Query 047483
Match_columns 253
No_of_seqs 391 out of 2052
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.9 8.3E-22 1.8E-26 163.1 11.9 153 91-251 2-155 (331)
2 COG2081 Predicted flavoprotein 99.7 1.8E-17 3.8E-22 144.8 11.9 150 90-253 3-164 (408)
3 PF03486 HI0933_like: HI0933-l 99.7 4.5E-17 9.7E-22 146.6 11.8 150 91-253 1-163 (409)
4 PF13738 Pyr_redox_3: Pyridine 99.6 6.5E-15 1.4E-19 120.4 10.5 134 94-253 1-135 (203)
5 PLN02172 flavin-containing mon 99.6 2.7E-14 5.9E-19 130.9 13.0 154 90-253 10-170 (461)
6 PRK07236 hypothetical protein; 99.6 1.8E-13 4E-18 122.9 16.9 140 90-253 6-151 (386)
7 PRK11883 protoporphyrinogen ox 99.6 1.3E-13 2.8E-18 125.9 16.0 68 92-162 2-71 (451)
8 PF00743 FMO-like: Flavin-bind 99.5 4.9E-14 1.1E-18 131.0 12.6 137 91-253 2-147 (531)
9 COG1232 HemY Protoporphyrinoge 99.5 1.2E-13 2.5E-18 124.8 14.3 69 92-163 2-72 (444)
10 COG2072 TrkA Predicted flavopr 99.5 1.5E-13 3.3E-18 125.4 14.1 129 89-253 7-141 (443)
11 PRK07364 2-octaprenyl-6-methox 99.5 1.2E-13 2.6E-18 125.1 12.9 34 90-123 18-51 (415)
12 PLN02576 protoporphyrinogen ox 99.5 2.9E-13 6.3E-18 125.5 15.7 69 90-161 12-81 (496)
13 TIGR03329 Phn_aa_oxid putative 99.5 2.6E-13 5.6E-18 124.7 15.2 51 201-253 182-234 (460)
14 KOG1399 Flavin-containing mono 99.5 6.3E-14 1.4E-18 127.0 10.8 138 90-253 6-150 (448)
15 PF01266 DAO: FAD dependent ox 99.5 4.9E-14 1.1E-18 124.0 9.9 52 201-253 146-200 (358)
16 PRK12416 protoporphyrinogen ox 99.5 4.4E-13 9.5E-18 123.3 15.9 55 198-252 222-276 (463)
17 TIGR00562 proto_IX_ox protopor 99.5 3.7E-13 8E-18 123.6 15.2 69 91-162 3-75 (462)
18 PRK05714 2-octaprenyl-3-methyl 99.5 2.1E-13 4.6E-18 123.2 12.8 40 214-253 126-165 (405)
19 COG0654 UbiH 2-polyprenyl-6-me 99.5 1.8E-13 4E-18 123.1 12.0 143 91-253 3-159 (387)
20 PLN02268 probable polyamine ox 99.5 6E-13 1.3E-17 121.4 15.3 68 92-162 2-71 (435)
21 PRK08013 oxidoreductase; Provi 99.5 2.1E-13 4.6E-18 123.1 12.2 44 210-253 122-165 (400)
22 PRK06753 hypothetical protein; 99.5 6E-13 1.3E-17 118.9 14.4 147 92-253 2-149 (373)
23 PRK06847 hypothetical protein; 99.5 5E-13 1.1E-17 119.4 13.5 40 214-253 121-160 (375)
24 PRK08773 2-octaprenyl-3-methyl 99.5 6.1E-13 1.3E-17 119.7 13.8 40 214-253 127-166 (392)
25 PRK11259 solA N-methyltryptoph 99.5 6.4E-13 1.4E-17 118.7 13.8 51 202-253 149-201 (376)
26 PRK07045 putative monooxygenas 99.5 6.2E-13 1.3E-17 119.5 13.5 152 89-253 4-162 (388)
27 PRK08849 2-octaprenyl-3-methyl 99.5 4.6E-13 1E-17 120.3 12.2 42 212-253 123-164 (384)
28 PRK08850 2-octaprenyl-6-methox 99.5 5.2E-13 1.1E-17 120.8 12.3 42 212-253 124-165 (405)
29 TIGR01377 soxA_mon sarcosine o 99.5 1E-12 2.2E-17 117.5 14.1 52 201-253 144-197 (380)
30 PRK01747 mnmC bifunctional tRN 99.5 2.1E-12 4.7E-17 123.7 17.0 53 201-253 407-460 (662)
31 PRK08163 salicylate hydroxylas 99.5 3.7E-13 8.1E-18 121.1 11.1 51 203-253 110-163 (396)
32 TIGR01988 Ubi-OHases Ubiquinon 99.5 5E-13 1.1E-17 119.5 11.8 40 214-253 121-160 (385)
33 PRK07588 hypothetical protein; 99.5 6E-13 1.3E-17 119.7 12.2 50 204-253 105-155 (391)
34 PRK05868 hypothetical protein; 99.5 9.7E-13 2.1E-17 117.8 13.3 51 203-253 106-157 (372)
35 PRK07233 hypothetical protein; 99.5 1.1E-12 2.4E-17 119.1 14.0 66 92-160 1-66 (434)
36 PRK07494 2-octaprenyl-6-methox 99.5 7.5E-13 1.6E-17 118.9 12.6 41 212-253 124-164 (388)
37 PRK05732 2-octaprenyl-6-methox 99.5 7.3E-13 1.6E-17 119.1 12.5 45 209-253 122-166 (395)
38 PF01494 FAD_binding_3: FAD bi 99.5 4E-13 8.8E-18 118.1 10.5 34 91-124 2-35 (356)
39 PRK06184 hypothetical protein; 99.5 1E-12 2.3E-17 122.0 13.6 34 90-123 3-36 (502)
40 PRK09126 hypothetical protein; 99.5 4.5E-13 9.8E-18 120.4 10.8 41 213-253 124-164 (392)
41 PRK11728 hydroxyglutarate oxid 99.5 1.4E-12 3E-17 117.5 13.9 52 201-253 148-201 (393)
42 PRK10157 putative oxidoreducta 99.4 2E-12 4.3E-17 117.8 15.0 147 90-253 5-161 (428)
43 PRK08020 ubiF 2-octaprenyl-3-m 99.4 5.4E-13 1.2E-17 119.9 11.1 44 210-253 123-166 (391)
44 PLN02661 Putative thiazole syn 99.4 4.1E-12 8.9E-17 111.4 16.1 39 89-128 91-130 (357)
45 PRK06183 mhpA 3-(3-hydroxyphen 99.4 1.2E-12 2.6E-17 122.6 13.6 149 90-253 10-171 (538)
46 PRK06617 2-octaprenyl-6-methox 99.4 1E-12 2.2E-17 117.7 12.5 41 212-253 117-157 (374)
47 COG0644 FixC Dehydrogenases (f 99.4 1.5E-12 3.2E-17 117.6 13.5 143 90-253 3-149 (396)
48 TIGR03219 salicylate_mono sali 99.4 1.9E-12 4.1E-17 117.4 14.1 52 202-253 105-156 (414)
49 PRK12409 D-amino acid dehydrog 99.4 3.5E-12 7.6E-17 115.5 15.8 33 91-123 2-34 (410)
50 PRK07190 hypothetical protein; 99.4 1.6E-12 3.5E-17 120.2 13.7 149 90-253 5-162 (487)
51 PRK07333 2-octaprenyl-6-methox 99.4 1.2E-12 2.7E-17 117.9 12.6 40 214-253 125-164 (403)
52 TIGR02032 GG-red-SF geranylger 99.4 2E-12 4.3E-17 111.2 13.4 142 91-253 1-145 (295)
53 PLN02568 polyamine oxidase 99.4 5.1E-12 1.1E-16 117.9 17.0 55 198-252 238-292 (539)
54 PRK06834 hypothetical protein; 99.4 2.5E-12 5.5E-17 118.9 14.6 146 91-253 4-153 (488)
55 COG0579 Predicted dehydrogenas 99.4 1.5E-12 3.3E-17 116.9 12.6 53 201-253 152-208 (429)
56 TIGR01984 UbiH 2-polyprenyl-6- 99.4 1.6E-12 3.4E-17 116.5 12.5 52 202-253 105-159 (382)
57 PRK06185 hypothetical protein; 99.4 1.8E-12 3.8E-17 117.2 12.7 35 89-123 5-39 (407)
58 PRK10015 oxidoreductase; Provi 99.4 1.1E-12 2.3E-17 119.6 11.1 35 90-124 5-39 (429)
59 PRK07608 ubiquinone biosynthes 99.4 2.6E-12 5.6E-17 115.3 13.4 39 214-253 126-164 (388)
60 COG1635 THI4 Ribulose 1,5-bisp 99.4 1.9E-12 4.1E-17 104.9 11.0 131 90-253 30-175 (262)
61 PRK07208 hypothetical protein; 99.4 5.1E-12 1.1E-16 116.7 15.2 73 88-163 2-74 (479)
62 PRK00711 D-amino acid dehydrog 99.4 7.9E-12 1.7E-16 113.2 15.6 52 201-253 200-254 (416)
63 TIGR01292 TRX_reduct thioredox 99.4 4.3E-12 9.3E-17 109.5 13.2 109 91-253 1-109 (300)
64 TIGR00275 flavoprotein, HI0933 99.4 2.4E-12 5.1E-17 116.4 11.4 147 94-253 1-157 (400)
65 PRK06475 salicylate hydroxylas 99.4 3.3E-12 7.1E-17 115.4 11.9 33 91-123 3-35 (400)
66 PRK04176 ribulose-1,5-biphosph 99.4 6.5E-12 1.4E-16 106.9 13.0 38 90-128 25-62 (257)
67 TIGR00292 thiazole biosynthesi 99.4 7.3E-12 1.6E-16 106.3 13.0 38 90-128 21-58 (254)
68 PRK06126 hypothetical protein; 99.4 7.9E-12 1.7E-16 117.2 14.3 35 89-123 6-40 (545)
69 PF13454 NAD_binding_9: FAD-NA 99.4 7.5E-12 1.6E-16 98.6 11.8 147 94-253 1-154 (156)
70 TIGR01373 soxB sarcosine oxida 99.4 7.1E-12 1.5E-16 113.3 13.1 34 90-123 30-65 (407)
71 PRK12266 glpD glycerol-3-phosp 99.4 1.5E-11 3.3E-16 114.3 15.6 37 88-124 4-40 (508)
72 TIGR03364 HpnW_proposed FAD de 99.4 1.7E-11 3.6E-16 109.3 14.6 34 91-124 1-34 (365)
73 PRK08244 hypothetical protein; 99.4 7.3E-12 1.6E-16 116.1 12.0 145 91-253 3-156 (493)
74 PLN02463 lycopene beta cyclase 99.3 1.6E-11 3.6E-16 112.1 14.0 136 90-253 28-166 (447)
75 PRK06996 hypothetical protein; 99.3 1.1E-11 2.4E-16 111.9 12.7 40 214-253 129-171 (398)
76 TIGR01989 COQ6 Ubiquinone bios 99.3 6.8E-12 1.5E-16 114.7 11.5 40 214-253 134-180 (437)
77 PRK08132 FAD-dependent oxidore 99.3 1.4E-11 3.1E-16 115.6 13.8 144 89-253 22-182 (547)
78 PRK13369 glycerol-3-phosphate 99.3 1.2E-11 2.6E-16 114.9 13.0 38 87-124 3-40 (502)
79 PLN02676 polyamine oxidase 99.3 4.5E-11 9.7E-16 110.6 15.8 54 199-252 221-282 (487)
80 COG1233 Phytoene dehydrogenase 99.3 6.5E-12 1.4E-16 116.2 10.2 54 90-146 3-56 (487)
81 PRK11101 glpA sn-glycerol-3-ph 99.3 3E-11 6.5E-16 113.3 14.7 35 90-124 6-40 (546)
82 COG1231 Monoamine oxidase [Ami 99.3 2.8E-11 6.1E-16 107.8 13.3 53 199-252 206-258 (450)
83 PRK11445 putative oxidoreducta 99.3 1.5E-11 3.3E-16 109.2 11.6 40 214-253 112-154 (351)
84 PRK07538 hypothetical protein; 99.3 2E-11 4.4E-16 110.7 12.6 32 92-123 2-33 (413)
85 PF01946 Thi4: Thi4 family; PD 99.3 1.2E-11 2.7E-16 100.5 9.6 129 91-253 18-162 (230)
86 PRK08274 tricarballylate dehyd 99.3 2.2E-11 4.7E-16 112.2 12.4 36 88-123 2-37 (466)
87 PTZ00383 malate:quinone oxidor 99.3 1.6E-11 3.5E-16 113.3 11.5 38 215-253 232-270 (497)
88 PF05834 Lycopene_cycl: Lycope 99.3 2.6E-11 5.5E-16 108.7 12.5 136 92-253 1-139 (374)
89 TIGR02023 BchP-ChlP geranylger 99.3 2.7E-11 5.9E-16 109.0 12.6 32 91-122 1-32 (388)
90 PRK08243 4-hydroxybenzoate 3-m 99.3 3.5E-11 7.5E-16 108.4 13.3 33 91-123 3-35 (392)
91 TIGR01320 mal_quin_oxido malat 99.3 2.4E-11 5.1E-16 112.2 12.4 53 201-253 177-237 (483)
92 PLN02927 antheraxanthin epoxid 99.3 4.4E-11 9.6E-16 113.3 14.0 52 202-253 194-245 (668)
93 TIGR02734 crtI_fam phytoene de 99.3 3.4E-11 7.4E-16 111.9 12.5 55 199-253 216-273 (502)
94 PF13450 NAD_binding_8: NAD(P) 99.3 1.1E-11 2.5E-16 83.7 6.8 65 95-162 1-67 (68)
95 COG0492 TrxB Thioredoxin reduc 99.3 6.4E-11 1.4E-15 102.9 12.8 107 90-253 3-112 (305)
96 PRK13339 malate:quinone oxidor 99.3 1.4E-10 3.1E-15 106.9 15.3 32 90-121 6-39 (497)
97 TIGR01790 carotene-cycl lycope 99.3 9.5E-11 2.1E-15 105.3 13.8 135 92-253 1-138 (388)
98 PRK15317 alkyl hydroperoxide r 99.3 6.5E-11 1.4E-15 110.4 12.8 110 89-253 210-319 (517)
99 PRK06481 fumarate reductase fl 99.2 1.9E-10 4.2E-15 107.0 15.4 38 90-128 61-98 (506)
100 COG2907 Predicted NAD/FAD-bind 99.2 8E-11 1.7E-15 101.3 11.7 53 199-252 217-269 (447)
101 PLN02529 lysine-specific histo 99.2 3E-10 6.6E-15 108.9 16.5 60 90-150 160-221 (738)
102 COG0665 DadA Glycine/D-amino a 99.2 2.2E-10 4.9E-15 102.5 14.3 35 89-123 3-37 (387)
103 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 1.2E-10 2.6E-15 104.9 12.6 33 91-123 3-35 (390)
104 KOG0029 Amine oxidase [Seconda 99.2 7.9E-11 1.7E-15 108.6 11.2 59 90-150 15-73 (501)
105 PRK05192 tRNA uridine 5-carbox 99.2 1.4E-10 3E-15 108.5 12.8 39 90-128 4-42 (618)
106 PLN02697 lycopene epsilon cycl 99.2 1.6E-10 3.4E-15 107.5 13.2 136 89-253 107-245 (529)
107 KOG0685 Flavin-containing amin 99.2 1.6E-10 3.4E-15 103.2 12.3 57 91-150 22-79 (498)
108 PF12831 FAD_oxidored: FAD dep 99.2 1.5E-11 3.3E-16 112.0 5.9 142 92-253 1-147 (428)
109 TIGR03140 AhpF alkyl hydropero 99.2 1.8E-10 3.9E-15 107.4 13.0 110 89-253 211-320 (515)
110 TIGR02730 carot_isom carotene 99.2 1.3E-10 2.7E-15 107.9 11.7 55 199-253 226-283 (493)
111 PLN00093 geranylgeranyl diphos 99.2 1.6E-10 3.5E-15 105.9 12.3 33 91-123 40-72 (450)
112 PRK08294 phenol 2-monooxygenas 99.2 1.5E-10 3.2E-15 110.3 12.4 36 88-123 30-66 (634)
113 PRK05257 malate:quinone oxidor 99.2 2E-10 4.3E-15 106.3 12.9 34 90-123 5-40 (494)
114 PRK09897 hypothetical protein; 99.2 2.2E-10 4.7E-15 106.6 13.0 154 91-253 2-163 (534)
115 PF00890 FAD_binding_2: FAD bi 99.2 2.4E-10 5.2E-15 103.7 12.7 36 92-128 1-36 (417)
116 PLN03000 amine oxidase 99.2 6E-10 1.3E-14 107.7 15.8 60 90-150 184-245 (881)
117 PLN02328 lysine-specific histo 99.2 3.8E-10 8.2E-15 108.8 14.2 51 198-252 433-483 (808)
118 PLN02985 squalene monooxygenas 99.2 5.5E-10 1.2E-14 104.0 15.0 35 89-123 42-76 (514)
119 TIGR01789 lycopene_cycl lycope 99.2 1.9E-10 4.2E-15 102.9 11.1 133 92-253 1-135 (370)
120 PRK06175 L-aspartate oxidase; 99.2 2.6E-10 5.7E-15 104.1 12.2 34 90-124 4-37 (433)
121 TIGR03143 AhpF_homolog putativ 99.2 3.1E-10 6.7E-15 106.7 12.8 105 90-253 4-111 (555)
122 PRK10262 thioredoxin reductase 99.2 4.3E-10 9.4E-15 98.6 12.8 109 90-253 6-114 (321)
123 TIGR01813 flavo_cyto_c flavocy 99.2 5.3E-10 1.2E-14 102.2 13.9 36 92-128 1-37 (439)
124 TIGR02028 ChlP geranylgeranyl 99.1 7.1E-10 1.5E-14 100.2 13.6 33 91-123 1-33 (398)
125 PRK08401 L-aspartate oxidase; 99.1 4.7E-10 1E-14 103.4 12.1 33 91-123 2-34 (466)
126 PLN02612 phytoene desaturase 99.1 2.2E-09 4.7E-14 101.2 16.3 72 89-162 92-163 (567)
127 PTZ00367 squalene epoxidase; P 99.1 7E-10 1.5E-14 104.1 12.8 34 90-123 33-66 (567)
128 PLN02464 glycerol-3-phosphate 99.1 7.5E-10 1.6E-14 105.3 13.1 35 90-124 71-105 (627)
129 PRK06854 adenylylsulfate reduc 99.1 7.7E-10 1.7E-14 105.0 13.0 34 91-124 12-47 (608)
130 PRK07804 L-aspartate oxidase; 99.1 6.6E-10 1.4E-14 104.2 12.3 35 90-124 16-50 (541)
131 PTZ00363 rab-GDP dissociation 99.1 8.3E-10 1.8E-14 100.7 12.6 44 88-132 2-45 (443)
132 PRK09231 fumarate reductase fl 99.1 1.1E-09 2.3E-14 103.5 13.0 33 91-123 5-39 (582)
133 TIGR00551 nadB L-aspartate oxi 99.1 8.6E-10 1.9E-14 102.2 12.1 33 91-124 3-35 (488)
134 PF01134 GIDA: Glucose inhibit 99.1 3.7E-10 8E-15 100.5 9.1 146 92-253 1-149 (392)
135 TIGR01176 fum_red_Fp fumarate 99.1 1.5E-09 3.3E-14 102.4 13.5 34 91-124 4-39 (580)
136 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.1E-09 2.3E-14 103.4 12.4 32 92-123 1-32 (566)
137 PRK05976 dihydrolipoamide dehy 99.1 1.3E-09 2.9E-14 100.5 12.7 42 89-132 3-44 (472)
138 KOG2614 Kynurenine 3-monooxyge 99.1 6.5E-10 1.4E-14 97.9 10.0 34 91-124 3-36 (420)
139 PRK07121 hypothetical protein; 99.1 2.5E-09 5.5E-14 99.2 14.1 38 90-128 20-57 (492)
140 KOG2820 FAD-dependent oxidored 99.1 1.3E-09 2.9E-14 93.5 11.1 36 88-123 5-40 (399)
141 PRK08010 pyridine nucleotide-d 99.1 1.3E-09 2.9E-14 99.7 11.7 42 90-131 3-44 (441)
142 TIGR01424 gluta_reduc_2 glutat 99.1 1.2E-09 2.7E-14 100.1 11.4 41 90-132 2-42 (446)
143 PRK12834 putative FAD-binding 99.1 3E-09 6.5E-14 100.0 14.2 41 89-129 3-44 (549)
144 PRK08071 L-aspartate oxidase; 99.1 1.5E-09 3.3E-14 101.0 12.0 34 90-124 3-36 (510)
145 PRK05945 sdhA succinate dehydr 99.1 6.2E-10 1.3E-14 105.1 9.5 34 90-123 3-38 (575)
146 PRK13977 myosin-cross-reactive 99.1 5.1E-09 1.1E-13 97.3 14.9 56 91-147 23-82 (576)
147 PRK06452 sdhA succinate dehydr 99.0 2.6E-09 5.6E-14 100.7 13.0 34 90-123 5-38 (566)
148 PRK06263 sdhA succinate dehydr 99.0 1.2E-09 2.6E-14 102.5 10.7 38 90-128 7-44 (543)
149 PRK06370 mercuric reductase; V 99.0 2.4E-09 5.1E-14 98.7 12.3 43 88-132 3-45 (463)
150 PRK05249 soluble pyridine nucl 99.0 1.1E-09 2.3E-14 100.8 9.8 41 90-131 5-45 (461)
151 COG0578 GlpA Glycerol-3-phosph 99.0 4.9E-09 1.1E-13 96.4 13.7 39 89-127 11-49 (532)
152 PRK06467 dihydrolipoamide dehy 99.0 3.4E-09 7.4E-14 97.8 12.7 41 90-131 4-44 (471)
153 PRK06069 sdhA succinate dehydr 99.0 5.6E-09 1.2E-13 98.7 14.4 34 90-123 5-41 (577)
154 PRK06116 glutathione reductase 99.0 2.6E-09 5.6E-14 98.0 11.7 40 90-131 4-43 (450)
155 PRK07803 sdhA succinate dehydr 99.0 2E-09 4.4E-14 102.5 11.3 34 90-123 8-41 (626)
156 PRK14694 putative mercuric red 99.0 4E-09 8.6E-14 97.3 12.4 41 90-132 6-46 (468)
157 PRK07251 pyridine nucleotide-d 99.0 2.8E-09 6.1E-14 97.5 10.8 41 90-130 3-43 (438)
158 PRK07573 sdhA succinate dehydr 99.0 4.4E-09 9.4E-14 100.4 12.4 34 90-123 35-68 (640)
159 TIGR02485 CobZ_N-term precorri 99.0 4.3E-09 9.3E-14 96.1 11.9 30 95-124 1-30 (432)
160 PRK09078 sdhA succinate dehydr 99.0 5.9E-09 1.3E-13 98.9 13.0 34 90-123 12-45 (598)
161 PRK07057 sdhA succinate dehydr 99.0 9.7E-09 2.1E-13 97.3 14.3 34 90-123 12-45 (591)
162 TIGR01421 gluta_reduc_1 glutat 99.0 5.2E-09 1.1E-13 96.1 12.0 41 90-132 2-42 (450)
163 PRK08626 fumarate reductase fl 99.0 3.5E-09 7.5E-14 101.3 11.0 35 90-124 5-39 (657)
164 PRK06416 dihydrolipoamide dehy 99.0 6.5E-09 1.4E-13 95.7 12.4 41 90-132 4-44 (462)
165 PRK08958 sdhA succinate dehydr 99.0 4.3E-09 9.2E-14 99.6 11.3 35 90-124 7-41 (588)
166 PRK08275 putative oxidoreducta 99.0 6.5E-09 1.4E-13 97.8 11.9 34 91-124 10-45 (554)
167 PRK07395 L-aspartate oxidase; 98.9 5.4E-09 1.2E-13 98.2 11.0 34 90-124 9-42 (553)
168 PLN02976 amine oxidase 98.9 1.2E-08 2.5E-13 102.4 13.7 43 90-133 693-735 (1713)
169 PLN02815 L-aspartate oxidase 98.9 9.7E-09 2.1E-13 97.1 12.7 34 90-124 29-62 (594)
170 PLN00128 Succinate dehydrogena 98.9 7.8E-09 1.7E-13 98.5 12.1 33 91-123 51-83 (635)
171 PRK06115 dihydrolipoamide dehy 98.9 6.2E-09 1.3E-13 96.0 11.1 42 90-132 3-44 (466)
172 PTZ00139 Succinate dehydrogena 98.9 9.2E-09 2E-13 97.8 12.5 35 90-124 29-63 (617)
173 PRK08641 sdhA succinate dehydr 98.9 7.4E-09 1.6E-13 98.0 11.7 35 90-124 3-37 (589)
174 PRK07818 dihydrolipoamide dehy 98.9 3.2E-09 7E-14 97.8 9.1 41 90-132 4-44 (466)
175 TIGR01350 lipoamide_DH dihydro 98.9 1.2E-08 2.6E-13 93.8 12.8 40 91-132 2-41 (461)
176 PF01593 Amino_oxidase: Flavin 98.9 7.6E-09 1.6E-13 92.8 10.9 62 100-162 1-62 (450)
177 PRK06327 dihydrolipoamide dehy 98.9 1.2E-08 2.5E-13 94.4 12.1 32 90-121 4-35 (475)
178 PF07992 Pyr_redox_2: Pyridine 98.9 5.7E-09 1.2E-13 84.9 8.8 32 92-123 1-32 (201)
179 KOG2844 Dimethylglycine dehydr 98.9 1.5E-08 3.3E-13 93.8 12.2 53 200-253 185-240 (856)
180 PF00070 Pyr_redox: Pyridine n 98.9 1.2E-08 2.7E-13 71.0 9.0 32 92-123 1-32 (80)
181 PRK07512 L-aspartate oxidase; 98.9 7.3E-09 1.6E-13 96.6 10.0 33 90-124 9-41 (513)
182 PRK08205 sdhA succinate dehydr 98.9 8.3E-09 1.8E-13 97.6 10.6 33 90-123 5-37 (583)
183 PRK06134 putative FAD-binding 98.9 2.9E-08 6.3E-13 93.9 13.6 39 90-129 12-50 (581)
184 PF13434 K_oxygenase: L-lysine 98.9 3.4E-09 7.3E-14 93.8 6.7 140 91-253 3-156 (341)
185 TIGR00136 gidA glucose-inhibit 98.9 3E-08 6.4E-13 92.9 13.2 33 91-123 1-33 (617)
186 PRK12837 3-ketosteroid-delta-1 98.9 2.6E-08 5.7E-13 92.9 12.9 37 90-128 7-43 (513)
187 PRK12842 putative succinate de 98.9 4.8E-08 1E-12 92.4 14.7 38 90-128 9-46 (574)
188 PRK12779 putative bifunctional 98.9 8.9E-09 1.9E-13 101.9 9.8 40 90-130 306-345 (944)
189 PRK12839 hypothetical protein; 98.9 4.6E-08 1E-12 92.3 14.1 40 89-129 7-46 (572)
190 PRK09077 L-aspartate oxidase; 98.9 2.8E-08 6E-13 93.2 12.5 34 90-124 8-41 (536)
191 PF06039 Mqo: Malate:quinone o 98.9 6.1E-08 1.3E-12 87.2 13.9 53 201-253 180-241 (488)
192 TIGR01811 sdhA_Bsu succinate d 98.8 2.9E-08 6.2E-13 94.3 12.1 31 93-123 1-31 (603)
193 COG3349 Uncharacterized conser 98.8 5.1E-09 1.1E-13 95.0 6.3 69 92-162 2-70 (485)
194 PTZ00058 glutathione reductase 98.8 4.3E-08 9.4E-13 92.1 12.7 42 90-133 48-89 (561)
195 PRK13748 putative mercuric red 98.8 2.7E-08 5.9E-13 93.8 11.4 41 90-132 98-138 (561)
196 PLN02546 glutathione reductase 98.8 1.1E-07 2.4E-12 89.3 15.4 32 90-121 79-110 (558)
197 PRK14727 putative mercuric red 98.8 4.5E-08 9.7E-13 90.6 12.7 42 90-132 16-57 (479)
198 PTZ00306 NADH-dependent fumara 98.8 5.5E-08 1.2E-12 98.6 14.3 40 89-129 408-447 (1167)
199 PRK09564 coenzyme A disulfide 98.8 2.3E-08 4.9E-13 91.5 10.6 32 92-123 2-35 (444)
200 TIGR02733 desat_CrtD C-3',4' d 98.8 7.7E-09 1.7E-13 95.9 7.5 57 91-150 2-58 (492)
201 KOG2415 Electron transfer flav 98.8 3.5E-08 7.6E-13 87.1 10.9 146 88-253 74-253 (621)
202 TIGR01372 soxA sarcosine oxida 98.8 3.9E-08 8.4E-13 98.3 12.6 40 90-130 163-202 (985)
203 PLN02507 glutathione reductase 98.8 4.1E-08 8.9E-13 91.3 11.9 32 90-121 25-56 (499)
204 PRK08255 salicylyl-CoA 5-hydro 98.8 1.1E-08 2.3E-13 99.7 7.9 32 92-123 2-35 (765)
205 PRK12844 3-ketosteroid-delta-1 98.8 7.3E-08 1.6E-12 90.8 13.2 39 90-129 6-44 (557)
206 PRK12835 3-ketosteroid-delta-1 98.8 1.1E-07 2.3E-12 90.1 14.1 38 90-128 11-48 (584)
207 TIGR02061 aprA adenosine phosp 98.8 4.6E-08 9.9E-13 92.7 11.5 32 92-123 1-36 (614)
208 PRK12843 putative FAD-binding 98.8 7.8E-08 1.7E-12 91.0 12.7 40 90-130 16-55 (578)
209 TIGR02731 phytoene_desat phyto 98.8 1.5E-08 3.2E-13 93.0 7.5 70 92-163 1-70 (453)
210 PRK12845 3-ketosteroid-delta-1 98.8 1E-07 2.2E-12 89.8 13.0 39 90-130 16-54 (564)
211 PRK07845 flavoprotein disulfid 98.8 9.4E-08 2E-12 88.2 12.6 40 91-132 2-41 (466)
212 PF04820 Trp_halogenase: Trypt 98.8 3.2E-08 6.9E-13 90.9 9.3 51 201-253 156-208 (454)
213 PRK05335 tRNA (uracil-5-)-meth 98.8 4.4E-08 9.5E-13 88.3 9.6 33 91-123 3-35 (436)
214 PRK09754 phenylpropionate diox 98.8 3.9E-08 8.4E-13 88.8 9.2 33 91-123 4-38 (396)
215 KOG2404 Fumarate reductase, fl 98.8 4.6E-08 1E-12 83.8 8.9 37 92-129 11-47 (477)
216 PRK04965 NADH:flavorubredoxin 98.7 9.5E-08 2.1E-12 85.7 11.6 96 90-253 141-236 (377)
217 PRK09853 putative selenate red 98.7 4.4E-08 9.5E-13 96.5 10.0 41 89-130 538-578 (1019)
218 PRK06292 dihydrolipoamide dehy 98.7 7.3E-08 1.6E-12 88.7 10.8 40 90-131 3-42 (460)
219 PRK07843 3-ketosteroid-delta-1 98.7 2.3E-07 4.9E-12 87.5 14.2 38 90-128 7-44 (557)
220 TIGR02053 MerA mercuric reduct 98.7 2.6E-08 5.6E-13 91.7 7.6 40 91-132 1-40 (463)
221 PRK13512 coenzyme A disulfide 98.7 1.2E-07 2.6E-12 86.7 11.9 32 92-123 3-36 (438)
222 PRK12831 putative oxidoreducta 98.7 4E-08 8.7E-13 90.5 8.7 41 89-130 139-179 (464)
223 TIGR01423 trypano_reduc trypan 98.7 2.2E-07 4.8E-12 86.1 13.3 33 90-122 3-36 (486)
224 COG0562 Glf UDP-galactopyranos 98.7 4.7E-08 1E-12 83.7 7.8 71 91-162 2-73 (374)
225 TIGR02732 zeta_caro_desat caro 98.7 2.8E-08 6.1E-13 91.8 6.9 69 92-162 1-69 (474)
226 COG1249 Lpd Pyruvate/2-oxoglut 98.7 1.3E-07 2.8E-12 86.4 11.1 94 91-253 174-269 (454)
227 PRK06912 acoL dihydrolipoamide 98.7 2.3E-07 5E-12 85.4 12.9 40 92-133 2-41 (458)
228 COG4529 Uncharacterized protei 98.7 4.4E-08 9.5E-13 88.3 7.7 153 91-253 2-161 (474)
229 PTZ00318 NADH dehydrogenase-li 98.7 1.3E-07 2.8E-12 86.3 11.0 34 90-123 10-43 (424)
230 COG1053 SdhA Succinate dehydro 98.7 6E-08 1.3E-12 90.9 8.8 36 89-124 5-40 (562)
231 PRK04965 NADH:flavorubredoxin 98.7 2E-07 4.3E-12 83.7 11.9 33 91-123 3-37 (377)
232 PRK13800 putative oxidoreducta 98.7 3.1E-07 6.6E-12 91.1 13.7 34 90-123 13-46 (897)
233 PRK09754 phenylpropionate diox 98.7 2.5E-07 5.5E-12 83.5 11.9 95 90-253 144-238 (396)
234 PRK12778 putative bifunctional 98.7 4.9E-08 1.1E-12 95.0 7.6 41 89-130 430-470 (752)
235 TIGR00031 UDP-GALP_mutase UDP- 98.7 6E-08 1.3E-12 86.7 7.5 69 91-161 2-70 (377)
236 PRK07846 mycothione reductase; 98.7 2.2E-07 4.7E-12 85.4 11.3 93 91-253 167-259 (451)
237 TIGR03315 Se_ygfK putative sel 98.7 1E-07 2.3E-12 94.1 9.5 40 90-130 537-576 (1012)
238 PRK06416 dihydrolipoamide dehy 98.6 2.5E-07 5.4E-12 85.2 11.1 94 91-253 173-269 (462)
239 PLN02852 ferredoxin-NADP+ redu 98.6 1.2E-07 2.5E-12 87.6 8.8 39 91-130 27-67 (491)
240 COG3573 Predicted oxidoreducta 98.6 3.9E-07 8.5E-12 78.7 11.4 39 90-128 5-44 (552)
241 COG0029 NadB Aspartate oxidase 98.6 1.2E-07 2.6E-12 85.6 8.5 32 92-124 9-40 (518)
242 PRK05249 soluble pyridine nucl 98.6 3.6E-07 7.8E-12 84.1 11.6 94 91-253 176-269 (461)
243 KOG2665 Predicted FAD-dependen 98.6 1.5E-07 3.2E-12 80.5 8.2 34 90-123 48-83 (453)
244 PTZ00052 thioredoxin reductase 98.6 5.1E-07 1.1E-11 84.0 12.7 32 91-122 6-37 (499)
245 TIGR01350 lipoamide_DH dihydro 98.6 3.1E-07 6.8E-12 84.5 11.2 93 91-253 171-266 (461)
246 COG1249 Lpd Pyruvate/2-oxoglut 98.6 1.2E-07 2.6E-12 86.6 8.2 44 89-133 3-46 (454)
247 TIGR00137 gid_trmFO tRNA:m(5)U 98.6 2.2E-07 4.7E-12 84.1 9.7 33 91-123 1-33 (433)
248 TIGR03169 Nterm_to_SelD pyridi 98.6 1.4E-07 3E-12 84.1 8.4 32 92-123 1-35 (364)
249 PRK12775 putative trifunctiona 98.6 9.7E-08 2.1E-12 95.3 8.0 40 90-130 430-469 (1006)
250 TIGR01316 gltA glutamate synth 98.6 9.9E-08 2.2E-12 87.6 7.3 41 89-130 132-172 (449)
251 KOG1298 Squalene monooxygenase 98.6 2.8E-07 6.1E-12 80.7 9.6 34 90-123 45-78 (509)
252 COG0445 GidA Flavin-dependent 98.6 1.3E-07 2.8E-12 86.3 7.7 145 90-253 4-155 (621)
253 PRK06116 glutathione reductase 98.6 5.9E-07 1.3E-11 82.5 12.3 94 91-253 168-262 (450)
254 PRK12770 putative glutamate sy 98.6 1.9E-07 4.1E-12 83.1 8.7 38 91-129 19-56 (352)
255 PRK11749 dihydropyrimidine deh 98.6 1.7E-07 3.8E-12 86.2 8.5 39 90-129 140-178 (457)
256 TIGR01438 TGR thioredoxin and 98.6 7.2E-07 1.6E-11 82.7 12.6 32 91-122 3-34 (484)
257 PRK07251 pyridine nucleotide-d 98.6 5.7E-07 1.2E-11 82.3 11.6 93 91-253 158-250 (438)
258 PLN02487 zeta-carotene desatur 98.6 1.4E-07 3.1E-12 88.6 7.3 70 91-162 76-145 (569)
259 TIGR03378 glycerol3P_GlpB glyc 98.6 1.1E-06 2.3E-11 79.4 12.6 33 91-123 1-33 (419)
260 COG2509 Uncharacterized FAD-de 98.6 1.3E-06 2.8E-11 78.3 12.5 61 193-253 164-227 (486)
261 PTZ00153 lipoamide dehydrogena 98.5 8.3E-08 1.8E-12 91.6 5.4 44 90-133 116-159 (659)
262 PLN02507 glutathione reductase 98.5 7.6E-07 1.6E-11 82.9 11.6 94 91-253 204-297 (499)
263 PRK14989 nitrite reductase sub 98.5 3.9E-07 8.5E-12 89.5 10.1 38 214-253 73-110 (847)
264 KOG1276 Protoporphyrinogen oxi 98.5 1.6E-07 3.6E-12 83.2 6.7 71 91-163 12-87 (491)
265 PRK07845 flavoprotein disulfid 98.5 7.7E-07 1.7E-11 82.1 11.6 94 91-253 178-271 (466)
266 TIGR01424 gluta_reduc_2 glutat 98.5 7.9E-07 1.7E-11 81.6 11.4 94 91-253 167-260 (446)
267 TIGR01421 gluta_reduc_1 glutat 98.5 7.4E-07 1.6E-11 81.9 11.2 93 91-253 167-262 (450)
268 TIGR03452 mycothione_red mycot 98.5 8E-07 1.7E-11 81.7 11.4 93 91-253 170-262 (452)
269 PRK07818 dihydrolipoamide dehy 98.5 1.2E-06 2.7E-11 80.8 12.3 93 91-253 173-270 (466)
270 PRK06912 acoL dihydrolipoamide 98.5 1E-06 2.2E-11 81.2 11.7 93 91-253 171-265 (458)
271 TIGR02053 MerA mercuric reduct 98.5 8.2E-07 1.8E-11 81.8 10.9 94 91-253 167-263 (463)
272 TIGR03197 MnmC_Cterm tRNA U-34 98.5 9.9E-07 2.2E-11 79.2 11.0 54 200-253 133-187 (381)
273 KOG0404 Thioredoxin reductase 98.5 9.1E-07 2E-11 72.4 9.3 108 91-253 9-121 (322)
274 PRK07846 mycothione reductase; 98.5 4.3E-07 9.3E-12 83.5 8.5 39 91-133 2-40 (451)
275 TIGR03452 mycothione_red mycot 98.5 2.9E-07 6.2E-12 84.7 7.2 39 91-133 3-41 (452)
276 PRK06370 mercuric reductase; V 98.5 1.4E-06 3E-11 80.3 11.7 94 91-253 172-268 (463)
277 PRK12810 gltD glutamate syntha 98.5 3.2E-07 6.9E-12 84.8 7.3 41 89-130 142-182 (471)
278 TIGR02374 nitri_red_nirB nitri 98.5 4.4E-07 9.5E-12 88.8 8.3 38 214-253 68-105 (785)
279 TIGR01318 gltD_gamma_fam gluta 98.5 5.5E-07 1.2E-11 83.1 8.2 41 89-130 140-180 (467)
280 PRK06115 dihydrolipoamide dehy 98.5 1.9E-06 4.2E-11 79.5 11.7 93 91-253 175-273 (466)
281 PRK05976 dihydrolipoamide dehy 98.4 1.6E-06 3.4E-11 80.2 11.0 33 91-123 181-213 (472)
282 PRK08010 pyridine nucleotide-d 98.4 2.5E-06 5.3E-11 78.2 12.2 92 91-253 159-251 (441)
283 PRK06327 dihydrolipoamide dehy 98.4 2.6E-06 5.7E-11 78.8 12.4 94 91-253 184-281 (475)
284 PRK12814 putative NADPH-depend 98.4 5.2E-07 1.1E-11 86.6 7.8 40 90-130 193-232 (652)
285 KOG1335 Dihydrolipoamide dehyd 98.4 3.3E-06 7.2E-11 74.1 11.5 42 90-132 39-80 (506)
286 TIGR02374 nitri_red_nirB nitri 98.4 2E-06 4.4E-11 84.2 11.0 95 91-253 141-235 (785)
287 TIGR03862 flavo_PP4765 unchara 98.4 1.3E-06 2.8E-11 78.1 8.9 62 181-253 74-138 (376)
288 PTZ00052 thioredoxin reductase 98.4 3.1E-06 6.7E-11 78.8 11.1 92 91-253 183-275 (499)
289 PRK14727 putative mercuric red 98.4 3.4E-06 7.3E-11 78.2 11.3 92 91-253 189-280 (479)
290 PRK13748 putative mercuric red 98.4 3.6E-06 7.7E-11 79.5 11.5 91 91-253 271-362 (561)
291 PRK12809 putative oxidoreducta 98.4 8.7E-07 1.9E-11 84.9 7.4 40 90-130 310-349 (639)
292 PRK14694 putative mercuric red 98.4 4.3E-06 9.4E-11 77.2 11.5 92 91-253 179-270 (468)
293 PRK06467 dihydrolipoamide dehy 98.3 3.2E-06 7E-11 78.1 10.5 92 91-253 175-271 (471)
294 COG1252 Ndh NADH dehydrogenase 98.3 2.3E-06 5E-11 76.8 9.1 33 91-123 4-38 (405)
295 TIGR01423 trypano_reduc trypan 98.3 4.5E-06 9.8E-11 77.4 11.3 93 91-253 188-285 (486)
296 TIGR01317 GOGAT_sm_gam glutama 98.3 1.7E-06 3.7E-11 80.3 8.5 40 90-130 143-182 (485)
297 PRK09564 coenzyme A disulfide 98.3 4.8E-06 1E-10 76.2 11.3 94 91-253 150-243 (444)
298 TIGR03467 HpnE squalene-associ 98.3 3.8E-06 8.2E-11 75.8 10.4 58 104-162 1-58 (419)
299 TIGR01438 TGR thioredoxin and 98.3 4E-06 8.6E-11 77.8 10.7 92 91-253 181-276 (484)
300 TIGR03385 CoA_CoA_reduc CoA-di 98.3 4E-06 8.7E-11 76.4 10.5 93 91-253 138-230 (427)
301 KOG2960 Protein involved in th 98.3 3.8E-07 8.2E-12 74.0 2.8 42 89-130 75-118 (328)
302 PRK14989 nitrite reductase sub 98.3 6E-06 1.3E-10 81.3 11.5 95 91-253 146-242 (847)
303 PTZ00058 glutathione reductase 98.3 6.7E-06 1.5E-10 77.4 11.4 93 91-253 238-333 (561)
304 TIGR02352 thiamin_ThiO glycine 98.3 6.8E-06 1.5E-10 72.0 10.8 53 201-253 136-190 (337)
305 PTZ00153 lipoamide dehydrogena 98.3 7.2E-06 1.6E-10 78.5 11.1 33 91-123 313-345 (659)
306 COG3486 IucD Lysine/ornithine 98.3 2.7E-06 6E-11 75.2 7.5 145 88-253 3-154 (436)
307 KOG3855 Monooxygenase involved 98.3 8.1E-06 1.7E-10 72.3 10.4 47 207-253 160-214 (481)
308 PRK13512 coenzyme A disulfide 98.3 5.8E-06 1.3E-10 75.8 9.9 33 91-123 149-181 (438)
309 PRK06292 dihydrolipoamide dehy 98.2 9.9E-06 2.1E-10 74.6 11.2 33 91-123 170-202 (460)
310 PRK13984 putative oxidoreducta 98.2 3.3E-06 7.2E-11 80.4 8.3 40 89-129 282-321 (604)
311 KOG2853 Possible oxidoreductas 98.2 2.6E-05 5.7E-10 67.7 12.4 36 88-123 84-123 (509)
312 COG1148 HdrA Heterodisulfide r 98.2 1.3E-06 2.9E-11 78.6 4.7 40 91-131 125-164 (622)
313 COG0446 HcaD Uncharacterized N 98.2 8.4E-06 1.8E-10 73.2 9.6 96 90-253 136-234 (415)
314 COG3634 AhpF Alkyl hydroperoxi 98.2 3.6E-06 7.9E-11 73.1 6.2 110 89-253 210-322 (520)
315 COG1252 Ndh NADH dehydrogenase 98.2 6.3E-06 1.4E-10 74.0 8.0 47 202-253 212-259 (405)
316 PF00732 GMC_oxred_N: GMC oxid 98.2 1.9E-06 4.1E-11 74.5 4.1 34 91-124 1-35 (296)
317 PLN02546 glutathione reductase 98.1 2E-05 4.3E-10 74.3 11.1 33 91-123 253-285 (558)
318 PTZ00318 NADH dehydrogenase-li 98.1 1.8E-05 4E-10 72.1 10.5 36 214-253 242-277 (424)
319 PF13434 K_oxygenase: L-lysine 98.1 6.2E-06 1.3E-10 73.1 6.8 40 214-253 293-338 (341)
320 PRK12769 putative oxidoreducta 98.1 4.1E-06 8.9E-11 80.5 5.6 41 89-130 326-366 (654)
321 KOG0042 Glycerol-3-phosphate d 98.1 1.7E-06 3.8E-11 78.8 2.7 41 90-130 67-107 (680)
322 KOG2852 Possible oxidoreductas 98.1 9.4E-06 2E-10 68.9 6.8 39 90-129 10-54 (380)
323 PRK02106 choline dehydrogenase 98.0 7E-06 1.5E-10 77.5 5.3 35 89-123 4-39 (560)
324 PF06100 Strep_67kDa_ant: Stre 98.0 9.1E-05 2E-09 67.6 12.1 40 91-131 3-46 (500)
325 TIGR03140 AhpF alkyl hydropero 98.0 6.9E-05 1.5E-09 70.1 11.8 33 91-123 353-385 (515)
326 TIGR02462 pyranose_ox pyranose 98.0 1.7E-05 3.7E-10 74.2 6.9 39 91-130 1-39 (544)
327 PRK06567 putative bifunctional 98.0 9.8E-06 2.1E-10 79.6 5.4 34 89-122 382-415 (1028)
328 PTZ00188 adrenodoxin reductase 97.9 2E-05 4.3E-10 72.5 5.9 39 91-130 40-79 (506)
329 PRK05329 anaerobic glycerol-3- 97.9 1.4E-05 3E-10 72.7 4.9 33 91-123 3-35 (422)
330 COG3075 GlpB Anaerobic glycero 97.9 1.5E-05 3.2E-10 68.9 4.7 34 90-123 2-35 (421)
331 TIGR01292 TRX_reduct thioredox 97.9 0.00022 4.8E-09 61.3 11.8 32 91-122 142-173 (300)
332 KOG4254 Phytoene desaturase [C 97.9 7.2E-05 1.6E-09 67.2 8.6 38 90-128 14-51 (561)
333 PRK10262 thioredoxin reductase 97.9 0.00013 2.8E-09 63.9 10.3 34 90-123 146-179 (321)
334 TIGR01316 gltA glutamate synth 97.9 0.0002 4.4E-09 65.9 11.9 33 91-123 273-305 (449)
335 PRK11749 dihydropyrimidine deh 97.8 0.00021 4.6E-09 65.8 11.6 33 90-122 273-306 (457)
336 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00016 3.5E-09 64.4 10.2 36 214-253 205-240 (364)
337 KOG2311 NAD/FAD-utilizing prot 97.8 0.00011 2.4E-09 66.5 8.7 38 90-127 28-65 (679)
338 PRK12771 putative glutamate sy 97.8 3.3E-05 7.1E-10 73.1 5.7 41 89-130 136-176 (564)
339 COG2303 BetA Choline dehydroge 97.8 2.3E-05 5.1E-10 73.6 4.6 36 88-123 5-40 (542)
340 PRK12770 putative glutamate sy 97.8 0.00025 5.4E-09 63.1 10.8 32 91-122 173-205 (352)
341 PF00996 GDI: GDP dissociation 97.8 0.00022 4.7E-09 65.0 10.4 45 88-133 2-46 (438)
342 COG0493 GltD NADPH-dependent g 97.7 3E-05 6.5E-10 71.1 4.3 40 91-131 124-163 (457)
343 PRK15317 alkyl hydroperoxide r 97.7 0.00035 7.7E-09 65.4 11.2 33 91-123 352-384 (517)
344 PRK12831 putative oxidoreducta 97.7 0.0006 1.3E-08 63.0 12.5 33 90-122 281-313 (464)
345 TIGR01810 betA choline dehydro 97.7 4E-05 8.7E-10 72.0 4.2 32 92-123 1-33 (532)
346 KOG1336 Monodehydroascorbate/f 97.6 0.00044 9.4E-09 62.6 9.6 97 89-253 212-310 (478)
347 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00035 7.6E-09 60.6 7.9 33 91-123 4-36 (439)
348 TIGR03377 glycerol3P_GlpA glyc 97.6 0.00085 1.8E-08 62.8 11.3 53 201-253 127-187 (516)
349 KOG3851 Sulfide:quinone oxidor 97.5 4.3E-05 9.3E-10 65.8 1.3 34 90-123 39-74 (446)
350 PLN02785 Protein HOTHEAD 97.5 0.00013 2.9E-09 69.2 4.7 33 90-123 55-87 (587)
351 PRK12814 putative NADPH-depend 97.4 0.0019 4.2E-08 62.2 12.0 34 90-123 323-357 (652)
352 KOG0405 Pyridine nucleotide-di 97.4 0.00088 1.9E-08 58.6 8.2 43 90-133 20-62 (478)
353 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00029 6.3E-09 62.1 5.0 37 91-128 21-59 (468)
354 PRK12778 putative bifunctional 97.3 0.0025 5.4E-08 62.4 12.0 34 90-123 570-604 (752)
355 PRK12810 gltD glutamate syntha 97.3 0.0033 7.2E-08 58.2 12.1 33 90-122 281-314 (471)
356 TIGR03143 AhpF_homolog putativ 97.3 0.0033 7.1E-08 59.5 11.4 34 90-123 143-176 (555)
357 KOG0399 Glutamate synthase [Am 97.2 0.00038 8.3E-09 68.7 5.0 40 90-130 1785-1824(2142)
358 PRK12779 putative bifunctional 97.2 0.0037 8.1E-08 62.6 11.7 33 90-122 447-479 (944)
359 TIGR01372 soxA sarcosine oxida 97.1 0.0051 1.1E-07 62.1 12.0 33 90-122 317-350 (985)
360 TIGR01318 gltD_gamma_fam gluta 97.1 0.0065 1.4E-07 56.3 11.9 33 91-123 283-316 (467)
361 COG1251 NirB NAD(P)H-nitrite r 97.1 0.00066 1.4E-08 64.5 4.7 95 91-253 146-240 (793)
362 KOG1238 Glucose dehydrogenase/ 97.1 0.00063 1.4E-08 63.8 4.5 36 89-124 56-92 (623)
363 KOG1336 Monodehydroascorbate/f 97.0 0.0035 7.6E-08 56.9 8.8 38 214-253 141-178 (478)
364 PLN02172 flavin-containing mon 97.0 0.0022 4.9E-08 59.2 7.5 33 90-122 204-236 (461)
365 PRK09853 putative selenate red 97.0 0.0087 1.9E-07 59.9 11.5 34 90-123 668-703 (1019)
366 PRK12769 putative oxidoreducta 97.0 0.011 2.3E-07 57.2 11.8 33 91-123 469-502 (654)
367 KOG4716 Thioredoxin reductase 96.9 0.00092 2E-08 58.3 4.0 32 90-121 19-50 (503)
368 KOG1346 Programmed cell death 96.9 0.002 4.3E-08 57.7 5.8 40 214-253 407-446 (659)
369 TIGR03315 Se_ygfK putative sel 96.9 0.01 2.2E-07 59.5 11.0 34 90-123 666-701 (1012)
370 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0023 5E-08 50.2 4.6 32 92-123 1-32 (157)
371 KOG2495 NADH-dehydrogenase (ub 96.7 0.0013 2.9E-08 58.8 3.3 33 91-123 219-265 (491)
372 PF02737 3HCDH_N: 3-hydroxyacy 96.6 0.0031 6.8E-08 50.7 4.8 32 92-123 1-32 (180)
373 PRK05675 sdhA succinate dehydr 96.6 0.014 3.1E-07 55.4 9.5 52 202-253 126-186 (570)
374 COG0446 HcaD Uncharacterized N 96.5 0.012 2.7E-07 52.6 8.2 37 214-253 67-103 (415)
375 COG3486 IucD Lysine/ornithine 96.5 0.025 5.4E-07 50.7 9.6 53 201-253 274-337 (436)
376 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.0036 7.7E-08 50.6 4.0 32 92-123 2-33 (185)
377 PRK01438 murD UDP-N-acetylmura 96.5 0.0045 9.7E-08 57.4 5.2 32 91-122 17-48 (480)
378 PRK13984 putative oxidoreducta 96.4 0.027 5.9E-07 53.8 10.5 30 91-120 419-454 (604)
379 PRK12809 putative oxidoreducta 96.4 0.041 8.8E-07 53.0 11.8 34 90-123 451-485 (639)
380 PF02558 ApbA: Ketopantoate re 96.4 0.0057 1.2E-07 47.3 4.9 31 93-123 1-31 (151)
381 PRK12775 putative trifunctiona 96.4 0.042 9.1E-07 55.6 12.1 33 90-122 571-604 (1006)
382 PRK06129 3-hydroxyacyl-CoA deh 96.3 0.0053 1.1E-07 53.7 4.5 32 92-123 4-35 (308)
383 KOG2495 NADH-dehydrogenase (ub 96.3 0.039 8.5E-07 49.7 9.8 34 90-123 55-88 (491)
384 PRK02705 murD UDP-N-acetylmura 96.2 0.0066 1.4E-07 55.9 4.8 32 92-123 2-33 (459)
385 COG1251 NirB NAD(P)H-nitrite r 96.2 0.032 7E-07 53.4 9.2 38 214-253 73-110 (793)
386 PRK07530 3-hydroxybutyryl-CoA 96.2 0.0093 2E-07 51.6 5.3 33 91-123 5-37 (292)
387 PF00743 FMO-like: Flavin-bind 96.2 0.016 3.6E-07 54.4 7.2 34 90-123 183-216 (531)
388 KOG1439 RAB proteins geranylge 96.1 0.061 1.3E-06 48.1 9.8 40 88-128 2-41 (440)
389 KOG3923 D-aspartate oxidase [A 96.0 0.0067 1.5E-07 52.0 3.4 32 91-122 4-42 (342)
390 COG0569 TrkA K+ transport syst 96.0 0.011 2.3E-07 49.4 4.5 32 92-123 2-33 (225)
391 PRK07819 3-hydroxybutyryl-CoA 95.9 0.014 3E-07 50.5 5.3 33 91-123 6-38 (286)
392 PRK09260 3-hydroxybutyryl-CoA 95.9 0.011 2.5E-07 51.0 4.5 32 92-123 3-34 (288)
393 PRK07066 3-hydroxybutyryl-CoA 95.9 0.017 3.6E-07 50.8 5.5 33 91-123 8-40 (321)
394 PRK05329 anaerobic glycerol-3- 95.9 0.047 1E-06 49.9 8.6 40 214-253 273-315 (422)
395 PRK08293 3-hydroxybutyryl-CoA 95.9 0.013 2.8E-07 50.6 4.8 33 91-123 4-36 (287)
396 PRK06249 2-dehydropantoate 2-r 95.9 0.016 3.4E-07 50.8 5.3 33 91-123 6-38 (313)
397 TIGR03385 CoA_CoA_reduc CoA-di 95.8 0.038 8.2E-07 50.4 7.8 40 214-253 58-100 (427)
398 PF13241 NAD_binding_7: Putati 95.8 0.013 2.8E-07 42.6 3.7 32 91-122 8-39 (103)
399 PF13738 Pyr_redox_3: Pyridine 95.7 0.017 3.7E-07 46.7 4.7 34 90-123 167-200 (203)
400 PRK12771 putative glutamate sy 95.7 0.13 2.7E-06 48.9 11.2 34 90-123 267-301 (564)
401 PRK14106 murD UDP-N-acetylmura 95.7 0.018 3.8E-07 52.9 5.1 33 91-123 6-38 (450)
402 TIGR01470 cysG_Nterm siroheme 95.7 0.022 4.8E-07 46.8 5.2 32 91-122 10-41 (205)
403 PLN02545 3-hydroxybutyryl-CoA 95.7 0.021 4.6E-07 49.5 5.3 33 91-123 5-37 (295)
404 PRK06035 3-hydroxyacyl-CoA deh 95.6 0.018 3.8E-07 49.9 4.7 33 91-123 4-36 (291)
405 COG0492 TrxB Thioredoxin reduc 95.6 0.23 5E-06 43.4 11.5 33 91-123 144-176 (305)
406 PRK06719 precorrin-2 dehydroge 95.6 0.026 5.6E-07 44.4 5.1 31 91-121 14-44 (157)
407 PRK06718 precorrin-2 dehydroge 95.5 0.027 5.8E-07 46.2 5.1 32 91-122 11-42 (202)
408 COG1004 Ugd Predicted UDP-gluc 95.5 0.02 4.3E-07 51.1 4.6 32 92-123 2-33 (414)
409 PRK05708 2-dehydropantoate 2-r 95.5 0.021 4.5E-07 49.9 4.7 32 91-122 3-34 (305)
410 PRK06130 3-hydroxybutyryl-CoA 95.5 0.025 5.5E-07 49.3 5.2 33 91-123 5-37 (311)
411 PF01262 AlaDh_PNT_C: Alanine 95.5 0.027 5.9E-07 44.6 5.0 33 91-123 21-53 (168)
412 PRK05808 3-hydroxybutyryl-CoA 95.5 0.02 4.3E-07 49.3 4.5 33 91-123 4-36 (282)
413 PRK12921 2-dehydropantoate 2-r 95.5 0.019 4.1E-07 49.8 4.4 30 92-121 2-31 (305)
414 PRK11064 wecC UDP-N-acetyl-D-m 95.5 0.022 4.8E-07 51.9 4.9 33 91-123 4-36 (415)
415 TIGR01317 GOGAT_sm_gam glutama 95.4 0.24 5.3E-06 46.1 11.8 34 90-123 283-317 (485)
416 PRK14618 NAD(P)H-dependent gly 95.4 0.029 6.4E-07 49.3 5.3 33 91-123 5-37 (328)
417 PRK06522 2-dehydropantoate 2-r 95.4 0.023 4.9E-07 49.2 4.6 31 92-122 2-32 (304)
418 PF01488 Shikimate_DH: Shikima 95.4 0.034 7.4E-07 42.4 5.0 33 91-123 13-46 (135)
419 PRK08229 2-dehydropantoate 2-r 95.3 0.024 5.1E-07 50.1 4.4 32 91-122 3-34 (341)
420 TIGR02354 thiF_fam2 thiamine b 95.2 0.036 7.8E-07 45.4 5.0 32 91-122 22-54 (200)
421 KOG4405 GDP dissociation inhib 95.2 0.029 6.3E-07 50.3 4.6 48 87-135 5-52 (547)
422 KOG0405 Pyridine nucleotide-di 95.2 0.049 1.1E-06 48.0 5.7 94 90-253 189-284 (478)
423 KOG1346 Programmed cell death 95.1 0.11 2.5E-06 46.8 7.9 39 213-253 270-308 (659)
424 cd01080 NAD_bind_m-THF_DH_Cycl 95.0 0.046 1E-06 43.5 5.0 33 90-122 44-77 (168)
425 TIGR03026 NDP-sugDHase nucleot 94.9 0.032 7E-07 50.7 4.3 32 92-123 2-33 (411)
426 PF00899 ThiF: ThiF family; I 94.9 0.052 1.1E-06 41.3 4.8 33 91-123 3-36 (135)
427 TIGR00518 alaDH alanine dehydr 94.9 0.046 1E-06 49.1 5.1 33 90-122 167-199 (370)
428 PF02254 TrkA_N: TrkA-N domain 94.8 0.059 1.3E-06 39.5 4.9 31 93-123 1-31 (116)
429 cd05292 LDH_2 A subgroup of L- 94.8 0.045 9.7E-07 47.9 4.8 32 92-123 2-35 (308)
430 PRK14619 NAD(P)H-dependent gly 94.8 0.056 1.2E-06 47.2 5.3 33 91-123 5-37 (308)
431 TIGR01763 MalateDH_bact malate 94.8 0.048 1E-06 47.6 4.8 33 91-123 2-35 (305)
432 PRK14620 NAD(P)H-dependent gly 94.7 0.049 1.1E-06 47.9 4.7 32 92-123 2-33 (326)
433 PRK00094 gpsA NAD(P)H-dependen 94.6 0.054 1.2E-06 47.4 4.8 32 92-123 3-34 (325)
434 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.6 0.062 1.4E-06 50.2 5.3 33 91-123 6-38 (503)
435 PF03446 NAD_binding_2: NAD bi 94.6 0.066 1.4E-06 42.2 4.7 33 91-123 2-34 (163)
436 PRK07417 arogenate dehydrogena 94.5 0.052 1.1E-06 46.7 4.4 32 92-123 2-33 (279)
437 PRK07531 bifunctional 3-hydrox 94.5 0.063 1.4E-06 50.1 5.2 33 91-123 5-37 (495)
438 PRK08268 3-hydroxy-acyl-CoA de 94.4 0.069 1.5E-06 50.0 5.2 33 91-123 8-40 (507)
439 PRK04148 hypothetical protein; 94.4 0.05 1.1E-06 41.5 3.5 32 91-123 18-49 (134)
440 KOG2755 Oxidoreductase [Genera 94.4 0.033 7.1E-07 47.2 2.7 30 93-122 2-33 (334)
441 cd00401 AdoHcyase S-adenosyl-L 94.3 0.072 1.6E-06 48.4 5.1 34 90-123 202-235 (413)
442 PRK09424 pntA NAD(P) transhydr 94.3 0.074 1.6E-06 49.7 5.1 34 90-123 165-198 (509)
443 PRK12475 thiamine/molybdopteri 94.1 0.088 1.9E-06 46.7 5.1 33 91-123 25-58 (338)
444 PTZ00082 L-lactate dehydrogena 94.1 0.12 2.5E-06 45.6 5.7 34 91-124 7-41 (321)
445 PRK07688 thiamine/molybdopteri 94.0 0.095 2.1E-06 46.5 5.1 33 91-123 25-58 (339)
446 PRK15116 sulfur acceptor prote 94.0 0.1 2.3E-06 44.6 5.1 33 91-123 31-64 (268)
447 PRK11730 fadB multifunctional 94.0 0.069 1.5E-06 52.1 4.5 33 91-123 314-346 (715)
448 PF00056 Ldh_1_N: lactate/mala 94.0 0.12 2.6E-06 39.8 5.0 32 92-123 2-36 (141)
449 PRK06223 malate dehydrogenase; 94.0 0.098 2.1E-06 45.6 5.0 33 91-123 3-36 (307)
450 COG0686 Ald Alanine dehydrogen 93.9 0.052 1.1E-06 47.0 3.1 32 91-122 169-200 (371)
451 TIGR02356 adenyl_thiF thiazole 93.9 0.12 2.5E-06 42.4 5.1 33 91-123 22-55 (202)
452 PRK12549 shikimate 5-dehydroge 93.9 0.11 2.3E-06 45.0 5.1 33 91-123 128-161 (284)
453 cd05311 NAD_bind_2_malic_enz N 93.9 0.095 2.1E-06 43.7 4.6 32 91-122 26-60 (226)
454 TIGR02437 FadB fatty oxidation 93.9 0.076 1.6E-06 51.8 4.5 33 91-123 314-346 (714)
455 PRK15057 UDP-glucose 6-dehydro 93.9 0.079 1.7E-06 47.9 4.3 31 92-123 2-32 (388)
456 cd01075 NAD_bind_Leu_Phe_Val_D 93.8 0.13 2.8E-06 42.1 5.2 33 91-123 29-61 (200)
457 cd01487 E1_ThiF_like E1_ThiF_l 93.8 0.11 2.4E-06 41.5 4.6 32 92-123 1-33 (174)
458 TIGR01505 tartro_sem_red 2-hyd 93.8 0.091 2E-06 45.4 4.4 32 92-123 1-32 (291)
459 PLN02353 probable UDP-glucose 93.7 0.095 2.1E-06 48.6 4.7 33 91-123 2-36 (473)
460 PLN02712 arogenate dehydrogena 93.7 0.27 5.8E-06 47.7 7.9 32 91-122 53-84 (667)
461 cd01483 E1_enzyme_family Super 93.7 0.13 2.9E-06 39.3 4.9 32 92-123 1-33 (143)
462 TIGR02733 desat_CrtD C-3',4' d 93.7 0.23 5.1E-06 46.1 7.3 56 197-252 227-290 (492)
463 cd05191 NAD_bind_amino_acid_DH 93.6 0.18 3.9E-06 35.1 5.0 31 91-121 24-55 (86)
464 PRK08306 dipicolinate synthase 93.5 0.14 2.9E-06 44.6 5.1 34 90-123 152-185 (296)
465 PRK04690 murD UDP-N-acetylmura 93.5 0.12 2.6E-06 47.9 5.0 32 91-122 9-40 (468)
466 cd01339 LDH-like_MDH L-lactate 93.5 0.1 2.2E-06 45.4 4.3 31 93-123 1-32 (300)
467 PRK02472 murD UDP-N-acetylmura 93.5 0.12 2.6E-06 47.4 4.9 33 91-123 6-38 (447)
468 PRK03369 murD UDP-N-acetylmura 93.4 0.15 3.1E-06 47.6 5.4 32 91-122 13-44 (488)
469 PRK11199 tyrA bifunctional cho 93.4 0.13 2.8E-06 46.2 4.9 34 89-122 97-131 (374)
470 TIGR02441 fa_ox_alpha_mit fatt 93.4 0.1 2.2E-06 51.2 4.5 33 91-123 336-368 (737)
471 PRK08644 thiamine biosynthesis 93.4 0.15 3.2E-06 42.1 4.9 33 91-123 29-62 (212)
472 cd05291 HicDH_like L-2-hydroxy 93.4 0.13 2.8E-06 44.9 4.8 32 92-123 2-35 (306)
473 PF13478 XdhC_C: XdhC Rossmann 93.3 0.12 2.5E-06 39.7 3.8 31 93-123 1-31 (136)
474 TIGR01915 npdG NADPH-dependent 93.3 0.14 3.1E-06 42.3 4.7 32 92-123 2-34 (219)
475 PRK01710 murD UDP-N-acetylmura 93.3 0.13 2.8E-06 47.6 4.8 33 91-123 15-47 (458)
476 cd05293 LDH_1 A subgroup of L- 93.2 0.17 3.7E-06 44.3 5.3 33 91-123 4-38 (312)
477 TIGR02853 spore_dpaA dipicolin 93.2 0.16 3.4E-06 44.0 5.0 34 90-123 151-184 (287)
478 KOG2304 3-hydroxyacyl-CoA dehy 93.2 0.11 2.3E-06 43.1 3.6 34 91-124 12-45 (298)
479 TIGR00561 pntA NAD(P) transhyd 93.2 0.16 3.4E-06 47.4 5.1 34 90-123 164-197 (511)
480 cd01078 NAD_bind_H4MPT_DH NADP 93.2 0.19 4.1E-06 40.6 5.1 32 91-122 29-61 (194)
481 PRK15461 NADH-dependent gamma- 93.1 0.14 3E-06 44.5 4.6 32 92-123 3-34 (296)
482 TIGR02355 moeB molybdopterin s 93.1 0.18 3.9E-06 42.5 5.0 33 91-123 25-58 (240)
483 COG1748 LYS9 Saccharopine dehy 93.1 0.14 3E-06 46.1 4.5 32 91-122 2-34 (389)
484 PRK00066 ldh L-lactate dehydro 93.0 0.23 4.9E-06 43.6 5.8 33 91-123 7-41 (315)
485 TIGR00936 ahcY adenosylhomocys 93.0 0.18 3.9E-06 45.8 5.2 35 89-123 194-228 (406)
486 PRK05690 molybdopterin biosynt 93.0 0.19 4E-06 42.5 5.0 33 91-123 33-66 (245)
487 PRK04308 murD UDP-N-acetylmura 93.0 0.17 3.7E-06 46.5 5.2 33 91-123 6-38 (445)
488 COG1893 ApbA Ketopantoate redu 93.0 0.15 3.2E-06 44.7 4.5 32 92-123 2-33 (307)
489 PRK07502 cyclohexadienyl dehyd 93.0 0.19 4E-06 43.8 5.2 33 91-123 7-41 (307)
490 COG4716 Myosin-crossreactive a 92.9 0.071 1.5E-06 47.5 2.4 42 91-133 23-68 (587)
491 PRK11154 fadJ multifunctional 92.9 0.13 2.9E-06 50.1 4.5 33 91-123 310-343 (708)
492 cd01065 NAD_bind_Shikimate_DH 92.9 0.23 5.1E-06 38.3 5.1 33 91-123 20-53 (155)
493 cd00757 ThiF_MoeB_HesA_family 92.8 0.21 4.6E-06 41.6 5.0 33 91-123 22-55 (228)
494 PRK00683 murD UDP-N-acetylmura 92.8 0.17 3.7E-06 46.1 4.8 33 91-123 4-36 (418)
495 TIGR00507 aroE shikimate 5-deh 92.7 0.2 4.4E-06 42.8 5.0 32 91-122 118-149 (270)
496 PF00670 AdoHcyase_NAD: S-aden 92.7 0.2 4.4E-06 39.4 4.5 35 89-123 22-56 (162)
497 PTZ00142 6-phosphogluconate de 92.7 0.16 3.4E-06 47.1 4.5 33 91-123 2-34 (470)
498 COG3634 AhpF Alkyl hydroperoxi 92.7 0.12 2.5E-06 45.7 3.3 35 89-123 353-387 (520)
499 COG1250 FadB 3-hydroxyacyl-CoA 92.6 0.15 3.2E-06 44.5 3.9 33 91-123 4-36 (307)
500 PRK08328 hypothetical protein; 92.6 0.23 5E-06 41.5 5.0 33 91-123 28-61 (231)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.87 E-value=8.3e-22 Score=163.09 Aligned_cols=153 Identities=34% Similarity=0.591 Sum_probs=129.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+||+|++||+.|.+.|.+|+||||+ .++|||+.++..+. ..||+|.++|...++.+.+.++.+.+.+++.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg-~GvGGRlAtRRl~~--g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~ 78 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKG-RGVGGRLATRRLDG--GRFDHGAQYFKPRDELFLRAVEALRDDGLVD 78 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcC-CCcccchheeccCC--ccccccceeecCCchHHHHHHHHHHhCCcee
Confidence 47999999999999999999999999999998 58999999998874 4599999999999999999999999999999
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc-cceeecCEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV-KLRGQFDVVV 249 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~-~~~~~ad~VV 249 (253)
.|...+..+...+ ..+.+.. .+|++.++|.++.+.|+.. .+|.++++|+.+.+.++.|+++.++ +....+|.||
T Consensus 79 ~W~~~~~~~~~~~-~~~~~d~-~pyvg~pgmsalak~LAtd---L~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vv 153 (331)
T COG3380 79 VWTPAVWTFTGDG-SPPRGDE-DPYVGEPGMSALAKFLATD---LTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVV 153 (331)
T ss_pred eccccccccccCC-CCCCCCC-CccccCcchHHHHHHHhcc---chhhhhhhhhhheecCCeeEEEecCCCcccccceEE
Confidence 9966554443332 2233333 3499999999999977654 8999999999999999999999744 4568999999
Q ss_pred Ec
Q 047483 250 IA 251 (253)
Q Consensus 250 ~A 251 (253)
+|
T Consensus 154 la 155 (331)
T COG3380 154 LA 155 (331)
T ss_pred Ee
Confidence 87
No 2
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=144.84 Aligned_cols=150 Identities=24% Similarity=0.272 Sum_probs=101.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC--------CCccccccCCCccccccccceeccCchhHHHHHH
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG--------GRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVD 161 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
.+||+|||||++||+||..++++|.+|+|||+++. .| |++.- .+.. .++....-+..+...+...+.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~---Tn~~-~~~~~ls~~p~~~~fl~sal~ 77 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNF---TNSE-APDEFLSRNPGNGHFLKSALA 77 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccc---cccc-cHHHHHHhCCCcchHHHHHHH
Confidence 37999999999999999999999999999999853 33 33321 1111 122111111112234444455
Q ss_pred hhhhcccccccccccc--ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEe
Q 047483 162 GWLERGLVRPWEGVIG--ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSE 237 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~ 237 (253)
.+.+.++...+...-. .....|++||..+.. .++++.|+.++. ||+|+++++|.+|++++..+.+.+
T Consensus 78 ~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA---------~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t 148 (408)
T COG2081 78 RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKA---------SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT 148 (408)
T ss_pred hCCHHHHHHHHHhcCCeeEEccCceecCCccch---------HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc
Confidence 5433333332222211 233456777776665 778888777665 799999999999999998999988
Q ss_pred CccceeecCEEEEcCC
Q 047483 238 NVKLRGQFDVVVIAHN 253 (253)
Q Consensus 238 ~~~~~~~ad~VV~AtG 253 (253)
.++..++||.||+|+|
T Consensus 149 ~~g~~i~~d~lilAtG 164 (408)
T COG2081 149 SSGETVKCDSLILATG 164 (408)
T ss_pred CCCCEEEccEEEEecC
Confidence 7776899999999998
No 3
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.72 E-value=4.5e-17 Score=146.64 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=82.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC--------CCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG--------GRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
|||+|||||++||+||+.|++.|.+|+||||+.. .| ||+.-... ....+....-+..+...+...+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~-~gkKil~tG~GrCN~tn~---~~~~~~~~~~~~~~~~f~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKR-VGKKILITGNGRCNLTNL---NIDPSEFLSGYGRNPKFLKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS-S-HHHHHCGGGT-EEEET---TSSGGGEECS-TBTTTCTHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc-cccceeecCCCCcccccc---ccchhhHhhhcccchHHHHHHHhc
Confidence 6999999999999999999999999999999864 44 33331110 111111111111233344444554
Q ss_pred hhhcccccccccccc--ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEe
Q 047483 163 WLERGLVRPWEGVIG--ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSE 237 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~ 237 (253)
+...+....+.+.-. .....+.++|..... .++++.|..++. +++|+++++|.+|+.++++ +.|.+
T Consensus 77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a---------~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~ 147 (409)
T PF03486_consen 77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKA---------SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT 147 (409)
T ss_dssp S-HHHHHHHHHHTT--EEE-STTEEEETT--H---------HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE
T ss_pred CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcH---------HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec
Confidence 433332222222211 223356677766554 667666665543 7999999999999998877 88887
Q ss_pred CccceeecCEEEEcCC
Q 047483 238 NVKLRGQFDVVVIAHN 253 (253)
Q Consensus 238 ~~~~~~~ad~VV~AtG 253 (253)
.++..+.||.||+|+|
T Consensus 148 ~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 148 KNGGEYEADAVILATG 163 (409)
T ss_dssp TTTEEEEESEEEE---
T ss_pred cCcccccCCEEEEecC
Confidence 5778999999999998
No 4
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.60 E-value=6.5e-15 Score=120.38 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=74.5
Q ss_pred EEECcCHHHHHHHHHHhHcCCe-EEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccccc
Q 047483 94 GIIGGGMAGLACALSLDKRGVK-STVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRPW 172 (253)
Q Consensus 94 ~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (253)
+|||||++||++|..|.++|.+ |+|||++. .+||.|...... ..+.. ...+. ....+. ++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~-~~Gg~w~~~~~~-~~~~~---~~~~~-~~~~~~-------------~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND-RPGGVWRRYYSY-TRLHS---PSFFS-SDFGLP-------------DF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS-SSTTHHHCH-TT-TT-BS---SSCCT-GGSS---------------CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC-CCCCeeEEeCCC-Ccccc---Ccccc-ccccCC-------------cc
Confidence 6999999999999999999999 99999985 589887632111 00000 00000 000000 00
Q ss_pred cccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 173 EGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
.... . ...+...+...+.....+.++++.+++++. ++++++++|+++++++++|.|+..++..++||.||+|+
T Consensus 62 ~~~~--~----~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAt 134 (203)
T PF13738_consen 62 ESFS--F----DDSPEWRWPHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLAT 134 (203)
T ss_dssp CHSC--H----HHHHHHHHSBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE--
T ss_pred cccc--c----ccCCCCCCCcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEee
Confidence 0000 0 000000000111222235677777777774 78999999999999999999998887789999999999
Q ss_pred C
Q 047483 253 N 253 (253)
Q Consensus 253 G 253 (253)
|
T Consensus 135 G 135 (203)
T PF13738_consen 135 G 135 (203)
T ss_dssp -
T ss_pred e
Confidence 8
No 5
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.57 E-value=2.7e-14 Score=130.87 Aligned_cols=154 Identities=19% Similarity=0.342 Sum_probs=87.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCC-CccccccccceeccCchhHHHHHHhhhhccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGP-QPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
..+|+|||||++||++|.+|.+.|++|+|||++. .+||.|....... .....+...... . ..+.+.+ ....
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~-~vGG~W~~~~~~~~d~~~~~~~~~~~--~----s~~Y~~L-~tn~ 81 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK-QVGGLWVYTPKSESDPLSLDPTRSIV--H----SSVYESL-RTNL 81 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC-CCcceeecCCCcCCCccccCCCCccc--c----hhhhhhh-hccC
Confidence 4799999999999999999999999999999986 5899885422110 001111000000 0 0011110 0000
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcE--EEcCeEEEEEEEeCCeEEEEeCccc----e
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVS--IVRPCWISNLQPFNGMWHLSENVKL----R 242 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~--i~~~t~V~~i~~~~~~~~v~~~~~~----~ 242 (253)
.++... +..+.....+.....+.+.|.....+.++++.+++.++ +. |+++++|++|++.++.|.|+..++. +
T Consensus 82 p~~~m~-f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~ 159 (461)
T PLN02172 82 PRECMG-YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKD 159 (461)
T ss_pred CHhhcc-CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEeecCCeEEEEEEcCCCceEE
Confidence 000000 00000000000001122334444456777777777765 54 9999999999998889998754321 4
Q ss_pred eecCEEEEcCC
Q 047483 243 GQFDVVVIAHN 253 (253)
Q Consensus 243 ~~ad~VV~AtG 253 (253)
..+|.||+|+|
T Consensus 160 ~~~d~VIvAtG 170 (461)
T PLN02172 160 EIFDAVVVCNG 170 (461)
T ss_pred EEcCEEEEecc
Confidence 57999999998
No 6
>PRK07236 hypothetical protein; Provisional
Probab=99.56 E-value=1.8e-13 Score=122.93 Aligned_cols=140 Identities=21% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
..||+|||||++||++|+.|+++|++|+||||.+.....+ + .++. + .+...+.++.+ ++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-g------~gi~-------l---~~~~~~~l~~l---g~~ 65 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGR-G------AGIV-------L---QPELLRALAEA---GVA 65 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCC-C------ceeE-------e---CHHHHHHHHHc---CCC
Confidence 3799999999999999999999999999999975211000 0 0000 0 01112222221 110
Q ss_pred cccc-----ccccceeeCCeee-eCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483 170 RPWE-----GVIGELEVGGQFT-PFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRG 243 (253)
Q Consensus 170 ~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~ 243 (253)
.... .........+... ..+. .. .......+.+.|.+..++++|+++++|++++.+++++.++.+++.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~--~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~ 141 (386)
T PRK07236 66 LPADIGVPSRERIYLDRDGRVVQRRPM--PQ--TQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRE 141 (386)
T ss_pred cccccccCccceEEEeCCCCEeeccCC--Cc--cccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 0000 0000011111110 0000 00 01123456666777666688999999999998888898888888899
Q ss_pred ecCEEEEcCC
Q 047483 244 QFDVVVIAHN 253 (253)
Q Consensus 244 ~ad~VV~AtG 253 (253)
+||.||.|||
T Consensus 142 ~ad~vIgADG 151 (386)
T PRK07236 142 TADLLVGADG 151 (386)
T ss_pred EeCEEEECCC
Confidence 9999999998
No 7
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.55 E-value=1.3e-13 Score=125.93 Aligned_cols=68 Identities=29% Similarity=0.514 Sum_probs=51.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+|+|||||++||+||+.|+++| ++|+|||++. .+||++.+.... +..+|.|.+.+....+.+.+++++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~-~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~~ 71 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASD-RLGGKIQTVRKD--GFPIELGPESFLARKPSAPALVKE 71 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC-CCcceEEEEeeC--CeEEecChHHhcCCcHHHHHHHHH
Confidence 6999999999999999999988 8999999985 599998775443 456777776554333334444433
No 8
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.55 E-value=4.9e-14 Score=131.03 Aligned_cols=137 Identities=20% Similarity=0.312 Sum_probs=89.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||++||++|..|.+.|++|++|||++ .+||.|........+. ...|.. + ......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~-~iGG~W~~~~~~~~g~-----~~~y~s-------l-----~~n~sk 63 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD-DIGGLWRYTENPEDGR-----SSVYDS-------L-----HTNTSK 63 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS-SSSGGGCHSTTCCCSE-----GGGSTT-------------B-SS-G
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC-CCCccCeeCCcCCCCc-----cccccc-------e-----EEeeCc
Confidence 479999999999999999999999999999986 5999886432211110 001100 0 000000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeC-----CeEEEEeCccc---
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFN-----GMWHLSENVKL--- 241 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~-----~~~~v~~~~~~--- 241 (253)
+.. .+ ..+|++...+.|.....+.++++.++++++ .-.|+|||+|+++++.+ +.|.|++.+++
T Consensus 64 ~~~----~f----sdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~ 135 (531)
T PF00743_consen 64 EMM----AF----SDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEE 135 (531)
T ss_dssp GGS----CC----TTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEE
T ss_pred hHh----cC----CCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEE
Confidence 000 00 225566666777777778899999999886 34799999999999864 36998865432
Q ss_pred eeecCEEEEcCC
Q 047483 242 RGQFDVVVIAHN 253 (253)
Q Consensus 242 ~~~ad~VV~AtG 253 (253)
+..+|.||+|+|
T Consensus 136 ~~~fD~VvvatG 147 (531)
T PF00743_consen 136 TEEFDAVVVATG 147 (531)
T ss_dssp EEEECEEEEEE-
T ss_pred EEEeCeEEEcCC
Confidence 456899999998
No 9
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.54 E-value=1.2e-13 Score=124.80 Aligned_cols=69 Identities=32% Similarity=0.648 Sum_probs=56.9
Q ss_pred cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483 92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW 163 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
.|+|||||++||++||.|.+++ ++|+|||+++ .+||...+... .++.+|.|.+.+......+.+++.++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~-r~GG~l~T~~~--~G~~~e~G~~~f~~~~~~~l~li~eL 72 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD-RVGGLLRTVKI--DGFLFERGPHHFLARKEEILDLIKEL 72 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC-CCCceEEEEee--CCEEEeechhheecchHHHHHHHHHh
Confidence 5999999999999999999999 9999999985 59998877644 47888998887776656666666553
No 10
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.5e-13 Score=125.39 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=88.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG 167 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
..+||+|||||++||++|++|.++|.. ++||||+. ..||.|....++. +..+.....+.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~-~~Gg~W~~~ry~~--l~~~~p~~~~~----------------- 66 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD-DVGGTWRYNRYPG--LRLDSPKWLLG----------------- 66 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC-CcCCcchhccCCc--eEECCchheec-----------------
Confidence 348999999999999999999999998 99999996 5899887655542 22221111110
Q ss_pred ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEe--CCeEEEEeCccce--
Q 047483 168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPF--NGMWHLSENVKLR-- 242 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~--~~~~~v~~~~~~~-- 242 (253)
-.+.|++ +...+.....+.+++...++++. ..+|.+++.|+.+..+ ++.|.|+.+++..
T Consensus 67 ---------------~~~~p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~ 130 (443)
T COG2072 67 ---------------FPFLPFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE 130 (443)
T ss_pred ---------------cCCCccC-CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeee
Confidence 0223333 22233333336777777777765 3567788877777655 4579998777655
Q ss_pred eecCEEEEcCC
Q 047483 243 GQFDVVVIAHN 253 (253)
Q Consensus 243 ~~ad~VV~AtG 253 (253)
++||.||+|||
T Consensus 131 ~~a~~vV~ATG 141 (443)
T COG2072 131 LTADFVVVATG 141 (443)
T ss_pred EecCEEEEeec
Confidence 45999999998
No 11
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.52 E-value=1.2e-13 Score=125.09 Aligned_cols=34 Identities=29% Similarity=0.604 Sum_probs=32.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+||+|||||++|+++|+.|+++|++|+||||++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4899999999999999999999999999999975
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.52 E-value=2.9e-13 Score=125.46 Aligned_cols=69 Identities=26% Similarity=0.512 Sum_probs=55.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHH
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVD 161 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
..||+|||||++||++|+.|.++ |++|+|||++. .+||+..+...+ ++.+|.|.+.+....+.+..+++
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~-rvGGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~ 81 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD-RVGGNITSVSED--GFIWEEGPNSFQPSDPELTSAVD 81 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC-CCCCceeEeccC--CeEEecCCchhccCcHHHHHHHH
Confidence 37999999999999999999999 99999999985 599998876543 56788888877655555544443
No 13
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.52 E-value=2.6e-13 Score=124.74 Aligned_cols=51 Identities=20% Similarity=0.002 Sum_probs=39.1
Q ss_pred hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+..+++.|++.+. |++|+++++|++|+. ++.+.|.+.+ +.++||.||+|+|
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~-g~v~A~~VV~Atg 234 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPD-GQVTADKVVLALN 234 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCC-cEEECCEEEEccc
Confidence 5566666665432 799999999999985 4557776554 5899999999987
No 14
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.52 E-value=6.3e-14 Score=127.01 Aligned_cols=138 Identities=21% Similarity=0.320 Sum_probs=94.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
..+|+|||||++||++|.+|.++|++|+||||.. .+||.|....... +.....|. .+ .....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~-~iGGlW~y~~~~~-----~~~ss~Y~-----------~l-~tn~p 67 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD-DIGGLWKYTENVE-----VVHSSVYK-----------SL-RTNLP 67 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC-CccceEeecCccc-----ccccchhh-----------hh-hccCC
Confidence 4799999999999999999999999999999985 6999885432111 00011111 00 00111
Q ss_pred ccccccccceeeCCeeeeCCCCCCcc-ccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeC-CeEEEEeCcc----ce
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKY-IGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFN-GMWHLSENVK----LR 242 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~-~~~~v~~~~~----~~ 242 (253)
++..+ -..+|++...+.+ .....+.++++.+++.++ ...|+++++|..++..+ +.|.|.+.+. ..
T Consensus 68 Ke~~~--------~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~ 139 (448)
T KOG1399|consen 68 KEMMG--------YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEE 139 (448)
T ss_pred hhhhc--------CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeE
Confidence 11111 0235555554444 333467888888888887 46899999999999888 7999985443 36
Q ss_pred eecCEEEEcCC
Q 047483 243 GQFDVVVIAHN 253 (253)
Q Consensus 243 ~~ad~VV~AtG 253 (253)
..+|.||+|+|
T Consensus 140 ~ifd~VvVctG 150 (448)
T KOG1399|consen 140 EIFDAVVVCTG 150 (448)
T ss_pred EEeeEEEEccc
Confidence 78999999998
No 15
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.52 E-value=4.9e-14 Score=124.00 Aligned_cols=52 Identities=21% Similarity=0.128 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG 253 (253)
...+++.|.+.+. |++|+++++|++|..+++.|+ |.+.++. ++||.||+|+|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G 200 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAG 200 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--G
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccc
Confidence 4566666555432 799999999999999999998 8777765 99999999987
No 16
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.51 E-value=4.4e-13 Score=123.27 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
..++..+.+.|.+..+.++|+++++|++|++++++|.|.+.++..+.||.||+|.
T Consensus 222 ~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~ 276 (463)
T PRK12416 222 KGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAA 276 (463)
T ss_pred CCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECC
Confidence 4568889988888765457999999999999988898887777789999999985
No 17
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.51 E-value=3.7e-13 Score=123.56 Aligned_cols=69 Identities=29% Similarity=0.491 Sum_probs=55.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
.||+|||||++||++|+.|.++ |++|+|+|++. ..||++.+.... ++.+|.|.+++....+.+.+++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~-r~GG~~~t~~~~--g~~~e~G~~~~~~~~~~~~~l~~~ 75 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD-RVGGKIQTVKED--GYLIERGPDSFLERKKSAPDLVKD 75 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC-cCcceEEEEeeC--CEEEecCccccccCChHHHHHHHH
Confidence 6899999999999999999999 99999999986 599998775443 566788877777665555555544
No 18
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.50 E-value=2.1e-13 Score=123.22 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=36.6
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|+++++++++|.+++.++.+++||.||.|||
T Consensus 126 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG 165 (405)
T PRK05714 126 DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADG 165 (405)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence 6999999999999988888988877777899999999998
No 19
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.50 E-value=1.8e-13 Score=123.06 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=80.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC--CCCCccccccCCCccccccccceeccCchhHHHHHHhhhh-cc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG--LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLE-RG 167 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (253)
+||+|||||++||++|+.|+++|++|+|||+.... ..|+. ..+. +.-.++++.+.- ..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~--~~l~-----------------~~~~~~L~~lG~~~~ 63 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRG--IALS-----------------PNALRALERLGLWDR 63 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCcee--eeec-----------------HhHHHHHHHcCChhh
Confidence 79999999999999999999999999999997211 11110 0010 000111221110 00
Q ss_pred cccc---ccccccceeeCC-eeeeC-----CCCCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEe
Q 047483 168 LVRP---WEGVIGELEVGG-QFTPF-----PSSPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSE 237 (253)
Q Consensus 168 ~~~~---~~~~~~~~~~~~-~~~~~-----~~~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~ 237 (253)
+... +.... .....+ ....+ ......+ +....+...+...+.+.++++++++++|+.++++++.+.++.
T Consensus 64 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l 142 (387)
T COG0654 64 LEALGVPPLHVM-VVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTL 142 (387)
T ss_pred hhhccCCceeeE-EEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEE
Confidence 0000 00000 001111 00111 1010111 111123334444444455699999999999999988888876
Q ss_pred C-ccceeecCEEEEcCC
Q 047483 238 N-VKLRGQFDVVVIAHN 253 (253)
Q Consensus 238 ~-~~~~~~ad~VV~AtG 253 (253)
+ ++.+++||+||.|||
T Consensus 143 ~~dG~~~~a~llVgADG 159 (387)
T COG0654 143 SFDGETLDADLLVGADG 159 (387)
T ss_pred cCCCcEEecCEEEECCC
Confidence 6 888999999999998
No 20
>PLN02268 probable polyamine oxidase
Probab=99.50 E-value=6e-13 Score=121.39 Aligned_cols=68 Identities=28% Similarity=0.462 Sum_probs=53.4
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccC--chhHHHHHHh
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN--DSRFHELVDG 162 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (253)
+|+|||||++||++|+.|.++|++|+|||+++ .+|||+.+... .+..+|.|++++... ...+.+++++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~-r~GGri~t~~~--~g~~~d~G~~~i~~~~~~~~~~~l~~~ 71 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRD-RIGGRVHTDYS--FGFPVDMGASWLHGVCNENPLAPLIGR 71 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCceeeecCc--CCcccCCCCeeEeccCCCchHHHHHHH
Confidence 79999999999999999999999999999985 69999977543 356788998877532 2234444444
No 21
>PRK08013 oxidoreductase; Provisional
Probab=99.50 E-value=2.1e-13 Score=123.13 Aligned_cols=44 Identities=16% Similarity=0.020 Sum_probs=38.4
Q ss_pred hhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 210 AQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 210 ~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
...++++++++++|++++++++.+.++..++.+++||+||.|||
T Consensus 122 ~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG 165 (400)
T PRK08013 122 QQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADG 165 (400)
T ss_pred hcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCC
Confidence 33447999999999999988888888877878899999999998
No 22
>PRK06753 hypothetical protein; Provisional
Probab=99.49 E-value=6e-13 Score=118.86 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=80.1
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP 171 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
||+|||||++||++|+.|+++|++|+||||.+. ......+..+... +...+.. . .+.+.+...+....
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~g~gi~l~~~------~~~~L~~--~---gl~~~~~~~~~~~~ 69 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES-VKEVGAGIGIGDN------VIKKLGN--H---DLAKGIKNAGQILS 69 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-ccccccceeeChH------HHHHHHh--c---ChHHHHHhcCCccc
Confidence 799999999999999999999999999999853 2110000000000 0000000 0 00111100000000
Q ss_pred ccccccceeeCCee-eeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 172 WEGVIGELEVGGQF-TPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.....+..+.. .............-.-..+.+.|.+..+..+|+++++|++|+++++++.++++++..+++|.||.
T Consensus 70 ---~~~~~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vig 146 (373)
T PRK06753 70 ---TMNLLDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIG 146 (373)
T ss_pred ---ceeEEcCCCCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEE
Confidence 00000011111 00000000000111223455555565556789999999999988888988888888899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|||
T Consensus 147 adG 149 (373)
T PRK06753 147 ADG 149 (373)
T ss_pred CCC
Confidence 998
No 23
>PRK06847 hypothetical protein; Provisional
Probab=99.48 E-value=5e-13 Score=119.39 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=36.4
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|++++.+++.+.+.+.++.++.+|.||+|||
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 6899999999999988888888877778899999999998
No 24
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.48 E-value=6.1e-13 Score=119.72 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=36.5
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|++++.+++.+.++.+++.+++||.||+|+|
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG 166 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADG 166 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecC
Confidence 6999999999999988888888877777899999999998
No 25
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.48 E-value=6.4e-13 Score=118.66 Aligned_cols=51 Identities=4% Similarity=-0.068 Sum_probs=39.4
Q ss_pred HHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 202 RPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
..++..+.+.. .+++++++++|++++.+++.|.+.++++ .++||.||+|+|
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G 201 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAG 201 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecC
Confidence 44444443322 2799999999999998888888876654 899999999998
No 26
>PRK07045 putative monooxygenase; Reviewed
Probab=99.48 E-value=6.2e-13 Score=119.50 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhh-hcc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWL-ERG 167 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (253)
..+||+||||||+||++|+.|+++|++|+|+|+.+. ..-..+...+.+.+. ..+..- ..+..+.+... ...
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~-~~~~~~~~~l~~~~~------~~L~~l-Gl~~~~~~~~~~~~~ 75 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR-NRAQNGADLLKPSGI------GVVRAM-GLLDDVFAAGGLRRD 75 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc-ccCCCcccccCccHH------HHHHHc-CCHHHHHhccccccc
Confidence 347999999999999999999999999999999753 110000000111110 011000 00000010000 000
Q ss_pred ccccccccccceeeCCeeeeCCCCC-CccccCCChHHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCe--EEEEeCccc
Q 047483 168 LVRPWEGVIGELEVGGQFTPFPSSP-PKYIGVNGMRPLADSLLAQ---TSMVSIVRPCWISNLQPFNGM--WHLSENVKL 241 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~--~~v~~~~~~ 241 (253)
....+.. +... ...++.... ..+...-....+.+.|.++ .++++++++++|++++.++++ +.|+.+++.
T Consensus 76 ~~~~~~~--g~~~---~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~ 150 (388)
T PRK07045 76 AMRLYHD--KELI---ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE 150 (388)
T ss_pred ceEEecC--CcEE---EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence 0000000 0000 000111100 0110000112333334433 347999999999999887554 457777778
Q ss_pred eeecCEEEEcCC
Q 047483 242 RGQFDVVVIAHN 253 (253)
Q Consensus 242 ~~~ad~VV~AtG 253 (253)
++++|.||.|||
T Consensus 151 ~~~~~~vIgADG 162 (388)
T PRK07045 151 RVAPTVLVGADG 162 (388)
T ss_pred EEECCEEEECCC
Confidence 899999999998
No 27
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.47 E-value=4.6e-13 Score=120.27 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=38.2
Q ss_pred cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.++++++++++|++++.+++++.++++++.+++||.||.|||
T Consensus 123 ~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG 164 (384)
T PRK08849 123 YPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADG 164 (384)
T ss_pred CCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecC
Confidence 357999999999999998888888888888999999999998
No 28
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.47 E-value=5.2e-13 Score=120.75 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=37.6
Q ss_pred cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.++++++++++|++++.+++.+.++.+++.+++||.||.|||
T Consensus 124 ~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG 165 (405)
T PRK08850 124 QDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADG 165 (405)
T ss_pred CCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCC
Confidence 346999999999999988888888888888999999999998
No 29
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.46 E-value=1e-12 Score=117.50 Aligned_cols=52 Identities=8% Similarity=0.020 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
...+++.|.+.+ .+++++++++|++|+++++.+.|.+++ +++.+|.||+|+|
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~-~~i~a~~vV~aaG 197 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK-GSYQANKLVVTAG 197 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC-CEEEeCEEEEecC
Confidence 345555544432 269999999999999888888876655 4899999999987
No 30
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.46 E-value=2.1e-12 Score=123.68 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=43.5
Q ss_pred hHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
...+++.|.+... |++++++++|++|+..++.|.|.+.++..++||.||+|+|
T Consensus 407 p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G 460 (662)
T PRK01747 407 PAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANG 460 (662)
T ss_pred HHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCC
Confidence 4667777766543 6999999999999988888998776666678999999998
No 31
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.46 E-value=3.7e-13 Score=121.11 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=40.4
Q ss_pred HHHHHHHhh---cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 203 PLADSLLAQ---TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 203 ~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.+.+.|.+. .++++++++++|++++.+++++.+.+.++.++.||.||.|+|
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 163 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDG 163 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCC
Confidence 344444443 235899999999999988888888877777899999999998
No 32
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.46 E-value=5e-13 Score=119.50 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=36.2
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|++++.+++++.+.+.++..+.+|.||.|+|
T Consensus 121 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 121 NVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred CcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence 4899999999999988888888877777899999999998
No 33
>PRK07588 hypothetical protein; Provisional
Probab=99.46 E-value=6e-13 Score=119.72 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 204 LADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 204 l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+.+.|.+... +++|+++++|+++++++++|.+.++++.++++|.||.|||
T Consensus 105 l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 105 LAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred HHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 4444444333 5899999999999998889998888888899999999998
No 34
>PRK05868 hypothetical protein; Validated
Probab=99.46 E-value=9.7e-13 Score=117.79 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHHHHHhhc-CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 203 PLADSLLAQT-SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 203 ~l~~~l~~~~-~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.+.+.|.+.. .+++++++++|++++.+++.+.++++++.+++||.||.|||
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 3444443332 37999999999999988888888888888999999999998
No 35
>PRK07233 hypothetical protein; Provisional
Probab=99.46 E-value=1.1e-12 Score=119.06 Aligned_cols=66 Identities=36% Similarity=0.590 Sum_probs=48.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHH
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELV 160 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+|+|||||++||++|+.|+++|++|+|+|++. ..||+..+.... +..+|.+.+.+....+.+.+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~-~~GG~~~s~~~~--g~~~d~g~~~~~~~~~~~~~l~ 66 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD-QLGGLAASFEFG--GLPIERFYHHIFKSDEALLELL 66 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC-CCCCceeeeccC--CcchhhhhhhhccccHHHHHHH
Confidence 58999999999999999999999999999986 589987654433 4455555554433333333333
No 36
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.46 E-value=7.5e-13 Score=118.89 Aligned_cols=41 Identities=10% Similarity=-0.107 Sum_probs=35.3
Q ss_pred cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.+++. +++++|++++.+++.|.++.+++.+++||.||+|||
T Consensus 124 ~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 124 LPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence 34455 889999999988889998887777899999999998
No 37
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.46 E-value=7.3e-13 Score=119.06 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=38.4
Q ss_pred HhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 209 LAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 209 ~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+...++++++++++|++++.+++.|.+.++++..+++|.||+|+|
T Consensus 122 ~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 166 (395)
T PRK05732 122 LDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADG 166 (395)
T ss_pred HhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence 334457999999999999988888888877777899999999998
No 38
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.45 E-value=4e-13 Score=118.09 Aligned_cols=34 Identities=38% Similarity=0.643 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
+||+|||||++||++|+.|+++|++|+||||...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 6999999999999999999999999999999753
No 39
>PRK06184 hypothetical protein; Provisional
Probab=99.45 E-value=1e-12 Score=122.01 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=32.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+||+|||||++||++|+.|+++|++|+||||.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4899999999999999999999999999999975
No 40
>PRK09126 hypothetical protein; Provisional
Probab=99.45 E-value=4.5e-13 Score=120.41 Aligned_cols=41 Identities=7% Similarity=0.026 Sum_probs=36.9
Q ss_pred CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 213 SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 213 ~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.+++|+++++|++++.+++.+.+.++++.+++||.||.|||
T Consensus 124 ~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (392)
T PRK09126 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADS 164 (392)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCC
Confidence 47999999999999988888888877778999999999998
No 41
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.45 E-value=1.4e-12 Score=117.55 Aligned_cols=52 Identities=8% Similarity=-0.032 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
...+++.|.+.+. |++++++++|.+++..++.|.+.+.+ +.+.||.||+|+|
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~-g~i~ad~vV~A~G 201 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQ-GEYEARTLINCAG 201 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECC-CEEEeCEEEECCC
Confidence 4566666655432 79999999999999888888777655 4899999999998
No 42
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.45 E-value=2e-12 Score=117.83 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
.+||+|||||++|+++|+.|+++|++|+||||... +|..+.. +...+. ..+..++..+......
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~-~g~k~~~------------gg~l~~---~~~e~l~~~~~~~~~~ 68 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS-AGAKNVT------------GGRLYA---HSLEHIIPGFADSAPV 68 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC-CCCcccc------------cceech---hhHHHHhhhhhhcCcc
Confidence 48999999999999999999999999999999753 4432100 000000 0011111111000000
Q ss_pred cccc--ccccceeeCCe-eeeCCC------CCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc
Q 047483 170 RPWE--GVIGELEVGGQ-FTPFPS------SPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV 239 (253)
Q Consensus 170 ~~~~--~~~~~~~~~~~-~~~~~~------~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~ 239 (253)
..+. .....+...+. ...+.. ....| +.+..+.+++...+++ .|++++++++|++++.+++.+.+..++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~~~~g~v~~v~~~ 147 (428)
T PRK10157 69 ERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLVQRDGKVVGVEAD 147 (428)
T ss_pred cceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEeCCEEEEEEcC
Confidence 0000 00000000000 001100 00111 1111123333333333 279999999999998877776544556
Q ss_pred cceeecCEEEEcCC
Q 047483 240 KLRGQFDVVVIAHN 253 (253)
Q Consensus 240 ~~~~~ad~VV~AtG 253 (253)
+..++|+.||+|+|
T Consensus 148 g~~i~A~~VI~A~G 161 (428)
T PRK10157 148 GDVIEAKTVILADG 161 (428)
T ss_pred CcEEECCEEEEEeC
Confidence 67899999999998
No 43
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.45 E-value=5.4e-13 Score=119.93 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=38.1
Q ss_pred hhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 210 AQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 210 ~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+..++++++++++|++++.+++.|.+..+++.+++||.||.|||
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 166 (391)
T PRK08020 123 EAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADG 166 (391)
T ss_pred HcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCC
Confidence 33457999999999999988888888877777899999999998
No 44
>PLN02661 Putative thiazole synthesis
Probab=99.45 E-value=4.1e-12 Score=111.37 Aligned_cols=39 Identities=41% Similarity=0.721 Sum_probs=34.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCCCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNHGLGG 128 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~~gg 128 (253)
.++||+|||||++|+++|+.|++. |++|+|+||+.. .||
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~-~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS-PGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc-ccc
Confidence 358999999999999999999986 899999999854 444
No 45
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.45 E-value=1.2e-12 Score=122.56 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=79.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
.+||+|||||++||++|+.|+++|++|+||||... .........+... +...+..- .+.+++.....
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~-~~~~~ra~~l~~~------~~~~L~~l-----Gl~~~l~~~~~- 76 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT-LYDLPRAVGIDDE------ALRVLQAI-----GLADEVLPHTT- 76 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCCCCceeeeCHH------HHHHHHHc-----CChhHHHhhcc-
Confidence 48999999999999999999999999999999853 2211101001000 00000000 00111111000
Q ss_pred ccccccccceeeCC-eeeeCC-------CCCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--
Q 047483 170 RPWEGVIGELEVGG-QFTPFP-------SSPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-- 238 (253)
Q Consensus 170 ~~~~~~~~~~~~~~-~~~~~~-------~~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-- 238 (253)
.+... ......+ ....+. ++...+ +....+..++...+.+.++++|+++++|++++++++++.++.+
T Consensus 77 -~~~~~-~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~ 154 (538)
T PRK06183 77 -PNHGM-RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA 154 (538)
T ss_pred -cCCce-EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC
Confidence 00000 0000001 111110 011011 1112233444443444557999999999999999888887654
Q ss_pred cc--ceeecCEEEEcCC
Q 047483 239 VK--LRGQFDVVVIAHN 253 (253)
Q Consensus 239 ~~--~~~~ad~VV~AtG 253 (253)
++ .+++||+||.|||
T Consensus 155 ~G~~~~i~ad~vVgADG 171 (538)
T PRK06183 155 DGQRETVRARYVVGCDG 171 (538)
T ss_pred CCCEEEEEEEEEEecCC
Confidence 33 4799999999998
No 46
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.44 E-value=1e-12 Score=117.73 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=35.8
Q ss_pred cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 212 TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 212 ~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.++++++++++|+++.++++++.+.++++ +++||.||.|||
T Consensus 117 ~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG 157 (374)
T PRK06617 117 NPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDG 157 (374)
T ss_pred CCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCC
Confidence 34588999999999998888888887664 999999999998
No 47
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.44 E-value=1.5e-12 Score=117.59 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc-cccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
.+||+||||||+|++||+.|+++|++|+||||... +|..... ..... ..+.++...+... +
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~-~G~k~~~~~~~~~----------------~~l~~l~~~~~~~-i 64 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE-PGAKPCCGGGLSP----------------RALEELIPDFDEE-I 64 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC-CCCCccccceech----------------hhHHHhCCCcchh-h
Confidence 48999999999999999999999999999999753 5543321 10100 0000111110000 0
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEE-eCccceeec
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLS-ENVKLRGQF 245 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~-~~~~~~~~a 245 (253)
..........+.........+. ...|.- ....+.+.|+++.. |++++.++.|..+..+++++.+. ..++.+++|
T Consensus 65 ~~~v~~~~~~~~~~~~~~~~~~-~~~y~v--~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a 141 (396)
T COG0644 65 ERKVTGARIYFPGEKVAIEVPV-GEGYIV--DRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRA 141 (396)
T ss_pred heeeeeeEEEecCCceEEecCC-CceEEE--EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEc
Confidence 0000000000000000111111 011111 12333333443322 79999999999999988776544 344468999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
++||.|+|
T Consensus 142 ~~vI~AdG 149 (396)
T COG0644 142 KVVIDADG 149 (396)
T ss_pred CEEEECCC
Confidence 99999998
No 48
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.44 E-value=1.9e-12 Score=117.39 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
..+.+.|.+.++...++++++|++|+.++++|.+.++++.+++||.||+|||
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG 156 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADG 156 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCC
Confidence 5677777777766778999999999988888999888888899999999998
No 49
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.44 E-value=3.5e-12 Score=115.45 Aligned_cols=33 Identities=39% Similarity=0.789 Sum_probs=31.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.||+|||||++|+++|++|++.|.+|+||||+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 599999999999999999999999999999975
No 50
>PRK07190 hypothetical protein; Provisional
Probab=99.44 E-value=1.6e-12 Score=120.20 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC-CCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG-LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
.+||+|||||++||++|+.|+++|++|+||||.... ..++... ..... ..++.. ..+.+.+...+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~--l~~~t------le~L~~-----lGl~~~l~~~~~ 71 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADA--LNART------LQLLEL-----VDLFDELYPLGK 71 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceE--eCHHH------HHHHHh-----cChHHHHHhhCc
Confidence 379999999999999999999999999999997531 1121100 00000 000000 001111111110
Q ss_pred ----cccccccccceeeCCe-eeeCCCCC-Ccc--ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc
Q 047483 169 ----VRPWEGVIGELEVGGQ-FTPFPSSP-PKY--IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK 240 (253)
Q Consensus 169 ----~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~ 240 (253)
...|... ..+..... +....... +.+ .....+..++...+++. |++|+++++|++++++++++.+...++
T Consensus 72 ~~~~~~~~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v~v~~~~g 149 (487)
T PRK07190 72 PCNTSSVWANG-KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGCLTTLSNG 149 (487)
T ss_pred cceeEEEecCC-ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCeeEEEECCC
Confidence 0111100 00000000 00000000 000 11111233333323333 699999999999999888887776666
Q ss_pred ceeecCEEEEcCC
Q 047483 241 LRGQFDVVVIAHN 253 (253)
Q Consensus 241 ~~~~ad~VV~AtG 253 (253)
.+++|++||.|||
T Consensus 150 ~~v~a~~vVgADG 162 (487)
T PRK07190 150 ERIQSRYVIGADG 162 (487)
T ss_pred cEEEeCEEEECCC
Confidence 7899999999998
No 51
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.44 E-value=1.2e-12 Score=117.93 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=36.6
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|++++++++.+.++.+++..++||.||.|||
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG 164 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADG 164 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCC
Confidence 6999999999999988888888877777899999999998
No 52
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.44 E-value=2e-12 Score=111.15 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=75.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
+||+|||||++|+++|+.|+++|++|+|+|++.. .+....+....... ...+..... .....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~~~~~------~~~l~~~~~---~~~~~-------- 62 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGALSPRV------LEELDLPLE---LIVNL-------- 62 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-CCcccccCccCHhH------HHHhcCCch---hhhhh--------
Confidence 5999999999999999999999999999999853 32211111111000 000000000 00000
Q ss_pred cccccccceeeCC-e-eeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-ccceeecCE
Q 047483 171 PWEGVIGELEVGG-Q-FTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-VKLRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-~~~~~~ad~ 247 (253)
+... ......+ . ..+.+......+....+.+.+...+.+. +++++++++|++++.+++.+.+..+ ++.+++||+
T Consensus 63 -~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~ 139 (295)
T TIGR02032 63 -VRGA-RFFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKI 139 (295)
T ss_pred -eeeE-EEEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCE
Confidence 0000 0000000 0 0111100001111112333333333332 6999999999999988887766543 345799999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 140 vv~a~G 145 (295)
T TIGR02032 140 VIGADG 145 (295)
T ss_pred EEECCC
Confidence 999998
No 53
>PLN02568 polyamine oxidase
Probab=99.44 E-value=5.1e-12 Score=117.94 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
..++..+++.|.+..++..|++|++|++|++.+++|.|++.++..+.||+||+|.
T Consensus 238 ~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTv 292 (539)
T PLN02568 238 AKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTV 292 (539)
T ss_pred CCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcC
Confidence 3468889999988876567999999999999999999988887789999999985
No 54
>PRK06834 hypothetical protein; Provisional
Probab=99.43 E-value=2.5e-12 Score=118.94 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=78.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC--CCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG--LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
+||+|||||++|+++|+.|+++|++|+|||+.... .+.+... +... ....+.. ..+.+.+.+.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~--l~~~------s~~~L~~-----lGl~~~l~~~~~ 70 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGG--LHAR------TLEVLDQ-----RGIADRFLAQGQ 70 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceee--ECHH------HHHHHHH-----cCcHHHHHhcCC
Confidence 79999999999999999999999999999997531 1111100 0000 0000000 001111111110
Q ss_pred cccccccccceeeCCeeeeCCCC--CCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSS--PPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD 246 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad 246 (253)
...... ...... .+...+.. ....+....+.+++...+++. +++|+++++|++++++++++.++..++.+++||
T Consensus 71 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~ 146 (488)
T PRK06834 71 VAQVTG-FAATRL--DISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQ 146 (488)
T ss_pred ccccce-eeeEec--ccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 000000 000000 00000000 000011112333333333333 699999999999999888888877666789999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
+||.|+|
T Consensus 147 ~vVgADG 153 (488)
T PRK06834 147 YLVGCDG 153 (488)
T ss_pred EEEEecC
Confidence 9999998
No 55
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=116.94 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCe-EEEEeCccce-eecCEEEEcCC
Q 047483 201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGM-WHLSENVKLR-GQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~-~~ad~VV~AtG 253 (253)
...+..+|++.+ .|+++++|++|++|++.+++ +.+.+.++.+ ++|+.||.|.|
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AG 208 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAG 208 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCc
Confidence 455555555533 27999999999999998884 5555656555 99999999987
No 56
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.43 E-value=1.6e-12 Score=116.46 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=41.4
Q ss_pred HHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 202 RPLADSLLAQ---TSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 202 ~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
..+.+.|.+. .++++++++++|++++.++++|.++++++.+++||.||+|+|
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecC
Confidence 3444444443 237999999999999988888888877777899999999998
No 57
>PRK06185 hypothetical protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=117.21 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=32.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.++||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45899999999999999999999999999999974
No 58
>PRK10015 oxidoreductase; Provisional
Probab=99.42 E-value=1.1e-12 Score=119.63 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=32.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||||++|+++|+.|+++|++|+||||...
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 48999999999999999999999999999999753
No 59
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.42 E-value=2.6e-12 Score=115.29 Aligned_cols=39 Identities=18% Similarity=0.014 Sum_probs=34.4
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++ ++.|++++.+++.+.++++++.+++||.||+|+|
T Consensus 126 ~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG 164 (388)
T PRK07608 126 NLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADG 164 (388)
T ss_pred CcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCC
Confidence 48888 9999999888888888877777899999999998
No 60
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.9e-12 Score=104.90 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=76.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
+.||+|||||++||+|||+|+++|++|+|||++...-||.|++-..-+. .. -.+...++++++. +
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~---------iV--v~~~a~~iL~e~g---I- 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNK---------IV--VREEADEILDEFG---I- 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccce---------ee--ecchHHHHHHHhC---C-
Confidence 3799999999999999999999999999999985434455544322110 00 0122234444420 0
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHh-hcC-CcEEEcCeEEEEEEEeCC-e-------EEEE---
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLA-QTS-MVSIVRPCWISNLQPFNG-M-------WHLS--- 236 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-gv~i~~~t~V~~i~~~~~-~-------~~v~--- 236 (253)
.+.+... .|.-.+. ..++..|+. .+. |++|+..+.|+++...++ + |...
T Consensus 95 --------------~ye~~e~---g~~v~ds-~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~ 156 (262)
T COG1635 95 --------------RYEEEED---GYYVADS-AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMA 156 (262)
T ss_pred --------------cceecCC---ceEEecH-HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhc
Confidence 1111111 1111111 222222222 222 699999999999976555 2 2211
Q ss_pred --eCccceeecCEEEEcCC
Q 047483 237 --ENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 237 --~~~~~~~~ad~VV~AtG 253 (253)
+-|--.++|++||-|||
T Consensus 157 ~lhvDPl~i~a~~VvDaTG 175 (262)
T COG1635 157 GLHVDPLTIRAKAVVDATG 175 (262)
T ss_pred ccccCcceeeEEEEEeCCC
Confidence 11235789999999998
No 61
>PRK07208 hypothetical protein; Provisional
Probab=99.41 E-value=5.1e-12 Score=116.66 Aligned_cols=73 Identities=30% Similarity=0.345 Sum_probs=57.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW 163 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++..||+|||||++||++|+.|+++|++|+|+|++. ..||++.+.... ++.+|.|.+++....+.+.++++++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~-~~GG~~~s~~~~--g~~~d~G~h~~~~~~~~~~~l~~~l 74 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP-VVGGISRTVTYK--GNRFDIGGHRFFSKSPEVMDLWNEI 74 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCceeeeeccC--CceEccCCceeccCCHHHHHHHHHh
Confidence 445799999999999999999999999999999985 589988765443 4567777777665555555555544
No 62
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.40 E-value=7.9e-12 Score=113.21 Aligned_cols=52 Identities=15% Similarity=-0.042 Sum_probs=39.3
Q ss_pred hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEE-EEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWH-LSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~-v~~~~~~~~~ad~VV~AtG 253 (253)
...+++.|.+.. .|++|+++++|++|+.+++.+. +.+ +++++.||.||+|+|
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t-~~~~~~a~~VV~a~G 254 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT-GGGVITADAYVVALG 254 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe-CCcEEeCCEEEECCC
Confidence 455666655433 2799999999999998877764 444 456899999999998
No 63
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.40 E-value=4.3e-12 Score=109.52 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=73.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
+||+|||||++|+++|..|++.|++|+|+|++. .||.+.....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~--~gg~~~~~~~----------------------------------- 43 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME--PGGQLTTTTE----------------------------------- 43 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC--CCcceeeccc-----------------------------------
Confidence 589999999999999999999999999999874 5654321100
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
+..+++.. .......+...++..+++. ++++++ ++|++++..++.|.+..+++..+++|.||+
T Consensus 44 --------------~~~~~~~~-~~~~~~~~~~~l~~~~~~~-gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~lii 106 (300)
T TIGR01292 44 --------------VENYPGFP-EGISGPELMEKMKEQAVKF-GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVII 106 (300)
T ss_pred --------------ccccCCCC-CCCChHHHHHHHHHHHHHc-CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEE
Confidence 00000000 0000001223333333343 588888 899999988888888877767899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 107 AtG 109 (300)
T TIGR01292 107 ATG 109 (300)
T ss_pred CCC
Confidence 998
No 64
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.39 E-value=2.4e-12 Score=116.36 Aligned_cols=147 Identities=18% Similarity=0.292 Sum_probs=79.3
Q ss_pred EEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc----cc-cCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 94 GIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT----RM-IGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 94 ~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
+|||||++||++|+.|+++|++|+|+||+.. .|+.+.. +. +.... ..+.....+......+...+..+....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~-~G~k~~~sG~grcn~tn~~-~~~~~~~~~~~~~~~~~~~l~~~~~~d- 77 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK-IGKKLLISGGGRCNLTNSC-PTPEFVAYYPRNGKFLRSALSRFSNKD- 77 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc-ccccccccCCceEEccCCC-cchhHHHhcCCCcHHHHHHHHhCCHHH-
Confidence 6999999999999999999999999999863 5543211 10 00000 000000111111111112222111111
Q ss_pred ccccccccc-c--eeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCcccee
Q 047483 169 VRPWEGVIG-E--LEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRG 243 (253)
Q Consensus 169 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~ 243 (253)
...|....+ . ....+.++|... ....+.+.+.+.+ .+++++++++|++++++++.|.+.. ++..+
T Consensus 78 ~~~~~~~~Gv~~~~~~~g~~~p~~~---------~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i 147 (400)
T TIGR00275 78 LIDFFESLGLELKVEEDGRVFPCSD---------SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEY 147 (400)
T ss_pred HHHHHHHcCCeeEEecCCEeECCCC---------CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEE
Confidence 111211111 1 111222332221 1234444444332 2699999999999988777887766 45689
Q ss_pred ecCEEEEcCC
Q 047483 244 QFDVVVIAHN 253 (253)
Q Consensus 244 ~ad~VV~AtG 253 (253)
.+|.||+|+|
T Consensus 148 ~ad~VIlAtG 157 (400)
T TIGR00275 148 EADKVILATG 157 (400)
T ss_pred EcCEEEECCC
Confidence 9999999998
No 65
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.39 E-value=3.3e-12 Score=115.39 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 589999999999999999999999999999975
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.39 E-value=6.5e-12 Score=106.85 Aligned_cols=38 Identities=39% Similarity=0.686 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||||++|+++|+.|++.|++|+|+|+... .||
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Gg 62 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGG 62 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCC
Confidence 38999999999999999999999999999999854 554
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.38 E-value=7.3e-12 Score=106.30 Aligned_cols=38 Identities=37% Similarity=0.624 Sum_probs=34.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||||++||++|+.|+++|++|+|+||+.. .|+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~Gg 58 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-FGG 58 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCc
Confidence 38999999999999999999999999999999864 443
No 68
>PRK06126 hypothetical protein; Provisional
Probab=99.38 E-value=7.9e-12 Score=117.25 Aligned_cols=35 Identities=46% Similarity=0.714 Sum_probs=32.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.++||+|||||++||++|+.|+++|++|+||||..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34899999999999999999999999999999874
No 69
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.37 E-value=7.5e-12 Score=98.62 Aligned_cols=147 Identities=20% Similarity=0.235 Sum_probs=81.3
Q ss_pred EEECcCHHHHHHHHHHhHc-----CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 94 GIIGGGMAGLACALSLDKR-----GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 94 ~iiG~G~~G~~~a~~l~~~-----g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
+|||+|++|++++.+|.++ ..+|+|||+...+.|+.+.....+ ..........+......- ...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~--~~llN~~a~~~s~~~~~~---------~~~ 69 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPP--SHLLNTPADQMSLFPDDP---------GDD 69 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCCh--HHhhcccccccccccccC---------CCC
Confidence 5999999999999999887 579999999754344444332111 111111111111100000 011
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEE-cCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIV-RPCWISNLQPFNGMWHLSENVKLRGQFD 246 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~-~~t~V~~i~~~~~~~~v~~~~~~~~~ad 246 (253)
+.+|...... +.. .........++.....-+...++.+.+..+ +++|. ...+|++|+..+++|.+.++++..+.||
T Consensus 70 f~~Wl~~~~~-~~~-~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d 147 (156)
T PF13454_consen 70 FVDWLRANGA-DEA-EEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD 147 (156)
T ss_pred HHHHHHhcCc-ccc-cccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence 1122211110 000 000011112333333334555555555544 44443 4679999999999999888898999999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||+|+|
T Consensus 148 ~VvLa~G 154 (156)
T PF13454_consen 148 AVVLATG 154 (156)
T ss_pred EEEECCC
Confidence 9999998
No 70
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.37 E-value=7.1e-12 Score=113.33 Aligned_cols=34 Identities=41% Similarity=0.593 Sum_probs=31.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc-CC-eEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR-GV-KSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~-g~-~v~~~e~~~ 123 (253)
.+||+|||||++|+++|++|+++ |. +|+|||+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 48999999999999999999995 85 999999974
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.37 E-value=1.5e-11 Score=114.31 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=33.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
...+||+|||||++|+++|+.|+++|++|+|+||++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3458999999999999999999999999999999754
No 72
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.36 E-value=1.7e-11 Score=109.30 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=31.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
+||+|||||++|+++|++|+++|++|+|||+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999999753
No 73
>PRK08244 hypothetical protein; Provisional
Probab=99.35 E-value=7.3e-12 Score=116.13 Aligned_cols=145 Identities=20% Similarity=0.204 Sum_probs=76.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCC-CCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHG-LGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
+||+||||||+||++|+.|+++|++|+||||.+.. ..++. ..+... ....+.. ..+.+++...+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra--~~l~~~------~~e~l~~-----lGl~~~l~~~~~~ 69 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKA--LTLHPR------TLEILDM-----RGLLERFLEKGRK 69 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce--eEecHH------HHHHHHh-----cCcHHHHHhhccc
Confidence 79999999999999999999999999999997531 01110 000000 0000000 0001111111100
Q ss_pred -c--cccccccceeeCCeeeeCCCCCCc-c-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--cc-c
Q 047483 170 -R--PWEGVIGELEVGGQFTPFPSSPPK-Y-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN--VK-L 241 (253)
Q Consensus 170 -~--~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--~~-~ 241 (253)
. .+......+ .+.......+. + +....+.+++...+++. +++++++++|++++++++++.+... ++ .
T Consensus 70 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~ 144 (493)
T PRK08244 70 LPSGHFAGLDTRL----DFSALDTSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLR 144 (493)
T ss_pred ccceEEecccccC----CcccCCCCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEEEEEEeCCccE
Confidence 0 000000000 00000000000 1 11112344444444443 6999999999999988888766532 33 4
Q ss_pred eeecCEEEEcCC
Q 047483 242 RGQFDVVVIAHN 253 (253)
Q Consensus 242 ~~~ad~VV~AtG 253 (253)
+++||+||.|||
T Consensus 145 ~i~a~~vVgADG 156 (493)
T PRK08244 145 TLTSSYVVGADG 156 (493)
T ss_pred EEEeCEEEECCC
Confidence 799999999998
No 74
>PLN02463 lycopene beta cyclase
Probab=99.35 E-value=1.6e-11 Score=112.09 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=76.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCC-ccccccccceeccCchhHHHHHHhhhhccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQ-PLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
.+||+|||||++|+++|+.|+++|++|+|+|+.+. .. .+.. +...+ .+. ...+.+.+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~-~~-------~p~~~g~w~~----~l~--~lgl~~~l~------- 86 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL-SI-------WPNNYGVWVD----EFE--ALGLLDCLD------- 86 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc-ch-------hccccchHHH----HHH--HCCcHHHHH-------
Confidence 38999999999999999999999999999998642 10 0000 00000 000 000011111
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD 246 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad 246 (253)
..|......++..... .. . ..|.. ..-..+.+.|.+++. +++++ ..+|++|+..++.+.|+++++.+++||
T Consensus 87 -~~w~~~~v~~~~~~~~-~~-~--~~y~~-V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~ 159 (447)
T PLN02463 87 -TTWPGAVVYIDDGKKK-DL-D--RPYGR-VNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQAS 159 (447)
T ss_pred -hhCCCcEEEEeCCCCc-cc-c--Cccee-EEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcC
Confidence 1222211111110000 00 0 11111 112333344444332 68886 579999998888888888887799999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||.|+|
T Consensus 160 lVI~AdG 166 (447)
T PLN02463 160 LVLDATG 166 (447)
T ss_pred EEEECcC
Confidence 9999998
No 75
>PRK06996 hypothetical protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=111.93 Aligned_cols=40 Identities=10% Similarity=-0.130 Sum_probs=34.9
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad~VV~AtG 253 (253)
+++++++++|+++++++++|+++..++ .+++||+||.|||
T Consensus 129 g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 129 PVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred CCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 589999999999998888998876543 5899999999998
No 76
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.35 E-value=6.8e-12 Score=114.67 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=34.3
Q ss_pred CcEEEcCeEEEEEEEe-------CCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPF-------NGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~-------~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|++++.+ ++.+.+++.++.+++||+||.|||
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG 180 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADG 180 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecC
Confidence 5899999999999752 456778777888999999999998
No 77
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.34 E-value=1.4e-11 Score=115.60 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh------
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG------ 162 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 162 (253)
..+||+|||||++||++|+.|+++|++|+||||... .........+... -.++++.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~-~~~~~ra~~l~~~-----------------~~~~l~~lGl~~~ 83 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT-LSTGSRAICFAKR-----------------SLEIFDRLGCGER 83 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC-CCCCCeEEEEcHH-----------------HHHHHHHcCCcHH
Confidence 347999999999999999999999999999999853 2111001111100 0111111
Q ss_pred hhhccccccccccccceeeCCeee--eC---CCC-CCccc--cCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE
Q 047483 163 WLERGLVRPWEGVIGELEVGGQFT--PF---PSS-PPKYI--GVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH 234 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~-~~~~~--~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~ 234 (253)
+...+. .|.... .+...+... .. .+. .+.+. ....+..++...+.+.++++|+++++|++++.+++++.
T Consensus 84 l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~ 160 (547)
T PRK08132 84 MVDKGV--SWNVGK-VFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT 160 (547)
T ss_pred HHhhCc--eeecee-EEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE
Confidence 101110 010000 000000110 00 000 01111 11123344444444455699999999999998888876
Q ss_pred EEe--Cccc-eeecCEEEEcCC
Q 047483 235 LSE--NVKL-RGQFDVVVIAHN 253 (253)
Q Consensus 235 v~~--~~~~-~~~ad~VV~AtG 253 (253)
+.. .++. +++||+||.|||
T Consensus 161 v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 161 LTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEECCCCcEEEEeCEEEECCC
Confidence 653 2333 689999999998
No 78
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.34 E-value=1.2e-11 Score=114.91 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
|+..+||+|||||++|+++|+.|+++|++|+||||+..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34558999999999999999999999999999999854
No 79
>PLN02676 polyamine oxidase
Probab=99.33 E-value=4.5e-11 Score=110.60 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=45.9
Q ss_pred CChHHHHHHHHhhcC--------CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 199 NGMRPLADSLLAQTS--------MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 199 ~~~~~l~~~l~~~~~--------gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
.+++++.+.|.+.+. +.+|++|++|++|++.++++.|++.++.+++||+||+|.
T Consensus 221 ~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtv 282 (487)
T PLN02676 221 RGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSV 282 (487)
T ss_pred CCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEcc
Confidence 468888888888652 257999999999999988999988887789999999985
No 80
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=6.5e-12 Score=116.22 Aligned_cols=54 Identities=35% Similarity=0.540 Sum_probs=44.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccccccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAA 146 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~ 146 (253)
.+||+|||||+.||++|..|+++|++|+||||+. ..||+..+.... ++.||.|.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~-~~GG~a~t~e~~--Gf~fd~G~ 56 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND-RVGGRARTFELD--GFRFDTGP 56 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecC-CCCcceEEEecc--ceEeccCc
Confidence 3899999999999999999999999999999985 599987765554 44455444
No 81
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.33 E-value=3e-11 Score=113.31 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
.+||+|||||++|+++|+.|+++|++|+|||++..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 38999999999999999999999999999999753
No 82
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.32 E-value=2.8e-11 Score=107.78 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=45.1
Q ss_pred CChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 199 NGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 199 ~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
.+++.+.+++.++.. -.|.++.+|.+|.+.+++++|+..+.+++.+|+||++.
T Consensus 206 GGmd~la~Afa~ql~-~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~ti 258 (450)
T COG1231 206 GGMDQLAEAFAKQLG-TRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTI 258 (450)
T ss_pred ccHHHHHHHHHHHhh-ceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEec
Confidence 457888888888765 68999999999999999999987776799999999873
No 83
>PRK11445 putative oxidoreductase; Provisional
Probab=99.32 E-value=1.5e-11 Score=109.20 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=34.0
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEe-Cccc--eeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSE-NVKL--RGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~-~~~~--~~~ad~VV~AtG 253 (253)
++++++++.|+++++++++|.+.. +++. +++||.||.|||
T Consensus 112 gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 112 SVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG 154 (351)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence 699999999999998888888764 3443 689999999998
No 84
>PRK07538 hypothetical protein; Provisional
Probab=99.32 E-value=2e-11 Score=110.66 Aligned_cols=32 Identities=44% Similarity=0.802 Sum_probs=30.9
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
||+|||||++||++|+.|+++|++|+|||+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 89999999999999999999999999999975
No 85
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.31 E-value=1.2e-11 Score=100.51 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=67.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC-CccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG-RMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
+||+|||||++||++|+.|++.|++|+|||++.. .|| .|++-.. |. ...- .+....+++++. +
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~-~GGg~~~Gg~l------f~---~iVV--q~~a~~iL~elg---i- 81 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS-PGGGMWGGGML------FN---KIVV--QEEADEILDELG---I- 81 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS--BTTTTS-CTT------------EEE--ETTTHHHHHHHT-----
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC-CCccccccccc------cc---hhhh--hhhHHHHHHhCC---c-
Confidence 8999999999999999999999999999999854 554 4433211 11 1111 111233444420 0
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhh-c-CCcEEEcCeEEEEEEEeC-CeEE---EEe------
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQ-T-SMVSIVRPCWISNLQPFN-GMWH---LSE------ 237 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~gv~i~~~t~V~~i~~~~-~~~~---v~~------ 237 (253)
.+.++. ..+.. .....+...|+.+ + .|++|+..+.|+++...+ +.+. +..
T Consensus 82 --------------~y~~~~---~g~~v-~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 82 --------------PYEEYG---DGYYV-ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA 143 (230)
T ss_dssp ----------------EE-S---SEEEE-S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred --------------eeEEeC---CeEEE-EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence 111111 11111 1222333333322 1 389999999999997665 4432 211
Q ss_pred ---CccceeecCEEEEcCC
Q 047483 238 ---NVKLRGQFDVVVIAHN 253 (253)
Q Consensus 238 ---~~~~~~~ad~VV~AtG 253 (253)
-|--.++|+.||-|||
T Consensus 144 glHvDPl~i~ak~ViDaTG 162 (230)
T PF01946_consen 144 GLHVDPLTIRAKVVIDATG 162 (230)
T ss_dssp --T-B-EEEEESEEEE---
T ss_pred hcCCCcceEEEeEEEeCCC
Confidence 1224799999999998
No 86
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.31 E-value=2.2e-11 Score=112.20 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=33.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+.++||+|||+|++|+++|+.|+++|.+|+||||..
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345899999999999999999999999999999975
No 87
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.31 E-value=1.6e-11 Score=113.34 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=32.4
Q ss_pred cEEEcCeEEEEEEEe-CCeEEEEeCccceeecCEEEEcCC
Q 047483 215 VSIVRPCWISNLQPF-NGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 215 v~i~~~t~V~~i~~~-~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
++|+++++|++|+++ ++.|.|.+.+ +.++||.||+|+|
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~-G~i~A~~VVvaAG 270 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNR-GEIRARFVVVSAC 270 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECC-CEEEeCEEEECcC
Confidence 789999999999987 5568887655 5899999999997
No 88
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.31 E-value=2.6e-11 Score=108.72 Aligned_cols=136 Identities=19% Similarity=0.164 Sum_probs=78.6
Q ss_pred cEEEECcCHHHHHHHHHH--hHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 92 HVGIIGGGMAGLACALSL--DKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l--~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
||+|||||++|+++|++| ++.|.+|+|+|+... .+ ... +....++......+.+++..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~-~~-~~~-----------~~tW~~~~~~~~~~~~~v~~------- 60 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK-PP-WPN-----------DRTWCFWEKDLGPLDSLVSH------- 60 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc-cc-ccC-----------CcccccccccccchHHHHhe-------
Confidence 899999999999999999 777999999999753 21 000 00011111111112222222
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV 248 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V 248 (253)
.|......+........ . ..|... .-..+.+.+.+++. +..++.++.|++|+..++.+.+.++++..++|+.|
T Consensus 61 -~w~~~~v~~~~~~~~~~--~--~~Y~~i-~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~V 134 (374)
T PF05834_consen 61 -RWSGWRVYFPDGSRILI--D--YPYCMI-DRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVV 134 (374)
T ss_pred -ecCceEEEeCCCceEEc--c--cceEEE-EHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEE
Confidence 33322111111111100 0 122111 11333333444333 35677889999999988888888888889999999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|.|+|
T Consensus 135 vDa~g 139 (374)
T PF05834_consen 135 VDARG 139 (374)
T ss_pred EECCC
Confidence 99987
No 89
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.30 E-value=2.7e-11 Score=109.01 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
+||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 59999999999999999999999999999996
No 90
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.30 E-value=3.5e-11 Score=108.44 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=31.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+|||||++||++|+.|+++|++|+|+|+..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 799999999999999999999999999999975
No 91
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.30 E-value=2.4e-11 Score=112.23 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeC-CeEEEEe---Ccc--ceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFN-GMWHLSE---NVK--LRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~-~~~~v~~---~~~--~~~~ad~VV~AtG 253 (253)
...+++.|.+... |++|+++++|++|++++ +.|.+.. .++ ..++||+||+|+|
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG 237 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAG 237 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCC
Confidence 5666666655442 79999999999998864 4677652 222 3689999999987
No 92
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.29 E-value=4.4e-11 Score=113.26 Aligned_cols=52 Identities=13% Similarity=-0.008 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
..+.+.|.+..+...++++++|++++..++.+.+.++++.++++|.||.|+|
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG 245 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADG 245 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCC
Confidence 4455556665543357899999999988889988888878899999999998
No 93
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.28 E-value=3.4e-11 Score=111.87 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=42.9
Q ss_pred CChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483 199 NGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 199 ~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG 253 (253)
.+...+++.|.+.+. |++|+++++|++|..+++. +.|..+++..+.||.||+|.+
T Consensus 216 gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~ 273 (502)
T TIGR02734 216 GGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNAD 273 (502)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCc
Confidence 356777777766443 7999999999999887665 567677777899999999864
No 94
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.28 E-value=1.1e-11 Score=83.67 Aligned_cols=65 Identities=37% Similarity=0.571 Sum_probs=51.8
Q ss_pred EECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccC--chhHHHHHHh
Q 047483 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVN--DSRFHELVDG 162 (253)
Q Consensus 95 iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (253)
|||||++||++|+.|+++|++|+|||+.+ ..||++.+...+ +..+|.+.+++... .+.+.+++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~-~~GG~~~~~~~~--g~~~d~g~~~~~~~~~~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND-RLGGRARSFRIP--GYRFDLGAHYFFPPDDYPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS-SSSGGGCEEEET--TEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc-ccCcceeEEEEC--CEEEeeccEEEeCCCCchHHHHHHcC
Confidence 89999999999999999999999999986 599999877664 47889998888763 3555665554
No 95
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.4e-11 Score=102.88 Aligned_cols=107 Identities=25% Similarity=0.340 Sum_probs=70.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
.+||+||||||+||++|.++++.+++ ++|+|+.. .||......
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~--~gg~~~~~~---------------------------------- 46 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE--PGGQLTKTT---------------------------------- 46 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC--cCCccccce----------------------------------
Confidence 38999999999999999999999998 77777753 443221110
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD 246 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad 246 (253)
....+++.. ....-..+.+.+.++. .++++.. ..|.+++..++.+.|.++++. ++|+
T Consensus 47 ---------------~venypg~~----~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak 105 (305)
T COG0492 47 ---------------DVENYPGFP----GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAK 105 (305)
T ss_pred ---------------eecCCCCCc----cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEe
Confidence 011111111 1011244555544443 2577776 778888776667888777654 9999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||+|||
T Consensus 106 ~vIiAtG 112 (305)
T COG0492 106 AVIIATG 112 (305)
T ss_pred EEEECcC
Confidence 9999998
No 96
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.26 E-value=1.4e-10 Score=106.90 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDT 121 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~ 121 (253)
.+||+|||||++|+++|+.|++. |.+|+|+||
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 47999999999999999999998 899999999
No 97
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.26 E-value=9.5e-11 Score=105.25 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=73.7
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP 171 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
||+|||||++|+++|+.|++.|++|+|+|+.+. .++........ ..++ ...+.+.+. ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~-~~~~~~~~~~~---~~~~---------~~~~~~~~~--------~~ 59 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP-IPGNHTYGVWD---DDLS---------DLGLADCVE--------HV 59 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC-CCCCccccccH---hhhh---------hhchhhHHh--------hc
Confidence 799999999999999999999999999999753 44321110000 0000 000011111 12
Q ss_pred ccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEe-CCeEEEEeCccceeecCEE
Q 047483 172 WEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPF-NGMWHLSENVKLRGQFDVV 248 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~-~~~~~v~~~~~~~~~ad~V 248 (253)
|............. .. ...|.. .....+.+.|.+++. +++++ ..+|.+++.+ ++.|.+..+++..++|+.|
T Consensus 60 ~~~~~~~~~~~~~~-~~---~~~~~~-i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~V 133 (388)
T TIGR01790 60 WPDVYEYRFPKQPR-KL---GTAYGS-VDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLV 133 (388)
T ss_pred CCCceEEecCCcch-hc---CCceeE-EcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEE
Confidence 22210000000000 00 011111 112333333433222 57776 5588898877 6678887777678999999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|.|+|
T Consensus 134 I~A~G 138 (388)
T TIGR01790 134 IDARG 138 (388)
T ss_pred EECCC
Confidence 99998
No 98
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.26 E-value=6.5e-11 Score=110.44 Aligned_cols=110 Identities=20% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
..+||+|||||++|+++|.+|++.|++|+|+|+. .||.+.... . ++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~---~GG~~~~~~----~--~~------------------------- 255 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER---FGGQVLDTM----G--IE------------------------- 255 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCeeeccC----c--cc-------------------------
Confidence 3589999999999999999999999999999863 566542100 0 00
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV 248 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V 248 (253)
.+..++. .....+...+...++++ +++++++++|++|.+.++.|.+...++..+.+|.|
T Consensus 256 ---------------~~~~~~~-----~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~v 314 (517)
T PRK15317 256 ---------------NFISVPE-----TEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTV 314 (517)
T ss_pred ---------------ccCCCCC-----CCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEE
Confidence 0000000 00011233333344444 59999999999999887888888777778999999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|+|||
T Consensus 315 ViAtG 319 (517)
T PRK15317 315 ILATG 319 (517)
T ss_pred EECCC
Confidence 99998
No 99
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.25 E-value=1.9e-10 Score=106.97 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+|++|+++|+.+++.|.+|+||||... .||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~-~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV-AGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC-CCC
Confidence 48999999999999999999999999999999853 555
No 100
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.25 E-value=8e-11 Score=101.33 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=44.0
Q ss_pred CChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 199 NGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 199 ~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
.+-..+++.|..... .+|.++++|..|.+-.+++.++..+|..-++|.||+|+
T Consensus 217 ggS~~yvq~laa~~~-~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAt 269 (447)
T COG2907 217 GGSRAYVQRLAADIR-GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIAT 269 (447)
T ss_pred cchHHHHHHHhcccc-ceeecCCceeeeeeCCCceEEecCCCCccccceeeeec
Confidence 345778887776653 57999999999999988888877778889999999987
No 101
>PLN02529 lysine-specific histone demethylase 1
Probab=99.24 E-value=3e-10 Score=108.85 Aligned_cols=60 Identities=35% Similarity=0.467 Sum_probs=47.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCc--cccccccceec
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQP--LIFDHAAQFFT 150 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~--~~~~~~~~~~~ 150 (253)
..||+|||||++||++|..|+++|++|+|||++. .+||+..+......+ ..+|.|+.++.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~-~~GG~~~t~~~~~~g~~~~~DlGaswi~ 221 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN-RPGGRVYTQKMGRKGQFAAVDLGGSVIT 221 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc-cCcCceeeecccCCCCceEEecCCeecc
Confidence 4799999999999999999999999999999985 599988766543211 34566666654
No 102
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.23 E-value=2.2e-10 Score=102.52 Aligned_cols=35 Identities=43% Similarity=0.713 Sum_probs=32.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
...||+|||||++|+++|++|+++|.+|+|+|+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 34899999999999999999999999999999975
No 103
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.23 E-value=1.2e-10 Score=104.93 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=31.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 799999999999999999999999999999975
No 104
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.22 E-value=7.9e-11 Score=108.62 Aligned_cols=59 Identities=31% Similarity=0.411 Sum_probs=46.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT 150 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
..+|+|||||++||+||..|.+.|++|+|||+++ .+|||..+....... ..|.|..++.
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd-RvGGRI~t~~~~~~~-~vd~Gas~~~ 73 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD-RVGGRIYTFKSEGGD-HVDLGASVLT 73 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC-CcCceeEEEecCCCC-eeecCCceec
Confidence 3799999999999999999999999999999985 699998876543221 3555555544
No 105
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.22 E-value=1.4e-10 Score=108.53 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=34.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
.+||+|||||++|+.+|+.+++.|.+|+|+|++...+|+
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 489999999999999999999999999999987444554
No 106
>PLN02697 lycopene epsilon cyclase
Probab=99.22 E-value=1.6e-10 Score=107.47 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
..+||+|||||++|+++|+.|++.|++|+|+|+... ....++ +..+ .+. ...+.+.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p-~~~n~G--------vW~~----~l~--~lgl~~~i~------- 164 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTNNYG--------VWED----EFK--DLGLEDCIE------- 164 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc-CCCccc--------cchh----HHH--hcCcHHHHH-------
Confidence 348999999999999999999999999999998532 111110 0000 000 000111111
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEE-EeCccceeec
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHL-SENVKLRGQF 245 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v-~~~~~~~~~a 245 (253)
..|......++...... .. ..|.. -.-..+.+.|.+++. ++++ ++++|++|+.+++.+.+ ..+++.+++|
T Consensus 165 -~~w~~~~v~~~~~~~~~-~~---~~Yg~-V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A 237 (529)
T PLN02697 165 -HVWRDTIVYLDDDKPIM-IG---RAYGR-VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPC 237 (529)
T ss_pred -hhcCCcEEEecCCceee-cc---CcccE-EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEEC
Confidence 12322211111110100 00 11110 112334444444332 6887 67899999887776653 4556678999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
+.||+|+|
T Consensus 238 ~lVI~AdG 245 (529)
T PLN02697 238 RLATVASG 245 (529)
T ss_pred CEEEECCC
Confidence 99999998
No 107
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.21 E-value=1.6e-10 Score=103.24 Aligned_cols=57 Identities=30% Similarity=0.557 Sum_probs=43.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT 150 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
.+|+|||||++||++|.+|.+.| .+|+|||..+ .+|||+.+..+.+. .++.|+++..
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d-RIGGRI~ti~~~d~--~ielGAqwih 79 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASD-RIGGRIHTIPFADG--VIELGAQWIH 79 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEecc-ccCceEeeEEcCCC--eEeecceeec
Confidence 58999999999999999999775 6899999875 69999877655432 3344444433
No 108
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.21 E-value=1.5e-11 Score=112.04 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=35.8
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP 171 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
||||||||++|++||+.+++.|.+|+|+|+.. ..||........ .++ + .+... .....+..++.+.-...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~-~lGG~~t~~~~~----~~~-~--~~~~~-~~~~gi~~e~~~~~~~~- 70 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG-FLGGMATSGGVS----PFD-G--NHDED-QVIGGIFREFLNRLRAR- 70 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS-SSTGGGGGSSS-----EET-T--EEHHH-HHHHHHHHHHHHST----
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc-cCCCcceECCcC----Chh-h--cchhh-ccCCCHHHHHHHHHhhh-
Confidence 89999999999999999999999999999985 588755332211 010 0 00000 11122222221110000
Q ss_pred ccccccceeeCCeeeeCCCCCC-ccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeC---ccceeecC
Q 047483 172 WEGVIGELEVGGQFTPFPSSPP-KYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSEN---VKLRGQFD 246 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~---~~~~~~ad 246 (253)
... ......+|.. ..+....+..+++.++.+ .|++|++++.|.++..+++.+ .|... +...++|+
T Consensus 71 -----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~ 140 (428)
T PF12831_consen 71 -----GGY----PQEDRYGWVSNVPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAK 140 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccc----ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 000 0000011110 011112234555555544 369999999999999887553 23322 35689999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||.|||
T Consensus 141 ~~IDaTG 147 (428)
T PF12831_consen 141 VFIDATG 147 (428)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9999997
No 109
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.21 E-value=1.8e-10 Score=107.40 Aligned_cols=110 Identities=15% Similarity=0.267 Sum_probs=74.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
..+||+|||||++|+++|+.|++.|++|+|+|.. .||.+... .. +. .
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~---~GG~~~~~----~~--~~------------------~------ 257 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER---IGGQVKDT----VG--IE------------------N------ 257 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCccccC----cC--cc------------------c------
Confidence 3589999999999999999999999999999852 56654210 00 00 0
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEE
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVV 248 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~V 248 (253)
+...+.. ....+...+...+++. +++++++++|++|...++.+.+..+++..+.+|.|
T Consensus 258 ----------------~~~~~~~-----~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~l 315 (515)
T TIGR03140 258 ----------------LISVPYT-----TGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSV 315 (515)
T ss_pred ----------------ccccCCC-----CHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 0000000 0001122222223333 69999999999998877778887777778999999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|+|||
T Consensus 316 IlAtG 320 (515)
T TIGR03140 316 IVATG 320 (515)
T ss_pred EECCC
Confidence 99998
No 110
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.20 E-value=1.3e-10 Score=107.88 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=42.1
Q ss_pred CChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483 199 NGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 199 ~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG 253 (253)
.+...+++.|.+... |++|+++++|++|..+++. +.|...++..++||.||+|.|
T Consensus 226 gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~ 283 (493)
T TIGR02730 226 GGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNAT 283 (493)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence 356777777766543 7999999999999877554 456566777899999999865
No 111
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.20 E-value=1.6e-10 Score=105.85 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=31.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 899999999999999999999999999999974
No 112
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.20 E-value=1.5e-10 Score=110.28 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGN 123 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~ 123 (253)
+.++||+||||||+||++|+.|++. |++|+|||+.+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 3458999999999999999999995 99999999974
No 113
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.20 E-value=2e-10 Score=106.31 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
.+||+|||||++|+++|++|++. |.+|+||||..
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 37999999999999999999985 78999999974
No 114
>PRK09897 hypothetical protein; Provisional
Probab=99.20 E-value=2.2e-10 Score=106.61 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=80.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCCCCCC-CCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGNHGLG-GRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG 167 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
.+|+|||||++|+++|.+|.+.+ ++|+|||++.. .| |.......+...+......... +....-+.+|....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~-~G~G~ays~~~~~~~L~~N~~~~~~----p~~~~~f~~Wl~~~ 76 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE-AGVGMPYSDEENSKMMLANIASIEI----PPIYCTYLEWLQKQ 76 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC-CCcceeecCCCChHHHHhccccccc----CCChHHHHHHhhhh
Confidence 48999999999999999998864 69999999743 55 3211110000000000000000 00011122222211
Q ss_pred ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--C--cEEEcCeEEEEEEEeCCeEEEEeCc-cce
Q 047483 168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--M--VSIVRPCWISNLQPFNGMWHLSENV-KLR 242 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--g--v~i~~~t~V~~i~~~~~~~~v~~~~-~~~ 242 (253)
... |..... .+. .........++......++..++.+.+.+. | +.++.+++|++|+..+++|.+.+++ +..
T Consensus 77 ~~~-~~~~~g-~~~--~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~ 152 (534)
T PRK09897 77 EDS-HLQRYG-VKK--ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS 152 (534)
T ss_pred hHH-HHHhcC-Ccc--eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeE
Confidence 100 000000 000 000000111222222234555555555432 3 6788899999999988899887654 467
Q ss_pred eecCEEEEcCC
Q 047483 243 GQFDVVVIAHN 253 (253)
Q Consensus 243 ~~ad~VV~AtG 253 (253)
+.||.||+|+|
T Consensus 153 i~aD~VVLAtG 163 (534)
T PRK09897 153 ETFDLAVIATG 163 (534)
T ss_pred EEcCEEEECCC
Confidence 99999999998
No 115
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.19 E-value=2.4e-10 Score=103.68 Aligned_cols=36 Identities=44% Similarity=0.800 Sum_probs=31.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
||+|||+|++||++|+.++++|.+|+|+||... .||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~-~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR-LGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG-GGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc-ccc
Confidence 899999999999999999999999999999853 455
No 116
>PLN03000 amine oxidase
Probab=99.19 E-value=6e-10 Score=107.66 Aligned_cols=60 Identities=32% Similarity=0.431 Sum_probs=48.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCC--Cccccccccceec
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGP--QPLIFDHAAQFFT 150 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~~ 150 (253)
..+|+|||||++||.+|+.|.+.|++|+|+|++. .+||++.+..... .+..+|.|+.++.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~-riGGRi~T~~~~g~~~~~~~DlGas~i~ 245 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK-RPGGRVYTKKMEANRVGAAADLGGSVLT 245 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC-cCCCCcceecccCCCCceEeecCCeEEe
Confidence 4799999999999999999999999999999985 5999988766432 1345566665554
No 117
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.18 E-value=3.8e-10 Score=108.83 Aligned_cols=51 Identities=10% Similarity=-0.083 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcC
Q 047483 198 VNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAH 252 (253)
Q Consensus 198 ~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~At 252 (253)
..++..+.++|++.. .|++|++|++|.+.+++|.+. .++.+++||+||+|.
T Consensus 433 ~GG~~~Li~aLa~~L---~I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTv 483 (808)
T PLN02328 433 PGGNDTFVRELAKDL---PIFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTV 483 (808)
T ss_pred CCcHHHHHHHHHhhC---CcccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECC
Confidence 357889999998864 599999999999998888874 456789999999985
No 118
>PLN02985 squalene monooxygenase
Probab=99.18 E-value=5.5e-10 Score=103.96 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+||+|||||++|+++|+.|+++|++|+|+||..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 34899999999999999999999999999999974
No 119
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.17 E-value=1.9e-10 Score=102.90 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=73.0
Q ss_pred cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
||+|||||++|+++|+.|++. |++|+|+|+++. .++.. ...+ +.... .+....+...-..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~~~-tw~~-------------~~~~~---~~~~~~~~~~~v~ 62 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGGNH-TWSF-------------FDSDL---SDAQHAWLADLVQ 62 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCCcc-ccee-------------ccccc---chhhhhhhhhhhe
Confidence 799999999999999999987 999999999753 33311 0011 10000 0011111111112
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
..|......+....... . ..|.... -..+.+.+.++++ ..++++++|+++ +.+++++ +++.+++|+.||
T Consensus 63 ~~W~~~~v~~~~~~~~l--~---~~Y~~I~-r~~f~~~l~~~l~-~~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI 131 (370)
T TIGR01789 63 TDWPGYEVRFPKYRRKL--K---TAYRSMT-STRFHEGLLQAFP-EGVILGRKAVGL--DADGVDL--APGTRINARSVI 131 (370)
T ss_pred EeCCCCEEECcchhhhc--C---CCceEEE-HHHHHHHHHHhhc-ccEEecCEEEEE--eCCEEEE--CCCCEEEeeEEE
Confidence 23433211111000000 0 1111111 1445555555554 337889999988 3455655 567889999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
.|+|
T Consensus 132 ~A~G 135 (370)
T TIGR01789 132 DCRG 135 (370)
T ss_pred ECCC
Confidence 9997
No 120
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.17 E-value=2.6e-10 Score=104.09 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||++|+.+. .|.+|+|+||...
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 489999999999999999984 7999999999853
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.17 E-value=3.1e-10 Score=106.72 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=69.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
.+||+|||||++||++|+.|+++|++|+|||++. .||.+.....
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~--~GG~~~~~~~---------------------------------- 47 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD--FGGQITITSE---------------------------------- 47 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC--CCceEEeccc----------------------------------
Confidence 4899999999999999999999999999999863 6664321000
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHH---HHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecC
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADS---LLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFD 246 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad 246 (253)
...+++.. .. ....+++. .+++. +++++ ++.|+++..+++.+.+.+.+ +.+.++
T Consensus 48 ---------------i~~~pg~~--~~---~~~~l~~~l~~~~~~~-gv~~~-~~~V~~i~~~~~~~~V~~~~-g~~~a~ 104 (555)
T TIGR03143 48 ---------------VVNYPGIL--NT---TGPELMQEMRQQAQDF-GVKFL-QAEVLDVDFDGDIKTIKTAR-GDYKTL 104 (555)
T ss_pred ---------------cccCCCCc--CC---CHHHHHHHHHHHHHHc-CCEEe-ccEEEEEEecCCEEEEEecC-CEEEEe
Confidence 00000000 00 01222222 22333 57775 77899998777667776654 478999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||+|||
T Consensus 105 ~lVlATG 111 (555)
T TIGR03143 105 AVLIATG 111 (555)
T ss_pred EEEECCC
Confidence 9999998
No 122
>PRK10262 thioredoxin reductase; Provisional
Probab=99.17 E-value=4.3e-10 Score=98.61 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=69.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
.+||+|||||++||++|..|+++|++|++||+.. .||.+.... .
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~--~gg~~~~~~------------~---------------------- 49 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME--KGGQLTTTT------------E---------------------- 49 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec--CCCceecCc------------e----------------------
Confidence 4899999999999999999999999999999652 566432110 0
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
++.+++.. .......+.+.+....+.+. .+++++ .|+.|+..++.|.+..+. ..+.+|.||
T Consensus 50 ---------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vi 110 (321)
T PRK10262 50 ---------------VENWPGDP-NDLTGPLLMERMHEHATKFE-TEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALI 110 (321)
T ss_pred ---------------ECCCCCCC-CCCCHHHHHHHHHHHHHHCC-CEEEee-EEEEEEecCCeEEEEecC-CEEEECEEE
Confidence 00001100 00000112233333333333 566665 577888878888886543 478999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|||
T Consensus 111 lAtG 114 (321)
T PRK10262 111 IATG 114 (321)
T ss_pred ECCC
Confidence 9998
No 123
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.17 E-value=5.3e-10 Score=102.20 Aligned_cols=36 Identities=36% Similarity=0.646 Sum_probs=32.7
Q ss_pred cEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGG 128 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg 128 (253)
||+|||+|++|+++|+.++++| .+|+||||... .||
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~-~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV-IGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC-CCC
Confidence 7999999999999999999999 99999999853 444
No 124
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.15 E-value=7.1e-10 Score=100.21 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=31.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+||||||+|+++|+.|+++|++|+|+||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999999999974
No 125
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.14 E-value=4.7e-10 Score=103.38 Aligned_cols=33 Identities=48% Similarity=0.866 Sum_probs=31.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999974
No 126
>PLN02612 phytoene desaturase
Probab=99.13 E-value=2.2e-09 Score=101.18 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=53.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
...+|+|||||++||++|++|.++|++|+|+|++. ..||+..+.... .+..+|.|.+++....+.+.+++++
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~-~~gG~~~s~~~~-~G~~~D~G~h~~~g~~~~~~~ll~e 163 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD-VLGGKVAAWKDE-DGDWYETGLHIFFGAYPNVQNLFGE 163 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-CCCCcceeeEcC-CCCEEcCCceEEeCCCchHHHHHHH
Confidence 34799999999999999999999999999999985 488887654321 2456777777666554444444443
No 127
>PTZ00367 squalene epoxidase; Provisional
Probab=99.13 E-value=7e-10 Score=104.12 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4899999999999999999999999999999964
No 128
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.12 E-value=7.5e-10 Score=105.34 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=32.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||||++|+++|+.|+++|++|+|||++..
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 48999999999999999999999999999999854
No 129
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.12 E-value=7.7e-10 Score=105.01 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=32.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~ 124 (253)
+||+|||+|.+||++|+.+++. |.+|+|+||+..
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 7999999999999999999998 999999999853
No 130
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.12 E-value=6.6e-10 Score=104.16 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|++||++|+.+++.|.+|+|+||...
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 38999999999999999999999999999999853
No 131
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.12 E-value=8.3e-10 Score=100.70 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=39.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
+.++||+|||+|++|+.+|..|++.|.+|+++|++. ..||++.+
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~-~yGG~~as 45 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP-YYGGESAS 45 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCC-CcCccccc
Confidence 456999999999999999999999999999999986 58887764
No 132
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.10 E-value=1.1e-09 Score=103.55 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
+||+|||+|++||+||+.+++. |.+|+|+||..
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 7999999999999999999987 58999999975
No 133
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.10 E-value=8.6e-10 Score=102.23 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
+||+|||+|++||++|+.+++.|. |+|+||...
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 799999999999999999999998 999999853
No 134
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.10 E-value=3.7e-10 Score=100.55 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=72.8
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccccc
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVRP 171 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
||+|||||.+|+.||+.+++.|.+|+|+....+..|...-...+ +.. ....+..-++.+. +..-.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsi---------gg~----~kg~L~~Eidalg--g~m~~ 65 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSI---------GGI----AKGHLVREIDALG--GLMGR 65 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEE---------EST----THHHHHHHHHHTT---SHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhh---------ccc----cccchhHHHhhhh--hHHHH
Confidence 79999999999999999999999999994332223322111111 110 1111111111110 11100
Q ss_pred cccccc-ceeeCCeeeeCCCCCCcc-ccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE-EEEeCccceeecCEE
Q 047483 172 WEGVIG-ELEVGGQFTPFPSSPPKY-IGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW-HLSENVKLRGQFDVV 248 (253)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~-~v~~~~~~~~~ad~V 248 (253)
+.+... .+.....-...+.+.+++ .....+...++..++..++++|+ +.+|++|..+++.+ -|.+.++..+.+|.|
T Consensus 66 ~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~v 144 (392)
T PF01134_consen 66 AADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAV 144 (392)
T ss_dssp HHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEE
T ss_pred HHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEE
Confidence 000000 000000000011121111 11112355566666666789987 57899998887765 466778889999999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|+|||
T Consensus 145 VlaTG 149 (392)
T PF01134_consen 145 VLATG 149 (392)
T ss_dssp EE-TT
T ss_pred EEecc
Confidence 99998
No 135
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.09 E-value=1.5e-09 Score=102.40 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=31.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~ 124 (253)
+||+|||+|++||++|+.+++. |.+|+|+||...
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 7999999999999999999987 589999999753
No 136
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.09 E-value=1.1e-09 Score=103.36 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=30.9
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
||+|||+|++||++|+.++++|.+|+|+||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 79999999999999999999999999999975
No 137
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=1.3e-09 Score=100.55 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=37.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
..+||+|||||++|+++|..|++.|++|+|+|+. ..||.+-.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG--KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCcceEc
Confidence 3589999999999999999999999999999986 37887643
No 138
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.09 E-value=6.5e-10 Score=97.94 Aligned_cols=34 Identities=41% Similarity=0.850 Sum_probs=32.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
.+|+|||||++||++|..|.++|++|+|+|+...
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 6899999999999999999999999999999754
No 139
>PRK07121 hypothetical protein; Validated
Probab=99.07 E-value=2.5e-09 Score=99.20 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+|.+||++|++++++|.+|+||||... .||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~-~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG-AGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC-CCC
Confidence 38999999999999999999999999999999853 454
No 140
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=93.53 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=33.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
....||+|||||+-|+++|++|+++|.++.++|+-+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 345899999999999999999999999999999964
No 141
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.07 E-value=1.3e-09 Score=99.66 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=36.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+||+|||||++|+++|+.|+++|++|+|+|+.....||.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 489999999999999999999999999999987434677653
No 142
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.06 E-value=1.2e-09 Score=100.10 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=36.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
++||+|||||++|+++|+.++++|++|+|+|+. ..||.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~--~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP--RVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC--ccCceeec
Confidence 389999999999999999999999999999985 37887643
No 143
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.06 E-value=3e-09 Score=99.99 Aligned_cols=41 Identities=37% Similarity=0.655 Sum_probs=35.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC-CCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH-GLGGR 129 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~-~~gg~ 129 (253)
.++||+|||+|.+||++|+.+++.|.+|+||||... ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 348999999999999999999999999999999862 24553
No 144
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.06 E-value=1.5e-09 Score=101.03 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||++|+.+++ |.+|+|+||...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999976 899999999853
No 145
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=6.2e-10 Score=105.10 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=31.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
++||+|||||++||+||+.+++. |.+|+|+||..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 47999999999999999999987 48999999975
No 146
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.05 E-value=5.1e-09 Score=97.25 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=44.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCccccccCCCccccccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQ 147 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~ 147 (253)
.+|+|||||++||++|+.|.+. |.+|+|||+.. ..||++.+......++.++.|..
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~-~~GG~~~~~~~~~~Gy~~~~G~~ 82 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD-VPGGSLDGAGNPEKGYVARGGRE 82 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC-CCCCCccCcccccCCEEEECCCC
Confidence 6899999999999999999995 68999999986 58998876443334555555543
No 147
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=2.6e-09 Score=100.69 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|.+||++|+.+++.|.+|+|+||..
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 3899999999999999999999999999999974
No 148
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=1.2e-09 Score=102.52 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=32.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+|.+||+||+.+ +.|.+|+|+||.....||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG 44 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSG 44 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCc
Confidence 37999999999999999999 999999999997532343
No 149
>PRK06370 mercuric reductase; Validated
Probab=99.04 E-value=2.4e-09 Score=98.65 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=37.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
+.++||+|||||++|+++|+.|++.|++|+|+|+.. .||.+..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~--~GG~c~~ 45 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL--LGGTCVN 45 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc--cCCceec
Confidence 445999999999999999999999999999999863 6776543
No 150
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.03 E-value=1.1e-09 Score=100.82 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=36.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+||+|||||++|+.+|+.|++.|++|+|+|++. ..||.+.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~-~~GG~~~ 45 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR-NVGGGCT 45 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc-ccccccc
Confidence 4899999999999999999999999999999964 4788653
No 151
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.03 E-value=4.9e-09 Score=96.45 Aligned_cols=39 Identities=31% Similarity=0.546 Sum_probs=35.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG 127 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g 127 (253)
..+||+|||||++|+.+|+.++.+|++|+|+|+++...|
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG 49 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence 458999999999999999999999999999999865444
No 152
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.03 E-value=3.4e-09 Score=97.81 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=36.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+||+|||||++|+.+|..|++.|++|+|+|+.+ ..||.+-
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~~GG~c~ 44 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS-TLGGVCL 44 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-ccccccc
Confidence 4899999999999999999999999999999864 4777653
No 153
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=5.6e-09 Score=98.73 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcC---CeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRG---VKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g---~~v~~~e~~~ 123 (253)
++||+|||+|++||++|+.+++.| .+|+|+||..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 379999999999999999999998 8999999975
No 154
>PRK06116 glutathione reductase; Validated
Probab=99.02 E-value=2.6e-09 Score=98.02 Aligned_cols=40 Identities=33% Similarity=0.484 Sum_probs=36.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+||+|||||++|+++|+.|+++|++|+|+|+. ..||.+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~--~~GG~c~ 43 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK--RLGGTCV 43 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc--chhhhhh
Confidence 489999999999999999999999999999986 3787653
No 155
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=2e-09 Score=102.47 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=32.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 3799999999999999999999999999999975
No 156
>PRK14694 putative mercuric reductase; Provisional
Probab=99.01 E-value=4e-09 Score=97.32 Aligned_cols=41 Identities=32% Similarity=0.643 Sum_probs=36.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
.+||+|||||++|+++|..|++.|++|+|+|++ ..||.|..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~--~~GGtc~n 46 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG--TIGGTCVN 46 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc--ccccceec
Confidence 489999999999999999999999999999986 37887743
No 157
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.99 E-value=2.8e-09 Score=97.46 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
.+||+|||||++|+++|..|++.|++|+|+|+.....||.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 48999999999999999999999999999999743357754
No 158
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=4.4e-09 Score=100.39 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|.+||++|+.+++.|.+|+|+||..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3799999999999999999999999999999853
No 159
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.99 E-value=4.3e-09 Score=96.10 Aligned_cols=30 Identities=30% Similarity=0.684 Sum_probs=28.3
Q ss_pred EECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 95 IIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 95 iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
|||+|++|+++|+.++++|.+|+||||...
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999753
No 160
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=5.9e-09 Score=98.87 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4899999999999999999999999999999974
No 161
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=9.7e-09 Score=97.27 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|.+||++|+.+++.|.+|+||||..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 3899999999999999999999999999999974
No 162
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.98 E-value=5.2e-09 Score=96.08 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=36.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
++||+|||||++|+.+|+.|++.|++|+|+|+. ..||.+-.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~--~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK--KLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc--ccccceec
Confidence 489999999999999999999999999999986 37887643
No 163
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.97 E-value=3.5e-09 Score=101.29 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 38999999999999999999999999999999753
No 164
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=6.5e-09 Score=95.69 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=36.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
.+||+|||||++|+++|..|+++|++|+|+|+.. .||.+..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~--~GG~c~~ 44 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK--LGGTCLN 44 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc--cccceee
Confidence 3899999999999999999999999999999873 7887643
No 165
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=4.3e-09 Score=99.61 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=32.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 37999999999999999999999999999999853
No 166
>PRK08275 putative oxidoreductase; Provisional
Probab=98.96 E-value=6.5e-09 Score=97.83 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=31.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~ 124 (253)
+||+|||+|.+||+||+.+++. |.+|+|+||...
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 7999999999999999999987 789999999864
No 167
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.95 E-value=5.4e-09 Score=98.20 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||+||+.++ .|.+|+|+||...
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 489999999999999999996 4999999999853
No 168
>PLN02976 amine oxidase
Probab=98.95 E-value=1.2e-08 Score=102.35 Aligned_cols=43 Identities=33% Similarity=0.585 Sum_probs=38.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
..||+|||||++|+++|+.|.+.|++|+|||++. .+||++.+.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~-~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS-RIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc-CCCCceeec
Confidence 4789999999999999999999999999999985 588887654
No 169
>PLN02815 L-aspartate oxidase
Probab=98.95 E-value=9.7e-09 Score=97.10 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||++|+.+++.| +|+|+||...
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 489999999999999999999999 9999999753
No 170
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.95 E-value=7.8e-09 Score=98.51 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=31.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+|||+|++||++|+.+++.|.+|+|+||..
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 799999999999999999999999999999975
No 171
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.94 E-value=6.2e-09 Score=95.98 Aligned_cols=42 Identities=31% Similarity=0.459 Sum_probs=36.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
.+||+|||||++|+.+|..++++|++|+|+|+.. ..||.+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~-~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS-TLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-ceeeeecc
Confidence 3899999999999999999999999999999753 37887644
No 172
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.94 E-value=9.2e-09 Score=97.84 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 38999999999999999999999999999999753
No 173
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=7.4e-09 Score=98.04 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=32.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
..||+|||+|++||++|+.+++.|.+|+|+||...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 46999999999999999999999999999999753
No 174
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.94 E-value=3.2e-09 Score=97.84 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
.+||+|||||++|+++|..|++.|++|+|+|++ ..||.+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~--~~GG~c~~ 44 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK--YWGGVCLN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCceec
Confidence 489999999999999999999999999999986 37776643
No 175
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.94 E-value=1.2e-08 Score=93.85 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=36.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
+||+|||||++|+.+|+.|++.|++|+|+|+. ..||.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~--~~GG~~~~ 41 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE--YLGGTCLN 41 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCceee
Confidence 79999999999999999999999999999983 37887643
No 176
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.93 E-value=7.6e-09 Score=92.79 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 100 MAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 100 ~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++||+||+.|+++|++|+|||+.. .+||++.+...+..++.+|.|.+.+......+..++.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~-r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASD-RVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSS-SSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCC-CCCcceEEecCCccceeecCCcccccccchhhHHHHHH
Confidence 689999999999999999999986 69999988776544578899999887554444444443
No 177
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.92 E-value=1.2e-08 Score=94.40 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT 121 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 121 (253)
.+|++|||||++|+++|+.+++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 48999999999999999999999999999998
No 178
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.92 E-value=5.7e-09 Score=84.87 Aligned_cols=32 Identities=44% Similarity=0.694 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
||+|||||++|+++|..|++.+.+|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998864
No 179
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.91 E-value=1.5e-08 Score=93.79 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCC-eEEEEeCccceeecCEEEEcCC
Q 047483 200 GMRPLADSLLAQTS--MVSIVRPCWISNLQPFNG-MWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 200 ~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~-~~~v~~~~~~~~~ad~VV~AtG 253 (253)
++..+|++|+.... |+.|..|++|++|.-..+ .|-|.+. -+.+++..||.|+|
T Consensus 185 DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~-~G~iet~~~VNaaG 240 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETP-HGSIETECVVNAAG 240 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceecc-CcceecceEEechh
Confidence 46778888776543 799999999999976544 4556544 47899999999998
No 180
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.91 E-value=1.2e-08 Score=70.99 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=30.3
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 48999999999999999999999999999975
No 181
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.90 E-value=7.3e-09 Score=96.59 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|++||++|+.++ |.+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 489999999999999999997 579999999853
No 182
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=8.3e-09 Score=97.62 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|++||++|+.+++. .+|+|+||..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 48999999999999999999987 9999999975
No 183
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.89 E-value=2.9e-08 Score=93.91 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=34.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
++||+|||+|++|+++|+.++++|++|+||||... .||.
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~-~gg~ 50 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV-FGGT 50 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC-CCcc
Confidence 48999999999999999999999999999999753 5553
No 184
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.88 E-value=3.4e-09 Score=93.77 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=73.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccc-cccCCCccccccccceeccCch----hHHHHHHhhh
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVNDS----RFHELVDGWL 164 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 164 (253)
+|+++||.||++|++|..|.+.+ .++..||+.+. -.|.. ...+...+....-..+....++ .+...+.+
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~---f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~-- 77 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS---FSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHE-- 77 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHH--
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC---CCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHH--
Confidence 79999999999999999999986 99999998753 11211 1112111111111222221111 11222221
Q ss_pred hccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCC----eEEEEe---
Q 047483 165 ERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNG----MWHLSE--- 237 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~----~~~v~~--- 237 (253)
.+....|.. .+ ..+.......++++..+++++ -.++++++|++|+..++ .|.|.+
T Consensus 78 -~~rl~~f~~-------~~---------~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~ 139 (341)
T PF13434_consen 78 -HGRLYEFYN-------RG---------YFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPDDDGDEDLFRVTTRDS 139 (341)
T ss_dssp -TT-HHHHHH-------H-----------SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEEEETTEEEEEEEEEET
T ss_pred -cCChhhhhh-------cC---------CCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEecCCCccEEEEEEeec
Confidence 111111100 00 011122235788888888886 45899999999987654 488876
Q ss_pred -CccceeecCEEEEcCC
Q 047483 238 -NVKLRGQFDVVVIAHN 253 (253)
Q Consensus 238 -~~~~~~~ad~VV~AtG 253 (253)
.++..+.|+.||+|+|
T Consensus 140 ~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 140 DGDGETYRARNVVLATG 156 (341)
T ss_dssp TS-EEEEEESEEEE---
T ss_pred CCCeeEEEeCeEEECcC
Confidence 2457899999999998
No 185
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.88 E-value=3e-08 Score=92.94 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=31.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+|||||++|+.+|+.+++.|.+|+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999874
No 186
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.88 E-value=2.6e-08 Score=92.90 Aligned_cols=37 Identities=24% Similarity=0.552 Sum_probs=33.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+| +||++|+++++.|.+|+||||... .||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~-~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK-FGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC-CCc
Confidence 4899999999 999999999999999999999753 444
No 187
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.88 E-value=4.8e-08 Score=92.37 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+|++|+++|+.++++|.+|+|+||... .||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~-~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV-FGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC-CCC
Confidence 48999999999999999999999999999999853 454
No 188
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.87 E-value=8.9e-09 Score=101.86 Aligned_cols=40 Identities=35% Similarity=0.627 Sum_probs=36.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~-~~GG~l 345 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH-DLGGVL 345 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC-CCCceE
Confidence 5799999999999999999999999999999974 477754
No 189
>PRK12839 hypothetical protein; Provisional
Probab=98.87 E-value=4.6e-08 Score=92.29 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=35.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
.++||+|||+|.+|+++|+.|+++|.+|+||||+. ..||.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~-~~gg~ 46 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS-TCGGA 46 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCcc
Confidence 45899999999999999999999999999999975 35554
No 190
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.86 E-value=2.8e-08 Score=93.21 Aligned_cols=34 Identities=38% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
++||+|||+|++||++|+.+++. .+|+|+||...
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 48999999999999999999987 89999999853
No 191
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.86 E-value=6.1e-08 Score=87.17 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=39.7
Q ss_pred hHHHHHHHHhh---cCCcEEEcCeEEEEEEEeCCe-EEEEe-----CccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQ---TSMVSIVRPCWISNLQPFNGM-WHLSE-----NVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~---~~gv~i~~~t~V~~i~~~~~~-~~v~~-----~~~~~~~ad~VV~AtG 253 (253)
+..+.+.|.+. .++++++++++|++|++.+++ |.|.. .+...++|+.|++..|
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence 44555554442 347999999999999998666 98863 2446899999999876
No 192
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.85 E-value=2.9e-08 Score=94.26 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=29.7
Q ss_pred EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
|+|||+|++||++|+.+++.|.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899999999999999999999999999975
No 193
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=5.1e-09 Score=94.96 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=55.8
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+|+|+|||++||+||+.|+++|++|+|+|+++ ..||..++... ..+...++|.+.|......+..++.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~-~~GGk~~s~~~-~dg~~~E~glh~f~~~Y~n~~~ll~~ 70 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARD-RLGGKVASWRD-SDGNHVEHGLHVFFGCYYNLLTLLKE 70 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccC-ccCceeeeeec-CCCCeeeeeeEEechhHHHHHHHhhh
Confidence 79999999999999999999999999999996 59998876544 34567788888887665555555544
No 194
>PTZ00058 glutathione reductase; Provisional
Probab=98.84 E-value=4.3e-08 Score=92.08 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=37.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
++||+|||||++|+.+|+.+++.|.+|+|+|++ ..||.+-+.
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~--~~GGtCln~ 89 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD--YLGGTCVNV 89 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc--ccccccccc
Confidence 389999999999999999999999999999986 378876543
No 195
>PRK13748 putative mercuric reductase; Provisional
Probab=98.83 E-value=2.7e-08 Score=93.77 Aligned_cols=41 Identities=34% Similarity=0.583 Sum_probs=37.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
.+||+|||||++|+.+|..|++.|++|+|+|++ ..||.+-.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~--~~GG~c~n 138 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG--TIGGTCVN 138 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC--cceeeccc
Confidence 489999999999999999999999999999986 37887644
No 196
>PLN02546 glutathione reductase
Probab=98.83 E-value=1.1e-07 Score=89.33 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT 121 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 121 (253)
++||+|||+|++|..+|..+++.|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 48999999999999999999999999999996
No 197
>PRK14727 putative mercuric reductase; Provisional
Probab=98.83 E-value=4.5e-08 Score=90.62 Aligned_cols=42 Identities=31% Similarity=0.542 Sum_probs=37.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
++||+|||+|++|+.+|+.|++.|.+|+|+|++. ..||.|-.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~-~~GG~c~n 57 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD-VIGGCCVN 57 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-cceeEecc
Confidence 3899999999999999999999999999999874 47887754
No 198
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.83 E-value=5.5e-08 Score=98.58 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=35.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
.++||+|||+|.+|+++|+.+++.|.+|+|+||... .||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~-~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK-LGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC-CCCc
Confidence 348999999999999999999999999999999853 5553
No 199
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.83 E-value=2.3e-08 Score=91.54 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=29.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 123 (253)
+|+|||||++|+++|..|++.+ .+|+|||+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999875 5999999975
No 200
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.83 E-value=7.7e-09 Score=95.93 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=48.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceec
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFT 150 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
.||+|||||++||++|..|+++|++|+|||++. ..||+..+... .++.+|.|.+++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~-~~GG~~~t~~~--~G~~fD~G~~~~~ 58 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA-QPGGCAGTFRR--RGFTFDVGATQVA 58 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC-CCCCccceecc--CCEEEeecceEEE
Confidence 689999999999999999999999999999985 59998877654 3567777776664
No 201
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.82 E-value=3.5e-08 Score=87.12 Aligned_cols=146 Identities=21% Similarity=0.237 Sum_probs=81.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHc------CCeEEEEcCCCCCCCCCcccc-ccCCCccccccccceeccCchhHHHHH
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKR------GVKSTVFDTGNHGLGGRMGTR-MIGPQPLIFDHAAQFFTVNDSRFHELV 160 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~------g~~v~~~e~~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
..++||+|||||++||++|++|.+. .++|+|+||+. .+||..-.- .++ ...+.+++
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa-~~GghtlSGavie----------------p~aldEL~ 136 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAA-EVGGHTLSGAVIE----------------PGALDELL 136 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecc-ccCCceecceeec----------------cchhhhhC
Confidence 3558999999999999999999773 58999999986 477755321 121 11223444
Q ss_pred Hhhhhcccccc--cc-ccccceeeCCeeeeCCCCC-----CccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeC
Q 047483 161 DGWLERGLVRP--WE-GVIGELEVGGQFTPFPSSP-----PKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFN 230 (253)
Q Consensus 161 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~ 230 (253)
.+|.+.+.... .. +.+..+...+ ..+.+-.. ..|+ ..+.++++.|.++.. |++|.-+..+.++-.++
T Consensus 137 P~wke~~apl~t~vT~d~~~fLt~~~-~i~vPv~~pm~NhGNYv--v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~e 213 (621)
T KOG2415|consen 137 PDWKEDGAPLNTPVTSDKFKFLTGKG-RISVPVPSPMDNHGNYV--VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDE 213 (621)
T ss_pred cchhhcCCcccccccccceeeeccCc-eeecCCCcccccCCcEE--EEHHHHHHHHHHHHHhhCceeccccchhheeEcC
Confidence 44432221110 00 1111111111 11111111 1222 247788888877655 78888887777776553
Q ss_pred Ce-EE-EE---------------eCccceeecCEEEEcCC
Q 047483 231 GM-WH-LS---------------ENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 231 ~~-~~-v~---------------~~~~~~~~ad~VV~AtG 253 (253)
++ +. |. ++.|-.+.|+.-|.|-|
T Consensus 214 dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 214 DGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred CCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 32 22 11 22344678888888765
No 202
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.82 E-value=3.9e-08 Score=98.26 Aligned_cols=40 Identities=33% Similarity=0.537 Sum_probs=35.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
.+||+|||||++||++|+.|++.|++|+|+|++. ..||.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~-~~GG~~ 202 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP-EAGGSL 202 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCCCee
Confidence 4799999999999999999999999999999975 366654
No 203
>PLN02507 glutathione reductase
Probab=98.82 E-value=4.1e-08 Score=91.29 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT 121 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 121 (253)
.+||+|||||++|+.+|..+++.|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 48999999999999999999999999999997
No 204
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.81 E-value=1.1e-08 Score=99.73 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=30.4
Q ss_pred cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
+|+|||||++||++|+.|++. |++|+|+|++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 799999999999999999998 89999999975
No 205
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.80 E-value=7.3e-08 Score=90.76 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=34.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
++||+|||+|.+|+++|+.|+++|.+|+||||... .||.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~-~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK-VGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC-CCce
Confidence 48999999999999999999999999999999753 5554
No 206
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.80 E-value=1.1e-07 Score=90.06 Aligned_cols=38 Identities=32% Similarity=0.658 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+|++||++|+.++++|.+|+||||... .||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~-~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH-FGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC-CCc
Confidence 48999999999999999999999999999999853 454
No 207
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.79 E-value=4.6e-08 Score=92.74 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHHh----HcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLD----KRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~----~~g~~v~~~e~~~ 123 (253)
||+|||+|++||+||+.++ +.|.+|+|+||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 7999999999999999998 6799999999975
No 208
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.78 E-value=7.8e-08 Score=90.97 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=35.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
++||+|||+|.+|+++|+.++++|++|+||||.. ..||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~-~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE-YVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCCcc
Confidence 4899999999999999999999999999999975 356543
No 209
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.78 E-value=1.5e-08 Score=93.01 Aligned_cols=70 Identities=24% Similarity=0.411 Sum_probs=55.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhh
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGW 163 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||||++||++|+.|.++|++|+|||+.+ ..||+..+... ..+..+|.|.+++....+.+.++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~-~~GG~~~s~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 70 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD-VLGGKVAAWKD-EDGDWYETGLHIFFGAYPNMLQLLKEL 70 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCCCcceeEC-CCCCEEEcCcceeccCCchHHHHHHHc
Confidence 58999999999999999999999999999985 58998865421 134567888887776666666666553
No 210
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.77 E-value=1e-07 Score=89.81 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=34.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
++||+|||+| +|+++|+.+++.|.+|+|+||.. ..||..
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~-~~GG~~ 54 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS-YVGGST 54 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC-CCcCcc
Confidence 4899999999 89999999999999999999975 366643
No 211
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.77 E-value=9.4e-08 Score=88.18 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=35.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
.||+|||+|++|+.+|..|+++|.+|+|+|++. .||.+-.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~--~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG--LGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC--CCCcccc
Confidence 489999999999999999999999999999863 6776643
No 212
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.77 E-value=3.2e-08 Score=90.89 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=34.0
Q ss_pred hHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeE--EEEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTSMVSIVRPCWISNLQPFNGMW--HLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~--~v~~~~~~~~~ad~VV~AtG 253 (253)
+.+++...+.+. |++++.++ |+++..+++++ .|..+++.+++||.||-|||
T Consensus 156 fd~~L~~~A~~~-Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 156 FDQFLRRHAEER-GVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHT-T-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred HHHHHHHHHhcC-CCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCC
Confidence 344444444443 79998884 88887776654 46677888999999999998
No 213
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.76 E-value=4.4e-08 Score=88.27 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.||+|||||++|+.+|+.|+++|++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 589999999999999999999999999999865
No 214
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.75 E-value=3.9e-08 Score=88.82 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 123 (253)
.+|+|||||++|+++|..|++.|. +|+|+++..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 589999999999999999999875 899999864
No 215
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.75 E-value=4.6e-08 Score=83.84 Aligned_cols=37 Identities=30% Similarity=0.615 Sum_probs=32.7
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
.|+|||+|++||+++..+...|-.|+++|++. ..||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~-s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAG-SIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccC-CcCCc
Confidence 59999999999999999999988899999985 36653
No 216
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.75 E-value=9.5e-08 Score=85.71 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=70.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
..+|+|||||+.|+.+|..|.+.|.+|+++|+.+. ...+ .
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~-~l~~------------------~--------------------- 180 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS-LLAS------------------L--------------------- 180 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc-ccch------------------h---------------------
Confidence 35899999999999999999999999999998642 1000 0
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
.+. .+...+...+++. +++++++++|.+++.+++.+.+.+.++..+.+|.||
T Consensus 181 ----------------------~~~-----~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI 232 (377)
T PRK04965 181 ----------------------MPP-----EVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVI 232 (377)
T ss_pred ----------------------CCH-----HHHHHHHHHHHhC-CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEE
Confidence 000 0112222222332 699999999999988777787877787899999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|+|
T Consensus 233 ~a~G 236 (377)
T PRK04965 233 AAAG 236 (377)
T ss_pred ECcC
Confidence 9987
No 217
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.75 E-value=4.4e-08 Score=96.47 Aligned_cols=41 Identities=41% Similarity=0.618 Sum_probs=36.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...+|+|||||++|+++|+.|+++|++|+|||+.. ..||.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~-~~GG~l 578 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE-NAGGVV 578 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-ccCcce
Confidence 34799999999999999999999999999999975 366654
No 218
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.74 E-value=7.3e-08 Score=88.68 Aligned_cols=40 Identities=35% Similarity=0.453 Sum_probs=35.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+||+|||||++|+++|..|++.|++|+|+|++ ..||.+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG--PLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC--cccccee
Confidence 389999999999999999999999999999994 3777654
No 219
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.74 E-value=2.3e-07 Score=87.46 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++||+|||+|++|+++|+.++++|.+|+||||... .||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~-~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH-YGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC-CCc
Confidence 48999999999999999999999999999999753 454
No 220
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.73 E-value=2.6e-08 Score=91.74 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=35.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
+||+|||||++|+++|..|++.|++|+|+|+.. .||.+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~--~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP--LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc--ccCCeee
Confidence 599999999999999999999999999999863 7877643
No 221
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.73 E-value=1.2e-07 Score=86.75 Aligned_cols=32 Identities=16% Similarity=0.414 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
+|+|||||++|+.+|..|++. +.+|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 799999999999999999886 68999999975
No 222
>PRK12831 putative oxidoreductase; Provisional
Probab=98.73 E-value=4e-08 Score=90.53 Aligned_cols=41 Identities=39% Similarity=0.649 Sum_probs=35.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...||+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~-~~GG~l 179 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH-EPGGVL 179 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC-CCCCee
Confidence 45799999999999999999999999999999874 366654
No 223
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.72 E-value=2.2e-07 Score=86.11 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~ 122 (253)
++||+|||+|++|..+|+.+++. |.+|+|+|++
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 48999999999999999999997 9999999974
No 224
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=4.7e-08 Score=83.68 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=57.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCcccc-ccccceeccCchhHHHHHHh
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIF-DHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (253)
+|++|||+|++|+.+|..|++.|.+|.|+||+++ +||.+....-+..++.+ ..|+++|..++..+-+.+..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H-IGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~ 73 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH-IGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQ 73 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc-CCCccccccCCCCCeEEeeccCceeecCchHHHHHHhh
Confidence 6999999999999999999999999999999974 99988766555456544 46888888777766555554
No 225
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.71 E-value=2.8e-08 Score=91.83 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=54.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+|+|||||++||++|+.|.++|++|+|+|++. ..||+.++... ..+..+|.|.+++....+.+.+++++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~-~~GG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~~~ 69 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS-FIGGKVGSWVD-GDGNHIEMGLHVFFGCYANLFRLMKK 69 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC-CCCceeeeeec-CCCceEeeceEEecCchHHHHHHHHH
Confidence 58999999999999999999999999999985 58998776422 12567788888877655555555554
No 226
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.70 E-value=1.3e-07 Score=86.44 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=70.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||+.|+.+|..+++.|.+|+|+|+.+. . +...++
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~-i----------------------Lp~~D~---------------- 214 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR-I----------------------LPGEDP---------------- 214 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-C----------------------CCcCCH----------------
Confidence 5799999999999999999999999999999752 0 000000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc--eeecCEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL--RGQFDVV 248 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~--~~~ad~V 248 (253)
.+.+++...+++ .+++++++++|+.++..++++.+..+++. ++++|.|
T Consensus 215 -----------------------------ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~v 264 (454)
T COG1249 215 -----------------------------EISKELTKQLEK-GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAV 264 (454)
T ss_pred -----------------------------HHHHHHHHHHHh-CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEE
Confidence 123333333334 46999999999999988776666655544 7899999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
++|+|
T Consensus 265 LvAiG 269 (454)
T COG1249 265 LVAIG 269 (454)
T ss_pred EEccC
Confidence 99998
No 227
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=2.3e-07 Score=85.38 Aligned_cols=40 Identities=33% Similarity=0.585 Sum_probs=35.3
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
+|+|||||++|+++|..|++.|.+|+|+|++. .||.+-+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~--~GG~c~n~ 41 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD--LGGTCLNE 41 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc--ccccCCCC
Confidence 79999999999999999999999999999873 67766443
No 228
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=4.4e-08 Score=88.30 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=76.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--C-CeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--G-VKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG 167 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g-~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
++|+|||+|++|+.+|.+|.+. . ..|.|+|+... .|.......-.. .........-+....+...+-+.+|....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~-~G~GiaYs~~~p-~~~lNv~a~~mS~~~pD~p~~F~~WL~~~ 79 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN-FGQGIAYSTEEP-EHLLNVPAARMSAFAPDIPQDFVRWLQKQ 79 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc-cCCCccCCCCCc-hhhhccccccccccCCCCchHHHHHHHhc
Confidence 6899999999999999999985 1 23999999854 443222111100 00111111111111111111111121111
Q ss_pred cccccccccc-ceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCc-EEEcCeEEEEEEEe--CCeEEEEeCcccee
Q 047483 168 LVRPWEGVIG-ELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMV-SIVRPCWISNLQPF--NGMWHLSENVKLRG 243 (253)
Q Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv-~i~~~t~V~~i~~~--~~~~~v~~~~~~~~ 243 (253)
.... ... .....+..++ ++.....-+.+.+..|.++.+.. -.+..++++++.+. ..+|.+...++...
T Consensus 80 ~~~~---~d~~~~~~d~~~y~-----pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~ 151 (474)
T COG4529 80 LQRY---RDPEDINHDGQAYP-----PRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSE 151 (474)
T ss_pred cccc---CChhhcCCcccccc-----chhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCee
Confidence 0000 000 0001111111 22222223455566666654422 22346677777776 56777878888889
Q ss_pred ecCEEEEcCC
Q 047483 244 QFDVVVIAHN 253 (253)
Q Consensus 244 ~ad~VV~AtG 253 (253)
.||.+|+|||
T Consensus 152 ~ad~~Vlatg 161 (474)
T COG4529 152 IADIIVLATG 161 (474)
T ss_pred eeeEEEEecc
Confidence 9999999997
No 229
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=86.27 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|||||.+|+.+|..|.+.+++|+|+|+.+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 3689999999999999999987789999999864
No 230
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.70 E-value=6e-08 Score=90.88 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=33.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
.++||+|||||.+||.+|+.++++|.+|+|+||...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 348999999999999999999999999999999753
No 231
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.70 E-value=2e-07 Score=83.66 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=29.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
.+|+|||||++|+.+|..|.+. ..+|+|+++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999885 46899999864
No 232
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.68 E-value=3.1e-07 Score=91.10 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||+|.+||++|+.+++.|.+|+|+||..
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3899999999999999999999999999999975
No 233
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.67 E-value=2.5e-07 Score=83.53 Aligned_cols=95 Identities=24% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
..+|+|||+|..|+.+|..|++.|.+|+|+|+.+. ..++. + .+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~~------------------~---~~--------------- 186 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT-VMGRN------------------A---PP--------------- 186 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc-chhhh------------------c---CH---------------
Confidence 35899999999999999999999999999998642 11000 0 00
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
.....+...+++. ++++++++.|++++. ++.+.+.+.++..+.+|.||
T Consensus 187 ------------------------------~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv 234 (396)
T PRK09754 187 ------------------------------PVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVI 234 (396)
T ss_pred ------------------------------HHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEE
Confidence 0122222222222 699999999999976 55566767777889999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|+|
T Consensus 235 ~a~G 238 (396)
T PRK09754 235 YGIG 238 (396)
T ss_pred ECCC
Confidence 9987
No 234
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.66 E-value=4.9e-08 Score=95.05 Aligned_cols=41 Identities=41% Similarity=0.656 Sum_probs=35.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...||+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~-~~GG~l 470 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH-EIGGVL 470 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC-CCCCee
Confidence 34799999999999999999999999999999864 366653
No 235
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.66 E-value=6e-08 Score=86.74 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=48.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHH
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVD 161 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+||+|||||++|+++|+.|++.|.+|+|+|++. ..||.+.+.... .....+.|.+.+......+.+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~-~iGG~~~~~~~~-g~~~~~~G~h~f~t~~~~v~~~~~ 70 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN-HIGGNCYDEVDE-TILFHQYGPHIFHTNNQYVWDYIS 70 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCCceeeecCC-CceEEeecceeEecCcHHHHHHHH
Confidence 699999999999999999999999999999975 488865543222 112235566666544444444333
No 236
>PRK07846 mycothione reductase; Reviewed
Probab=98.66 E-value=2.2e-07 Score=85.45 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=69.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||+.|+.+|..|++.|.+|+|+|+.+. .. . ..++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-ll--------~--------------~~d~---------------- 207 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR-LL--------R--------------HLDD---------------- 207 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-cc--------c--------------ccCH----------------
Confidence 5899999999999999999999999999998642 10 0 0000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+..+.+. +++++++++|++++.+++++.+...++..+.+|.||+
T Consensus 208 -----------------------------~~~~~l~~l~~~--~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~ 256 (451)
T PRK07846 208 -----------------------------DISERFTELASK--RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLV 256 (451)
T ss_pred -----------------------------HHHHHHHHHHhc--CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEE
Confidence 012222333332 5999999999999877667777666677899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 257 a~G 259 (451)
T PRK07846 257 ATG 259 (451)
T ss_pred EEC
Confidence 987
No 237
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.65 E-value=1e-07 Score=94.13 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=35.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||||++||++|+.|++.|++|+|||+.. ..||..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~-~lGG~l 576 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE-KPGGVV 576 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-ccCcee
Confidence 4799999999999999999999999999999975 367654
No 238
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=2.5e-07 Score=85.20 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=68.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||++|+.+|..|++.|.+|+++|+.+. . .+ ..++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~--------l~--------------~~~~---------------- 213 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR-I--------LP--------------GEDK---------------- 213 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-c--------CC--------------cCCH----------------
Confidence 5899999999999999999999999999998642 1 00 0000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecCE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad~ 247 (253)
.+...+...+++. +++++++++|++|+.+++.+.+...++ ..+.+|.
T Consensus 214 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~ 263 (462)
T PRK06416 214 -----------------------------EISKLAERALKKR-GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADY 263 (462)
T ss_pred -----------------------------HHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCE
Confidence 0122222222222 699999999999988777777665444 5799999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 264 vi~a~G 269 (462)
T PRK06416 264 VLVAVG 269 (462)
T ss_pred EEEeeC
Confidence 999987
No 239
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.64 E-value=1.2e-07 Score=87.58 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=34.4
Q ss_pred CcEEEECcCHHHHHHHHHHhH--cCCeEEEEcCCCCCCCCCc
Q 047483 91 PHVGIIGGGMAGLACALSLDK--RGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~--~g~~v~~~e~~~~~~gg~~ 130 (253)
.+|+|||||++|+.+|+.|++ .|++|+|||+.+ .+||.+
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p-~pgGlv 67 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP-TPFGLV 67 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC-CCcceE
Confidence 689999999999999999987 699999999986 466644
No 240
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.64 E-value=3.9e-07 Score=78.66 Aligned_cols=39 Identities=33% Similarity=0.630 Sum_probs=34.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC-CCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH-GLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~-~~gg 128 (253)
..||+|||+|++||.+|.+|+++|.+|+|+|+... ..||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 47999999999999999999999999999998533 3454
No 241
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.63 E-value=1.2e-07 Score=85.59 Aligned_cols=32 Identities=47% Similarity=0.657 Sum_probs=30.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
||+|||+|++||++|+.|.+. ++|+|+-|+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999998 99999999753
No 242
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.62 E-value=3.6e-07 Score=84.10 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=69.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|..|+.+|..|++.|.+|+|+|+.+. ... .+ ++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~-------------------~~---d~~--------------- 217 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR-LLS-------------------FL---DDE--------------- 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-cCC-------------------cC---CHH---------------
Confidence 6899999999999999999999999999998642 100 00 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
. ...+.+.+.+. +++++++++|++++.+++++.++..++..+.+|.||+
T Consensus 218 ---------------------~--------~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~ 266 (461)
T PRK05249 218 ---------------------I--------SDALSYHLRDS--GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLY 266 (461)
T ss_pred ---------------------H--------HHHHHHHHHHc--CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEE
Confidence 0 01222333222 6999999999999877777777766667899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 267 a~G 269 (461)
T PRK05249 267 ANG 269 (461)
T ss_pred eec
Confidence 987
No 243
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.62 E-value=1.5e-07 Score=80.54 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
.+|++|||||+.||+.|.+|.-+ +.+|.|+|+..
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~ 83 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK 83 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence 48999999999999999999877 89999999964
No 244
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.62 E-value=5.1e-07 Score=84.01 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
+||+|||||++|+.+|..|+++|.+|+|+|+.
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 89999999999999999999999999999973
No 245
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.62 E-value=3.1e-07 Score=84.47 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=68.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||.+|+.+|..|.+.|.+|+++|+.+. .. + .+ +.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l--------~-----------~~---~~---------------- 211 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR-IL--------P-----------GE---DA---------------- 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC-CC--------C-----------CC---CH----------------
Confidence 5899999999999999999999999999998742 10 0 00 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc--ceeecCE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK--LRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~--~~~~ad~ 247 (253)
.+.. +.+.+.+. +++++++++|++|+.+++.+.+...++ ..+.+|.
T Consensus 212 -----------------------------~~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~ 260 (461)
T TIGR01350 212 -----------------------------EVSKVVAKALKKK--GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEK 260 (461)
T ss_pred -----------------------------HHHHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCE
Confidence 0111 22223322 699999999999988777777765444 4799999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 261 vi~a~G 266 (461)
T TIGR01350 261 VLVAVG 266 (461)
T ss_pred EEEecC
Confidence 999997
No 246
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.61 E-value=1.2e-07 Score=86.59 Aligned_cols=44 Identities=30% Similarity=0.483 Sum_probs=38.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
..+|++|||+|++|..+|..+++.|.+|.|+|+.. ..||.+-..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~-~lGGtCln~ 46 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE-RLGGTCLNV 46 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC-CcCceEEee
Confidence 45999999999999999999999999999999974 478876543
No 247
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.61 E-value=2.2e-07 Score=84.14 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.||+|||||++|+.+|+.|+++|++|+|||+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 379999999999999999999999999999865
No 248
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.61 E-value=1.4e-07 Score=84.09 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=28.2
Q ss_pred cEEEECcCHHHHHHHHHHhHc---CCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKR---GVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~---g~~v~~~e~~~ 123 (253)
+|+|||||++|+.+|..|.++ +.+|+|+|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999643 68999999874
No 249
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.61 E-value=9.7e-08 Score=95.28 Aligned_cols=40 Identities=43% Similarity=0.552 Sum_probs=35.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||||++||++|+.|+++|++|+|||+.. ..||.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~-~~GG~l 469 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH-VVGGVL 469 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCccee
Confidence 4799999999999999999999999999999875 466643
No 250
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.60 E-value=9.9e-08 Score=87.61 Aligned_cols=41 Identities=44% Similarity=0.683 Sum_probs=35.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...+|+|||||++||++|+.|++.|++|+|||+.. ..||.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~-~~GG~l 172 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH-KPGGVV 172 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC-CCCcEe
Confidence 34799999999999999999999999999999974 356543
No 251
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.60 E-value=2.8e-07 Score=80.75 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..||+|||||.+|.++|+.|++.|.+|.|+||+-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 3799999999999999999999999999999963
No 252
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.3e-07 Score=86.28 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCch----hHHHHHHhhhh
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS----RFHELVDGWLE 165 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 165 (253)
.+||+|||||-+|+.+|++.++.|.++.++--+.+.+|-..=+..+.+. +...+...-+ .+....+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~------~KG~lvrEIDALGG~Mg~~~D~--- 74 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGP------GKGHLVREIDALGGLMGKAADK--- 74 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCc------ccceeEEeehhccchHHHhhhh---
Confidence 4899999999999999999999999999998765433321100001000 0001111111 11111111
Q ss_pred cccccc-ccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe--EEEEeCccce
Q 047483 166 RGLVRP-WEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM--WHLSENVKLR 242 (253)
Q Consensus 166 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~--~~v~~~~~~~ 242 (253)
.++--+ +....++ .+.....+.... ..+..++..++..+++.|+.+ .|+++..+++. +-|.+.+|..
T Consensus 75 ~~IQ~r~LN~sKGP-----AVra~RaQaDk~----~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~ 144 (621)
T COG0445 75 AGIQFRMLNSSKGP-----AVRAPRAQADKW----LYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPE 144 (621)
T ss_pred cCCchhhccCCCcc-----hhcchhhhhhHH----HHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCe
Confidence 000000 0000000 000000111111 124555666666667888744 67788765543 4466788889
Q ss_pred eecCEEEEcCC
Q 047483 243 GQFDVVVIAHN 253 (253)
Q Consensus 243 ~~ad~VV~AtG 253 (253)
+.|+.||++||
T Consensus 145 ~~a~aVVlTTG 155 (621)
T COG0445 145 FHAKAVVLTTG 155 (621)
T ss_pred eecCEEEEeec
Confidence 99999999998
No 253
>PRK06116 glutathione reductase; Validated
Probab=98.60 E-value=5.9e-07 Score=82.49 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=68.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|.+|+.+|..|.+.|.+|+++++++. . .. .+ ++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~--------l~-----------~~---~~~--------------- 209 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA-P--------LR-----------GF---DPD--------------- 209 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-C--------cc-----------cc---CHH---------------
Confidence 5899999999999999999999999999998642 1 00 00 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVV 249 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV 249 (253)
. ...+.+.|.+. |++++++++|.+++.++++ +.+.++++..+.+|.||
T Consensus 210 ---------------------~--------~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv 258 (450)
T PRK06116 210 ---------------------I--------RETLVEEMEKK--GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLI 258 (450)
T ss_pred ---------------------H--------HHHHHHHHHHC--CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEE
Confidence 0 02222333222 6999999999999876554 66776677789999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|+|
T Consensus 259 ~a~G 262 (450)
T PRK06116 259 WAIG 262 (450)
T ss_pred EeeC
Confidence 9987
No 254
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.59 E-value=1.9e-07 Score=83.05 Aligned_cols=38 Identities=42% Similarity=0.485 Sum_probs=33.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
.+|+|||+|++|+.+|..|++.|++|+|+|+.+ ..||.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~~gg~ 56 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP-EPGGL 56 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-CCCce
Confidence 689999999999999999999999999999975 35553
No 255
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.59 E-value=1.7e-07 Score=86.17 Aligned_cols=39 Identities=36% Similarity=0.656 Sum_probs=34.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
..+|+|||||++|+++|+.|+++|++|+|+|+.. ..||.
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~-~~gG~ 178 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD-KAGGL 178 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-CCCcE
Confidence 4799999999999999999999999999999975 35553
No 256
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.58 E-value=7.2e-07 Score=82.69 Aligned_cols=32 Identities=34% Similarity=0.450 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
+||+|||+|++|+.+|+.+++.|.+|+|+|+.
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 89999999999999999999999999999974
No 257
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.58 E-value=5.7e-07 Score=82.32 Aligned_cols=93 Identities=23% Similarity=0.322 Sum_probs=67.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||++|+.+|..|++.|.+|+|+|+.+. ...+ .++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~~~---------------- 198 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST-ILPR----------------------EEP---------------- 198 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc-cCCC----------------------CCH----------------
Confidence 5799999999999999999999999999998642 1000 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+...+++. |++++++++|++|+.+++.+.+.. ++..+.+|.||+
T Consensus 199 -----------------------------~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viv 247 (438)
T PRK07251 199 -----------------------------SVAALAKQYMEED-GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLY 247 (438)
T ss_pred -----------------------------HHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEE
Confidence 0122222222222 699999999999987666666654 456899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 248 a~G 250 (438)
T PRK07251 248 ATG 250 (438)
T ss_pred eeC
Confidence 987
No 258
>PLN02487 zeta-carotene desaturase
Probab=98.56 E-value=1.4e-07 Score=88.59 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=52.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
.+|+|||||++||++|+.|.++|++|+|+|+.. ..||++++.... .+..+|.|.+++....+.+..++++
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~-~~gG~~~s~~~~-~g~~~e~G~h~~~~~~~~~~~ll~~ 145 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP-FIGGKVGSFVDK-NGNHIEMGLHVFFGCYNNLFRLMKK 145 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC-CCCCceeeeeec-CCcEEecceeEecCCcHHHHHHHHh
Confidence 589999999999999999999999999999986 488877654321 2456677777765444444444444
No 259
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.56 E-value=1.1e-06 Score=79.41 Aligned_cols=33 Identities=48% Similarity=0.835 Sum_probs=31.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+|||+|++|+++|+.|.++|++|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 489999999999999999999999999999964
No 260
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.55 E-value=1.3e-06 Score=78.27 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=48.4
Q ss_pred CccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCEEEEcCC
Q 047483 193 PKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 193 ~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~VV~AtG 253 (253)
.++++...+..+++.+.+... |++|+|+++|.+|+..++. ..+.++++..+.+|+||+|.|
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 456666677777777766554 6999999999999988764 445577778999999999987
No 261
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.55 E-value=8.3e-08 Score=91.58 Aligned_cols=44 Identities=34% Similarity=0.598 Sum_probs=37.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
++||+|||+|++|..+|..+++.|.+|+|+|++....||.+-..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence 48999999999999999999999999999997533478876543
No 262
>PLN02507 glutathione reductase
Probab=98.55 E-value=7.6e-07 Score=82.86 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=69.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|..|+.+|..|++.|.+|+|+++.+. . .. .+ ++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~-~--------l~-----------~~---d~---------------- 244 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL-P--------LR-----------GF---DD---------------- 244 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC-c--------Cc-----------cc---CH----------------
Confidence 5899999999999999999999999999998642 0 00 00 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+...+++. |+++++++.|++++.+++++.+...++..+.+|.||+
T Consensus 245 -----------------------------~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~ 294 (499)
T PLN02507 245 -----------------------------EMRAVVARNLEGR-GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLF 294 (499)
T ss_pred -----------------------------HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEE
Confidence 0122222222222 6999999999999877777777766667899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 295 a~G 297 (499)
T PLN02507 295 ATG 297 (499)
T ss_pred eec
Confidence 987
No 263
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.55 E-value=3.9e-07 Score=89.46 Aligned_cols=38 Identities=5% Similarity=0.042 Sum_probs=31.1
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++.++.|++|..+.. .|.+.++..+.+|+||+|||
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATG 110 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATG 110 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCC
Confidence 699999999999987543 34456667899999999998
No 264
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.54 E-value=1.6e-07 Score=83.18 Aligned_cols=71 Identities=24% Similarity=0.435 Sum_probs=57.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCCCCCCCCccccccCCCccccccccceeccCch---hHHHHHHhh
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDS---RFHELVDGW 163 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 163 (253)
.+|+|||||++||++||+|++++. .|+|+|+.+ ..||.+.+ ....+++.|+.|++.+....+ ...++++++
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~-RvGGwirS-~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP-RVGGWIRS-DRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC-cccceeee-ccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 689999999999999999999975 456699986 59998877 344568899999998886665 455666654
No 265
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.54 E-value=7.7e-07 Score=82.15 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=69.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||+|..|+.+|..|++.|.+|+++|+.+. .... .++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~d~---------------- 218 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-VLPG----------------------EDA---------------- 218 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-CCCC----------------------CCH----------------
Confidence 5799999999999999999999999999998642 1000 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+...+++. |++++++++|++++.+++++.+...++..+.+|.||+
T Consensus 219 -----------------------------~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~ 268 (466)
T PRK07845 219 -----------------------------DAAEVLEEVFARR-GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALM 268 (466)
T ss_pred -----------------------------HHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEE
Confidence 0122222222322 6999999999999877777777666777899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 269 a~G 271 (466)
T PRK07845 269 AVG 271 (466)
T ss_pred eec
Confidence 987
No 266
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.54 E-value=7.9e-07 Score=81.61 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=68.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||+|.+|+.+|..|++.|.+|+|+|+... . .. .+ ++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~--------l~-----------~~---d~---------------- 207 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL-I--------LR-----------GF---DD---------------- 207 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC-C--------Cc-----------cc---CH----------------
Confidence 5799999999999999999999999999998642 1 00 00 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+...+++. +++++++++|++++..++++.+...++..+.+|.||+
T Consensus 208 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viv 257 (446)
T TIGR01424 208 -----------------------------DMRALLARNMEGR-GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLF 257 (446)
T ss_pred -----------------------------HHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEE
Confidence 0112222222222 6999999999999877666777666667899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 258 a~G 260 (446)
T TIGR01424 258 ATG 260 (446)
T ss_pred eeC
Confidence 987
No 267
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.54 E-value=7.4e-07 Score=81.90 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=66.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+. +... .++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-il~~----------------------~d~---------------- 207 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER-VLRS----------------------FDS---------------- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-CCcc----------------------cCH----------------
Confidence 5899999999999999999999999999998642 1000 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCcc-ceeecCE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVK-LRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~-~~~~ad~ 247 (253)
.+.. +.+.|.+. |+++++++.|++++.++++ ..+..+++ ..+.+|.
T Consensus 208 -----------------------------~~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~ 256 (450)
T TIGR01421 208 -----------------------------MISETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDE 256 (450)
T ss_pred -----------------------------HHHHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCE
Confidence 0122 22233322 6999999999999876443 55655555 5699999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 257 vi~a~G 262 (450)
T TIGR01421 257 LIWAIG 262 (450)
T ss_pred EEEeeC
Confidence 999987
No 268
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.54 E-value=8e-07 Score=81.72 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=68.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||+.|+.+|..|.+.|.+|+++|+.+. ... .+ ++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~-ll~-------------------~~---d~---------------- 210 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK-LLR-------------------HL---DE---------------- 210 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc-ccc-------------------cc---CH----------------
Confidence 5899999999999999999999999999998642 100 00 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+..+.+. ++++++++.|++++.+++.+.+...++..+.+|.||+
T Consensus 211 -----------------------------~~~~~l~~~~~~--gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~ 259 (452)
T TIGR03452 211 -----------------------------DISDRFTEIAKK--KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLV 259 (452)
T ss_pred -----------------------------HHHHHHHHHHhc--CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEE
Confidence 011222223322 5999999999999877767777666667899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 260 a~G 262 (452)
T TIGR03452 260 ATG 262 (452)
T ss_pred eec
Confidence 987
No 269
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.52 E-value=1.2e-06 Score=80.76 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=66.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|..|+.+|..|++.|.+|+|+|+.+. . .+ ..++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-~--------l~--------------~~d~---------------- 213 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-A--------LP--------------NEDA---------------- 213 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC-c--------CC--------------ccCH----------------
Confidence 5899999999999999999999999999997642 0 00 0000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC--cc--ceeec
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN--VK--LRGQF 245 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~--~~--~~~~a 245 (253)
.+ ..+.+.|.+. |++|+++++|++++.+++.+.+... ++ ..+.+
T Consensus 214 -----------------------------~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~ 262 (466)
T PRK07818 214 -----------------------------EVSKEIAKQYKKL--GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEA 262 (466)
T ss_pred -----------------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEe
Confidence 01 1222233332 6999999999999876666555432 33 36999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
|.||+|+|
T Consensus 263 D~vi~a~G 270 (466)
T PRK07818 263 DKVLQAIG 270 (466)
T ss_pred CEEEECcC
Confidence 99999987
No 270
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.52 E-value=1e-06 Score=81.17 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=66.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||++|+.+|..|.+.|.+|+|+|+.+. . .+ ..++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-l--------l~--------------~~d~---------------- 211 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ-L--------LP--------------GEDE---------------- 211 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-c--------Cc--------------cccH----------------
Confidence 5899999999999999999999999999998642 1 00 0000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc-ceeecCEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK-LRGQFDVV 248 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~-~~~~ad~V 248 (253)
.+.. +.+.|.+ . |++++++++|++++.++..+.+..+++ ..+.+|.|
T Consensus 212 -----------------------------e~~~~l~~~L~~-~-GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~v 260 (458)
T PRK06912 212 -----------------------------DIAHILREKLEN-D-GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFV 260 (458)
T ss_pred -----------------------------HHHHHHHHHHHH-C-CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEE
Confidence 0112 2222332 2 699999999999987666665543322 36899999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|+|+|
T Consensus 261 ivA~G 265 (458)
T PRK06912 261 LVSVG 265 (458)
T ss_pred EEecC
Confidence 99998
No 271
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.51 E-value=8.2e-07 Score=81.82 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=66.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|.+|+.+|..|.+.|.+|+|+|+.+. .. + ..++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l--------~--------------~~d~---------------- 207 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-LL--------P--------------REEP---------------- 207 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-CC--------C--------------ccCH----------------
Confidence 5899999999999999999999999999998642 10 0 0000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC---ccceeecCE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN---VKLRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~---~~~~~~ad~ 247 (253)
.+...+...+++. +++++++++|++++.+++.+.+... ++.++.+|.
T Consensus 208 -----------------------------~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ 257 (463)
T TIGR02053 208 -----------------------------EISAAVEEALAEE-GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADE 257 (463)
T ss_pred -----------------------------HHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCE
Confidence 0122222222322 6999999999999877665555432 235799999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 258 ViiA~G 263 (463)
T TIGR02053 258 LLVATG 263 (463)
T ss_pred EEEeEC
Confidence 999987
No 272
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.51 E-value=9.9e-07 Score=79.17 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhhcC-CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 200 GMRPLADSLLAQTS-MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 200 ~~~~l~~~l~~~~~-gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
....++..|.+.+. |++++++++|++|+.+++.|.+.+.++..++||.||+|+|
T Consensus 133 dp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G 187 (381)
T TIGR03197 133 SPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANG 187 (381)
T ss_pred ChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCC
Confidence 35677777776544 7999999999999988888988877766699999999998
No 273
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9.1e-07 Score=72.39 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=71.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC---CCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN---HGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG 167 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
..|+|||+|+++-.+|++++++.++-++||-.. ...||.+.+..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT--------------------------------- 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT--------------------------------- 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee---------------------------------
Confidence 589999999999999999999999999999642 12333332110
Q ss_pred ccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeec
Q 047483 168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQF 245 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~a 245 (253)
.+..+|+......+ ..+.+.+.++.. |.+|... .|.++.....-+++.+ +.+.+.|
T Consensus 56 ----------------~veNfPGFPdgi~G----~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~ 113 (322)
T KOG0404|consen 56 ----------------DVENFPGFPDGITG----PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTA 113 (322)
T ss_pred ----------------ccccCCCCCccccc----HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceee
Confidence 11222222211111 344444444433 5677654 6888888888888865 5578999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
|.||+|||
T Consensus 114 ~avI~atG 121 (322)
T KOG0404|consen 114 DAVILATG 121 (322)
T ss_pred eeEEEecc
Confidence 99999998
No 274
>PRK07846 mycothione reductase; Reviewed
Probab=98.50 E-value=4.3e-07 Score=83.48 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=32.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
+|++|||+|++|..+|..+ .|.+|+|+|+. ..||.+-..
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~--~~GGtC~n~ 40 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG--TFGGTCLNV 40 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC--CCCCcccCc
Confidence 7999999999999998763 59999999986 378876443
No 275
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.49 E-value=2.9e-07 Score=84.65 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=32.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
+|++|||+|++|..+|.. ..|.+|+|+|++. .||.+-..
T Consensus 3 yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~--~GGtC~n~ 41 (452)
T TIGR03452 3 YDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT--FGGTCLNV 41 (452)
T ss_pred cCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC--CCCeeecc
Confidence 899999999999998654 4699999999863 78876443
No 276
>PRK06370 mercuric reductase; Validated
Probab=98.49 E-value=1.4e-06 Score=80.32 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=66.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|..|+.+|..|++.|.+|+|+|+.+. .... .++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~l~~----------------------~~~---------------- 212 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR-LLPR----------------------EDE---------------- 212 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-CCcc----------------------cCH----------------
Confidence 5899999999999999999999999999998642 1000 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEE--e-CccceeecCE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLS--E-NVKLRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~--~-~~~~~~~ad~ 247 (253)
.+...+...+++ .|++++++++|.+++..++...+. . +++..+.+|.
T Consensus 213 -----------------------------~~~~~l~~~l~~-~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ 262 (463)
T PRK06370 213 -----------------------------DVAAAVREILER-EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSH 262 (463)
T ss_pred -----------------------------HHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCE
Confidence 011222222222 269999999999998776655443 2 2345799999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 263 Vi~A~G 268 (463)
T PRK06370 263 ILVAVG 268 (463)
T ss_pred EEECcC
Confidence 999987
No 277
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.48 E-value=3.2e-07 Score=84.78 Aligned_cols=41 Identities=39% Similarity=0.681 Sum_probs=35.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...+|+|||||++|+++|+.|++.|++|+|||+.. ..||.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~-~~GG~l 182 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD-RIGGLL 182 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC-CCCcee
Confidence 34799999999999999999999999999999975 366543
No 278
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.47 E-value=4.4e-07 Score=88.76 Aligned_cols=38 Identities=5% Similarity=0.085 Sum_probs=31.6
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++++++|++|+.+.. .|.+.++..+.+|.||+|||
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATG 105 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATG 105 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCC
Confidence 699999999999987653 45556667899999999998
No 279
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.46 E-value=5.5e-07 Score=83.15 Aligned_cols=41 Identities=44% Similarity=0.749 Sum_probs=35.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+ ..||.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~-~~gG~l 180 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP-EIGGLL 180 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCCcee
Confidence 34789999999999999999999999999999975 366644
No 280
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.45 E-value=1.9e-06 Score=79.52 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=65.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|+.|+.+|..|.+.|.+|+|+|+.+. .. + . + ++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~-il--------~--~---------~---d~---------------- 215 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR-IC--------P--G---------T---DT---------------- 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC-CC--------C--C---------C---CH----------------
Confidence 5899999999999999999999999999998642 10 0 0 0 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeC-----ccceee
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSEN-----VKLRGQ 244 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~-----~~~~~~ 244 (253)
.+. .+.+.|.+. ++++++++.|++++.+++++.+... ++..+.
T Consensus 216 -----------------------------~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~ 264 (466)
T PRK06115 216 -----------------------------ETAKTLQKALTKQ--GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQ 264 (466)
T ss_pred -----------------------------HHHHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEE
Confidence 011 222223222 6999999999999876666654421 235799
Q ss_pred cCEEEEcCC
Q 047483 245 FDVVVIAHN 253 (253)
Q Consensus 245 ad~VV~AtG 253 (253)
+|.||+|+|
T Consensus 265 ~D~vi~a~G 273 (466)
T PRK06115 265 ADYVLVAIG 273 (466)
T ss_pred eCEEEEccC
Confidence 999999987
No 281
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=1.6e-06 Score=80.19 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=31.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 589999999999999999999999999999864
No 282
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.45 E-value=2.5e-06 Score=78.20 Aligned_cols=92 Identities=23% Similarity=0.354 Sum_probs=66.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|+.|+.+|..|.+.|.+|+|+|++.. .... .++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~~~---------------- 199 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL-FLPR----------------------EDR---------------- 199 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-CCCC----------------------cCH----------------
Confidence 4899999999999999999999999999998642 1000 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
.+ ..+.+.|.+. |+++++++.|++++.+++.+.+..++ +.+.+|.||
T Consensus 200 -----------------------------~~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~v~v~~~~-g~i~~D~vl 247 (441)
T PRK08010 200 -----------------------------DIADNIATILRDQ--GVDIILNAHVERISHHENQVQVHSEH-AQLAVDALL 247 (441)
T ss_pred -----------------------------HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEcC-CeEEeCEEE
Confidence 01 1222223322 69999999999998877667665544 468999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|+|
T Consensus 248 ~a~G 251 (441)
T PRK08010 248 IASG 251 (441)
T ss_pred Eeec
Confidence 9987
No 283
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=2.6e-06 Score=78.80 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|..|+.+|..|.+.|.+|+|+|+.+. .... .++.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~----------------------~d~~~-------------- 226 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA-FLAA----------------------ADEQV-------------- 226 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc-cCCc----------------------CCHHH--------------
Confidence 5899999999999999999999999999998642 1000 00000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc--c--ceeecC
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV--K--LRGQFD 246 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~--~--~~~~ad 246 (253)
...+.+.|.+ .|++++++++|++|+.+++.+.+...+ + ..+.+|
T Consensus 227 ------------------------------~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D 274 (475)
T PRK06327 227 ------------------------------AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVD 274 (475)
T ss_pred ------------------------------HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcC
Confidence 0122222332 269999999999998776666655332 2 469999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||+|+|
T Consensus 275 ~vl~a~G 281 (475)
T PRK06327 275 KLIVSIG 281 (475)
T ss_pred EEEEccC
Confidence 9999987
No 284
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.44 E-value=5.2e-07 Score=86.55 Aligned_cols=40 Identities=43% Similarity=0.669 Sum_probs=35.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||||++||++|+.|++.|++|+|||+.. ..||.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~-~~GG~l 232 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE-QAGGMM 232 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCcee
Confidence 4689999999999999999999999999999975 367654
No 285
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.42 E-value=3.3e-06 Score=74.13 Aligned_cols=42 Identities=31% Similarity=0.513 Sum_probs=37.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGT 132 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~ 132 (253)
++||+|||+|+.|-.+|+..++.|++.+++|++. ..||.+-.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~-~LGGTcLn 80 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG-TLGGTCLN 80 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccC-ccCceeee
Confidence 4899999999999999999999999999999975 48886543
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.40 E-value=2e-06 Score=84.15 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=68.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||++|+.+|..|++.|.+|+|+|+.+. .-. .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~-ll~----~------------------------------------- 178 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG-LMA----K------------------------------------- 178 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc-hhh----h-------------------------------------
Confidence 5799999999999999999999999999998642 000 0
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
... ......+...+++. |+++++++.|++|..++....+.++++..+.+|.||+
T Consensus 179 --------------------~ld-----~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~ 232 (785)
T TIGR02374 179 --------------------QLD-----QTAGRLLQRELEQK-GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVM 232 (785)
T ss_pred --------------------hcC-----HHHHHHHHHHHHHc-CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEE
Confidence 000 00122222222332 6999999999999765544556677778999999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 233 a~G 235 (785)
T TIGR02374 233 AAG 235 (785)
T ss_pred CCC
Confidence 987
No 287
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.40 E-value=1.3e-06 Score=78.06 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=45.7
Q ss_pred eCCeeeeCCCCCCccccCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeC-ccceeecCEEEEcCC
Q 047483 181 VGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSEN-VKLRGQFDVVVIAHN 253 (253)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~-~~~~~~ad~VV~AtG 253 (253)
..+.++|..... .++++.|...+. ||+|+++++|++| ++++|.+.+. ++..++||.||+|||
T Consensus 74 ~~grvfP~S~~A---------~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 74 SSGRVFPVEMKA---------APLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCCEECCCCCCH---------HHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence 456777766665 666666665443 7999999999999 3445777654 335699999999998
No 288
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.38 E-value=3.1e-06 Score=78.83 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=66.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||..|+.+|..|++.|.+|+|+++... . .. + ++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l-~~-----~-----------------d~---------------- 222 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-L-RG-----F-----------------DR---------------- 222 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-c-cc-----C-----------------CH----------------
Confidence 4799999999999999999999999999986310 0 00 0 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
.+. .+.+.|.+. ++++++++.|.+++..++...+...++..+.+|.||
T Consensus 223 -----------------------------~~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl 271 (499)
T PTZ00052 223 -----------------------------QCSEKVVEYMKEQ--GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVL 271 (499)
T ss_pred -----------------------------HHHHHHHHHHHHc--CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence 011 222223222 699999999999987666666666666789999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|.|
T Consensus 272 ~a~G 275 (499)
T PTZ00052 272 YATG 275 (499)
T ss_pred EeeC
Confidence 9987
No 289
>PRK14727 putative mercuric reductase; Provisional
Probab=98.37 E-value=3.4e-06 Score=78.17 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=66.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||+|..|+.+|..|.+.|.+|+|+++... . .. + ++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-l---------~~----~----------d~~--------------- 229 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL-L---------FR----E----------DPL--------------- 229 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC-C---------Cc----c----------hHH---------------
Confidence 5799999999999999999999999999986421 0 00 0 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
. ...+.+.|.+. |++++++++|++++.+++.+.+...+ +.+.+|.||+
T Consensus 230 ---------------------~--------~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~Vlv 277 (479)
T PRK14727 230 ---------------------L--------GETLTACFEKE--GIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLI 277 (479)
T ss_pred ---------------------H--------HHHHHHHHHhC--CCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEE
Confidence 0 01222223222 69999999999998777777776544 5799999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 278 A~G 280 (479)
T PRK14727 278 STG 280 (479)
T ss_pred ccC
Confidence 987
No 290
>PRK13748 putative mercuric reductase; Provisional
Probab=98.37 E-value=3.6e-06 Score=79.46 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=66.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||+|..|+.+|..|.+.|.+|+|+++... +. ..++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~----------l~--------------~~d~~--------------- 311 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL----------FF--------------REDPA--------------- 311 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc----------cc--------------ccCHH---------------
Confidence 5899999999999999999999999999997421 00 00000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChH-HHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMR-PLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVV 249 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV 249 (253)
+. .+.+.|.+. |+++++++.|++++.+++.+.+..++ +.+.+|.||
T Consensus 312 ------------------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi 358 (561)
T PRK13748 312 ------------------------------IGEAVTAAFRAE--GIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLL 358 (561)
T ss_pred ------------------------------HHHHHHHHHHHC--CCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEE
Confidence 11 222223222 69999999999998777766665544 479999999
Q ss_pred EcCC
Q 047483 250 IAHN 253 (253)
Q Consensus 250 ~AtG 253 (253)
+|+|
T Consensus 359 ~a~G 362 (561)
T PRK13748 359 VATG 362 (561)
T ss_pred EccC
Confidence 9987
No 291
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.37 E-value=8.7e-07 Score=84.86 Aligned_cols=40 Identities=43% Similarity=0.747 Sum_probs=35.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||+|++||++|+.|++.|++|+|||+.. ..||.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~-~~GG~l 349 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP-EIGGML 349 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC-CCCCee
Confidence 4789999999999999999999999999999985 366654
No 292
>PRK14694 putative mercuric reductase; Provisional
Probab=98.36 E-value=4.3e-06 Score=77.20 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=65.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||+|++|+.+|..|++.|.+|+++++... . .. .++
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~-l---------~~--------------~~~---------------- 218 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV-L---------SQ--------------EDP---------------- 218 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC-C---------CC--------------CCH----------------
Confidence 5899999999999999999999999999986421 0 00 000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+...+++. |+++++++.|.+++.+++.+.+.+++ +.+.+|.||+
T Consensus 219 -----------------------------~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~ 267 (468)
T PRK14694 219 -----------------------------AVGEAIEAAFRRE-GIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLV 267 (468)
T ss_pred -----------------------------HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEE
Confidence 0111222222222 69999999999998777666665544 5799999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 268 a~G 270 (468)
T PRK14694 268 ATG 270 (468)
T ss_pred ccC
Confidence 987
No 293
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=3.2e-06 Score=78.12 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=65.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||+.|+.+|..|.+.|.+|+|+|+.+. . .+ ..++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-i--------l~--------------~~d~---------------- 215 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-V--------IP--------------AADK---------------- 215 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-C--------CC--------------cCCH----------------
Confidence 5899999999999999999999999999998642 1 00 0000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCc----cceeec
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENV----KLRGQF 245 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~----~~~~~a 245 (253)
.+.. +.+.|.++ +++++++.|++++..++.+.+...+ ...+.+
T Consensus 216 -----------------------------~~~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~ 263 (471)
T PRK06467 216 -----------------------------DIVKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRY 263 (471)
T ss_pred -----------------------------HHHHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEe
Confidence 0112 22222222 7899999999998776666665332 236999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
|.||+|+|
T Consensus 264 D~vi~a~G 271 (471)
T PRK06467 264 DAVLVAVG 271 (471)
T ss_pred CEEEEeec
Confidence 99999987
No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.35 E-value=2.3e-06 Score=76.80 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 123 (253)
.+|||||||.+|+.+|..|.++- .+|+++|++.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 68999999999999999999974 9999999975
No 295
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.34 E-value=4.5e-06 Score=77.43 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=64.8
Q ss_pred CcEEEECcCHHHHHHHHHHhH---cCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcc
Q 047483 91 PHVGIIGGGMAGLACALSLDK---RGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERG 167 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
.+++|||||+.|+.+|..+.. .|.+|+|+|+.+. +... .++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~-il~~----------------------~d~------------- 231 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM-ILRG----------------------FDS------------- 231 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc-cccc----------------------cCH-------------
Confidence 589999999999999976654 4999999998642 1000 000
Q ss_pred ccccccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeec
Q 047483 168 LVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQF 245 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~a 245 (253)
.+ ..+.+.|.+. |+++++++.|++++.++++ ..+..+++..+.+
T Consensus 232 --------------------------------~~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~ 277 (486)
T TIGR01423 232 --------------------------------TLRKELTKQLRAN--GINIMTNENPAKVTLNADGSKHVTFESGKTLDV 277 (486)
T ss_pred --------------------------------HHHHHHHHHHHHc--CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEc
Confidence 01 2233333332 6999999999999875443 4555556678999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
|.||+|+|
T Consensus 278 D~vl~a~G 285 (486)
T TIGR01423 278 DVVMMAIG 285 (486)
T ss_pred CEEEEeeC
Confidence 99999987
No 296
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.34 E-value=1.7e-06 Score=80.25 Aligned_cols=40 Identities=38% Similarity=0.634 Sum_probs=34.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||+|++|+++|..|++.|++|+|||+.. ..||.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~-~~gG~l 182 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED-RCGGLL 182 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CCCcee
Confidence 3699999999999999999999999999999875 356543
No 297
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.34 E-value=4.8e-06 Score=76.23 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=64.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||++|+.+|..|.+.|.+|+++++... . .. ..+ +
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~--------l~----------~~~---~----------------- 190 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR-I--------LP----------DSF---D----------------- 190 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc-c--------Cc----------hhc---C-----------------
Confidence 5899999999999999999999999999997642 0 00 000 0
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
+.+...+...+++. |++++++++|++++.++..+.+.. +++.+.+|.||+
T Consensus 191 ----------------------------~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~ 240 (444)
T PRK09564 191 ----------------------------KEITDVMEEELREN-GVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIV 240 (444)
T ss_pred ----------------------------HHHHHHHHHHHHHC-CCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEE
Confidence 00122222222332 699999999999975444444444 345899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 241 a~G 243 (444)
T PRK09564 241 ATG 243 (444)
T ss_pred CcC
Confidence 987
No 298
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.33 E-value=3.8e-06 Score=75.82 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=43.2
Q ss_pred HHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHh
Q 047483 104 ACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDG 162 (253)
Q Consensus 104 ~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+||+.|+++|++|+|||++. .+||+..+...+..+..+|.|.+++....+.+.+++++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~-~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~ 58 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARP-RLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRR 58 (419)
T ss_pred ChHHHHHhCCCceEEEecCC-CCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHH
Confidence 48999999999999999986 59999887655433334788887776555555555554
No 299
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.33 E-value=4e-06 Score=77.79 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=65.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||..|+.+|..|++.|.+|+|+++. . . .+ . + ++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~--------l~--~--~----------d~---------------- 220 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-L--------LR--G--F----------DQ---------------- 220 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-c--------cc--c--c----------CH----------------
Confidence 47999999999999999999999999999863 1 0 00 0 0 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHH-HHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCcc---ceeecC
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRP-LADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVK---LRGQFD 246 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~---~~~~ad 246 (253)
.+.. +.+.|.++ |+++++++.+++++..++...++.+++ .++.+|
T Consensus 221 -----------------------------~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D 269 (484)
T TIGR01438 221 -----------------------------DCANKVGEHMEEH--GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYD 269 (484)
T ss_pred -----------------------------HHHHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeC
Confidence 0122 22233322 699999999999987666655554433 379999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||+|+|
T Consensus 270 ~vl~a~G 276 (484)
T TIGR01438 270 TVLLAIG 276 (484)
T ss_pred EEEEEec
Confidence 9999987
No 300
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.33 E-value=4e-06 Score=76.43 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=65.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||++|+.+|..|++.|.+|+++++... ... ..+ ++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~~~------------------~~~---~~---------------- 179 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER-ILN------------------KLF---DE---------------- 179 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc-cCc------------------ccc---CH----------------
Confidence 5899999999999999999999999999998642 100 000 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
.+...+...+++. |+++++++.|.+++.++. + +...++..+.+|.||+
T Consensus 180 -----------------------------~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~ 227 (427)
T TIGR03385 180 -----------------------------EMNQIVEEELKKH-EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVIL 227 (427)
T ss_pred -----------------------------HHHHHHHHHHHHc-CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEE
Confidence 0122222222222 699999999999976543 3 3445667899999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 228 a~G 230 (427)
T TIGR03385 228 ATG 230 (427)
T ss_pred CCC
Confidence 987
No 301
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.30 E-value=3.8e-07 Score=74.02 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=33.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg~~ 130 (253)
.+.||+|||+|.+||++||..+++ .++|.|+|..-..-||.|
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 347999999999999999999865 789999998643234444
No 302
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.29 E-value=6e-06 Score=81.26 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=67.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+++|||||+.|+.+|..|.+.|.+|+|+|+.+. . +.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~-l----------------------l~-------------------- 182 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM-L----------------------MA-------------------- 182 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc-c----------------------hh--------------------
Confidence 5799999999999999999999999999998642 0 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC--CeEEEEeCccceeecCEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN--GMWHLSENVKLRGQFDVV 248 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~--~~~~v~~~~~~~~~ad~V 248 (253)
.... ......+...+++. |+++++++.|++|..++ ....+.++++..+.+|.|
T Consensus 183 -------------------~~ld-----~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~V 237 (847)
T PRK14989 183 -------------------EQLD-----QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFI 237 (847)
T ss_pred -------------------hhcC-----HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEE
Confidence 0000 00122223333333 69999999999997643 234466677789999999
Q ss_pred EEcCC
Q 047483 249 VIAHN 253 (253)
Q Consensus 249 V~AtG 253 (253)
|+|+|
T Consensus 238 v~A~G 242 (847)
T PRK14989 238 VFSTG 242 (847)
T ss_pred EECCC
Confidence 99987
No 303
>PTZ00058 glutathione reductase; Provisional
Probab=98.29 E-value=6.7e-06 Score=77.45 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=65.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
.+|+|||||..|+.+|..|.+.|.+|+|+|+++. .. + .+ ++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~-il--------~-----------~~---d~---------------- 278 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR-LL--------R-----------KF---DE---------------- 278 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc-cc--------c-----------cC---CH----------------
Confidence 6899999999999999999999999999998642 00 0 00 00
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCCh-HHHHHHHHhhcCCcEEEcCeEEEEEEEeCC-eEEEEeCc-cceeecCE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGM-RPLADSLLAQTSMVSIVRPCWISNLQPFNG-MWHLSENV-KLRGQFDV 247 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~-~~~v~~~~-~~~~~ad~ 247 (253)
.+ ..+.+.|.+. |+++++++.|.+++.+++ ++.+...+ +..+.+|.
T Consensus 279 -----------------------------~i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~ 327 (561)
T PTZ00058 279 -----------------------------TIINELENDMKKN--NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDY 327 (561)
T ss_pred -----------------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCE
Confidence 01 1222333332 699999999999986543 45544333 34799999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
||+|+|
T Consensus 328 VlvA~G 333 (561)
T PTZ00058 328 VIYCVG 333 (561)
T ss_pred EEECcC
Confidence 999987
No 304
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.29 E-value=6.8e-06 Score=72.02 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQTS--MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
...++..|++.+. |++++++++|++|+.+++.|....++++.++||.||+|+|
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G 190 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAG 190 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCC
Confidence 4666666665433 7999999999999988877653334445899999999998
No 305
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.27 E-value=7.2e-06 Score=78.46 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||..|+.+|..|.+.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 479999999999999999999999999999864
No 306
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.27 E-value=2.7e-06 Score=75.22 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=83.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCCCCCCCccc-cccCCCccccccccceeccCch-hHHHHHHhhh
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNHGLGGRMGT-RMIGPQPLIFDHAAQFFTVNDS-RFHELVDGWL 164 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 164 (253)
...+|++.||-||.-|++|..|.+++ .++..+||.+. =+|.. ..++...+.......+....++ .--.+++.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~---F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL- 78 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD---FSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL- 78 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC---CCcCCCcccCCccccccchhhhccccCCCCchHHHHHH-
Confidence 34589999999999999999999975 88999999753 11111 0112111111111112211111 001111111
Q ss_pred hccccccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC--CeEE--EEeCcc
Q 047483 165 ERGLVRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN--GMWH--LSENVK 240 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~--~~~~--v~~~~~ 240 (253)
...+.++.+-.....++.+....++|+..+.+++ .++|+++|++|...+ .... +.+.++
T Consensus 79 ---------------~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~~~~d~~~~~~~~t~~~ 141 (436)
T COG3486 79 ---------------HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISSLDGDAVVRLFVVTANG 141 (436)
T ss_pred ---------------HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccccCCcceeEEEEEcCCC
Confidence 1112223332222334444556899998888874 889999999884432 2222 445666
Q ss_pred ceeecCEEEEcCC
Q 047483 241 LRGQFDVVVIAHN 253 (253)
Q Consensus 241 ~~~~ad~VV~AtG 253 (253)
..++|+.||+.+|
T Consensus 142 ~~y~ar~lVlg~G 154 (436)
T COG3486 142 TVYRARNLVLGVG 154 (436)
T ss_pred cEEEeeeEEEccC
Confidence 7999999999987
No 307
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.27 E-value=8.1e-06 Score=72.35 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHhhcCCcEEEcCeEEEEEEEe-------CCeE-EEEeCccceeecCEEEEcCC
Q 047483 207 SLLAQTSMVSIVRPCWISNLQPF-------NGMW-HLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 207 ~l~~~~~gv~i~~~t~V~~i~~~-------~~~~-~v~~~~~~~~~ad~VV~AtG 253 (253)
.+.+..++++|...++|.++... ++.| .++.+++..+..|.+|.|+|
T Consensus 160 ~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg 214 (481)
T KOG3855|consen 160 QLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADG 214 (481)
T ss_pred HHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeecccc
Confidence 34445557999999998888652 2234 56678888999999999997
No 308
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.26 E-value=5.8e-06 Score=75.75 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 589999999999999999999999999999864
No 309
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=9.9e-06 Score=74.58 Aligned_cols=33 Identities=42% Similarity=0.805 Sum_probs=31.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||+|..|+.+|..|.+.|.+|+++|+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 589999999999999999999999999999864
No 310
>PRK13984 putative oxidoreductase; Provisional
Probab=98.25 E-value=3.3e-06 Score=80.41 Aligned_cols=40 Identities=35% Similarity=0.551 Sum_probs=35.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGR 129 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~ 129 (253)
...+|+|||+|++|+++|..|+++|++|+|||+.. ..||.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~-~~gG~ 321 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS-KPGGV 321 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCce
Confidence 34789999999999999999999999999999975 35554
No 311
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.22 E-value=2.6e-05 Score=67.69 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGN 123 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~ 123 (253)
+...||+|||||..|++.|+.|+++ |++|+|+|++.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 3458999999999999999999874 79999999964
No 312
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.22 E-value=1.3e-06 Score=78.59 Aligned_cols=40 Identities=40% Similarity=0.705 Sum_probs=36.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+++|||||++|+.+|+.|++.|++|.++||++ .+||+..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKep-siGGrma 164 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEP-SIGGRMA 164 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC-cccccHH
Confidence 579999999999999999999999999999987 4898754
No 313
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.20 E-value=8.4e-06 Score=73.18 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
..+++|||+|+.|+.+|..|.++|++|+++|+... .++....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~-~~~~~~~------------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR-LGGQLLD------------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccc-cchhhhh-------------------------------------
Confidence 36899999999999999999999999999999753 3332100
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEE---EEeCccceeecC
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWH---LSENVKLRGQFD 246 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~---v~~~~~~~~~ad 246 (253)
..+...+..+.++. ++++++++.+.+|+..++... +...++..+.+|
T Consensus 178 -----------------------------~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d 227 (415)
T COG0446 178 -----------------------------PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKAD 227 (415)
T ss_pred -----------------------------HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEee
Confidence 01123333334443 499999999999987765533 455667789999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.|+++.|
T Consensus 228 ~~~~~~g 234 (415)
T COG0446 228 LVIIGPG 234 (415)
T ss_pred EEEEeec
Confidence 9999875
No 314
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.6e-06 Score=73.09 Aligned_cols=110 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
..+||+||||||+|.++|++.+++|++.-|+-.+ .||.. .+--+ . +.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer---fGGQv----ldT~~--I------------------EN------ 256 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---FGGQV----LDTMG--I------------------EN------ 256 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh---hCCee----ccccc--h------------------hh------
Confidence 4599999999999999999999999876655321 34422 11000 0 00
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEe---CCeEEEEeCccceeec
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPF---NGMWHLSENVKLRGQF 245 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~---~~~~~v~~~~~~~~~a 245 (253)
+... .+...+.+..-+++..++++ +++..-.+.+++++. ++-..|++.++..+++
T Consensus 257 ----------------fIsv-----~~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~a~~~~~l~ev~l~nGavLka 314 (520)
T COG3634 257 ----------------FISV-----PETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKA 314 (520)
T ss_pred ----------------eecc-----ccccchHHHHHHHHHHhhcC-chhhhhhhhhcceecCCCCccEEEEecCCceecc
Confidence 0000 01111123344445555565 888888888888774 4557888899999999
Q ss_pred CEEEEcCC
Q 047483 246 DVVVIAHN 253 (253)
Q Consensus 246 d~VV~AtG 253 (253)
+-||++||
T Consensus 315 ktvIlstG 322 (520)
T COG3634 315 RTVILATG 322 (520)
T ss_pred ceEEEecC
Confidence 99999998
No 315
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.18 E-value=6.3e-06 Score=74.02 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccc-eeecCEEEEcCC
Q 047483 202 RPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKL-RGQFDVVVIAHN 253 (253)
Q Consensus 202 ~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~-~~~ad~VV~AtG 253 (253)
..+++.++++. |++|++++.|++++.+ .+.+ .++. .+.++.||-|+|
T Consensus 212 ~~~a~~~L~~~-GV~v~l~~~Vt~v~~~--~v~~--~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 212 SKYAERALEKL-GVEVLLGTPVTEVTPD--GVTL--KDGEEEIPADTVVWAAG 259 (405)
T ss_pred HHHHHHHHHHC-CCEEEcCCceEEECCC--cEEE--ccCCeeEecCEEEEcCC
Confidence 45555555554 6999999999999754 3433 3444 599999999987
No 316
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.15 E-value=1.9e-06 Score=74.52 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=29.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~ 124 (253)
+|+||||+|.+|+.+|.+|++.| .+|+|||++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 59999999999999999999997 79999999854
No 317
>PLN02546 glutathione reductase
Probab=98.15 E-value=2e-05 Score=74.29 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 589999999999999999999999999999864
No 318
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.14 E-value=1.8e-05 Score=72.15 Aligned_cols=36 Identities=11% Similarity=-0.097 Sum_probs=29.1
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
|++++++++|+++.. +. +.++++.++.+|.||.|.|
T Consensus 242 gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 242 GVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred CCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccC
Confidence 699999999999864 33 3456677899999999987
No 319
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.12 E-value=6.2e-06 Score=73.08 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=30.4
Q ss_pred CcEEEcCeEEEEEEEeC-CeEEEEeCc-----cceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFN-GMWHLSENV-----KLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~-~~~~v~~~~-----~~~~~ad~VV~AtG 253 (253)
.+.|+.+++|++++..+ ++|.+...+ ...+.+|.||+|||
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 48999999999999988 488887443 35789999999998
No 320
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.10 E-value=4.1e-06 Score=80.51 Aligned_cols=41 Identities=51% Similarity=0.802 Sum_probs=36.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...+|+|||||++||++|+.|++.|++|+|||+.. ..||.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~-~~GG~l 366 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP-EIGGLL 366 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCcee
Confidence 34799999999999999999999999999999975 477754
No 321
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.09 E-value=1.7e-06 Score=78.76 Aligned_cols=41 Identities=37% Similarity=0.679 Sum_probs=36.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
++||+|||||.+|..||+..+-+|++|.++|+++.++|-..
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 48999999999999999999999999999999976666443
No 322
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.09 E-value=9.4e-06 Score=68.88 Aligned_cols=39 Identities=28% Similarity=0.584 Sum_probs=33.2
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcC------CeEEEEcCCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRG------VKSTVFDTGNHGLGGR 129 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g------~~v~~~e~~~~~~gg~ 129 (253)
..+|+|||||+.|.++||.|++++ ..|+|||+... .||.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I-A~ga 54 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI-AGGA 54 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc-cccc
Confidence 368999999999999999999987 89999999743 4443
No 323
>PRK02106 choline dehydrogenase; Validated
Probab=98.01 E-value=7e-06 Score=77.53 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHhH-cCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDK-RGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~ 123 (253)
.++|+||||+|.+|+.+|..|++ .|++|+|||++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45899999999999999999999 799999999984
No 324
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.01 E-value=9.1e-05 Score=67.62 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=33.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCcc
Q 047483 91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~ 131 (253)
.+.=|||+|+++|++|..|.+. |-+|+|||+.. ..||.+-
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~-~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD-VPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC-CCCCccc
Confidence 4677999999999999999885 67999999975 4666443
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.01 E-value=6.9e-05 Score=70.13 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 589999999999999999999999999999753
No 326
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.97 E-value=1.7e-05 Score=74.18 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=34.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
+||+|||+|++|+.+|+.|+++|++|+|||++.. .|+.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~-~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA-DSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCc-cCCCc
Confidence 5999999999999999999999999999999853 55555
No 327
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.96 E-value=9.8e-06 Score=79.60 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
...+|+|||||++||++|+.|+++|++|+|+|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4579999999999999999999999999999985
No 328
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.90 E-value=2e-05 Score=72.47 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=33.4
Q ss_pred CcEEEECcCHHHHHHHHHHh-HcCCeEEEEcCCCCCCCCCc
Q 047483 91 PHVGIIGGGMAGLACALSLD-KRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~~~~gg~~ 130 (253)
.+|+|||||++|+.+|..|. +.|++|+|||+.+ .+||.+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p-~pgGLv 79 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP-NPYGLI 79 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC-CCccEE
Confidence 68999999999999999865 5699999999986 477743
No 329
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.90 E-value=1.4e-05 Score=72.71 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=31.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+||+|||+|++|+++|+.|+++|++|+|+|++.
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 799999999999999999999999999999863
No 330
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.90 E-value=1.5e-05 Score=68.89 Aligned_cols=34 Identities=41% Similarity=0.888 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++||+|||||++|++||++|.++|+++.|+.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999999864
No 331
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.87 E-value=0.00022 Score=61.28 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
.+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 58999999999999999999999999999985
No 332
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.87 E-value=7.2e-05 Score=67.16 Aligned_cols=38 Identities=34% Similarity=0.598 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
++|++|||+|..||.+|..|++.|.+|+++|+. +..||
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerr-hv~gG 51 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR-HVIGG 51 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEe-eecCc
Confidence 489999999999999999999999999999997 34555
No 333
>PRK10262 thioredoxin reductase; Provisional
Probab=97.86 E-value=0.00013 Score=63.92 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|||+|..|+.+|..|++.|.+|+++++..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 3689999999999999999999999999999863
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.86 E-value=0.0002 Score=65.86 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999863
No 335
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.83 E-value=0.00021 Score=65.82 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~ 122 (253)
..+|+|||+|.+|+-+|..|.+.|. +|+++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3689999999999999999999998 89999975
No 336
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.81 E-value=0.00016 Score=64.40 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=29.1
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
++++++++.|++++. + .+.+.++..+.+|.||+|+|
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATG 240 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccC
Confidence 699999999998853 2 34455667899999999987
No 337
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00011 Score=66.47 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=33.5
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLG 127 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~g 127 (253)
.+||+|||||-+|+.+|.+.++-|.+.+++-.+-..+|
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 38999999999999999999999999999988654444
No 338
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.79 E-value=3.3e-05 Score=73.06 Aligned_cols=41 Identities=44% Similarity=0.772 Sum_probs=35.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
...+|+|||+|++||++|+.|++.|++|+|+|+.. ..||.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~-~~GG~l 176 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP-KLGGMM 176 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCee
Confidence 34689999999999999999999999999999975 477644
No 339
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.79 E-value=2.3e-05 Score=73.63 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=33.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..++|+||||+|.+|+.+|..|++.|++|+|||++.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 345899999999999999999998899999999973
No 340
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=0.00025 Score=63.07 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=29.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVK-STVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~ 122 (253)
.+|+|||+|..|+.+|..|.+.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999987 9999975
No 341
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.78 E-value=0.00022 Score=65.04 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
+.++||+|+|.|+.-+.+|-.|++.|.+|+.+|+++ --||.+++.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~-yYGg~~asl 46 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND-YYGGEWASL 46 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SSCGGG-EE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC-CcCCchhcc
Confidence 456999999999999999999999999999999996 478866543
No 342
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.73 E-value=3e-05 Score=71.11 Aligned_cols=40 Identities=40% Similarity=0.506 Sum_probs=36.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMG 131 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~ 131 (253)
.+|+|||+||+||++|..|++.|+.|+|+|+.. ..||++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~-~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA-LDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC-CCceeEE
Confidence 689999999999999999999999999999975 5888653
No 343
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.71 E-value=0.00035 Score=65.40 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||.+|+.+|..|+..+.+|+|+++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 589999999999999999999999999999764
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=97.71 E-value=0.0006 Score=63.03 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..+|+|||||.+|+-+|..|.+.|.+|+++++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 468999999999999999999999999999975
No 345
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.67 E-value=4e-05 Score=71.96 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=30.4
Q ss_pred cEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 123 (253)
|+||||+|.+|+.+|.+|++.| ++|+|||++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999985
No 346
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.61 E-value=0.00044 Score=62.61 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccc
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGL 168 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
....|++||+|..|+.+|..|...+.+|+++++.+. . .+ .+|
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~-~--------~~----------~lf------------------- 253 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW-L--------LP----------RLF------------------- 253 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc-c--------hh----------hhh-------------------
Confidence 346799999999999999999999999999998642 0 00 000
Q ss_pred cccccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeC-Ce-EEEEeCccceeecC
Q 047483 169 VRPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFN-GM-WHLSENVKLRGQFD 246 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~-~~-~~v~~~~~~~~~ad 246 (253)
...+++....+.+. ++++++.++.+.+++.+. +. ..|...++..+.||
T Consensus 254 -----------------------------~~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 254 -----------------------------GPSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred -----------------------------hHHHHHHHHHHHHh-cCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 00123333333332 269999999999998765 33 45667888999999
Q ss_pred EEEEcCC
Q 047483 247 VVVIAHN 253 (253)
Q Consensus 247 ~VV~AtG 253 (253)
.||+++|
T Consensus 304 lvv~GiG 310 (478)
T KOG1336|consen 304 LVVVGIG 310 (478)
T ss_pred eEEEeec
Confidence 9999887
No 347
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00035 Score=60.59 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|-|||||++|..+||+++++|++|.++|-++
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 468999999999999999999999999999875
No 348
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.55 E-value=0.00085 Score=62.82 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhc--CCcEEEcCeEEEEEEEeCCeEE-EEe--C-c--cceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQT--SMVSIVRPCWISNLQPFNGMWH-LSE--N-V--KLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~~--~gv~i~~~t~V~~i~~~~~~~~-v~~--~-~--~~~~~ad~VV~AtG 253 (253)
...++..++... .|++|+++++|++|+++++.+. +.. . + ...++|+.||+|+|
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG 187 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAG 187 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCC
Confidence 455555554433 2799999999999998777642 332 1 2 24799999999998
No 349
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.47 E-value=4.3e-05 Score=65.83 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=29.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc-C-CeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR-G-VKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~-g-~~v~~~e~~~ 123 (253)
.+.|+|||||..|+++|..+.++ | -+|.|+|..+
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 47999999999999999999886 4 4899999764
No 350
>PLN02785 Protein HOTHEAD
Probab=97.47 E-value=0.00013 Score=69.17 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+||||||.+|+.+|..|++ +.+|+|||++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 3899999999999999999999 69999999985
No 351
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.41 E-value=0.0019 Score=62.20 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
..+|+|||+|.+|+-+|..|.+.|. +|+|+++..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999986 699998753
No 352
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.00088 Score=58.58 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=37.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~ 133 (253)
.+|.+|||||..|++.|.+.++.|.+|.|+|.. .+.||.+-..
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~-f~lGGTCVn~ 62 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELP-FGLGGTCVNV 62 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecC-CCcCceEEee
Confidence 489999999999999999999999999999975 3688876443
No 353
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00029 Score=62.11 Aligned_cols=37 Identities=35% Similarity=0.447 Sum_probs=32.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCCCCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGNHGLGG 128 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~~gg 128 (253)
..|+|||+||+|+.+|++|.++ +++|.|+|+.+. +.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFG 59 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFG 59 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccc
Confidence 5899999999999999999985 699999999864 555
No 354
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.34 E-value=0.0025 Score=62.43 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~ 123 (253)
..+|+|||||.+|+-+|..|.+.|.+ |+|+++..
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999987 99999763
No 355
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.33 E-value=0.0033 Score=58.22 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=28.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~ 122 (253)
..+|+|||+|.+|+-+|..+.+.|. +|++++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 3589999999999999999888886 78877654
No 356
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.25 E-value=0.0033 Score=59.47 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|||||.+|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3689999999999999999999999999999863
No 357
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00038 Score=68.66 Aligned_cols=40 Identities=43% Similarity=0.674 Sum_probs=36.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRM 130 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~ 130 (253)
..+|+|||+|++||++|-.|-+.|+.|+|+||.. ..||-+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~d-r~ggll 1824 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD-RVGGLL 1824 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC-CcCcee
Confidence 3689999999999999999999999999999985 588743
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.21 E-value=0.0037 Score=62.56 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..+|+|||||.+|+-+|..+.+.|.+|+++.++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 368999999999999999999999999999875
No 359
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.15 E-value=0.0051 Score=62.06 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~ 122 (253)
..+|+|||+|..|+.+|..|++.|. .|+|+|..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 3689999999999999999999995 68899875
No 360
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.14 E-value=0.0065 Score=56.25 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|.+|+-+|..+.+.|. +|+|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 689999999999999999999995 799999863
No 361
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.08 E-value=0.00066 Score=64.53 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=67.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhccccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLVR 170 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
..-+|||||+-||.+|..|.+.|.+|+|++-.+. + +...++.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~-----------------------l-------MerQLD~-------- 187 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT-----------------------L-------MERQLDR-------- 187 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecch-----------------------H-------HHHhhhh--------
Confidence 4579999999999999999999999999996531 0 0000000
Q ss_pred cccccccceeeCCeeeeCCCCCCccccCCChHHHHHHHHhhcCCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEE
Q 047483 171 PWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLADSLLAQTSMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVI 250 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~ 250 (253)
. -..+++..+++. |+++++++..+.|...+.-..+.+.++..+.||.||.
T Consensus 188 --------------------~---------ag~lL~~~le~~-Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~ 237 (793)
T COG1251 188 --------------------T---------AGRLLRRKLEDL-GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVM 237 (793)
T ss_pred --------------------H---------HHHHHHHHHHhh-cceeecccchhhhhcCcceeeEeecCCCcccceeEEE
Confidence 0 023334333333 6899988888888764444467788999999999999
Q ss_pred cCC
Q 047483 251 AHN 253 (253)
Q Consensus 251 AtG 253 (253)
|+|
T Consensus 238 a~G 240 (793)
T COG1251 238 AVG 240 (793)
T ss_pred ecc
Confidence 987
No 362
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.08 E-value=0.00063 Score=63.81 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=32.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHc-CCeEEEEcCCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKR-GVKSTVFDTGNH 124 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~ 124 (253)
.++|.+|||||-+|+.+|..|++. .++|+|+|++..
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 349999999999999999999997 689999999754
No 363
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.05 E-value=0.0035 Score=56.89 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=32.9
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
++++++++.|+.++..... |...++.++.++.+|+|||
T Consensus 141 gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATG 178 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATG 178 (478)
T ss_pred CceEEEcceeEEeeccccE--EEeCCCceeecceEEEeec
Confidence 5999999999999877665 4467788999999999998
No 364
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.01 E-value=0.0022 Score=59.17 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..+|+|||+|.+|+-.|..|++.+.+|+++.+.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 368999999999999999999999999999975
No 365
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.96 E-value=0.0087 Score=59.88 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=29.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc-C-CeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR-G-VKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~-g-~~v~~~e~~~ 123 (253)
..+|+|||||.+|+-+|..+.+. | .+|+|+.++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 46899999999999999998887 5 4899999863
No 366
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.95 E-value=0.011 Score=57.18 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=29.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||||..|+-+|..+.+.|. +|+++.+..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 589999999999999999999986 799988753
No 367
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00092 Score=58.28 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDT 121 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 121 (253)
.+|.+|||||.+||+||.+.+..|.+|.++|-
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 48999999999999999999999999999996
No 368
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.90 E-value=0.002 Score=57.67 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=37.5
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
|+.++-|..|.++.+......+...+|.+++.|+||+|+|
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG 446 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVG 446 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEec
Confidence 7999999999999998888889999999999999999987
No 369
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.85 E-value=0.01 Score=59.48 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=29.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHc-CC-eEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKR-GV-KSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~-g~-~v~~~e~~~ 123 (253)
..+|+|||||.+|+-+|..+.+. |. +|+|++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 46899999999999999998886 85 899999863
No 370
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.73 E-value=0.0023 Score=50.22 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=30.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.|+|||||..|.++|..|+++|.+|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999864
No 371
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.71 E-value=0.0013 Score=58.84 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=27.7
Q ss_pred CcEEEECcCHHHHHHHHHHhH--------------cCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDK--------------RGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~--------------~g~~v~~~e~~~ 123 (253)
..++||||||+|..+|-+|+. .-++|+++|+.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 579999999999999999875 246888888764
No 372
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.65 E-value=0.0031 Score=50.73 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=28.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999999999999999999999999999864
No 373
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.58 E-value=0.014 Score=55.38 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=35.0
Q ss_pred HHHHHHHHhhc--CCcEEEcCeEEEEEEEe-CCeEE---E-EeCcc--ceeecCEEEEcCC
Q 047483 202 RPLADSLLAQT--SMVSIVRPCWISNLQPF-NGMWH---L-SENVK--LRGQFDVVVIAHN 253 (253)
Q Consensus 202 ~~l~~~l~~~~--~gv~i~~~t~V~~i~~~-~~~~~---v-~~~~~--~~~~ad~VV~AtG 253 (253)
..++..|.++. .+++|+.++.++++..+ ++.+. + ...++ ..+.|+.||+|||
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 44555555433 27999999999999875 44432 2 11233 3578999999998
No 374
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.49 E-value=0.012 Score=52.58 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.6
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
++.++.+++|+++......+.+ .++ .+.+|.+|+|+|
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~--~~g-~~~yd~LvlatG 103 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLL--DDG-EIEYDYLVLATG 103 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEE--CCC-cccccEEEEcCC
Confidence 5899999999999887776554 343 899999999998
No 375
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.47 E-value=0.025 Score=50.67 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=38.1
Q ss_pred hHHHHHHHHhh-----cCCcEEEcCeEEEEEEEeCCe-EEEEe-----CccceeecCEEEEcCC
Q 047483 201 MRPLADSLLAQ-----TSMVSIVRPCWISNLQPFNGM-WHLSE-----NVKLRGQFDVVVIAHN 253 (253)
Q Consensus 201 ~~~l~~~l~~~-----~~gv~i~~~t~V~~i~~~~~~-~~v~~-----~~~~~~~ad~VV~AtG 253 (253)
+.++.+.|.++ .+.+.++.+++|.+++..+++ +.+.. ....+++.|.||+|||
T Consensus 274 i~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 274 IEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred HHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc
Confidence 45555554443 235899999999999988766 66552 2335789999999998
No 376
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.46 E-value=0.0036 Score=50.63 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=26.7
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..||.+|..|+++|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 69999999999999999999999999999874
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.45 E-value=0.0045 Score=57.41 Aligned_cols=32 Identities=38% Similarity=0.500 Sum_probs=30.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
.+|+|||+|.+|+++|..|.++|++|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999965
No 378
>PRK13984 putative oxidoreductase; Provisional
Probab=96.44 E-value=0.027 Score=53.83 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC------eEEEEc
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV------KSTVFD 120 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~------~v~~~e 120 (253)
.+|+|||||.+|+-+|..|.+.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 589999999999999999988753 566653
No 379
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.43 E-value=0.041 Score=53.04 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
..+|+|||+|..|+-+|..+.+.|. +|+++++..
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999888885 899998753
No 380
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.43 E-value=0.0057 Score=47.33 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=29.2
Q ss_pred EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
|+|+|+|..|+..|+.|++.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999864
No 381
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.42 E-value=0.042 Score=55.60 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=28.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~ 122 (253)
..+|+|||||.+|+-+|..+.+.|. .|+++.+.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4689999999999999999999997 47777764
No 382
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.31 E-value=0.0053 Score=53.65 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=30.4
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999864
No 383
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.29 E-value=0.039 Score=49.73 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+.+|+|+|+|.+|.++...|-..-++|+|+..+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 3689999999999999999988889999999764
No 384
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.0066 Score=55.93 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=30.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|+|||.|.+|+++|..|.++|++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999864
No 385
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.18 E-value=0.032 Score=53.45 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=32.8
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
+++++.+.+|+.|.++... |+++.+..+.+|.+|+|||
T Consensus 73 ~i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLilATG 110 (793)
T COG1251 73 GITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLIIATG 110 (793)
T ss_pred CcEEEcCCeeEEeccCcce--EEccCCcEeecceeEEecC
Confidence 6999999999999887653 4567788999999999998
No 386
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.0093 Score=51.63 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 387
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.15 E-value=0.016 Score=54.43 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=29.8
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|||+|.+|+=.|..|++...+|.+.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 4689999999999999999999999999988753
No 388
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.061 Score=48.09 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=35.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCC
Q 047483 88 SSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGG 128 (253)
Q Consensus 88 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg 128 (253)
..++||+|+|-|+.=+..+-.|+..|.+|+.+||++. -||
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~y-YG~ 41 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDY-YGG 41 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCC-CCc
Confidence 3459999999999999999999999999999999864 555
No 389
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.0067 Score=52.02 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=27.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-------CeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-------VKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-------~~v~~~e~~ 122 (253)
.+|+|||+|..||++|+.+.+.+ .+|+|++-.
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 68999999999999999888843 689998754
No 390
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.011 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=30.4
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+++|||+|-.|...|..|.+.|++|+++|++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 69999999999999999999999999999964
No 391
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.95 E-value=0.014 Score=50.55 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..|++.|++|+++|..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999999864
No 392
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.011 Score=50.99 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999864
No 393
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.017 Score=50.84 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 394
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.86 E-value=0.047 Score=49.86 Aligned_cols=40 Identities=10% Similarity=-0.124 Sum_probs=31.3
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEE-eCcc--ceeecCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLS-ENVK--LRGQFDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~-~~~~--~~~~ad~VV~AtG 253 (253)
|++++++++|++++.+++.+... ..++ ..++||.||+|+|
T Consensus 273 Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtG 315 (422)
T PRK05329 273 GGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATG 315 (422)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCC
Confidence 69999999999999877765432 3222 4589999999998
No 395
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.013 Score=50.60 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999863
No 396
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.85 E-value=0.016 Score=50.79 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||+|..|...|..|++.|++|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 579999999999999999999999999999863
No 397
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.80 E-value=0.038 Score=50.37 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=32.2
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEeCc-cceee--cCEEEEcCC
Q 047483 214 MVSIVRPCWISNLQPFNGMWHLSENV-KLRGQ--FDVVVIAHN 253 (253)
Q Consensus 214 gv~i~~~t~V~~i~~~~~~~~v~~~~-~~~~~--ad~VV~AtG 253 (253)
+++++.+++|++|+.++..+.+...+ +..+. +|+||+|||
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG 100 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPG 100 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCC
Confidence 58999999999998877777775432 34677 999999998
No 398
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.76 E-value=0.013 Score=42.60 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=29.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 68999999999999999999999999999976
No 399
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.72 E-value=0.017 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|||+|.++.-+|+.|++.|.+|+++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3789999999999999999999999999998864
No 400
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.71 E-value=0.13 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=28.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 123 (253)
..+|+|||+|..|+-+|..+.+.| .+|+|+.+..
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 367999999999999999888888 5788888753
No 401
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.66 E-value=0.018 Score=52.95 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999863
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.66 E-value=0.022 Score=46.79 Aligned_cols=32 Identities=31% Similarity=0.327 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..|+|||||.+|..-+..|.+.|.+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 58999999999999999999999999999875
No 403
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.65 E-value=0.021 Score=49.48 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 404
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.018 Score=49.90 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 405
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.23 Score=43.36 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||||-+.+--|+.|.+-+.+|+++=|++
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~ 176 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence 599999999999999999999999999999874
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.58 E-value=0.026 Score=44.37 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=29.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDT 121 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 121 (253)
.+|+|||||-.|..-|..|.+.|.+|+|+..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 6899999999999999999999999999964
No 407
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.51 E-value=0.027 Score=46.19 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 68999999999999999999999999999874
No 408
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.02 Score=51.14 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..||..|..|++.|++|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999999864
No 409
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.50 E-value=0.021 Score=49.88 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
.+|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999986
No 410
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.025 Score=49.31 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999753
No 411
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.47 E-value=0.027 Score=44.63 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 689999999999999999999999999999853
No 412
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.02 Score=49.28 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999764
No 413
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.47 E-value=0.019 Score=49.80 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=28.9
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDT 121 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 121 (253)
+|+|||+|..|...|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 414
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.46 E-value=0.022 Score=51.93 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||.|..|+.+|..|+++|++|+++|++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 479999999999999999999999999999864
No 415
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.41 E-value=0.24 Score=46.09 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=29.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 123 (253)
..+|+|||||..|+-+|..+.+.| .+|+++|..+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 368999999999999988888877 5799999764
No 416
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.38 E-value=0.029 Score=49.34 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999853
No 417
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.37 E-value=0.023 Score=49.17 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=29.4
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
+|+|||+|..|...|..|++.|.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999984
No 418
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.36 E-value=0.034 Score=42.41 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=30.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCe-EEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVK-STVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~ 123 (253)
.+++|||+|-+|-++++.|.+.|.+ |+|+.|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 6899999999999999999999986 99999863
No 419
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.27 E-value=0.024 Score=50.11 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
.+|+|||+|..|...|..|+++|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999985
No 420
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.23 E-value=0.036 Score=45.35 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~ 122 (253)
.+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 69999986
No 421
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.029 Score=50.25 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=41.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCcccccc
Q 047483 87 VSSDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMI 135 (253)
Q Consensus 87 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~ 135 (253)
.+.++||+|||-|..=..+|.+.++.|.+|+=+|+++. -||.|....+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~y-YGg~waSfSm 52 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEY-YGGNWASFSM 52 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccc-cCCcccceee
Confidence 45569999999999999999999999999999999964 8888876544
No 422
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.16 E-value=0.049 Score=48.01 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=62.9
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCCCCCCCccccccCCCccccccccceeccCchhHHHHHHhhhhcccc
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNHGLGGRMGTRMIGPQPLIFDHAAQFFTVNDSRFHELVDGWLERGLV 169 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
+.+++|||||..++.+|--++-.|.++.++=|.... +...++.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-----------------------LR~FD~~-------------- 231 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-----------------------LRGFDEM-------------- 231 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-----------------------hcchhHH--------------
Confidence 368999999999999998888888888888775320 0000000
Q ss_pred ccccccccceeeCCeeeeCCCCCCccccCCChHHHH-HHHHhhcCCcEEEcCeEEEEEEEeCCe-EEEEeCccceeecCE
Q 047483 170 RPWEGVIGELEVGGQFTPFPSSPPKYIGVNGMRPLA-DSLLAQTSMVSIVRPCWISNLQPFNGM-WHLSENVKLRGQFDV 247 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~gv~i~~~t~V~~i~~~~~~-~~v~~~~~~~~~ad~ 247 (253)
+++.+ +.|.. .|++++.++.++.+.+.+++ ..+.++.+....+|.
T Consensus 232 -------------------------------i~~~v~~~~~~--~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~ 278 (478)
T KOG0405|consen 232 -------------------------------ISDLVTEHLEG--RGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDT 278 (478)
T ss_pred -------------------------------HHHHHHHHhhh--cceeecccccceeeeecCCCceEEEEeccccccccE
Confidence 12222 22222 26999999999999988766 334445544556999
Q ss_pred EEEcCC
Q 047483 248 VVIAHN 253 (253)
Q Consensus 248 VV~AtG 253 (253)
|+.|+|
T Consensus 279 llwAiG 284 (478)
T KOG0405|consen 279 LLWAIG 284 (478)
T ss_pred EEEEec
Confidence 999987
No 423
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.07 E-value=0.11 Score=46.78 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCcEEEcCeEEEEEEEeCCeEEEEeCccceeecCEEEEcCC
Q 047483 213 SMVSIVRPCWISNLQPFNGMWHLSENVKLRGQFDVVVIAHN 253 (253)
Q Consensus 213 ~gv~i~~~t~V~~i~~~~~~~~v~~~~~~~~~ad~VV~AtG 253 (253)
.|+-+..+.+|..|...+..+++ ++|.+|.+|..++|||
T Consensus 270 GGvAvl~G~kvvkid~~d~~V~L--nDG~~I~YdkcLIATG 308 (659)
T KOG1346|consen 270 GGVAVLRGRKVVKIDEEDKKVIL--NDGTTIGYDKCLIATG 308 (659)
T ss_pred CceEEEeccceEEeecccCeEEe--cCCcEeehhheeeecC
Confidence 37899999999999888776654 6788999999999998
No 424
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.04 E-value=0.046 Score=43.46 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.0
Q ss_pred CCcEEEECcCH-HHHHHHHHHhHcCCeEEEEcCC
Q 047483 90 DPHVGIIGGGM-AGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..+|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 47899999996 6999999999999999999986
No 425
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.91 E-value=0.032 Score=50.75 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..|+.+|..|+++|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 58999999999999999999999999999864
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.89 E-value=0.052 Score=41.25 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 579999999999999999999997 899999863
No 427
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.86 E-value=0.046 Score=49.08 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..+|+|||+|.+|+.+|..|...|.+|+++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 367999999999999999999999999999985
No 428
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.84 E-value=0.059 Score=39.52 Aligned_cols=31 Identities=35% Similarity=0.430 Sum_probs=27.9
Q ss_pred EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
|+|+|.|..|...+..|.+.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999888999999974
No 429
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.84 E-value=0.045 Score=47.86 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.4
Q ss_pred cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 123 (253)
+|.|||+|..|.++|+.|+.+| .+|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999864
No 430
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.77 E-value=0.056 Score=47.19 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||+|..|.++|..|++.|++|+++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999999864
No 431
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.76 E-value=0.048 Score=47.65 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=29.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|.|||+|..|..+|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 369999999999999999999886 899999853
No 432
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.65 E-value=0.049 Score=47.88 Aligned_cols=32 Identities=22% Similarity=0.518 Sum_probs=29.8
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||+|..|...|..|++.|.+|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999853
No 433
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.59 E-value=0.054 Score=47.36 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||+|..|...|..|++.|++|++++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 434
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.57 E-value=0.062 Score=50.22 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..|+++|++|+++|+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 435
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.55 E-value=0.066 Score=42.17 Aligned_cols=33 Identities=39% Similarity=0.535 Sum_probs=28.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||-|..|...|..|.++|++|.++++..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 379999999999999999999999999999863
No 436
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.54 E-value=0.052 Score=46.70 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=29.8
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..|.+.|..|.++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999863
No 437
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.50 E-value=0.063 Score=50.14 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 438
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.40 E-value=0.069 Score=50.00 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..|+++|++|+++|+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 439
>PRK04148 hypothetical protein; Provisional
Probab=94.40 E-value=0.05 Score=41.50 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.++++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 579999999 99999999999999999999875
No 440
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.36 E-value=0.033 Score=47.16 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=25.9
Q ss_pred EEEECcCHHHHHHHHHHhHc--CCeEEEEcCC
Q 047483 93 VGIIGGGMAGLACALSLDKR--GVKSTVFDTG 122 (253)
Q Consensus 93 v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~ 122 (253)
.+|||||++|.+||-.|+.. ..+|+++-..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 68999999999999999985 5688888764
No 441
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.34 E-value=0.072 Score=48.42 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
...|+|+|+|+.|+.+|..|...|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4689999999999999999999999999999864
No 442
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.29 E-value=0.074 Score=49.66 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=31.1
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 443
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.13 E-value=0.088 Score=46.68 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 689999999999999999999997 899999864
No 444
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.08 E-value=0.12 Score=45.59 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 124 (253)
.+|+|||+|..|..+|+.|+..|+ +|+|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 9999998653
No 445
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.03 E-value=0.095 Score=46.48 Aligned_cols=33 Identities=45% Similarity=0.532 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 689999999999999999999998 999999863
No 446
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.02 E-value=0.1 Score=44.63 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 123 (253)
..|+|||.|-.|..+|..|++.| -+++|+|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 68999999999999999999999 5899999864
No 447
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.01 E-value=0.069 Score=52.14 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..++..|++|+++|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 448
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.00 E-value=0.12 Score=39.75 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=28.8
Q ss_pred cEEEECc-CHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483 92 HVGIIGG-GMAGLACALSLDKRGV--KSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~-G~~G~~~a~~l~~~g~--~v~~~e~~~ 123 (253)
+|+|||+ |..|.++|+.|...++ ++.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 9999999999999864 799999863
No 449
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.96 E-value=0.098 Score=45.57 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=29.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|..|..+|+.|+..|+ +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999875 999999854
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.94 E-value=0.052 Score=47.03 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
-+|+|||||.+|.-+|.-+...|.+|+|+|.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 68999999999999999999999999999987
No 451
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.92 E-value=0.12 Score=42.39 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
..|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 689999999999999999999997 899999863
No 452
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.92 E-value=0.11 Score=45.01 Aligned_cols=33 Identities=39% Similarity=0.487 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|-+|-++|+.|++.|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999997 799999863
No 453
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.90 E-value=0.095 Score=43.73 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=29.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC---eEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV---KSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~---~v~~~e~~ 122 (253)
.+|+|+|+|-+|..+|..|.+.|. +|.|+++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 589999999999999999999997 59999986
No 454
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.88 E-value=0.076 Score=51.82 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 455
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.86 E-value=0.079 Score=47.91 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.9
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..|+.+|..++. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 58999999999999988875 99999999864
No 456
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.82 E-value=0.13 Score=42.09 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|+|+|.|-.|..+|..|.+.|.+|+++|.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999999753
No 457
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.78 E-value=0.11 Score=41.51 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=29.2
Q ss_pred cEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
+|+|||+|-.|...|..|++.|. +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999864
No 458
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.77 E-value=0.091 Score=45.38 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=29.7
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 38899999999999999999999999999864
No 459
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.75 E-value=0.095 Score=48.59 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHc--CCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR--GVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~ 123 (253)
.+|+|||.|..|+.+|..|+++ |++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 3699999999999999999998 58899999864
No 460
>PLN02712 arogenate dehydrogenase
Probab=93.74 E-value=0.27 Score=47.66 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=30.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..|.|||.|..|-+.|..|.+.|++|+++++.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999985
No 461
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.71 E-value=0.13 Score=39.32 Aligned_cols=32 Identities=38% Similarity=0.483 Sum_probs=29.3
Q ss_pred cEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
+|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999997 799999864
No 462
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.68 E-value=0.23 Score=46.09 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=41.2
Q ss_pred cCCChHHHHHHHHhhcC--CcEEEcCeEEEEEEEeCCe--EEEEeCc----cceeecCEEEEcC
Q 047483 197 GVNGMRPLADSLLAQTS--MVSIVRPCWISNLQPFNGM--WHLSENV----KLRGQFDVVVIAH 252 (253)
Q Consensus 197 ~~~~~~~l~~~l~~~~~--gv~i~~~t~V~~i~~~~~~--~~v~~~~----~~~~~ad~VV~At 252 (253)
...+++.+.++|.+... |++|+++++|++|..+++. +.+..++ +..+.||.||.+.
T Consensus 227 ~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~ 290 (492)
T TIGR02733 227 LHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANL 290 (492)
T ss_pred ecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECC
Confidence 34568888888877653 7899999999999887664 3332222 1478999999875
No 463
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.63 E-value=0.18 Score=35.11 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=28.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHc-CCeEEEEcC
Q 047483 91 PHVGIIGGGMAGLACALSLDKR-GVKSTVFDT 121 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~ 121 (253)
.+++|+|.|.+|..++..|.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6799999999999999999998 689999998
No 464
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.54 E-value=0.14 Score=44.62 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|||.|.+|..++..|.+.|.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999864
No 465
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.53 E-value=0.12 Score=47.95 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
.+|+|+|.|-+|.++|..|.++|.+|++.|.+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 57999999999999999999999999999964
No 466
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.52 E-value=0.1 Score=45.40 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.2
Q ss_pred EEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 93 VGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 93 v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
|.|||+|..|..+|+.|+.+|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999876 999999864
No 467
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.45 E-value=0.12 Score=47.38 Aligned_cols=33 Identities=33% Similarity=0.318 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|+|+|+|-+|+++|..|++.|++|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999999999999999753
No 468
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.15 Score=47.61 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=29.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..|+|+|.|.+|++++..|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999964
No 469
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.40 E-value=0.13 Score=46.25 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=31.1
Q ss_pred CCCcEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 89 SDPHVGIIG-GGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 89 ~~~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
....|+||| .|..|-++|..|.++|+.|+++++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 446799999 8999999999999999999999985
No 470
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.40 E-value=0.1 Score=51.17 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|+.++..|++|+++|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 469999999999999999999999999999864
No 471
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.38 E-value=0.15 Score=42.14 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999997 599999863
No 472
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.37 E-value=0.13 Score=44.87 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.1
Q ss_pred cEEEECcCHHHHHHHHHHhHcC--CeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRG--VKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 123 (253)
.|+|||+|-+|.++|+.|+..| .+++++|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5899999999999999999998 4899999864
No 473
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.30 E-value=0.12 Score=39.67 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=27.1
Q ss_pred EEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 93 VGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 93 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
++|+|+|..+..++..+...|++|+|+|.++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5799999999999999999999999999874
No 474
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.30 E-value=0.14 Score=42.28 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=29.2
Q ss_pred cEEEEC-cCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIG-GGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.||| +|..|.++|..|++.|++|+++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998864
No 475
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27 E-value=0.13 Score=47.55 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|+|.|.+|+++|..|.+.|++|++.|++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999753
No 476
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.24 E-value=0.17 Score=44.31 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=29.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 123 (253)
.+|.|||+|-.|.++|+.|+..|. ++.|+|.+.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 589999999999999999998875 799999754
No 477
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.21 E-value=0.16 Score=44.00 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
...++|||.|-+|..+|..|...|.+|+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 478
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.20 E-value=0.11 Score=43.14 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGNH 124 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 124 (253)
..|.|||+|..|...|.-.+..|++|.+++++..
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 6799999999999999999999999999998753
No 479
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.16 E-value=0.16 Score=47.45 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 90 DPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 90 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..+|+|+|+|.+|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.15 E-value=0.19 Score=40.62 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=29.5
Q ss_pred CcEEEECc-CHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGG-GMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..++|+|| |..|..+|..|++.|.+|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999997 999999999999999999999875
No 481
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.14 E-value=0.14 Score=44.48 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999864
No 482
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.10 E-value=0.18 Score=42.48 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 689999999999999999999996 899999864
No 483
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.09 E-value=0.14 Score=46.10 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~ 122 (253)
.+|+|||+|-.|..+|+.|+++| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 47999999999999999999998 899999996
No 484
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.05 E-value=0.23 Score=43.65 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 123 (253)
.+|.|||+|-.|.++|+.|+..|+ ++.|+|.+.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 589999999999999999999987 899999854
No 485
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.04 E-value=0.18 Score=45.75 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 34689999999999999999999999999999764
No 486
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.03 E-value=0.19 Score=42.52 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 689999999999999999999996 899999753
No 487
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.03 E-value=0.17 Score=46.47 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|+|+|.|-+|+++|..|+++|++|+++|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999999753
No 488
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.00 E-value=0.15 Score=44.65 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=29.0
Q ss_pred cEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 92 HVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 92 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
+|+|+|+|..|...|+.|++.|..|+++=|..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 69999999999999999999998888887754
No 489
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.99 E-value=0.19 Score=43.84 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.6
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC--eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV--KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 123 (253)
.+|.|||.|..|.+.|..|.+.|. +|+++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899999863
No 490
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=92.95 E-value=0.071 Score=47.49 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=33.8
Q ss_pred CcEEEECcCHHHHHHHHHHhHc----CCeEEEEcCCCCCCCCCcccc
Q 047483 91 PHVGIIGGGMAGLACALSLDKR----GVKSTVFDTGNHGLGGRMGTR 133 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~~gg~~~~~ 133 (253)
..+-|||+|++||++|..|-+. |.++.|+|.-+ ..||.+-+.
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelp-l~GGSlDG~ 68 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELP-LAGGSLDGA 68 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCc-ccCCCCCCC
Confidence 4578999999999999999874 68999999864 467655443
No 491
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.90 E-value=0.13 Score=50.15 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHh-HcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLD-KRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~ 123 (253)
..|.|||+|..|...|..++ ..|++|+++|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999999 8899999999853
No 492
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.86 E-value=0.23 Score=38.26 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=29.7
Q ss_pred CcEEEECcCHHHHHHHHHHhHcC-CeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRG-VKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 123 (253)
.+++|||+|..|...|..|.+.| .+|++++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 57999999999999999999986 7899999863
No 493
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.81 E-value=0.21 Score=41.62 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
.+|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 689999999999999999999997 899998753
No 494
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.76 E-value=0.17 Score=46.08 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=30.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|+|||-|.+|.++|..|.++|.+|+++|...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999999753
No 495
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.74 E-value=0.2 Score=42.79 Aligned_cols=32 Identities=34% Similarity=0.325 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTG 122 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 122 (253)
..++|+|+|-+|.++|+.|++.|.+|+++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999885
No 496
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.73 E-value=0.2 Score=39.44 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
....++|+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 34679999999999999999999999999999875
No 497
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.71 E-value=0.16 Score=47.13 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
.+|.|||.|..|..+|..|+++|++|+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 498
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.12 Score=45.70 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=30.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 89 SDPHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 89 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
...||+|||||-+|..+|+.|+--=..|+++|=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 44799999999999999999987656799999754
No 499
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.64 E-value=0.15 Score=44.53 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=30.4
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCCeEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGVKSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 123 (253)
..|.|||||..|-..|+.++..|++|+++|.+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 479999999999999999999889999999863
No 500
>PRK08328 hypothetical protein; Provisional
Probab=92.61 E-value=0.23 Score=41.53 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHhHcCC-eEEEEcCCC
Q 047483 91 PHVGIIGGGMAGLACALSLDKRGV-KSTVFDTGN 123 (253)
Q Consensus 91 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 123 (253)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 689999999999999999999996 799998753
Done!