISR------ 74 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~~l~~g~~i~~~l~~ai~~s~~~i------ 74 (279)
||||| |+++.|+|||||||||+|||++|++|||++|.++||.+|+|+++++|+.|++++++||++|+++|
T Consensus 1 ~~~~~----~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ 76 (1153)
T PLN03210 1 MASSS----SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKN 76 (1153)
T ss_pred CCCCC----CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCC
Confidence 56653 34467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------HHHHH-----------------------------HHHHhhh-----chHHHHHHHHHHHHhhcccccCCCC
Q 047481 75 ---------EMANW-----------------------------LEERFKE-----NSEKLQTWRNALKEAADLSGFHSQN 111 (279)
Q Consensus 75 ---------EL~~i-----------------------------~~~~~~~-----~~~~~~~wr~al~~~a~l~g~~~~~ 111 (279)
||++| |++.|.+ ..+++++||+||++||+++||++.+
T Consensus 77 ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 77 YASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred cccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCC
Confidence 99999 4444432 3478999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcccccCCCCCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 112 IRPESELVREVVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 112 ~~~e~~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
+..|+++|++|+++|++++...++ .....++||+.+++++..+|..+.+++++|+||||||+||||||+.+|+++..+|
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~-~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPS-NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccC-cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 888999999999999999988776 7888999999999999999988788899999999999999999999999999999
Q ss_pred CceEEEeec--ccc---cCC----C-CCHHHHHHHHHHHHhcCCCchh-hHHHHHHHhCCCcEEEEEeCCCChHHHHHHh
Q 047481 192 EGSCFLQNV--REE---SQR----P-GGLGCLQQKLLSKLLQDHNVIP-DIALSFRRLSSRKFLIVLDDVTCFKQIKSLI 260 (279)
Q Consensus 192 ~~~~~~~~~--~~~---~~~----~-~~~~~l~~~ll~~l~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 260 (279)
+..+|+.+. ... ... . .....++.+++.++....+... ....++++|+++|+||||||||+..+|+.+.
T Consensus 236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 999998642 111 000 0 1124567777777765533221 2356888999999999999999999999999
Q ss_pred hcCCCCCCCeEEEEEeccC
Q 047481 261 RSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 261 ~~~~~~~~gsrIiiTTR~~ 279 (279)
....|+++||+||||||++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred hhCccCCCCcEEEEEeCcH
Confidence 9888999999999999984
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=99.97 E-value=4.6e-31 Score=211.41 Aligned_cols=124 Identities=27% Similarity=0.405 Sum_probs=108.2
Q ss_pred CCCCCCCceeEEEeccccccccCchHHHHHHHhhCCCceeecC-cccCCccchHHHHHHHHHhHHHH-------------
Q 047481 9 PSSPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDD-QLNRGDEISQSLLDAIEASAISR------------- 74 (279)
Q Consensus 9 ~~~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i------------- 74 (279)
+|+++..+|||||||||+|+|++|++|||++|+++||+||+|+ ++++|+.|.+.+.+||++|+++|
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 4455667899999999999999999999999999999999999 99999999999999999999999
Q ss_pred --HHHHHHHH--------------------HhhhchHHHHHHHHHHHHhhcccccCCCC-CChhHHHHHHHHHHHhhccc
Q 047481 75 --EMANWLEE--------------------RFKENSEKLQTWRNALKEAADLSGFHSQN-IRPESELVREVVNQILKRLA 131 (279)
Q Consensus 75 --EL~~i~~~--------------------~~~~~~~~~~~wr~al~~~a~l~g~~~~~-~~~e~~~i~~iv~~i~~~l~ 131 (279)
||++|.+. ......+++++||+||++|++++|+++.. ..+|+++|++|++.|.+.|.
T Consensus 99 LdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 99 LHELALIMESKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHcCCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999221 11224578999999999999999998764 34599999999999998875
Q ss_pred c
Q 047481 132 E 132 (279)
Q Consensus 132 ~ 132 (279)
.
T Consensus 179 ~ 179 (187)
T PLN03194 179 E 179 (187)
T ss_pred H
Confidence 4
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.90 E-value=1.1e-23 Score=185.06 Aligned_cols=130 Identities=28% Similarity=0.428 Sum_probs=103.3
Q ss_pred cchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH--hhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHh
Q 047481 145 VESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN--ISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLL 222 (279)
Q Consensus 145 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 222 (279)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+. ... ......+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~-~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSK-NPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES--SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccc-cccccccccccccccc
Confidence 688999999999876678999999999999999999999998 788899999987 333 4555888888988887
Q ss_pred cC-------CCchhhHHHHHHHhCCCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEeccC
Q 047481 223 QD-------HNVIPDIALSFRRLSSRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 223 ~~-------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
.. .+.......+.+.|+++++||||||||+...|+.+...++.+..||+||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCG
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccc
Confidence 65 2345677889999999999999999999999988888777777899999999974
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=4e-22 Score=196.73 Aligned_cols=130 Identities=29% Similarity=0.410 Sum_probs=116.5
Q ss_pred cccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh---hcCCCceEEEeecccccCCCCCHHHHHHHHHH
Q 047481 143 VGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI---SSNFEGSCFLQNVREESQRPGGLGCLQQKLLS 219 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 219 (279)
||.+..++.+.+.|..++ .++++|+||||+||||||++++++. ..+|+..+|+. +++ .+....++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHHH
Confidence 999999999999998544 3899999999999999999999974 57899999999 888 9999999999999
Q ss_pred HHhcC------CCchhhHHHHHHHhCCCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEeccC
Q 047481 220 KLLQD------HNVIPDIALSFRRLSSRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 220 ~l~~~------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
.++.. ...+.....+.+.|.+||+||||||||+..+|+.+..++|....||+|++|||++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~ 299 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSE 299 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccH
Confidence 88764 1234677889999999999999999999999999999999778899999999984
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=6.4e-10 Score=102.18 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCCCCCCCccccchhhHHHHHhhccC--CCCeEEEEEeecccchHHHHHHHHHHHhhcCCC--ceEEEeecccccCCCCC
Q 047481 134 SPCSNKNPLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIGKTTIARAIFNNISSNFE--GSCFLQNVREESQRPGG 209 (279)
Q Consensus 134 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~ 209 (279)
.|...|..++||+.++++|...|... ....+.+.|+|++|+|||++++.+++++..... ..+++. . .. ..+
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~-~~~ 98 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QI-DRT 98 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---Cc-CCC
Confidence 33356788999999999999998542 233456789999999999999999998765542 233332 2 22 345
Q ss_pred HHHHHHHHHHHHhcC------CCchhhHHHHHHHhC--CCcEEEEEeCCCCh
Q 047481 210 LGCLQQKLLSKLLQD------HNVIPDIALSFRRLS--SRKFLIVLDDVTCF 253 (279)
Q Consensus 210 ~~~l~~~ll~~l~~~------~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 253 (279)
...+...++.++... .+.......+.+.+. +++++||||+++..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 567778888887652 123444566666664 45789999999765
No 6
>PF05729 NACHT: NACHT domain
Probab=99.10 E-value=6.4e-10 Score=89.14 Aligned_cols=111 Identities=22% Similarity=0.296 Sum_probs=63.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCC-----ceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHH-H
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFE-----GSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFR-R 237 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~-~ 237 (279)
+++.|+|.+|+||||+++.++.++..... ...++...+.... ......+...+......... .....+.. .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPESIA--PIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccchh--hhHHHHHHHH
Confidence 47899999999999999999998765432 2233333433333 22222344333333322211 11112222 2
Q ss_pred hCCCcEEEEEeCCCChHH-------------HHHHhhcCCCCCCCeEEEEEeccC
Q 047481 238 LSSRKFLIVLDDVTCFKQ-------------IKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 238 l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
...++++||||++|+... +..+... ...+++++|||+|..
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPR 130 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCC
Confidence 357899999999975432 2223322 124689999999963
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=2.3e-09 Score=97.52 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=76.9
Q ss_pred CCCCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCC------ceEEEeecccccCCCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFE------GSCFLQNVREESQRPG 208 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~~~ 208 (279)
..|..++||+.++++|...|.. .+...+.+.|+|++|+|||++++.+++++....+ ..+++. ... ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~-~~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQI-LD 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCC-CC
Confidence 5667899999999999999864 2233557899999999999999999998754322 123333 122 34
Q ss_pred CHHHHHHHHHHHHhc--C------CCchhhHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 209 GLGCLQQKLLSKLLQ--D------HNVIPDIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 209 ~~~~l~~~ll~~l~~--~------~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
+...+...++.++.. . .+..+....+.+.+ .+++++||||+++..
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 556777888887742 1 11223344455555 356899999999876
No 8
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.98 E-value=9.4e-09 Score=79.94 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=68.9
Q ss_pred cccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHh
Q 047481 143 VGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLL 222 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 222 (279)
.|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+...-...+++. ...... ........ ..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~----~~~~~~~~-~~-- 70 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLE----GLVVAELF-GH-- 70 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhh----hhHHHHHh-hh--
Confidence 36778888888887642 3457889999999999999999998754333334443 211111 00000000 00
Q ss_pred cCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--H---HHHHHhhcCCCC---CCCeEEEEEecc
Q 047481 223 QDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--K---QIKSLIRSHDWY---MAESRIIITTRN 278 (279)
Q Consensus 223 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~---~~~~l~~~~~~~---~~gsrIiiTTR~ 278 (279)
. ............++.+|++||++.. . .+..+....... ..+..||+||.+
T Consensus 71 ---~--~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 71 ---F--LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred ---h--hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 0 0111112233457889999999854 2 233333333221 367888888764
No 9
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.86 E-value=1.7e-08 Score=77.83 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-----CCceEEEeecccccCCCCCHHHHHHHHHHHHhcCC----CchhhHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-----FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDH----NVIPDIAL 233 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~----~~~~~~~~ 233 (279)
-+.+.|+|.+|+|||++++.+++..... -...+|+. ... ..+...+...++..+.... +.......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPS-SRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHH-HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCC-CCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4578999999999999999999986542 22344554 222 3467889999999888763 23555567
Q ss_pred HHHHhCCC-cEEEEEeCCCCh---HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 234 SFRRLSSR-KFLIVLDDVTCF---KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 234 l~~~l~~k-~~LlVlDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+.+.+... ..+|||||++.. ..++.+....+ ..+.++|++.+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77777654 459999999765 23455544444 667788886543
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.3e-08 Score=90.91 Aligned_cols=111 Identities=26% Similarity=0.416 Sum_probs=72.9
Q ss_pred CCccccchhhH---HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 140 NPLVGVESRVE---EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 140 ~~~vGr~~~~~---~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
+.++|.+.-+. -|..++. .+.+....+||+||+||||||+.++......|....=+ ..++.++...
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLREI 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHHH
Confidence 45666655442 2344444 34566777999999999999999999876665421111 2344444322
Q ss_pred HHHHHhcCCCchhhHHHH-HHHhCCCcEEEEEeCCC--ChHHHHHHhhcCCCCCCCeEEEE--Eecc
Q 047481 217 LLSKLLQDHNVIPDIALS-FRRLSSRKFLIVLDDVT--CFKQIKSLIRSHDWYMAESRIII--TTRN 278 (279)
Q Consensus 217 ll~~l~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~ 278 (279)
+ +.. +....+++.+|+||.|. +..|-+.|++... .|.-|+| ||-|
T Consensus 93 ~--------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTEN 142 (436)
T COG2256 93 I--------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTEN 142 (436)
T ss_pred H--------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCC
Confidence 2 222 33445899999999994 5678888888875 6887777 7765
No 11
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.84 E-value=4.5e-09 Score=85.89 Aligned_cols=50 Identities=32% Similarity=0.514 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHhhcc-CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 141 PLVGVESRVEEIESLLGA-ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.|+||+.+++++...|.. .....+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 34457899999999999999999999987766
No 12
>PTZ00202 tuzin; Provisional
Probab=98.80 E-value=7.9e-08 Score=87.54 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=93.9
Q ss_pred HHHHHHHHHHh-------------hcccccCCCCCChhH--HHHHHHHHHHhhcccc------cCCCCCCCCccccchhh
Q 047481 91 LQTWRNALKEA-------------ADLSGFHSQNIRPES--ELVREVVNQILKRLAE------VSPCSNKNPLVGVESRV 149 (279)
Q Consensus 91 ~~~wr~al~~~-------------a~l~g~~~~~~~~e~--~~i~~iv~~i~~~l~~------~~~~~~~~~~vGr~~~~ 149 (279)
-+.||.++++- +..-||.+++...+. -..+-.++...+.+++ ..| .+...|+||+.++
T Consensus 193 erd~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lP-a~~~~FVGReaEl 271 (550)
T PTZ00202 193 ERDFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAP-AVIRQFVSREAEE 271 (550)
T ss_pred hhhhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCC-CCccCCCCcHHHH
Confidence 44677766532 233357777765432 2333444555555444 234 6778999999999
Q ss_pred HHHHHhhccCC-CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCc-
Q 047481 150 EEIESLLGAES-KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNV- 227 (279)
Q Consensus 150 ~~l~~~L~~~~-~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~- 227 (279)
.+|...|...+ ...+++.|.|++|+|||||++.+..... ...++.|. .+...+...++..++.....
T Consensus 272 a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~ 340 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEA 340 (550)
T ss_pred HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCccc
Confidence 99999997533 3356889999999999999999997654 23555433 25688889999998854222
Q ss_pred -hhhHHHHHHHh-----C-CCcEEEEEe
Q 047481 228 -IPDIALSFRRL-----S-SRKFLIVLD 248 (279)
Q Consensus 228 -~~~~~~l~~~l-----~-~k~~LlVlD 248 (279)
......+.+.+ . +++.+||+-
T Consensus 341 k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 341 CGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 22333333332 3 667777754
No 13
>PF13173 AAA_14: AAA domain
Probab=98.77 E-value=4.4e-08 Score=75.75 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=61.9
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKF 243 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 243 (279)
+++.|.|+.|+|||||+++++.+.. .-...+++. . .+... .... +.+ ....+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~-------~~~~~-~~~~--------~~~-~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-F-------DDPRD-RRLA--------DPD-LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-c-------CCHHH-HHHh--------hhh-hHHHHHHhhccCCc
Confidence 4789999999999999999998865 333445553 1 11111 0000 000 22333334445788
Q ss_pred EEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 244 LIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 244 LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+|+||++....+|...+..+-+.++..+|++|+.+
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccc
Confidence 99999998887777766665544567899998764
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.75 E-value=1.7e-08 Score=85.35 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=40.5
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
|+||+.+++.|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 799999999999999753 3558889999999999999999998744322444443
No 15
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.73 E-value=1.2e-08 Score=79.89 Aligned_cols=58 Identities=43% Similarity=0.705 Sum_probs=49.9
Q ss_pred ceeEEEeccc-cccccCchHHHHHHHhhCCCceeecCcccCCccchHHHHHHHHHhHHHH
Q 047481 16 KYDVFLSFRG-EDTRDNFTSHLYSALSQKGIEAFIDDQLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 16 ~ydVFisf~g-~d~~~~f~~~L~~~L~~~gi~~f~D~~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
+|||||||++ +++.+.|+.+|..+|...|+.+|.|+....+.... ++.++|++|++.|
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i 59 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAI 59 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEE
Confidence 5999999999 56778999999999999999999998544444443 9999999999988
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.72 E-value=2.5e-07 Score=80.49 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCC-c--hhhHHHHHH---
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHN-V--IPDIALSFR--- 236 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~--~~~~~~l~~--- 236 (279)
.+.+.|+|++|+|||||++.+++.+...--..+++. .. ..+...+...++..++.... . ......+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~-~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NT-RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CC-CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988753211122222 11 34556677777766644311 1 112223322
Q ss_pred --HhCCCcEEEEEeCCCChH--HHHHH
Q 047481 237 --RLSSRKFLIVLDDVTCFK--QIKSL 259 (279)
Q Consensus 237 --~l~~k~~LlVlDdv~~~~--~~~~l 259 (279)
...+++++||+||++... .++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l 143 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEEL 143 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHH
Confidence 226788999999998753 34444
No 17
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.8e-07 Score=83.55 Aligned_cols=131 Identities=18% Similarity=0.269 Sum_probs=90.0
Q ss_pred CCCCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCc--eEEEeecccccCCCCCHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEG--SCFLQNVREESQRPGGLGC 212 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 212 (279)
..|..+.+|+.+++++...|.. .+....-+.|+|.+|+|||+.++.+++++...... .+++. ... ..+...
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~-~~t~~~ 88 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLE-LRTPYQ 88 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eee-CCCHHH
Confidence 4556699999999999998864 22233448899999999999999999998766333 45554 222 566778
Q ss_pred HHHHHHHHHhcC----CCchhhHHHHHHHhC--CCcEEEEEeCCCChH-----HHHHHhhcCCCCCCCeEEEE
Q 047481 213 LQQKLLSKLLQD----HNVIPDIALSFRRLS--SRKFLIVLDDVTCFK-----QIKSLIRSHDWYMAESRIII 274 (279)
Q Consensus 213 l~~~ll~~l~~~----~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gsrIii 274 (279)
+...++.++... ....+....+.+.+. ++.+++|||+++... .+-.|....... .++|++
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEE
Confidence 888888877643 233455677777775 588999999997542 233444433322 455555
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=3.2e-07 Score=89.66 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=71.5
Q ss_pred CCCCCccccchhhHHHHHhhcc---CCCCeEEEEEeecccchHHHHHHHHHHHhhcC-----CCc--eEEEeecccccCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIGKTTIARAIFNNISSN-----FEG--SCFLQNVREESQR 206 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-----f~~--~~~~~~~~~~~~~ 206 (279)
..|+.+.|||.++++|...|.. ++....++.|+|++|+|||++++.|..++... .+. .+++. . ..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-C---m~- 826 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-G---MN- 826 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-C---Cc-
Confidence 5678899999999999998864 23334577899999999999999999876432 221 23332 1 11
Q ss_pred CCCHHHHHHHHHHHHhcCCC-----chhhHHHHHHHh-C--CCcEEEEEeCCCCh
Q 047481 207 PGGLGCLQQKLLSKLLQDHN-----VIPDIALSFRRL-S--SRKFLIVLDDVTCF 253 (279)
Q Consensus 207 ~~~~~~l~~~ll~~l~~~~~-----~~~~~~~l~~~l-~--~k~~LlVlDdv~~~ 253 (279)
......+...+..++..... .......+...+ . ....+||||+|+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 23455666677777754411 112233333333 1 23468999999754
No 19
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.59 E-value=1.1e-07 Score=84.06 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=71.5
Q ss_pred CCccccchhhHH---HHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 140 NPLVGVESRVEE---IESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 140 ~~~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
..+||.+..+.+ |..++. .+..+.+.+||++|+||||||+.+...-..+- ..|+. .+....+...+. .
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR-~ 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVR-D 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHH-H
Confidence 566777766554 223333 45678888999999999999999998754432 33454 222122222221 1
Q ss_pred HHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCC--ChHHHHHHhhcCCCCCCCeEEEE--Eecc
Q 047481 217 LLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVT--CFKQIKSLIRSHDWYMAESRIII--TTRN 278 (279)
Q Consensus 217 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~ 278 (279)
++++.. -...+.++|-+|.+|.|. +..|-+.|++... .|+-++| ||.|
T Consensus 209 ife~aq-----------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTEN 260 (554)
T KOG2028|consen 209 IFEQAQ-----------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTEN 260 (554)
T ss_pred HHHHHH-----------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCC
Confidence 222111 112455789999999994 5567777887764 5777777 6654
No 20
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=98.56 E-value=1.2e-08 Score=80.23 Aligned_cols=56 Identities=34% Similarity=0.619 Sum_probs=51.1
Q ss_pred EEEeccccccccCchHHHHHHHhhC--CCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 19 VFLSFRGEDTRDNFTSHLYSALSQK--GIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 19 VFisf~g~d~~~~f~~~L~~~L~~~--gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
|||||++.+.+..|+++|+.+|++. |+++|+++ ++..|..+.+++.++|++|++.|
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I 59 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTI 59 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEE
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeE
Confidence 8999999666889999999999999 99999999 89999999999999999999988
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=9.5e-07 Score=89.45 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
..+..++-|+.-++.+.. ....+++.|+|++|.|||||+..+..+ ++.++|+. ......+...+...
T Consensus 11 ~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~----l~~~d~~~~~f~~~ 77 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS----LDESDNQPERFASY 77 (903)
T ss_pred CCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe----cCcccCCHHHHHHH
Confidence 556678888765555432 235779999999999999999998754 33678886 32214455666666
Q ss_pred HHHHHhcC-----C------------CchhhHHHHHHHh-C-CCcEEEEEeCCCChH------HHHHHhhcCCCCCCCeE
Q 047481 217 LLSKLLQD-----H------------NVIPDIALSFRRL-S-SRKFLIVLDDVTCFK------QIKSLIRSHDWYMAESR 271 (279)
Q Consensus 217 ll~~l~~~-----~------------~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gsr 271 (279)
++..+... . +.......+...+ . +.+++|||||+...+ .+..+.... .++.+
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~ 154 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLT 154 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeE
Confidence 66665321 0 0011122222233 2 689999999995432 234444433 36788
Q ss_pred EEEEecc
Q 047481 272 IIITTRN 278 (279)
Q Consensus 272 IiiTTR~ 278 (279)
+|||||+
T Consensus 155 lv~~sR~ 161 (903)
T PRK04841 155 LVVLSRN 161 (903)
T ss_pred EEEEeCC
Confidence 9899996
No 22
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.53 E-value=1.7e-07 Score=84.58 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=60.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC-CC--chh-------hH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-HN--VIP-------DI 231 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~--~~~-------~~ 231 (279)
-+-.+|+|++|+||||||+.+|+.+.. +|+..+|+..+++. ...+..+++.++..+... .+ ... ..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 457889999999999999999998765 69999999865542 346778888876433222 11 111 11
Q ss_pred HHHHHH-hCCCcEEEEEeCCCC
Q 047481 232 ALSFRR-LSSRKFLIVLDDVTC 252 (279)
Q Consensus 232 ~~l~~~-l~~k~~LlVlDdv~~ 252 (279)
...+.. -.++.+||++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 222222 367999999999954
No 23
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=1.8e-07 Score=80.43 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=59.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC-CC--ch-------hhH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-HN--VI-------PDI 231 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~--~~-------~~~ 231 (279)
.+.++|.|++|+|||||++.+++.+.. +|+..+|+..+.+- ..++.++++.+...+... .+ .. ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 458899999999999999999998754 58999998854432 367888888883332221 11 11 111
Q ss_pred HHHHHH-hCCCcEEEEEeCCCC
Q 047481 232 ALSFRR-LSSRKFLIVLDDVTC 252 (279)
Q Consensus 232 ~~l~~~-l~~k~~LlVlDdv~~ 252 (279)
...... -.+++++|++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 357999999999953
No 24
>PRK06893 DNA replication initiation factor; Validated
Probab=98.50 E-value=6.7e-07 Score=76.21 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=30.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.+.+.|||++|+|||+|++.+++.+..+...+.|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 457899999999999999999999766655666765
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=9.5e-07 Score=79.30 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=42.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.....++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+...
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 33467899999999999988743 34467899999999999999999987543
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.43 E-value=9.6e-07 Score=81.78 Aligned_cols=109 Identities=24% Similarity=0.429 Sum_probs=66.8
Q ss_pred CCCCccccchhhHH---HHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHH
Q 047481 138 NKNPLVGVESRVEE---IESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQ 214 (279)
Q Consensus 138 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 214 (279)
....++|.+..+.. +..++.. .....+.++|++|+||||||+.+++.....|. .+.. . ..+...+.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~---~~~~~~ir 78 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V---TSGVKDLR 78 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c---cccHHHHH
Confidence 34678999887766 7777753 34567889999999999999999998754432 1110 1 11222211
Q ss_pred HHHHHHHhcCCCchhhHHHHHH-HhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEE
Q 047481 215 QKLLSKLLQDHNVIPDIALSFR-RLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIII 274 (279)
Q Consensus 215 ~~ll~~l~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIii 274 (279)
.++. .... ...+++.+|+||+++.. .+.+.|+..+. .|..++|
T Consensus 79 -~ii~-------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI 124 (413)
T PRK13342 79 -EVIE-------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLI 124 (413)
T ss_pred -HHHH-------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEE
Confidence 1111 1111 12457889999999754 45666666654 3555555
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.41 E-value=1.1e-06 Score=73.64 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=39.4
Q ss_pred CCCCCccccchhhHHHHHhhcc---CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
..-++|+|.++-++.+.-++.. ..+...-+.+||+||+||||||.-+++....+|
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 4458899999988887666543 345577899999999999999999999987665
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=1.1e-06 Score=82.89 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=42.7
Q ss_pred CCCCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++++..|+.. .+...+.+.|+|++|+||||+|+.+++.+.
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4446689999999999999864 222367899999999999999999999873
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=3e-06 Score=75.75 Aligned_cols=125 Identities=19% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQ 215 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~ 215 (279)
.....++|.+..++.|..++..+ ..+-+.++|++|+||||+|+.+++.+.. .|... ++. +. .+. ..+...+.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~e-ln-~sd-~~~~~~vr- 82 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEA-VLE-LN-ASD-DRGIDVVR- 82 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccc-eee-ec-ccc-cccHHHHH-
Confidence 34466889888888888887643 3445779999999999999999998743 33322 111 00 111 12222221
Q ss_pred HHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEec
Q 047481 216 KLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 216 ~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
.++........ ....++.-+++||+++.. .....|...+....+.+++|+++.
T Consensus 83 ~~i~~~~~~~~---------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 83 NKIKMFAQKKV---------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred HHHHHHHhccc---------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeC
Confidence 11111110000 000245678999999764 234445444444456788887764
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.39 E-value=4.1e-07 Score=82.88 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCCCccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 138 NKNPLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
....+.|++..+++|.+.+... -...+-+.++|++|+|||+||+.+++.....
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 3446789999999998876421 1234568899999999999999999987654
No 31
>PRK08116 hypothetical protein; Validated
Probab=98.37 E-value=1.6e-06 Score=75.52 Aligned_cols=99 Identities=25% Similarity=0.289 Sum_probs=56.0
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFL 244 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~L 244 (279)
.+.++|.+|+|||.||..+++.+..+...++|+. ...+...+....... .......+.+.+.+-. |
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d-l 181 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS--GKEDENEIIRSLVNAD-L 181 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc--ccccHHHHHHHhcCCC-E
Confidence 5789999999999999999999876644445553 222333333222111 1112223444555444 8
Q ss_pred EEEeCCC--ChHH--HHHHhhcCC-CCCCCeEEEEEec
Q 047481 245 IVLDDVT--CFKQ--IKSLIRSHD-WYMAESRIIITTR 277 (279)
Q Consensus 245 lVlDdv~--~~~~--~~~l~~~~~-~~~~gsrIiiTTR 277 (279)
|||||+. .... ...+...++ ....+..+||||.
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9999993 2211 222322221 1235667999885
No 32
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=1.8e-06 Score=78.36 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=61.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHHHHHHHHhcC-CC--chh-------h
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-HN--VIP-------D 230 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~--~~~-------~ 230 (279)
.-+.++|+|++|.|||||++.+++.+..+ |+..+|+..+++- ..++..+++.++..+... .+ ... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 35588999999999999999999997765 9999998855332 467888888886544332 11 111 1
Q ss_pred HHHHHHH-hCCCcEEEEEeCCCCh
Q 047481 231 IALSFRR-LSSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 ~~~l~~~-l~~k~~LlVlDdv~~~ 253 (279)
....... -.+++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 1112222 3589999999999543
No 33
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=2.9e-06 Score=82.33 Aligned_cols=131 Identities=21% Similarity=0.253 Sum_probs=74.2
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
....+++|.+.-++.|.+++..+. -...+.++|..|+||||+|+.+++.+...-.. . .. .++.......
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~-PCG~C~sCr~ 81 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQ-PCGVCRACRE 81 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CC-CCcccHHHHH
Confidence 445678999999999999987432 24566799999999999999999986432000 0 00 0000000000
Q ss_pred HHH----HHhc---C--CCchhhHHHHHHH----hCCCcEEEEEeCCCChH--HHHHHhhcCCCCCCCeEEEEEecc
Q 047481 217 LLS----KLLQ---D--HNVIPDIALSFRR----LSSRKFLIVLDDVTCFK--QIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 217 ll~----~l~~---~--~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+.. .+.. . ...++....+... ..++.-++|||+++... .+..|+..+....+..++|++|.+
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 000 0000 0 0111111111111 12455688899998664 367777766555568888888865
No 34
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.35 E-value=5.5e-06 Score=63.57 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.2
Q ss_pred EEEeecccchHHHHHHHHHHHhh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
|.|+|++|+|||+||+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999974
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.35 E-value=1.2e-05 Score=78.29 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=88.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
..+.+.+-|..-++.+.. ..+.+.+.|.-++|-|||||+-+... ....-..+.|+. ......++..+.+.
T Consensus 16 ~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~y 85 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLSY 85 (894)
T ss_pred CCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHHH
Confidence 455667777655444433 34588999999999999999999988 444456678887 44446778889999
Q ss_pred HHHHHhcC-----------------CCchhhHHHHHHHhC--CCcEEEEEeCCCC---h---HHHHHHhhcCCCCCCCeE
Q 047481 217 LLSKLLQD-----------------HNVIPDIALSFRRLS--SRKFLIVLDDVTC---F---KQIKSLIRSHDWYMAESR 271 (279)
Q Consensus 217 ll~~l~~~-----------------~~~~~~~~~l~~~l~--~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~gsr 271 (279)
++..+... .+.......+..-+. .+++.+||||..- + .-++-|+...| ++-.
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~ 162 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENLT 162 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCeE
Confidence 98887643 111222333333333 4789999999842 2 23666666665 6889
Q ss_pred EEEEeccC
Q 047481 272 IIITTRNQ 279 (279)
Q Consensus 272 IiiTTR~~ 279 (279)
.|+|||++
T Consensus 163 lvv~SR~r 170 (894)
T COG2909 163 LVVTSRSR 170 (894)
T ss_pred EEEEeccC
Confidence 99999974
No 36
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.34 E-value=5e-06 Score=73.99 Aligned_cols=124 Identities=22% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHH
Q 047481 138 NKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKL 217 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 217 (279)
.-..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+........++. +. .+. ..+...+.. .
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~-~~~~~~~~~-~ 88 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASD-ERGIDVIRN-K 88 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-ccc-ccchHHHHH-H
Confidence 3456899999999999988743 3345799999999999999999998644321112221 10 011 111111111 1
Q ss_pred HHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEec
Q 047481 218 LSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 218 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
+..+..... .....+-++++|+++.. +....|...+....+.+++|+++.
T Consensus 89 i~~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 89 IKEFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred HHHHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 111111000 00134568999999754 234455554444456677887764
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.33 E-value=1.2e-06 Score=74.14 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCccc--cchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 140 NPLVG--VESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 140 ~~~vG--r~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
++|++ .+..++.+..++.. .....+.|+|++|+|||+||+.++++........+++.
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34552 34466777776542 34568889999999999999999998765544455554
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.33 E-value=1.1e-06 Score=77.88 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=41.3
Q ss_pred CCccccchhhHHHHHhhccC---CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..|+|+++.+++|..++... ....+.+.++|++|+|||+||+.+++.+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46899999999998888631 2335568899999999999999999987543
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=4e-06 Score=82.32 Aligned_cols=110 Identities=24% Similarity=0.351 Sum_probs=65.2
Q ss_pred CCCCCccccchhhH---HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHH
Q 047481 137 SNKNPLVGVESRVE---EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCL 213 (279)
Q Consensus 137 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 213 (279)
.....++|.+..+. .+..++.. +....+.++|++|+||||||+.+++.....|. .+.. . ..++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~---~~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V---LAGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h---hhhhHHH
Confidence 33456899988774 45555553 34567789999999999999999988765441 1110 0 0111111
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHh--CCCcEEEEEeCCCC--hHHHHHHhhcCCCCCCCeEEEE
Q 047481 214 QQKLLSKLLQDHNVIPDIALSFRRL--SSRKFLIVLDDVTC--FKQIKSLIRSHDWYMAESRIII 274 (279)
Q Consensus 214 ~~~ll~~l~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIii 274 (279)
. . ......+.+ .+++.+|+|||++. ..+.+.|++... .|+.++|
T Consensus 94 r-~-------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI 141 (725)
T PRK13341 94 R-A-------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLI 141 (725)
T ss_pred H-H-------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEE
Confidence 1 1 111111122 24678999999964 455666766553 3565555
No 40
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.25 E-value=6.4e-06 Score=73.44 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=69.7
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
.....++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.....+ ..+. . . ......+...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~--~~~~~~i~~~ 87 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---S--DCRIDFVRNR 87 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---C--cccHHHHHHH
Confidence 44567899999999999988743 2356777799999999999999998864322 2222 1 1 1111111111
Q ss_pred HHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh---HHHHHHhhcCCCCCCCeEEEEEec
Q 047481 217 LLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF---KQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 217 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
+ ...... ..+...+-+|||||++.. +....+...+.....++++|+||.
T Consensus 88 l-~~~~~~-----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 88 L-TRFAST-----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred H-HHHHHh-----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 1 111000 001234567889999754 222333333333456788888875
No 41
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.24 E-value=8.9e-06 Score=81.71 Aligned_cols=66 Identities=17% Similarity=0.327 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 118 LVREVVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 118 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+++..........+ ..-++++||+.++.++...|.... ...+.++|++|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~----~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQ----GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhc----CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 344444444443333 334679999999999999887543 334568899999999999999998754
No 42
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=9.5e-06 Score=77.81 Aligned_cols=135 Identities=18% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCc-eEEEeecccccCCCCCHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEG-SCFLQNVREESQRPGGLGCLQQ 215 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~ 215 (279)
.....++|.+.-++.|.+++..+. -...+.++|..|+||||||+.+++.+...-.. .--+ ... .++...-..
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~-PCG~C~sC~ 85 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQ-PCGQCRACT 85 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCC-CCcccHHHH
Confidence 444678999999999999887432 24567899999999999999999987531000 0000 000 000000000
Q ss_pred HHHH-------HHhc--CCCchhhHHHHHHH----hCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 216 KLLS-------KLLQ--DHNVIPDIALSFRR----LSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 216 ~ll~-------~l~~--~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.+.. .+.. ....++..+.+... ..++.-++|||+++.. ...+.|+..+....+++++|++|.+
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 0000 0000 01111111111111 2356778999999765 4577788777655567787776653
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.24 E-value=3.2e-06 Score=75.89 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=43.7
Q ss_pred CCCCCccccchhhHHHHHhhcc---CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.....|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 4557799999999999887753 23345678899999999999999999987543
No 44
>PRK12377 putative replication protein; Provisional
Probab=98.23 E-value=7e-06 Score=70.57 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...+.++|.+|+|||.||.++++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999999876655556664
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.3e-05 Score=75.17 Aligned_cols=51 Identities=27% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-...|...+..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444678999888888887776432 235678999999999999999998864
No 46
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=5.8e-06 Score=79.88 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=41.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-+..|..++..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 44567899999999999988743 2245788999999999999999998754
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.22 E-value=7.8e-06 Score=81.00 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 118 LVREVVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 118 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+++....+.....+ ..-++++||+.+++++...|.... ..-+.++|++|+|||+||+.++.++..
T Consensus 164 ~l~~~~~~l~~~~r~----~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN----GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHhhhHHHHHhc----CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 444444444444433 334679999999999999887542 334668999999999999999998743
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.3e-05 Score=76.93 Aligned_cols=52 Identities=33% Similarity=0.323 Sum_probs=42.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+..
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999887432 2467889999999999999999998643
No 49
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.22 E-value=1.1e-05 Score=68.41 Aligned_cols=54 Identities=20% Similarity=0.441 Sum_probs=42.1
Q ss_pred CCCCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.....++|.+.+.+.|.+-... ......-+.+||..|.|||+|++.+.+.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 5556799999999888774432 23346677889999999999999999987654
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.5e-05 Score=72.62 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.+...+..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 44567899999999998888643 2345778999999999999999999864
No 51
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.21 E-value=4.7e-06 Score=74.30 Aligned_cols=110 Identities=22% Similarity=0.333 Sum_probs=77.6
Q ss_pred CCCCccccchhhHHHHHhhccCCCCe-EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 138 NKNPLVGVESRVEEIESLLGAESKDV-YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
..+.+.+|+.++..+..++...+... ..|-|+|-.|.|||.+.+++++.... ..+|+. .-+ .+....+...
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~e-cft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVE-CFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHH-hccHHHHHHH
Confidence 34678999999999999998765544 44589999999999999999988732 356776 222 7788899999
Q ss_pred HHHHHhcC-CC----------chhhHHHHHH--HhC--CCcEEEEEeCCCChHH
Q 047481 217 LLSKLLQD-HN----------VIPDIALSFR--RLS--SRKFLIVLDDVTCFKQ 255 (279)
Q Consensus 217 ll~~l~~~-~~----------~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~ 255 (279)
|+.+.... .+ ....+..+.+ -.. +++++||||+++...+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 99888422 11 1111222333 112 4699999999976554
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.3e-05 Score=79.22 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=75.5
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-C-C-ceEEEee------------cc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-F-E-GSCFLQN------------VR 201 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f-~-~~~~~~~------------~~ 201 (279)
.....++|.+.-+..|.+++..+ .-...+.++|++|+||||+|+.+++.+... . . ..|..++ +-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 34467899999999999888643 224456899999999999999999987542 1 0 0111110 00
Q ss_pred cccCC-CCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 202 EESQR-PGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 202 ~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
++... ..++..+ +++...+ ...-..+++-++|||+++.. ...+.|+..+....+..++|++|.+
T Consensus 92 EidAas~~kVDdI-ReLie~v------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 92 EVDAASRTKVDDT-RELLDNV------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred EeccccccCHHHH-HHHHHHH------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 00000 0111111 1111111 01112467789999999754 5577777777655567888876643
No 53
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.20 E-value=7e-06 Score=62.87 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=27.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..+.|+|++|+||||+++.++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47889999999999999999998766553344443
No 54
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.2e-05 Score=74.67 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=41.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.|...+..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44467899999999999888643 2245678999999999999999998764
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.18 E-value=3.1e-06 Score=84.84 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=40.2
Q ss_pred CCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 139 KNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+++||+.+++++.+.|.... ..-+.++|++|+|||+||+.++.++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999997543 22456999999999999999999864
No 56
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=1.4e-05 Score=72.97 Aligned_cols=145 Identities=21% Similarity=0.316 Sum_probs=90.9
Q ss_pred HHHHHhhcccccCCCCCCCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCc--eEEE
Q 047481 122 VVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEG--SCFL 197 (279)
Q Consensus 122 iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~ 197 (279)
+.......+..+ ..+..++||+.++..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... .+++
T Consensus 135 ~~~~~~~~l~~t---~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i 211 (529)
T KOG2227|consen 135 ISEQRSESLLNT---APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI 211 (529)
T ss_pred HHHHHHHHHHhc---CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE
Confidence 444444444333 4568899999999999999865 35567899999999999999999999987655443 2444
Q ss_pred eecccccCCCCCHHHHHHHHHHHHhcC----CCchhhHHHHHHHhCC--CcEEEEEeCCCChHH--HHHHhhcCCCC-CC
Q 047481 198 QNVREESQRPGGLGCLQQKLLSKLLQD----HNVIPDIALSFRRLSS--RKFLIVLDDVTCFKQ--IKSLIRSHDWY-MA 268 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~ll~~l~~~----~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~ 268 (279)
. ..+ -.....+...++..+... ....+....+..+... ..+|+|||.+|.... -..+...+.|- -+
T Consensus 212 n---c~s--l~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp 286 (529)
T KOG2227|consen 212 N---CTS--LTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP 286 (529)
T ss_pred e---ecc--ccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC
Confidence 3 111 133445666666655322 2223345556566643 379999999986642 12232333222 25
Q ss_pred CeEEEE
Q 047481 269 ESRIII 274 (279)
Q Consensus 269 gsrIii 274 (279)
++|+|+
T Consensus 287 ~sr~iL 292 (529)
T KOG2227|consen 287 NSRIIL 292 (529)
T ss_pred cceeee
Confidence 777765
No 57
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.18 E-value=6.9e-05 Score=64.32 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=34.1
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
+..+.++...-......+.++|.+|+|||+||..+++.+...-..++++.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33444444322223457889999999999999999999876555555553
No 58
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.17 E-value=5.5e-06 Score=76.08 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=39.7
Q ss_pred CCCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 139 KNPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+.|++..++++.+.+.. +-...+-|.++|++|+|||+||+.+++....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 34577999999998886532 1133567889999999999999999998654
No 59
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.16 E-value=5.2e-07 Score=66.66 Aligned_cols=54 Identities=31% Similarity=0.550 Sum_probs=45.2
Q ss_pred EEEeccccccccCchHHHHHHHhhCCCceeecCcccCCccchHHHHHHHHHhHHHH
Q 047481 19 VFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDDQLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 19 VFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
|||||+++| ..|+..|.+.|+++|+++|+|.++..|+.+...+.++|++|...|
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i 54 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVI 54 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEE
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEE
Confidence 899999999 669999999999999999999988899999999999999887766
No 60
>PRK08181 transposase; Validated
Probab=98.15 E-value=7.5e-06 Score=71.26 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=27.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..+.++|++|+|||.||..+.+.+..+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 35889999999999999999998765544455554
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=1.1e-05 Score=68.98 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=37.5
Q ss_pred CCccccch-hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 140 NPLVGVES-RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 140 ~~~vGr~~-~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
++|++..+ .+..+..+... .....+.|+|.+|+|||.|++.+++....+.....|+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 44655443 33333333321 22346999999999999999999998766554556664
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.3e-05 Score=74.21 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=73.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc--CCCceEEEeeccc-ccC-CCCCHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS--NFEGSCFLQNVRE-ESQ-RPGGLGC 212 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~-~~~-~~~~~~~ 212 (279)
.....++|.+.-++.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+..-. +.. ...++..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999998888888887532 2456799999999999999999998742 2222333321000 000 0000000
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHH-----hCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEec
Q 047481 213 LQQKLLSKLLQDHNVIPDIALSFRR-----LSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 213 l~~~ll~~l~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
+-. ......+. ...+.+. ..+++-++|||+++.. ..+..|+..+....+.+.+|++|.
T Consensus 90 l~~------~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 90 IDA------ASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred ecc------cccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 000 00000111 1111111 1246678999999754 457777776655455666666654
No 63
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.12 E-value=1.7e-05 Score=79.88 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=41.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++++||+.++.++...|.... ...+.++|++|+|||+||+.++.++..
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344679999999999999987543 234558999999999999999998754
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=1.3e-05 Score=74.64 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=41.8
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+.-+..|..++..+. -...+.++|++|+||||+|+.+++.+..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 444678999999999988887432 2346889999999999999999998653
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.1e-05 Score=73.81 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+.-++.+..++..+. -...+.++|++|+||||+|+.++..+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344678999999999998887432 2456789999999999999999988643
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.9e-05 Score=73.61 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=41.8
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+++|-+.-++.|.+++..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899999999999998743 2245678999999999999999999864
No 67
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=8.7e-06 Score=70.64 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=25.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
..+.|+|++|+|||+||..++......-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3677999999999999999988754433333444
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=5e-05 Score=69.72 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=40.0
Q ss_pred CCccccchhhHHHHHhhccCCC--------CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLGAESK--------DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++|.+.-++.|.+.+..+.+ -...+.++|++|+|||++|+.++..+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4578888888888888865321 3567889999999999999999987643
No 69
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-05 Score=69.71 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=51.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh----cCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS----SNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRL 238 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l 238 (279)
-++|.++|+||.|||+|++++++++. .+|.....+. + +-..+..+.++.-+ .........+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i-----nshsLFSKWFsESg--KlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I-----NSHSLFSKWFSESG--KLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E-----ehhHHHHHHHhhhh--hHHHHHHHHHHHHH
Confidence 57899999999999999999999864 3466666664 2 22334444433222 22334455666666
Q ss_pred CCC--cEEEEEeCCCC
Q 047481 239 SSR--KFLIVLDDVTC 252 (279)
Q Consensus 239 ~~k--~~LlVlDdv~~ 252 (279)
.++ -+++.+|.|+.
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 654 46667899954
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=2.9e-05 Score=75.10 Aligned_cols=52 Identities=27% Similarity=0.301 Sum_probs=42.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 445778999999999998887432 2456789999999999999999988654
No 71
>PRK10536 hypothetical protein; Provisional
Probab=98.09 E-value=5.6e-05 Score=64.88 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH-h-hcCCCceEEEeecccccC----CCCCHH
Q 047481 138 NKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN-I-SSNFEGSCFLQNVREESQ----RPGGLG 211 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~ 211 (279)
+...+.++......+..+|... ..+.+.|++|+|||+||..++.+ + ...|+..+.....-+..+ .+.++.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 3345677888888888777532 38899999999999999999885 3 344554433321111111 012222
Q ss_pred HHHHHHHH----HHhcCCCchhhHHH-----------HHHHhCCCc---EEEEEeCCCCh--HHHHHHhhcCCCCCCCeE
Q 047481 212 CLQQKLLS----KLLQDHNVIPDIAL-----------SFRRLSSRK---FLIVLDDVTCF--KQIKSLIRSHDWYMAESR 271 (279)
Q Consensus 212 ~l~~~ll~----~l~~~~~~~~~~~~-----------l~~~l~~k~---~LlVlDdv~~~--~~~~~l~~~~~~~~~gsr 271 (279)
+-....+. .+..--+....... --.+++++. -+||+|++.+. .+...++... +.+|+
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk 205 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCE
Confidence 21111111 11110010110111 123566654 49999999654 5566666544 68999
Q ss_pred EEEE
Q 047481 272 IIIT 275 (279)
Q Consensus 272 IiiT 275 (279)
+|+|
T Consensus 206 ~v~~ 209 (262)
T PRK10536 206 VIVN 209 (262)
T ss_pred EEEe
Confidence 9986
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.6e-05 Score=72.24 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=72.8
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC---------------------CceE
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF---------------------EGSC 195 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~ 195 (279)
.....++|.+.-++.|.+.+..+. -...+.++|++|+||||+|+.++..+.... ...+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 445678999998888888776432 245788999999999999999998653221 1111
Q ss_pred EEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEE
Q 047481 196 FLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRII 273 (279)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIi 273 (279)
.+. ... ..++..+. +++.... ..-+.++.-++|+|+++.. ...+.|+..+....+.+++|
T Consensus 89 eid----aas-~~~vddIR-~Iie~~~------------~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 89 EID----AAS-NTSVDDIK-VILENSC------------YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEe----ccc-CCCHHHHH-HHHHHHH------------hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 221 000 11222211 1111100 0001246678999999755 34667776666555778888
Q ss_pred EEec
Q 047481 274 ITTR 277 (279)
Q Consensus 274 iTTR 277 (279)
++|.
T Consensus 151 latt 154 (491)
T PRK14964 151 LATT 154 (491)
T ss_pred EEeC
Confidence 7664
No 73
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.08 E-value=1.3e-05 Score=68.11 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=36.9
Q ss_pred CCCcc-ccchh-hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 139 KNPLV-GVESR-VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 139 ~~~~v-Gr~~~-~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.++|+ |.... +..+..+.. .....+.+.|+|.+|+|||+||+.+++.....-....++.
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 44555 44333 344444443 2233567889999999999999999998644333344553
No 74
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=2.2e-05 Score=68.15 Aligned_cols=27 Identities=33% Similarity=0.350 Sum_probs=23.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+.++|++|+||||+|+.+++.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999998763
No 75
>PRK06526 transposase; Provisional
Probab=98.07 E-value=7e-06 Score=70.95 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=23.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.++|++|+|||+||..+.......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 468899999999999999999886543
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.07 E-value=2.6e-05 Score=78.30 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 118 LVREVVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 118 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.+++....+.....+ ...++++||+.++.++...|.... ...+.++|++|+||||||+.++.++...
T Consensus 169 ~l~~~~~~L~~~~r~----~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 169 ALDQYTTDLTAQARE----GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred hHHHHhhhHHHHhcC----CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 344444444444333 344689999999999999887542 2345689999999999999999987543
No 77
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.06 E-value=2.6e-05 Score=70.58 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.+..++..+ .-...+.++|++|+||||+|+.++..+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44467899999999999988643 2245778999999999999999998864
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.06 E-value=2.9e-05 Score=66.39 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=28.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.+.+.|+|++|+|||+|++.+++.....-..+.|+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457899999999999999999998765544445554
No 79
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.05 E-value=6.7e-06 Score=67.27 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=26.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.-+.++|.+|+|||.||..+.+.+..+-..+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 46889999999999999999998665444455664
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.4e-05 Score=73.01 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=41.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+++|.+.-+..|.+++..+ .-...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899998888899888743 2246778999999999999999988864
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=3.9e-05 Score=68.44 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC------CCceEEEeecccccCCCCCHHHH
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN------FEGSCFLQNVREESQRPGGLGCL 213 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~l 213 (279)
..++|.+.-++.+...+..+ .-.....++|+.|+||||||+.++..+... .+...|.. . ......+..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~---~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I---NKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c---cCCCCCHHHH
Confidence 45788888888888888643 234577899999999999999999976322 22222221 0 0101222222
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCC--ChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 214 QQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVT--CFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 214 ~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
. .+...+... -..+++-++|+|+++ +...+..|+..+....+++.+|++|.+
T Consensus 79 r-~~~~~~~~~------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~ 132 (313)
T PRK05564 79 R-NIIEEVNKK------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN 132 (313)
T ss_pred H-HHHHHHhcC------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 2 111211110 112455566667664 455678888877766778999998864
No 82
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=4e-05 Score=70.67 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=41.7
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+.-++.|..++..+. -...+.++|++|+||||+|+.+++.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445678999998888888887432 2446889999999999999999998743
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=6.6e-05 Score=70.94 Aligned_cols=52 Identities=31% Similarity=0.311 Sum_probs=41.2
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+.-+..|...+..+ .-...+.++|++|+||||+|+.+++.+..
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567899999888888876543 22467889999999999999999998643
No 84
>PRK05642 DNA replication initiation factor; Validated
Probab=98.00 E-value=1.9e-05 Score=67.52 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=28.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...+.|||.+|+|||.|++.+++.+..+-..++|+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 357899999999999999999998765444556664
No 85
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.99 E-value=6.7e-05 Score=70.77 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=40.6
Q ss_pred CCCCCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..-..+.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+.+++.+...
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3345577899988888776532 11235568899999999999999999997654
No 86
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.99 E-value=2.1e-05 Score=68.33 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=60.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCch--h---
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVI--P--- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~--~--- 229 (279)
-+-++|.|.+|.|||||++.+++++..+|+..|++..+++- ......+.+.+...-... .+.. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45889999999999999999999998888888887765543 445666666665432111 1111 1
Q ss_pred ---hHHHHHHHh--C-CCcEEEEEeCCCCh
Q 047481 230 ---DIALSFRRL--S-SRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ---~~~~l~~~l--~-~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ + ++.+||++||+...
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 112345555 3 88999999999543
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.98 E-value=0.00018 Score=59.14 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+.+.+..+ .-...+.++|++|+||||+|+.+...+..
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344444422 22467889999999999999999998643
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.98 E-value=3.5e-05 Score=65.19 Aligned_cols=99 Identities=21% Similarity=0.333 Sum_probs=58.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCC-c-eEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFE-G-SCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLS 239 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~ 239 (279)
....+.|||..|+|||.|.+++++.+....+ . ++|+. ...+...+...+.. .....+...++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~-----~~~~~~~~~~~ 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD-----GEIEEFKDRLR 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT-----TSHHHHHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc-----ccchhhhhhhh
Confidence 3556889999999999999999999765433 2 33443 23344444433332 12344555666
Q ss_pred CCcEEEEEeCCCCh---HHH-HHHhhcCC-CCCCCeEEEEEec
Q 047481 240 SRKFLIVLDDVTCF---KQI-KSLIRSHD-WYMAESRIIITTR 277 (279)
Q Consensus 240 ~k~~LlVlDdv~~~---~~~-~~l~~~~~-~~~~gsrIiiTTR 277 (279)
+ -=+|+|||++.. ..+ +.+...++ ....|.+||+|+.
T Consensus 97 ~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 97 S-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp T-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred c-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 4 446778999643 212 22222221 1134778999985
No 89
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=4.5e-05 Score=69.52 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=42.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..-..++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+..
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567899999999999988743 23458889999999999999999888643
No 90
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=6.7e-05 Score=74.75 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344678999999999999887432 234678999999999999999999875
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=9e-05 Score=70.95 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=41.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899999999999888643 2246788999999999999999999864
No 92
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.92 E-value=2.3e-05 Score=66.78 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=29.4
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.++|.|.+|.|||||+..+...+...|.+.++++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5678899999999999999999999997666664
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.92 E-value=4.9e-05 Score=70.24 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=54.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCC--ceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFE--GSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSS 240 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 240 (279)
...+.|+|++|+|||.|++.+++.+..+.. .++|+. ...+...+...+... . ...+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN-K----MEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC-C----HHHHHHHHHh
Confidence 457889999999999999999999876543 233442 122333444433321 1 2233344433
Q ss_pred CcEEEEEeCCCChH---H-HHHHhhcCCC-CCCCeEEEEEec
Q 047481 241 RKFLIVLDDVTCFK---Q-IKSLIRSHDW-YMAESRIIITTR 277 (279)
Q Consensus 241 k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR 277 (279)
.-+|+|||++... . .+.++..+.. ...|..+|+|+.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 3478899996431 1 1223222211 123566888775
No 94
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.91 E-value=5.5e-05 Score=70.88 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=55.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCc--eEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEG--SCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLS 239 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~ 239 (279)
....+.|+|++|+|||+|++.+++.+..++.. ++|+. ...+...+...+.. . ....+.+.++
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~-~----~~~~~~~~~~ 210 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRN-N----TMEEFKEKYR 210 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHc-C----cHHHHHHHHh
Confidence 34678999999999999999999998776533 33343 12233334333321 1 1223344444
Q ss_pred CCcEEEEEeCCCCh---H-HHHHHhhcCC-CCCCCeEEEEEec
Q 047481 240 SRKFLIVLDDVTCF---K-QIKSLIRSHD-WYMAESRIIITTR 277 (279)
Q Consensus 240 ~k~~LlVlDdv~~~---~-~~~~l~~~~~-~~~~gsrIiiTTR 277 (279)
+.-+|+|||++.. + ..+.++..+. ....|..||+||.
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 3458889999542 1 1223332211 1123556888774
No 95
>PRK06921 hypothetical protein; Provisional
Probab=97.91 E-value=6.8e-05 Score=65.28 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=29.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999997765 44456665
No 96
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.91 E-value=3.3e-05 Score=71.04 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=40.2
Q ss_pred CCCCCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..-..+.|.+...++|.+.+.. +-...+-+.++|++|+|||+||+.+++.....
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3334578888888888776531 11346678899999999999999999986543
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=7.6e-05 Score=69.65 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=56.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCC-c-eEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFE-G-SCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSS 240 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 240 (279)
...+.|||.+|+|||.|++.+++.+...++ . ++|+. ...+...+...+.. .. ...+.+.++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~-~~----~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKE-GK----LNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhc-cc----HHHHHHHHHh
Confidence 456999999999999999999999766543 2 34443 12344444443322 11 1223344444
Q ss_pred CcEEEEEeCCCCh---HH-HHHHhhcCC-CCCCCeEEEEEec
Q 047481 241 RKFLIVLDDVTCF---KQ-IKSLIRSHD-WYMAESRIIITTR 277 (279)
Q Consensus 241 k~~LlVlDdv~~~---~~-~~~l~~~~~-~~~~gsrIiiTTR 277 (279)
+.-+|+|||++.. .. -+.++..+. ....|..||+||.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 5668999999643 11 122222211 1123557888874
No 98
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.90 E-value=4.5e-05 Score=63.48 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=61.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEE-EeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCF-LQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
..|.|+|+.|.||||++..+...+.......++ +.+-.+... . ... .+..+-.-..+.......++..|+..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~-~~~----~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-E-SKR----SLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-c-Ccc----ceeeecccCCCccCHHHHHHHHhcCCc
Confidence 378999999999999999998887655444433 322111100 0 000 011000001123345567788888888
Q ss_pred EEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEec
Q 047481 243 FLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 243 ~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
=++++|++.+.+.+...+.... .|..++.|+.
T Consensus 76 d~ii~gEird~e~~~~~l~~a~---~G~~v~~t~H 107 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAAE---TGHLVMSTLH 107 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEec
Confidence 8999999988777665554332 3555666653
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=9.1e-05 Score=71.61 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=41.8
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+.-+..|...+..+ .-...+.++|++|+||||+|+.+++.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44577899999999998888643 22456889999999999999999998644
No 100
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.89 E-value=0.00012 Score=57.83 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=26.9
Q ss_pred EEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
+.|+|.+|+||||++..++......-..++|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999998766545556664
No 101
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=2.7e-05 Score=71.86 Aligned_cols=55 Identities=25% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc--CCCceEEEe
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS--NFEGSCFLQ 198 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~ 198 (279)
..+++.+..++.+...|... ..|.++|++|+|||++|+.+++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 34677778888888887643 36778999999999999999998754 344444554
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00018 Score=69.08 Aligned_cols=51 Identities=29% Similarity=0.292 Sum_probs=41.5
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.++..+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467899999999999988743 2244678999999999999999998865
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.89 E-value=2.8e-05 Score=76.79 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=39.4
Q ss_pred CCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 139 KNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
-++++||+.++.++.+.|.... ...+.++|++|+|||+||+.++..+.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3569999999999999887632 22446799999999999999998853
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=7.7e-05 Score=69.76 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=56.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCC--ceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFE--GSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSS 240 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 240 (279)
...+.|+|..|+|||.|++.+++.+..... .++++. ...+...+...+... ......+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~---~~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKT---HKEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHh---hhHHHHHHHHhc-
Confidence 456889999999999999999998754322 233443 233444554443321 112333444444
Q ss_pred CcEEEEEeCCCCh----HHHHHHhhcCCC-CCCCeEEEEEec
Q 047481 241 RKFLIVLDDVTCF----KQIKSLIRSHDW-YMAESRIIITTR 277 (279)
Q Consensus 241 k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gsrIiiTTR 277 (279)
..-+|||||+... ...+.|...++. ...|..||+|+.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 3457888999532 122333322221 134557888864
No 105
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.86 E-value=0.00012 Score=64.16 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=69.5
Q ss_pred hhhHHHHHhhccC-CCCeEEEEEeecccchHHHHHHHHHHHhhcCCC------ceEEEeecccccCCCCCHHHHHHHHHH
Q 047481 147 SRVEEIESLLGAE-SKDVYALGIWGIGGIGKTTIARAIFNNISSNFE------GSCFLQNVREESQRPGGLGCLQQKLLS 219 (279)
Q Consensus 147 ~~~~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~l~~~ll~ 219 (279)
.-++.+.++|... ....+.+.|+|.+|+|||++++++.......++ .++.+. ... ..+...+...||.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~-~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPP-EPDERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCC-CCChHHHHHHHHH
Confidence 3456666666543 344678999999999999999999987644433 233333 333 6788899999999
Q ss_pred HHhcC----CCchhhHHHHHHHhC-CCcEEEEEeCCCC
Q 047481 220 KLLQD----HNVIPDIALSFRRLS-SRKFLIVLDDVTC 252 (279)
Q Consensus 220 ~l~~~----~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 252 (279)
.++.. .........+.+.++ -+--+||+|++.+
T Consensus 119 ~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 119 ALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99876 233333444555665 3567889999965
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=6.7e-05 Score=72.34 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=42.7
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 44567899999999999988743 22457889999999999999999998654
No 107
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.86 E-value=8e-05 Score=66.73 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..+.++|.+|+|||.||..+++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57999999999999999999999766544556664
No 108
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=7.3e-05 Score=72.27 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=41.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444679999999999988886432 245678999999999999999998864
No 109
>PRK09087 hypothetical protein; Validated
Probab=97.85 E-value=0.00014 Score=61.74 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+.+.|||++|+|||+|++.++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999888763
No 110
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.85 E-value=0.00033 Score=59.07 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=71.0
Q ss_pred CCCCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQ 214 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 214 (279)
..-..++|.+...+.+.+-... ......-|.+||..|.|||.|.+++.+.+...... .+. +.. .++..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVE----V~k--~dl~~-- 126 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVE----VDK--EDLAT-- 126 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe--EEE----EcH--HHHhh--
Confidence 3445689999988887764432 23445678899999999999999999998776655 232 211 11111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHh--CCCcEEEEEeCCC---ChHHHHHHhhcCC---CCCCCeEEEEEecc
Q 047481 215 QKLLSKLLQDHNVIPDIALSFRRL--SSRKFLIVLDDVT---CFKQIKSLIRSHD---WYMAESRIIITTRN 278 (279)
Q Consensus 215 ~~ll~~l~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~---~~~~~~~l~~~~~---~~~~gsrIiiTTR~ 278 (279)
...+.+.| +.+|+.|..||+. +....+.|...+. ...|.-.++..|-|
T Consensus 127 ----------------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 127 ----------------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 12223333 4689999999992 3334455544432 22344445555544
No 111
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.85 E-value=0.00014 Score=70.74 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=39.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+.++|.+..+..+...+.. .....+.|+|++|+||||||+.+++...
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 4446789999999988777643 3345799999999999999999987753
No 112
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00018 Score=65.04 Aligned_cols=52 Identities=33% Similarity=0.263 Sum_probs=43.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|-+.-.+.+...+..+ .-...+.|+|+.|+||||||+.+++.+..
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 56678999999999999888744 23457889999999999999999998754
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00017 Score=69.35 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34467889888888888888643 2246788999999999999999999864
No 114
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.83 E-value=3.4e-05 Score=71.58 Aligned_cols=52 Identities=29% Similarity=0.454 Sum_probs=39.9
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
..+.|.+..+++|.+.+.. +-....-+.++|++|+|||+||+.+++.....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4567899999988887642 112345678999999999999999999876544
No 115
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.0003 Score=62.62 Aligned_cols=119 Identities=19% Similarity=0.176 Sum_probs=70.1
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCC---------------------ceEEEeec
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFE---------------------GSCFLQNV 200 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~~~~~ 200 (279)
++|.+....++..+..........+.++|++|+||||+|..+++.+..... ....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-- 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec--
Confidence 566677777777777643333446999999999999999999998754321 111221
Q ss_pred ccccCCCCC---HHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEE
Q 047481 201 REESQRPGG---LGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIIT 275 (279)
Q Consensus 201 ~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiT 275 (279)
.+. ... .....+++....... ...++.-+++||+++.. +....+...+....+.+++|++
T Consensus 81 --~s~-~~~~~i~~~~vr~~~~~~~~~------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 81 --PSD-LRKIDIIVEQVRELAEFLSES------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred --ccc-cCCCcchHHHHHHHHHHhccC------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 000 001 111111111111100 00356788999999865 3356666666656678888888
Q ss_pred ec
Q 047481 276 TR 277 (279)
Q Consensus 276 TR 277 (279)
|.
T Consensus 146 ~n 147 (325)
T COG0470 146 TN 147 (325)
T ss_pred cC
Confidence 75
No 116
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.82 E-value=0.00014 Score=63.94 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
-+.++|++|+|||++|+.++..+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999998887643
No 117
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00011 Score=68.55 Aligned_cols=98 Identities=12% Similarity=0.216 Sum_probs=55.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
...+.|+|++|+|||+|++.+++.+......++|+. ...+...+...+... ....++..++ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHcc-cC
Confidence 457889999999999999999999765444445553 122333443333211 1223444444 34
Q ss_pred EEEEEeCCCChH----HHHHHhhcCCC-CCCCeEEEEEec
Q 047481 243 FLIVLDDVTCFK----QIKSLIRSHDW-YMAESRIIITTR 277 (279)
Q Consensus 243 ~LlVlDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR 277 (279)
-+|+|||+.... ..+.+...++. ...|..||+||.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 578889995321 12222222110 123567888874
No 118
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=5.3e-05 Score=71.38 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQR 206 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 206 (279)
.....+=|++..+.++.+++.. +-...+=|.+||+||+|||.||++++.++.-.|- . ++.
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-----~----isA- 256 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-----S----ISA- 256 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE-----e----ecc-
Confidence 3445677899999988887643 2234677889999999999999999998765432 1 111
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCC
Q 047481 207 PGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVT 251 (279)
Q Consensus 207 ~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 251 (279)
.++.+.+.+ +......+...+....-++++++|+++
T Consensus 257 --------peivSGvSG-ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 --------PEIVSGVSG-ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred --------hhhhcccCc-ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 111222221 222233334444556789999999995
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.81 E-value=0.00014 Score=73.32 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 140 NPLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
..++|.+.-++.+...+... .....++.++|++|+|||+||+.+++.+...-...+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i 632 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI 632 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 46789999888888876531 12245788999999999999999998765433333333
No 120
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.81 E-value=0.00027 Score=59.74 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=57.2
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC------CceEEEeecccccCCCCCHHHHHHHHHH----
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF------EGSCFLQNVREESQRPGGLGCLQQKLLS---- 219 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~ll~---- 219 (279)
..|..+|..+-..-.++.|+|.+|+|||+||.+++....... ..++|+..- . .+....+.+..-.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e----~-~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE----G-AFRPERLVQLAVRFGLD 80 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC----C-CCCHHHHHHHHHHhccc
Confidence 345555654445567999999999999999999988765544 556777621 1 2333333322111
Q ss_pred --HHhcC------CCchhhHHHHHHHhC----CCcEEEEEeCCC
Q 047481 220 --KLLQD------HNVIPDIALSFRRLS----SRKFLIVLDDVT 251 (279)
Q Consensus 220 --~l~~~------~~~~~~~~~l~~~l~----~k~~LlVlDdv~ 251 (279)
.+... .+.++....+..... .+.-|+|+|.+.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 81 PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 01111 334444444554442 456699999984
No 121
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9e-05 Score=72.51 Aligned_cols=125 Identities=16% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCccccchhhHHHHHhhcc-------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHH
Q 047481 140 NPLVGVESRVEEIESLLGA-------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGC 212 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 212 (279)
...+|.+..+..+.+.+.. .+.++.+....|+.|+|||.||+.++..+...=+.-+-+ ++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-----------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-----------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-----------chHH
Confidence 4678999888888877643 233467888899999999999999999875332222222 2222
Q ss_pred HHH-HHHHHHhcCC----CchhhHHHHHHHhCCCcE-EEEEeCCCC--hHHHHHHhhcCCCC----C-------CCeEEE
Q 047481 213 LQQ-KLLSKLLQDH----NVIPDIALSFRRLSSRKF-LIVLDDVTC--FKQIKSLIRSHDWY----M-------AESRII 273 (279)
Q Consensus 213 l~~-~ll~~l~~~~----~~~~~~~~l~~~l~~k~~-LlVlDdv~~--~~~~~~l~~~~~~~----~-------~gsrIi 273 (279)
.++ .-.+++.+.+ .-++ -..+.+..+.++| +|.||+|+. ++-++.|+..++.. + .++-||
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 222 2233343331 1122 3456677788887 888999974 45566666655421 1 456677
Q ss_pred EEe
Q 047481 274 ITT 276 (279)
Q Consensus 274 iTT 276 (279)
.||
T Consensus 639 mTS 641 (786)
T COG0542 639 MTS 641 (786)
T ss_pred Eec
Confidence 776
No 122
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.81 E-value=0.0012 Score=61.50 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=25.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887654
No 123
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.79 E-value=3.4e-05 Score=74.55 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=42.2
Q ss_pred CCCCCccccchhhHHHHHhhccCC---CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAES---KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~---~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|-+..++++..+|.... ...+++.|+|++|+||||+++.++..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455678999999999999886532 3356799999999999999999998753
No 124
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.78 E-value=0.00011 Score=66.32 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=61.9
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC-CceEEEeecccccCCCCCHHHHHHHHHHHHhcCC---
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF-EGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDH--- 225 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--- 225 (279)
..+++++..-. .-+-++|+|.+|+|||||++.+++.+..+. +..|++.- +.++......+.+.++..+....
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l---IgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL---IDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE---ecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34666665422 234668999999999999999999887654 44333332 33336677888888877655431
Q ss_pred Cchhh------HHHHHHHh--CCCcEEEEEeCCCC
Q 047481 226 NVIPD------IALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 226 ~~~~~------~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
..... ...+.+++ .++.++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11111 11122222 58999999999953
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.77 E-value=9e-05 Score=64.48 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=78.2
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc--CCCceEEEeecccccCCCCCHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS--NFEGSCFLQNVREESQRPGGLGCLQ 214 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~ 214 (279)
.....++|.+..+..|.+.+.. ...+....+|++|.|||+-|+.++.++.. -|++.+.=.+... ..+..-..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd----erGisvvr 106 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD----ERGISVVR 106 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc----cccccchh
Confidence 4456789999999998888874 45778899999999999999999998654 2665544322222 11221111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHhC--CCc-EEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEe
Q 047481 215 QKLLSKLLQDHNVIPDIALSFRRLS--SRK-FLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITT 276 (279)
Q Consensus 215 ~~ll~~l~~~~~~~~~~~~l~~~l~--~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT 276 (279)
..+ .+............. .++ -.+|||+++.. +.|..|......+...++.|+.+
T Consensus 107 ~Ki-------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 107 EKI-------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred hhh-------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 100 111111111110110 123 57889999865 45888888877777788877654
No 126
>PRK04296 thymidine kinase; Provisional
Probab=97.76 E-value=8.5e-05 Score=61.39 Aligned_cols=105 Identities=15% Similarity=0.032 Sum_probs=58.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC------CCchhhHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD------HNVIPDIALSFRR 237 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~------~~~~~~~~~l~~~ 237 (279)
.++.|+|++|.||||+|..++.+...+...++++. - .... ..+.. .++.++... .........+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~-~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDD-RYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccc-cccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 36788999999999999999998765544444342 0 0010 11111 112222111 122233333333
Q ss_pred hCCCcEEEEEeCCCC--hHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 238 LSSRKFLIVLDDVTC--FKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 238 l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
..++.-+||+|.+.- .+++..+...+. ..|..||+|.++
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 334556899999954 344555554432 358889998875
No 127
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.76 E-value=0.0003 Score=67.34 Aligned_cols=137 Identities=15% Similarity=0.251 Sum_probs=90.9
Q ss_pred CCCCCccccchhhHHHHHhhcc--CCCC-eEEEEEeecccchHHHHHHHHHHHhh-----cCCCceEEEeecccccCCCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA--ESKD-VYALGIWGIGGIGKTTIARAIFNNIS-----SNFEGSCFLQNVREESQRPG 208 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~--~~~~-~~~i~I~G~gGiGKTtLA~~v~~~~~-----~~f~~~~~~~~~~~~~~~~~ 208 (279)
..+..+.+|+.+..+|...+.. ..++ ...+-|.|.+|.|||..+..|.+.+. ..-+...|+. +. ... -.
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~-l~ 469 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLR-LA 469 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-cee-ec
Confidence 4567789999999999998865 2223 45899999999999999999998653 2233333332 11 111 34
Q ss_pred CHHHHHHHHHHHHhcC-CCchhhHHHHHHHhC-----CCcEEEEEeCCCChHH--HHHHhhcCCCC-CCCeEEEEEe
Q 047481 209 GLGCLQQKLLSKLLQD-HNVIPDIALSFRRLS-----SRKFLIVLDDVTCFKQ--IKSLIRSHDWY-MAESRIIITT 276 (279)
Q Consensus 209 ~~~~l~~~ll~~l~~~-~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gsrIiiTT 276 (279)
+...+...|...+.++ .........+..+.. .+..++++|+++.+-. -+.+...++|- .++|+++|.+
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 5677888888887766 344556677777764 4678999999865432 22233334442 3688888753
No 128
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=0.00012 Score=61.97 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.|.++|..+-..-.++.|+|.+|+|||+||.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455566544455679999999999999999999988766666677876
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.75 E-value=0.00037 Score=61.41 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+.++|++|+||||+|+.++..+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999988754
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.75 E-value=0.00014 Score=73.03 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=39.7
Q ss_pred CCccccchhhHHHHHhhcc-------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..++|.+.-++.+.+.+.. ......++.++|++|+|||.||+.++..+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4678988888888877632 22335678999999999999999999887543
No 131
>PHA00729 NTP-binding motif containing protein
Probab=97.74 E-value=0.00012 Score=61.77 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999864
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.74 E-value=0.00024 Score=71.65 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=43.0
Q ss_pred CCccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 140 NPLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
..++|.+..++.+...+... .....++.++|++|+|||+||+.++..+...-...+.+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 46899999999988877541 12256788999999999999999999875443333333
No 133
>CHL00176 ftsH cell division protein; Validated
Probab=97.74 E-value=0.00014 Score=70.70 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCccccchhhHHHHHhh---ccC-------CCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLL---GAE-------SKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+.|.+...+++.+++ ... ....+-+.++|++|+|||+||+.++....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677766555555443 211 12245688999999999999999998763
No 134
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.74 E-value=2.7e-05 Score=59.11 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|+|.|++|+||||+|+.++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 135
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.74 E-value=8e-05 Score=60.58 Aligned_cols=36 Identities=33% Similarity=0.641 Sum_probs=31.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999987777777774
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0002 Score=69.45 Aligned_cols=52 Identities=25% Similarity=0.262 Sum_probs=41.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+..+..|..++..+. -...+.++|+.|+||||+|+.++..+..
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 344678999999999998887532 2357789999999999999999998654
No 137
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.73 E-value=0.00027 Score=58.92 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=58.2
Q ss_pred chhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh--hcCCCceEEEeecccccCC-CCCHHHHHHHH-----
Q 047481 146 ESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI--SSNFEGSCFLQNVREESQR-PGGLGCLQQKL----- 217 (279)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~--~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~l----- 217 (279)
..+.....+.|. ...++.+.|++|.|||.||.+.+-+. ...|+..++....-+..+. .+-+-.+.+++
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 344445555554 23488899999999999999988653 3557777776544322110 11111111111
Q ss_pred --HHHHhcCCCchhhHHHH---------HHHhCCC---cEEEEEeCCC--ChHHHHHHhhcCCCCCCCeEEEEE
Q 047481 218 --LSKLLQDHNVIPDIALS---------FRRLSSR---KFLIVLDDVT--CFKQIKSLIRSHDWYMAESRIIIT 275 (279)
Q Consensus 218 --l~~l~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~--~~~~~~~l~~~~~~~~~gsrIiiT 275 (279)
...+..--+.......+ -.+++++ ..++|+|++. ...+++.++... +.||+||++
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~ 152 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIIT 152 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEE
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEe
Confidence 11111100111111111 1234543 5799999995 456777776554 689999996
No 138
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.73 E-value=0.00011 Score=61.42 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=35.2
Q ss_pred hhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 155 LLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 155 ~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
+|..+-..-.++.|+|++|+|||+||.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44444445679999999999999999999988766666788886
No 139
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.72 E-value=0.0002 Score=63.67 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=61.6
Q ss_pred cchhhHHHHHhhccCC--CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHh
Q 047481 145 VESRVEEIESLLGAES--KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLL 222 (279)
Q Consensus 145 r~~~~~~l~~~L~~~~--~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 222 (279)
+...+.....++..-. ....-+.++|..|+|||.||.++++.+...-..+.|+. ...+...+-....
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~ 204 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHh
Confidence 3333444444554211 13457889999999999999999999865544455554 1223333332221
Q ss_pred cCCCchhhHHHHHHHhCCCcEEEEEeCCCC--hHHHH--HHhhcC-C-CCCCCeEEEEEec
Q 047481 223 QDHNVIPDIALSFRRLSSRKFLIVLDDVTC--FKQIK--SLIRSH-D-WYMAESRIIITTR 277 (279)
Q Consensus 223 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gsrIiiTTR 277 (279)
. .. .....+.+ .+-=||||||+.. ...|. .++..+ . ....+-.+|+||-
T Consensus 205 ~-~~----~~~~l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 D-GS----VKEKIDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c-Cc----HHHHHHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 11 11122223 3567889999942 22332 233322 1 1123556788873
No 140
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00013 Score=63.19 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=28.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3447889999999999999999999884333444554
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.72 E-value=0.00029 Score=69.98 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..++|.+..++.+...+... .....++.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46788888888888776531 12355788999999999999999999873
No 142
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.71 E-value=7e-05 Score=58.38 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.++|++|+|||+||+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999988
No 143
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.70 E-value=0.00039 Score=59.28 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..+..+|..+-..-.++.|+|.+|+|||+||.++......+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 4455566555455779999999999999999999776444445566665
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00054 Score=64.68 Aligned_cols=51 Identities=25% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-+..+..++..+ .-.....++|++|+||||+|+.++..+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467899999999999988753 2345677899999999999999998864
No 145
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.69 E-value=0.00021 Score=67.83 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=35.1
Q ss_pred CCCCccccchhhHHHHHhhc---c-------CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 138 NKNPLVGVESRVEEIESLLG---A-------ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+.|.+...+++.+++. . +....+-+.++|++|+|||+||+.++....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 33457787776655554432 1 122345688999999999999999998754
No 146
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00063 Score=64.65 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|-+.-++.|...+..+ .-.....++|++|+||||+|+.+++.+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 44467899999889998888643 2345678999999999999999998863
No 147
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.68 E-value=0.00028 Score=59.37 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=37.2
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..|..+|..+-..-.++.|+|.+|+||||||.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455666544455779999999999999999999988765545566775
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.67 E-value=6.1e-05 Score=63.48 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+.+.|||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999877654
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.67 E-value=0.00012 Score=72.77 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 139 KNPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+.|.+..++++.+++.. +-.....+.++|++|+|||+||+.+++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34578999988888876632 11234578899999999999999999987543
No 150
>PRK14974 cell division protein FtsY; Provisional
Probab=97.67 E-value=0.0027 Score=57.11 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998876654
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.66 E-value=0.00034 Score=70.39 Aligned_cols=128 Identities=13% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCccccchhhHHHHHhhcc-------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHH
Q 047481 140 NPLVGVESRVEEIESLLGA-------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGC 212 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 212 (279)
..++|.+.-++.+...+.. ...+...+.++|++|+|||+||+.++..+...-...+.+. ..+... ......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~-~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYME-KHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccc-cccHHH
Confidence 5678999888888777642 1223456778999999999999999998754322223332 222222 222221
Q ss_pred HHHHHHHHHhcC---CCchhhHHHHHHHhCCCc-EEEEEeCCCCh--HHHHHHhhcCCCC-----------CCCeEEEEE
Q 047481 213 LQQKLLSKLLQD---HNVIPDIALSFRRLSSRK-FLIVLDDVTCF--KQIKSLIRSHDWY-----------MAESRIIIT 275 (279)
Q Consensus 213 l~~~ll~~l~~~---~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gsrIiiT 275 (279)
+ ++.. ...++ ...+.+.++.++ -+++||+++.. +.+..|+..+... -..+-||+|
T Consensus 587 l-------~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 L-------IGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred h-------cCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1 1111 01111 123445555554 58899999753 4455555544321 145667777
Q ss_pred ec
Q 047481 276 TR 277 (279)
Q Consensus 276 TR 277 (279)
|.
T Consensus 659 sn 660 (821)
T CHL00095 659 SN 660 (821)
T ss_pred CC
Confidence 64
No 152
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=3.3e-05 Score=62.48 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=26.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc---CCCceEEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS---NFEGSCFL 197 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~~ 197 (279)
-|.|+|++|+||||||+.+++.+.. +|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5789999999999999999998643 36666553
No 153
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.66 E-value=0.0001 Score=66.34 Aligned_cols=30 Identities=33% Similarity=0.587 Sum_probs=26.4
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.....++|||++|+|||.+|+.++.+....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 447799999999999999999999997654
No 154
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0041 Score=56.82 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..++|+++|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876543
No 155
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=0.00017 Score=58.63 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998774
No 156
>PRK09354 recA recombinase A; Provisional
Probab=97.61 E-value=0.00064 Score=61.16 Aligned_cols=93 Identities=19% Similarity=0.147 Sum_probs=59.4
Q ss_pred hHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC---
Q 047481 149 VEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--- 224 (279)
Q Consensus 149 ~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--- 224 (279)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+..-. ..+. ..+..++-.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~-----s~~~-----~~a~~lGvdld~ 114 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH-----ALDP-----VYAKKLGVDIDN 114 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc-----chHH-----HHHHHcCCCHHH
Confidence 345566676 45556779999999999999999999888766666778886211 1221 122222211
Q ss_pred ------CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 225 ------HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 225 ------~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
.+.++....+...++ +..-|||+|-|-
T Consensus 115 lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 115 LLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 334444555555554 467899999983
No 157
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.61 E-value=4.8e-05 Score=68.37 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=41.4
Q ss_pred CccccchhhHHHHHhhccC----CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 141 PLVGVESRVEEIESLLGAE----SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~----~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.++|+++.++++.+++... ....++++++|++|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988642 234678999999999999999999988643
No 158
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00084 Score=64.80 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=41.5
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44567899999889999888743 2245678999999999999999998864
No 159
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=6.8e-05 Score=59.36 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=28.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC-CCceEEE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFL 197 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 197 (279)
.-|+|.||||+|||||++.+.+.+... |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 468999999999999999999998766 7765444
No 160
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.59 E-value=0.0012 Score=53.06 Aligned_cols=119 Identities=17% Similarity=0.234 Sum_probs=65.7
Q ss_pred ccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC--------------------CCceEEEeecccc
Q 047481 144 GVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN--------------------FEGSCFLQNVREE 203 (279)
Q Consensus 144 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~~~~~~~~ 203 (279)
|.+..++.|...+..+ .-...+.++|+.|+||+++|..+++.+... .+...++.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 3445566666666532 224578899999999999999999985322 223333321100
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 204 SQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 204 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.. .-....+. .+...+... -..++.=++||||++.. +....|+..+.....++++|++|.+
T Consensus 79 ~~-~i~i~~ir-~i~~~~~~~------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KK-SIKIDQIR-EIIEFLSLS------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SS-SBSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cc-hhhHHHHH-HHHHHHHHH------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 00 01122211 221111111 11245778899999754 4466676666555679999999875
No 161
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00053 Score=58.29 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC------CCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN------FEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 198 (279)
.|..+|..+-..-.++.|+|.+|+|||+||.+++-..... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444555444456799999999999999999998654322 25677776
No 162
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.00044 Score=63.75 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=56.1
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFL 244 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~L 244 (279)
++.|.|+-++|||||++.+....... .+++..... ...-..+ .+.+. .+...-..++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~----~~~~~~l-~d~~~-------------~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDL----RLDRIEL-LDLLR-------------AYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecch----hcchhhH-HHHHH-------------HHHHhhccCCce
Confidence 89999999999999997776665444 444431111 1111111 01111 111111127899
Q ss_pred EEEeCCCChHHHHHHhhcCCCCCCCeEEEEEec
Q 047481 245 IVLDDVTCFKQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 245 lVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
|+||.|.....|...+..+-+.++. +|+||+-
T Consensus 98 ifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgs 129 (398)
T COG1373 98 IFLDEIQNVPDWERALKYLYDRGNL-DVLITGS 129 (398)
T ss_pred EEEecccCchhHHHHHHHHHccccc-eEEEECC
Confidence 9999999999998887776655555 8888764
No 163
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0015 Score=59.55 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+...+.+.+.+..+ .-...+.++|+.|+||+|||..++..+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 55677999999989898888743 2245788999999999999999999864
No 164
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00059 Score=63.90 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.+..++..+. -...+.++|++|+||||+|+.+++.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999886432 245688999999999999999999864
No 165
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.00039 Score=66.77 Aligned_cols=96 Identities=16% Similarity=0.246 Sum_probs=54.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCC--ceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFE--GSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSS 240 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 240 (279)
...+.|||..|+|||.|++.+++.+...+. .++|+. ...+..++...+... ....+++.+++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~ 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYRE 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhc
Confidence 345899999999999999999998765432 234443 223333443333211 12233444443
Q ss_pred CcEEEEEeCCCCh---HH----HHHHhhcCCCCCCCeEEEEEec
Q 047481 241 RKFLIVLDDVTCF---KQ----IKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 241 k~~LlVlDdv~~~---~~----~~~l~~~~~~~~~gsrIiiTTR 277 (279)
.=||+|||+... +. +-.++..+. ..|..|||||.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd 418 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSD 418 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecC
Confidence 357888999533 11 222332222 34667888876
No 166
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0014 Score=63.01 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=42.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.+.+++..+. -...+.++|+.|+||||+|+.++..+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445789999999999999887532 356778899999999999999998864
No 167
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.57 E-value=0.0025 Score=55.70 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
.+..++.++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998775543333333
No 168
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.56 E-value=0.00058 Score=59.36 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.+.|++|+|||+||+.++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999865
No 169
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.56 E-value=0.0006 Score=62.18 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=38.0
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++..+...-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666554445679999999999999999999988766545566665
No 170
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0013 Score=63.22 Aligned_cols=51 Identities=29% Similarity=0.324 Sum_probs=42.1
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|-+.-++.|..++..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44567899999999999988743 2355788999999999999999999864
No 171
>PRK07667 uridine kinase; Provisional
Probab=97.55 E-value=0.0002 Score=59.30 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=32.4
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
++.+.+.+........+|+|.|.+|.||||||+.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45566666554455689999999999999999999998754
No 172
>PRK06696 uridine kinase; Validated
Probab=97.54 E-value=0.00016 Score=61.29 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=34.5
Q ss_pred cchhhHHHHHhhcc-CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 145 VESRVEEIESLLGA-ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 145 r~~~~~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
|...+++|.+.+.. ......+|+|.|.+|+||||||+.+...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44555666665532 34457899999999999999999999987543
No 173
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.0014 Score=56.04 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.0
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4455666655566789999999999999999998776445556677775
No 174
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.51 E-value=0.00073 Score=60.19 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=57.8
Q ss_pred hHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC---
Q 047481 149 VEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--- 224 (279)
Q Consensus 149 ~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--- 224 (279)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+..- ..+.. ..+..++-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E-------~~~~~---~~a~~lGvd~~~ 109 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE-------HALDP---VYARKLGVDIDN 109 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc-------chhHH---HHHHHcCCCHHH
Confidence 344555665 4445677999999999999999999988876665666777521 11111 122222211
Q ss_pred ------CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 225 ------HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 225 ------~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
...++....+...++ +..-++|+|.|-
T Consensus 110 l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 110 LLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred eEEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 333444555555554 567899999983
No 175
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00057 Score=60.84 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 141 PLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..=|.+.++++|.+..... -+...=|.+||+||.|||-||++|+++....
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 3447788888888765432 1446678899999999999999999986543
No 176
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00075 Score=60.21 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=57.9
Q ss_pred hHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC---
Q 047481 149 VEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--- 224 (279)
Q Consensus 149 ~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--- 224 (279)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+..-. ..+. ..+..++-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~-----~~~~-----~~a~~lGvd~~~ 109 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH-----ALDP-----VYAKKLGVDLDN 109 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc-----cHHH-----HHHHHcCCCHHH
Confidence 344556665 44455778999999999999999999888766666677876211 1111 122222211
Q ss_pred ------CCchhhHHHHHHHhC-CCcEEEEEeCC
Q 047481 225 ------HNVIPDIALSFRRLS-SRKFLIVLDDV 250 (279)
Q Consensus 225 ------~~~~~~~~~l~~~l~-~k~~LlVlDdv 250 (279)
.+.++....+...++ +..-|+|+|.|
T Consensus 110 l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 110 LLISQPDTGEQALEIADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred heecCCCCHHHHHHHHHHHHhccCCCEEEEcch
Confidence 334445555555554 46789999998
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.49 E-value=0.00018 Score=60.46 Aligned_cols=51 Identities=27% Similarity=0.287 Sum_probs=41.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..-.+.||-++.++.+.-.-. +.+.+-+.|.||||+||||-+..+++.+..
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 444678999998888876655 345778889999999999999999998643
No 178
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00067 Score=66.40 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=41.1
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+.-++.|...+..+ .-...+.++|++|+||||+|+.++..+.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34467899999999999988743 2355678999999999999999998864
No 179
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.47 E-value=0.00051 Score=69.10 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=42.4
Q ss_pred CccccchhhHHHHHhhccC-CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 141 PLVGVESRVEEIESLLGAE-SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+++||+.+++.|...+..- .....++.+.|.+|||||+|+++|...+...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 3799999999999988653 3446799999999999999999999987654
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00058 Score=67.67 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHhhcc-------CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLLGA-------ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..++|.+..++.|...+.. .......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999988888887753 122356789999999999999999998874
No 181
>PRK04328 hypothetical protein; Provisional
Probab=97.44 E-value=0.0018 Score=55.84 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455566554445679999999999999999998776544455666765
No 182
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.025 Score=52.66 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=26.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh--cCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS--SNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 198 (279)
..++.++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35899999999999999999988765 3333344443
No 183
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.43 E-value=6.2e-05 Score=67.95 Aligned_cols=111 Identities=22% Similarity=0.251 Sum_probs=72.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHH-HhcC-CCchhhHHHHHHHhC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSK-LLQD-HNVIPDIALSFRRLS 239 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~-l~~~-~~~~~~~~~l~~~l~ 239 (279)
..+.+.++|.|||||||++-.+.. +...|...+++.+...+.. ..+.-.++.. +... .+-+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD-----~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD-----PALVFPTLAGALGLHVQPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc-----hhHhHHHHHhhcccccccchHHHHHHHHHHh
Confidence 356889999999999999999999 8888998888876766544 2222222222 2222 222445667788889
Q ss_pred CCcEEEEEeCCCChH-HHHHHhhcCCCCCCCeEEEEEecc
Q 047481 240 SRKFLIVLDDVTCFK-QIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 240 ~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+++.++|+||..+.- +-..+...+....+.-.|+.|+|+
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre 126 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSRE 126 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHh
Confidence 999999999997653 223333333222334556666653
No 184
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0013 Score=59.66 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=58.9
Q ss_pred hhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC-C
Q 047481 147 SRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-H 225 (279)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~ 225 (279)
..+.++...|..+--.-.+|.|-|-||||||||..+++.++..+. .+.|+.. +.+...+.- -+.++.-. .
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-------EES~~Qikl-RA~RL~~~~~ 147 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-------EESLQQIKL-RADRLGLPTN 147 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-------CcCHHHHHH-HHHHhCCCcc
Confidence 345667777765444466899999999999999999999988776 6677751 223332221 12333311 1
Q ss_pred Cc----hhhHHHHHHHh-CCCcEEEEEeCC
Q 047481 226 NV----IPDIALSFRRL-SSRKFLIVLDDV 250 (279)
Q Consensus 226 ~~----~~~~~~l~~~l-~~k~~LlVlDdv 250 (279)
+. +...+.+.+.+ ..++-|+|+|-+
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 11 11122333333 478999999988
No 185
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.43 E-value=0.0074 Score=55.89 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|.++|++|+||||+|.+++..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998876544
No 186
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.43 E-value=0.0014 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=26.6
Q ss_pred EEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
+.|.|++|+|||+||.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999887655545666775
No 187
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00045 Score=66.34 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=48.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
.+.|.|.|+.|+|||+||+++++.+...-.+.+-+....... ...+..+|..+ ...+.+.+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~--~~~~e~iQk~l-------------~~vfse~~~~~P 495 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLD--GSSLEKIQKFL-------------NNVFSEALWYAP 495 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhcc--chhHHHHHHHH-------------HHHHHHHHhhCC
Confidence 557899999999999999999999875433222222111111 22344444332 233455777899
Q ss_pred EEEEEeCCCC
Q 047481 243 FLIVLDDVTC 252 (279)
Q Consensus 243 ~LlVlDdv~~ 252 (279)
-+|||||++.
T Consensus 496 SiIvLDdld~ 505 (952)
T KOG0735|consen 496 SIIVLDDLDC 505 (952)
T ss_pred cEEEEcchhh
Confidence 9999999953
No 188
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.41 E-value=0.0024 Score=53.04 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=51.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHh-----
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRL----- 238 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l----- 238 (279)
+++.|.|.+|.||||+++.+...+...-..++++. .. ......+....... .......+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----pT-----~~Aa~~L~~~~~~~--a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----PT-----NKAAKELREKTGIE--AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----SS-----HHHHHHHHHHHTS---EEEHHHHTTEECCEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----Cc-----HHHHHHHHHhhCcc--hhhHHHHHhcCCccccc
Confidence 47888999999999999999888766533333443 11 11222233332211 000000000000
Q ss_pred ----CCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEE
Q 047481 239 ----SSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIIT 275 (279)
Q Consensus 239 ----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiT 275 (279)
..++-+||+|++... .++..++.... ..|+++|+.
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilv 127 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILV 127 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEE
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEE
Confidence 123459999999754 46777776665 257888874
No 189
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.41 E-value=0.00063 Score=61.49 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=62.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE-eecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL-QNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
...|.|.|+.|.||||+.+.+...+.......++. .+..+... . +.. .+..+.....+.......++..|+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~-~~~----~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-R-NKR----SLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-c-Ccc----ceEEccccCCCCcCHHHHHHHhhccC
Confidence 35899999999999999999998876555544443 22111100 0 000 00000000012233566788889999
Q ss_pred cEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEe
Q 047481 242 KFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITT 276 (279)
Q Consensus 242 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTT 276 (279)
+=.|++|++.+.+.+...+... ..|..++.|.
T Consensus 196 pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~ 227 (343)
T TIGR01420 196 PDVILIGEMRDLETVELALTAA---ETGHLVFGTL 227 (343)
T ss_pred CCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEE
Confidence 9999999999887766544432 2355555554
No 190
>PRK10867 signal recognition particle protein; Provisional
Probab=97.40 E-value=0.013 Score=54.53 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|.++|++|+||||+|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46799999999999999999998876554
No 191
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0024 Score=62.11 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=41.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34467899999999999988743 2245688999999999999999999864
No 192
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.0013 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987754
No 193
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.38 E-value=0.0014 Score=55.81 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=30.6
Q ss_pred HhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 154 SLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 154 ~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..|..+-+...++.|.|.+|.||||||.+++.....+-..++|+.
T Consensus 15 ~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 15 KRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred hhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 334333334559999999999999999777766533334556665
No 194
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0013 Score=60.23 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=59.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
....+.|||..|.|||-|++++.+......+..-++. . ........+...+.. ......++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~-----~se~f~~~~v~a~~~-----~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L-----TSEDFTNDFVKALRD-----NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c-----cHHHHHHHHHHHHHh-----hhHHHHHHhh--c
Confidence 4779999999999999999999999887766443333 1 122333333333322 2334455555 4
Q ss_pred cEEEEEeCCCCh-------HHHHHHhhcCCCCCCCeEEEEEec
Q 047481 242 KFLIVLDDVTCF-------KQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 242 ~~LlVlDdv~~~-------~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
-=++++||++-. +.+-.++..+. ..|-.||+|++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsd 216 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSD 216 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcC
Confidence 457889999431 11222333332 33448888875
No 195
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.37 E-value=0.00015 Score=55.19 Aligned_cols=22 Identities=50% Similarity=0.792 Sum_probs=20.4
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|+|.|++|+||||||+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 196
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.36 E-value=0.0078 Score=53.78 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=25.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887654
No 197
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.00018 Score=62.05 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=43.5
Q ss_pred CCCCCccccchhhHHHHHhhcc---CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
..-..|+|.++-.+++.-.+.. ....+.-+.++|+||.||||||.-+++....++
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 4447899999888887766643 234477899999999999999999999976543
No 198
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.34 E-value=0.0047 Score=52.30 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..|.++|..+-..-..+.|.|.+|.||||||.+++.....+-+.++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555444455679999999999999999998776544455667775
No 199
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.33 E-value=0.0026 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
++.+.|++|.||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 200
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.33 E-value=0.00083 Score=52.87 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=52.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
-.+++|.|..|.|||||++.+...... ..+.+++.....+.- -+. -..-+...-.+.+.+..++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~-~~~--------------lS~G~~~rv~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGY-FEQ--------------LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEE-Ecc--------------CCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999776432 344555532111110 000 0111222333455566677
Q ss_pred EEEEEeCCC---ChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 243 FLIVLDDVT---CFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 243 ~LlVlDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
-++++|+-. |....+.+...+... +..||++|.+
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~ 126 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 788999883 333323332222211 2357777754
No 201
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.33 E-value=0.00072 Score=55.23 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=59.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHH------HHHHHHhcC-------CCc--
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQ------KLLSKLLQD-------HNV-- 227 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~------~ll~~l~~~-------~~~-- 227 (279)
-.+++|.|..|.|||||++.++.... ...+.+++... ... ......... +++..+... ...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~--~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA--SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC--cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 45899999999999999999987643 34555665421 111 111111111 123322211 111
Q ss_pred -hhhHHHHHHHhCCCcEEEEEeCCC---ChHHHHHHhhcCCCC-CC-CeEEEEEecc
Q 047481 228 -IPDIALSFRRLSSRKFLIVLDDVT---CFKQIKSLIRSHDWY-MA-ESRIIITTRN 278 (279)
Q Consensus 228 -~~~~~~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gsrIiiTTR~ 278 (279)
+...-.+.+.+...+-+++||+-. |....+.+...+... .. |..||++|.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 222344566667788899999883 233333332222211 12 6678888764
No 202
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.32 E-value=0.0016 Score=53.11 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=25.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
-.+++|.|..|.|||||++.++..... ..+.+++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITL 61 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEE
Confidence 448999999999999999999876432 2344444
No 203
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.32 E-value=0.002 Score=57.55 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=34.9
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC------CceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF------EGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 198 (279)
..+..+|..+-....++-|+|++|+|||+||.+++....... ..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 345555654445567899999999999999999987753321 2567776
No 204
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.31 E-value=0.018 Score=53.51 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...++.++|.+|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999988864
No 205
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.30 E-value=0.0016 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998875
No 206
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.29 E-value=0.0019 Score=60.38 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=38.4
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
-+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 455666777655445679999999999999999999988764444566665
No 207
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.28 E-value=0.0024 Score=59.82 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=39.0
Q ss_pred hhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 147 SRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.-+.++..+|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456677777655555679999999999999999999887765534566765
No 208
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.27 E-value=0.0026 Score=55.43 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=62.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHH--HHH--HhcC----CCchhhHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKL--LSK--LLQD----HNVIPDIAL 233 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l--l~~--l~~~----~~~~~~~~~ 233 (279)
+...++|+|++|.|||||.+.++..+... .+.+++.. ..+.. ......+...+ +.+ ++.. .+... ...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~-~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGI-VDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeec-chhHHHHHHHhcccccccccccccccccchH-HHH
Confidence 45789999999999999999999876543 33344421 01110 01111222111 000 0000 11111 222
Q ss_pred HHHHh-CCCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 234 SFRRL-SSRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 234 l~~~l-~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+...+ ...+-++++|.+-..+.+..+..... .|..||+||.+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~ 228 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHG 228 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEech
Confidence 33333 36899999999987777777766653 47788988864
No 209
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0012 Score=53.44 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=26.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
-.+++|.|+.|.|||||.+.++..... ..+.+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 458999999999999999999886432 3455554
No 210
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0013 Score=56.71 Aligned_cols=87 Identities=22% Similarity=0.172 Sum_probs=52.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccC-CCCCHHHHHHHHHHHHhcC-----------CCchhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQ-RPGGLGCLQQKLLSKLLQD-----------HNVIPD 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~ll~~l~~~-----------~~~~~~ 230 (279)
..++||+|.+|.|||||++.+..-.... .+.+++..-. ... ..........+++..++.. ..-...
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~-i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD-ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc-hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4589999999999999999998765443 3344443110 000 0111223334445544422 112223
Q ss_pred HHHHHHHhCCCcEEEEEeCCC
Q 047481 231 IALSFRRLSSRKFLIVLDDVT 251 (279)
Q Consensus 231 ~~~l~~~l~~k~~LlVlDdv~ 251 (279)
.-.+.+.|.-++-|+|.|..-
T Consensus 117 Ri~IARALal~P~liV~DEpv 137 (268)
T COG4608 117 RIGIARALALNPKLIVADEPV 137 (268)
T ss_pred hHHHHHHHhhCCcEEEecCch
Confidence 355778888999999999873
No 211
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0028 Score=62.32 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=40.1
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..-++.+||+.+++++++.|....++-++ ++|.+|+|||+++..++.++-.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhc
Confidence 34467999999999999999764332222 4599999999999999999643
No 212
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.26 E-value=0.0007 Score=58.90 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=62.2
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHh-cCCCc
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLL-QDHNV 227 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~ 227 (279)
++.+..++.. .-..|.|.|..|.||||+++.+...+...-...+.+++..+..- .+.. ++. .....
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~~--------q~~v~~~~~ 135 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGIN--------QVQVNEKAG 135 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCce--------EEEeCCcCC
Confidence 3444444432 23489999999999999999998877543233455543333211 1110 000 00111
Q ss_pred hhhHHHHHHHhCCCcEEEEEeCCCChHHHHHHhhcC
Q 047481 228 IPDIALSFRRLSSRKFLIVLDDVTCFKQIKSLIRSH 263 (279)
Q Consensus 228 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~ 263 (279)
......++..|+..+=.|+++++.+.+....++...
T Consensus 136 ~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa 171 (264)
T cd01129 136 LTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA 171 (264)
T ss_pred cCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH
Confidence 234677888899999999999999988766555443
No 213
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.26 E-value=0.00026 Score=58.57 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999998754
No 214
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.26 E-value=0.0019 Score=57.17 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=81.9
Q ss_pred CCCccccchhhHHHHHhhccC--CCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCC-CCCHHHHHH
Q 047481 139 KNPLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQR-PGGLGCLQQ 215 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~ 215 (279)
..+++|-.++..++..++... -+....+.|+|+.|.|||+|......+ ...|.-...+..+.+..+. .-.+..+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 346899999999999888641 123446778899999999998877777 4456655565544443331 112223333
Q ss_pred HHHHHHhcC----CCchhhHHHHHHHhCC------CcEEEEEeCCCCh----HH--HHHHhhc-CCCCCCCeEEEEEec
Q 047481 216 KLLSKLLQD----HNVIPDIALSFRRLSS------RKFLIVLDDVTCF----KQ--IKSLIRS-HDWYMAESRIIITTR 277 (279)
Q Consensus 216 ~ll~~l~~~----~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~----~~--~~~l~~~-~~~~~~gsrIiiTTR 277 (279)
++..++... .+..+....+...|+. -++++|+|.+|-. .| +-.++.. .....|=|-|-+|||
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 333332221 3444555566666642 4699999988642 22 2333322 223356788888987
No 215
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.26 E-value=0.00033 Score=54.66 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=31.5
Q ss_pred cccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 143 VGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
||.-..++++.+.+..-......|.|+|.+|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4566666666666654223344678999999999999999988643
No 216
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0058 Score=54.86 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+.++|+.|+||||+|+.++..+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 567889999999999999999998643
No 217
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0052 Score=56.33 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 218
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.018 Score=52.41 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...++.++|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999887644333344443
No 219
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00082 Score=56.24 Aligned_cols=30 Identities=33% Similarity=0.539 Sum_probs=26.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.+|||-|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999998755
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.23 E-value=0.0015 Score=54.21 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=25.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
.+|.++|+.|+||||.+-+++.++..+-..+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 5899999999999999999988866553334444
No 221
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.23 E-value=0.0013 Score=61.53 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=32.7
Q ss_pred hhhHHHHHhhc-----cCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 147 SRVEEIESLLG-----AESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 147 ~~~~~l~~~L~-----~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+.++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 35667777776 344557799999999999999999998874
No 222
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.23 E-value=0.0016 Score=52.49 Aligned_cols=112 Identities=19% Similarity=0.063 Sum_probs=56.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEee---cccccCCCCCH--HHHHHHHHHHHhcC-CCchhhHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQN---VREESQRPGGL--GCLQQKLLSKLLQD-HNVIPDIALSFR 236 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~~~~~~~~--~~l~~~ll~~l~~~-~~~~~~~~~l~~ 236 (279)
-..++|.|..|.|||||++.++..+.. ..+.+++.. +.-+.+ ...+ ..+.+.+....... ..-+...-.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q-~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQ-RPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECC-CCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 448999999999999999999876432 233333321 111122 1111 12333322100111 222233344566
Q ss_pred HhCCCcEEEEEeCCC---ChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 237 RLSSRKFLIVLDDVT---CFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 237 ~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.+..++-+++||+-. |....+.+...+... +..||++|.+
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~ 147 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence 666777888899873 222222222222212 3557777764
No 223
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.22 E-value=0.00059 Score=68.23 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHhhcc----CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 141 PLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
..+|.+.-.+.|.+++.. +......+.++|++|+|||+||+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 467888888888776532 222345789999999999999999999876544
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.22 E-value=0.00098 Score=66.32 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=36.2
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.|.+...++|.+.+.. +-....-+.++|++|+|||+||+.+++.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3456777776666665431 11234568899999999999999999986543
No 225
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.21 E-value=0.00059 Score=62.50 Aligned_cols=60 Identities=32% Similarity=0.465 Sum_probs=50.0
Q ss_pred CCCceeEEEeccccccccCchHHHHHHHhhCCCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 13 RNHKYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 13 ~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
.....|||||||.. +....++.|.--|.-+|+++|+|= ++.-|+ +...+++.|+..+-+|
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFi 669 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFI 669 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeE
Confidence 45679999999875 356778888888899999999996 666664 7789999999999888
No 226
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.20 E-value=0.00038 Score=66.09 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=41.6
Q ss_pred CCccccchhhHHHHHhhc----cCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLG----AESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++|++..+++|.+.|. .-...-+++.++|++|+||||||+.++.-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 368999999999999882 22345679999999999999999999987654
No 227
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00087 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFE 192 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~ 192 (279)
+.|.+.|.||+||||+|++++..++.+-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 46778999999999999999998766533
No 228
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.18 E-value=0.00044 Score=60.25 Aligned_cols=118 Identities=18% Similarity=0.123 Sum_probs=68.2
Q ss_pred hhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCC
Q 047481 147 SRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHN 226 (279)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 226 (279)
...+++.++|...-...+.|.|.|..|.||||++..+...+...-...+.+.+..+..-...+... +....+
T Consensus 111 ~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~--------~~~~~~ 182 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQ--------IQTRRD 182 (270)
T ss_dssp HCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEE--------EEEETT
T ss_pred hhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEE--------EEeecC
Confidence 344556666654323356899999999999999999998876652334445433222110000000 000023
Q ss_pred chhhHHHHHHHhCCCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEE-EEEe
Q 047481 227 VIPDIALSFRRLSSRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRI-IITT 276 (279)
Q Consensus 227 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrI-iiTT 276 (279)
.......++..|+..+=.++++++.+.+....+.... .|..+ +-|.
T Consensus 183 ~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~~----tGh~~~~tT~ 229 (270)
T PF00437_consen 183 EISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAAN----TGHLGSLTTL 229 (270)
T ss_dssp TBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHHH----TT-EEEEEEE
T ss_pred cccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhhc----cCCceeeeee
Confidence 4455677888999999999999998887777744333 47777 4443
No 229
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0026 Score=57.22 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=33.8
Q ss_pred ccc-cchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 142 LVG-VESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 142 ~vG-r~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.++..+.
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 455 555666666666532 2355778999999999999999998864
No 230
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.002 Score=60.24 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=66.5
Q ss_pred CCccccch---hhHHHHHhhccCC-------CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCC
Q 047481 140 NPLVGVES---RVEEIESLLGAES-------KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGG 209 (279)
Q Consensus 140 ~~~vGr~~---~~~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 209 (279)
.+.-|.|+ ++++|.++|.... .=..=|.++|+||.|||-||++++-...-. +|...-.+..+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFdE---- 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFDE---- 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchhh----
Confidence 34556664 6677777886532 225567889999999999999998764332 23321111100
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHh----CCCcEEEEEeCCCCh-------------HHHHHHhhcCCCCCCCeEE
Q 047481 210 LGCLQQKLLSKLLQDHNVIPDIALSFRRL----SSRKFLIVLDDVTCF-------------KQIKSLIRSHDWYMAESRI 272 (279)
Q Consensus 210 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gsrI 272 (279)
++ .-.+...++..+ +.-+++|.+|.++.. ..+..|+..++-|.++.-|
T Consensus 376 -------m~--------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 376 -------MF--------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred -------hh--------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 00 011222333333 356899999999531 1266777777767776666
Q ss_pred EE
Q 047481 273 II 274 (279)
Q Consensus 273 ii 274 (279)
||
T Consensus 441 Iv 442 (752)
T KOG0734|consen 441 IV 442 (752)
T ss_pred EE
Confidence 66
No 231
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0066 Score=55.29 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCC--CceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNF--EGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~ 198 (279)
..+++++|++|+||||++.+++......+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56999999999999999999998864443 3344443
No 232
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.16 E-value=0.0015 Score=53.34 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=42.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEee--cccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQN--VREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSS 240 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 240 (279)
-.+++|.|+.|.|||||++.++..... ..+.+.+.. +.-..+ ...+ ..-+...-.+.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q-~~~L--------------SgGq~qrv~laral~~ 88 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ-YIDL--------------SGGELQRVAIAAALLR 88 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcc-cCCC--------------CHHHHHHHHHHHHHhc
Confidence 348999999999999999998875432 334444431 111111 1110 1111223344556666
Q ss_pred CcEEEEEeCC
Q 047481 241 RKFLIVLDDV 250 (279)
Q Consensus 241 k~~LlVlDdv 250 (279)
++-+++||+-
T Consensus 89 ~p~lllLDEP 98 (177)
T cd03222 89 NATFYLFDEP 98 (177)
T ss_pred CCCEEEEECC
Confidence 7788888987
No 233
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.15 E-value=0.0029 Score=59.86 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=62.9
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC---
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--- 224 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--- 224 (279)
-+..+.++|..+-..-.++.|.|++|+|||||+.+++.....+-+.++|+. . +.....+.... ..++-.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s----~---eEs~~~i~~~~-~~lg~~~~~ 319 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA----Y---EESRAQLLRNA-YSWGIDFEE 319 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE----e---eCCHHHHHHHH-HHcCCChHH
Confidence 456677777765566779999999999999999999998766666667765 2 33444444443 222111
Q ss_pred ----------------CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 225 ----------------HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 225 ----------------~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
...+.....+.+.+. .+.-++|+|.+.
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 112444555555554 356789999985
No 234
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.13 E-value=0.00032 Score=61.16 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+.|.|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 478899999999999999999987653
No 235
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.13 E-value=0.0015 Score=61.63 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCccccchhhHHHHHhh---c-----cCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLL---G-----AESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L---~-----~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+-|.+...+.+.... . .+-...+-|.++|++|+|||.+|+.+++.+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45667665554444321 1 01233567889999999999999999998643
No 236
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.13 E-value=0.00085 Score=53.92 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=57.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhc---CCCchhhHHHHHHHhC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ---DHNVIPDIALSFRRLS 239 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~---~~~~~~~~~~l~~~l~ 239 (279)
-..++|.|..|.|||||.+.++.... ...+.+++... .... ........ ..+.- -..-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~--~~~~~~~~---~~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSF--ASPRDARR---AGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc--CCHHHHHh---cCeEEEEecCHHHHHHHHHHHHHh
Confidence 44899999999999999999987643 34555665421 1111 11111100 01110 0112223344556666
Q ss_pred CCcEEEEEeCCC---ChHHHHHHhhcCCCC-CCCeEEEEEecc
Q 047481 240 SRKFLIVLDDVT---CFKQIKSLIRSHDWY-MAESRIIITTRN 278 (279)
Q Consensus 240 ~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gsrIiiTTR~ 278 (279)
..+-+++||+-. |....+.+...+... ..|..||++|.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 778888899883 222222222222111 236678888765
No 237
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.13 E-value=0.0015 Score=58.57 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=37.7
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..++|....+.++.+.+..-...-..|.|+|.+|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999888888877653333457889999999999999999854
No 238
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00035 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 239
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.11 E-value=0.00053 Score=55.68 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh-cCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS-SNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 198 (279)
...+.+.|+.|+|||.||+.++..+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 45788999999999999999999987 4555544444
No 240
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00058 Score=65.73 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCccccchhhHHHHHhhcc----CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCC
Q 047481 140 NPLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFE 192 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~ 192 (279)
.+-+|.+.-.++|.++|.- ..-.-++++++|+||+|||.|++.++..+...|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 4568999999999998853 2334579999999999999999999999877663
No 241
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.10 E-value=0.00087 Score=53.40 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=29.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.+|-|.|.+|.||||||+++..++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57889999999999999999999987766666663
No 242
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.09 E-value=0.0005 Score=57.52 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=24.3
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999886
No 243
>PRK06762 hypothetical protein; Provisional
Probab=97.09 E-value=0.00046 Score=55.46 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=22.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+|.|+|++|+||||+|+.+...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999999886
No 244
>PRK08233 hypothetical protein; Provisional
Probab=97.09 E-value=0.00043 Score=56.30 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 245
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0046 Score=54.00 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=59.4
Q ss_pred HHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHH-HhcC-----C
Q 047481 152 IESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSK-LLQD-----H 225 (279)
Q Consensus 152 l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~-l~~~-----~ 225 (279)
+..+|..+-+.-+++=|+|+.|.||||||.+++-.....-..++|++.-+ .+++..+. +++.. +..- .
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~-----~l~p~r~~-~l~~~~~d~l~v~~~~ 122 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEH-----ALDPERAK-QLGVDLLDNLLVSQPD 122 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC-----CCCHHHHH-HHHHhhhcceeEecCC
Confidence 44455544456789999999999999999999988877777889997322 34444433 33333 2111 3
Q ss_pred CchhhHHHH---HHHhCCCcEEEEEeCC
Q 047481 226 NVIPDIALS---FRRLSSRKFLIVLDDV 250 (279)
Q Consensus 226 ~~~~~~~~l---~~~l~~k~~LlVlDdv 250 (279)
+.++....+ ......+--|+|+|.+
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 333333333 3333335789999998
No 246
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.08 E-value=0.0027 Score=62.78 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..++|....+..+.+.+..-...-..|.|+|.+|+|||+||+.++....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 4689999888888776654333344788999999999999999988643
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.07 E-value=0.0029 Score=50.61 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=57.9
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHH-----hc-----CCCchh----
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKL-----LQ-----DHNVIP---- 229 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-----~~-----~~~~~~---- 229 (279)
..|-|++..|.||||+|..++-+...+=..+.++.=+.. .. ..+-..+...+ ..+ .. ..+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg-~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG-GW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC-CC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467888888999999999999886554333333321111 00 11222222222 000 00 011111
Q ss_pred ---hHHHHHHHhC-CCcEEEEEeCCCC--------hHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 230 ---DIALSFRRLS-SRKFLIVLDDVTC--------FKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 230 ---~~~~l~~~l~-~k~~LlVlDdv~~--------~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.....++.+. +.-=|||||++.. .+.+-.++..- .++..+|+|.|+
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~ 137 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCC
Confidence 2233444443 4667999999943 23344444333 357889999996
No 248
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.0018 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEEeecccchHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
-.+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998853
No 249
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.0049 Score=51.94 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=57.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC---CC-c-eEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN---FE-G-SCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRR 237 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~---f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~ 237 (279)
..-..|.|+||+|||||.+.+++-++.. |. . ++.++.-.+......+........--++. ..-......+.-.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVl--d~cpk~~gmmmaI 214 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL--DPCPKAEGMMMAI 214 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhc--ccchHHHHHHHHH
Confidence 3446788999999999999999886544 33 2 33333111111100111111111111111 1111222222222
Q ss_pred hCCCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEe
Q 047481 238 LSSRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITT 276 (279)
Q Consensus 238 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTT 276 (279)
=...+=++|+|.+-..++..++...+. .|-++|.|.
T Consensus 215 rsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~Ta 250 (308)
T COG3854 215 RSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTA 250 (308)
T ss_pred HhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEee
Confidence 335678999999988777777766653 577777765
No 250
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.05 E-value=0.0082 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHH
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.+++..|.+.|.+|.|||.||.+..-
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHH
Confidence 35688999999999999999877543
No 251
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.05 E-value=0.0033 Score=60.33 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=41.3
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|....+.++.+.+..-...-..|.|+|.+|+|||++|+.+++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 3456789999999998887765333444678999999999999999988743
No 252
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.05 E-value=0.0018 Score=58.86 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCC---ceEEEeecccccCCCCCHHHHHH--HHHHHHhcCCCchhhHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFE---GSCFLQNVREESQRPGGLGCLQQ--KLLSKLLQDHNVIPDIALSFRR 237 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~--~ll~~l~~~~~~~~~~~~l~~~ 237 (279)
-..|.|+|+.|.||||+++.+...+....+ ..+.+.+.-+.. +..+.. ....+.....+.......++..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~-----~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV-----YDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe-----ccccccccceeeeeeccccccCHHHHHHHH
Confidence 459999999999999999999988755433 233333222211 111100 0000100001223455677889
Q ss_pred hCCCcEEEEEeCCCChHHHHHHhhc
Q 047481 238 LSSRKFLIVLDDVTCFKQIKSLIRS 262 (279)
Q Consensus 238 l~~k~~LlVlDdv~~~~~~~~l~~~ 262 (279)
|+..+-.+++..+.+.+.....+..
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHH
Confidence 9999999999999888877654433
No 253
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.03 E-value=0.00051 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999999863
No 254
>PRK00625 shikimate kinase; Provisional
Probab=97.03 E-value=0.00048 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.++||+|+||||+++.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 255
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.03 E-value=0.002 Score=60.03 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=55.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCch---h--
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVI---P-- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~---~-- 229 (279)
-+-++|.|.+|+|||||+..++.....+....+.+..+++ +......+.+.++..-... .+.. +
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4589999999999999999998887655444444443332 2456666776666532211 1111 1
Q ss_pred ---hHHHHHHHh---CCCcEEEEEeCCCC
Q 047481 230 ---DIALSFRRL---SSRKFLIVLDDVTC 252 (279)
Q Consensus 230 ---~~~~l~~~l---~~k~~LlVlDdv~~ 252 (279)
..-.+.+++ +++.+||++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 122345555 67999999999954
No 256
>PRK04040 adenylate kinase; Provisional
Probab=97.03 E-value=0.00068 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|+|+|++|+||||+++.+...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999999874
No 257
>PTZ00301 uridine kinase; Provisional
Probab=97.01 E-value=0.00063 Score=57.12 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=24.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+|||.|.+|.||||||+.+..++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999998876543
No 258
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.01 E-value=0.0043 Score=54.51 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35699999999999999999999887543
No 259
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.01 E-value=0.00039 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=21.7
Q ss_pred EEEeecccchHHHHHHHHHHHhhcC
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
|-|+|.+|+|||+||+.++..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999999887654
No 260
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.00 E-value=0.00054 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|+|.|.+|+||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 261
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.00 E-value=0.0019 Score=52.42 Aligned_cols=34 Identities=35% Similarity=0.443 Sum_probs=25.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
-.+++|.|..|.|||||.+.++..... ..+.+++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEE
Confidence 448999999999999999999876432 3444444
No 262
>PRK14528 adenylate kinase; Provisional
Probab=97.00 E-value=0.0041 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.|.|++|+||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998775
No 263
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.00 E-value=0.00045 Score=52.93 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=20.2
Q ss_pred EEEeecccchHHHHHHHHHHHhhcCCCc
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSNFEG 193 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~f~~ 193 (279)
|.|+|.+|+||||||+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 5789999999999999999998777654
No 264
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.00 E-value=0.0026 Score=60.67 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 138 NKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....++|....++++.+.+..-...-..|.|+|..|+|||++|+.++....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 346789999999988888766444455788999999999999999988744
No 265
>PF14516 AAA_35: AAA-like domain
Probab=97.00 E-value=0.016 Score=52.17 Aligned_cols=112 Identities=8% Similarity=0.133 Sum_probs=67.8
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCC-CCCHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQR-PGGLGCLQ 214 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~-~~~~~~l~ 214 (279)
.+.+..|.|...-+++.+.|... ...+.|.|+..+|||+|...+.+..... |. ++++ ++...... ..+...+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~i-d~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYI-DLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEE-EeecCCCcccCCHHHHH
Confidence 45556788886666666666532 3388999999999999999999987654 33 3343 33333221 23455555
Q ss_pred HHHHHHHhcC----C-----------CchhhHHHHHHHh-C--CCcEEEEEeCCCCh
Q 047481 215 QKLLSKLLQD----H-----------NVIPDIALSFRRL-S--SRKFLIVLDDVTCF 253 (279)
Q Consensus 215 ~~ll~~l~~~----~-----------~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~ 253 (279)
+.+...+... . ........+.+.+ . +++++|+||+|+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 5555444333 1 1112223344432 2 68999999999743
No 266
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0032 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-|.|.|.+|.||||+|+.+..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999984
No 267
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.17 Score=46.53 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+.+|-.+|.-|.||||.|-++++.+..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 34678999999999999999999998876
No 268
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.98 E-value=0.0065 Score=53.31 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEE
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCF 196 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 196 (279)
.++.+|.|.|.+|.|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468899999999999999999999998766544333
No 269
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.97 E-value=0.046 Score=50.83 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=44.7
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh-cCCCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS-SNFEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
..|...-+..|..++. +-....++.|-|.||+|||++|..++..+. .+-..++|+. . +-....+...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l------Em~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L------EMSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C------CCCHHHHHHHHHHH
Confidence 4555555666666654 333455888899999999999999997764 3223344553 1 33445555555543
No 270
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.97 E-value=0.014 Score=50.76 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=28.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
..++.|.|.+|+|||||+.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4588899999999999999998886544 34555664
No 271
>PRK13947 shikimate kinase; Provisional
Probab=96.97 E-value=0.00058 Score=55.09 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.|.|+||+|+||||+|+.++..+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999987543
No 272
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.96 E-value=0.0013 Score=52.11 Aligned_cols=86 Identities=23% Similarity=0.219 Sum_probs=44.6
Q ss_pred EeecccchHHHHHHHHHHHhhcCCCceEEEe---ecccccCCCCCHHHHHHHHHHHHhcC--CCchhhHHHHHHHhCC--
Q 047481 168 IWGIGGIGKTTIARAIFNNISSNFEGSCFLQ---NVREESQRPGGLGCLQQKLLSKLLQD--HNVIPDIALSFRRLSS-- 240 (279)
Q Consensus 168 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~--~~~~~~~~~l~~~l~~-- 240 (279)
|.|+||+||||+|+.++.++. | +.++ .+++... ..+ .+..++...+... -..+.....+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~-~~s--~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIK-SDS--ELGKQIQEYLDNGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHH-TTS--HHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHh-hhh--HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 689999999999999999852 2 2332 1111111 111 1122222222212 1223344555555542
Q ss_pred CcEEEEEeCCC-ChHHHHHHhh
Q 047481 241 RKFLIVLDDVT-CFKQIKSLIR 261 (279)
Q Consensus 241 k~~LlVlDdv~-~~~~~~~l~~ 261 (279)
..--+|||+.. +.+|.+.|..
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHHH
Confidence 35668899994 4566666554
No 273
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.96 E-value=0.00087 Score=56.06 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=24.4
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+...+|+|+|++|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999998754
No 274
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.96 E-value=0.0022 Score=59.32 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=50.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh----
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD---- 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~---- 230 (279)
...++|.|..|+|||||++.++..... +..|+.. ++ ++......+.+.++..-... .+....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~l-IG---ER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVGL-VG---ERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEEE-Ec---CChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 458999999999999999998865332 4455542 32 32445555555554431111 121111
Q ss_pred ----HHHHHHHh--CCCcEEEEEeCCCC
Q 047481 231 ----IALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 231 ----~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
.-.+.+++ +++.+||++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12244555 57999999999954
No 275
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.95 E-value=0.0007 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=23.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+..+|.|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998775
No 276
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.95 E-value=0.0049 Score=53.61 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=54.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh----cCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS----SNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~ 230 (279)
-+-++|.|-.|+|||+|+..+.++.. .+-+.++|.. +-++......+.+++...-... .+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~----IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA----MGITMEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE----eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 45789999999999999999887753 1234455554 3333556667777766542211 111111
Q ss_pred --------HHHHHHHhC---CCcEEEEEeCCCCh
Q 047481 231 --------IALSFRRLS---SRKFLIVLDDVTCF 253 (279)
Q Consensus 231 --------~~~l~~~l~---~k~~LlVlDdv~~~ 253 (279)
.-.+.++++ ++.+|+++||+...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 233455553 68999999999543
No 277
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.95 E-value=0.0016 Score=56.49 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..-.++.|.|.+|+|||+||.+++.....+-+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44678999999999999999998776544555677776
No 278
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0015 Score=53.29 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=25.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
-.+++|.|..|.|||||++.++.... ...+.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 44899999999999999999986532 23444544
No 279
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.93 E-value=0.0064 Score=54.13 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=34.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC------CCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN------FEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 198 (279)
.+..+|..+-....++-|+|.+|+|||+||.+++...... =..++|+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 4555665444456788999999999999999998775421 12567776
No 280
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.93 E-value=0.004 Score=55.97 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
++|....+.++.+.+..-...-..|.|+|.+|+||+++|+.++..-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 46777777777776654333344678999999999999999987643
No 281
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.024 Score=53.77 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+|+|+|++|+||||++..++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999998875443
No 282
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93 E-value=0.0013 Score=54.10 Aligned_cols=95 Identities=19% Similarity=0.099 Sum_probs=53.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
...++|.|..|.|||||++.+...+... ...+.+.+..+..........+. .................++..++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~lR~~p 101 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWVRLV--TRPGNVEGSGEVTMADLLRSALRMRP 101 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEEEEE--EecCCCCCCCccCHHHHHHHHhccCC
Confidence 3489999999999999999998876532 23344433222111000000000 00000000111234566777888888
Q ss_pred EEEEEeCCCChHHHHHHh
Q 047481 243 FLIVLDDVTCFKQIKSLI 260 (279)
Q Consensus 243 ~LlVlDdv~~~~~~~~l~ 260 (279)
=.++++.+.+.+.+..+.
T Consensus 102 d~i~igEir~~ea~~~~~ 119 (186)
T cd01130 102 DRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred CEEEEEccCcHHHHHHHH
Confidence 999999998887665443
No 283
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.93 E-value=0.0034 Score=54.36 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=37.9
Q ss_pred HHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 153 ESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 153 ~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.++|..+-+.-+++.|+|.+|+|||++|.++........+.++|+.
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3344444456779999999999999999999999888888888887
No 284
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.93 E-value=0.004 Score=58.12 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=54.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh----
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP---- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~---- 229 (279)
-+-++|.|.+|+|||||+..++.....+ -+.++|.. ++ ++......+.+.++..-... .+...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iG---ER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VG---ERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CC---cchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 4589999999999999999999887643 34445543 33 33456666666665432111 12111
Q ss_pred ----hHHHHHHHh---CCCcEEEEEeCCCC
Q 047481 230 ----DIALSFRRL---SSRKFLIVLDDVTC 252 (279)
Q Consensus 230 ----~~~~l~~~l---~~k~~LlVlDdv~~ 252 (279)
..-.+.+++ .++.+||++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 123345555 37899999999943
No 285
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.93 E-value=0.0083 Score=54.12 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=35.5
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc--C---C-CceEEEe
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS--N---F-EGSCFLQ 198 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~--~---f-~~~~~~~ 198 (279)
-...|..+|..+-....++-|+|.+|+|||+||..++-.... . - ..++|++
T Consensus 108 G~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 108 GSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred CCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 344566666655556778999999999999999988865321 1 1 2467776
No 286
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.92 E-value=0.0031 Score=58.61 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=55.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCch---h--
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVI---P-- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~---~-- 229 (279)
-+-++|.|.+|+|||||+..+......+...++.+..+++ +......+.+.++..-... .+.. +
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE---R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC---CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4589999999999999999999876554444444443433 2455666776665432111 1211 1
Q ss_pred ---hHHHHHHHh---CCCcEEEEEeCCCCh
Q 047481 230 ---DIALSFRRL---SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ---~~~~l~~~l---~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 123345566 468999999999543
No 287
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.92 E-value=0.0012 Score=55.52 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=50.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh-----
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD----- 230 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~----- 230 (279)
+-++|.|.+|+|||+|+..+.+.... +..+++. +.++...+..+.+++...-..+ .+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 47899999999999999999998743 3335554 2222345556666554331111 221111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 ---IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 ---~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+|+++||+...
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHH
Confidence 12223333 689999999999543
No 288
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.92 E-value=0.0037 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=22.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.|.++|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999887643
No 289
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.91 E-value=0.011 Score=52.65 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc------CCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS------NFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 198 (279)
..|..+|..+-..-.++-|+|++|+|||+||.+++-...- .=..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 4456667655556779999999999999999988754321 123567775
No 290
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0046 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 291
>PRK06547 hypothetical protein; Provisional
Probab=96.90 E-value=0.0014 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
....+|+|.|++|+||||||+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999874
No 292
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.90 E-value=0.0045 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-|.|.|++|+||||+|+.++..+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998875
No 293
>PRK14527 adenylate kinase; Provisional
Probab=96.89 E-value=0.0047 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|+|++|.||||+|+.++.++
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 294
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0022 Score=51.07 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=56.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhc---CCCchhhHHHHHHHhC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ---DHNVIPDIALSFRRLS 239 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~---~~~~~~~~~~l~~~l~ 239 (279)
-.+++|.|..|.|||||++.+...+. ...+.+++... .... ....... ..+.- -..-+.....+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~--~~~~~~~----~~i~~~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK--LPLEELR----RRIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc--CCHHHHH----hceEEEeeCCHHHHHHHHHHHHHh
Confidence 35899999999999999999987654 34556666421 1110 0011111 11110 0111223344555666
Q ss_pred CCcEEEEEeCCC---ChHH---HHHHhhcCCCCCCCeEEEEEecc
Q 047481 240 SRKFLIVLDDVT---CFKQ---IKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 240 ~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
..+-+++||+.. |... +..++.... ..+..+|++|.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~ 139 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHD 139 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCC
Confidence 678889999984 3332 333332222 224667777754
No 295
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.86 E-value=0.0022 Score=58.25 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=58.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
..+=+-|||..|.|||.|.-.+|+.+...-...+ ....+...+-..+............+.+.+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~-------------HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV-------------HFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccc-------------cccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 4677899999999999999999998654222111 112233333333332222223344556677777
Q ss_pred cEEEEEeCC--CChHH---HHHHhhcCCCCCCCeEEEEEe
Q 047481 242 KFLIVLDDV--TCFKQ---IKSLIRSHDWYMAESRIIITT 276 (279)
Q Consensus 242 ~~LlVlDdv--~~~~~---~~~l~~~~~~~~~gsrIiiTT 276 (279)
-.||.+|++ .|..+ +..|+..+ +..|..+|.||
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gvvlVaTS 165 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEAL--FKRGVVLVATS 165 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHH--HHCCCEEEecC
Confidence 779999987 34333 55555544 24566444444
No 296
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.85 E-value=0.0017 Score=52.65 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+|.|.|++|+||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999998754
No 297
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.85 E-value=0.0034 Score=59.83 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
-.-|+|+|+.|+|||||.+.+.....
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 45799999999999999999977643
No 298
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.021 Score=50.94 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=39.4
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..++|.+...+.+...+..+ .-.....++|+.|+||+++|..++..+.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 45789998888888888643 1246889999999999999999998853
No 299
>PRK08356 hypothetical protein; Provisional
Probab=96.84 E-value=0.0066 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEEeecccchHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIF 184 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~ 184 (279)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 300
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.83 E-value=0.0051 Score=57.06 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=50.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
.-+.++|.|..|+|||||++.++..... +..++.. + .++......+....+..-... .|....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-i---GER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-I---GERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-E---ecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 3568899999999999999998876543 3444432 2 222444555554444331111 221111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCC
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
.-.+.+++ +++.+||++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 12244455 57999999999944
No 301
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.83 E-value=0.0055 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999998875
No 302
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.82 E-value=0.002 Score=63.03 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+-|.++|++|+|||++|+.++......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 348899999999999999999886544
No 303
>PRK08506 replicative DNA helicase; Provisional
Probab=96.81 E-value=0.02 Score=54.13 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=45.7
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHH
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKL 221 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 221 (279)
..|...-+..|..++. +-.+..++.|-|.||+|||++|..++..+..+-..++|+. - +-....+...++...
T Consensus 172 ~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------l-EMs~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------L-EMPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------C-cCCHHHHHHHHHHHh
Confidence 4555555666666542 3334558888899999999999999988654323344543 1 344556666665543
No 304
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.81 E-value=0.0015 Score=53.44 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=22.4
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.81 E-value=0.0076 Score=51.87 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|..|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998764
No 306
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.81 E-value=0.0095 Score=48.23 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=42.8
Q ss_pred EEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC---CCchhhHHHHHHHhCC--
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD---HNVIPDIALSFRRLSS-- 240 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~---~~~~~~~~~l~~~l~~-- 240 (279)
+.|.|.+|+|||++|.++... .....+|+... + ..+. .+++.+....... ....+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~-~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----E-AFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----C-cCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 578999999999999999765 23456666522 2 2322 3444443322111 2222333344444422
Q ss_pred CcEEEEEeCC
Q 047481 241 RKFLIVLDDV 250 (279)
Q Consensus 241 k~~LlVlDdv 250 (279)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337899988
No 307
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.079 Score=47.98 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=28.9
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
....+|-++|.-|.||||.+-++++.++.+--.++.++
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 45779999999999999999888888766533344443
No 308
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.80 E-value=0.006 Score=58.39 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-..++|+|+.|.|||||++.+...+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997553
No 309
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.80 E-value=0.0021 Score=50.38 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=27.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~ 198 (279)
++|.|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999999774 466555554
No 310
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0059 Score=49.46 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=25.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
-..++|.|..|.|||||++.++..... ..+.+++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 59 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKV 59 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE
Confidence 458999999999999999999875432 3344444
No 311
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0069 Score=52.00 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=32.4
Q ss_pred hHHHHHHHhCCCcEEEEEeCC----CC--hHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 230 DIALSFRRLSSRKFLIVLDDV----TC--FKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 230 ~~~~l~~~l~~k~~LlVlDdv----~~--~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
....+.+.|..++=||+||.= |. ...+-.++..+. ..|+-||++|-|
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHD 198 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHD 198 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCC
Confidence 346678889999999999965 22 233455555544 338889998875
No 312
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0021 Score=53.30 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
+...+|+|+|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3466999999999999999999999875543334555
No 313
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.78 E-value=0.0028 Score=56.40 Aligned_cols=93 Identities=22% Similarity=0.119 Sum_probs=53.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
...++|.|..|.|||||++.+...+... ...+.+.+..+......+...+.. .........-.....+...|+..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVHLFY---SKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEEEEe---cCCCCCcCccCHHHHHHHHhcCCC
Confidence 4589999999999999999998776433 234445443332210100000000 000000111223566777888889
Q ss_pred EEEEEeCCCChHHHHHH
Q 047481 243 FLIVLDDVTCFKQIKSL 259 (279)
Q Consensus 243 ~LlVlDdv~~~~~~~~l 259 (279)
=.|++|.+...+.+..+
T Consensus 220 d~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 220 DRIILGELRGDEAFDFI 236 (308)
T ss_pred CeEEEeccCCHHHHHHH
Confidence 99999999886655433
No 314
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.78 E-value=0.0012 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999988754
No 315
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.77 E-value=0.0028 Score=56.19 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=55.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC--CCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN--FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
..|.|+|..|.||||+++.+...+... -...+.+.+..+..-...+... +............++..|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEecCCCCCHHHHHHHHhcCC
Confidence 367799999999999999999887653 2234444443332210111100 000112224567788899999
Q ss_pred cEEEEEeCCCChHHHHHHh
Q 047481 242 KFLIVLDDVTCFKQIKSLI 260 (279)
Q Consensus 242 ~~LlVlDdv~~~~~~~~l~ 260 (279)
+=.||+..+.+.+.+..+.
T Consensus 205 pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred CCEEEEeccCCHHHHHHHH
Confidence 9999999998887665443
No 316
>PTZ00035 Rad51 protein; Provisional
Probab=96.77 E-value=0.02 Score=51.62 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=30.6
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..|..+|..+-..-.++.|+|.+|+|||||+..++-...
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 456667765555677999999999999999999876543
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.77 E-value=0.015 Score=45.93 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.0
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
+|.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998753
No 318
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.77 E-value=0.0046 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998875
No 319
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.77 E-value=0.0014 Score=61.36 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++|++..++.+...+..+. -|.|.|++|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 468999999999888776443 5789999999999999999987643
No 320
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.76 E-value=0.0021 Score=54.60 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
....+|+|.|++|.|||||++.+...+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999886543
No 321
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.76 E-value=0.0047 Score=59.76 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=46.7
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhC-
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLS- 239 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~- 239 (279)
++-.+..++|++|+||||||.-++++.. |. +..+. .+. ......+.+.+...+... ..|.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys----VvEIN-ASD-eRt~~~v~~kI~~avq~~-----------s~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS----VVEIN-ASD-ERTAPMVKEKIENAVQNH-----------SVLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce----EEEec-ccc-cccHHHHHHHHHHHHhhc-----------ccccc
Confidence 4467999999999999999999998842 22 11111 233 344445555554433322 1221
Q ss_pred -CCcEEEEEeCCCCh
Q 047481 240 -SRKFLIVLDDVTCF 253 (279)
Q Consensus 240 -~k~~LlVlDdv~~~ 253 (279)
.++.-||+|.++-.
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 57888999999754
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.013 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 323
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.76 E-value=0.0069 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 324
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.76 E-value=0.0028 Score=62.08 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=38.4
Q ss_pred CCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 138 NKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+.++|....+.++.+.+..-...-..|.|+|.+|+||+++|+.+++..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 34568999988888877765432333457899999999999999998764
No 325
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.021 Score=55.72 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=43.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
..=|.++|+||.|||-||++|+.++.-.| +. + .+.. +.+.... ++.+...+...+.=..++
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS----V----KGPE-LLNMYVG-----qSE~NVR~VFerAR~A~P 765 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNF-----LS----V----KGPE-LLNMYVG-----QSEENVREVFERARSAAP 765 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeE-----Ee----e----cCHH-HHHHHhc-----chHHHHHHHHHHhhccCC
Confidence 44678999999999999999998865443 32 1 1222 2221111 122222222333334689
Q ss_pred EEEEEeCCCCh
Q 047481 243 FLIVLDDVTCF 253 (279)
Q Consensus 243 ~LlVlDdv~~~ 253 (279)
++|.+|.+|..
T Consensus 766 CVIFFDELDSl 776 (953)
T KOG0736|consen 766 CVIFFDELDSL 776 (953)
T ss_pred eEEEecccccc
Confidence 99999999753
No 326
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.74 E-value=0.01 Score=58.79 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=58.9
Q ss_pred hhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--
Q 047481 148 RVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-- 224 (279)
Q Consensus 148 ~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-- 224 (279)
-+..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+..- . .+.. ..+..++-.
T Consensus 44 Gi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E----~-t~~~-----~~A~~lGvDl~ 113 (790)
T PRK09519 44 GSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE----H-ALDP-----DYAKKLGVDTD 113 (790)
T ss_pred CcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc----c-chhH-----HHHHHcCCChh
Confidence 3455666776 4445577899999999999999998877655555667787621 1 1221 233333221
Q ss_pred -------CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 225 -------HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 225 -------~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
.+.+.....+...++ ++.-|||+|-+.
T Consensus 114 ~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 114 SLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 333444555555554 467889999983
No 327
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.073 Score=46.70 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=58.2
Q ss_pred CCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCC
Q 047481 139 KNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPG 208 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 208 (279)
=...-|.+...+.|.+..-. ....-+-|.++|++|.||+.||++|+......| +. ++.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS----vSS--- 199 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS----VSS--- 199 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE----eeh---
Confidence 34577888888887775322 223467899999999999999999998865333 22 222
Q ss_pred CHHHHHHHHHHHHhcCCCchhhHHHHHHHhC-CCcEEEEEeCCCC
Q 047481 209 GLGCLQQKLLSKLLQDHNVIPDIALSFRRLS-SRKFLIVLDDVTC 252 (279)
Q Consensus 209 ~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 252 (279)
..+.... .+ ..+.+...+-+.-+ +|+-+|.+|.++.
T Consensus 200 --SDLvSKW----mG--ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 200 --SDLVSKW----MG--ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --HHHHHHH----hc--cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1122111 11 12233333444443 6899999999964
No 328
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.74 E-value=0.0011 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|.|.|++|+||||+|+.+...+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998863
No 329
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.74 E-value=0.011 Score=51.44 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=50.6
Q ss_pred eEEEEEeecccchHHHHH-HHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCc--hhh-
Q 047481 163 VYALGIWGIGGIGKTTIA-RAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNV--IPD- 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA-~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~--~~~- 230 (279)
-+-++|.|.+|+|||+|| ..+.++. +-+..|.+..+++ +......+.+.+...-... .+. ...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGe---r~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQ---KASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEeccc---chHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 457899999999999996 5555543 3345544443333 2445666776666432211 111 110
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+||++||+...
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 12233444 478999999999544
No 330
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.73 E-value=0.016 Score=52.22 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=34.0
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc--C----CCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS--N----FEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~--~----f~~~~~~~ 198 (279)
..|..+|..+-..-.++-|+|.+|+|||+||.+++-...- . -..++|++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 3455566655455678899999999999999998754321 1 13567776
No 331
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.73 E-value=0.017 Score=50.07 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=54.5
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh--cC---CC-ceEEEeecccccCCCCCHHHHHHHHHHHHh-
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS--SN---FE-GSCFLQNVREESQRPGGLGCLQQKLLSKLL- 222 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~--~~---f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~- 222 (279)
..|.++|..+-....+.=|+|.+|+|||.||.+++-... .. .+ .++|++. .. .+....+.+ ++....
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT----e~-~f~~~Rl~~-i~~~~~~ 98 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT----EG-TFSPERLQQ-IAERFGL 98 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES----SS-SS-HHHHHH-HHHHTTS
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC----CC-CCCHHHHHH-Hhhcccc
Confidence 356666654433456889999999999999999876542 21 22 3667752 11 455555543 333211
Q ss_pred ------cC------CCchhhHHHH---HHHh-CCCcEEEEEeCC
Q 047481 223 ------QD------HNVIPDIALS---FRRL-SSRKFLIVLDDV 250 (279)
Q Consensus 223 ------~~------~~~~~~~~~l---~~~l-~~k~~LlVlDdv 250 (279)
.. .+.++....+ ...+ .++--|||+|.+
T Consensus 99 ~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 99 DPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp -HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred ccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 11 2333333333 2223 356779999999
No 332
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.72 E-value=0.034 Score=48.50 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=73.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
...+.|+|-.. ..++..++.......+.+.++|+.|+|||+-++.+++.. +..+.+. .+. .+....+...
T Consensus 69 ~~~~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~----~~p-~~~a~~~i~~ 138 (297)
T COG2842 69 KLAPDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PNALLIE----ADP-SYTALVLILI 138 (297)
T ss_pred cccccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----ccceeec----CCh-hhHHHHHHHH
Confidence 45567777654 333444554433444588899999999999999887663 3333333 333 4455555555
Q ss_pred HHHHHhcC--CCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhc
Q 047481 217 LLSKLLQD--HNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRS 262 (279)
Q Consensus 217 ll~~l~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~ 262 (279)
+....+.. .........+..++++..-+++.|+.+.. ..++.+...
T Consensus 139 i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 139 ICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHH
Confidence 55555444 33445567777788999999999998754 335554443
No 333
>PRK14531 adenylate kinase; Provisional
Probab=96.72 E-value=0.01 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.|+|++|.||||+++.++..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998885
No 334
>PRK08149 ATP synthase SpaL; Validated
Probab=96.72 E-value=0.006 Score=56.44 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=52.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh----
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP---- 229 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~---- 229 (279)
....++|.|.+|+|||||+..++.... -+..++.. +..+...+..+....+...... .+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~--~dv~v~g~----Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE--ADVFVIGL----IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC--CCeEEEEE----EeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 345899999999999999998876532 23333322 2222556666666666542211 12111
Q ss_pred ----hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ----DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ----~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+-..
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112234444 589999999999543
No 335
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.71 E-value=0.022 Score=48.57 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=28.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
.-.++.|.|.+|+|||++|.+++.+...+ =..++|+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 44688999999999999999998876544 34455554
No 336
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.71 E-value=0.012 Score=49.39 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-..++|.|..|.|||||++.++...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998653
No 337
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.71 E-value=0.0094 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-..++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 338
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.0019 Score=54.31 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.+.+.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999998743
No 339
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.70 E-value=0.019 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+.|.|.+|+||||+|..+..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 57899999999999999998774
No 340
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.70 E-value=0.0049 Score=52.91 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=30.2
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..++...+.....+..+|||.|+||.|||||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344555555444567899999999999999999998876543
No 341
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.70 E-value=0.015 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=20.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+..|+|+||+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999988754
No 342
>PRK02496 adk adenylate kinase; Provisional
Probab=96.69 E-value=0.0072 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-+.|.|++|.||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37789999999999999998875
No 343
>PRK08006 replicative DNA helicase; Provisional
Probab=96.69 E-value=0.024 Score=53.45 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=44.2
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
..|...-...|..++. +-....++.|-|.||+|||++|..++..+.. +-..++|+. - +-....+...++..
T Consensus 204 ~~Gi~TG~~~LD~~~~-Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS------l-EM~~~ql~~Rlla~ 275 (471)
T PRK08006 204 VTGVNTGYDDLNKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS------L-EMPGEQIMMRMLAS 275 (471)
T ss_pred CCcccCCCHHHHHhhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe------c-cCCHHHHHHHHHHH
Confidence 4455555555555442 2234557888899999999999999987642 222334443 1 34455666666655
Q ss_pred H
Q 047481 221 L 221 (279)
Q Consensus 221 l 221 (279)
.
T Consensus 276 ~ 276 (471)
T PRK08006 276 L 276 (471)
T ss_pred h
Confidence 4
No 344
>PRK13949 shikimate kinase; Provisional
Probab=96.69 E-value=0.0013 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.|+|++|.|||||++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 345
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.68 E-value=0.0013 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEeecccchHHHHHHHHHHHhh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
|.|+|++|.||||||+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999998863
No 346
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.68 E-value=0.0036 Score=58.16 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=54.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh----
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP---- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~---- 229 (279)
-+-++|.|.+|+|||+|+..+...... +-+.++|.. + .++......+.+.+...-... .+...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-i---GeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-I---GERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-e---ccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 458999999999999999999887642 235556553 3 333455666666665432111 12111
Q ss_pred ----hHHHHHHHhC---CCcEEEEEeCCCCh
Q 047481 230 ----DIALSFRRLS---SRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ----~~~~l~~~l~---~k~~LlVlDdv~~~ 253 (279)
..-.+.++++ ++.+||++||+-..
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1233455654 58999999999543
No 347
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.0012 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.8
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.|.|++|.||||||+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998864
No 348
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0096 Score=51.24 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=35.6
Q ss_pred cccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 143 VGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
=|-..+++.|.+.... +-+...-|.++|++|.|||-+|++++++- ..||+.
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 3555666666554332 22446678899999999999999999874 356665
No 349
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.66 E-value=0.0023 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|.+.|.-|.|||||++.++..+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34899999999999999999999853
No 350
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0017 Score=62.51 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=43.3
Q ss_pred CCccccchhhHHHHHhhcc----CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCC
Q 047481 140 NPLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFE 192 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~ 192 (279)
..-+|+++-.++|.+++.- ++-+..+++.+|+||+|||.+|+.++..+...|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 3458999888888888743 3445779999999999999999999999877653
No 351
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.65 E-value=0.018 Score=49.74 Aligned_cols=67 Identities=24% Similarity=0.167 Sum_probs=42.2
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC-CceEEEeecccccCCCCCHHHHHHHHHHHHhc
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF-EGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ 223 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 223 (279)
...|.+.+. +-..-.++.|-|.+|+|||++|..++.++..+- ..+.|+. . +-+...+...++.....
T Consensus 6 ~~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S----l---Em~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 6 FPALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS----L---EMSEEELAARLLARLSG 73 (259)
T ss_dssp THHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE----S---SS-HHHHHHHHHHHHHT
T ss_pred hHHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc----C---CCCHHHHHHHHHHHhhc
Confidence 344455553 212234777889999999999999999876653 5555654 1 44556677777665543
No 352
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.64 E-value=0.0013 Score=54.52 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.2
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 353
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.64 E-value=0.0041 Score=59.13 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=50.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHHHHHHHHhcC-CC--ch------hhHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-HN--VI------PDIA 232 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~--~~------~~~~ 232 (279)
-+-.+|+|++|+|||||++.+++.+..+ -++.|++..+.+- ...+..+...+-..+... .+ .. ...-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER---peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER---PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc---hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999987543 3444445444332 333333332220111111 11 11 1112
Q ss_pred HHHHHh--CCCcEEEEEeCCCChH
Q 047481 233 LSFRRL--SSRKFLIVLDDVTCFK 254 (279)
Q Consensus 233 ~l~~~l--~~k~~LlVlDdv~~~~ 254 (279)
.+.+++ .++.+||++|++....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHH
Confidence 234444 5799999999996543
No 354
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.63 E-value=0.0028 Score=63.84 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=64.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCC----CceEEEe--ecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNF----EGSCFLQ--NVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRR 237 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~--~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~ 237 (279)
.-+.|+|.+|.||||+...++-....+. +..+++. ............ .+...+...+..............+.
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcchhhHHHHHH
Confidence 3788999999999999999988754432 2333332 111111100111 33333333333333333334444678
Q ss_pred hCCCcEEEEEeCCCChHH---------HHHHhhcCCCCCCCeEEEEEecc
Q 047481 238 LSSRKFLIVLDDVTCFKQ---------IKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 238 l~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+...++|+++|.++.... +..+.+.. +.+.+|+|+|.
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~ 347 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRP 347 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEecc
Confidence 899999999999976431 23333333 48999999984
No 355
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.0042 Score=53.23 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=37.9
Q ss_pred CCccccchhhH---HHHHhhccC----CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVE---EIESLLGAE----SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~---~l~~~L~~~----~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
+..+|.+.... -|++.|... ....+.|..+|++|.|||.+|+++++....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 46788876543 366777642 345789999999999999999999988543
No 356
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.62 E-value=0.0013 Score=55.57 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=22.0
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|||.|.+|.||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998875
No 357
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.61 E-value=0.01 Score=48.44 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|.|..|.|||||++.++...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998764
No 358
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.61 E-value=0.0014 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998873
No 359
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.60 E-value=0.016 Score=51.69 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=57.1
Q ss_pred hhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--
Q 047481 148 RVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-- 224 (279)
Q Consensus 148 ~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-- 224 (279)
-...|...|. .+-+.-+++-|+|+.|+||||||..+.......-..++|+.. .. .. -...+..++-.
T Consensus 37 G~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~----e~-~l-----d~~~a~~lGvdl~ 106 (322)
T PF00154_consen 37 GSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA----EH-AL-----DPEYAESLGVDLD 106 (322)
T ss_dssp S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES----SS---------HHHHHHTT--GG
T ss_pred CCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC----cc-cc-----hhhHHHhcCcccc
Confidence 3445556665 233346699999999999999999999887766666778862 11 12 22333333221
Q ss_pred -------CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 225 -------HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 225 -------~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
...++....+...++ +..-++|+|-|-
T Consensus 107 rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 107 RLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp GEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CT
T ss_pred ceEEecCCcHHHHHHHHHHHhhcccccEEEEecCc
Confidence 334555666666665 456789999983
No 360
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.60 E-value=0.0023 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.7
Q ss_pred EEEeecccchHHHHHHHHHHHhhc
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
|.|.|.+|+|||||++.++..+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 361
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.59 E-value=0.0017 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.9
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.++.|.|++|+|||||++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988753
No 362
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.59 E-value=0.004 Score=57.90 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|.++|.+|+||||+|.+++.++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999885
No 363
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0048 Score=58.60 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=43.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHh-CCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRL-SSR 241 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-~~k 241 (279)
..=|.+||+||+|||-||+++++....+| +. + .+. .|++.. .+ ..+..+..+-++- ..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is----V----KGP-ELlNkY----VG--ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS----V----KGP-ELLNKY----VG--ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee----e----cCH-HHHHHH----hh--hHHHHHHHHHHHhhcCC
Confidence 55678999999999999999999977665 32 1 111 122211 11 1122333333333 367
Q ss_pred cEEEEEeCCCC
Q 047481 242 KFLIVLDDVTC 252 (279)
Q Consensus 242 ~~LlVlDdv~~ 252 (279)
+++|.+|.++.
T Consensus 605 PCVIFFDEiDa 615 (802)
T KOG0733|consen 605 PCVIFFDEIDA 615 (802)
T ss_pred CeEEEecchhh
Confidence 99999999964
No 364
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.59 E-value=0.0033 Score=53.15 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
.|.++|..+-..-.++.|.|.+|+|||+||.++......+ =+.++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3455564443445699999999999999999988765555 55566775
No 365
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.58 E-value=0.0069 Score=59.70 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-..|+|+|..|+|||||++.+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998764
No 366
>PRK13948 shikimate kinase; Provisional
Probab=96.58 E-value=0.0018 Score=53.15 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+.|.++||.|+||||+++.++.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568889999999999999999988643
No 367
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.58 E-value=0.021 Score=46.81 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.4
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
++.|.|++|+||||++..++..+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999999988654
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.57 E-value=0.0015 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999885
No 369
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.55 E-value=0.0064 Score=56.36 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=51.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
..+.++|.|..|+|||||.+.+++.... +.+++.. ++ ++......+.+..+..-... .+....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~l-iG---ERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLAL-IG---ERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCCC--CEEEEEE-Ec---cCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 3568999999999999999999887543 3444443 32 22344555554433321111 121111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+||++||+...
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12244444 589999999999543
No 370
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.55 E-value=0.024 Score=50.64 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=30.7
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-...|..+|..+-....++.|+|.+|+||||||..++..
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 344566667655556789999999999999999998864
No 371
>PRK08840 replicative DNA helicase; Provisional
Probab=96.54 E-value=0.036 Score=52.18 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=43.8
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
..|...-...|..++. +-.....+.|-|.||+|||++|..++..... +-..++|+. - +-....+...++..
T Consensus 197 ~~gi~TG~~~LD~~~~-G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS------l-EMs~~ql~~Rlla~ 268 (464)
T PRK08840 197 VTGVDTGFTDLNKKTA-GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS------L-EMPAEQLMMRMLAS 268 (464)
T ss_pred CCCcCCCcHHHHHhhc-CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe------c-cCCHHHHHHHHHHh
Confidence 4555555555555442 2234457788899999999999999887642 222333433 1 34455666666655
Q ss_pred H
Q 047481 221 L 221 (279)
Q Consensus 221 l 221 (279)
.
T Consensus 269 ~ 269 (464)
T PRK08840 269 L 269 (464)
T ss_pred h
Confidence 3
No 372
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.52 E-value=0.12 Score=45.18 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++++|.+|+||||++..+...+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 469999999999999999999887654
No 373
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.52 E-value=0.0024 Score=51.67 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=33.0
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
++|....+.++.+.+..-......|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4677788888877775532233567799999999999999998853
No 374
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.52 E-value=0.0011 Score=54.49 Aligned_cols=21 Identities=29% Similarity=0.091 Sum_probs=18.6
Q ss_pred EEEEeecccchHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~ 185 (279)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999984
No 375
>PRK14529 adenylate kinase; Provisional
Probab=96.52 E-value=0.018 Score=48.77 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=47.7
Q ss_pred EEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC-cE
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR-KF 243 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k-~~ 243 (279)
|.|.|++|+||||+|+.++..+.-. ....-.+. +.-.....+....+.++.. +..-..+.....+.+.+.+. .-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr---~~i~~~t~lg~~i~~~i~~-G~lvpdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFR---EHIGGGTELGKKAKEYIDR-GDLVPDDITIPMILETLKQDGKN 78 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhh---hhccCCChHHHHHHHHHhc-cCcchHHHHHHHHHHHHhccCCC
Confidence 6789999999999999999886422 22111111 1101011122222222221 11122333456666666432 45
Q ss_pred EEEEeCCC-ChHHHHHHh
Q 047481 244 LIVLDDVT-CFKQIKSLI 260 (279)
Q Consensus 244 LlVlDdv~-~~~~~~~l~ 260 (279)
-+|||... +..|.+.|.
T Consensus 79 g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 79 GWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred cEEEeCCCCCHHHHHHHH
Confidence 69999994 456655543
No 376
>PRK13946 shikimate kinase; Provisional
Probab=96.52 E-value=0.0019 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..|.+.|++|+||||+++.++.++.-
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47899999999999999999998743
No 377
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.52 E-value=0.0016 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.|+|+|++|+|||||++.+...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998875443
No 378
>PRK05439 pantothenate kinase; Provisional
Probab=96.52 E-value=0.0089 Score=53.10 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....-+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345779999999999999999999887643
No 379
>PRK14530 adenylate kinase; Provisional
Probab=96.50 E-value=0.002 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998886
No 380
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.50 E-value=0.0083 Score=55.76 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=48.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC-------CCchh-----
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD-------HNVIP----- 229 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-------~~~~~----- 229 (279)
.-..++|+|.+|+|||||++.+...... ..+.+++. .++...+..+....+...... .+...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~li-----Gergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALV-----GERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-Ceeeeeec-----ccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHH
Confidence 3458999999999999999887654322 22223332 111344555544444433211 12111
Q ss_pred ---hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ---DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ---~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+...
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 112244444 478999999999543
No 381
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.50 E-value=0.0034 Score=54.78 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=32.3
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.++...+........+|||.|.||+|||||..++..++..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 34555555555668899999999999999999998886544
No 382
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.03 Score=55.39 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+++++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 46999999999999999999998763
No 383
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.031 Score=45.87 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-..+-++|++|.|||||.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34588999999999999999999863
No 384
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.47 E-value=0.0087 Score=54.59 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=58.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCC--ceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFE--GSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
..+.|+|+.|.||||++..+...+..... ..+-+++.-+..- .+...+....-.++. .+.......++..|+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~~~~~q~evg--~~~~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDLLPPAQSQIG--RDVDSFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCceeecccccccC--CCccCHHHHHHHhhccC
Confidence 36889999999999999999888754432 3344443322211 011111000001111 22334567788899999
Q ss_pred cEEEEEeCCCChHHHHHHhhc
Q 047481 242 KFLIVLDDVTCFKQIKSLIRS 262 (279)
Q Consensus 242 ~~LlVlDdv~~~~~~~~l~~~ 262 (279)
+=.|+++++.+.+.++..+..
T Consensus 226 PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 226 PKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred CCEEeeCCCCCHHHHHHHHHH
Confidence 999999999998887764433
No 385
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.45 E-value=0.0036 Score=50.76 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45699999999999999999999887653
No 386
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.45 E-value=0.0053 Score=51.44 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=23.8
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+.+...+... .+..|+|+||.||||++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 344455555432 178899999999998777777766
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.04 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+++++|+.|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999988753
No 388
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.44 E-value=0.019 Score=54.71 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=38.8
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
-+..|.++|..+-..-.++.|.|.+|+|||+||.+++......-+.++|+.
T Consensus 258 Gi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 258 GVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred CcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345566666544445668889999999999999999887666667777775
No 389
>PLN02674 adenylate kinase
Probab=96.44 E-value=0.02 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|.|.|+||.||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999998875
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=96.43 E-value=0.012 Score=50.30 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.-.++.|.|.+|+|||+||.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458899999999999999999887655545556664
No 391
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.42 E-value=0.0029 Score=52.96 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.3
Q ss_pred hhccCCCCeEEEEEeecccchHHHHHHHHHHH
Q 047481 155 LLGAESKDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 155 ~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
|+..+....+.|.|+|++|+|||||++.+...
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34444456788999999999999999999754
No 392
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.002 Score=51.79 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEEeecccchHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIF 184 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~ 184 (279)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 393
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.41 E-value=0.02 Score=54.78 Aligned_cols=51 Identities=22% Similarity=0.120 Sum_probs=38.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.....++|....+.++.+.+..-...-..|.|+|..|+||++||+.++..-
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC
Confidence 455679999998888877765322223357899999999999999976653
No 394
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0026 Score=51.36 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
.|.++||.|.||||+.+.++..+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 577889999999999999999876655
No 395
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.41 E-value=0.011 Score=52.98 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=49.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh-----
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP----- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~----- 229 (279)
...++|.|..|.|||||.+.+...... +..++.. + .++...+..+....+..-... .+...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~--~~~vi~~-i---Ger~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA--DVNVIAL-I---GERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEE-E---ecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 457899999999999999988876543 2233322 1 111345555555554432111 11111
Q ss_pred ---hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ---DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ---~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+...
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 112233444 589999999998543
No 396
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.40 E-value=0.023 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
++..|.|.+|.||||++..+...+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999887643
No 397
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0026 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|.|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999999864
No 398
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.39 E-value=0.002 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.9
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|+|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4688999999999999999885
No 399
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.38 E-value=0.016 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.173 Sum_probs=22.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
++..|.|.+|.||||++..+...+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999998876543
No 400
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.38 E-value=0.0027 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..|.|+|++|.|||||++.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998753
No 401
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.37 E-value=0.0078 Score=53.99 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.0
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.+.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444444334457899999999999999999988876543
No 402
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.37 E-value=0.0033 Score=57.75 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.+-|.++|++|+|||+||+.++..+...
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3578899999999999999999987554
No 403
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.37 E-value=0.0076 Score=57.02 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=56.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
..++.|.|+.|.||||+...+.+.+...-...+-+.+.-+... .+...+ + +.. ..-......++..|+..+
T Consensus 242 ~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~~q~--~----v~~-~~g~~f~~~lr~~LR~dP 312 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGIGQI--Q----VNP-KIGLTFAAGLRAILRQDP 312 (486)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCCceE--E----Ecc-ccCccHHHHHHHHHhcCC
Confidence 3489999999999999999888876543333444543222111 111000 0 000 111234577888999999
Q ss_pred EEEEEeCCCChHHHHHHhhc
Q 047481 243 FLIVLDDVTCFKQIKSLIRS 262 (279)
Q Consensus 243 ~LlVlDdv~~~~~~~~l~~~ 262 (279)
=.|++.++.+.+.....+..
T Consensus 313 DvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 313 DIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred CEEEEeCCCCHHHHHHHHHH
Confidence 99999999998876554433
No 404
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.36 E-value=0.007 Score=58.83 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=43.4
Q ss_pred CCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeec
Q 047481 139 KNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNV 200 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~ 200 (279)
...++|.+..++.+...+..+. .+.++|++|+||||||+.+++.+... |...+++.|.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 3567888888887777776432 55589999999999999999987654 4555566544
No 405
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.35 E-value=0.0033 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=22.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|.|++|+||||+|+.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3588999999999999999999884
No 406
>PRK04182 cytidylate kinase; Provisional
Probab=96.35 E-value=0.0029 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=21.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|.|.|++|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998853
No 407
>PRK13975 thymidylate kinase; Provisional
Probab=96.35 E-value=0.0033 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..|.|.|+.|+||||+|+.++..+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998764
No 408
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.34 E-value=0.0028 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.|+|++|.||||+|+.++.++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998863
No 409
>PRK14526 adenylate kinase; Provisional
Probab=96.34 E-value=0.026 Score=47.39 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998764
No 410
>PHA02774 E1; Provisional
Probab=96.34 E-value=0.03 Score=53.50 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=30.0
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
-+..+..+|.. .++...+.|+|++|.|||.+|..+.+-+.
T Consensus 420 fl~~lk~~l~~-~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 420 FLTALKDFLKG-IPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555556542 23456899999999999999999998864
No 411
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.33 E-value=0.0046 Score=56.88 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=35.5
Q ss_pred CCccccchhhHHHHHhhcc---------C---CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA---------E---SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..++|.+.....+..++.. + ......|.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 3466777666666555532 0 0113578899999999999999999986544
No 412
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.33 E-value=0.0031 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|+|+|++|+|||||++.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45899999999999999999988753
No 413
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.33 E-value=0.0025 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+|+|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998864
No 414
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.32 E-value=0.0049 Score=53.86 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
++|+|+|.+|+|||||+..+...+..+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 4799999999999999999999988776 455554
No 415
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.31 E-value=0.0058 Score=58.91 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=34.4
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+-|.+-.+.|.++.........+|.|+|++|+||||+|+.++..+..
T Consensus 371 ~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 371 WFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 344444445555554444455668999999999999999999998764
No 416
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.31 E-value=0.016 Score=54.18 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=53.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC--C-CceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh--
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN--F-EGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP-- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~--f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~-- 229 (279)
-+-++|.|-.|+|||||+..+.++...+ + +.+|.+..+ -++......+.+.++..-... .+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~i---GERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAM---GITYEEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEc---cccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 4578999999999999999998875321 1 123333323 333556666766666432211 12111
Q ss_pred ------hHHHHHHHhC---CCcEEEEEeCCCCh
Q 047481 230 ------DIALSFRRLS---SRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ------~~~~l~~~l~---~k~~LlVlDdv~~~ 253 (279)
..-.+.++++ ++++||++||+-..
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 1233566665 68899999999543
No 417
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.31 E-value=0.0036 Score=51.21 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=29.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
.++|.|+|+.|+|||||++.+.......|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 35789999999999999999999988778544444
No 418
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.29 E-value=0.0033 Score=50.32 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=17.9
Q ss_pred EEEeecccchHHHHHHHHHHH
Q 047481 166 LGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~ 186 (279)
|+|.|.+|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 419
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.29 E-value=0.0062 Score=50.89 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=26.1
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++++|+++|..|+|||||..++......
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 346999999999999999999999887543
No 420
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0043 Score=58.87 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=24.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
....+.++|++|.|||.||+++++....+|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 455888999999999999999999655443
No 421
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.14 Score=47.46 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCce-E
Q 047481 117 ELVREVVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGS-C 195 (279)
Q Consensus 117 ~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~ 195 (279)
.-+.+++.+....+..... . ....|.......|..+... -.....|.+-|-||+|||++|..++..+...++.. .
T Consensus 154 ~~~~~~l~~~~~~i~~~~~-~--~~~~Gi~tgf~~LD~~t~G-~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~ 229 (435)
T COG0305 154 VHIGDLLKETMDEIEARFE-N--GGLIGVPTGFTDLDEITSG-FRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVA 229 (435)
T ss_pred hhHHHHHHHHHHHHHHHhc-c--CCCcccccCchhhHHHhcC-CccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeE
Confidence 3444444444444433321 1 1156666655555555442 23445888889999999999999999877665543 3
Q ss_pred EEeecccccCCCCCHHHHHHHHHHHHhcC---------CCch--hhHHHHHHHhCCCcEEEEEeCCCCh
Q 047481 196 FLQNVREESQRPGGLGCLQQKLLSKLLQD---------HNVI--PDIALSFRRLSSRKFLIVLDDVTCF 253 (279)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~---------~~~~--~~~~~l~~~l~~k~~LlVlDdv~~~ 253 (279)
++. - +-....+...++.....- .+.+ .........+++.+ |.+||....
T Consensus 230 iFS------L-EM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~--i~IdD~~~~ 289 (435)
T COG0305 230 IFS------L-EMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAP--IFIDDTPGL 289 (435)
T ss_pred EEE------c-cCCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCC--eeecCCCcC
Confidence 332 1 445566777766554322 1111 12333445566666 788888654
No 422
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.28 E-value=0.0053 Score=52.92 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=27.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEG 193 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~ 193 (279)
...+|.++||+|.||||..+.++.++..++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 45678889999999999999999998776554
No 423
>PRK05922 type III secretion system ATPase; Validated
Probab=96.26 E-value=0.014 Score=54.14 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=48.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCch---h--
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVI---P-- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~---~-- 229 (279)
-..++|.|..|+|||||.+.+...... +..++.. +++- .........+........ .+.. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~~--d~gvi~l-iGer---g~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSKS--TINVIAL-IGER---GREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC--CceEEEE-eCCC---CchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 457999999999999999988876432 3333322 1111 233344444444332221 1111 1
Q ss_pred ---hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ---DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ---~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+-..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112344555 479999999999543
No 424
>PTZ00494 tuzin-like protein; Provisional
Probab=96.26 E-value=0.13 Score=47.75 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhh-------------cccccCCCCCChh--HHHHHHHHHHHhhcccccC------CCCCCCCccccchh
Q 047481 90 KLQTWRNALKEAA-------------DLSGFHSQNIRPE--SELVREVVNQILKRLAEVS------PCSNKNPLVGVESR 148 (279)
Q Consensus 90 ~~~~wr~al~~~a-------------~l~g~~~~~~~~e--~~~i~~iv~~i~~~l~~~~------~~~~~~~~vGr~~~ 148 (279)
|-+.||.+|++-+ ..-||.+++...+ +....-.++...+.+++.. + .....++.|+.+
T Consensus 301 KERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~-a~~~~~V~R~~e 379 (664)
T PTZ00494 301 KDTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAA-AAEAFEVRREDE 379 (664)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccc-cccccccchhhH
Confidence 3457887776432 3335777766542 2233444555555544422 2 456678999988
Q ss_pred hHHHHHhhcc-CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 149 VEEIESLLGA-ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 149 ~~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
=.-+.+.|.. +...++++.+.|.-|.||++|++....+ .--..+|++
T Consensus 380 E~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD 427 (664)
T PTZ00494 380 EALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD 427 (664)
T ss_pred HHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE
Confidence 8778887765 3456899999999999999999887655 233456665
No 425
>PRK13808 adenylate kinase; Provisional
Probab=96.26 E-value=0.02 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|.|+||+||||+++.+...+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998875
No 426
>PLN02200 adenylate kinase family protein
Probab=96.26 E-value=0.004 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|.|++|+||||+|+.++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998875
No 427
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0036 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45899999999999999999999865
No 428
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.24 E-value=0.021 Score=48.17 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=34.1
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.+.++|..+-....++.|.|.+|+|||++|.+++.....+=..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555444344678999999999999999999877544444556664
No 429
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.24 E-value=0.0025 Score=55.75 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+.+.++|++|+|||++++.....+.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 4678999999999999999876543
No 430
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.24 E-value=0.0057 Score=58.58 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=38.0
Q ss_pred CCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 138 NKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
....++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456899999999988776532 33467899999999999999998754
No 431
>PRK07004 replicative DNA helicase; Provisional
Probab=96.23 E-value=0.074 Score=50.07 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=41.3
Q ss_pred cccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 143 VGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
.|...-...|.+++. +-.....+.|-|-||+|||++|..++.....+ -..++|+. . +-....+...++..
T Consensus 194 ~gi~TG~~~LD~~t~-G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fS----l---EM~~~ql~~R~la~ 264 (460)
T PRK07004 194 TGTPTGFVDLDRMTS-GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFS----M---EMPGTQLAMRMLGS 264 (460)
T ss_pred CCccCCcHHhccccc-CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEe----C---CCCHHHHHHHHHHh
Confidence 344444444444443 33345578888999999999999998875432 22333443 1 33445566666544
No 432
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.22 E-value=0.04 Score=44.95 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++.|.|.+|.||||||+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999988653
No 433
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.22 E-value=0.011 Score=54.65 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=48.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh----
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP---- 229 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~---- 229 (279)
....++|.|.+|.|||||+..+...... +..++.. +.++...+..+.+.++..-... .+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~~--~~~vi~~----iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTEA--DVVVVGL----IGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEE----EecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 3457999999999999999888765433 3333332 2221334555555544331111 11111
Q ss_pred ----hHHHHHHHh--CCCcEEEEEeCCCC
Q 047481 230 ----DIALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 230 ----~~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
..-.+.+++ +++.+||++||+..
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 112234444 57899999999944
No 434
>PRK15453 phosphoribulokinase; Provisional
Probab=96.21 E-value=0.0076 Score=52.59 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+|+|.|.+|.||||+|+.+...+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999876643
No 435
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.21 E-value=0.0072 Score=53.21 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=23.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+...+|||.|..|+||||||+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467999999999999999988876654
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.21 E-value=0.0048 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=21.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
...++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999887
No 437
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.009 Score=52.45 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=26.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
.+..++|||++|.|||-||+.++.....+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 466899999999999999999999876655
No 438
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.20 E-value=0.043 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-.+++|.|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999865
No 439
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0051 Score=52.50 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=35.9
Q ss_pred ccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 142 LVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
.=|.+-..+++.+.... +-+..+-|.++|++|.|||.||++++++-...|
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 44666666666655432 225577888999999999999999998855443
No 440
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.19 E-value=0.0037 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.2
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998874
No 441
>PHA02244 ATPase-like protein
Probab=96.18 E-value=0.0046 Score=55.97 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCccccchhhH----HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVE----EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~----~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++|....+. .+..++..+ ..|.|+|++|+|||+||+.++.....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34666555443 344444432 24678999999999999999998643
No 442
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.18 E-value=0.009 Score=53.87 Aligned_cols=58 Identities=28% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCCccccchhhHH---HHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceE
Q 047481 138 NKNPLVGVESRVEE---IESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSC 195 (279)
Q Consensus 138 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 195 (279)
....+||.....+. +.++...+.-.-+.|.+.|++|.|||+||..++..+....+-+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 35689998776554 45555544334678999999999999999999999887655433
No 443
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.17 E-value=0.0058 Score=58.47 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=27.5
Q ss_pred HhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 154 SLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 154 ~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
++|....+.+.+|+|.|.+|.||||||+.+...+
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3444344568899999999999999999998774
No 444
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.17 E-value=0.014 Score=55.59 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
-..||++|..|.|||||.+.+......
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 448999999999999999999877643
No 445
>PRK14532 adenylate kinase; Provisional
Probab=96.17 E-value=0.0037 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|.|++|+||||+|+.++.++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 446
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.014 Score=56.02 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCCccccchhhHHHH---HhhccCC-------CCeEEEEEeecccchHHHHHHHHHHHhhcCCCc---eEEEeeccccc
Q 047481 138 NKNPLVGVESRVEEIE---SLLGAES-------KDVYALGIWGIGGIGKTTIARAIFNNISSNFEG---SCFLQNVREES 204 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~---~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~ 204 (279)
.....-|.+...+++. +.|.... .-+.=+.++|+||.|||.||++++....-.|-. .-|+...-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV--- 224 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV--- 224 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc---
Confidence 3455677776555444 4444322 225567889999999999999999886544321 11221100
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh---------------H-HHHHHhhcCCCCCC
Q 047481 205 QRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF---------------K-QIKSLIRSHDWYMA 268 (279)
Q Consensus 205 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~-~~~~l~~~~~~~~~ 268 (279)
. -......+...+..++-++++++|.++.. + .+..++...+-|+.
T Consensus 225 --G-----------------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 225 --G-----------------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred --C-----------------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 0 11122223334455667899999988531 1 35666666666664
Q ss_pred CeEEEE
Q 047481 269 ESRIII 274 (279)
Q Consensus 269 gsrIii 274 (279)
+.-|||
T Consensus 286 ~~gviv 291 (596)
T COG0465 286 NEGVIV 291 (596)
T ss_pred CCceEE
Confidence 444444
No 447
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.16 E-value=0.049 Score=44.15 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=57.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC-CCce--EEEeecccccCCCCCHHHHHHHHHHHH---hcC-----CCch----
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN-FEGS--CFLQNVREESQRPGGLGCLQQKLLSKL---LQD-----HNVI---- 228 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~--~~~~~~~~~~~~~~~~~~l~~~ll~~l---~~~-----~~~~---- 228 (279)
..|-|++..|.||||+|..++-+...+ +.+. -|+... . ..+-..+...+.-.+ ... .+.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~----~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA----W-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC----c-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 578888889999999999999886544 4332 233211 0 112222222220000 000 1111
Q ss_pred ---hhHHHHHHHhC-CCcEEEEEeCCCC--------hHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 229 ---PDIALSFRRLS-SRKFLIVLDDVTC--------FKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 229 ---~~~~~l~~~l~-~k~~LlVlDdv~~--------~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
......++.+. +.-=|||||.+.. .+.+-.++..- .++..||+|-|+
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~ 139 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCC
Confidence 12334444454 4567999999932 23344444433 367899999886
No 448
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.031 Score=47.46 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=22.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|.|..|.|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998764
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.16 E-value=0.017 Score=54.68 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=35.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
.+.++|..+-..-+++.|.|.+|+||||||.+++.+-..+ =+.++|+.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3445565555567799999999999999999987764334 36677776
No 450
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.15 E-value=0.014 Score=54.08 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-+.++|.|..|.|||||++.+....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 45689999999999999998887654
No 451
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.15 E-value=0.0043 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|+|.|++|+||||+|+.+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 452
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.016 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
-|=-.++|+||.|||++..++++.+.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC
Confidence 34567899999999999999998863
No 453
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.15 E-value=0.0063 Score=48.56 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC-CCceEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN-FEGSCF 196 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~ 196 (279)
+++|+|+.|+|||||+..+...+..+ +...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 47899999999999999999987655 444433
No 454
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.15 E-value=0.0031 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+.|+|++|+|||||++.++...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78899999999999999997764
No 455
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.14 E-value=0.039 Score=51.85 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=54.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCC-CceEEEeecccccCCCCCHHHHHHHHHHHHh-------c-C-------C
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNF-EGSCFLQNVREESQRPGGLGCLQQKLLSKLL-------Q-D-------H 225 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-------~-~-------~ 225 (279)
.-+-++|.|.+|+|||||+..+...+.... +.++|.. +++ +......+...++..-. . . .
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~l-IGE---RgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~ats 235 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE---RTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 235 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEE-ecc---CchHHHHHHHHHHhcCccccCcccccceEEEEECC
Confidence 356899999999999999999888744322 4444543 333 24556667666665110 0 0 1
Q ss_pred Cch--------hhHHHHHHHhC--C-CcEEEEEeCCCCh
Q 047481 226 NVI--------PDIALSFRRLS--S-RKFLIVLDDVTCF 253 (279)
Q Consensus 226 ~~~--------~~~~~l~~~l~--~-k~~LlVlDdv~~~ 253 (279)
+.. ...-.+.++++ + +.+||++||+-..
T Consensus 236 d~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 236 NEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 111 11234666774 3 4999999999543
No 456
>PRK05748 replicative DNA helicase; Provisional
Probab=96.14 E-value=0.075 Score=49.86 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=43.0
Q ss_pred cccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC-CceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 143 VGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF-EGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
.|...-+..|..++. +-..-.++.|-|.||+|||++|..++.....+. ..++|+. . +-....+...++..
T Consensus 184 ~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS-l------Ems~~~l~~R~l~~ 254 (448)
T PRK05748 184 TGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS-L------EMGAESLVMRMLCA 254 (448)
T ss_pred CCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe-C------CCCHHHHHHHHHHH
Confidence 444445555555543 333455888899999999999999998865332 2344443 1 33445566665543
No 457
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.13 E-value=0.0057 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.8
Q ss_pred EeecccchHHHHHHHHHHHhhcC
Q 047481 168 IWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 168 I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
|+||+|+||||+++.+.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 67999999999999999987655
No 458
>PRK13764 ATPase; Provisional
Probab=96.13 E-value=0.02 Score=55.35 Aligned_cols=85 Identities=20% Similarity=0.159 Sum_probs=52.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKF 243 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 243 (279)
..|.|+|++|+||||+++.++..+..+-..+..+.+..+..- ..... ++ ..+ ..+. .......|+.++=
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~-~~~i~----q~-~~~--~~~~---~~~~~~lLR~rPD 326 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQV-PPEIT----QY-SKL--EGSM---EETADILLLVRPD 326 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccC-CCcce----EE-eec--cccH---HHHHHHHHhhCCC
Confidence 458899999999999999999887654333445654444322 11100 00 000 0111 1222334788899
Q ss_pred EEEEeCCCChHHHHHH
Q 047481 244 LIVLDDVTCFKQIKSL 259 (279)
Q Consensus 244 LlVlDdv~~~~~~~~l 259 (279)
.+++|++.+.+.++.+
T Consensus 327 ~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 327 YTIYDEMRKTEDFKIF 342 (602)
T ss_pred EEEECCCCCHHHHHHH
Confidence 9999999998887765
No 459
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0042 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.+-|.|.|-||+||||||.+++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 346889999999999999999976
No 460
>PRK13768 GTPase; Provisional
Probab=96.12 E-value=0.0084 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.++.|.|+||+||||++..+...+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 478899999999999999998876543
No 461
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.011 Score=52.82 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=27.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
.+++.+.|.||+||||+|.+.+-...........+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 46888999999999999999888766655443333
No 462
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.12 E-value=0.0098 Score=45.48 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=32.6
Q ss_pred ccccchhh----HHHHHhhcc-CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 142 LVGVESRV----EEIESLLGA-ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 142 ~vGr~~~~----~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
++|..--. +.|...+.. ..+..-|++.+|.+|+|||-+++.+++.+.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 45554333 334444433 234578999999999999999999998853
No 463
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.11 E-value=0.0074 Score=54.22 Aligned_cols=49 Identities=31% Similarity=0.293 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCc
Q 047481 141 PLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEG 193 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~ 193 (279)
.++|.+..+..+...+..+. .+.+.|++|+|||+||+.++..+...|-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 47888887777766655433 57788999999999999999998755443
No 464
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.11 E-value=0.014 Score=51.81 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.2
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....+|+|.|.+|+|||||+..+...+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998886543
No 465
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.11 E-value=0.0069 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.++|++|+|||+||+.++..+...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 568899999999999999999876443
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0051 Score=52.13 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--++||+|.+|+|||||++.++--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 448999999999999999999754
No 467
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.085 Score=47.28 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+.+...+..+ .-.....++|+.|+||+++|+.++..+.
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 3444444422 2245788999999999999999998864
No 468
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.10 E-value=0.0084 Score=58.37 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQ 215 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 215 (279)
.....++|.+..++.|...+..+ +.+.++|.+|+||||||+.++..+... ++...|+.|. ......+.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np------~~~~~~~~~ 97 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP------EDPNNPKIR 97 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC------CcchHHHHH
Confidence 44466889988888888776643 368899999999999999999886543 5677777652 334445555
Q ss_pred HHHHH
Q 047481 216 KLLSK 220 (279)
Q Consensus 216 ~ll~~ 220 (279)
.++..
T Consensus 98 ~v~~~ 102 (637)
T PRK13765 98 TVPAG 102 (637)
T ss_pred HHHHh
Confidence 55443
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.09 E-value=0.0048 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEeecccchHHHHHHHHHHHh
Q 047481 166 LGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
|.|+|.+|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6789999999999999998753
No 470
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.08 E-value=0.035 Score=51.74 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
....++|+|..|.|||||++.+..... .+..++.. +..+......+...++..-... .+....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~--~dv~V~g~----Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE--ADIIVVGL----IGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEE----eCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 345799999999999999988876432 23333322 2222344555555554432111 111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+||++||+-..
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 12244555 579999999999543
No 471
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.08 E-value=0.013 Score=52.32 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
++=.......+..+|..+ +.|.|.|++|+||||||+.++..+...|
T Consensus 47 y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred ccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 333334445566666432 3588999999999999999999976544
No 472
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0092 Score=53.89 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCCCCccccchhhHHHHHhhccC----------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE----------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..=..+.|.+...+-|.+..-.. ...=+-|..+|+||.|||-||++|+.....
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 33345677766665555543211 123456788999999999999999987543
No 473
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.06 E-value=0.031 Score=50.70 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=29.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHh--hcCCCceEEEe
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI--SSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~--~~~f~~~~~~~ 198 (279)
.++.|.|.||.|||.||-.++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478899999999999999999998 56666677775
No 474
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.06 E-value=0.013 Score=52.42 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=42.1
Q ss_pred CCCCCccccchhhHH---HHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEE---IESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+.|||.....+. +.++...+.-.-+.|.|+|++|.|||.||-.+++.+...
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456789998765544 556666554457789999999999999999999998765
No 475
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.06 E-value=0.031 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+++.|.|.+|.||||+++.+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 477899999999999999998776554
No 476
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.085 Score=52.95 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=62.7
Q ss_pred CccccchhhHHHHHhhcc---CC---CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHH
Q 047481 141 PLVGVESRVEEIESLLGA---ES---KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQ 214 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~---~~---~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 214 (279)
..+|.+..+..|.+.+.. +. .+.-...+.|+.|+|||.||++++..+....+.-+-++ +...+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~~ 631 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEFQ 631 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhhh
Confidence 456777777777776543 11 13557778999999999999999999866665555554 22222
Q ss_pred HHHHHHHhcCCC---chhhHHHHHHHhCCCc-EEEEEeCCCChH
Q 047481 215 QKLLSKLLQDHN---VIPDIALSFRRLSSRK-FLIVLDDVTCFK 254 (279)
Q Consensus 215 ~~ll~~l~~~~~---~~~~~~~l~~~l~~k~-~LlVlDdv~~~~ 254 (279)
+ ..++.+... -......+.+.++.++ .+|+||||+..+
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 2 222222211 1122346777787776 566699998643
No 477
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.04 E-value=0.0064 Score=60.76 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCccccchhhHHHHHhhcc----CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 140 NPLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
...+|.+.-.++|.++|.. ......++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3578999888889887763 123456899999999999999999998865543
No 478
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=96.03 E-value=0.044 Score=51.43 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=50.7
Q ss_pred eEEEEEeecccchHHHHHHH-HHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 163 VYALGIWGIGGIGKTTIARA-IFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~-v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
-+-++|.|..|+|||+||.. +.++ ..-+..|.+..+++ +......+.+.+...-... .+....
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q--~~~dv~cV~~~IGe---r~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ--KGQNVICVYVAIGQ---KASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc--ccCCeEEEEEEecC---CchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 45789999999999999654 4444 23455544444433 2455666666665432211 111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+|||+||+...
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 12234444 478999999999543
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.03 E-value=0.033 Score=53.14 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=38.8
Q ss_pred chhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 146 ESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
..-+..|.++|..+-..-.++.|.|.+|+|||+||.+++.....+ -+.++|+.
T Consensus 14 ~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 14 PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 344455666676555557799999999999999999998775555 44566665
No 480
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.03 E-value=0.013 Score=54.39 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=48.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
.-..++|.|..|.|||||++.+..... .+..++.. ..++...+..+..+.+..-... .+....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~--~d~~vi~~----iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD--ADSNVLVL----IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC--CCEEEEEE----ECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 355899999999999999998877543 23333332 1111333444444443211001 111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+||++||+...
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 12244455 478999999999543
No 481
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.02 E-value=0.0053 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+|.+.|++|+||||+|+.+..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 467889999999999999998875
No 482
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.02 E-value=0.015 Score=56.49 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+-..++|+|..|.|||||++.+...+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34589999999999999999997653
No 483
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.02 E-value=0.0093 Score=48.86 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.2
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+|.|.|+.|+||||+++.++..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999987543
No 484
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.02 E-value=0.0092 Score=47.78 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
.++++|+|+.++|||||..++...+..+-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 35899999999999999999999877654
No 485
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.092 Score=47.11 Aligned_cols=26 Identities=35% Similarity=0.286 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+.++|+.|+||||+|+.++..+.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 55788999999999999999999864
No 486
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=96.01 E-value=0.034 Score=52.34 Aligned_cols=86 Identities=26% Similarity=0.216 Sum_probs=52.3
Q ss_pred CeEEEEEeecccchHHHHH-HHHHHHhhcCCCc-eEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh--
Q 047481 162 DVYALGIWGIGGIGKTTIA-RAIFNNISSNFEG-SCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP-- 229 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA-~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~-- 229 (279)
.-+-++|.|..|+|||||| ..+.++. .-+. ++|+. + .++......+.+.+...-... .+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~-I---GeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~ 234 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCA-I---GQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGL 234 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEE-e---ccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHH
Confidence 3568899999999999997 4677764 3454 34443 3 332455666666666542221 11111
Q ss_pred ------hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ------DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ------~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
....+.+++ +++.+|||+||+...
T Consensus 235 r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 235 QYIAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 122345555 578999999999543
No 487
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.01 E-value=0.013 Score=54.31 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=48.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchh-----
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIP----- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~----- 229 (279)
-..++|.|..|+|||||++.+...... +..++.. ..++...+..+.+..+..-... .+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~--~~gvi~~----iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA--DVVVIAL----VGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEE----EeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 458999999999999999888766433 2222222 1111334455555444332111 11111
Q ss_pred ---hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ---DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ---~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+-..
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112345555 578999999999543
No 488
>PRK13409 putative ATPase RIL; Provisional
Probab=96.00 E-value=0.028 Score=54.59 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|+|||||++.++...
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4489999999999999999998754
No 489
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.028 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.-|+|+|+.|+||+||.+.+.-.+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC
Confidence 4578999999999999999987654
No 490
>PLN02348 phosphoribulokinase
Probab=95.99 E-value=0.0098 Score=54.25 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+...+|||.|.+|.||||||+.+...+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355789999999999999999999998754
No 491
>PRK10436 hypothetical protein; Provisional
Probab=95.99 E-value=0.018 Score=54.01 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=59.7
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCch
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVI 228 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 228 (279)
++.+..++.. ....|.|.|+.|.||||....+...+...-...+-+.+.-+... .++..+ ++. .....
T Consensus 207 ~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l--~gi~Q~------~v~-~~~g~ 274 (462)
T PRK10436 207 LAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL--AGINQT------QIH-PKAGL 274 (462)
T ss_pred HHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC--CCcceE------eeC-CccCc
Confidence 3344444432 34589999999999999888777776443333333432222111 111000 000 01112
Q ss_pred hhHHHHHHHhCCCcEEEEEeCCCChHHHHHHhh
Q 047481 229 PDIALSFRRLSSRKFLIVLDDVTCFKQIKSLIR 261 (279)
Q Consensus 229 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~ 261 (279)
.....++..|+..+=.|++.++.+.+.....+.
T Consensus 275 ~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~ 307 (462)
T PRK10436 275 TFQRVLRALLRQDPDVIMVGEIRDGETAEIAIK 307 (462)
T ss_pred CHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence 356778889999999999999998887665443
No 492
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.98 E-value=0.008 Score=57.19 Aligned_cols=54 Identities=30% Similarity=0.374 Sum_probs=39.4
Q ss_pred ccccchhhHHHHHhhcc---CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 142 LVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
+.--...++++..||.. +....+++.+.|++|+||||.++.+++.+. |+..-|.
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 33345677888888864 233456899999999999999999999853 4444454
No 493
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.98 E-value=0.0044 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.108 Sum_probs=20.4
Q ss_pred EEEEEeecccchHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.+++|.|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 494
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.097 Score=45.10 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 141 PLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..=|.+..++++.+.+-.. -....-+..+|+||.|||-+|++.+.+-..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 4567788888887764221 123556788999999999999998876433
No 495
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.97 E-value=0.015 Score=56.43 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=26.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
+-..++|+|..|.|||||++.+...+ . .++.+.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i 408 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKI 408 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEE
Confidence 45689999999999999999998766 3 3455544
No 496
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0071 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999886
No 497
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.97 E-value=0.011 Score=47.28 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 479999999999999999999987654
No 498
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.014 Score=47.27 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=51.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe--ecccccCC--CCCHHHHHHHH------HHHHhcC------
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ--NVREESQR--PGGLGCLQQKL------LSKLLQD------ 224 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--~~~~~~~~--~~~~~~l~~~l------l~~l~~~------ 224 (279)
+...+|=+.|.+|.||||||.+++..+.........++ +++..... .++-..=.+.+ ++.+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 34567888899999999999999999877655444442 22211110 12211111111 1111111
Q ss_pred ---CCchhhHHHHHHHhCCCcEEEEEeCC
Q 047481 225 ---HNVIPDIALSFRRLSSRKFLIVLDDV 250 (279)
Q Consensus 225 ---~~~~~~~~~l~~~l~~k~~LlVlDdv 250 (279)
....+.....++.+...+++=|.=|.
T Consensus 101 a~ISP~r~~R~~aR~~~~~~~FiEVyV~~ 129 (197)
T COG0529 101 AFISPYREDRQMARELLGEGEFIEVYVDT 129 (197)
T ss_pred EeeCccHHHHHHHHHHhCcCceEEEEeCC
Confidence 33344556677778877888887666
No 499
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.015 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-.+++++|++|.||||+|..+-+-
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3459999999999999999887664
No 500
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.05 Score=44.56 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHhCCCcEEEEEeCCCC---h---HHHHHHhhcCCCCCCCeEEEEEec
Q 047481 232 ALSFRRLSSRKFLIVLDDVTC---F---KQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 232 ~~l~~~l~~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
..+.+..-.++-|.|||+... . ..+..++.... ..|.-||.||.
T Consensus 139 vAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~--~~GGiVllttH 188 (209)
T COG4133 139 VALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA--AQGGIVLLTTH 188 (209)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh--cCCCEEEEecC
Confidence 445666678899999999842 2 23555554432 56888888885
Done!