BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047483
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
+ IIG G+AGL+ A +L G + +FD G D AQ+FT
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHLFDKSR---GSGGRXSSKRSDAGALDXGAQYFTAR 61
Query: 153 DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNG 200
D RF V W +G V W ++ G+ +P P +++G G
Sbjct: 62 DRRFATAVKQWQAQGHVAEWTPLLYNFH-AGRLSPSPDEQVRWVGKPG 108
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
SS V +IG G++GLA A L G+ TVF+ GG++ R + LI+D A
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA-GGKL--RSVSQDGLIWDEGAN 67
Query: 148 FFTVNDSRFHELVD 161
T ++ L+D
Sbjct: 68 TXTESEGDVTFLID 81
>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
With Fad And Sam
Length = 689
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI---FDHAAQFF 149
+ IIGGG+ AL+L +RG T++ G G R PL+ D FF
Sbjct: 267 IAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASGNRQGALYPLLNGKNDALETFF 326
Query: 150 TVNDSRFHELVDGWLERGLV--RPWEGV 175
T + D LE+G+ W GV
Sbjct: 327 TSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 17/28 (60%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTG 122
IIG G AGL CA L K G TVFD G
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNG 36
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 6/152 (3%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHA 145
P ++ +V ++GGG++GLA A L RG + + ++ LGG +GT + + +
Sbjct: 12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR-LGGAVGTHALA--GYLVEQG 68
Query: 146 AQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEV--GGQFTPFPSSPPKYIGVNGMRP 203
F + L G +R + V G+ P+SPP ++ + + P
Sbjct: 69 PNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASD-ILP 127
Query: 204 LADSLLAQTSMVSIVRPCWISNLQPFNGMWHL 235
L L + S P + G HL
Sbjct: 128 LGARLRVAGELFSRRAPEGVDESLAAFGRRHL 159
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS 154
I+G G+ G CA L K K V + NH G G Q I + A F ND
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQ--IHKYGAHIFHTNDK 63
Query: 155 RFHELVDGWLE 165
+ V+ +E
Sbjct: 64 YIWDYVNDLVE 74
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
V IIG G+AGL A +L + G++ + +GGR+ T + G Q +D A
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT-VTGYQGRKYDIGA 63
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 88 SSDP-HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
+S+P HV ++G GM+GL+ A L G K TV + GGR+ T
Sbjct: 30 TSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERA-GGRVRT 74
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
V IIG G+AGL A +L + G++ + +GGR+ T + G Q +D A
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT-VTGYQGRKYDIGA 63
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
V IIG G+AGL A +L + G++ + +GGR+ T + G Q +D A
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT-VTGYQGRKYDIGA 63
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
V IIG G+AGL A +L + G++ + +GGR+ T + G Q +D A
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT-VTGYQGRKYDIGA 63
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146
V IIG G+AGL A +L + G++ + +GGR+ T + G Q +D A
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT-VTGYQGRKYDIGA 63
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
P V ++G GM+G++ A L + G+ + +GGRM
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 44
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
P V ++G GM+G++ A L + G+ + +GGRM
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 44
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 83 FTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123
AP+ +D V I+GGG G+A AL L R V V D G+
Sbjct: 21 MNAPIETD--VLILGGGPVGMALALDLAHRQVGHLVVDAGD 59
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
V ++GGG AGL A L K G K TV + GGR+ T G + Q T +
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTR-PGGRVWTARGGSEETDLSGETQKCTFS 72
Query: 153 DSRFHEL 159
+ F+ +
Sbjct: 73 EGHFYNV 79
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 88 SSDP-HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
+S+P HV ++G GM+GL+ A L G + TV + GGR+ T
Sbjct: 30 TSNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERA-GGRVRT 74
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 24/170 (14%)
Query: 92 HVGIIGGGMAGLACALSLDKRG---VKSTVFDTGNHGLGGRMGTRMIGPQP-LIFDHAAQ 147
V I+G GM G CA L ++ + V+D + GGRM T P D AQ
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS-GGRMTTACSPHNPQCTADLGAQ 61
Query: 148 FFTVN------DSRFH-ELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNG 200
+ T RF+ EL+ + R L P EG++ ++ G
Sbjct: 62 YITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV-----------MKEGDCNFVAPQG 110
Query: 201 MRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250
+ + L ++ R ++ + + W +S+ QFD++V+
Sbjct: 111 ISSIIKHYLKESGAEVYFRH-RVTQINLRDDKWEVSKQTGSPEQFDLIVL 159
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI 135
V I+G G++GLA A +L K G+ V + + +GGR T I
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDR-VGGRTWTDTI 49
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 88 SSDP-HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
+S+P HV I+G GMAGL+ A L G + TV + GGR+ T
Sbjct: 30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP-GGRVRT 74
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 152 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 197
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 152 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 197
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 104 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 149
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 103 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 148
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 103 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 148
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 103 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 148
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 103 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 148
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDT 121
V IIGGG AG + A L +RG+K + D+
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDS 37
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFF 149
D V I+G G +GL A L K G+ V + + +GGR T I + + Q+
Sbjct: 7 DRDVVIVGAGPSGLTAARELKKAGLSVAVLEARDR-VGGRTWTDTI--DGAMLEIGGQWV 63
Query: 150 TVNDSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR 202
+ + + EL+D E GL ++ + YIG +G R
Sbjct: 64 SPDQTVLMELLD---ELGL--------------KMYSRYRDGESVYIGADGKR 99
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
P V IIG G++GLA A L G+ T+ + + +GGR+ T
Sbjct: 274 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR-VGGRVAT 319
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 98 GGMAGLACALSL-----DKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN 152
G + LA LSL D+ G S VF + G+ + I+ A + VN
Sbjct: 460 GTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGV-----------ESSIWLLAKAYVVVN 508
Query: 153 DSRFHELVDGWLE-RGLVRPW 172
DS +H+LV WL +V P+
Sbjct: 509 DSCYHQLVSHWLNTHAVVEPF 529
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 83 FTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
TAP + D V IIGGG AGL A+ + + + + + G
Sbjct: 1 MTAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG 40
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI 135
V I+G G +GLA A +L K G+ V + + +GGR T I
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDR-VGGRTWTDTI 49
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI 135
V I+G G +GLA A +L K G+ V + + +GGR T I
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDR-VGGRTWTDTI 49
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 92 HVGIIGGGMAGLACALSLDKR 112
HV IIGGG+ GLA A ++K
Sbjct: 7 HVVIIGGGITGLAAAFYMEKE 27
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI 135
V I+G G +GLA A +L K G+ V + + +GGR T I
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDR-VGGRTWTDTI 49
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124
H +IGGG G+ +L +RG++ T+ + N
Sbjct: 189 HATVIGGGFIGVEXVENLRERGIEVTLVEXANQ 221
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 85 APV--SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
APV S D + +IGGG AGLACA G + D
Sbjct: 2 APVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLD 39
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 85 APV--SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
APV S D + +IGGG AGLACA G + D
Sbjct: 2 APVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLD 39
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVND 153
I+G G+AGL L + G T+ + + +GGR+ T +P F AQ+
Sbjct: 49 IVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGA 108
Query: 154 SR---FHELVDGWLER-GLVRP-WEGVIGELEVGGQFTPFP 189
R FH L +++ GL R + V + + G Q P P
Sbjct: 109 MRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVP 149
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
V +IGGG++GL+ A L + GV V + + +GGR T
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDR-VGGRTYT 43
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 79 EQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124
+++ T +++ H ++GGG GL SL G+K+T+ + +
Sbjct: 140 DRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ 185
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 86 PVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
P ++ ++G G AGLA A++ RG + T+FD
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFD 403
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
V +IGGG++GL+ A L + GV V + + +GGR T
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDR-VGGRTYT 54
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
V +IGGG++GL+ A L + GV V + + +GGR T
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDR-VGGRTYT 43
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGN 123
++GGG +GL+ AL L + G+K V D G
Sbjct: 6 VVGGGPSGLSAALFLARAGLKVLVLDGGR 34
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130
SD V ++G G +GL A +L RG + + G LGGR+
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD-LGGRV 430
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
S D + +IGGG AGLACA G + D
Sbjct: 3 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLD 35
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133
++GGG +GL A L G K + + G LGGR +R
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGER-LGGRAYSR 43
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 83 FTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG-RMGTRMIGPQPL 140
AP+ +D V I+GGG G+A AL L R V V + + + R+GT IGP+ +
Sbjct: 21 MNAPIETD--VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGT--IGPRSM 75
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133
++GGG +GL A L G K + + G LGGR +R
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGER-LGGRAYSR 43
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 93 VGIIGGGMAGLACALSLDKRGV 114
+ ++GGG G+AC L++ +G+
Sbjct: 17 ITVVGGGELGIACTLAISAKGI 38
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124
H ++GGG GL SL G+K+T+ + +
Sbjct: 153 HATVVGGGFIGLEXXESLHHLGIKTTLLELADQ 185
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 88 SSDP-HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132
+S+P V I+G GM+GL+ A L G + TV + GG++ T
Sbjct: 43 TSNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERA-GGQVKT 87
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 22/132 (16%)
Query: 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT-------GNHGLGGRMGTRMIGPQPLIF 142
D +IGGG G+A A G + +FD G+GG P+ L+
Sbjct: 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMH 101
Query: 143 --DHAAQFFTVNDSRFHELVDGWLERGLVRPWEGVIGELEVG------GQFTPFPSSPPK 194
H F ++ + GW L W+ ++ ++ T SS K
Sbjct: 102 YAGHMGSIFKLDSKAY-----GWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK 156
Query: 195 YIGVNGMRPLAD 206
YI NG+ L D
Sbjct: 157 YI--NGLAKLKD 166
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124
H ++GGG GL SL G+K+T+ + +
Sbjct: 153 HATVVGGGFIGLEXXESLHHLGIKTTLLELADQ 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,882,224
Number of Sequences: 62578
Number of extensions: 273457
Number of successful extensions: 840
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 104
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)