BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047483
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54EW2|Y9130_DICDI Putative bifunctional amine oxidase DDB_G0291301 OS=Dictyostelium
discoideum GN=DDB_G0291301 PE=1 SV=1
Length = 1080
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 19 LKPPKHSRL-SKAKTLTSTIKATSSQPKPNNANARKPTPRNRRRSSYGS---SRRSALKK 74
++ P+++ + K T+ + T+ P+ A++ PT RS + S R ++
Sbjct: 427 VRAPRYTSMHCKPLTIAKSTVPTNQSSNPDGASSTAPT--QSLRSLFASRLLQRSVGMEA 484
Query: 75 TF-----AQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129
F T D VGIIG GMAGL A+ L G++ + + +GGR
Sbjct: 485 KFHSIIAKNRSKRSTKASQKDLTVGIIGAGMAGLYAAMILQDLGLQYNILEANKERVGGR 544
Query: 130 MGTRMIGPQPLIFDHAAQFFTVNDSRF--HELVDGWLERGLVRPWEGVIGELEVGGQFTP 187
+ T PQ Q + RF E++D L L +PW + +LE G P
Sbjct: 545 IYTYRF-PQN---QDKYQTVELGAMRFPKIEIMDRLLN--LDKPW-SLFSKLEKAGHKIP 597
Query: 188 FPSSPPKYIGV-------NGMRPLADSLL 209
+ P ++ V NG R A++LL
Sbjct: 598 ---TIPYHLTVDNNLVYYNGKRIFANTLL 623
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia
oleracea GN=POX2 PE=1 SV=1
Length = 531
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 79 EQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQ 138
E+ P+S+ V ++G G++GLA A L G+ T+F+ + GG++ T +
Sbjct: 32 ERNQVNQPISAK-RVAVVGAGVSGLAAAYKLKSNGLNVTLFEADSRA-GGKLKT--VVKD 87
Query: 139 PLIFDHAAQFFTVNDSRFHELVD 161
LI+D A T +D L D
Sbjct: 88 GLIWDEGANTMTESDEEVTSLFD 110
>sp|P43800|GLPB_HAEIN Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=glpB PE=3 SV=1
Length = 432
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
V IIGGG+AGL CA++L +RG + + + G
Sbjct: 5 VAIIGGGLAGLTCAIALQQRGKRCVIINNG 34
>sp|Q0HWM0|MNMC_SHESR tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain MR-7) GN=mnmC
PE=3 SV=2
Length = 703
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 85 APVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF-- 142
A V+ D V I+GGG+A LSL +RG ST+F N G G R PL+
Sbjct: 275 ALVAKDHPVAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNRQGAIYPLLTPE 334
Query: 143 -DHAAQFF 149
D ++FF
Sbjct: 335 NDELSRFF 342
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum
GN=PPXII PE=1 SV=1
Length = 504
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147
SS V +IG G++GLA A L G+ TVF+ GG++ R + LI+D A
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA-GGKL--RSVSQDGLIWDEGAN 67
Query: 148 FFTVNDSRFHELVD 161
T ++ L+D
Sbjct: 68 TMTESEGDVTFLID 81
>sp|Q9CNT7|MNMC_PASMU tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pasteurella multocida (strain Pm70)
GN=mnmC PE=3 SV=1
Length = 672
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 60 RRSSYGSSRRSALKKTFAQEQ---------VTFTAPVSSDPHVGIIGGGMAGLACALSLD 110
+R YG +R L+ AQ+Q + A ++ + + +IGGG+A + ALSL
Sbjct: 225 KRKGYGK-KRECLQGVKAQQQPADIHAPWALVQPAELTENADIALIGGGIASVFSALSLL 283
Query: 111 KRGVKSTVFDTGN 123
+RG K TV+ N
Sbjct: 284 ERGAKVTVYCEDN 296
>sp|A8QL51|OXLA_BUNMU L-amino-acid oxidase OS=Bungarus multicinctus PE=2 SV=1
Length = 517
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 58 NRRRSSYGSSRRSALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKST 117
+ RRS R A + F + S+ HV ++G GMAGL+ A L+K G + T
Sbjct: 20 DDRRSPLEECFREADYEEFLEIARNGLKKTSNPKHVVVVGAGMAGLSAAYVLEKAGHRVT 79
Query: 118 VFDTGNHGLGGRMGT 132
+ + + +GGR T
Sbjct: 80 LLEASDR-VGGRANT 93
>sp|Q0HKB8|MNMC_SHESM tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain MR-4) GN=mnmC
PE=3 SV=2
Length = 699
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 84 TAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF- 142
TA + D + I+GGG+A LSL +RG ST+F N G G R PL+
Sbjct: 270 TALATKDHPIAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNRQGAIYPLLTP 329
Query: 143 --DHAAQFF 149
D ++FF
Sbjct: 330 ENDELSRFF 338
>sp|Q0I2W9|MNMC_HAES1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus somnus (strain 129Pt)
GN=mnmC PE=3 SV=1
Length = 676
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 59 RRRSSYGSSRRS--ALKKTFAQEQVTF-------TAPVSSDPHVGIIGGGMAGLACALSL 109
++R YG R +K + Q+ F + +S D + IIGGG+A L ALSL
Sbjct: 224 QKRKGYGKKRECLCGIKNSTQQQNAKFPWYLNQPASLLSED--IAIIGGGIASLFTALSL 281
Query: 110 DKRGVKSTVF 119
KRG K T++
Sbjct: 282 LKRGAKVTLY 291
>sp|Q6D2N1|MNMC_ERWCT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=mnmC PE=3 SV=1
Length = 675
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI---FD 143
S+ + IIGGG+A + AL+L +RG T++ + G G R PL+ D
Sbjct: 262 ASTTDDIAIIGGGIASVLTALALQRRGANVTLYCAESQPATGASGNRQGALYPLLNNRHD 321
Query: 144 HAAQFFTVNDSRFHELVDGWLERGL--VRPWEGV 175
++FF++ H ++GL W GV
Sbjct: 322 AVSRFFSLAFDFAHRSYSALAQQGLEFEHQWCGV 355
>sp|Q5U2W9|RNLS_RAT Renalase OS=Rattus norvegicus GN=Rnls PE=2 SV=1
Length = 315
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 14/164 (8%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG--LGGRMGTRMIGPQP-LIFDHAAQFF 149
V ++G G+ G CA L K + +GGRM T P D AQ+
Sbjct: 4 VLVVGAGLTGSLCAALLRKEITAPLYLALWDKAGDIGGRMTTANSPHNPRCTADLGAQYI 63
Query: 150 TVN---DSRFHELVDGWLERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLAD 206
T + + L G++ P I +EV ++ +G+ +
Sbjct: 64 TCTPHYAKKHQNFYEELLAHGILEPLTSPIKGMEV-------KEGESNFVAPHGVSSIIK 116
Query: 207 SLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250
L ++ +R C ++ + + W +SE+ QFD+V++
Sbjct: 117 YYLKESGAEVFLRQC-VTQINLRDNKWEVSEDTGSTQQFDLVIL 159
>sp|A5UE48|GLPB_HAEIE Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain PittEE) GN=glpB PE=3
SV=1
Length = 432
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
V IIGGG+AGL C ++L +RG + + + G
Sbjct: 5 VAIIGGGLAGLTCGIALQQRGKRCVIINNG 34
>sp|P23623|OXLA_NEUCR L-amino-acid oxidase OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=lox
PE=1 SV=2
Length = 696
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 78 QEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGP 137
+E T + ++ I+G GM+GL L L + G+ + G + LGGR+ T +
Sbjct: 164 KEISTVDVEKAKSKNIAIVGAGMSGLMTYLCLTQAGMTNVSIIEGGNRLGGRVHTEYLSG 223
Query: 138 QPLIFDHAAQ 147
P FD++ Q
Sbjct: 224 GP--FDYSYQ 231
>sp|Q6F7Y9|MNMC_ACIAD tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter sp. (strain ADP1) GN=mnmC
PE=3 SV=1
Length = 623
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
S+ H +IG G+AGL CA SL +RG + T+ D
Sbjct: 260 STQQHFAVIGAGIAGLHCAWSLAQRGHRVTLVD 292
>sp|Q5E450|MNMC_VIBF1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=mnmC PE=3 SV=1
Length = 680
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI---FDHAAQFF 149
V IIGGG+A A A +L +RGVK +V+ G G + PL+ F+ ++FF
Sbjct: 274 VAIIGGGVASAALATTLIRRGVKVSVYCKDEKSAQGASGNKQGAVYPLLNEKFNSLSRFF 333
>sp|Q5E0X7|GLPB_VIBF1 Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=glpB PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGL 126
IIGGGMAGL+CAL + G+K+ V +G L
Sbjct: 7 IIGGGMAGLSCALRCLEAGLKTAVIASGQSAL 38
>sp|A8QL52|OXLA_BUNFA L-amino-acid oxidase OS=Bungarus fasciatus PE=1 SV=1
Length = 517
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 63 SYGSSRRSALKKTFAQEQVTFTAPV-------SSDP-HVGIIGGGMAGLACALSLDKRGV 114
S RRSAL++ F + + +S+P HV ++G GMAGL+ A L G
Sbjct: 17 SCADDRRSALEECFREADYEEFLEIARNGLKKTSNPKHVVVVGAGMAGLSAAYVLAGAGH 76
Query: 115 KSTVFDTGNHGLGGRMGT 132
+ T+ + + +GGR+ T
Sbjct: 77 RVTLLEASDR-VGGRVNT 93
>sp|P44246|MNMC_HAEIN tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=mnmC PE=3 SV=2
Length = 670
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA---QFF 149
V IIGGG+A L A+SL KRG K T++ + G + P + D A F+
Sbjct: 266 VAIIGGGIASLCAAISLIKRGAKVTIYCEDDALALNASGNKQGAFYPQLSDDNALTVDFY 325
Query: 150 TVNDSRFHELVDGWLERGLV 169
S +L+D +E+ +V
Sbjct: 326 LHAFSYGRQLLDWAIEQNIV 345
>sp|B5ET22|GLPB_VIBFM Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Vibrio
fischeri (strain MJ11) GN=glpB PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGL 126
IIGGGMAGL+CAL + G+K+ V +G L
Sbjct: 7 IIGGGMAGLSCALRCLEAGLKTAVIASGQSAL 38
>sp|O23787|THI4_CITSI Thiamine thiazole synthase, chloroplastic OS=Citrus sinensis
GN=THI1 PE=2 SV=1
Length = 356
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 27/136 (19%)
Query: 10 SSSFLILQPLKPPKHSRLSKAKTLTSTIKATSSQPKPNNANARKPTPRNRRRSSYGSSRR 69
S S L LQP+K + + LS I A++S P + N K P S +RR
Sbjct: 31 SPSLLRLQPIKSSRPNNLS--------ISASASPPY--DLNTFKFDPIKESIVSREMTRR 80
Query: 70 SALKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRG------VKSTVFDTGN 123
+ + +T+ +D V ++G G AGL+CA L K ++ +V G
Sbjct: 81 ------YMTDMITY-----ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
Query: 124 HGLGGRMGTRMIGPQP 139
LGG++ + M+ +P
Sbjct: 130 AWLGGQLFSAMVVRKP 145
>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain
K12) GN=gltD PE=1 SV=3
Length = 472
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFD 120
V IIG G AGLACA L + GVK+ VFD
Sbjct: 149 VAIIGAGPAGLACADVLTRNGVKAVVFD 176
>sp|A8QL58|OXLA_NAJAT L-amino-acid oxidase (Fragment) OS=Naja atra PE=1 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 62 SSYGSSRRSALKKTFAQ---EQVTFTA-----PVSSDPHVGIIGGGMAGLACALSLDKRG 113
S RRS L++ F Q E++ A S+ HV ++G GMAGL+ A L G
Sbjct: 16 ESCADDRRSPLEECFQQNDYEEILEIARNGLKKTSNPKHVVVVGAGMAGLSAAYVLAGAG 75
Query: 114 VKSTVFDTGNHGLGGRMGT 132
K T+ + +GGR+ T
Sbjct: 76 HKVTLLEASER-VGGRVIT 93
>sp|Q65R09|GLPB_MANSM Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=glpB PE=3 SV=1
Length = 431
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGL 126
V IIG G+AGL C L+L ++GV+ + + G L
Sbjct: 5 VVIIGAGIAGLTCGLTLQEKGVRCAIINNGQAAL 38
>sp|A5WGY8|MNMC_PSYWF tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Psychrobacter sp. (strain PRwf-1)
GN=mnmC PE=3 SV=1
Length = 739
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 55 TPRNRRRSSYGSSRRSALKKTFAQEQVTF-TAPVSSDPHVGIIGGGMAGLACALSLDKRG 113
T N+ + Y + AL+ ++EQVT T V+ + + +IG G+ GL A SL +RG
Sbjct: 291 TSDNQGATEYDAKSTLALR---SKEQVTLDTHAVTPNEQIAVIGAGVCGLMAAWSLAQRG 347
Query: 114 VKSTVFDTGNHGLGGRMGTR-MIGPQPLIFDHAAQFF----TVNDSRFHELVD 161
++ D G R ++ P+ H A+ + RF+ +D
Sbjct: 348 NAVSLIDKEAPLAGASGNPRALLAPKMTPLAHVAEHLHSISYLYSQRFYRQID 400
>sp|A4SNE3|MNMC_AERS4 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Aeromonas salmonicida (strain A449)
GN=mnmC PE=3 SV=1
Length = 672
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 83 FTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF 142
+ P D V IIGGG+A ALSL +RG K T+ + G G R PL+
Sbjct: 262 YARPAGRDGEVVIIGGGIASAMTALSLVERGRKVTLLCEDHELATGASGNRQGALYPLLN 321
Query: 143 -DHAAQFFTVNDSRFHELVDGWLERGLV 169
+H A SRF+ L G+ + L+
Sbjct: 322 GEHDAL------SRFYSLAFGYARQRLL 343
>sp|B1JGH2|MNMC_YERPY tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|A4TM73|MNMC_YERPP tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis (strain Pestoides F)
GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|Q1CHL1|MNMC_YERPN tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|A9R7V8|MNMC_YERPG tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|Q8ZD36|MNMC_YERPE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis GN=mnmC PE=1 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|Q1C669|MNMC_YERPA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|Q668W0|MNMC_YERPS tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=mnmC PE=3 SV=2
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|B2K8I4|MNMC_YERPB tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|A7FGL1|MNMC_YERP3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=mnmC PE=3 SV=1
Length = 689
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 68 RRSALKKTFAQEQVTFTAPVSSDP------HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121
+R L T Q+ TAP P + IIGGG+ AL+L +RG T++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 122 GNHGLGGRMGTRMIGPQPLI---FDHAAQFFTVNDSRFHELVDGWLERGLV--RPWEGV 175
G G R PL+ D FFT + D LE+G+ W GV
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIAFDHQWCGV 354
>sp|A5UHH2|GLPB_HAEIG Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain PittGG) GN=glpB PE=3
SV=1
Length = 432
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
V IIGGG+AGL C +++ +RG + + + G
Sbjct: 5 VAIIGGGLAGLTCGIAIQQRGKRCVIINNG 34
>sp|A5UCC9|MNMC_HAEIE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain PittEE)
GN=mnmC PE=3 SV=1
Length = 670
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVF 119
V IIGGG+A L A+SL KRG K T++
Sbjct: 266 VAIIGGGIASLCAAISLVKRGAKVTIY 292
>sp|P37127|AEGA_ECOLI Protein AegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2
Length = 659
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFD 120
D V IIG G AGLACA L + GV TV+D
Sbjct: 327 DKRVAIIGAGPAGLACADVLTRNGVGVTVYD 357
>sp|A0KV89|MNMC_SHESA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain ANA-3) GN=mnmC
PE=3 SV=2
Length = 697
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF---DHAA 146
D V I+GGG+A LSL +RG ST+F N G G R PL+ D +
Sbjct: 274 DHPVAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNRQGAIYPLLTPENDELS 333
Query: 147 QFF 149
+FF
Sbjct: 334 RFF 336
>sp|B0UT85|MNMC_HAES2 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus somnus (strain 2336) GN=mnmC
PE=3 SV=1
Length = 676
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 59 RRRSSYGSSRRSALKKTFAQEQVTFTAP---------VSSDPHVGIIGGGMAGLACALSL 109
++R YG R A Q AP +S D + IIGGG+A L ALSL
Sbjct: 224 QKRKGYGKKRECLCGIKNAIPQQNTKAPWYLSQPASLLSED--IAIIGGGIASLFTALSL 281
Query: 110 DKRGVKSTVF 119
KRG K T++
Sbjct: 282 LKRGAKITLY 291
>sp|Q9V2R0|NADB_PYRAB L-aspartate oxidase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=nadB PE=3 SV=1
Length = 464
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 90 DPHVGIIGGGMAGLACALSLDKRGVKSTV 118
D VGI+GGG+AGL A+SL ++GV ++
Sbjct: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSI 31
>sp|Q47XJ9|MNMC_COLP3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=mnmC PE=3 SV=1
Length = 682
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 83 FTAPVSSDP-HVGIIGGGMAGLACALSLDKRGVKSTVF 119
+ P+ + P HV IIGGG+A A +L K+GVK T++
Sbjct: 259 YLRPLITKPQHVSIIGGGIASACAAYALTKQGVKVTLY 296
>sp|Q7VM49|GLPB_HAEDU Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=glpB PE=3 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
V IIGGG+AGL C ++L K+G + + + G
Sbjct: 5 VVIIGGGLAGLTCGIALQKQGKQCAIINNG 34
>sp|Q1MQ25|TRMFO_LAWIP Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=trmFO
PE=3 SV=1
Length = 445
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 92 HVGIIGGGMAGLACALSLDKRGVKSTVFD 120
++ IIGGG++G CAL+L K G T+F+
Sbjct: 5 NIAIIGGGLSGCECALTLAKFGFSVTLFE 33
>sp|Q47861|TR2M_PANAY Tryptophan 2-monooxygenase OS=Pantoea agglomerans pv. gypsophilae
GN=iaaM PE=3 SV=1
Length = 562
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 72 LKKTFAQEQVTFTAPVSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131
L+++ + F + P V IIG G++GL A L + GV+ LGGR
Sbjct: 25 LQQSMVDGHIGFFPTGITPPRVAIIGAGISGLIAATELLRAGVRDITLFEARDRLGGRAW 84
Query: 132 TRMIGPQ 138
+++ P
Sbjct: 85 SQLFDPH 91
>sp|A4WCP1|GLPB_ENT38 Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Enterobacter sp. (strain 638) GN=glpB PE=3 SV=1
Length = 419
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGL 126
IIGGG+AG+ C L L +RG++ + G L
Sbjct: 7 IIGGGLAGILCGLKLTQRGLRCAIVSRGQSAL 38
>sp|Q4QKP6|MNMC_HAEI8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain 86-028NP)
GN=mnmC PE=3 SV=1
Length = 670
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVF 119
V IIGGG+A A+SL KRG K T++
Sbjct: 266 VAIIGGGIASFCAAISLVKRGAKVTIY 292
>sp|Q6LNT9|MNMC_PHOPR tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Photobacterium profundum GN=mnmC PE=3
SV=1
Length = 697
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 83 FTAPVSSDP-HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLI 141
FT ++D V IIGGG+A AL+L +RGV T++ + G G R PL+
Sbjct: 281 FTRTSATDASDVAIIGGGVASATTALALIRRGVNVTLYCADSLPAEGASGNRQGAVYPLL 340
>sp|Q8TZL4|NADB_PYRFU L-aspartate oxidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=nadB PE=3 SV=1
Length = 464
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVF 119
V ++G G+AGL A+SL K+G++ TVF
Sbjct: 3 VAVVGSGLAGLTAAMSLAKKGIEVTVF 29
>sp|A6W0S5|MNMC_MARMS tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Marinomonas sp. (strain MWYL1) GN=mnmC
PE=3 SV=1
Length = 674
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF 142
V ++G G+AG A +L K+G+K V++ GN GG G PQ +++
Sbjct: 267 VLVVGAGLAGANTAYALAKQGIKVEVWEQGNCIAGGASGN----PQGMLY 312
>sp|B0BTN3|GLPB_ACTPJ Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=glpB PE=3 SV=1
Length = 428
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTG 122
V IIGGG+AGL C ++L ++G + + + G
Sbjct: 5 VVIIGGGLAGLTCGIALQEQGKRCVIINNG 34
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,250,576
Number of Sequences: 539616
Number of extensions: 4094238
Number of successful extensions: 14602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 14347
Number of HSP's gapped (non-prelim): 398
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)