Query 047481
Match_columns 279
No_of_seqs 239 out of 2500
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.5E-33 5.2E-38 230.3 4.7 127 6-132 25-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.7E-32 5.7E-37 220.6 4.3 123 11-135 3-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 99.9 1.2E-22 4.1E-27 192.7 13.4 126 143-279 131-275 (549)
4 3sfz_A APAF-1, apoptotic pepti 99.8 1.1E-20 3.9E-25 193.2 12.3 134 137-279 121-267 (1249)
5 1vt4_I APAF-1 related killer D 99.8 1.2E-19 4.1E-24 179.0 12.4 128 140-279 128-275 (1221)
6 1z6t_A APAF-1, apoptotic prote 99.8 2.6E-19 8.8E-24 170.9 9.8 130 137-279 121-267 (591)
7 3h16_A TIR protein; bacteria T 99.6 4.9E-17 1.7E-21 129.0 2.3 63 11-74 15-78 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.4 6.6E-15 2.2E-19 115.4 -3.8 63 10-74 4-69 (146)
9 1w5s_A Origin recognition comp 99.3 9.8E-12 3.4E-16 112.8 11.3 112 137-253 19-150 (412)
10 2qby_B CDC6 homolog 3, cell di 99.3 2.7E-11 9.3E-16 108.9 11.7 131 139-278 19-173 (384)
11 2v1u_A Cell division control p 99.2 6.6E-11 2.3E-15 106.1 12.4 137 137-278 16-176 (387)
12 1fyx_A TOLL-like receptor 2; b 99.2 2.1E-12 7.2E-17 101.5 1.3 60 13-74 2-65 (149)
13 2j67_A TOLL like receptor 10; 99.2 4.6E-12 1.6E-16 102.4 1.7 62 11-74 30-95 (178)
14 2qen_A Walker-type ATPase; unk 99.2 2.6E-11 8.9E-16 107.3 6.6 131 137-278 9-173 (350)
15 2js7_A Myeloid differentiation 99.2 3.5E-12 1.2E-16 101.4 0.2 62 11-74 11-76 (160)
16 2fna_A Conserved hypothetical 99.2 8.1E-11 2.8E-15 104.3 9.1 53 137-198 10-62 (357)
17 1fnn_A CDC6P, cell division co 99.1 5E-10 1.7E-14 100.6 13.7 137 137-278 14-168 (389)
18 2qby_A CDC6 homolog 1, cell di 99.1 6.7E-11 2.3E-15 105.9 7.8 137 137-278 17-172 (386)
19 1t3g_A X-linked interleukin-1 99.1 8.1E-12 2.8E-16 99.2 0.4 60 15-74 1-72 (159)
20 2chg_A Replication factor C sm 99.1 7E-10 2.4E-14 91.3 10.1 125 137-278 14-141 (226)
21 1njg_A DNA polymerase III subu 99.0 5.7E-09 1.9E-13 86.8 11.7 131 137-278 20-165 (250)
22 3te6_A Regulatory protein SIR3 98.8 7.5E-09 2.6E-13 91.0 8.8 107 142-253 22-144 (318)
23 1sxj_B Activator 1 37 kDa subu 98.8 7.6E-09 2.6E-13 90.5 7.7 124 137-278 18-146 (323)
24 1jbk_A CLPB protein; beta barr 98.8 2E-08 6.9E-13 80.4 8.8 51 137-189 19-69 (195)
25 1iqp_A RFCS; clamp loader, ext 98.7 2E-08 6.8E-13 87.9 7.8 124 137-278 22-149 (327)
26 2p65_A Hypothetical protein PF 98.7 1E-07 3.5E-12 76.1 10.7 51 137-189 19-69 (187)
27 3h4m_A Proteasome-activating n 98.6 2.7E-08 9.4E-13 85.7 4.6 53 137-189 14-77 (285)
28 2chq_A Replication factor C sm 98.6 2.7E-07 9.3E-12 80.3 10.0 124 137-278 14-141 (319)
29 3d8b_A Fidgetin-like protein 1 98.5 4.9E-07 1.7E-11 80.8 11.3 70 115-188 63-142 (357)
30 3syl_A Protein CBBX; photosynt 98.5 5E-07 1.7E-11 78.6 9.4 49 141-189 32-93 (309)
31 3ec2_A DNA replication protein 98.5 4.5E-07 1.5E-11 72.7 8.3 96 163-277 38-141 (180)
32 1jr3_A DNA polymerase III subu 98.4 9.3E-07 3.2E-11 78.8 10.6 52 137-189 13-64 (373)
33 3n70_A Transport activator; si 98.4 3.8E-07 1.3E-11 70.7 7.0 48 141-188 2-49 (145)
34 1sxj_E Activator 1 40 kDa subu 98.4 1.3E-06 4.3E-11 77.5 10.4 50 137-188 11-61 (354)
35 1sxj_D Activator 1 41 kDa subu 98.4 9.3E-07 3.2E-11 78.1 9.3 50 137-188 34-83 (353)
36 2w58_A DNAI, primosome compone 98.4 7.9E-07 2.7E-11 72.5 8.0 61 138-198 23-89 (202)
37 2z4s_A Chromosomal replication 98.4 7.6E-07 2.6E-11 81.8 8.7 122 140-278 105-236 (440)
38 3u61_B DNA polymerase accessor 98.4 8.7E-07 3E-11 77.7 8.5 119 137-277 23-144 (324)
39 3eie_A Vacuolar protein sortin 98.4 5.2E-07 1.8E-11 79.4 7.0 53 137-189 15-77 (322)
40 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.8E-07 1.6E-11 76.7 6.5 52 138-189 4-65 (262)
41 1d2n_A N-ethylmaleimide-sensit 98.4 4.9E-06 1.7E-10 71.1 12.7 50 139-188 32-89 (272)
42 3b9p_A CG5977-PA, isoform A; A 98.4 8.1E-07 2.8E-11 76.9 7.8 67 122-188 3-79 (297)
43 3bos_A Putative DNA replicatio 98.3 1.1E-07 3.7E-12 79.3 1.8 59 138-198 26-87 (242)
44 2qp9_X Vacuolar protein sortin 98.3 7.3E-07 2.5E-11 79.6 7.3 52 137-188 48-109 (355)
45 1sxj_A Activator 1 95 kDa subu 98.3 1.1E-06 3.8E-11 82.3 8.4 51 137-187 36-101 (516)
46 1hqc_A RUVB; extended AAA-ATPa 98.3 1.2E-06 4.2E-11 76.5 8.0 52 137-188 9-63 (324)
47 2zan_A Vacuolar protein sortin 98.3 2.1E-06 7.1E-11 79.0 9.2 51 137-187 131-191 (444)
48 1l8q_A Chromosomal replication 98.3 2.5E-06 8.5E-11 74.9 9.1 123 139-278 10-140 (324)
49 3cf0_A Transitional endoplasmi 98.3 4.6E-06 1.6E-10 72.6 10.2 96 138-252 13-119 (301)
50 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.9E-06 1.3E-10 73.9 9.6 50 138-187 10-69 (322)
51 3uk6_A RUVB-like 2; hexameric 98.2 9.1E-06 3.1E-10 72.3 11.8 52 139-190 43-97 (368)
52 2r62_A Cell division protease 98.2 5.6E-07 1.9E-11 76.8 3.6 54 137-190 8-71 (268)
53 3vfd_A Spastin; ATPase, microt 98.2 3E-06 1E-10 76.4 8.4 52 137-188 112-173 (389)
54 3pvs_A Replication-associated 98.2 2.5E-06 8.5E-11 78.5 7.8 104 137-264 23-131 (447)
55 1qvr_A CLPB protein; coiled co 98.1 6.8E-06 2.3E-10 81.6 9.3 51 137-189 167-217 (854)
56 3pxg_A Negative regulator of g 98.1 1.2E-05 4.1E-10 74.4 10.4 51 137-189 177-227 (468)
57 3co5_A Putative two-component 98.1 1E-06 3.4E-11 68.2 2.6 47 141-187 5-51 (143)
58 3j0a_A TOLL-like receptor 5; m 98.1 1.1E-06 3.8E-11 87.0 3.0 61 12-74 666-733 (844)
59 3pfi_A Holliday junction ATP-d 98.1 5.1E-06 1.8E-10 73.2 6.7 54 137-190 26-82 (338)
60 1lv7_A FTSH; alpha/beta domain 98.1 1.1E-05 3.9E-10 68.2 8.6 53 137-189 9-71 (257)
61 1r6b_X CLPA protein; AAA+, N-t 98.1 1.5E-05 5.2E-10 78.0 10.7 50 137-188 183-232 (758)
62 4fcw_A Chaperone protein CLPB; 98.1 6.3E-06 2.2E-10 71.5 6.8 50 141-190 18-74 (311)
63 3t15_A Ribulose bisphosphate c 98.0 2.4E-05 8.1E-10 67.8 9.0 28 163-190 36-63 (293)
64 4b4t_J 26S protease regulatory 97.9 4.5E-05 1.5E-09 68.8 10.2 51 140-190 148-209 (405)
65 2kjq_A DNAA-related protein; s 97.9 6.5E-06 2.2E-10 64.2 3.9 37 162-198 35-71 (149)
66 1sxj_C Activator 1 40 kDa subu 97.9 3.3E-05 1.1E-09 68.2 8.9 49 139-189 24-72 (340)
67 3pxi_A Negative regulator of g 97.9 3.9E-05 1.3E-09 75.1 10.2 51 137-189 177-227 (758)
68 3hu3_A Transitional endoplasmi 97.9 4.3E-05 1.5E-09 71.0 9.4 48 140-187 204-262 (489)
69 1ojl_A Transcriptional regulat 97.9 1E-05 3.5E-10 70.6 4.9 49 140-188 2-50 (304)
70 2gno_A DNA polymerase III, gam 97.9 0.00012 4.2E-09 63.7 11.7 116 144-278 1-121 (305)
71 2ce7_A Cell division protein F 97.8 8.4E-05 2.9E-09 68.7 10.5 51 139-189 15-75 (476)
72 2cvh_A DNA repair and recombin 97.8 4.4E-05 1.5E-09 62.5 7.8 45 151-198 8-52 (220)
73 4b4t_L 26S protease subunit RP 97.8 0.00012 4E-09 66.9 9.9 51 140-190 181-242 (437)
74 1a5t_A Delta prime, HOLB; zinc 97.7 0.00041 1.4E-08 61.1 12.2 42 147-189 9-50 (334)
75 2w0m_A SSO2452; RECA, SSPF, un 97.7 8.6E-05 2.9E-09 61.2 7.2 48 151-198 11-58 (235)
76 4b4t_H 26S protease regulatory 97.7 3.7E-05 1.3E-09 70.4 5.3 51 140-190 209-270 (467)
77 2qgz_A Helicase loader, putati 97.7 9.6E-05 3.3E-09 64.5 7.7 50 149-198 137-188 (308)
78 2c9o_A RUVB-like 1; hexameric 97.6 0.00012 4.2E-09 67.3 8.3 52 139-190 36-90 (456)
79 4b4t_M 26S protease regulatory 97.6 0.00014 4.9E-09 66.3 8.3 51 140-190 181-242 (434)
80 3hr8_A Protein RECA; alpha and 97.6 0.00079 2.7E-08 59.9 12.8 97 145-251 42-149 (356)
81 4b4t_K 26S protease regulatory 97.6 3.7E-05 1.3E-09 70.1 3.9 51 140-190 172-233 (428)
82 1ypw_A Transitional endoplasmi 97.6 0.00019 6.6E-09 70.6 8.9 51 139-189 203-264 (806)
83 4a74_A DNA repair and recombin 97.5 0.00035 1.2E-08 57.5 9.0 38 151-188 13-50 (231)
84 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0003 1E-08 65.4 9.2 52 137-188 28-89 (499)
85 2vhj_A Ntpase P4, P4; non- hyd 97.5 9.7E-05 3.3E-09 64.6 5.3 71 163-252 123-193 (331)
86 4b4t_I 26S protease regulatory 97.5 0.00027 9.2E-09 64.1 8.4 51 140-190 182-243 (437)
87 3pxi_A Negative regulator of g 97.5 0.00028 9.6E-09 69.0 9.2 58 140-197 491-555 (758)
88 3cf2_A TER ATPase, transitiona 97.5 4.3E-05 1.5E-09 74.8 2.8 50 140-189 204-264 (806)
89 3bh0_A DNAB-like replicative h 97.5 0.001 3.5E-08 58.1 11.3 53 145-198 51-103 (315)
90 3lw7_A Adenylate kinase relate 97.4 0.00043 1.5E-08 54.1 7.4 22 164-186 2-23 (179)
91 2zr9_A Protein RECA, recombina 97.4 0.0019 6.6E-08 57.2 12.4 97 144-250 41-148 (349)
92 3jvv_A Twitching mobility prot 97.4 7E-05 2.4E-09 66.7 2.9 106 164-278 124-230 (356)
93 2bjv_A PSP operon transcriptio 97.4 0.00014 4.8E-09 61.7 4.5 49 140-188 6-54 (265)
94 1vma_A Cell division protein F 97.4 0.0069 2.4E-07 52.6 15.4 29 162-190 103-131 (306)
95 1iy2_A ATP-dependent metallopr 97.4 0.00045 1.5E-08 59.0 7.7 52 137-188 37-98 (278)
96 3io5_A Recombination and repai 97.4 0.0011 3.9E-08 57.7 10.1 91 150-251 12-121 (333)
97 1ofh_A ATP-dependent HSL prote 97.3 8.6E-05 2.9E-09 64.1 3.0 48 141-188 16-75 (310)
98 1g5t_A COB(I)alamin adenosyltr 97.3 0.00075 2.6E-08 54.7 8.4 110 164-278 29-162 (196)
99 2b8t_A Thymidine kinase; deoxy 97.3 0.00016 5.6E-09 60.0 4.5 104 163-277 12-124 (223)
100 1qvr_A CLPB protein; coiled co 97.3 0.00034 1.2E-08 69.4 7.4 49 141-189 559-614 (854)
101 2ehv_A Hypothetical protein PH 97.3 0.00038 1.3E-08 58.0 6.7 36 163-198 30-66 (251)
102 1in4_A RUVB, holliday junction 97.3 0.00011 3.8E-09 64.8 3.3 50 140-189 25-77 (334)
103 3dm5_A SRP54, signal recogniti 97.3 0.011 3.9E-07 53.8 16.3 29 162-190 99-127 (443)
104 3m6a_A ATP-dependent protease 97.3 0.00029 1E-08 66.3 5.8 48 142-189 83-134 (543)
105 4a1f_A DNAB helicase, replicat 97.3 0.0018 6E-08 57.2 10.4 71 142-220 26-96 (338)
106 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00095 3.3E-08 65.2 9.5 48 140-187 458-512 (758)
107 1xp8_A RECA protein, recombina 97.2 0.0048 1.6E-07 55.0 13.1 98 143-250 53-161 (366)
108 1u94_A RECA protein, recombina 97.2 0.0027 9.2E-08 56.4 11.4 56 143-198 42-98 (356)
109 2eyu_A Twitching motility prot 97.2 7.1E-05 2.4E-09 63.8 1.0 107 162-278 24-132 (261)
110 1n0w_A DNA repair protein RAD5 97.2 0.00079 2.7E-08 55.8 7.4 49 150-198 11-65 (243)
111 1v5w_A DMC1, meiotic recombina 97.2 0.0019 6.5E-08 57.1 10.2 49 150-198 109-163 (343)
112 3hws_A ATP-dependent CLP prote 97.2 0.00027 9.4E-09 62.8 4.3 47 142-188 17-76 (363)
113 3c8u_A Fructokinase; YP_612366 97.1 0.00047 1.6E-08 56.3 5.2 29 161-189 20-48 (208)
114 1qhx_A CPT, protein (chloramph 97.1 0.00018 6.2E-09 56.9 2.6 25 164-188 4-28 (178)
115 2x8a_A Nuclear valosin-contain 97.1 0.00097 3.3E-08 57.0 7.4 24 166-189 47-70 (274)
116 2r44_A Uncharacterized protein 97.1 0.00022 7.4E-09 62.5 3.2 46 140-189 27-72 (331)
117 2r6a_A DNAB helicase, replicat 97.1 0.0033 1.1E-07 57.6 11.2 54 144-198 185-239 (454)
118 3e70_C DPA, signal recognition 97.1 0.0062 2.1E-07 53.4 12.4 30 161-190 127-156 (328)
119 3sr0_A Adenylate kinase; phosp 97.1 0.00095 3.2E-08 54.7 6.3 88 165-259 2-93 (206)
120 3kb2_A SPBC2 prophage-derived 97.1 0.0003 1E-08 55.1 3.1 24 165-188 3-26 (173)
121 1rz3_A Hypothetical protein rb 97.1 0.00089 3.1E-08 54.3 6.1 44 146-189 4-48 (201)
122 2z43_A DNA repair and recombin 97.0 0.0024 8.1E-08 55.9 8.9 96 150-251 94-213 (324)
123 1sky_E F1-ATPase, F1-ATP synth 97.0 0.0014 4.8E-08 60.2 7.6 33 165-197 153-186 (473)
124 3umf_A Adenylate kinase; rossm 97.0 0.0041 1.4E-07 51.3 9.5 27 161-187 27-53 (217)
125 3trf_A Shikimate kinase, SK; a 97.0 0.00036 1.2E-08 55.6 2.9 25 164-188 6-30 (185)
126 3vaa_A Shikimate kinase, SK; s 97.0 0.00041 1.4E-08 56.2 3.2 26 163-188 25-50 (199)
127 2xxa_A Signal recognition part 97.0 0.031 1.1E-06 50.9 16.0 29 162-190 99-127 (433)
128 1nks_A Adenylate kinase; therm 96.9 0.00089 3E-08 53.3 5.1 26 164-189 2-27 (194)
129 1ixz_A ATP-dependent metallopr 96.9 0.00047 1.6E-08 57.9 3.5 51 138-188 14-74 (254)
130 1nlf_A Regulatory protein REPA 96.9 0.004 1.4E-07 53.1 9.4 27 163-189 30-56 (279)
131 1odf_A YGR205W, hypothetical 3 96.9 0.00093 3.2E-08 57.7 5.4 30 160-189 28-57 (290)
132 1zu4_A FTSY; GTPase, signal re 96.9 0.0067 2.3E-07 53.0 10.8 29 162-190 104-132 (320)
133 1zuh_A Shikimate kinase; alpha 96.9 0.00048 1.6E-08 54.0 3.0 26 163-188 7-32 (168)
134 3uie_A Adenylyl-sulfate kinase 96.9 0.0011 3.7E-08 53.7 5.2 27 162-188 24-50 (200)
135 1ly1_A Polynucleotide kinase; 96.9 0.00059 2E-08 53.8 3.3 22 164-185 3-24 (181)
136 2rhm_A Putative kinase; P-loop 96.8 0.00085 2.9E-08 53.6 4.1 25 163-187 5-29 (193)
137 2q6t_A DNAB replication FORK h 96.8 0.0049 1.7E-07 56.4 9.6 55 143-198 181-236 (444)
138 1zp6_A Hypothetical protein AT 96.8 0.00068 2.3E-08 54.2 3.3 24 163-186 9-32 (191)
139 2i1q_A DNA repair and recombin 96.8 0.0041 1.4E-07 54.2 8.5 38 150-187 85-122 (322)
140 1kag_A SKI, shikimate kinase I 96.8 0.00054 1.9E-08 53.8 2.6 25 164-188 5-29 (173)
141 3kl4_A SRP54, signal recogniti 96.8 0.0041 1.4E-07 56.6 8.7 29 162-190 96-124 (433)
142 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00072 2.5E-08 59.9 3.5 46 146-191 5-52 (359)
143 3lda_A DNA repair protein RAD5 96.8 0.0068 2.3E-07 54.7 9.9 50 149-198 164-219 (400)
144 1kht_A Adenylate kinase; phosp 96.8 0.00076 2.6E-08 53.7 3.3 26 164-189 4-29 (192)
145 1um8_A ATP-dependent CLP prote 96.8 0.00091 3.1E-08 59.7 4.0 26 163-188 72-97 (376)
146 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0032 1.1E-07 55.3 7.3 101 165-277 173-273 (330)
147 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.9E-08 55.5 4.2 27 161-187 27-53 (243)
148 2ewv_A Twitching motility prot 96.7 0.0062 2.1E-07 54.4 9.3 107 162-277 135-242 (372)
149 1j8m_F SRP54, signal recogniti 96.7 0.011 3.8E-07 51.1 10.6 28 163-190 98-125 (297)
150 3ice_A Transcription terminati 96.7 0.00062 2.1E-08 61.0 2.6 28 163-190 174-201 (422)
151 3iij_A Coilin-interacting nucl 96.7 0.00051 1.7E-08 54.5 1.9 25 163-187 11-35 (180)
152 2yvu_A Probable adenylyl-sulfa 96.7 0.0016 5.4E-08 51.9 4.9 28 162-189 12-39 (186)
153 1knq_A Gluconate kinase; ALFA/ 96.7 0.0012 4.1E-08 52.0 4.1 25 163-187 8-32 (175)
154 3t61_A Gluconokinase; PSI-biol 96.7 0.0007 2.4E-08 54.8 2.7 25 163-187 18-42 (202)
155 1via_A Shikimate kinase; struc 96.7 0.0007 2.4E-08 53.5 2.6 24 165-188 6-29 (175)
156 2iyv_A Shikimate kinase, SK; t 96.7 0.00061 2.1E-08 54.2 2.2 24 165-188 4-27 (184)
157 1ex7_A Guanylate kinase; subst 96.7 0.00049 1.7E-08 55.5 1.6 28 164-191 2-29 (186)
158 2jaq_A Deoxyguanosine kinase; 96.7 0.00093 3.2E-08 53.8 3.3 24 165-188 2-25 (205)
159 2ze6_A Isopentenyl transferase 96.7 0.00099 3.4E-08 56.2 3.6 25 164-188 2-26 (253)
160 1tev_A UMP-CMP kinase; ploop, 96.7 0.0011 3.7E-08 52.9 3.6 24 164-187 4-27 (196)
161 1g8p_A Magnesium-chelatase 38 96.7 0.00094 3.2E-08 58.6 3.5 50 137-188 21-70 (350)
162 2plr_A DTMP kinase, probable t 96.7 0.0018 6.1E-08 52.4 4.8 28 164-191 5-32 (213)
163 2c95_A Adenylate kinase 1; tra 96.7 0.0011 3.7E-08 53.1 3.5 25 163-187 9-33 (196)
164 1nn5_A Similar to deoxythymidy 96.6 0.0017 5.9E-08 52.7 4.7 28 163-190 9-36 (215)
165 2dr3_A UPF0273 protein PH0284; 96.6 0.0014 4.7E-08 54.4 4.2 36 163-198 23-58 (247)
166 3cm0_A Adenylate kinase; ATP-b 96.6 0.0012 4E-08 52.5 3.5 25 163-187 4-28 (186)
167 1kgd_A CASK, peripheral plasma 96.6 0.001 3.4E-08 53.0 3.0 25 164-188 6-30 (180)
168 2bwj_A Adenylate kinase 5; pho 96.6 0.0012 4E-08 53.0 3.4 25 164-188 13-37 (199)
169 4eun_A Thermoresistant glucoki 96.6 0.0011 3.9E-08 53.6 3.3 25 163-187 29-53 (200)
170 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.00099 3.4E-08 61.9 3.3 44 141-188 23-66 (500)
171 2vli_A Antibiotic resistance p 96.6 0.00079 2.7E-08 53.3 2.3 25 164-188 6-30 (183)
172 1y63_A LMAJ004144AAA protein; 96.6 0.0012 4E-08 52.8 3.2 24 163-186 10-33 (184)
173 1ukz_A Uridylate kinase; trans 96.6 0.0015 5.1E-08 52.8 3.8 26 162-187 14-39 (203)
174 1qf9_A UMP/CMP kinase, protein 96.6 0.0014 4.9E-08 52.1 3.6 26 163-188 6-31 (194)
175 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.6E-08 55.2 3.6 28 161-188 20-47 (252)
176 1tue_A Replication protein E1; 96.6 0.002 7E-08 52.6 4.5 41 148-189 44-84 (212)
177 1tf7_A KAIC; homohexamer, hexa 96.6 0.0091 3.1E-07 55.7 9.6 48 150-197 268-315 (525)
178 3tau_A Guanylate kinase, GMP k 96.6 0.0012 4.2E-08 53.8 3.2 27 163-189 8-34 (208)
179 1cke_A CK, MSSA, protein (cyti 96.6 0.0013 4.3E-08 54.1 3.3 24 164-187 6-29 (227)
180 2pt5_A Shikimate kinase, SK; a 96.6 0.0013 4.3E-08 51.4 3.1 24 165-188 2-25 (168)
181 1uf9_A TT1252 protein; P-loop, 96.6 0.0014 4.8E-08 52.7 3.5 26 161-186 6-31 (203)
182 1xjc_A MOBB protein homolog; s 96.5 0.0022 7.6E-08 50.8 4.5 35 163-197 4-39 (169)
183 2cdn_A Adenylate kinase; phosp 96.5 0.0013 4.6E-08 53.0 3.3 26 163-188 20-45 (201)
184 2qor_A Guanylate kinase; phosp 96.5 0.001 3.5E-08 54.0 2.6 26 163-188 12-37 (204)
185 2bdt_A BH3686; alpha-beta prot 96.5 0.0014 4.6E-08 52.4 3.3 22 164-185 3-24 (189)
186 1gvn_B Zeta; postsegregational 96.5 0.0022 7.6E-08 55.2 4.7 25 163-187 33-57 (287)
187 2pbr_A DTMP kinase, thymidylat 96.5 0.0014 4.8E-08 52.2 3.3 25 165-189 2-26 (195)
188 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4E-08 51.8 2.7 24 165-188 4-27 (173)
189 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.9E-08 53.7 3.3 26 163-188 4-29 (220)
190 2if2_A Dephospho-COA kinase; a 96.5 0.0014 4.7E-08 53.0 3.1 21 165-185 3-23 (204)
191 3a00_A Guanylate kinase, GMP k 96.5 0.00099 3.4E-08 53.3 2.3 27 164-190 2-28 (186)
192 2ck3_D ATP synthase subunit be 96.5 0.0052 1.8E-07 56.4 7.1 86 163-252 153-264 (482)
193 3asz_A Uridine kinase; cytidin 96.5 0.002 6.8E-08 52.3 4.0 27 162-188 5-31 (211)
194 3tr0_A Guanylate kinase, GMP k 96.5 0.0014 4.8E-08 52.8 3.0 24 164-187 8-31 (205)
195 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0017 5.8E-08 54.9 3.6 26 163-188 4-29 (260)
196 2wwf_A Thymidilate kinase, put 96.5 0.0025 8.7E-08 51.6 4.5 28 163-190 10-37 (212)
197 1fx0_B ATP synthase beta chain 96.5 0.012 4E-07 54.3 9.3 86 163-252 165-277 (498)
198 2px0_A Flagellar biosynthesis 96.4 0.031 1E-06 48.2 11.4 27 163-189 105-131 (296)
199 2j41_A Guanylate kinase; GMP, 96.4 0.0015 5.3E-08 52.6 3.0 25 163-187 6-30 (207)
200 1gtv_A TMK, thymidylate kinase 96.4 0.0015 5E-08 53.1 2.9 25 165-189 2-26 (214)
201 3cmu_A Protein RECA, recombina 96.4 0.0069 2.4E-07 64.5 8.4 92 150-251 1413-1515(2050)
202 2bbw_A Adenylate kinase 4, AK4 96.4 0.0018 6.1E-08 54.2 3.3 25 163-187 27-51 (246)
203 2qt1_A Nicotinamide riboside k 96.4 0.0022 7.6E-08 52.0 3.7 27 161-187 19-45 (207)
204 3fb4_A Adenylate kinase; psych 96.4 0.0019 6.5E-08 52.7 3.3 23 165-187 2-24 (216)
205 3p32_A Probable GTPase RV1496/ 96.4 0.0061 2.1E-07 54.0 6.8 39 151-189 67-105 (355)
206 1ye8_A Protein THEP1, hypothet 96.4 0.002 6.9E-08 51.4 3.3 24 165-188 2-25 (178)
207 1g41_A Heat shock protein HSLU 96.4 0.002 6.7E-08 58.9 3.6 50 141-190 16-77 (444)
208 2z0h_A DTMP kinase, thymidylat 96.3 0.0021 7.3E-08 51.3 3.3 25 165-189 2-26 (197)
209 1jjv_A Dephospho-COA kinase; P 96.3 0.0019 6.7E-08 52.2 3.1 22 164-185 3-24 (206)
210 2grj_A Dephospho-COA kinase; T 96.3 0.0021 7.1E-08 52.0 3.2 26 162-187 11-36 (192)
211 1zd8_A GTP:AMP phosphotransfer 96.3 0.002 6.8E-08 53.1 3.1 24 164-187 8-31 (227)
212 4gp7_A Metallophosphoesterase; 96.3 0.0016 5.4E-08 51.4 2.4 21 163-183 9-29 (171)
213 2pez_A Bifunctional 3'-phospho 96.3 0.0027 9.3E-08 50.2 3.7 27 163-189 5-31 (179)
214 3bgw_A DNAB-like replicative h 96.3 0.011 3.6E-07 54.2 8.1 54 144-198 179-232 (444)
215 3dl0_A Adenylate kinase; phosp 96.3 0.002 6.8E-08 52.6 3.0 23 165-187 2-24 (216)
216 3vr4_D V-type sodium ATPase su 96.3 0.0061 2.1E-07 55.6 6.4 85 164-252 152-259 (465)
217 2p5t_B PEZT; postsegregational 96.3 0.0025 8.5E-08 53.7 3.4 26 163-188 32-57 (253)
218 2wsm_A Hydrogenase expression/ 96.2 0.0037 1.3E-07 51.0 4.3 43 146-190 15-57 (221)
219 3upu_A ATP-dependent DNA helic 96.2 0.0092 3.1E-07 54.7 7.4 28 165-192 47-74 (459)
220 1q57_A DNA primase/helicase; d 96.2 0.042 1.4E-06 50.9 11.9 37 162-198 241-278 (503)
221 2hf9_A Probable hydrogenase ni 96.2 0.0058 2E-07 49.9 5.4 29 162-190 37-65 (226)
222 4e22_A Cytidylate kinase; P-lo 96.2 0.0025 8.6E-08 53.7 3.2 25 163-187 27-51 (252)
223 1zak_A Adenylate kinase; ATP:A 96.2 0.0026 8.8E-08 52.2 3.2 25 164-188 6-30 (222)
224 1m7g_A Adenylylsulfate kinase; 96.2 0.0031 1.1E-07 51.4 3.6 26 163-188 25-50 (211)
225 3ake_A Cytidylate kinase; CMP 96.2 0.0028 9.4E-08 51.1 3.2 24 165-188 4-27 (208)
226 2ffh_A Protein (FFH); SRP54, s 96.2 0.016 5.4E-07 52.6 8.5 29 162-190 97-125 (425)
227 3cf2_A TER ATPase, transitiona 96.2 0.0016 5.5E-08 63.7 2.0 50 140-189 477-537 (806)
228 3be4_A Adenylate kinase; malar 96.2 0.0024 8.2E-08 52.4 2.8 24 164-187 6-29 (217)
229 2v54_A DTMP kinase, thymidylat 96.2 0.0023 8E-08 51.5 2.7 24 164-187 5-28 (204)
230 1lvg_A Guanylate kinase, GMP k 96.1 0.0023 7.9E-08 51.8 2.5 24 164-187 5-28 (198)
231 2zts_A Putative uncharacterize 96.1 0.0027 9.3E-08 52.6 3.0 37 162-198 29-66 (251)
232 3e1s_A Exodeoxyribonuclease V, 96.1 0.021 7.2E-07 53.9 9.4 34 164-197 205-238 (574)
233 3k1j_A LON protease, ATP-depen 96.1 0.0044 1.5E-07 58.9 4.8 49 139-191 40-88 (604)
234 2jeo_A Uridine-cytidine kinase 96.1 0.0038 1.3E-07 52.2 3.8 26 162-187 24-49 (245)
235 1e4v_A Adenylate kinase; trans 96.1 0.0034 1.2E-07 51.2 3.4 23 165-187 2-24 (214)
236 3ney_A 55 kDa erythrocyte memb 96.1 0.003 1E-07 51.3 3.0 26 163-188 19-44 (197)
237 1cr0_A DNA primase/helicase; R 96.1 0.0069 2.3E-07 52.0 5.5 36 163-198 35-71 (296)
238 3nwj_A ATSK2; P loop, shikimat 96.1 0.0022 7.4E-08 54.1 2.2 24 165-188 50-73 (250)
239 3aez_A Pantothenate kinase; tr 96.1 0.0041 1.4E-07 54.2 4.0 29 161-189 88-116 (312)
240 3tqc_A Pantothenate kinase; bi 96.1 0.0051 1.7E-07 53.8 4.5 29 161-189 90-118 (321)
241 2xb4_A Adenylate kinase; ATP-b 96.1 0.0035 1.2E-07 51.7 3.3 23 165-187 2-24 (223)
242 1rj9_A FTSY, signal recognitio 96.1 0.006 2E-07 53.0 4.9 29 162-190 101-129 (304)
243 1znw_A Guanylate kinase, GMP k 96.0 0.0032 1.1E-07 51.2 2.9 25 163-187 20-44 (207)
244 2f6r_A COA synthase, bifunctio 96.0 0.004 1.4E-07 53.3 3.6 24 162-185 74-97 (281)
245 1u0j_A DNA replication protein 96.0 0.006 2.1E-07 51.8 4.6 38 150-187 91-128 (267)
246 1vht_A Dephospho-COA kinase; s 96.0 0.0045 1.5E-07 50.5 3.6 23 163-185 4-26 (218)
247 1ak2_A Adenylate kinase isoenz 96.0 0.0041 1.4E-07 51.5 3.3 25 164-188 17-41 (233)
248 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 54.7 3.4 25 164-188 8-32 (340)
249 2f1r_A Molybdopterin-guanine d 95.9 0.0036 1.2E-07 49.6 2.7 27 164-190 3-29 (171)
250 2c61_A A-type ATP synthase non 95.9 0.0045 1.5E-07 56.7 3.7 84 164-250 153-258 (469)
251 3r20_A Cytidylate kinase; stru 95.9 0.0039 1.3E-07 52.0 2.8 26 163-188 9-34 (233)
252 1z6g_A Guanylate kinase; struc 95.9 0.0034 1.2E-07 51.6 2.5 25 163-187 23-47 (218)
253 3b9q_A Chloroplast SRP recepto 95.9 0.0082 2.8E-07 52.0 4.9 28 162-189 99-126 (302)
254 3cmw_A Protein RECA, recombina 95.9 0.014 4.8E-07 61.4 7.3 99 143-251 711-820 (1706)
255 1htw_A HI0065; nucleotide-bind 95.8 0.0078 2.7E-07 47.0 4.3 27 161-187 31-57 (158)
256 3fwy_A Light-independent proto 95.8 0.0093 3.2E-07 52.0 5.1 38 161-198 46-83 (314)
257 3crm_A TRNA delta(2)-isopenten 95.8 0.0049 1.7E-07 53.9 3.2 24 164-187 6-29 (323)
258 2i3b_A HCR-ntpase, human cance 95.8 0.0044 1.5E-07 49.9 2.7 24 165-188 3-26 (189)
259 1np6_A Molybdopterin-guanine d 95.8 0.0088 3E-07 47.5 4.5 32 163-194 6-38 (174)
260 2fz4_A DNA repair protein RAD2 95.8 0.23 7.8E-06 41.0 13.4 38 145-187 95-132 (237)
261 1a7j_A Phosphoribulokinase; tr 95.8 0.0033 1.1E-07 54.2 2.0 26 163-188 5-30 (290)
262 1ltq_A Polynucleotide kinase; 95.8 0.0055 1.9E-07 52.6 3.4 23 164-186 3-25 (301)
263 1s96_A Guanylate kinase, GMP k 95.8 0.0047 1.6E-07 51.0 2.8 26 163-188 16-41 (219)
264 1pzn_A RAD51, DNA repair and r 95.8 0.0058 2E-07 54.1 3.6 38 151-188 119-156 (349)
265 1sq5_A Pantothenate kinase; P- 95.7 0.007 2.4E-07 52.5 4.0 28 161-188 78-105 (308)
266 3hjn_A DTMP kinase, thymidylat 95.7 0.028 9.6E-07 45.4 7.3 33 165-197 2-34 (197)
267 3lnc_A Guanylate kinase, GMP k 95.7 0.0034 1.2E-07 51.8 1.8 25 163-187 27-52 (231)
268 1svm_A Large T antigen; AAA+ f 95.7 0.0077 2.6E-07 53.9 4.1 28 160-187 166-193 (377)
269 3cmu_A Protein RECA, recombina 95.7 0.029 1E-06 59.9 8.9 99 142-250 361-470 (2050)
270 1yrb_A ATP(GTP)binding protein 95.6 0.014 4.8E-07 48.8 5.3 27 162-188 13-39 (262)
271 3gqb_B V-type ATP synthase bet 95.6 0.012 4.1E-07 53.7 5.0 86 164-252 148-262 (464)
272 2og2_A Putative signal recogni 95.6 0.012 4.2E-07 52.2 5.0 28 162-189 156-183 (359)
273 1q3t_A Cytidylate kinase; nucl 95.6 0.0076 2.6E-07 50.0 3.5 26 162-187 15-40 (236)
274 2orw_A Thymidine kinase; TMTK, 95.6 0.012 4.1E-07 47.0 4.5 26 164-189 4-29 (184)
275 1ypw_A Transitional endoplasmi 95.5 0.0062 2.1E-07 59.9 3.2 52 139-190 476-538 (806)
276 2j37_W Signal recognition part 95.5 0.019 6.6E-07 53.2 6.3 29 162-190 100-128 (504)
277 2p67_A LAO/AO transport system 95.5 0.023 7.7E-07 50.0 6.5 29 160-188 53-81 (341)
278 2v3c_C SRP54, signal recogniti 95.5 0.0077 2.6E-07 54.9 3.5 27 163-189 99-125 (432)
279 3a8t_A Adenylate isopentenyltr 95.5 0.0055 1.9E-07 53.9 2.4 25 163-187 40-64 (339)
280 3exa_A TRNA delta(2)-isopenten 95.5 0.0075 2.6E-07 52.5 3.0 24 164-187 4-27 (322)
281 2axn_A 6-phosphofructo-2-kinas 95.5 0.014 4.9E-07 54.4 5.2 30 162-191 34-63 (520)
282 1cp2_A CP2, nitrogenase iron p 95.4 0.017 5.9E-07 48.5 5.3 34 164-197 2-35 (269)
283 1g8f_A Sulfate adenylyltransfe 95.4 0.013 4.4E-07 54.5 4.8 28 162-189 394-421 (511)
284 2qm8_A GTPase/ATPase; G protei 95.4 0.025 8.5E-07 49.7 6.5 30 160-189 52-81 (337)
285 3b85_A Phosphate starvation-in 95.4 0.0065 2.2E-07 49.7 2.4 22 165-186 24-45 (208)
286 2yhs_A FTSY, cell division pro 95.4 0.014 4.8E-07 54.0 4.8 35 162-197 292-326 (503)
287 2qe7_A ATP synthase subunit al 95.4 0.029 1E-06 51.7 7.0 85 163-252 162-265 (502)
288 4eaq_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 49.2 3.6 28 162-189 25-52 (229)
289 2pcj_A ABC transporter, lipopr 95.4 0.0066 2.2E-07 50.2 2.4 24 163-186 30-53 (224)
290 2onk_A Molybdate/tungstate ABC 95.4 0.0078 2.7E-07 50.4 2.9 24 164-187 25-48 (240)
291 3mfy_A V-type ATP synthase alp 95.4 0.031 1.1E-06 52.1 7.1 49 163-217 227-275 (588)
292 3foz_A TRNA delta(2)-isopenten 95.4 0.01 3.6E-07 51.5 3.7 25 163-187 10-34 (316)
293 1ls1_A Signal recognition part 95.4 0.016 5.6E-07 49.9 5.0 29 162-190 97-125 (295)
294 3tif_A Uncharacterized ABC tra 95.4 0.0066 2.3E-07 50.6 2.3 24 163-186 31-54 (235)
295 3end_A Light-independent proto 95.4 0.017 5.9E-07 49.7 5.1 37 161-197 39-75 (307)
296 3zvl_A Bifunctional polynucleo 95.3 0.0063 2.2E-07 55.1 2.4 26 162-187 257-282 (416)
297 3oaa_A ATP synthase subunit al 95.3 0.033 1.1E-06 51.3 7.1 85 163-253 162-266 (513)
298 1oix_A RAS-related protein RAB 95.3 0.0095 3.2E-07 47.5 3.1 24 163-186 29-52 (191)
299 2r8r_A Sensor protein; KDPD, P 95.3 0.015 5.2E-07 48.1 4.4 29 165-193 8-37 (228)
300 3cr8_A Sulfate adenylyltranfer 95.3 0.016 5.5E-07 54.4 5.0 29 162-190 368-396 (552)
301 2ocp_A DGK, deoxyguanosine kin 95.3 0.011 3.8E-07 49.1 3.5 25 164-188 3-27 (241)
302 2r9v_A ATP synthase subunit al 95.2 0.039 1.3E-06 51.0 7.2 85 163-252 175-278 (515)
303 2ck3_A ATP synthase subunit al 95.2 0.037 1.3E-06 51.1 7.0 87 163-252 162-273 (510)
304 2qmh_A HPR kinase/phosphorylas 95.2 0.0086 2.9E-07 48.6 2.5 24 164-187 35-58 (205)
305 2cbz_A Multidrug resistance-as 95.2 0.0079 2.7E-07 50.2 2.3 25 163-187 31-55 (237)
306 1w36_D RECD, exodeoxyribonucle 95.2 0.16 5.4E-06 48.3 11.6 25 164-188 165-189 (608)
307 2dyk_A GTP-binding protein; GT 95.2 0.012 4.2E-07 44.7 3.3 23 164-186 2-24 (161)
308 3gmt_A Adenylate kinase; ssgci 95.2 0.011 3.6E-07 49.2 3.1 24 164-187 9-32 (230)
309 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0098 3.3E-07 50.0 2.9 24 163-186 29-52 (250)
310 2f9l_A RAB11B, member RAS onco 95.2 0.0099 3.4E-07 47.6 2.8 24 163-186 5-28 (199)
311 1b0u_A Histidine permease; ABC 95.2 0.0083 2.8E-07 50.9 2.4 25 163-187 32-56 (262)
312 3gfo_A Cobalt import ATP-bindi 95.1 0.0085 2.9E-07 51.2 2.4 23 164-186 35-57 (275)
313 2afh_E Nitrogenase iron protei 95.1 0.022 7.5E-07 48.6 5.0 27 164-190 3-29 (289)
314 2zu0_C Probable ATP-dependent 95.1 0.011 3.6E-07 50.4 2.9 24 163-186 46-69 (267)
315 1ji0_A ABC transporter; ATP bi 95.1 0.0088 3E-07 50.0 2.3 24 163-186 32-55 (240)
316 1g6h_A High-affinity branched- 95.1 0.0088 3E-07 50.5 2.3 24 163-186 33-56 (257)
317 3eph_A TRNA isopentenyltransfe 95.1 0.014 4.8E-07 52.5 3.7 25 164-188 3-27 (409)
318 4g1u_C Hemin import ATP-bindin 95.1 0.0089 3.1E-07 50.8 2.3 24 163-186 37-60 (266)
319 3fdi_A Uncharacterized protein 95.1 0.013 4.4E-07 47.6 3.2 26 164-189 7-32 (201)
320 2v9p_A Replication protein E1; 95.1 0.016 5.6E-07 50.2 4.0 27 161-187 124-150 (305)
321 2wji_A Ferrous iron transport 95.0 0.013 4.5E-07 45.3 3.1 23 164-186 4-26 (165)
322 1mv5_A LMRA, multidrug resista 95.0 0.01 3.5E-07 49.6 2.6 25 162-186 27-51 (243)
323 2h92_A Cytidylate kinase; ross 95.0 0.0087 3E-07 48.7 2.1 23 165-187 5-27 (219)
324 2qi9_C Vitamin B12 import ATP- 95.0 0.0088 3E-07 50.3 2.1 25 164-188 27-51 (249)
325 2olj_A Amino acid ABC transpor 95.0 0.0096 3.3E-07 50.5 2.4 25 163-187 50-74 (263)
326 2pze_A Cystic fibrosis transme 95.0 0.0099 3.4E-07 49.3 2.4 25 163-187 34-58 (229)
327 1bif_A 6-phosphofructo-2-kinas 95.0 0.023 8E-07 52.2 5.1 29 163-191 39-67 (469)
328 2j9r_A Thymidine kinase; TK1, 95.0 0.024 8.2E-07 46.5 4.6 102 163-278 28-137 (214)
329 2ff7_A Alpha-hemolysin translo 95.0 0.01 3.4E-07 49.9 2.3 24 163-186 35-58 (247)
330 4edh_A DTMP kinase, thymidylat 95.0 0.054 1.8E-06 44.3 6.7 31 163-193 6-37 (213)
331 1sgw_A Putative ABC transporte 95.0 0.0084 2.9E-07 49.3 1.8 24 164-187 36-59 (214)
332 1vpl_A ABC transporter, ATP-bi 94.9 0.01 3.6E-07 50.1 2.4 24 163-186 41-64 (256)
333 2ce2_X GTPase HRAS; signaling 94.9 0.014 4.7E-07 44.5 2.9 22 165-186 5-26 (166)
334 2ghi_A Transport protein; mult 94.9 0.011 3.6E-07 50.1 2.3 25 163-187 46-70 (260)
335 3llm_A ATP-dependent RNA helic 94.9 0.15 5.2E-06 41.9 9.5 21 165-185 78-98 (235)
336 3kjh_A CO dehydrogenase/acetyl 94.9 0.026 8.7E-07 46.6 4.7 33 166-198 3-35 (254)
337 2zej_A Dardarin, leucine-rich 94.9 0.012 4E-07 46.5 2.4 21 165-185 4-24 (184)
338 2ixe_A Antigen peptide transpo 94.9 0.011 3.7E-07 50.4 2.3 24 163-186 45-68 (271)
339 2ged_A SR-beta, signal recogni 94.9 0.023 8E-07 44.8 4.2 25 162-186 47-71 (193)
340 3sop_A Neuronal-specific septi 94.9 0.015 5.2E-07 49.5 3.2 23 165-187 4-26 (270)
341 4hlc_A DTMP kinase, thymidylat 94.8 0.074 2.5E-06 43.2 7.2 29 165-193 4-32 (205)
342 2yz2_A Putative ABC transporte 94.8 0.011 3.9E-07 50.1 2.3 24 163-186 33-56 (266)
343 1tq4_A IIGP1, interferon-induc 94.8 0.012 4.1E-07 53.3 2.6 26 161-186 67-92 (413)
344 2ihy_A ABC transporter, ATP-bi 94.8 0.012 4E-07 50.5 2.4 24 163-186 47-70 (279)
345 1z2a_A RAS-related protein RAB 94.8 0.02 6.9E-07 43.8 3.5 24 163-186 5-28 (168)
346 2nq2_C Hypothetical ABC transp 94.8 0.012 4.1E-07 49.6 2.4 24 164-187 32-55 (253)
347 2gks_A Bifunctional SAT/APS ki 94.8 0.041 1.4E-06 51.7 6.1 28 162-189 371-398 (546)
348 1jr3_D DNA polymerase III, del 94.8 0.25 8.7E-06 42.9 11.0 103 151-276 8-114 (343)
349 2www_A Methylmalonic aciduria 94.7 0.033 1.1E-06 49.2 5.2 27 162-188 73-99 (349)
350 1fx0_A ATP synthase alpha chai 94.7 0.023 7.8E-07 52.5 4.2 86 163-253 163-267 (507)
351 1m8p_A Sulfate adenylyltransfe 94.7 0.026 8.8E-07 53.3 4.6 27 162-188 395-421 (573)
352 3con_A GTPase NRAS; structural 94.7 0.016 5.6E-07 45.6 2.8 23 164-186 22-44 (190)
353 2wjg_A FEOB, ferrous iron tran 94.7 0.021 7.2E-07 44.8 3.4 24 163-186 7-30 (188)
354 1u8z_A RAS-related protein RAL 94.7 0.017 5.9E-07 44.1 2.8 23 164-186 5-27 (168)
355 2vp4_A Deoxynucleoside kinase; 94.7 0.012 4.2E-07 48.5 2.1 26 161-186 18-43 (230)
356 2nzj_A GTP-binding protein REM 94.6 0.023 7.8E-07 43.9 3.5 24 163-186 4-27 (175)
357 4dzz_A Plasmid partitioning pr 94.6 0.034 1.2E-06 44.5 4.7 35 164-198 2-37 (206)
358 2yv5_A YJEQ protein; hydrolase 94.6 0.026 8.9E-07 48.8 4.1 33 148-186 155-187 (302)
359 1kao_A RAP2A; GTP-binding prot 94.6 0.018 6.1E-07 43.9 2.8 22 165-186 5-26 (167)
360 1c1y_A RAS-related protein RAP 94.6 0.018 6.1E-07 44.1 2.8 22 165-186 5-26 (167)
361 1nij_A Hypothetical protein YJ 94.6 0.019 6.5E-07 50.0 3.3 26 162-187 3-28 (318)
362 1m7b_A RND3/RHOE small GTP-bin 94.6 0.018 6.3E-07 45.2 2.9 24 163-186 7-30 (184)
363 4dkx_A RAS-related protein RAB 94.6 0.042 1.4E-06 45.0 5.2 22 165-186 15-36 (216)
364 4gzl_A RAS-related C3 botulinu 94.6 0.022 7.5E-07 45.8 3.4 24 163-186 30-53 (204)
365 1fzq_A ADP-ribosylation factor 94.6 0.03 1E-06 44.0 4.1 25 162-186 15-39 (181)
366 3kta_A Chromosome segregation 94.6 0.019 6.6E-07 45.2 3.0 22 165-186 28-49 (182)
367 3ea0_A ATPase, para family; al 94.6 0.047 1.6E-06 45.0 5.5 28 163-190 4-32 (245)
368 1z08_A RAS-related protein RAB 94.5 0.019 6.4E-07 44.1 2.8 24 163-186 6-29 (170)
369 3cmw_A Protein RECA, recombina 94.5 0.077 2.6E-06 55.9 8.0 80 161-250 1429-1518(1706)
370 1r8s_A ADP-ribosylation factor 94.5 0.02 7E-07 43.7 3.0 21 166-186 3-23 (164)
371 3nh6_A ATP-binding cassette SU 94.5 0.014 4.9E-07 50.6 2.2 25 162-186 79-103 (306)
372 2gj8_A MNME, tRNA modification 94.5 0.019 6.5E-07 44.9 2.7 23 164-186 5-27 (172)
373 3q72_A GTP-binding protein RAD 94.5 0.018 6.1E-07 44.1 2.6 21 165-185 4-24 (166)
374 1lw7_A Transcriptional regulat 94.5 0.024 8.1E-07 50.3 3.6 26 163-188 170-195 (365)
375 2pjz_A Hypothetical protein ST 94.5 0.016 5.4E-07 49.2 2.4 24 164-187 31-54 (263)
376 1ek0_A Protein (GTP-binding pr 94.5 0.02 6.9E-07 43.8 2.8 22 165-186 5-26 (170)
377 1z0j_A RAB-22, RAS-related pro 94.5 0.02 6.9E-07 43.9 2.8 23 164-186 7-29 (170)
378 2fn4_A P23, RAS-related protei 94.5 0.032 1.1E-06 43.2 4.0 25 162-186 8-32 (181)
379 2iwr_A Centaurin gamma 1; ANK 94.4 0.02 6.8E-07 44.5 2.7 23 164-186 8-30 (178)
380 1p5z_B DCK, deoxycytidine kina 94.4 0.0094 3.2E-07 50.2 0.9 26 162-187 23-48 (263)
381 1ky3_A GTP-binding protein YPT 94.4 0.021 7.3E-07 44.3 2.8 25 162-186 7-31 (182)
382 1nrj_B SR-beta, signal recogni 94.4 0.024 8.1E-07 45.8 3.2 26 162-187 11-36 (218)
383 3fvq_A Fe(3+) IONS import ATP- 94.4 0.021 7E-07 50.7 3.0 24 163-186 30-53 (359)
384 3zq6_A Putative arsenical pump 94.4 0.068 2.3E-06 46.5 6.3 28 163-190 14-41 (324)
385 2erx_A GTP-binding protein DI- 94.4 0.021 7.1E-07 43.9 2.6 23 164-186 4-26 (172)
386 1r2q_A RAS-related protein RAB 94.4 0.022 7.6E-07 43.6 2.8 23 164-186 7-29 (170)
387 3tqf_A HPR(Ser) kinase; transf 94.3 0.027 9.3E-07 44.6 3.2 23 164-186 17-39 (181)
388 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.022 7.6E-07 44.1 2.8 24 163-186 7-30 (177)
389 3ch4_B Pmkase, phosphomevalona 94.3 0.036 1.2E-06 45.0 4.1 26 162-187 10-35 (202)
390 3q85_A GTP-binding protein REM 94.3 0.028 9.7E-07 43.1 3.4 21 164-184 3-23 (169)
391 3vr4_A V-type sodium ATPase ca 94.3 0.056 1.9E-06 50.6 5.8 34 163-198 232-265 (600)
392 3ihw_A Centg3; RAS, centaurin, 94.3 0.022 7.6E-07 45.0 2.8 24 163-186 20-43 (184)
393 3tw8_B RAS-related protein RAB 94.3 0.024 8.4E-07 43.9 3.0 26 161-186 7-32 (181)
394 1svi_A GTP-binding protein YSX 94.3 0.028 9.7E-07 44.3 3.4 25 162-186 22-46 (195)
395 1z0f_A RAB14, member RAS oncog 94.3 0.023 7.9E-07 43.9 2.8 24 163-186 15-38 (179)
396 1m2o_B GTP-binding protein SAR 94.3 0.024 8.1E-07 45.0 2.9 23 164-186 24-46 (190)
397 2bbs_A Cystic fibrosis transme 94.3 0.019 6.5E-07 49.4 2.4 25 163-187 64-88 (290)
398 3hdt_A Putative kinase; struct 94.3 0.026 8.8E-07 46.6 3.1 25 163-187 14-38 (223)
399 3v9p_A DTMP kinase, thymidylat 94.3 0.058 2E-06 44.6 5.3 28 163-190 25-52 (227)
400 3t1o_A Gliding protein MGLA; G 94.3 0.023 8E-07 44.7 2.8 25 163-187 14-38 (198)
401 3c5c_A RAS-like protein 12; GD 94.2 0.024 8.1E-07 44.8 2.8 24 163-186 21-44 (187)
402 3lv8_A DTMP kinase, thymidylat 94.2 0.079 2.7E-06 44.1 6.1 35 163-197 27-62 (236)
403 3tui_C Methionine import ATP-b 94.2 0.023 7.9E-07 50.5 2.9 24 163-186 54-77 (366)
404 2hxs_A RAB-26, RAS-related pro 94.2 0.021 7.2E-07 44.3 2.4 24 163-186 6-29 (178)
405 1g16_A RAS-related protein SEC 94.2 0.035 1.2E-06 42.5 3.6 23 164-186 4-26 (170)
406 3bc1_A RAS-related protein RAB 94.2 0.025 8.5E-07 44.4 2.8 24 163-186 11-34 (195)
407 3kkq_A RAS-related protein M-R 94.2 0.025 8.6E-07 44.2 2.8 25 162-186 17-41 (183)
408 1x6v_B Bifunctional 3'-phospho 94.2 0.034 1.2E-06 52.9 4.1 27 162-188 51-77 (630)
409 2lkc_A Translation initiation 94.2 0.028 9.5E-07 43.6 3.0 25 162-186 7-31 (178)
410 1upt_A ARL1, ADP-ribosylation 94.2 0.026 8.7E-07 43.4 2.8 24 163-186 7-30 (171)
411 3io3_A DEHA2D07832P; chaperone 94.2 0.069 2.4E-06 47.1 5.9 28 161-188 16-43 (348)
412 2bme_A RAB4A, RAS-related prot 94.2 0.026 9E-07 44.1 2.9 24 163-186 10-33 (186)
413 1z47_A CYSA, putative ABC-tran 94.2 0.024 8.1E-07 50.3 2.9 24 163-186 41-64 (355)
414 4dsu_A GTPase KRAS, isoform 2B 94.2 0.025 8.7E-07 44.2 2.8 23 164-186 5-27 (189)
415 3d31_A Sulfate/molybdate ABC t 94.1 0.023 7.9E-07 50.2 2.7 24 163-186 26-49 (348)
416 2cxx_A Probable GTP-binding pr 94.1 0.026 8.8E-07 44.3 2.8 22 165-186 3-24 (190)
417 2y8e_A RAB-protein 6, GH09086P 94.1 0.027 9.3E-07 43.5 2.9 23 164-186 15-37 (179)
418 3t5g_A GTP-binding protein RHE 94.1 0.027 9.3E-07 43.9 2.9 24 163-186 6-29 (181)
419 3dz8_A RAS-related protein RAB 94.1 0.029 9.8E-07 44.4 3.1 24 163-186 23-46 (191)
420 1p9r_A General secretion pathw 94.1 0.052 1.8E-06 49.2 5.1 29 162-190 166-194 (418)
421 2oil_A CATX-8, RAS-related pro 94.1 0.026 8.8E-07 44.6 2.8 24 163-186 25-48 (193)
422 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.026 9E-07 44.0 2.8 23 164-186 6-28 (186)
423 1oxx_K GLCV, glucose, ABC tran 94.1 0.021 7.2E-07 50.6 2.4 24 163-186 31-54 (353)
424 3f9v_A Minichromosome maintena 94.1 0.01 3.5E-07 56.3 0.4 48 140-187 295-351 (595)
425 1f6b_A SAR1; gtpases, N-termin 94.1 0.024 8.2E-07 45.4 2.5 22 164-185 26-47 (198)
426 2a9k_A RAS-related protein RAL 94.1 0.027 9.3E-07 43.9 2.8 24 163-186 18-41 (187)
427 3rlf_A Maltose/maltodextrin im 94.1 0.025 8.7E-07 50.5 2.9 24 163-186 29-52 (381)
428 3bwd_D RAC-like GTP-binding pr 94.1 0.027 9.4E-07 43.8 2.8 23 164-186 9-31 (182)
429 2yyz_A Sugar ABC transporter, 94.0 0.026 8.8E-07 50.1 2.9 24 163-186 29-52 (359)
430 3ld9_A DTMP kinase, thymidylat 94.0 0.042 1.4E-06 45.4 3.9 28 162-189 20-47 (223)
431 2it1_A 362AA long hypothetical 94.0 0.026 9E-07 50.1 2.9 24 163-186 29-52 (362)
432 2atv_A RERG, RAS-like estrogen 94.0 0.028 9.6E-07 44.6 2.8 24 163-186 28-51 (196)
433 2efe_B Small GTP-binding prote 94.0 0.028 9.6E-07 43.7 2.8 24 163-186 12-35 (181)
434 3def_A T7I23.11 protein; chlor 94.0 0.051 1.8E-06 45.7 4.6 26 161-186 34-59 (262)
435 2gza_A Type IV secretion syste 94.0 0.032 1.1E-06 49.5 3.4 37 164-201 176-212 (361)
436 3clv_A RAB5 protein, putative; 94.0 0.028 9.7E-07 44.3 2.8 24 163-186 7-30 (208)
437 1g29_1 MALK, maltose transport 94.0 0.027 9.2E-07 50.3 2.9 25 163-187 29-53 (372)
438 4tmk_A Protein (thymidylate ki 94.0 0.11 3.6E-06 42.6 6.3 34 164-197 4-38 (213)
439 3fkq_A NTRC-like two-domain pr 94.0 0.052 1.8E-06 48.2 4.8 38 161-198 141-179 (373)
440 1u0l_A Probable GTPase ENGC; p 94.0 0.043 1.5E-06 47.3 4.1 34 148-186 159-192 (301)
441 1gwn_A RHO-related GTP-binding 94.0 0.03 1E-06 45.2 2.9 25 162-186 27-51 (205)
442 1h65_A Chloroplast outer envel 94.0 0.052 1.8E-06 45.8 4.6 27 160-186 36-62 (270)
443 2qnr_A Septin-2, protein NEDD5 94.0 0.026 8.9E-07 48.7 2.7 21 165-185 20-40 (301)
444 2cjw_A GTP-binding protein GEM 94.0 0.031 1.1E-06 44.5 3.0 23 163-185 6-28 (192)
445 2g6b_A RAS-related protein RAB 93.9 0.03 1E-06 43.5 2.8 24 163-186 10-33 (180)
446 3oes_A GTPase rhebl1; small GT 93.9 0.03 1E-06 44.7 2.9 25 162-186 23-47 (201)
447 1v43_A Sugar-binding transport 93.9 0.028 9.5E-07 50.1 2.9 24 163-186 37-60 (372)
448 3cbq_A GTP-binding protein REM 93.9 0.021 7.3E-07 45.6 1.9 23 162-184 22-44 (195)
449 3tkl_A RAS-related protein RAB 93.9 0.038 1.3E-06 43.5 3.5 25 162-186 15-39 (196)
450 1pui_A ENGB, probable GTP-bind 93.9 0.02 6.7E-07 46.0 1.7 24 162-185 25-48 (210)
451 3vkw_A Replicase large subunit 93.9 0.32 1.1E-05 44.2 9.9 25 161-185 159-183 (446)
452 2rcn_A Probable GTPase ENGC; Y 93.9 0.046 1.6E-06 48.4 4.2 23 165-187 217-239 (358)
453 2fg5_A RAB-22B, RAS-related pr 93.9 0.031 1.1E-06 44.2 2.9 24 163-186 23-46 (192)
454 2ew1_A RAS-related protein RAB 93.9 0.031 1.1E-06 44.9 2.9 25 162-186 25-49 (201)
455 3pqc_A Probable GTP-binding pr 93.9 0.031 1E-06 44.0 2.8 24 163-186 23-46 (195)
456 2bov_A RAla, RAS-related prote 93.9 0.03 1E-06 44.5 2.8 25 162-186 13-37 (206)
457 2obl_A ESCN; ATPase, hydrolase 93.8 0.032 1.1E-06 49.3 3.1 27 163-189 71-97 (347)
458 1jwy_B Dynamin A GTPase domain 93.8 0.032 1.1E-06 48.0 3.0 25 162-186 23-47 (315)
459 3ug7_A Arsenical pump-driving 93.8 0.12 4.2E-06 45.4 6.9 30 161-190 24-53 (349)
460 2gf0_A GTP-binding protein DI- 93.8 0.033 1.1E-06 44.1 2.9 24 163-186 8-31 (199)
461 1vg8_A RAS-related protein RAB 93.8 0.042 1.4E-06 43.8 3.6 25 162-186 7-31 (207)
462 4b3f_X DNA-binding protein smu 93.8 0.072 2.5E-06 50.9 5.7 45 148-198 194-239 (646)
463 1zd9_A ADP-ribosylation factor 93.8 0.033 1.1E-06 44.0 2.8 24 163-186 22-45 (188)
464 3reg_A RHO-like small GTPase; 93.8 0.033 1.1E-06 44.1 2.8 24 163-186 23-46 (194)
465 2fh5_B SR-beta, signal recogni 93.7 0.033 1.1E-06 44.8 2.8 24 163-186 7-30 (214)
466 3iqw_A Tail-anchored protein t 93.7 0.092 3.1E-06 46.0 5.8 36 162-197 15-50 (334)
467 2gf9_A RAS-related protein RAB 93.7 0.034 1.2E-06 43.8 2.8 24 163-186 22-45 (189)
468 2oze_A ORF delta'; para, walke 93.7 0.07 2.4E-06 45.5 5.0 39 149-190 23-64 (298)
469 3gd7_A Fusion complex of cysti 93.7 0.034 1.1E-06 49.9 3.0 24 163-186 47-70 (390)
470 2a5j_A RAS-related protein RAB 93.7 0.035 1.2E-06 43.9 2.8 24 163-186 21-44 (191)
471 3thx_A DNA mismatch repair pro 93.7 0.073 2.5E-06 53.1 5.6 23 162-184 661-683 (934)
472 1x3s_A RAS-related protein RAB 93.6 0.036 1.2E-06 43.6 2.8 24 163-186 15-38 (195)
473 1z06_A RAS-related protein RAB 93.6 0.036 1.2E-06 43.6 2.8 24 163-186 20-43 (189)
474 1moz_A ARL1, ADP-ribosylation 93.6 0.027 9.2E-07 43.9 2.0 24 162-185 17-40 (183)
475 3k53_A Ferrous iron transport 93.6 0.044 1.5E-06 46.3 3.4 24 163-186 3-26 (271)
476 2p5s_A RAS and EF-hand domain 93.6 0.036 1.2E-06 44.1 2.8 25 162-186 27-51 (199)
477 1ega_A Protein (GTP-binding pr 93.6 0.039 1.3E-06 47.6 3.1 24 163-186 8-31 (301)
478 2x77_A ADP-ribosylation factor 93.6 0.052 1.8E-06 42.6 3.6 24 162-185 21-44 (189)
479 1zbd_A Rabphilin-3A; G protein 93.5 0.036 1.2E-06 44.2 2.6 24 163-186 8-31 (203)
480 1tf7_A KAIC; homohexamer, hexa 93.5 0.054 1.9E-06 50.4 4.2 36 163-198 39-75 (525)
481 2bcg_Y Protein YP2, GTP-bindin 93.5 0.04 1.4E-06 44.0 2.9 24 163-186 8-31 (206)
482 2atx_A Small GTP binding prote 93.5 0.041 1.4E-06 43.5 2.9 24 163-186 18-41 (194)
483 2j0v_A RAC-like GTP-binding pr 93.5 0.041 1.4E-06 44.2 2.9 24 163-186 9-32 (212)
484 2fv8_A H6, RHO-related GTP-bin 93.4 0.042 1.4E-06 44.1 2.9 24 163-186 25-48 (207)
485 3thx_B DNA mismatch repair pro 93.4 0.083 2.9E-06 52.5 5.5 24 162-185 672-695 (918)
486 2b6h_A ADP-ribosylation factor 93.4 0.038 1.3E-06 43.9 2.6 23 163-185 29-51 (192)
487 3cwq_A Para family chromosome 93.4 0.086 2.9E-06 42.7 4.8 33 165-198 2-35 (209)
488 1zj6_A ADP-ribosylation factor 93.4 0.04 1.4E-06 43.3 2.7 25 162-186 15-39 (187)
489 2o52_A RAS-related protein RAB 93.4 0.04 1.4E-06 44.0 2.7 25 162-186 24-48 (200)
490 2gk6_A Regulator of nonsense t 93.4 0.11 3.6E-06 49.6 6.1 34 165-198 197-230 (624)
491 3lxx_A GTPase IMAP family memb 93.4 0.05 1.7E-06 44.9 3.4 25 162-186 28-52 (239)
492 2hup_A RAS-related protein RAB 93.4 0.043 1.5E-06 43.9 2.9 24 163-186 29-52 (201)
493 2h17_A ADP-ribosylation factor 93.4 0.041 1.4E-06 43.0 2.7 24 163-186 21-44 (181)
494 3llu_A RAS-related GTP-binding 93.4 0.034 1.2E-06 44.3 2.2 24 163-186 20-43 (196)
495 2q3h_A RAS homolog gene family 93.3 0.04 1.4E-06 43.8 2.6 24 163-186 20-43 (201)
496 2gco_A H9, RHO-related GTP-bin 93.3 0.044 1.5E-06 43.7 2.9 24 163-186 25-48 (201)
497 3cph_A RAS-related protein SEC 93.3 0.043 1.5E-06 43.9 2.8 24 163-186 20-43 (213)
498 3tmk_A Thymidylate kinase; pho 93.3 0.055 1.9E-06 44.4 3.5 26 164-189 6-31 (216)
499 2j1l_A RHO-related GTP-binding 93.3 0.042 1.4E-06 44.4 2.7 24 163-186 34-57 (214)
500 1byi_A Dethiobiotin synthase; 93.3 0.088 3E-06 42.7 4.7 27 164-190 2-29 (224)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.98 E-value=1.5e-33 Score=230.29 Aligned_cols=127 Identities=35% Similarity=0.641 Sum_probs=107.5
Q ss_pred CCCCCCCCCCceeEEEeccccccccCchHHHHHHHhhCCCceeecC-cccCCccchHHHHHHHHHhHHHH----------
Q 047481 6 SSSPSSPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDD-QLNRGDEISQSLLDAIEASAISR---------- 74 (279)
Q Consensus 6 ~~~~~~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i---------- 74 (279)
++||++++.++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|
T Consensus 25 ~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S 104 (204)
T 3ozi_A 25 TNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADS 104 (204)
T ss_dssp ---------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGC
T ss_pred CCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccC
Confidence 4455567789999999999999999999999999999999999998 99999999999999999999998
Q ss_pred -----HHHHH------------------------------HHHHhhh-----chHHHHHHHHHHHHhhcccccCCCCCCh
Q 047481 75 -----EMANW------------------------------LEERFKE-----NSEKLQTWRNALKEAADLSGFHSQNIRP 114 (279)
Q Consensus 75 -----EL~~i------------------------------~~~~~~~-----~~~~~~~wr~al~~~a~l~g~~~~~~~~ 114 (279)
||++| |++.|.. ..+++++||.||++||+++||++.++..
T Consensus 105 ~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~ 184 (204)
T 3ozi_A 105 KWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDK 184 (204)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCC
Confidence 99988 3333321 2368999999999999999999999988
Q ss_pred hHHHHHHHHHHHhhcccc
Q 047481 115 ESELVREVVNQILKRLAE 132 (279)
Q Consensus 115 e~~~i~~iv~~i~~~l~~ 132 (279)
|.+++++|+++|+.+|+.
T Consensus 185 e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 185 QGAIADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.97 E-value=1.7e-32 Score=220.62 Aligned_cols=123 Identities=43% Similarity=0.657 Sum_probs=91.7
Q ss_pred CCCCCceeEEEeccccccccCchHHHHHHHhhCCCceeecC-cccCCccchHHHHHHHHHhHHHH---------------
Q 047481 11 SPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDD-QLNRGDEISQSLLDAIEASAISR--------------- 74 (279)
Q Consensus 11 ~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i--------------- 74 (279)
++..++|||||||||+|+|++|++||+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 44678999999999999999999999999999999999998 99999999999999999999998
Q ss_pred HHHHH-----------------------------HHHHhh-----hchHHHHHHHHHHHHhhcccccCCCCCChhHHHHH
Q 047481 75 EMANW-----------------------------LEERFK-----ENSEKLQTWRNALKEAADLSGFHSQNIRPESELVR 120 (279)
Q Consensus 75 EL~~i-----------------------------~~~~~~-----~~~~~~~~wr~al~~~a~l~g~~~~~~~~e~~~i~ 120 (279)
||++| |++.|. .+.+++++||+||+++|+++||++. .+|+++|+
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~ 160 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVD 160 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHH
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHH
Confidence 99998 333332 3457899999999999999999994 55999999
Q ss_pred HHHHHHhhcccccCC
Q 047481 121 EVVNQILKRLAEVSP 135 (279)
Q Consensus 121 ~iv~~i~~~l~~~~~ 135 (279)
+||++|+++|++.+|
T Consensus 161 ~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 161 KIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHTTCC----
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999987665
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.88 E-value=1.2e-22 Score=192.69 Aligned_cols=126 Identities=24% Similarity=0.263 Sum_probs=102.7
Q ss_pred cccchhhHHHHHhhccC-CCCeEEEEEeecccchHHHHHHHHHH----HhhcCCCceEEEeecccccCCC--CCHHHHHH
Q 047481 143 VGVESRVEEIESLLGAE-SKDVYALGIWGIGGIGKTTIARAIFN----NISSNFEGSCFLQNVREESQRP--GGLGCLQQ 215 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~~~~~--~~~~~l~~ 215 (279)
+||+.++++|.++|... .+.+++|+|+||||+||||||+++|+ ++..+|++++|++ ++. . +++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~-~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSG-TAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCC-CSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECC-CCCCCHHHHHH
Confidence 49999999999999654 44689999999999999999999997 5788899999995 333 3 46889999
Q ss_pred HHHHHHhcCC------C-----chhhHHHHHHHhCCC-cEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEeccC
Q 047481 216 KLLSKLLQDH------N-----VIPDIALSFRRLSSR-KFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 216 ~ll~~l~~~~------~-----~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
.++.++.... + .......+++.|+++ |+||||||||+.+++ .+... +||+||||||++
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~-----~gs~ilvTTR~~ 275 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQE-----LRLRCLVTTRDV 275 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH-----TTCEEEEEESBG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccccc-----CCCEEEEEcCCH
Confidence 9999887541 1 123478899999996 999999999998876 33222 699999999974
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=1.1e-20 Score=193.23 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=101.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH---hhcCCCceEEEeecccccCCCCCHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN---ISSNFEGSCFLQNVREESQRPGGLGCL 213 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l 213 (279)
..+..|+||+.++++|.++|....+.+++|+|+||||+||||||+++|++ ...+|...+|+..+..... ......
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 198 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGLLMK 198 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHHHHH
Confidence 56678999999999999999766667899999999999999999999987 3556777775554443211 223334
Q ss_pred HHHHHHHHhcC--------CCchhhHHHHHHHhCCC--cEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEeccC
Q 047481 214 QQKLLSKLLQD--------HNVIPDIALSFRRLSSR--KFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 214 ~~~ll~~l~~~--------~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
...++..+... .+.+.....++..|.++ |+||||||||+..+|+.+ ++||+||||||++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 45566655543 23455667778888776 999999999999877664 5799999999985
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.80 E-value=1.2e-19 Score=178.95 Aligned_cols=128 Identities=20% Similarity=0.148 Sum_probs=95.3
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH--hhcCCCceEEEeecccccCCCCCHHHHHHHH
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN--ISSNFEGSCFLQNVREESQRPGGLGCLQQKL 217 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 217 (279)
+..+||+.++++|.++|... +++++|+|+||||+||||||+++|++ +..+|+..++|.+++ + ..+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs---~-~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---N-CNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC---C-SSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC---C-CCCHHHHHHHH
Confidence 34599999999999999753 34789999999999999999999974 677899844444343 3 45566666666
Q ss_pred HHHHhc---C----C--------CchhhHHHHHHHh---CCCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEeccC
Q 047481 218 LSKLLQ---D----H--------NVIPDIALSFRRL---SSRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 218 l~~l~~---~----~--------~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
+..+.. . . +.+.....+++.| +++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 553321 1 1 1123345566655 6899999999999999888762 699999999985
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=170.90 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=94.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh---hcCCCc-eEEEeecccccCCCCCHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI---SSNFEG-SCFLQNVREESQRPGGLGC 212 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~---~~~f~~-~~~~~~~~~~~~~~~~~~~ 212 (279)
..+..|+||+.++++|.++|....+..++|+|+||||+||||||.+++++. ..+|+. ++|+. +... ....
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~~~~ 194 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----DKSG 194 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----CHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----chHH
Confidence 566789999999999999998655668999999999999999999999864 667964 55554 3321 2222
Q ss_pred HHHHH---HHHHhcC--------CCchhhHHHHHHHhCC--CcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEeccC
Q 047481 213 LQQKL---LSKLLQD--------HNVIPDIALSFRRLSS--RKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRNQ 279 (279)
Q Consensus 213 l~~~l---l~~l~~~--------~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 279 (279)
+...+ +..+... .+.+.....+...+.+ +++||||||+|+..+++.+ ++|++||||||++
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 33332 3333311 2334456667777765 7999999999998766543 5799999999974
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.63 E-value=4.9e-17 Score=129.01 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=57.7
Q ss_pred CCCCCceeEEEeccccccccCchHHHHHHHhhCCCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 11 SPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQKGIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 11 ~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
..+.++|||||||+|+| +..|++||+.+|+++||++|+|+ ++.+|+.+.+++.++|++|+++|
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i 78 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEE
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEE
Confidence 45679999999999999 67899999999999999999999 89999999999999999999887
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.39 E-value=6.6e-15 Score=115.43 Aligned_cols=63 Identities=25% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCCCCCceeEEEeccccccccCchHHHHHHHhh--CCCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 10 SSPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQ--KGIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 10 ~~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~--~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
|......|||||||+++|+ .|+++|+.+|++ +|+++|+|+ ++.+|+.+.+++.+||++|++.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I 69 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRV 69 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEE
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEE
Confidence 3556789999999999995 479999999998 699999999 99999999999999999999988
No 9
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=9.8e-12 Score=112.79 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCCCCccccchhhHHHHHhh-cc--CC--CCeEEEEE--eecccchHHHHHHHHHHHhhcC-----CCc-eEEEeecccc
Q 047481 137 SNKNPLVGVESRVEEIESLL-GA--ES--KDVYALGI--WGIGGIGKTTIARAIFNNISSN-----FEG-SCFLQNVREE 203 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~~i~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~-~~~~~~~~~~ 203 (279)
..+..|+||+.++++|..+| .. .. ...+.+.| +|++|+||||||+.+++..... +.. .+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 45578999999999999988 42 11 23445666 9999999999999999987542 233 33443 2
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CCchhhHHHHHHHhC--CCcEEEEEeCCCCh
Q 047481 204 SQRPGGLGCLQQKLLSKLLQD-----HNVIPDIALSFRRLS--SRKFLIVLDDVTCF 253 (279)
Q Consensus 204 ~~~~~~~~~l~~~ll~~l~~~-----~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 253 (279)
.. ..+...+...++..+... .+.......+...+. +++++|||||++..
T Consensus 95 ~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 95 FN-APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp GG-CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred CC-CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 22 456778888888877543 122334555666664 68999999999654
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=2.7e-11 Score=108.90 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=89.9
Q ss_pred CCCccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcC------C-Cc-eEEEeecccccCCCC
Q 047481 139 KNPLVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSN------F-EG-SCFLQNVREESQRPG 208 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~------f-~~-~~~~~~~~~~~~~~~ 208 (279)
+..++||+.+++++..+|.. .....+.+.|+|++|+||||||+.+++.+... + .. .+++. ... ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~----~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE----VG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH----HC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc----CC
Confidence 47899999999999988864 23445689999999999999999999987432 2 22 33333 221 23
Q ss_pred -CHHHHHHHHHHHHhcC------CCchhhHHHHHHHhCCCcEEEEEeCCCChHH-------HHHHhhcCCCCCCCeEEEE
Q 047481 209 -GLGCLQQKLLSKLLQD------HNVIPDIALSFRRLSSRKFLIVLDDVTCFKQ-------IKSLIRSHDWYMAESRIII 274 (279)
Q Consensus 209 -~~~~l~~~ll~~l~~~------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gsrIii 274 (279)
+...+...++..+.+. .+.......+...+..++.+|||||++.... +..+... . .+..||+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEE
Confidence 5667777777777432 2234556777778877766999999976532 2333322 2 6888998
Q ss_pred Eecc
Q 047481 275 TTRN 278 (279)
Q Consensus 275 TTR~ 278 (279)
||+.
T Consensus 170 ~t~~ 173 (384)
T 2qby_B 170 ISND 173 (384)
T ss_dssp ECSS
T ss_pred EECC
Confidence 8874
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=6.6e-11 Score=106.13 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=88.1
Q ss_pred CCCCCccccchhhHHHHHhhccC--CCCeEEEEEeecccchHHHHHHHHHHHhhcCC-----Cc-eEEEeecccccCCCC
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIGKTTIARAIFNNISSNF-----EG-SCFLQNVREESQRPG 208 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f-----~~-~~~~~~~~~~~~~~~ 208 (279)
..+..++||+.+++++..++... ....+.+.|+|++|+||||||+.+++.+...+ .. .+++. ... ..
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~-~~ 90 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARH-RE 90 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTT-SC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCc-CC
Confidence 44578999999999999998542 34466889999999999999999999874421 22 23333 222 44
Q ss_pred CHHHHHHHHHHHHhcC-----CCchhhHHHHHHHhC--CCcEEEEEeCCCChH----H---HHHHhhcCCCC--CCCeEE
Q 047481 209 GLGCLQQKLLSKLLQD-----HNVIPDIALSFRRLS--SRKFLIVLDDVTCFK----Q---IKSLIRSHDWY--MAESRI 272 (279)
Q Consensus 209 ~~~~l~~~ll~~l~~~-----~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gsrI 272 (279)
+...+...++..+... .+.......+...+. +++.+|||||++... . +..+....... ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 5667777787777543 123344556666663 568999999997653 2 22333222111 345677
Q ss_pred EEEecc
Q 047481 273 IITTRN 278 (279)
Q Consensus 273 iiTTR~ 278 (279)
|.||+.
T Consensus 171 I~~t~~ 176 (387)
T 2v1u_A 171 VGITNS 176 (387)
T ss_dssp EEECSC
T ss_pred EEEECC
Confidence 777753
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.21 E-value=2.1e-12 Score=101.53 Aligned_cols=60 Identities=23% Similarity=0.415 Sum_probs=55.7
Q ss_pred CCCceeEEEeccccccccCchHH-HHHHHhhC--CCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 13 RNHKYDVFLSFRGEDTRDNFTSH-LYSALSQK--GIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 13 ~~~~ydVFisf~g~d~~~~f~~~-L~~~L~~~--gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
..+.|||||||+|+|+ .|+.+ |+.+|+++ |+++|+|+ ++.+|+.+.+++.+||++|++.|
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I 65 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTV 65 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEE
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEE
Confidence 3578999999999995 79997 99999986 99999999 99999999999999999999887
No 13
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.17 E-value=4.6e-12 Score=102.36 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=56.3
Q ss_pred CCCCCceeEEEeccccccccCchHH-HHHHHhh--CCCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 11 SPRNHKYDVFLSFRGEDTRDNFTSH-LYSALSQ--KGIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 11 ~~~~~~ydVFisf~g~d~~~~f~~~-L~~~L~~--~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
......|||||||+|+|+ .|+.+ |+.+|++ +|+++|+|+ ++.+|+.+.+++.+||++|+..|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I 95 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSI 95 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEE
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEE
Confidence 456789999999999994 89985 9999998 899999999 99999999999999999999888
No 14
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.17 E-value=2.6e-11 Score=107.32 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=80.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeeccccc--CCCCCHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREES--QRPGGLGCLQ 214 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~l~ 214 (279)
..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. ..... ........+.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELI 78 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHH
Confidence 55678999999999999998753 5899999999999999999998751 45554 22211 0011334444
Q ss_pred HHHHHHHhc-----------------C-----CCchhhHHHHHHHhCC-CcEEEEEeCCCChH--------H-HHHHhhc
Q 047481 215 QKLLSKLLQ-----------------D-----HNVIPDIALSFRRLSS-RKFLIVLDDVTCFK--------Q-IKSLIRS 262 (279)
Q Consensus 215 ~~ll~~l~~-----------------~-----~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~--------~-~~~l~~~ 262 (279)
..+...+.. . .+.......+...+.. ++++|||||++... + +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 444443221 0 1223334445444432 49999999996532 2 2222221
Q ss_pred CCCCCCCeEEEEEecc
Q 047481 263 HDWYMAESRIIITTRN 278 (279)
Q Consensus 263 ~~~~~~gsrIiiTTR~ 278 (279)
.. ..++.++|+|++.
T Consensus 159 ~~-~~~~~~~il~g~~ 173 (350)
T 2qen_A 159 YD-SLPNLKIILTGSE 173 (350)
T ss_dssp HH-HCTTEEEEEEESS
T ss_pred HH-hcCCeEEEEECCc
Confidence 11 1247889998764
No 15
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.16 E-value=3.5e-12 Score=101.42 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCCCCceeEEEeccccccccCchHHHHHHHhhC--CCceeecC-cccCCccchHHHHHHHH-HhHHHH
Q 047481 11 SPRNHKYDVFLSFRGEDTRDNFTSHLYSALSQK--GIEAFIDD-QLNRGDEISQSLLDAIE-ASAISR 74 (279)
Q Consensus 11 ~~~~~~ydVFisf~g~d~~~~f~~~L~~~L~~~--gi~~f~D~-~l~~g~~i~~~l~~ai~-~s~~~i 74 (279)
.+..+.|||||||+++| ..|+.+|+.+|+++ |+++|+|+ ++.+|+.+.+++.++|+ .|+..|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~I 76 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMV 76 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEE
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEE
Confidence 34467899999999999 68999999999984 69999999 99999999999999998 698877
No 16
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=8.1e-11 Score=104.30 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=43.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~ 62 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD 62 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE
Confidence 556789999999999999 764 589999999999999999999887532 45554
No 17
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.14 E-value=5e-10 Score=100.58 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=90.6
Q ss_pred CCCCCccccchhhHHHHHhhcc----CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC-CceEEEeecccccCCCCCHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF-EGSCFLQNVREESQRPGGLG 211 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~ 211 (279)
..+..++||+.+++++..++.. .....+.+.|+|++|+|||||++.++....... ...+++. ... .....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~-~~~~~ 88 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFI-YRNFT 88 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTT-CCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----Ccc-CCCHH
Confidence 4457899999999999998865 122234899999999999999999999876543 2334443 222 44566
Q ss_pred HHHHHHHHHHhcC-----CCchhhHHHHHHHhC--CCcEEEEEeCCCCh--HHHHHHhhcCCCCC----CCeEEEEEecc
Q 047481 212 CLQQKLLSKLLQD-----HNVIPDIALSFRRLS--SRKFLIVLDDVTCF--KQIKSLIRSHDWYM----AESRIIITTRN 278 (279)
Q Consensus 212 ~l~~~ll~~l~~~-----~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gsrIiiTTR~ 278 (279)
.+...++..+... .+.......+...+. +++.+|||||++.. ..+..|...+.... .+..||+||++
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 7777777766432 122333444555443 67899999999753 44556655543222 36778888764
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=6.7e-11 Score=105.95 Aligned_cols=137 Identities=19% Similarity=0.266 Sum_probs=85.0
Q ss_pred CCCCCccccchhhHHHHHhhccC--CCCeEEEEEeecccchHHHHHHHHHHHhhcCCC---ceEEEeecccccCCCCCHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE--SKDVYALGIWGIGGIGKTTIARAIFNNISSNFE---GSCFLQNVREESQRPGGLG 211 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 211 (279)
..+..|+||+.+++.+..++... ......+.|+|++|+||||||+.+++.+...+. ..+++. .. . .....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~---~-~~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TR---Q-IDTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HH---H-HCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CC---C-CCCHH
Confidence 45678999999999999988742 344668999999999999999999998765542 233443 11 1 23444
Q ss_pred HHHHHHHHHHhcC-----CCchhhHHHHHHHhC--CCcEEEEEeCCCCh------HHHHHHhhcCCC-CCCCeEEEEEec
Q 047481 212 CLQQKLLSKLLQD-----HNVIPDIALSFRRLS--SRKFLIVLDDVTCF------KQIKSLIRSHDW-YMAESRIIITTR 277 (279)
Q Consensus 212 ~l~~~ll~~l~~~-----~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gsrIiiTTR 277 (279)
.+...++..+... .+.......+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 5555555544322 122333455555553 45899999999653 234444333211 134566777776
Q ss_pred c
Q 047481 278 N 278 (279)
Q Consensus 278 ~ 278 (279)
+
T Consensus 172 ~ 172 (386)
T 2qby_A 172 D 172 (386)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.11 E-value=8.1e-12 Score=99.20 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=53.9
Q ss_pred CceeEEEecccccc---------ccCchHHHHH-HHh-hCCCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 15 HKYDVFLSFRGEDT---------RDNFTSHLYS-ALS-QKGIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 15 ~~ydVFisf~g~d~---------~~~f~~~L~~-~L~-~~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
..|||||||+++|+ ++.|+.+|+. .|+ ++|+++|+|+ ++.+|+.+.+++.++|++|+..|
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~I 72 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLI 72 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEE
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEE
Confidence 36999999999997 4789999776 699 7999999999 99999999999999999999887
No 20
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=7e-10 Score=91.27 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=75.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQ 215 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 215 (279)
.....++|++..++.+..++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+. .. ..+...+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 87 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SD-ERGIDVVRH 87 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TC-TTCHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---cc-ccChHHHHH
Confidence 344578999999999999997542 2348999999999999999999986443 3322222211 11 222222222
Q ss_pred HHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 216 KLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 216 ~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
. +........ ....++.+|||||++.. ...+.+...+.....++++|+||+.
T Consensus 88 ~-~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 88 K-IKEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp H-HHHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred H-HHHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 1 111111100 01257899999999754 3344454444334567889988864
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.95 E-value=5.7e-09 Score=86.76 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=75.1
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
.....++|++..++.+..++..+. ..+.+.|+|++|+||||||+.+++.+...+.....- ....... ..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP---------CGVCDNC-RE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC---------CSCSHHH-HH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CcccHHH-HH
Confidence 334569999999999999987542 234788999999999999999999875443211000 0000000 00
Q ss_pred HHHHHhcC-----CCchhhHH---HHHHH-----hCCCcEEEEEeCCCC--hHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 217 LLSKLLQD-----HNVIPDIA---LSFRR-----LSSRKFLIVLDDVTC--FKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 217 ll~~l~~~-----~~~~~~~~---~l~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+....... ........ .+.+. ..+++.+|||||++. ...+..+...+.....+..+|+||++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 00000000 00001111 11111 134689999999965 44566666555444568889988864
No 22
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=7.5e-09 Score=90.98 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=71.1
Q ss_pred ccccchhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCC-----c--eEEEeecccccCCCCCHHH
Q 047481 142 LVGVESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFE-----G--SCFLQNVREESQRPGGLGC 212 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~-----~--~~~~~~~~~~~~~~~~~~~ 212 (279)
+.||+.++++|...|.. .....+.+.|+|++|+|||++++.+++++..... . .+++. ... ..+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~-~~t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALE-LAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTC-CC--HH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccc-cCCHHH
Confidence 78999999999988865 2445678899999999999999999999754321 1 23332 111 345567
Q ss_pred HHHHHHHHHhcCC----CchhhHHHHHHHh---CCCcEEEEEeCCCCh
Q 047481 213 LQQKLLSKLLQDH----NVIPDIALSFRRL---SSRKFLIVLDDVTCF 253 (279)
Q Consensus 213 l~~~ll~~l~~~~----~~~~~~~~l~~~l---~~k~~LlVlDdv~~~ 253 (279)
+...++.++.+.. ........+-..+ .+++++++||+++..
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 7778888886541 1112222222222 457899999999765
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=7.6e-09 Score=90.46 Aligned_cols=124 Identities=17% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCc-eEEEeecccccCCCCCHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEG-SCFLQNVREESQRPGGLGCLQ 214 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l~ 214 (279)
.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+.+. ... ..+...+.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~-~~~~~~i~ 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASD-DRGIDVVR 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTS-CCSHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----Ccc-ccChHHHH
Confidence 334579999999999999987543 2338899999999999999999986432 222 22222 111 12222221
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHh-CCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 215 QKLLSKLLQDHNVIPDIALSFRRL-SSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 215 ~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.++..+.... ..+ .+++.++||||++.. ...+.|...+....+++++|+||.+
T Consensus 91 -~~~~~~~~~~----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 91 -NQIKHFAQKK----------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp -THHHHHHHBC----------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred -HHHHHHHhcc----------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 1222211000 011 356899999999753 3444454443333467888888854
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.78 E-value=2e-08 Score=80.42 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=42.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|++..++++...+... ....+.|+|++|+|||+||+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567999999999999998753 3456789999999999999999998644
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=2e-08 Score=87.91 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHH--H
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCL--Q 214 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l--~ 214 (279)
.....++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+........++. .. ..+.... .
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~----~~--~~~~~~~~~~ 93 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE----LN--ASDERGINVI 93 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE----EE--TTCHHHHHTT
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE----ee--ccccCchHHH
Confidence 44567999999999999998754 2334899999999999999999998643321111221 10 1111110 0
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 215 QKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 215 ~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
...+........ ...+++.++|+||++.. .....|...+.....++++|+||..
T Consensus 94 ~~~~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 94 REKVKEFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp HHHHHHHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHHHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 001111000000 01256889999999754 4455555444444567889888753
No 26
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.70 E-value=1e-07 Score=76.12 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=42.2
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|++..++.+.+.+... ....+.|+|++|+|||+||+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34467999999999999988753 3446789999999999999999998754
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=2.7e-08 Score=85.72 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=41.8
Q ss_pred CCCCCccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|++..+++|.+.+... ......+.|+|++|+|||+||+.+++....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44567899999999998877431 133557899999999999999999988643
No 28
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.56 E-value=2.7e-07 Score=80.32 Aligned_cols=124 Identities=16% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQ 215 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 215 (279)
.....++|++..++.+..++..+ ..+.+.++|++|+|||++|+.+++.+... +...+...+...... ...+..+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIK 90 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHHHHHH
Confidence 33456899999999999988754 23348899999999999999999986332 222111111111100 011111111
Q ss_pred HHHHHHhcCCCchhhHHHHHHHh-CCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 216 KLLSKLLQDHNVIPDIALSFRRL-SSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 216 ~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.+.. .. .+ .+++.++||||++.. .....|...+....+++++|+||..
T Consensus 91 ~~~~----~~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 91 EFAR----TA-----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp HHHH----SC-----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred HHHh----cC-----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 1110 00 01 256889999999754 4456677666655678888888753
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.54 E-value=4.9e-07 Score=80.80 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHH
Q 047481 115 ESELVREVVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIF 184 (279)
Q Consensus 115 e~~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~ 184 (279)
+...++.+.+.+.....+ .....++|.+..++.|.+.+.. .......|.|+|++|+|||+||+.++
T Consensus 63 ~~~~~~~i~~~i~~~~~~----~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPP----VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCCSCC----CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCCC----CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 456666666666544332 4446789999999998887642 11235678899999999999999999
Q ss_pred HHhh
Q 047481 185 NNIS 188 (279)
Q Consensus 185 ~~~~ 188 (279)
+...
T Consensus 139 ~~~~ 142 (357)
T 3d8b_A 139 SQSG 142 (357)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8863
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.48 E-value=5e-07 Score=78.61 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHhhccC-------------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 141 PLVGVESRVEEIESLLGAE-------------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~-------------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.++|.+..++.|.+++... ......+.|+|++|+|||+||+.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678888777777655321 233557899999999999999999988754
No 31
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.47 E-value=4.5e-07 Score=72.72 Aligned_cols=96 Identities=24% Similarity=0.238 Sum_probs=52.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
...++|+|++|+||||||+.++..+.. .-....++. ...+...+....... ....... .+. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~----~~~-~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----------TKDLIFRLKHLMDEG-KDTKFLK----TVL-N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHHHHHHHHHHHHHT-CCSHHHH----HHH-T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHhcCc-hHHHHHH----Hhc-C
Confidence 458899999999999999999998752 222233443 122333332222211 1112111 222 4
Q ss_pred cEEEEEeCCCC--hHH-----HHHHhhcCCCCCCCeEEEEEec
Q 047481 242 KFLIVLDDVTC--FKQ-----IKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 242 ~~LlVlDdv~~--~~~-----~~~l~~~~~~~~~gsrIiiTTR 277 (279)
.-+|||||++. .+. +..++... ...|..||+||.
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~--~~~~~~ii~tsn 141 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYR--YNNLKSTIITTN 141 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHH--HHTTCEEEEECC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHH--HHcCCCEEEEcC
Confidence 56899999962 222 22222221 124778888885
No 32
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.45 E-value=9.3e-07 Score=78.75 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=42.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|++..++.+...+..+. ....+.|+|++|+||||||+.+++.+..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344679999999999999886532 2347889999999999999999998754
No 33
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.44 E-value=3.8e-07 Score=70.73 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 141 PLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.++|+...+.++.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 578999999998887754222334578999999999999999988753
No 34
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.3e-06 Score=77.48 Aligned_cols=50 Identities=26% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCCCCccccchhhHHHHHhh-ccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLL-GAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L-~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.+..++ ..+. ... +.|+|++|+||||||+.++..+.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 33456899999999999888 5432 223 89999999999999999999753
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=9.3e-07 Score=78.15 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=41.4
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|++..++.+..++..+. .+.+.|+|++|+||||||+.++..+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445679999999999999987543 22388999999999999999999864
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.39 E-value=7.9e-07 Score=72.53 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCCCccccch----hhHHHHHhhccCCCC--eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 138 NKNPLVGVES----RVEEIESLLGAESKD--VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 138 ~~~~~vGr~~----~~~~l~~~L~~~~~~--~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
....|++... .++.+..++...... ...+.|+|++|+|||+||+.+++.+..+....+++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3455666543 334444555432221 268889999999999999999999876554555554
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.39 E-value=7.6e-07 Score=81.80 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=68.4
Q ss_pred CCcc-ccchhh--HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCce--EEEeecccccCCCCCHHHHH
Q 047481 140 NPLV-GVESRV--EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGS--CFLQNVREESQRPGGLGCLQ 214 (279)
Q Consensus 140 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~l~ 214 (279)
+.|+ |....+ ..+..+...... ...+.|+|++|+||||||+.+++.+...++.. +++. ...+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHH
Confidence 4566 654433 233333333222 66889999999999999999999876654332 3332 12233
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh----HHHHHHhhcCCC-CCCCeEEEEEecc
Q 047481 215 QKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF----KQIKSLIRSHDW-YMAESRIIITTRN 278 (279)
Q Consensus 215 ~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gsrIiiTTR~ 278 (279)
..+...+... ....+...++.+.-+|+|||++.. ...+.++..+.. ...|..||+||.+
T Consensus 173 ~~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 173 NDLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3443333221 122344455546789999999543 222333332211 1357789998864
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.38 E-value=8.7e-07 Score=77.74 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHH
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQK 216 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (279)
.....++|.+..++.+..++..+. ...++.+.|++|+|||++|+.+++.+... .+.+. .+ ..+...+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~--~~~~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GS--DCKIDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TT--TCCHHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----cc--ccCHHHHHHH
Confidence 445679999999999999997432 24577888999999999999999887321 22222 11 2222222221
Q ss_pred HHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCChH---HHHHHhhcCCCCCCCeEEEEEec
Q 047481 217 LLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCFK---QIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 217 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
+....... ...+++.+|+|||++... ....|...+.....+.++|+||.
T Consensus 93 -~~~~~~~~-----------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 93 -LTNFASAA-----------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp -HHHHHHBC-----------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred -HHHHHhhc-----------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 11111110 012478899999998754 34444443332235678888775
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.37 E-value=5.2e-07 Score=79.37 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCCCCccccchhhHHHHHhhc----------cCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLG----------AESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..-..++|.+..++.|.+++. ........+.++|++|+|||+||+.+++....
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 444678999999888888762 11223457899999999999999999998643
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.37 E-value=4.8e-07 Score=76.65 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=38.0
Q ss_pred CCCCccccchhhHHHHHhhcc---C-------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 138 NKNPLVGVESRVEEIESLLGA---E-------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....++|.+..++++.+++.. . ....+.+.|+|++|+|||+||+.+++....
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345688888877777665421 1 123456889999999999999999998643
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.36 E-value=4.9e-06 Score=71.12 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=37.3
Q ss_pred CCCccccchhhHHHHH-------hhcc-CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 139 KNPLVGVESRVEEIES-------LLGA-ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...++|....++++.. .+.. .......+.|+|++|+|||+||+.+++...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3567888877666665 2221 234577899999999999999999999854
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.36 E-value=8.1e-07 Score=76.91 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=47.4
Q ss_pred HHHHHhhcccccCCCCCCCCccccchhhHHHHHhhccC----------CCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 122 VVNQILKRLAEVSPCSNKNPLVGVESRVEEIESLLGAE----------SKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 122 iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+++.+...+....+......++|.+..++.+.+++... ......+.|+|++|+||||||+.++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34445544443333245567999999999988876321 12345789999999999999999998864
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=1.1e-07 Score=79.29 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCCCccccc---hhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 138 NKNPLVGVE---SRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 138 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
....|+|.+ ..++.+..++..+ ..+.+.|+|++|+||||||+.+++..........++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345677743 4455555555432 4568889999999999999999998765544445554
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.35 E-value=7.3e-07 Score=79.62 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=40.0
Q ss_pred CCCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.|.+.+.. ......-|.|+|++|+|||+||+.+++.+.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4446789999999888877621 112234688999999999999999999874
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=1.1e-06 Score=82.31 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=41.8
Q ss_pred CCCCCccccchhhHHHHHhhccC---------------CCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE---------------SKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.....++|++..++++..++... .+..+.+.|+|++|+||||||+.+++.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34467999999999999998641 0134689999999999999999999987
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.31 E-value=1.2e-06 Score=76.54 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=41.5
Q ss_pred CCCCCccccchhhHHHHHhhcc---CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|++..++.+..++.. .......+.|+|++|+|||+||+.+++...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456799999999998888753 122345788999999999999999999874
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.29 E-value=2.1e-06 Score=79.00 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 137 SNKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.....++|.+...+.|.+.+.. .....+.|.|+|++|+|||+||+.+++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4456789999988888876621 11234678999999999999999999986
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.28 E-value=2.5e-06 Score=74.89 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCCcc-ccchh--hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHH
Q 047481 139 KNPLV-GVESR--VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQ 215 (279)
Q Consensus 139 ~~~~v-Gr~~~--~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 215 (279)
.+.|+ |.... ...+..++.........+.|+|++|+||||||+.+++.+...-...+++. ...+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-----------~~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-----------ADDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-----------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-----------HHHHHH
Confidence 34565 54332 23344444433323567889999999999999999998755422233443 122233
Q ss_pred HHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCChH----HHHHHhhcCC-CCCCCeEEEEEecc
Q 047481 216 KLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCFK----QIKSLIRSHD-WYMAESRIIITTRN 278 (279)
Q Consensus 216 ~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~-~~~~gsrIiiTTR~ 278 (279)
.+...+... . ...+...+. +..+|+|||++... ..+.+...+. ....|..||+||.+
T Consensus 79 ~~~~~~~~~-~----~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 79 AMVEHLKKG-T----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHT-C----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHcC-c----HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 333332211 1 112222232 36789999996432 1222222211 01246678888753
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.26 E-value=4.6e-06 Score=72.58 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=58.5
Q ss_pred CCCCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCC
Q 047481 138 NKNPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQR 206 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 206 (279)
....++|.+..+++|.+++.. +-.....+.|+|++|+|||+||+.+++..... ++. +
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~----v--- 80 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----I--- 80 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEE----E---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEE----E---
Confidence 345688888888888776642 12345678999999999999999999986422 221 1
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCC
Q 047481 207 PGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTC 252 (279)
Q Consensus 207 ~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 252 (279)
+...+. ....+. ........+.......+.+|+||+++.
T Consensus 81 --~~~~l~----~~~~g~-~~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 81 --KGPELL----TMWFGE-SEANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp --CHHHHH----HHHHTT-CTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred --EhHHHH----hhhcCc-hHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 111222 222222 111222333333346789999999975
No 50
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.25 E-value=3.9e-06 Score=73.86 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 138 NKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-..+.|.+..++.|.+.+.. .....+.|.++|++|+|||+||+.+++..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 335677888777777665421 11234678899999999999999999986
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=9.1e-06 Score=72.30 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=39.6
Q ss_pred CCCccccchhhHHHHH---hhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 139 KNPLVGVESRVEEIES---LLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~---~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...++|++..++.+.. .+..+....+.+.|+|++|+|||+||+.+++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5679999988776444 444333334688999999999999999999998643
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.22 E-value=5.6e-07 Score=76.76 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=40.1
Q ss_pred CCCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.....++|.+..++.+.+++.. +......+.|+|++|+|||+||+.+++.....
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4456799999988888776541 11122347799999999999999999987544
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.21 E-value=3e-06 Score=76.44 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCCCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..++.|..++.. .....+.+.|+|++|+|||+||+.+++...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4456789999999999887722 112246789999999999999999988854
No 54
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=2.5e-06 Score=78.51 Aligned_cols=104 Identities=19% Similarity=0.377 Sum_probs=62.5
Q ss_pred CCCCCccccchhh---HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHH
Q 047481 137 SNKNPLVGVESRV---EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCL 213 (279)
Q Consensus 137 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 213 (279)
.....++|.+..+ ..+...+..+ ....+.|||++|+||||||+.+++.....|. .+. .. ..+...+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~---a~---~~~~~~i 91 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS---AV---TSGVKEI 91 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE---TT---TCCHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE---ec---cCCHHHH
Confidence 4446799999888 6777777643 3468899999999999999999998754321 111 01 2233332
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCC
Q 047481 214 QQKLLSKLLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHD 264 (279)
Q Consensus 214 ~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~ 264 (279)
...+ .. .......+++.+|+||+++.. .+.+.|+..+.
T Consensus 92 r~~~-~~------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le 131 (447)
T 3pvs_A 92 REAI-ER------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE 131 (447)
T ss_dssp HHHH-HH------------HHHHHHTTCCEEEEEETTTCC------CCHHHHH
T ss_pred HHHH-HH------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh
Confidence 2211 11 111122567899999999764 34455555443
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.12 E-value=6.8e-06 Score=81.56 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=41.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++++||+.++..+...|.... .+.+.++|++|+|||+||+.++..+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445679999999999999886532 335678999999999999999998743
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.12 E-value=1.2e-05 Score=74.41 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=42.0
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++++|++..++.+...|.... ...+.|+|++|+|||+||+.++..+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 445679999999999999986532 235679999999999999999999754
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.11 E-value=1e-06 Score=68.17 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 141 PLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.++|.+..++++.+.+..-......|.|+|.+|+|||+||+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57899999888888775411222357799999999999999987654
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.09 E-value=1.1e-06 Score=86.98 Aligned_cols=61 Identities=23% Similarity=0.366 Sum_probs=54.7
Q ss_pred CCCCceeEEEeccccccccCch-HHHHHHHhh-----CCCceeecC-cccCCccchHHHHHHHHHhHHHH
Q 047481 12 PRNHKYDVFLSFRGEDTRDNFT-SHLYSALSQ-----KGIEAFIDD-QLNRGDEISQSLLDAIEASAISR 74 (279)
Q Consensus 12 ~~~~~ydVFisf~g~d~~~~f~-~~L~~~L~~-----~gi~~f~D~-~l~~g~~i~~~l~~ai~~s~~~i 74 (279)
....+|||||||+++|. .|+ .+|...|+. +|+++|+++ ++.+|+.+.+++.+||++|+..|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i 733 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIV 733 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEE
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEE
Confidence 34679999999999994 687 679999984 689999999 99999999999999999999888
No 59
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.07 E-value=5.1e-06 Score=73.16 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=42.9
Q ss_pred CCCCCccccchhhHHHHHhhccC---CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.....++|++..++++..++... ......+.|+|++|+|||+||+.+++.....
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34467999999999999888642 3345578899999999999999998886443
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=1.1e-05 Score=68.19 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCCCccccchhhHHHHHhhcc---C-------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---E-------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....++|.+..++++.+++.. . .....-+.|+|++|+||||||+.+++....
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 3445678888777766554321 0 112345889999999999999999988643
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.07 E-value=1.5e-05 Score=77.95 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=41.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+++||+..++.+.+.|... ....+.|+|++|+|||+||+.++..+.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 34467999999999999998754 234567999999999999999999864
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.05 E-value=6.3e-06 Score=71.54 Aligned_cols=50 Identities=16% Similarity=0.367 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 141 PLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.++|.+..++.+...+... ......+.++|++|+|||+||+.++..+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4678888877777766432 1224589999999999999999999987543
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.98 E-value=2.4e-05 Score=67.85 Aligned_cols=28 Identities=36% Similarity=0.654 Sum_probs=24.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+.++|++|+|||+||+.+++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578899999999999999999998443
No 64
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.5e-05 Score=68.80 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=39.1
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.|.+...++|.+.+.. +-...+-|.++|+||+|||.||+++++.....
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 4567888888888775432 22345678899999999999999999987654
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.92 E-value=6.5e-06 Score=64.17 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=28.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
....++|+|++|+|||||++.++..+...-...+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3458999999999999999999998765311245554
No 66
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=3.3e-05 Score=68.17 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=38.9
Q ss_pred CCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 139 KNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.++..+..
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345788888888888888754 2333889999999999999999998653
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.91 E-value=3.9e-05 Score=75.08 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=41.9
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++++|++..++++...|.... ..-+.++|++|+|||++|+.+++.+..
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 344679999999999999986532 334779999999999999999998743
No 68
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.88 E-value=4.3e-05 Score=71.01 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=39.2
Q ss_pred CCccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 140 NPLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..++|.+..+++|.+++... ......|.|+|++|+|||+||+.+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 45899999999998877532 2345578899999999999999998876
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.88 E-value=1e-05 Score=70.59 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=38.1
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..++|....+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3588999999998887755222334677999999999999999998653
No 70
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=0.00012 Score=63.72 Aligned_cols=116 Identities=9% Similarity=0.119 Sum_probs=67.0
Q ss_pred ccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh---cCCCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 144 GVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS---SNFEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 144 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
|-+..++.+...+..+. .+...++|++|+||||+|+.+++... ........+.. ... ..++..+. ++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~---~~~-~~~id~ir-~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP---EGE-NIGIDDIR-TIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC---SSS-CBCHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC---CcC-CCCHHHHH-HHHHH
Confidence 44556677777776543 67889999999999999999988632 11233333431 001 22333322 23322
Q ss_pred HhcCCCchhhHHHHHHHhCCCcEEEEEeCCCCh--HHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 221 LLQDHNVIPDIALSFRRLSSRKFLIVLDDVTCF--KQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 221 l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
+.... ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|.+
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 22110 1245778899999753 4456666655544568888887743
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=8.4e-05 Score=68.71 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCCccccchhhHHHHHhhcc----------CCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 139 KNPLVGVESRVEEIESLLGA----------ESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++|.+..++++.+++.. +....+-|.|+|++|+|||+||+.++.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34578888777666665421 0112334889999999999999999998643
No 72
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.83 E-value=4.4e-05 Score=62.52 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.|..++..+-..-.++.|+|.+|+||||||..++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444432223345899999999999999999988 2 223456664
No 73
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00012 Score=66.93 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=39.3
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.|.+..+++|.+.+.. +-...+-|.++|+||+|||+||+++++.....
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4567888888887775532 22346788899999999999999999987543
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.69 E-value=0.00041 Score=61.06 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=30.4
Q ss_pred hhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 147 SRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 147 ~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++.+...+..+ .-...+.++|++|+|||++|+.++..+..
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3445555555432 22457889999999999999999998754
No 75
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.68 E-value=8.6e-05 Score=61.16 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.+..++..+-..-.+++|.|++|+|||||++.++......-..++|+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444444322122358999999999999999999976543323344443
No 76
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=3.7e-05 Score=70.38 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=39.6
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.|.+...++|.+.+.. +-...+-|.++|+||+|||+||+++++.....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4578888888888775421 22456788899999999999999999987654
No 77
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.67 E-value=9.6e-05 Score=64.49 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=34.1
Q ss_pred hHHHHHhhccCCC-CeEEEEEeecccchHHHHHHHHHHHhh-cCCCceEEEe
Q 047481 149 VEEIESLLGAESK-DVYALGIWGIGGIGKTTIARAIFNNIS-SNFEGSCFLQ 198 (279)
Q Consensus 149 ~~~l~~~L~~~~~-~~~~i~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 198 (279)
++.+..++....+ ....+.|+|++|+|||+||..+++.+. ..-..+.++.
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3444555553221 246788999999999999999999876 5443444554
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.63 E-value=0.00012 Score=67.28 Aligned_cols=52 Identities=29% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCccccchhhHHHHHhh---ccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 139 KNPLVGVESRVEEIESLL---GAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L---~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...++|.+..++.+..++ ..+....+-+.++|++|+|||+||+.+++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 467999998877655544 3333334568899999999999999999997643
No 79
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00014 Score=66.30 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.|.+...++|.+.+.. +-...+-|.++|+||+|||.||+++++.....
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4567888888887765321 22346788899999999999999999987543
No 80
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.61 E-value=0.00079 Score=59.85 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=59.2
Q ss_pred cchhhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhc
Q 047481 145 VESRVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ 223 (279)
Q Consensus 145 r~~~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 223 (279)
...-...|...|. .+-..-.++.|+|++|+||||||.+++..+...-..++|+..- . ..... .+..+..
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E----~-s~~~~-----ra~rlgv 111 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE----H-ALDPV-----YAKNLGV 111 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----C-CCCHH-----HHHHHTC
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc----c-ccchH-----HHHHcCC
Confidence 3344566777776 4434467999999999999999999998876543446677521 1 22222 2223321
Q ss_pred C---------CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 224 D---------HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 224 ~---------~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
. .+.++....+...++ .+.-++|+|.+.
T Consensus 112 ~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 112 DLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred chhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 1 333444455554443 566789999883
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=3.7e-05 Score=70.06 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=39.1
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+.|.+...++|.+.+.. +-...+-|.++|+||+|||+||+++++.....
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567888888887775532 22346678899999999999999999987543
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.56 E-value=0.00019 Score=70.63 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=40.4
Q ss_pred CCCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 139 KNPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.++..+..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35689999999998887753 2234557999999999999999999887643
No 83
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.54 E-value=0.00035 Score=57.46 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=28.0
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+..+|..+-..-.+++|+|++|+|||||++.++....
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44444533333456999999999999999999988643
No 84
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.53 E-value=0.0003 Score=65.44 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=36.9
Q ss_pred CCCCCccccchhhHHHHHhhcc---C-------CCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGA---E-------SKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..+.++.++... . ..-..-+.|+|++|+||||||+.++....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456788888877766655421 1 01122389999999999999999998864
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.51 E-value=9.7e-05 Score=64.63 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=42.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
.+++.|+|++|+|||+||.+++.. ... .+.|+.. + ..+ ..+. .. .+.+.....+.+.+...+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~G~-~VlyIs~-~-~eE-~v~~-----------~~-~~le~~l~~i~~~l~~~~ 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--LGG-KDKYATV-R-FGE-PLSG-----------YN-TDFNVFVDDIARAMLQHR 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--HHT-TSCCEEE-E-BSC-SSTT-----------CB-CCHHHHHHHHHHHHHHCS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--CCC-CEEEEEe-c-chh-hhhh-----------hh-cCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999887 112 3445542 0 011 1000 00 233344444555565555
Q ss_pred EEEEEeCCCC
Q 047481 243 FLIVLDDVTC 252 (279)
Q Consensus 243 ~LlVlDdv~~ 252 (279)
+||+|++..
T Consensus 185 -LLVIDsI~a 193 (331)
T 2vhj_A 185 -VIVIDSLKN 193 (331)
T ss_dssp -EEEEECCTT
T ss_pred -EEEEecccc
Confidence 999999953
No 86
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00027 Score=64.12 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+-|.+...++|.+.+.. +-...+-|.++|+||+|||.||+++++.....
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 3566888888887775432 22345678999999999999999999997654
No 87
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.00028 Score=69.02 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=42.2
Q ss_pred CCccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 140 NPLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++.....-...+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 45889999888887776531 12244799999999999999999999875433333344
No 88
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.46 E-value=4.3e-05 Score=74.77 Aligned_cols=50 Identities=26% Similarity=0.423 Sum_probs=38.0
Q ss_pred CCccccchhhHHHHHhhcc-----------CCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLGA-----------ESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+.|.+..+++|.+++.. +-...+-|.++|++|+|||+||+.+++....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467888888888776432 1234677899999999999999999987643
No 89
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.45 E-value=0.001 Score=58.07 Aligned_cols=53 Identities=23% Similarity=0.125 Sum_probs=35.9
Q ss_pred cchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 145 VESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 145 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...-+..|..++ .+-..-.++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 51 i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 51 VPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp BCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 333444455555 33334458899999999999999999987654435566664
No 90
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=0.00043 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 91
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.39 E-value=0.0019 Score=57.19 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=57.8
Q ss_pred ccchhhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHh
Q 047481 144 GVESRVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLL 222 (279)
Q Consensus 144 Gr~~~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 222 (279)
+...-...|..+|. .+-..-.++.|+|.+|+||||||.+++......-..++|+..- . ..... .+..+.
T Consensus 41 ~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E----~-~~~~~-----~a~~lG 110 (349)
T 2zr9_A 41 VIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE----H-ALDPE-----YAKKLG 110 (349)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----C-CCCHH-----HHHHTT
T ss_pred ccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC----C-CcCHH-----HHHHcC
Confidence 33444556666676 3333456899999999999999999998766544456677521 1 22221 122222
Q ss_pred cC---------CCchhhHHHHHHHhC-CCcEEEEEeCC
Q 047481 223 QD---------HNVIPDIALSFRRLS-SRKFLIVLDDV 250 (279)
Q Consensus 223 ~~---------~~~~~~~~~l~~~l~-~k~~LlVlDdv 250 (279)
.. .+.++....+....+ .+.-+||+|.+
T Consensus 111 ~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 111 VDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSV 148 (349)
T ss_dssp CCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECG
T ss_pred CCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 11 223334444444443 45779999988
No 92
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.38 E-value=7e-05 Score=66.73 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=63.9
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCc-eEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEG-SCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRK 242 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 242 (279)
.+++|+|+.|.|||||.+.+...+...... .+.+.+..+... .... . ...+.....+.......+...|+..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~~~~-~----~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-ESKK-C----LVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSS-S----EEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-hccc-c----ceeeeeeccccCCHHHHHHHHhhhCc
Confidence 499999999999999999998877554333 333332211111 0000 0 00000000122234567888999999
Q ss_pred EEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 243 FLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 243 ~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
=+|++|+..+.+.++.+.... ..|.-||+||.+
T Consensus 198 dvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~ 230 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTAA---ETGHLVFGTLHT 230 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESC
T ss_pred CEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEcc
Confidence 999999998877766655442 236668888754
No 93
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.36 E-value=0.00014 Score=61.66 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..++|.+..+.++.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4588999988888776643222234677999999999999999998754
No 94
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.36 E-value=0.0069 Score=52.62 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|+|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887654
No 95
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.36 E-value=0.00045 Score=59.01 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=36.0
Q ss_pred CCCCCccccchhhHHHHHhhccC-C---------CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAE-S---------KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~-~---------~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+....++.++...- . .-..-+.|+|++|+||||||+.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 44456788887776666544210 0 1112388999999999999999998864
No 96
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.35 E-value=0.0011 Score=57.75 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=53.2
Q ss_pred HHHHHhhc----cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC--CceEEEeecccccCCCCCHHHHHHHHHHHHhc
Q 047481 150 EEIESLLG----AESKDVYALGIWGIGGIGKTTIARAIFNNISSNF--EGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ 223 (279)
Q Consensus 150 ~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 223 (279)
..|...|. .+-..- ++-|+|++|+||||||.+++......+ ..++|+..- . ..... .+.+++.
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E----~-s~~~~-----ra~~lGv 80 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE----F-GITPA-----YLRSMGV 80 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS----C-CCCHH-----HHHHTTC
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc----c-hhhHH-----HHHHhCC
Confidence 44555565 332223 789999999999999999988866543 346676521 1 22222 2344432
Q ss_pred C---------CCchhh-HHHHHHH--h-CCCcEEEEEeCCC
Q 047481 224 D---------HNVIPD-IALSFRR--L-SSRKFLIVLDDVT 251 (279)
Q Consensus 224 ~---------~~~~~~-~~~l~~~--l-~~k~~LlVlDdv~ 251 (279)
. .+.++. ...+... + .++.-|||+|-|-
T Consensus 81 d~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 81 DPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp CGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECST
T ss_pred CHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEeccc
Confidence 2 233333 3333332 3 4578999999983
No 97
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.35 E-value=8.6e-05 Score=64.06 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHhhcc------------CCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 141 PLVGVESRVEEIESLLGA------------ESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~------------~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.++|.+..++.+...+.. .......+.++|++|+|||+||+.+++.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888888877776643 012244678999999999999999999874
No 98
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.35 E-value=0.00075 Score=54.74 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=59.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHh---cC--CC----------ch
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLL---QD--HN----------VI 228 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~---~~--~~----------~~ 228 (279)
..|.|++-.|.||||+|-.++-+...+=..++++.-+... . ..+...+.+.+.-.+. .. .+ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4677777778999999999998866553344444311110 1 2233333333210000 00 00 11
Q ss_pred hhHHHHHHHhC-CCcEEEEEeCCCC--------hHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 229 PDIALSFRRLS-SRKFLIVLDDVTC--------FKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 229 ~~~~~l~~~l~-~k~~LlVlDdv~~--------~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.....+++.+. ++-=|||||++.. .+.+-.++..- -....||||+|+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~ 162 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCC
Confidence 22344555665 4566999999932 23333333332 257789999996
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.34 E-value=0.00016 Score=60.02 Aligned_cols=104 Identities=11% Similarity=-0.037 Sum_probs=56.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC------CCchhhHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD------HNVIPDIALSFR 236 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~------~~~~~~~~~l~~ 236 (279)
-.++.|+|.+|+||||++..++.+...+-..++++....+ . . +. .++++.++.. .........+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d--~-r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID--T-R-SI----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--G-G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC--c-h-HH----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 4688899999999999999999987655433444421110 0 0 00 0111222111 122233333444
Q ss_pred HhCCC-cEEEEEeCCCC--hHHHHHHhhcCCCCCCCeEEEEEec
Q 047481 237 RLSSR-KFLIVLDDVTC--FKQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 237 ~l~~k-~~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
.+.+. .-+||+|.+.. .++++.+....+ .|-.||+|-+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEec
Confidence 34333 45999999953 345544433222 2677888876
No 100
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.33 E-value=0.00034 Score=69.38 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 141 PLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.++|.+..++.+...+... ......+.|+|++|+|||+||+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4689998888887766431 123468899999999999999999998754
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.32 E-value=0.00038 Score=57.98 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=25.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh-cCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS-SNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 198 (279)
-.+++|.|++|.|||||++.++.... ..-...+++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45899999999999999999985432 2233444443
No 102
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.30 E-value=0.00011 Score=64.76 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCccccchhhHHHHHhhccC---CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLGAE---SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++|.+..++.+...+..+ ......++++|++|+||||||+.++..+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45788887777777666532 233457899999999999999999998754
No 103
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.28 E-value=0.011 Score=53.81 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=25.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999887654
No 104
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.26 E-value=0.00029 Score=66.25 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=34.0
Q ss_pred ccccchhhHHHHHhhcc----CCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 142 LVGVESRVEEIESLLGA----ESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+|.+.-...+.+.+.. .......+.++|++|+||||||+.++.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57777666555443321 1123558999999999999999999998744
No 105
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.25 E-value=0.0018 Score=57.18 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=44.3
Q ss_pred ccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 142 LVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
..|...-...|..++. +-....++.|.|.+|+||||||..++..+..+=..++|+. - +-....+...++..
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------l-Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------L-EMSAEQLALRALSD 96 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------S-SSCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------C-CCCHHHHHHHHHHH
Confidence 3444444455555553 2233458889999999999999999988665333445554 1 34455666666543
No 106
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.25 E-value=0.00095 Score=65.19 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCccccchhhHHHHHhhccC-------CCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 140 NPLVGVESRVEEIESLLGAE-------SKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45788888888777766431 1234578999999999999999999987
No 107
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.23 E-value=0.0048 Score=55.01 Aligned_cols=98 Identities=18% Similarity=0.097 Sum_probs=58.9
Q ss_pred cccchhhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHH
Q 047481 143 VGVESRVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKL 221 (279)
Q Consensus 143 vGr~~~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 221 (279)
.+...-...|..+|. .+-..-.++.|+|.+|+||||||..++......-..++|+..- . ..... .+..+
T Consensus 53 ~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E----~-s~~~~-----~a~~~ 122 (366)
T 1xp8_A 53 QVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE----H-ALDPV-----YARAL 122 (366)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----C-CCCHH-----HHHHT
T ss_pred ceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC----C-ChhHH-----HHHHc
Confidence 344445566777775 3323345888999999999999999998865544466777621 1 22221 12222
Q ss_pred hcC---------CCchhhHHHHHHHhC-CCcEEEEEeCC
Q 047481 222 LQD---------HNVIPDIALSFRRLS-SRKFLIVLDDV 250 (279)
Q Consensus 222 ~~~---------~~~~~~~~~l~~~l~-~k~~LlVlDdv 250 (279)
... .+.+.....+....+ ...-+||+|.+
T Consensus 123 g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 123 GVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp TCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred CCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 211 233444555555554 45679999998
No 108
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.22 E-value=0.0027 Score=56.43 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=39.9
Q ss_pred cccchhhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 143 VGVESRVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 143 vGr~~~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
.+...-...|..+|. .+-..-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 42 ~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 42 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344445556666675 33334558999999999999999999988665544577776
No 109
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.21 E-value=7.1e-05 Score=63.78 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=60.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeec--ccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNV--REESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLS 239 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~ 239 (279)
.-.+++|+|+.|.|||||++.+...+...+.+.+++... ....+....+ ..+-.-..+.......+.+.|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~-------v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI-------VNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE-------EEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee-------eeHHHhCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988765544455544321 1011100000 0000000011223455666676
Q ss_pred CCcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 240 SRKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 240 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
..+=+|++|+..+.+....++... ..|.-|++||.+
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~ 132 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHT 132 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECC
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCc
Confidence 677788899997666555444332 236667777753
No 110
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.21 E-value=0.00079 Score=55.78 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=33.3
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc------CCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS------NFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 198 (279)
..|..+|..+-..-.+++|+|++|+|||||++.++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3455555433233458999999999999999999986432 124566665
No 111
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.20 E-value=0.0019 Score=57.06 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc------CCCceEEEe
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS------NFEGSCFLQ 198 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 198 (279)
..|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455556544445679999999999999999999987432 123566775
No 112
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00027 Score=62.82 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHhhc-------------cCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 142 LVGVESRVEEIESLLG-------------AESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~-------------~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
++|.+..++.+...+. ........+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4666666666655551 1111345688999999999999999998863
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.14 E-value=0.00047 Score=56.30 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....+|+|.|++|.|||||++.+...+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999988753
No 114
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.14 E-value=0.00018 Score=56.89 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|.|.|++|+||||+|+.+..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788999999999999999998764
No 115
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.00097 Score=57.03 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.8
Q ss_pred EEEeecccchHHHHHHHHHHHhhc
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
++++|++|+||||||+.++.....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 899999999999999999987643
No 116
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.12 E-value=0.00022 Score=62.50 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=37.9
Q ss_pred CCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..++|++..++.+...+..+. .+.++|++|+|||+||+.+++.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 468999998888887776432 5889999999999999999988644
No 117
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.12 E-value=0.0033 Score=57.63 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred ccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 144 GVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 144 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
|...-+..|..++ .+-....++.|.|.+|+||||||..++..+... -..++|+.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3333344455554 222334589999999999999999999887543 22455554
No 118
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.10 E-value=0.0062 Score=53.43 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.6
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
....+++|+|+.|+|||||++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999999876543
No 119
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.07 E-value=0.00095 Score=54.68 Aligned_cols=88 Identities=22% Similarity=0.196 Sum_probs=45.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEEee---cccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQN---VREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSR 241 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 241 (279)
+|.|.|+||+||+|+|+.++.++. ...+.. +++.-.....+....+..+.. +..-..+.....+.+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~-G~lvpd~iv~~lv~~~l~~~ 75 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMER-GELVPDDLIIALIEEVFPKH 75 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhc-CCcCCHHHHHHHHHHhhccC
Confidence 577899999999999999998752 122320 000000000111111111111 11122334456777777655
Q ss_pred cEEEEEeCCC-ChHHHHHH
Q 047481 242 KFLIVLDDVT-CFKQIKSL 259 (279)
Q Consensus 242 ~~LlVlDdv~-~~~~~~~l 259 (279)
.. +|||... ...|.+.|
T Consensus 76 ~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 76 GN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp SC-EEEESCCCSHHHHHHH
T ss_pred Cc-eEecCCchhHHHHHHH
Confidence 44 6889984 45565544
No 120
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.06 E-value=0.0003 Score=55.12 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.8
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|.|.|++|+||||+|+.+..++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999988753
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.05 E-value=0.00089 Score=54.31 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=31.7
Q ss_pred chhhHHHHHhhcc-CCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 146 ESRVEEIESLLGA-ESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 146 ~~~~~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
+..++.+.+.+.. ......+|+|.|++|+|||||++.+...+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445555554432 2334679999999999999999999887643
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.03 E-value=0.0024 Score=55.93 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC------CCceEEEeecccccCCCCCHHHHHHHHHHHHhc
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN------FEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ 223 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 223 (279)
..|..+|..+-..-.++.|+|.+|+||||||..++...... -..++|+. ... .+....+... +..+..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~----~e~-~~~~~~l~~~-~~~~g~ 167 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID----TEG-TFRWERIENM-AKALGL 167 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE----SSS-CCCHHHHHHH-HHHTTC
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE----CCC-CCCHHHHHHH-HHHhCC
Confidence 34445554322334589999999999999999999875432 23456665 111 2234444332 222211
Q ss_pred C-------------CCchh---hHHHHHHHhC--CCcEEEEEeCCC
Q 047481 224 D-------------HNVIP---DIALSFRRLS--SRKFLIVLDDVT 251 (279)
Q Consensus 224 ~-------------~~~~~---~~~~l~~~l~--~k~~LlVlDdv~ 251 (279)
. .+.+. ....+...++ .+.-+||+|.+.
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 168 DIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred CHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 0 12221 2334444553 567899999994
No 123
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.02 E-value=0.0014 Score=60.16 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=25.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCC-ceEEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFE-GSCFL 197 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 197 (279)
.++|+|.+|+|||||+..+......++. .+++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 6889999999999999999988665443 34443
No 124
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.98 E-value=0.0041 Score=51.29 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...++|.|.|+||+||+|+|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999875
No 125
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.97 E-value=0.00036 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..|.|+|++|+||||+|+.++..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998763
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.00041 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...|.|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998863
No 127
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.96 E-value=0.031 Score=50.90 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=25.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999887665
No 128
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.94 E-value=0.00089 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..|.|.|++|+||||+|+.+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.94 E-value=0.00047 Score=57.93 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=33.9
Q ss_pred CCCCccccchhhHHHHHhhcc--C--------CCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 138 NKNPLVGVESRVEEIESLLGA--E--------SKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 138 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....++|.+....++.++... . -.-.+-+.|+|++|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 334577777666555544321 0 01112389999999999999999998864
No 130
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.93 E-value=0.004 Score=53.07 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
-.++.|+|++|+|||||+..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 348999999999999999999876543
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.93 E-value=0.00093 Score=57.70 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.....+|+|.|.+|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999999887654
No 132
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.92 E-value=0.0067 Score=53.03 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|+|+|.+|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999877654
No 133
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.89 E-value=0.00048 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+.|+|.|++|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998864
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.88 E-value=0.0011 Score=53.66 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+|.|.|++|.|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999999875
No 135
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00059 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEEeecccchHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00085 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|.|++|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999876
No 137
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.0049 Score=56.35 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=36.2
Q ss_pred cccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 143 VGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 143 vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
.|...-+..|..++ .+-....++.|.|.+|+||||||..++..+... -..++|+.
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444445555555 333345588999999999999999999887643 23455554
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.81 E-value=0.00068 Score=54.15 Aligned_cols=24 Identities=42% Similarity=0.355 Sum_probs=21.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..+++|+|++|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999775
No 139
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.80 E-value=0.0041 Score=54.22 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|..+|..+-..-.++.|+|.+|+|||+||.+++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554333345689999999999999999998764
No 140
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.79 E-value=0.00054 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988754
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.79 E-value=0.0041 Score=56.62 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=25.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|.++|.+|+||||++..++..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999887654
No 142
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.78 E-value=0.00072 Score=59.91 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred chhhHHHHHhhcc--CCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 146 ESRVEEIESLLGA--ESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 146 ~~~~~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
+.-.+.+...+.. ..+....|.|+|++|.|||||++.++..+...|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3344444444432 233466789999999999999999998765444
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.77 E-value=0.0068 Score=54.67 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=32.9
Q ss_pred hHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc------CCCceEEEe
Q 047481 149 VEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS------NFEGSCFLQ 198 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 198 (279)
+..|..+|..+-..-.++.|+|++|+|||||+..++-.... .-..++|+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 34455566433334458999999999999999988754322 123466665
No 144
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00076 Score=53.67 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..|.|.|++|+||||+|+.+...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 145
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.75 E-value=0.00091 Score=59.66 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+.++|++|+|||+||+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998873
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.73 E-value=0.0032 Score=55.33 Aligned_cols=101 Identities=17% Similarity=0.054 Sum_probs=58.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCCCcEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSSRKFL 244 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~L 244 (279)
.++|+|+.|.|||||++.+...+.. -...+.+.+..+... .. ... .+ .+.. ..-......+...|..++=+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~-~~-~~~---~i--~~~~-ggg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF-KH-HKN---YT--QLFF-GGNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC-SS-CSS---EE--EEEC-BTTBCHHHHHHHHTTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc-cc-chh---EE--EEEe-CCChhHHHHHHHHhhhCCCE
Confidence 7999999999999999999877543 356666664432211 00 000 00 0000 01223456677788888889
Q ss_pred EEEeCCCChHHHHHHhhcCCCCCCCeEEEEEec
Q 047481 245 IVLDDVTCFKQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 245 lVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
|+||++...+.++.+.. +. ..+.-+|+||.
T Consensus 244 lildE~~~~e~~~~l~~-~~--~g~~tvi~t~H 273 (330)
T 2pt7_A 244 IILGELRSSEAYDFYNV-LC--SGHKGTLTTLH 273 (330)
T ss_dssp EEECCCCSTHHHHHHHH-HH--TTCCCEEEEEE
T ss_pred EEEcCCChHHHHHHHHH-Hh--cCCCEEEEEEc
Confidence 99999987554444432 22 11223566654
No 147
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.73 E-value=0.0011 Score=55.49 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.....|+|.|++|+||||+|+.+..++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998875
No 148
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.73 E-value=0.0062 Score=54.38 Aligned_cols=107 Identities=10% Similarity=0.057 Sum_probs=61.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceE-EEeecccccCCCCCHHHHHHHHHHHHhcCCCchhhHHHHHHHhCC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSC-FLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIPDIALSFRRLSS 240 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 240 (279)
...+++|+|+.|.|||||++.+...+.......+ ++.+..+... ..... +..+..-..+.......+...|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~~~-----~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKKS-----IVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCSSS-----EEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccCce-----EEEeeecCCCHHHHHHHHHHHhhh
Confidence 3568999999999999999999987755434444 3331111000 00000 000000001222335677888888
Q ss_pred CcEEEEEeCCCChHHHHHHhhcCCCCCCCeEEEEEec
Q 047481 241 RKFLIVLDDVTCFKQIKSLIRSHDWYMAESRIIITTR 277 (279)
Q Consensus 241 k~~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR 277 (279)
.+=+|++|++.+.+.+...+... ..|.-||.|+.
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H 242 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLH 242 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCC
T ss_pred CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEEC
Confidence 88899999998776665544332 23666777664
No 149
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.73 E-value=0.011 Score=51.08 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..+++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5689999999999999999999887554
No 150
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.73 E-value=0.00062 Score=60.98 Aligned_cols=28 Identities=25% Similarity=0.076 Sum_probs=24.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
-+.++|+|.+|+|||||++.+.+.+..+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4589999999999999999999886543
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.73 E-value=0.00051 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...|.|+|++|+||||+|+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999875
No 152
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.72 E-value=0.0016 Score=51.91 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+|.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999998754
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.72 E-value=0.0012 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|+|++|.|||||++.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 154
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.71 E-value=0.0007 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|.|++|+||||||+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999886
No 155
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.70 E-value=0.0007 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.|.|++|+||||+|+.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 156
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.69 E-value=0.00061 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 157
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.69 E-value=0.00049 Score=55.49 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=23.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
+.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999988754444
No 158
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.69 E-value=0.00093 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.0
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998864
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00099 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|.|+|++|+||||||+.++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 160
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.0011 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.9
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|+|.|++|+||||+|+.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 161
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.67 E-value=0.00094 Score=58.58 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCCCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 137 SNKNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 137 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....++|.+..+..+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 33456899987555543333211 122488999999999999999999764
No 162
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0018 Score=52.39 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
..|.|.|++|+||||+|+.+...+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5789999999999999999999876543
No 163
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.66 E-value=0.0011 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 164
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.65 E-value=0.0017 Score=52.68 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=24.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...|+|.|++|+||||+|+.+...+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987644
No 165
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0014 Score=54.35 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=27.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999998877654434556664
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.0012 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...|+|.|++|+||||+|+.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998875
No 167
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.001 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999988754
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|+|.|++|+||||+|+.+...+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998864
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.61 E-value=0.0011 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|.|++|.|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998876
No 170
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.61 E-value=0.00099 Score=61.93 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 141 PLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.++|.+..++.+...+..+. .|.++|++|+|||+||+.+++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHh
Confidence 57899998888877766442 688999999999999999988763
No 171
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.60 E-value=0.00079 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=18.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|.|.|++|+||||+|+.+...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999988754
No 172
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999887
No 173
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.58 E-value=0.0015 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|+|.|++|+||||+|+.++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998774
No 174
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.58 E-value=0.0014 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|+|.|++|+||||+|+.+...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988753
No 175
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.57 E-value=0.0013 Score=55.25 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988754
No 176
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.57 E-value=0.002 Score=52.59 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
-+..+..++.. -+....+.|+|++|+||||+|..+++.+..
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35556666653 222346899999999999999999998743
No 177
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.57 E-value=0.0091 Score=55.75 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=32.3
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
..+...|..+-..-.+++|.|.+|+|||||++.++......-..++++
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 344445543223345899999999999999999998765542223454
No 178
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.56 E-value=0.0012 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+|+|+|++|+|||||++.+...+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 458999999999999999999887643
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.56 E-value=0.0013 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+|+|+|++|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 180
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.56 E-value=0.0013 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.7
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|+|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 181
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.55 E-value=0.0014 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
+...+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 182
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.54 E-value=0.0022 Score=50.76 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 197 (279)
..+++|.|..|+|||||+..+...+..+ +...++-
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 5689999999999999999999987654 5544443
No 183
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.54 E-value=0.0013 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...|.|.|++|+||||+|+.+...+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44799999999999999999998763
No 184
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.54 E-value=0.001 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|.|+|++|+|||||++.+...+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999988763
No 185
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.54 E-value=0.0014 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEeecccchHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.+++|.|++|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.52 E-value=0.0022 Score=55.16 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|.|++|+||||||+.+..++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998875
No 187
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.52 E-value=0.0014 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.|+|.|++|+||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998743
No 188
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.52 E-value=0.0012 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|.|.|++|+||||+|+.+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998763
No 189
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.51 E-value=0.0014 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999998763
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.51 E-value=0.0014 Score=53.03 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEeecccchHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.|+|.|++|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 191
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.50 E-value=0.00099 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.2
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
++++|.|+.|.|||||++.+...+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 478999999999999999999876533
No 192
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.49 E-value=0.0052 Score=56.39 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=52.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEeecccccCCCCCHHHHHHHHHHHH-hc------C-------CCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQNVREESQRPGGLGCLQQKLLSKL-LQ------D-------HNV 227 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~------~-------~~~ 227 (279)
-+-++|.|.+|+|||+|+..+.+.+... -+.++|+. + .++......+.+.+...- .. . .|.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-i---GER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-V---GERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-E---SCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-C---CCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence 3478999999999999999999986443 34455543 3 332345556666665431 11 1 121
Q ss_pred hh--------hHHHHHHHh---CCCcEEEEEeCCCC
Q 047481 228 IP--------DIALSFRRL---SSRKFLIVLDDVTC 252 (279)
Q Consensus 228 ~~--------~~~~l~~~l---~~k~~LlVlDdv~~ 252 (279)
.. ..-.+.+++ +++.+||++||+..
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11 112233444 46899999999943
No 193
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.48 E-value=0.002 Score=52.34 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988764
No 194
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.47 E-value=0.0014 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998764
No 195
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.47 E-value=0.0017 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998754
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.46 E-value=0.0025 Score=51.59 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...|+|.|++|+||||+|+.+...+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999986543
No 197
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.46 E-value=0.012 Score=54.27 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=54.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc-CCCceEEEeecccccCCCCCHHHHHHHHHHHHhc--------C-------CC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS-NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQ--------D-------HN 226 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~--------~-------~~ 226 (279)
-+-++|.|.+|+|||+|+..+.+.+.. +-+.++|+. +.++......+.+.+...-.. . .|
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~----iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE----ESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE----cccCcHHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 447899999999999999999998644 345556654 333344566677766643111 1 11
Q ss_pred ch--------hhHHHHHHHhC---CCcEEEEEeCCCC
Q 047481 227 VI--------PDIALSFRRLS---SRKFLIVLDDVTC 252 (279)
Q Consensus 227 ~~--------~~~~~l~~~l~---~k~~LlVlDdv~~ 252 (279)
.. ...-.+.++++ ++.+||++||+..
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11 11233456665 4799999999943
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.43 E-value=0.031 Score=48.23 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+++++|.+|+||||++..++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999988763
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.43 E-value=0.0015 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|+|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3489999999999999999998875
No 200
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.43 E-value=0.0015 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
+|+|.|++|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988653
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.41 E-value=0.0069 Score=64.53 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=56.3
Q ss_pred HHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC----
Q 047481 150 EEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD---- 224 (279)
Q Consensus 150 ~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~---- 224 (279)
..|..+|. .+-...+.|.|+|++|+|||+||.++......+=..+.|+. ... ..+... +..++..
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~-~~~~l~-----a~~~G~dl~~l 1482 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEH-ALDPIY-----ARKLGVDIDNL 1482 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTS-CCCHHH-----HHHTTCCTTTC
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----ccc-ccCHHH-----HHHcCCCchhc
Confidence 34555665 33334568999999999999999999988766655667775 211 222222 3333211
Q ss_pred -----CCchhhHHHHHHHhC-CCcEEEEEeCCC
Q 047481 225 -----HNVIPDIALSFRRLS-SRKFLIVLDDVT 251 (279)
Q Consensus 225 -----~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 251 (279)
...+.....+.+..+ .+.-+||+|.+.
T Consensus 1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 222334444444443 578899999994
No 202
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.40 E-value=0.0018 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|+|++|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999775
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.39 E-value=0.0022 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=23.0
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
....+|+|+|++|.||||||+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999997753
No 204
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0019 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 205
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.38 E-value=0.0061 Score=53.99 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
++...+........+|+|+|.+|+|||||+..+...+..
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444433456789999999999999999999887643
No 206
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.37 E-value=0.002 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 207
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.37 E-value=0.002 Score=58.92 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.6
Q ss_pred CccccchhhHHHHHhhccC------------CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 141 PLVGVESRVEEIESLLGAE------------SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 141 ~~vGr~~~~~~l~~~L~~~------------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.++|.+...+.+...+... ....+-|.++|++|+||||||+.++..+...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3566666555554444210 1123468899999999999999999986443
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.33 E-value=0.0021 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.5
Q ss_pred EEEEeecccchHHHHHHHHHHHhhc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988744
No 209
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0019 Score=52.23 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEeecccchHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.+|+|.|++|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.0021 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|+|.|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998874
No 211
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.32 E-value=0.002 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|.|.|++|+||||+|+.++..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 212
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.31 E-value=0.0016 Score=51.43 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.7
Q ss_pred eEEEEEeecccchHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAI 183 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v 183 (279)
..+++|+|++|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 458999999999999999963
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.31 E-value=0.0027 Score=50.18 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...|+|.|+.|+||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 458899999999999999999987643
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.30 E-value=0.011 Score=54.18 Aligned_cols=54 Identities=24% Similarity=0.152 Sum_probs=35.8
Q ss_pred ccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 144 GVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 144 Gr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
|...-+..|..++. +-....++.|.|.||+||||||..++.....+-..++|+.
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33334444555553 3334458899999999999999999988765433455553
No 215
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.30 E-value=0.002 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 216
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.30 E-value=0.0061 Score=55.61 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=51.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCC----ceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh-
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFE----GSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD- 230 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~- 230 (279)
+-++|.|.+|+|||+|+..+++....+.+ .++|+. ++ ++......+.+.+...-... .+....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iG---eR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IG---ITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EE---ECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ec---CCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 35789999999999999999988654333 334443 33 22345556666654431111 222111
Q ss_pred -------HHHHHHHhC---CCcEEEEEeCCCC
Q 047481 231 -------IALSFRRLS---SRKFLIVLDDVTC 252 (279)
Q Consensus 231 -------~~~l~~~l~---~k~~LlVlDdv~~ 252 (279)
.-.+.++++ ++.+||++||+..
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 123455553 6899999999943
No 217
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.0025 Score=53.67 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|.|.|++|+||||+|+.+...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988754
No 218
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.0037 Score=50.96 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=31.0
Q ss_pred chhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 146 ESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 146 ~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+...+.+...+.. .....|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444445554432 246799999999999999999998876444
No 219
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.23 E-value=0.0092 Score=54.72 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=24.1
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCC
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFE 192 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~ 192 (279)
.+.|.|.+|+||||++..+...+.....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999988765443
No 220
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.23 E-value=0.042 Score=50.86 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=29.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 198 (279)
.-.++.|.|.+|+||||||.+++.....+ =..++|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34588899999999999999999987654 33456664
No 221
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.21 E-value=0.0058 Score=49.95 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=24.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
....|.|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999998875443
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.20 E-value=0.0025 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=22.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|+|.|+.|.|||||++.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998653
No 223
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.20 E-value=0.0026 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=22.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..|.|.|++|+||||+|+.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998864
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.19 E-value=0.0031 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|.|.|++|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998865
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.18 E-value=0.0028 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988753
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.18 E-value=0.016 Score=52.65 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=25.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|+|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999887654
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.17 E-value=0.0016 Score=63.74 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=36.0
Q ss_pred CCccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 140 NPLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+.|.+...++|.+.+... ....+-|.++|++|.|||.||+++++....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 34567777777776654321 123456789999999999999999998643
No 228
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.17 E-value=0.0024 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|.|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999886
No 229
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0023 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=22.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|+|.|++|+||||+++.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998876
No 230
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0023 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+.++|+|+.|.|||||++.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998765
No 231
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0027 Score=52.63 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=26.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh-hcCCCceEEEe
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI-SSNFEGSCFLQ 198 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~ 198 (279)
.-.++.|.|.+|+|||+||.+++.+. ...-..++|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34588899999999999999987653 33334455554
No 232
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.12 E-value=0.021 Score=53.95 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=25.9
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
+++.|.|.+|+||||++..+...+...-..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4788999999999999999998765543333333
No 233
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.12 E-value=0.0044 Score=58.93 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=39.4
Q ss_pred CCCccccchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 139 KNPLVGVESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
...++|.+.-++.+...+..+ ..+.|+|++|+||||||+.++..+....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 345789888888888777644 3789999999999999999999765443
No 234
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.12 E-value=0.0038 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|+|.|+.|.|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 235
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.11 E-value=0.0034 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.0
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.003 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|+|+|++|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999987754
No 237
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.10 E-value=0.0069 Score=51.99 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=27.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCC-ceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFE-GSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~ 198 (279)
-.+++|.|.+|+|||||++.++..+...-. .++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 348999999999999999999988765433 344543
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.09 E-value=0.0022 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=22.0
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|+|+|++|.||||+++.++..+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998754
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.08 E-value=0.0041 Score=54.20 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.0
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....+|+|.|+.|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999887654
No 240
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.07 E-value=0.0051 Score=53.84 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....+|+|.|+.|+||||||+.+...+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44679999999999999999999877653
No 241
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.06 E-value=0.0035 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.1
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.05 E-value=0.006 Score=52.96 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+++|+|++|+|||||++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 35699999999999999999999876543
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.03 E-value=0.0032 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||++.+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3489999999999999999998765
No 244
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.02 E-value=0.004 Score=53.33 Aligned_cols=24 Identities=42% Similarity=0.805 Sum_probs=21.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.01 E-value=0.006 Score=51.83 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 150 EEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 150 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-+..+|....+....|.++|+||+|||.||..+++.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 33566666442335579999999999999999999863
No 246
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.97 E-value=0.0045 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 247
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.97 E-value=0.0041 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..|.|.|++|+||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998864
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.94 E-value=0.0042 Score=54.72 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|+|.|++|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998853
No 249
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.93 E-value=0.0036 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.+++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 479999999999999999999887654
No 250
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.93 E-value=0.0045 Score=56.72 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=50.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCC---CceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh--
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNF---EGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD-- 230 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~-- 230 (279)
+-++|.|.+|+|||+|+..+++....+. +..|.+..+++ +......+.+.+...-... .|....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGE---R~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGI---TNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEE---CHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccC---CcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 4678889999999999999998865432 12333333332 2344566666665432111 222111
Q ss_pred ------HHHHHHHhC---CCcEEEEEeCC
Q 047481 231 ------IALSFRRLS---SRKFLIVLDDV 250 (279)
Q Consensus 231 ------~~~l~~~l~---~k~~LlVlDdv 250 (279)
.-.+.++++ ++.+||++||+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 123445554 69999999997
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.90 E-value=0.0039 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=22.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|.|.|++|.||||||+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999988763
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.88 E-value=0.0034 Score=51.60 Aligned_cols=25 Identities=36% Similarity=0.733 Sum_probs=22.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3489999999999999999998865
No 253
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0082 Score=52.04 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+++|+|+.|+|||||++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987654
No 254
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.85 E-value=0.014 Score=61.41 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=58.7
Q ss_pred cccchhhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHH
Q 047481 143 VGVESRVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKL 221 (279)
Q Consensus 143 vGr~~~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 221 (279)
.+...-..+|..+|. .+-..-.++.|.|.+|+||||||..++......-..++|+. . +.....+. +..+
T Consensus 711 ~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~---Ees~~ql~---A~~l 780 (1706)
T 3cmw_A 711 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----A---EHALDPIY---ARKL 780 (1706)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----T---TSCCCHHH---HHHT
T ss_pred cccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----c---cchHHHHH---HHHc
Confidence 344445566666665 33334558999999999999999999998765444566664 1 11112221 2333
Q ss_pred hc---------CCCchhhHHHHHHHh-CCCcEEEEEeCCC
Q 047481 222 LQ---------DHNVIPDIALSFRRL-SSRKFLIVLDDVT 251 (279)
Q Consensus 222 ~~---------~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 251 (279)
.. ..+.++....+++.. ..+.-+||+|.+.
T Consensus 781 Gvd~~~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 781 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 820 (1706)
T ss_dssp TCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred CCChhheEEecCCcHHHHHHHHHHHHHccCCCEEEEechh
Confidence 21 123334444444433 2567799999994
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.84 E-value=0.0078 Score=46.96 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..-.+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999876
No 256
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.81 E-value=0.0093 Score=51.98 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
++.++|+|.|=|||||||.+-.++--+...-..+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999999999888765533344443
No 257
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.81 E-value=0.0049 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.0
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+|.|+|++|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999875
No 258
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.80 E-value=0.0044 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988763
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.80 E-value=0.0088 Score=47.49 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=25.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCce
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGS 194 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~ 194 (279)
..+++|.|..|+|||||+..+...+... +...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 5689999999999999999999876543 4443
No 260
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.80 E-value=0.23 Score=41.05 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=26.1
Q ss_pred cchhhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 145 VESRVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 145 r~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
++.+.+.+..++... -+.|+|+.|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHHHc
Confidence 334444455555421 27788999999999999888765
No 261
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.0033 Score=54.23 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=20.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+|+|.|..|+||||+|+.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999988754
No 262
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.77 E-value=0.0055 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.76 E-value=0.0047 Score=50.96 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=23.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999988764
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.76 E-value=0.0058 Score=54.10 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=29.0
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.|..+|..+-..-.++.|+|++|+|||||++.++..+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445544334567999999999999999999998763
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.74 E-value=0.007 Score=52.51 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
....+|+|.|+.|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988765
No 266
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.74 E-value=0.028 Score=45.39 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.3
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
.|.|=|.-|+||||.++.+++.+..+-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 477889999999999999999987664444444
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.71 E-value=0.0034 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=16.3
Q ss_pred eEEEEEeecccchHHHHHHHHH-HHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIF-NNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~-~~~ 187 (279)
..+++|+|+.|+|||||++.+. ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 653
No 268
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.69 E-value=0.0077 Score=53.87 Aligned_cols=28 Identities=25% Similarity=0.074 Sum_probs=23.9
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.....++|+|++|.|||||++.++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445699999999999999999999764
No 269
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.67 E-value=0.029 Score=59.87 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=60.7
Q ss_pred ccccchhhHHHHHhhc-cCCCCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHH
Q 047481 142 LVGVESRVEEIESLLG-AESKDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSK 220 (279)
Q Consensus 142 ~vGr~~~~~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 220 (279)
..+...-...|..+|. .+-..-.++.|+|++|+||||||.+++......-..++|+.. .. .... +. +..
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~----E~-s~~~--~~---a~~ 430 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA----EH-ALDP--IY---ARK 430 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT----TS-CCCH--HH---HHH
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc----CC-CHHH--HH---HHH
Confidence 4455556667777776 333345689999999999999999999987665455677751 11 2222 21 233
Q ss_pred HhcC---------CCchhhHHHHHHHh-CCCcEEEEEeCC
Q 047481 221 LLQD---------HNVIPDIALSFRRL-SSRKFLIVLDDV 250 (279)
Q Consensus 221 l~~~---------~~~~~~~~~l~~~l-~~k~~LlVlDdv 250 (279)
+... .+.++....+.... ....-+||+|-+
T Consensus 431 lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred cCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 3211 23344444444433 356779999988
No 270
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.61 E-value=0.014 Score=48.77 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=24.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367888999999999999999998776
No 271
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.60 E-value=0.012 Score=53.70 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=49.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc----------CCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------C
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS----------NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------H 225 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~----------~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~ 225 (279)
+-++|.|.+|+|||+|+..+++.... +=+..|.+..+++ +......+.+.+...-... .
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGe---R~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGI---TQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEE---CHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecC---chHHHHHHHHHhhhcccccceEEEEECC
Confidence 46788999999999999999887543 1122333333332 2334555666554321111 1
Q ss_pred Cch---hh-----HHHHHHHhC---CCcEEEEEeCCCC
Q 047481 226 NVI---PD-----IALSFRRLS---SRKFLIVLDDVTC 252 (279)
Q Consensus 226 ~~~---~~-----~~~l~~~l~---~k~~LlVlDdv~~ 252 (279)
+.. +. .-.+.++++ ++.+||++||+..
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 11 123445553 6899999999943
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.59 E-value=0.012 Score=52.19 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+++|+|+.|+|||||++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3569999999999999999999987654
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0076 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|+|.|++|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998753
No 274
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.56 E-value=0.012 Score=47.05 Aligned_cols=26 Identities=23% Similarity=-0.079 Sum_probs=21.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.++.|+|++|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37789999999999999888777543
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.53 E-value=0.0062 Score=59.94 Aligned_cols=52 Identities=27% Similarity=0.343 Sum_probs=39.2
Q ss_pred CCCccccchhhHHHHHhhccC-----------CCCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 139 KNPLVGVESRVEEIESLLGAE-----------SKDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 139 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+.|.+...+.|.+.+... -.....+.++|++|+||||||+.++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345778888888888766421 1234568899999999999999999987544
No 276
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.53 E-value=0.019 Score=53.23 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|.|+|.+|+|||||+..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999876554
No 277
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.53 E-value=0.023 Score=50.02 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.8
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.....+|+|+|.+|.|||||+..+...+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34577999999999999999999987654
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.52 E-value=0.0077 Score=54.90 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=23.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..+|.|+|.+|+||||++..++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.50 E-value=0.0055 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999999875
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.0075 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+|.|.|+.|+||||||..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999998874
No 281
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.45 E-value=0.014 Score=54.38 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=25.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
...+|.++|++|.||||+|+.++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356889999999999999999998875444
No 282
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.45 E-value=0.017 Score=48.54 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=26.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
++|+|.|-||+||||+|..++..+...-..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4788889999999999999999887553334444
No 283
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.44 E-value=0.013 Score=54.52 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=25.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+|.+.|++|.||||+|+.++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999864
No 284
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.44 E-value=0.025 Score=49.72 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=25.1
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
-....+++|+|++|+|||||.+.+...+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 345679999999999999999999876543
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.41 E-value=0.0065 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.158 Sum_probs=20.5
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
+++|+|+.|.|||||++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999875
No 286
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.41 E-value=0.014 Score=53.95 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=27.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
...+++|+|.+|+|||||++.++..+... .+.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 45799999999999999999999876543 334444
No 287
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.41 E-value=0.029 Score=51.69 Aligned_cols=85 Identities=21% Similarity=0.151 Sum_probs=48.6
Q ss_pred eEEEEEeecccchHHHHHH-HHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 163 VYALGIWGIGGIGKTTIAR-AIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
-+-++|.|.+|+|||+||. .+.++. +-+..|.+..++ ++......+.+.+...-... .+....
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iG---eR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIG---QKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEES---CCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECC---CcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3478899999999999964 666654 345443333333 22334555666655422111 121111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCC
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
.-.+.+++ +++.+||++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 12334444 47899999999943
No 288
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.40 E-value=0.01 Score=49.25 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....|.|.|++|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999998765
No 289
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.40 E-value=0.0066 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998754
No 290
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.39 E-value=0.0078 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+++|+|+.|.|||||.+.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998653
No 291
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.39 E-value=0.031 Score=52.14 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=33.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKL 217 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 217 (279)
-+-++|.|..|+|||+|+..+++.. +-+.++|+. +.++......+.+.+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~----iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIG----CGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEE----CCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEE----ecccHHHHHHHHHHH
Confidence 4578999999999999999987763 234555554 333345555655554
No 292
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.38 E-value=0.01 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|.|+.|+||||||..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5688999999999999999999874
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.37 E-value=0.016 Score=49.88 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=24.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999887654
No 294
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.36 E-value=0.0066 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 448999999999999999998754
No 295
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.35 E-value=0.017 Score=49.72 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
...++|+|+|-||+||||+|..++..+...-..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3467899999999999999999999876653334444
No 296
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.35 E-value=0.0063 Score=55.15 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|.|+|++|.||||+|+.++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 297
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.34 E-value=0.033 Score=51.31 Aligned_cols=85 Identities=19% Similarity=0.117 Sum_probs=48.0
Q ss_pred eEEEEEeecccchHHHHH-HHHHHHhhcCCCce-EEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh--
Q 047481 163 VYALGIWGIGGIGKTTIA-RAIFNNISSNFEGS-CFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD-- 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA-~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~-- 230 (279)
-+-++|.|..|+|||+|| ..+.++ .+-+.. +|+. ++ ++......+.+.+...-... .+....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~-IG---eR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVA-IG---QKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEE-ES---CCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEE-ec---CChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 346889999999999997 456554 234443 3443 32 32344556666654431111 121111
Q ss_pred ------HHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 231 ------IALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 231 ------~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
.-.+.+++ +++.+||++||+...
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 12234444 579999999999543
No 298
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.34 E-value=0.0095 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=21.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 557899999999999999999875
No 299
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.33 E-value=0.015 Score=48.11 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=23.6
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcC-CCc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSN-FEG 193 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~ 193 (279)
.|.+.|.||+||||+|..++..+..+ ++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 47788999999999999999886554 443
No 300
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.30 E-value=0.016 Score=54.40 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...+|+|+|+.|.|||||++.++..+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 34689999999999999999999987643
No 301
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.29 E-value=0.011 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.6
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
..|.|.|..|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998863
No 302
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.24 E-value=0.039 Score=50.98 Aligned_cols=85 Identities=22% Similarity=0.147 Sum_probs=48.7
Q ss_pred eEEEEEeecccchHHHHHH-HHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCchhh---
Q 047481 163 VYALGIWGIGGIGKTTIAR-AIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNVIPD--- 230 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~--- 230 (279)
-+-++|.|.+|+|||+||. .++++. .-+..|.+..++ ++......+.+.+...-... .+....
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IG---eR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIG---QKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEES---CCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcC---CCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3478899999999999964 666654 345443333333 22334556666665421111 221111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCC
Q 047481 231 -----IALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 231 -----~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
.-.+.+++ +++.+||++||+..
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 12234444 47899999999944
No 303
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.23 E-value=0.037 Score=51.12 Aligned_cols=87 Identities=20% Similarity=0.134 Sum_probs=49.3
Q ss_pred eEEEEEeecccchHHHHH-HHHHHHhhc------CCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCc
Q 047481 163 VYALGIWGIGGIGKTTIA-RAIFNNISS------NFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNV 227 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA-~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~ 227 (279)
-+-++|.|.+|+|||+|| ..+.++... +-+..|.+..++ ++......+.+.+...-... .+.
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IG---eR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIG---QKRSTVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEES---CCHHHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECC---CCcHHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 346889999999999995 566676552 244434333333 22334555665555421111 121
Q ss_pred hhh--------HHHHHHHh--CCCcEEEEEeCCCC
Q 047481 228 IPD--------IALSFRRL--SSRKFLIVLDDVTC 252 (279)
Q Consensus 228 ~~~--------~~~l~~~l--~~k~~LlVlDdv~~ 252 (279)
... .-.+.+++ .++.+||++||+..
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 111 12234444 47899999999944
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.21 E-value=0.0086 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..|.|.|++|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998774
No 305
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.21 E-value=0.0079 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999997654
No 306
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.20 E-value=0.16 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
+.+.|.|.+|+||||++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4888999999999999998887754
No 307
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.19 E-value=0.012 Score=44.74 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 308
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.19 E-value=0.011 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.-+||.|++|+||||+|+.+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.18 E-value=0.0098 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.17 E-value=0.0099 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 311
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.15 E-value=0.0083 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||.+.++.-+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987643
No 312
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.13 E-value=0.0085 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.+++|+|+.|.|||||++.++.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998764
No 313
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.12 E-value=0.022 Score=48.57 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
++|+|.|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999987654
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.11 E-value=0.011 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 448999999999999999999874
No 315
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.11 E-value=0.0088 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998764
No 316
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.09 E-value=0.0088 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998754
No 317
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.08 E-value=0.014 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+|.|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998753
No 318
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.07 E-value=0.0089 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 348999999999999999998764
No 319
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.06 E-value=0.013 Score=47.57 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
.+|.|.|+.|+||||+|+.++.++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 48999999999999999999998643
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.05 E-value=0.016 Score=50.20 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+.-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344589999999999999999998775
No 321
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.04 E-value=0.013 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.2
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 322
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.04 E-value=0.01 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 323
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.04 E-value=0.0087 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+|+|.|++|+||||+|+.+...+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999998763
No 324
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.02 E-value=0.0088 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEEEeecccchHHHHHHHHHHHhh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
.+++|+|+.|.|||||.+.++.-+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999876544
No 325
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.01 E-value=0.0096 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||.+.++.-+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4589999999999999999987653
No 326
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.00 E-value=0.0099 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||.+.++..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999997754
No 327
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.99 E-value=0.023 Score=52.18 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=24.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNF 191 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f 191 (279)
..+|.++|++|.||||+++.++..+...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45788999999999999999998866444
No 328
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.99 E-value=0.024 Score=46.48 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=51.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC------CCchhhHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD------HNVIPDIALSFR 236 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~------~~~~~~~~~l~~ 236 (279)
-.+..++|..|.||||.+...+.+...+-..++++.-... . ..+.. .+.+.++.. .+.. .+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~-R~ge~----~i~s~~g~~~~a~~~~~~~----~~~~ 96 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--N-RYSEE----DVVSHNGLKVKAVPVSASK----DIFK 96 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGG----GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--C-cchHH----HHHhhcCCeeEEeecCCHH----HHHH
Confidence 4688899999999999999998887655333443321110 1 11111 222332211 1111 1122
Q ss_pred HhCCCcEEEEEeCCC--ChHHHHHHhhcCCCCCCCeEEEEEecc
Q 047481 237 RLSSRKFLIVLDDVT--CFKQIKSLIRSHDWYMAESRIIITTRN 278 (279)
Q Consensus 237 ~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gsrIiiTTR~ 278 (279)
.+.++--+|++|.+. +.++++.+....+ .|-.||+|-++
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 223333499999983 3445544433222 26789988763
No 329
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.99 E-value=0.01 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998764
No 330
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.98 E-value=0.054 Score=44.29 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=25.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEG 193 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~ 193 (279)
...|.|.|+.|+||||+++.+...+... +++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 3578899999999999999999988654 443
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.96 E-value=0.0084 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+++|+|+.|.|||||.+.++.-+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999987653
No 332
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.94 E-value=0.01 Score=50.09 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 448999999999999999998764
No 333
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.94 E-value=0.014 Score=44.46 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.7
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.92 E-value=0.011 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||.+.++.-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3489999999999999999997654
No 335
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.91 E-value=0.15 Score=41.85 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=17.3
Q ss_pred EEEEeecccchHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.+.|+|..|.||||+...+.-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHh
Confidence 788999999999987665543
No 336
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.90 E-value=0.026 Score=46.60 Aligned_cols=33 Identities=30% Similarity=0.603 Sum_probs=25.5
Q ss_pred EEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 166 LGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
|+|.|-||+||||+|..++..+...-..++.+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 667899999999999999998876533344443
No 337
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.89 E-value=0.012 Score=46.51 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEeecccchHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~ 185 (279)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 338
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.88 E-value=0.011 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998764
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.023 Score=44.82 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557889999999999999998765
No 340
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.86 E-value=0.015 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.++|+|+.|.|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998763
No 341
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.84 E-value=0.074 Score=43.17 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=24.9
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCc
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEG 193 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~ 193 (279)
.|.|-|.-|+||||+++.++..+...++.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 68889999999999999999998765543
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.83 E-value=0.011 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999998764
No 343
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.83 E-value=0.012 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....+++|+|.+|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34569999999999999999999873
No 344
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.82 E-value=0.012 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999998765
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.80 E-value=0.02 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999875
No 346
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.80 E-value=0.012 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+++|+|+.|.|||||.+.++.-+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987653
No 347
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.78 E-value=0.041 Score=51.65 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
...+|.+.|++|+||||+|+.+...+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3568999999999999999999988653
No 348
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.77 E-value=0.25 Score=42.94 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=60.9
Q ss_pred HHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHHhh-cCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcCCCchh
Q 047481 151 EIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNNIS-SNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQDHNVIP 229 (279)
Q Consensus 151 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 229 (279)
++.+.+. + .-.++..++|+.|.||++.++.+...+. ..|+....+. + .. ..++..+...+-.
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~-~~~~~~l~~~~~~---------- 70 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DP-NTDWNAIFSLCQA---------- 70 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CT-TCCHHHHHHHHHH----------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cC-CCCHHHHHHHhcC----------
Confidence 3444444 2 3356889999999999999999998764 3454322222 1 11 2344443332211
Q ss_pred hHHHHHHHhCCCcEEEEEeCCCC-h--HHHHHHhhcCCCCCCCeEEEEEe
Q 047481 230 DIALSFRRLSSRKFLIVLDDVTC-F--KQIKSLIRSHDWYMAESRIIITT 276 (279)
Q Consensus 230 ~~~~l~~~l~~k~~LlVlDdv~~-~--~~~~~l~~~~~~~~~gsrIiiTT 276 (279)
.-+-+.+-++|+|+++. . ...+.|...+....+++.+|++|
T Consensus 71 ------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~ 114 (343)
T 1jr3_D 71 ------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRG 114 (343)
T ss_dssp ------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEE
T ss_pred ------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEc
Confidence 12335667788899865 3 45566665554445688888765
No 349
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.75 E-value=0.033 Score=49.19 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 477999999999999999999987643
No 350
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.74 E-value=0.023 Score=52.46 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=47.0
Q ss_pred eEEEEEeecccchHHHHHH-HHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC--------CCc---hh-
Q 047481 163 VYALGIWGIGGIGKTTIAR-AIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD--------HNV---IP- 229 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~---~~- 229 (279)
-+-++|.|.+|+|||+||. .+++... -+..|.+..+++ +......+.+.+...-... .+. .+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGe---R~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQ---KASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESC---CHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC---CchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4568899999999999964 6666543 444433333332 1333444444443321111 111 11
Q ss_pred ----hHHHHHHHh--CCCcEEEEEeCCCCh
Q 047481 230 ----DIALSFRRL--SSRKFLIVLDDVTCF 253 (279)
Q Consensus 230 ----~~~~l~~~l--~~k~~LlVlDdv~~~ 253 (279)
..-.+.+++ +++.+||++||+...
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 112233333 589999999999543
No 351
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.70 E-value=0.026 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=24.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+|.|.|++|+||||+|+.+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999999875
No 352
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.68 E-value=0.016 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=20.3
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36788999999999999999865
No 353
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.66 E-value=0.021 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 354
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.66 E-value=0.017 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999865
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.65 E-value=0.012 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....+|+|.|+.|.|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34679999999999999999998765
No 356
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.65 E-value=0.023 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=20.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446889999999999999998754
No 357
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.64 E-value=0.034 Score=44.45 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=26.2
Q ss_pred EEEEEe-ecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 164 YALGIW-GIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 164 ~~i~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
++|+|+ +-||+||||+|..++..+...-..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 477787 67999999999999998776433344443
No 358
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.63 E-value=0.026 Score=48.78 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=26.3
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.++++...+.. .++++.|++|+|||||.+.+. .
T Consensus 155 gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 155 GIDELVDYLEG-----FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp THHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH-S
T ss_pred CHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH-H
Confidence 35666666642 388999999999999999998 5
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.62 E-value=0.018 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 360
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.62 E-value=0.018 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 361
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.62 E-value=0.019 Score=50.00 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+++++|.|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47799999999999999999998653
No 362
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.60 E-value=0.018 Score=45.24 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999999875
No 363
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.60 E-value=0.042 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.8
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678899999999999988754
No 364
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.59 E-value=0.022 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.5
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 446789999999999999988864
No 365
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.59 E-value=0.03 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999988754
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.59 E-value=0.019 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
+.+|+|+.|.|||||+..++.-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999764
No 367
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.58 E-value=0.047 Score=44.96 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.7
Q ss_pred eEEEEEee-cccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWG-IGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G-~gGiGKTtLA~~v~~~~~~~ 190 (279)
.++|+|++ -||+||||+|..++..+...
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 46788874 59999999999999998765
No 368
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.55 E-value=0.019 Score=44.14 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998865
No 369
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.53 E-value=0.077 Score=55.94 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecccccCCCCCHHHHHHHHHHHHhcC---------CCchhhH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVREESQRPGGLGCLQQKLLSKLLQD---------HNVIPDI 231 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~---------~~~~~~~ 231 (279)
+.-++|-|+|+.|+||||||.++.......=..++|+. ... ..+... +..++-. ..-++..
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~----~e~-~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l 1498 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEH-ALDPIY-----ARKLGVDIDNLLCSQPDTGEQAL 1498 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTS-CCCHHH-----HHHTTCCGGGCEEECCSSHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cCC-CCCHHH-----HHHcCCCHHHeEEeCCCcHHHHH
Confidence 34679999999999999999999988877778888886 211 223322 4444322 2234556
Q ss_pred HHHHHHhC-CCcEEEEEeCC
Q 047481 232 ALSFRRLS-SRKFLIVLDDV 250 (279)
Q Consensus 232 ~~l~~~l~-~k~~LlVlDdv 250 (279)
..+...++ +..-++|+|-|
T Consensus 1499 ~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1499 EICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCS
T ss_pred HHHHHHHHcCCCCEEEEccH
Confidence 66666665 56789999988
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.53 E-value=0.02 Score=43.69 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEeecccchHHHHHHHHHHH
Q 047481 166 LGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 166 i~I~G~gGiGKTtLA~~v~~~ 186 (279)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999765
No 371
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.50 E-value=0.014 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-.+++|+|+.|.|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3458999999999999999998764
No 372
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.50 E-value=0.019 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999764
No 373
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.50 E-value=0.018 Score=44.12 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.4
Q ss_pred EEEEeecccchHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~ 185 (279)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998854
No 374
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.49 E-value=0.024 Score=50.30 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...++|+|..|.|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988754
No 375
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.47 E-value=0.016 Score=49.16 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEEEeecccchHHHHHHHHHHHh
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.+++|+|+.|.|||||.+.++...
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998665
No 376
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.02 Score=43.82 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999998865
No 377
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.47 E-value=0.02 Score=43.88 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 378
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.47 E-value=0.032 Score=43.18 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999999875
No 379
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.44 E-value=0.02 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|.++|.+|+|||||...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999875
No 380
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.43 E-value=0.0094 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
....|.|.|..|+||||+|+.+...+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999988765
No 381
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.39 E-value=0.021 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999998765
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.39 E-value=0.024 Score=45.85 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
....|.|+|.+|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35578899999999999999998753
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.39 E-value=0.021 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 348999999999999999999864
No 384
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.39 E-value=0.068 Score=46.52 Aligned_cols=28 Identities=36% Similarity=0.355 Sum_probs=23.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
..++...|-||+||||+|..++..+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 4566667999999999999999887655
No 385
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.021 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=19.9
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998763
No 386
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.35 E-value=0.022 Score=43.57 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 387
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.34 E-value=0.027 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.-|.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999999885
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.34 E-value=0.022 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999764
No 389
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.34 E-value=0.036 Score=44.97 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
...+|+|+||+|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45699999999999999999987755
No 390
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.33 E-value=0.028 Score=43.11 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEEeecccchHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIF 184 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~ 184 (279)
--|+|+|.+|+|||||...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999985
No 391
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.32 E-value=0.056 Score=50.60 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=26.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
-+-++|.|..|+|||+|+.++++... -+.++|+.
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~~~--~~v~V~~~ 265 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKWSD--VDLVVYVG 265 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHSS--CSEEEEEE
T ss_pred CCEEeeecCCCccHHHHHHHHHhccC--CCEEEEEE
Confidence 45789999999999999999988743 34555554
No 392
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.31 E-value=0.022 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999888764
No 393
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.30 E-value=0.024 Score=43.90 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
+...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998653
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.29 E-value=0.028 Score=44.34 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=21.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998754
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.28 E-value=0.023 Score=43.94 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 567889999999999999999875
No 396
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.28 E-value=0.024 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999874
No 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.28 E-value=0.019 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|+|+.|.|||||.+.++.-+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999987654
No 398
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.27 E-value=0.026 Score=46.64 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
..+|.|.|+.|+||||+|+.++.++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 399
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.26 E-value=0.058 Score=44.63 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
...|.|.|+.|+||||+++.++..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4578999999999999999999987653
No 400
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.26 E-value=0.023 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
.--|.|+|.+|+|||||.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567899999999999997776553
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.24 E-value=0.024 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=20.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 446789999999999999998765
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.22 E-value=0.079 Score=44.06 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=27.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhcC-CCceEEE
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFL 197 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 197 (279)
...|.|.|+.|+||||+++.+...+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4588999999999999999999987654 5534444
No 403
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.21 E-value=0.023 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|+|+.|.|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 458999999999999999998764
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.20 E-value=0.021 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998754
No 405
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.18 E-value=0.035 Score=42.47 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 406
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.18 E-value=0.025 Score=44.38 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999864
No 407
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.17 E-value=0.025 Score=44.16 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=21.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..--|.|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999865
No 408
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.17 E-value=0.034 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+|.|.|++|+||||+|+.+...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 409
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.17 E-value=0.028 Score=43.55 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557889999999999999998763
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.16 E-value=0.026 Score=43.39 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999764
No 411
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.16 E-value=0.069 Score=47.13 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhh
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNIS 188 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~ 188 (279)
...+++.+.|-||+||||+|..++..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3457888899999999999999998776
No 412
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.16 E-value=0.026 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.1
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999865
No 413
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.16 E-value=0.024 Score=50.25 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999864
No 414
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.15 E-value=0.025 Score=44.20 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999865
No 415
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.14 E-value=0.023 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 348999999999999999999864
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.14 E-value=0.026 Score=44.28 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.5
Q ss_pred EEEEeecccchHHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 417
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.12 E-value=0.027 Score=43.53 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|.|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999999864
No 418
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.12 E-value=0.027 Score=43.87 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999999854
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.029 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 446789999999999999999875
No 420
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.10 E-value=0.052 Score=49.15 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=24.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
.-.+++|+|+.|.|||||.+.+...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 35689999999999999999999887544
No 421
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.10 E-value=0.026 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 557889999999999999998874
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.10 E-value=0.026 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.9
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|+|+|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 423
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.09 E-value=0.021 Score=50.55 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999864
No 424
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.09 E-value=0.01 Score=56.33 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=32.7
Q ss_pred CCccccchhhHHHHHhhccCCC---------CeEEEEEeecccchHHHHHHHHHHHh
Q 047481 140 NPLVGVESRVEEIESLLGAESK---------DVYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 140 ~~~vGr~~~~~~l~~~L~~~~~---------~~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+.++|.+.-...+...|..+.. .-.-|.++|++|+|||+||+.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4578888765555444432210 00157899999999999999997764
No 425
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.07 E-value=0.024 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEEEeecccchHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.-|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999864
No 426
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.06 E-value=0.027 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999999864
No 427
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.06 E-value=0.025 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 348999999999999999999864
No 428
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.05 E-value=0.027 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.7
Q ss_pred EEEEEeecccchHHHHHHHHHHH
Q 047481 164 YALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35778999999999999988764
No 429
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.05 E-value=0.026 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 448999999999999999999864
No 430
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.02 E-value=0.042 Score=45.36 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
....|.|.|+.|+||||+++.+...+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999998765
No 431
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.01 E-value=0.026 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 448999999999999999999864
No 432
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.028 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999999875
No 433
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.00 E-value=0.028 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998865
No 434
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.00 E-value=0.051 Score=45.66 Aligned_cols=26 Identities=19% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.....|+|+|.+|+|||||...+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999864
No 435
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.99 E-value=0.032 Score=49.51 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.3
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcCCCceEEEeecc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQNVR 201 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 201 (279)
..++|+|+.|.|||||++.+...+.. -...+.+.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~ 212 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVP 212 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCcc
Confidence 38999999999999999999876543 34566665443
No 436
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.98 E-value=0.028 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999999875
No 437
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.98 E-value=0.027 Score=50.25 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=21.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHHh
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
-.+++|.|+.|.|||||.+.++--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3489999999999999999998653
No 438
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.97 E-value=0.11 Score=42.56 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.4
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhcC-CCceEEE
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISSN-FEGSCFL 197 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 197 (279)
..|.|.|+.|+||||+++.++..+... +..+++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 378899999999999999999987654 4333333
No 439
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.97 E-value=0.052 Score=48.23 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.5
Q ss_pred CCeEEEEEee-cccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 161 KDVYALGIWG-IGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 161 ~~~~~i~I~G-~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...++|+|+| -||+||||+|..++..+...-..++.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578898885 8999999999999988765533344443
No 440
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.97 E-value=0.043 Score=47.33 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=26.3
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.++++...+.. .+++|+|++|+|||||.+.+...
T Consensus 159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 35566666652 27899999999999999998754
No 441
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.97 E-value=0.03 Score=45.20 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|.|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 442
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.96 E-value=0.052 Score=45.80 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccchHHHHHHHHHHH
Q 047481 160 SKDVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 160 ~~~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
......|.++|.+|+|||||...+...
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 334567889999999999999999864
No 443
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.96 E-value=0.026 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.6
Q ss_pred EEEEeecccchHHHHHHHHHH
Q 047481 165 ALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~ 185 (279)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999764
No 444
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.95 E-value=0.031 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.9
Q ss_pred eEEEEEeecccchHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999875
No 445
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.03 Score=43.47 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998765
No 446
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.93 E-value=0.03 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3557889999999999999999875
No 447
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.93 E-value=0.028 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 458999999999999999999864
No 448
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.92 E-value=0.021 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.0
Q ss_pred CeEEEEEeecccchHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIF 184 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~ 184 (279)
...-|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999885
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.92 E-value=0.038 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.7
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3557889999999999999999875
No 450
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.91 E-value=0.02 Score=46.01 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
....|+|+|.+|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999988764
No 451
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.91 E-value=0.32 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHH
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999988764
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.91 E-value=0.046 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEeecccchHHHHHHHHHHHh
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNI 187 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~ 187 (279)
+++|+|++|+|||||.+.+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 78999999999999999987543
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.031 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999865
No 454
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.031 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.5
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3557889999999999999998765
No 455
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.89 E-value=0.031 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998765
No 456
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.89 E-value=0.03 Score=44.54 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.4
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999998764
No 457
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.84 E-value=0.032 Score=49.27 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHHhhc
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
-..++|+|..|.|||||.+.+......
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999998653
No 458
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.84 E-value=0.032 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.9
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4678999999999999999998754
No 459
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.84 E-value=0.12 Score=45.43 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCeEEEEEeecccchHHHHHHHHHHHhhcC
Q 047481 161 KDVYALGIWGIGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 161 ~~~~~i~I~G~gGiGKTtLA~~v~~~~~~~ 190 (279)
+...++.+.|-||+||||+|..++..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 335566677999999999999999886554
No 460
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.033 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.650 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 446789999999999999999874
No 461
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.83 E-value=0.042 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3557889999999999999998775
No 462
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.79 E-value=0.072 Score=50.94 Aligned_cols=45 Identities=22% Similarity=0.148 Sum_probs=27.2
Q ss_pred hhHHHHHhhccCCCCeEEEEEeecccchHHHHHHHHHHH-hhcCCCceEEEe
Q 047481 148 RVEEIESLLGAESKDVYALGIWGIGGIGKTTIARAIFNN-ISSNFEGSCFLQ 198 (279)
Q Consensus 148 ~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~ 198 (279)
+.+.+...|... .+..|+||||.|||+.+.++... +... ..+.++
T Consensus 194 Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~ 239 (646)
T 4b3f_X 194 QKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEE
Confidence 445566666422 26779999999999665555444 4332 345554
No 463
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.79 E-value=0.033 Score=43.97 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446789999999999999999864
No 464
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.78 E-value=0.033 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999875
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.73 E-value=0.033 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.4
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999875
No 466
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.73 E-value=0.092 Score=46.04 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=26.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHHhhcCCCceEEE
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNNISSNFEGSCFL 197 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 197 (279)
...++.+.|-||+||||+|..++..+...-..++.+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 356777889999999999999998876543333333
No 467
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.71 E-value=0.034 Score=43.77 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999865
No 468
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.71 E-value=0.07 Score=45.50 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=26.8
Q ss_pred hHHHHHhhccCCCCeEEEEEee---cccchHHHHHHHHHHHhhcC
Q 047481 149 VEEIESLLGAESKDVYALGIWG---IGGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 149 ~~~l~~~L~~~~~~~~~i~I~G---~gGiGKTtLA~~v~~~~~~~ 190 (279)
+.++.+.+... .++|.|++ -||+||||+|..++..+...
T Consensus 23 ~~~~~r~~~~~---~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 23 LEELRRILSNK---NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHHH---CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC---CcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 34444444432 23566665 89999999999999887654
No 469
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.69 E-value=0.034 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
-.+++|.|+.|.|||||.+.++--
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 458999999999999999999753
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.67 E-value=0.035 Score=43.89 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999998864
No 471
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.66 E-value=0.073 Score=53.06 Aligned_cols=23 Identities=26% Similarity=-0.026 Sum_probs=20.5
Q ss_pred CeEEEEEeecccchHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIF 184 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~ 184 (279)
...+++|.|+.|.|||||.+.+.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999984
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.64 E-value=0.036 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999875
No 473
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.63 E-value=0.036 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 474
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.62 E-value=0.027 Score=43.91 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.3
Q ss_pred CeEEEEEeecccchHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
...-|+|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 355788999999999999988864
No 475
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.60 E-value=0.044 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.59 E-value=0.036 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999998764
No 477
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.58 E-value=0.039 Score=47.57 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999865
No 478
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.57 E-value=0.052 Score=42.64 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.2
Q ss_pred CeEEEEEeecccchHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
...-|+|+|.+|+|||||...+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445688999999999999998854
No 479
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.53 E-value=0.036 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.50 E-value=0.054 Score=50.45 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=25.7
Q ss_pred eEEEEEeecccchHHHHHHHHH-HHhhcCCCceEEEe
Q 047481 163 VYALGIWGIGGIGKTTIARAIF-NNISSNFEGSCFLQ 198 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~-~~~~~~f~~~~~~~ 198 (279)
-.+++|.|++|.|||||++.++ .-+...-...+++.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3489999999999999999963 33322224566665
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.49 E-value=0.04 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 482
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.49 E-value=0.041 Score=43.46 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999875
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.46 E-value=0.041 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998864
No 484
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.042 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998864
No 485
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.41 E-value=0.083 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.0
Q ss_pred CeEEEEEeecccchHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
...+++|.|+.|.|||||.+.+..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 356899999999999999998864
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.40 E-value=0.038 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=19.8
Q ss_pred eEEEEEeecccchHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFN 185 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~ 185 (279)
..-|+|+|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44688999999999999999864
No 487
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.40 E-value=0.086 Score=42.70 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=24.7
Q ss_pred EEEEe-ecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 165 ALGIW-GIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 165 ~i~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
+|+|+ +-||+||||+|..++..+...- .++.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 46665 7799999999999999887654 444443
No 488
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.04 Score=43.26 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=21.1
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999853
No 489
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.39 E-value=0.04 Score=43.99 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=20.6
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3557889999999999999998743
No 490
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.39 E-value=0.11 Score=49.59 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=25.2
Q ss_pred EEEEeecccchHHHHHHHHHHHhhcCCCceEEEe
Q 047481 165 ALGIWGIGGIGKTTIARAIFNNISSNFEGSCFLQ 198 (279)
Q Consensus 165 ~i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 198 (279)
...|+|++|.|||+++..+...+...-...+.++
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 6789999999999998888877654333445554
No 491
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.38 E-value=0.05 Score=44.86 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.8
Q ss_pred CeEEEEEeecccchHHHHHHHHHHH
Q 047481 162 DVYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 162 ~~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998764
No 492
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.38 E-value=0.043 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 557889999999999999998764
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.38 E-value=0.041 Score=43.03 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=20.6
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999999764
No 494
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.36 E-value=0.034 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.8
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 446788999999999999877664
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.35 E-value=0.04 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|.|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999988754
No 496
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.34 E-value=0.044 Score=43.74 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.7
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998874
No 497
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.32 E-value=0.043 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.9
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998864
No 498
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.32 E-value=0.055 Score=44.40 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.7
Q ss_pred EEEEEeecccchHHHHHHHHHHHhhc
Q 047481 164 YALGIWGIGGIGKTTIARAIFNNISS 189 (279)
Q Consensus 164 ~~i~I~G~gGiGKTtLA~~v~~~~~~ 189 (279)
..|.+-|+.|+||||+++.+...+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47889999999999999999998865
No 499
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.31 E-value=0.042 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEEeecccchHHHHHHHHHHH
Q 047481 163 VYALGIWGIGGIGKTTIARAIFNN 186 (279)
Q Consensus 163 ~~~i~I~G~gGiGKTtLA~~v~~~ 186 (279)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998753
No 500
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.31 E-value=0.088 Score=42.70 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.4
Q ss_pred EEEEEeec-ccchHHHHHHHHHHHhhcC
Q 047481 164 YALGIWGI-GGIGKTTIARAIFNNISSN 190 (279)
Q Consensus 164 ~~i~I~G~-gGiGKTtLA~~v~~~~~~~ 190 (279)
++|.|.|. ||+||||+|..++..+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46788875 8999999999999887655
Done!