BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047486
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 175/613 (28%), Positives = 247/613 (40%), Gaps = 103/613 (16%)
Query: 133 NLTRATEIAF---ASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
+++R + F +SN+F+ +P + S L D+SGN G + T L ++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN-LTILDLSSNNLSGAIRF 248
+S N GPI L SLQ + L EN+ G IP+ + LT LDLS N+ GA+
Sbjct: 254 ISSNQFVGPIPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 311
Query: 249 DQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEEL 308
N S + + +L +R L
Sbjct: 312 ---------PFFGSCSLLESLALSSNNFSGELPMDTLLKMR-----------------GL 345
Query: 309 YLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI 368
+LDLS N G + +S L +L S + TLDL +N G I
Sbjct: 346 KVLDLSFNEFSGELPES-------LTNLSAS--------------LLTLDLSSNNFSGPI 384
Query: 369 LV-----PPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTE 423
L P + + L + NN +GKIPP GTIP LG+ S +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-K 443
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
L L L N LEG I L +L L+ N L G +P L+ C L +++ N ++
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF---QALRIIDLSHNEFTGFLPRRI 540
P W+G L L IL L +N F G NI ++L +DL+ N F G +P +
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 541 FP-SMEAMKNVDEQGRLEY-----MGGAFYDESITVAMQG-HDFQLQKI----------- 582
F S + N R Y M + + QG QL ++
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 583 --------------LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
+MF +D S N G IP+ +G+ L +LNL HN ++G+IP
Sbjct: 619 VYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 629 ENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIG 688
++ L LDLS NKLDGRIP+ N L G IP QF TF ++
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 689 NIHLCGEPLTVRC 701
N LCG PL RC
Sbjct: 737 NPGLCGYPLP-RC 748
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 162/558 (29%), Positives = 238/558 (42%), Gaps = 78/558 (13%)
Query: 41 ATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPK 100
+ N S PF L S + LD+ G ++ G+F I L++L ++ N Q G +P
Sbjct: 209 SNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP 265
Query: 101 SNWSSPLREL----------------------DLLSVLDIGFCNFTGSIPTSIGNLTRAT 138
PL+ L D L+ LD+ +F G++P G+ +
Sbjct: 266 L----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 139 EIAFASNHFTGQLP-HHVSGLSYLTTFDLSGNYFQGGVPSWLFTL-PSLLSIDLSKNMLN 196
+A +SN+F+G+LP + + L DLS N F G +P L L SLL++DLS N +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 197 GPI--DLFQLP-NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAI--RFDQF 251
GPI +L Q P N+LQ++ L+ N G IP + L L LS N LSG I
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 252 SKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYL 310
SKL+ + Y + +L+ L + ++T E P L N L
Sbjct: 442 SKLRDLKLWLNMLEGEIPQ------ELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 311 LDLSNNRIQGRISKSDSPGW----KSLIDLDLSNN-FMTHI--ELHPWMNITTLDLRNNR 363
+ LSNNR+ G I P W ++L L LSNN F +I EL ++ LDL N
Sbjct: 495 ISLSNNRLTGEI-----PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 364 IQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTE 423
G+I + + K++ G + G S +
Sbjct: 550 FNGTI------PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 424 LITLHLKN------NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477
L L +N GH TF N + LD++ N L G +P+ + L ++N+
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLSHNEFTGF 535
G N IS S P +G L L IL L SN+ G P S +T L IDLS+N +G
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM----LTEIDLSNNNLSGP 719
Query: 536 LPR----RIFPSMEAMKN 549
+P FP + + N
Sbjct: 720 IPEMGQFETFPPAKFLNN 737
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 130/526 (24%), Positives = 211/526 (40%), Gaps = 96/526 (18%)
Query: 166 LSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVR---LEEN--EIRG 220
LS ++ G V + + SL S+DLS+N L+GP+ S ++ + N + G
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 221 TIPNSTFQLVNLTILDLSSNNLSGA-----IRFDQFSKLKKXXXXXXXXXXXXXXXXXAN 275
+ + +L +L +LDLS+N++SGA + D +LK N
Sbjct: 143 KV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK-SLI 334
L+ L + N + FL + L LD+S N++ G S++ S + L+
Sbjct: 202 ---------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI-----------------------LVP 371
++ SN F+ I P ++ L L N+ G I VP
Sbjct: 253 NIS-SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 372 P-----PSTKVLLVSNNKLSGKIP-PXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELI 425
P + L +S+N SG++P G +P L N S L+
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 426 TLHLKNNSLEGHIHDTFAN--ASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
TL L +N+ G I + L+ L L +N G +P +L+ C +L +++ N +S
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 543
+ P LGSL +L+ L L N G + + + L + L N+ TG +P
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGEIP------ 483
Query: 544 MEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603
+ N + S NR GEIP+
Sbjct: 484 -SGLSNCTN---------------------------------LNWISLSNNRLTGEIPKW 509
Query: 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
+G ++L +L LS+NS +GNIP + +L LDL+ N +G IP
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 176/432 (40%), Gaps = 57/432 (13%)
Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID-LDLSNN---FMTHIELHPWMN-I 354
GF + S L LDLS N + G ++ S G S + L++S+N F + +N +
Sbjct: 95 GF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153
Query: 355 TTLDLRNNRIQGSILVP------PPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXX 408
LDL N I G+ +V K L +S NK+SG +
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSN 210
Query: 409 XXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
T P LG+ S L L + N L G + + L+ L+++SN+ GP+P K
Sbjct: 211 NFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269
Query: 469 CIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLRSNRFYGPL----------------- 510
L+ +++ +N + P +L G+ L L L N FYG +
Sbjct: 270 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 511 ------CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAF 563
+ + L+++DLS NEF+G LP E++ N+ L+ F
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-------ESLTNLSASLLTLDLSSNNF 380
Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 623
+ Q LQ++ + N F G+IP L N L L+LS N L+G
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQ-------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 624 IPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFEN 683
IP S +++ L L L N L+G IP++ +N L G IP G T N
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 684 DSYIGNIHLCGE 695
+ N L GE
Sbjct: 494 WISLSNNRLTGE 505
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 175/613 (28%), Positives = 247/613 (40%), Gaps = 103/613 (16%)
Query: 133 NLTRATEIAF---ASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
+++R + F +SN+F+ +P + S L D+SGN G + T L ++
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN-LTILDLSSNNLSGAIRF 248
+S N GPI L SLQ + L EN+ G IP+ + LT LDLS N+ GA+
Sbjct: 251 ISSNQFVGPIPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 308
Query: 249 DQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEEL 308
N S + + +L +R L
Sbjct: 309 ---------PFFGSCSLLESLALSSNNFSGELPMDTLLKMR-----------------GL 342
Query: 309 YLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI 368
+LDLS N G + +S L +L S + TLDL +N G I
Sbjct: 343 KVLDLSFNEFSGELPES-------LTNLSAS--------------LLTLDLSSNNFSGPI 381
Query: 369 LV-----PPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTE 423
L P + + L + NN +GKIPP GTIP LG+ S +
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-K 440
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
L L L N LEG I L +L L+ N L G +P L+ C L +++ N ++
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF---QALRIIDLSHNEFTGFLPRRI 540
P W+G L L IL L +N F G NI ++L +DL+ N F G +P +
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 541 FP-SMEAMKNVDEQGRLEY-----MGGAFYDESITVAMQG-HDFQLQKI----------- 582
F S + N R Y M + + QG QL ++
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 583 --------------LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
+MF +D S N G IP+ +G+ L +LNL HN ++G+IP
Sbjct: 616 VYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 629 ENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIG 688
++ L LDLS NKLDGRIP+ N L G IP QF TF ++
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 689 NIHLCGEPLTVRC 701
N LCG PL RC
Sbjct: 734 NPGLCGYPLP-RC 745
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 162/558 (29%), Positives = 238/558 (42%), Gaps = 78/558 (13%)
Query: 41 ATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPK 100
+ N S PF L S + LD+ G ++ G+F I L++L ++ N Q G +P
Sbjct: 206 SNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP 262
Query: 101 SNWSSPLREL----------------------DLLSVLDIGFCNFTGSIPTSIGNLTRAT 138
PL+ L D L+ LD+ +F G++P G+ +
Sbjct: 263 L----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 139 EIAFASNHFTGQLPHH-VSGLSYLTTFDLSGNYFQGGVPSWLFTL-PSLLSIDLSKNMLN 196
+A +SN+F+G+LP + + L DLS N F G +P L L SLL++DLS N +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 197 GPI--DLFQLP-NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAI--RFDQF 251
GPI +L Q P N+LQ++ L+ N G IP + L L LS N LSG I
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 252 SKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYL 310
SKL+ + Y + +L+ L + ++T E P L N L
Sbjct: 439 SKLRDLKLWLNMLEGEIPQ------ELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 311 LDLSNNRIQGRISKSDSPGW----KSLIDLDLSNN-FMTHI--ELHPWMNITTLDLRNNR 363
+ LSNNR+ G I P W ++L L LSNN F +I EL ++ LDL N
Sbjct: 492 ISLSNNRLTGEI-----PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 364 IQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTE 423
G+I + + K++ G + G S +
Sbjct: 547 FNGTI------PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 424 LITLHLKN------NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477
L L +N GH TF N + LD++ N L G +P+ + L ++N+
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLSHNEFTGF 535
G N IS S P +G L L IL L SN+ G P S +T L IDLS+N +G
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM----LTEIDLSNNNLSGP 716
Query: 536 LPR----RIFPSMEAMKN 549
+P FP + + N
Sbjct: 717 IPEMGQFETFPPAKFLNN 734
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 130/526 (24%), Positives = 211/526 (40%), Gaps = 96/526 (18%)
Query: 166 LSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVR---LEEN--EIRG 220
LS ++ G V + + SL S+DLS+N L+GP+ S ++ + N + G
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 221 TIPNSTFQLVNLTILDLSSNNLSGA-----IRFDQFSKLKKXXXXXXXXXXXXXXXXXAN 275
+ + +L +L +LDLS+N++SGA + D +LK N
Sbjct: 140 KV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK-SLI 334
L+ L + N + FL + L LD+S N++ G S++ S + L+
Sbjct: 199 ---------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI-----------------------LVP 371
++ SN F+ I P ++ L L N+ G I VP
Sbjct: 250 NIS-SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 372 P-----PSTKVLLVSNNKLSGKIP-PXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELI 425
P + L +S+N SG++P G +P L N S L+
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 426 TLHLKNNSLEGHIHDTFAN--ASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
TL L +N+ G I + L+ L L +N G +P +L+ C +L +++ N +S
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 543
+ P LGSL +L+ L L N G + + + L + L N+ TG +P
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGEIP------ 480
Query: 544 MEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603
+ N + S NR GEIP+
Sbjct: 481 -SGLSNCTN---------------------------------LNWISLSNNRLTGEIPKW 506
Query: 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
+G ++L +L LS+NS +GNIP + +L LDL+ N +G IP
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 176/432 (40%), Gaps = 57/432 (13%)
Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID-LDLSNN---FMTHIELHPWMN-I 354
GF + S L LDLS N + G ++ S G S + L++S+N F + +N +
Sbjct: 92 GF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 150
Query: 355 TTLDLRNNRIQGSILVP------PPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXX 408
LDL N I G+ +V K L +S NK+SG +
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSN 207
Query: 409 XXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
T P LG+ S L L + N L G + + L+ L+++SN+ GP+P K
Sbjct: 208 NFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 266
Query: 469 CIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLRSNRFYGPL----------------- 510
L+ +++ +N + P +L G+ L L L N FYG +
Sbjct: 267 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 511 ------CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAF 563
+ + L+++DLS NEF+G LP E++ N+ L+ F
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-------ESLTNLSASLLTLDLSSNNF 377
Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 623
+ Q LQ++ + N F G+IP L N L L+LS N L+G
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQ-------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 624 IPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFEN 683
IP S +++ L L L N L+G IP++ +N L G IP G T N
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 684 DSYIGNIHLCGE 695
+ N L GE
Sbjct: 491 WISLSNNRLTGE 502
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 125/310 (40%), Gaps = 47/310 (15%)
Query: 417 LGN---FSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGP--LPRSLAKCIK 471
LGN S+ L T N + G + DT + +LDL+ L P +P SLA
Sbjct: 18 LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77
Query: 472 LEVVNVGK-NMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHN 530
L + +G N + P + L +L L + G + + + L +D S+N
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYN 135
Query: 531 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD 590
+G LP PS+ ++ N+ +G F I+ A+ K +F +M
Sbjct: 136 ALSGTLP----PSISSLPNL--------VGITFDGNRISGAIPDSYGSFSK---LFTSMT 180
Query: 591 FSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF------------ENMTA----- 633
SRNR G+IP N +L ++LS N L G+ V F +N A
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 634 ------LESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYI 687
L LDL N++ G +P+ +N L G IP+G F+ +Y
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 688 GNIHLCGEPL 697
N LCG PL
Sbjct: 300 NNKCLCGSPL 309
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 41/234 (17%)
Query: 49 PFSLLNLSSTMTDLDLGG-TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL 107
P SL NL + L +GG + G P I +L L L++ ++ ++G +P L
Sbjct: 69 PSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDF-----L 121
Query: 108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYL-TTFDL 166
++ L LD + +G++P SI +L I F N +G +P S L T+ +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 167 SGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLF------------------------ 202
S N G +P L +L +DLS+NML G +
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 203 QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAI-------RFD 249
L +L + L N I GT+P QL L L++S NNL G I RFD
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Query: 381 SNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHD 440
S N LSG +PP G IP G+FS ++ + N L G I
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILV 500
TFAN +L +DL+ N LEG + +++ KN ++ +G L L
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 501 LRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPR 538
LR+NR YG L F L +++S N G +P+
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIPQ 286
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 26/251 (10%)
Query: 278 IKYSLPSLKVLRFAYCN-----ITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKS 332
I SL +L L F Y + P + +L+ L +++ + G I S K+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKT 126
Query: 333 LIDLDLSNNFMTHI---ELHPWMNITTLDLRNNRIQGSILVPPPST-------KVLLVSN 382
L+ LD S N ++ + N+ + NRI G+I P S + +S
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI---PDSYGSFSKLFTSMTISR 183
Query: 383 NKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTF 442
N+L+GKIPP + +T+ I HL NSL +
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI--HLAKNSLAFDLGKV- 240
Query: 443 ANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLR 502
+ +L LDL +N++ G LP+ L + L +NV N + P G+L +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299
Query: 503 SNRFYGPLCNS 513
+N+ LC S
Sbjct: 300 NNKC---LCGS 307
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
L+ L LK N L G + F ASH++ L L NK++ + +L+ +N+ N IS
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 540
P L+ L L L SN F CN ++ + + LR L+ P ++
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFN---CNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 442 FANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD-SFPCWLGSLHELKILV 500
F HL L+L N+L G P + ++ + +G+N I + S +LG LH+LK L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG-LHQLKTLN 108
Query: 501 LRSNRF 506
L N+
Sbjct: 109 LYDNQI 114
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 610 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
LK LNL N ++ +P SFE++ +L SL+L+ N
Sbjct: 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 131 IGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG+L E+ A N +LP + S L+ L DLS N Q + L L + ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEE-----NEIRGTIPNSTF-QLVNLTILDLSSNNLS 243
LS ++ P++ Q P + +++RL+E N+++ ++P+ F +L +L + L +N
Sbjct: 180 LSLDLSLNPMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237
Query: 244 GAI-RFDQFSK 253
+ R D S+
Sbjct: 238 CSCPRIDYLSR 248
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 131 IGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG+L E+ A N +LP + S L+ L DLS N Q + L L + ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEE-----NEIRGTIPNSTF-QLVNLTILDLSSNNLS 243
LS ++ P++ Q P + +++RL+E N+++ ++P+ F +L +L + L +N
Sbjct: 182 LSLDLSLNPMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 239
Query: 244 GAI-RFDQFSK 253
+ R D S+
Sbjct: 240 CSCPRIDYLSR 250
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 131 IGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG+L E+ A N +LP + S L+ L DLS N Q + L L + ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEE-----NEIRGTIPNSTF-QLVNLTILDLSSNNLS 243
LS ++ P++ Q P + +++RL+E N+++ ++P+ F +L +L + L +N
Sbjct: 181 LSLDLSLNPMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 238
Query: 244 GAI-RFDQFSK 253
+ R D S+
Sbjct: 239 CSCPRIDYLSR 249
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 131 IGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG+L E+ A N +LP + S L+ L DLS N Q + L L + ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEE-----NEIRGTIPNSTF-QLVNLTILDLSSNNLS 243
LS ++ P++ Q P + +++RL+E N+++ ++P+ F +L +L + L +N
Sbjct: 181 LSLDLSLNPMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 238
Query: 244 GAI-RFDQFSK 253
+ R D S+
Sbjct: 239 CSCPRIDYLSR 249
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 131 IGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG+L E+ A N +LP + S L+ L DLS N Q + L L + ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEE-----NEIRGTIPNSTF-QLVNLTILDLSSNNLS 243
LS ++ P++ Q P + +++RL+E N+++ ++P+ F +L +L + L +N
Sbjct: 182 LSLDLSLNPMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 239
Query: 244 GAI-RFDQFSK 253
+ R D S+
Sbjct: 240 CSCPRIDYLSR 250
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 23/210 (10%)
Query: 449 RSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG 508
R L+L N ++ + LE++ + KN++ L L L L NR
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL-- 95
Query: 509 PLCNSNITFPFQA------LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD--EQGRLEYMG 560
T P QA LR + L +N +P F + +++ +D E RLEY+
Sbjct: 96 ------TTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 561 GAFYDESITVAMQG------HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLN 614
A ++ + + D LV ++ S NR P SL+ L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 615 LSHNSLTGNIPVSFENMTALESLDLSFNKL 644
L H + +F+++ +LE L+LS N L
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 23/210 (10%)
Query: 449 RSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG 508
R L+L N ++ + LE++ + KN++ L L L L NR
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL-- 95
Query: 509 PLCNSNITFPFQA------LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD--EQGRLEYMG 560
T P QA LR + L +N +P F + +++ +D E RLEY+
Sbjct: 96 ------TTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 561 GAFYDESITVAMQG------HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLN 614
A ++ + + D LV ++ S NR P SL+ L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 615 LSHNSLTGNIPVSFENMTALESLDLSFNKL 644
L H + +F+++ +LE L+LS N L
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 13/207 (6%)
Query: 448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY 507
L+ L SNK G S LE +++ +N +S C + + L + F
Sbjct: 351 LKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS-FN 407
Query: 508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGGAFY 564
G + S+ + L +D H+ +F S+ + +D R+ + G
Sbjct: 408 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467
Query: 565 DESITV-AMQGHDFQ---LQKILVMFRAM---DFSRNRFHGEIPEVLGNFKSLKVLNLSH 617
S+ V M G+ FQ L I R + D S+ + P + SL+VLN+SH
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 618 NSLTGNIPVSFENMTALESLDLSFNKL 644
N+ ++ + +L+ LD S N +
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 131 IGNLTRATEIAFASNHF-TGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG L ++ A N + +LP + S L+ L DLS NY Q + L L ++
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 178
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNS 225
LS +M PID Q + Q ++L E +RG +S
Sbjct: 179 LSLDMSLNPIDFIQ-DQAFQGIKLHELTLRGNFNSS 213
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 17/210 (8%)
Query: 448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSL--HELKILVLRSNR 505
L+SL L NK G + L +++ +N +S S C L + L+ L L
Sbjct: 325 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS--- 379
Query: 506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGGA 562
F G + S + L+ +D H+ F S+E + +D ++++ G
Sbjct: 380 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 439
Query: 563 FYDESI-TVAMQGHDFQLQKILVMFRA------MDFSRNRFHGEIPEVLGNFKSLKVLNL 615
S+ T+ M G+ F+ + +F +D S+ + V L++LN+
Sbjct: 440 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 499
Query: 616 SHNSLTGNIPVSFENMTALESLDLSFNKLD 645
SHN+L + + +L +LD SFN+++
Sbjct: 500 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 604 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKL 644
+G +LK LN++HN + + +P F N+T L +DLS+N +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 646
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 569 TVAMQGHDFQ---LQKILVMFRAM---DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG 622
+ M G+ FQ L I R + D S+ + P + SL+VLN+SHN+
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 623 NIPVSFENMTALESLDLSFNKL 644
++ + +L+ LD S N +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHI 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 604 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKL 644
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 131 IGNLTRATEIAFASNHF-TGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
IG L ++ A N + +LP + S L+ L DLS NY Q + L L ++
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNS 225
LS +M PID Q + Q ++L E +RG +S
Sbjct: 184 LSLDMSLNPIDFIQ-DQAFQGIKLHELTLRGNFNSS 218
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 17/210 (8%)
Query: 448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSL--HELKILVLRSNR 505
L+SL L NK G + L +++ +N +S S C L + L+ L L
Sbjct: 330 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS--- 384
Query: 506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGGA 562
F G + S + L+ +D H+ F S+E + +D ++++ G
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 563 FYDESI-TVAMQGHDFQLQKILVMFRA------MDFSRNRFHGEIPEVLGNFKSLKVLNL 615
S+ T+ M G+ F+ + +F +D S+ + V L++LN+
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
Query: 616 SHNSLTGNIPVSFENMTALESLDLSFNKLD 645
SHN+L + + +L +LD SFN+++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 604 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFNKL 644
+G +LK LN++HN + + +P F N+T L +DLS+N +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 600 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
+P+ L N+K L +++LS+N ++ SF NMT L +L LS+N+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 54 NLSSTMTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112
N+ + LDL ++ + P F RL L++L+LN N T LP + L+ L+
Sbjct: 34 NIPADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKE-LKNLET 89
Query: 113 LSVLDIGFCNFTGSIPTSI-GNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF 171
L V D N ++P + L E+ N P L+ LT L N
Sbjct: 90 LWVTD----NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 172 QGGVPSWLF-TLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ- 228
Q +P +F L SL + L N L P F L+ ++L+ N+++ +P F
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDS 203
Query: 229 LVNLTILDLSSN 240
L L +L L N
Sbjct: 204 LEKLKMLQLQEN 215
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
LV + RN+ P V + L L+L +N L F+ +T+L+ L L N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 643 KLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFE 682
+L R+PE N R+P G F++ E
Sbjct: 168 QLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEG-AFDSLE 205
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
L L+L NSL + N S+LR LDL+ N+L LP L C +L+ NM++
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 484 DSFPCWLGSLHELKILVLRSN 504
+ P G+L L+ L + N
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGN 326
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 551 DEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDF-SRNRFHG----EIPEVLG 605
D + R+ + YD+ + A+ + Q+ I DF +R +G E+P +
Sbjct: 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK 267
Query: 606 NFKSLKVLNLSHNSLTG 622
N +L+VL+LSHN LT
Sbjct: 268 NLSNLRVLDLSHNRLTS 284
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENE 217
L L T L N P L L + LSKN L + ++P +LQ++R+ ENE
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENE 132
Query: 218 IRGTIPNSTFQLVN-LTILDLSSNNL-SGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXAN 275
I + S F +N + +++L +N L S I F +KK
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK------------------- 172
Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID 335
L +R A NIT P L S L L L N+I ++ + G +L
Sbjct: 173 ---------LSYIRIADTNITTIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAK 220
Query: 336 LDLSNNFMTHIELHPWMN---ITTLDLRNNRI 364
L LS N ++ ++ N + L L NN++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 427 LHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS--- 483
L L+NN + F N +L +L L +NK+ P + A +KLE + + KN +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 484 DSFPCWLGSL--HELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 541
+ P L L HE +I +R + F G + +++L N
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNG----------LNQMIVVELGTNPLKS------- 159
Query: 542 PSMEAMKNVDEQG--RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE 599
++N QG +L Y+ A D +IT QG L + + N+
Sbjct: 160 ---SGIENGAFQGMKKLSYIRIA--DTNITTIPQGLPPSLTE-------LHLDGNKITKV 207
Query: 600 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
L +L L LS NS++ S N L L L+ NKL
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
L L L NS+ + + AN HLR L LN+NKL +P LA ++VV + N IS
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENE 217
L L T L N P L L + LSKN L + ++P +LQ++R+ ENE
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENE 132
Query: 218 IRGTIPNSTFQLVN-LTILDLSSNNL-SGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXAN 275
I + S F +N + +++L +N L S I F +KK
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK------------------- 172
Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID 335
L +R A NIT P L S L L L N+I ++ + G +L
Sbjct: 173 ---------LSYIRIADTNITTIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAK 220
Query: 336 LDLSNNFMTHIELHPWMN---ITTLDLRNNRI 364
L LS N ++ ++ N + L L NN++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 427 LHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS--- 483
L L+NN + F N +L +L L +NK+ P + A +KLE + + KN +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 484 DSFPCWLGSL--HELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 541
+ P L L HE +I +R + F G + +++L N
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNG----------LNQMIVVELGTNPLKS------- 159
Query: 542 PSMEAMKNVDEQG--RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE 599
++N QG +L Y+ A D +IT QG L + + N+
Sbjct: 160 ---SGIENGAFQGMKKLSYIRIA--DTNITTIPQGLPPSLTE-------LHLDGNKITKV 207
Query: 600 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
L +L L LS NS++ S N L L L+ NKL
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
L L L NS+ + + AN HLR L LN+NKL +P LA ++VV + N IS
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 27/197 (13%)
Query: 67 TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGS 126
T IK FPDD F + L K + + + + +L S+ I N
Sbjct: 7 TPIKQIFPDDAFA------------ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIK 54
Query: 127 IPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFD---LSGNYFQGGVPSWLF-TL 182
I L +A N H +S L LT L+GN Q +P+ +F L
Sbjct: 55 SVQGIQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQS-LPNGVFDKL 108
Query: 183 PSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSN 240
+L + L +N L P +F +L + L N+++ ++P F +L NLT LDLS N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167
Query: 241 NLSGAIR--FDQFSKLK 255
L FD+ ++LK
Sbjct: 168 QLQSLPEGVFDKLTQLK 184
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
L + + N+ V +L LNL+HN L F+ +T L LDLS+N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 643 KLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRC 701
+L +PE Y +P G F+ + + I L P C
Sbjct: 168 QLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDCTC 221
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 67/273 (24%)
Query: 281 SLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS 339
++P L VL +++ P G N+ +L L +SNN ++ RI SL +L LS
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173
Query: 340 NNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXX 399
+N +TH++L ++ ++ N + S L P + + L S+N
Sbjct: 174 SNRLTHVDLSLIPSLFHANVSYNLL--STLAIPIAVEELDASHN---------------- 215
Query: 400 XXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDT--FANASHLRSLDLNSNK 457
+I G + EL L L++N+L DT N L +DL+ N+
Sbjct: 216 ------------SINVVRGPVNVELTILKLQHNNLT----DTAWLLNYPGLVEVDLSYNE 259
Query: 458 LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF 517
LE + K +LE + + N +++ L YG
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNN----------------RLVAL---NLYGQ-------- 292
Query: 518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
P L+++DLSHN R P + ++N+
Sbjct: 293 PIPTLKVLDLSHNHLLHV--ERNQPQFDRLENL 323
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 46/252 (18%)
Query: 411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCI 470
++P + + + +L TL + NN+LE DTF + L++L L+SN+L L+
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 186
Query: 471 KLEVVNVGKNMISD-SFPCWLGSLH---------------ELKILVLRSNRFYGPLCNSN 514
L NV N++S + P + L EL IL L+ N L ++
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN----LTDTA 242
Query: 515 ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQG 574
+ L +DLS+NE + F M+ ++ + Y+ + + + + G
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERL-------YISN---NRLVALNLYG 291
Query: 575 HDFQLQKILVMFRAMDFSRNR-FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
K+L D S N H E + F L+ L L HNS+ + +
Sbjct: 292 QPIPTLKVL------DLSHNHLLHVERNQ--PQFDRLENLYLDHNSI---VTLKLSTHHT 340
Query: 634 LESLDLSFNKLD 645
L++L LS N D
Sbjct: 341 LKNLTLSHNDWD 352
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 45 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 103
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 104 TVLDVSFNRL 113
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 56 TRLTQLNLDRCELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 111
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++NNL+
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEEN 216
L L T DLS N Q +P TLP+L +D+S N L P+ + LQ++ L+ N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLS 243
E++ P L L L++N L+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 55 TRLTQLNLDRCELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++NNL+
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 67/273 (24%)
Query: 281 SLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS 339
++P L VL +++ P G N+ +L L +SNN ++ RI SL +L LS
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179
Query: 340 NNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXX 399
+N +TH++L ++ ++ N + S L P + + L S+N
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLL--STLAIPIAVEELDASHN---------------- 221
Query: 400 XXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDT--FANASHLRSLDLNSNK 457
+I G + EL L L++N+L DT N L +DL+ N+
Sbjct: 222 ------------SINVVRGPVNVELTILKLQHNNLT----DTAWLLNYPGLVEVDLSYNE 265
Query: 458 LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF 517
LE + K +LE + + N +++ L YG
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNN----------------RLVAL---NLYGQ-------- 298
Query: 518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
P L+++DLSHN R P + ++N+
Sbjct: 299 PIPTLKVLDLSHNHLLHV--ERNQPQFDRLENL 329
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEEN 216
L L T DLS N Q +P TLP+L +D+S N L P+ + LQ++ L+ N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLS 243
E++ P L L L++N L+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEEN 216
L L T DLS N Q +P TLP+L +D+S N L P+ + LQ++ L+ N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLS 243
E++ P L L L++N L+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 55 TRLTQLNLDRCELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++N+L+
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 55 TRLTQLNLDRCELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++N L+
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 17/207 (8%)
Query: 451 LDLNSNKLEGPLPRSL-AKCIKLEVVNVGKNMISDSFPCWLGSL--HELKILVLRSNRFY 507
L+L SNKL+ LP + K +L +++ N +S C LK L L F
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FN 88
Query: 508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGGAFY 564
G + S+ + L +D H+ +F S+ + +D R+ + G
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 565 DESITV-AMQGHDFQ---LQKILVMFRAM---DFSRNRFHGEIPEVLGNFKSLKVLNLSH 617
S+ V M G+ FQ L I R + D S+ + P + SL+VLN+SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 618 NSLTGNIPVSFENMTALESLDLSFNKL 644
N+ ++ + +L+ LD S N +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 55 TRLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++NNL+
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 55 TRLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++NNL+
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
+ F L ++ R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 635 ESLDLSFNKL 644
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 TRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193
TR T++ T V G L L T DLS N Q +P TLP+L +D+S N
Sbjct: 55 TRLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 194 MLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
L P+ + LQ++ L+ NE++ P L L L++NNL+
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 27/199 (13%)
Query: 66 GTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG 125
T IK FPDD F + L K + + + + +L S+ I N
Sbjct: 6 STPIKQIFPDDAFA------------ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDI 53
Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFD---LSGNYFQGGVPSWLF-T 181
I L +A N H +S L LT L+GN Q +P+ +F
Sbjct: 54 KSVQGIQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQS-LPNGVFDK 107
Query: 182 LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSS 239
L +L + L +N L P +F +L + L N+++ ++P F +L NLT LDL +
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDN 166
Query: 240 NNLSGAIR--FDQFSKLKK 256
N L FD+ ++LK+
Sbjct: 167 NQLQSLPEGVFDKLTQLKQ 185
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH-IELHPWMNITTLDLRNNRIQGSIL 369
LDLS N + +IS +D + L L+LS+N + ++L + TLDL NN +Q L
Sbjct: 39 LDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--L 95
Query: 370 VPPPSTKVLLVSNNKLS 386
+ PS + L +NN +S
Sbjct: 96 LVGPSIETLHAANNNIS 112
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF--ENMTALESLDLSFNK 643
F ++F++N F + + K L+ L L N L V+ +NM++LE+LD+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 644 LDG 646
L+
Sbjct: 415 LNS 417
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645
R + S NR V + L+ L++SHN L +S M +L LDLSFN D
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD 134
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 21/216 (9%)
Query: 442 FANASHLRSLDLNSNKLEG-PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILV 500
F N L LDL+ N++ L S K L+ ++ N I +L HEL+ L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI------FLVCEHELEPLQ 172
Query: 501 LRSNRFYGPLCNS----------NITFPFQ--ALRIIDLSHNEFTGFLPRRIFPSMEAMK 548
++ F+ NS PF+ L I+D+S N +T + ++ +
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 549 NVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFK 608
MG F +I Q L + V R +D S V K
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV--RHLDLSHGFVFSLNSRVFETLK 290
Query: 609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
LKVLNL++N + +F + L+ L+LS+N L
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 96/414 (23%), Positives = 156/414 (37%), Gaps = 80/414 (19%)
Query: 106 PLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV--SGLSYLTT 163
P R + +L +LD+ +T I GN + A S F+ L HH+ +G +
Sbjct: 200 PFRNM-VLEILDVSGNGWTVDIT---GNFSNAIS---KSQAFSLILAHHIMGAGFGFHNI 252
Query: 164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNM---LNGPIDLFQLPNSLQDVRLEENEIRG 220
D N F G S S+ +DLS LN + F+ L+ + L N+I
Sbjct: 253 KDPDQNTFAGLARS------SVRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAYNKINK 304
Query: 221 TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXANISIKY 280
+ + L NL +L+LS N L G + F Y
Sbjct: 305 IADEAFYGLDNLQVLNLSYN-LLGELYSSNF----------------------------Y 335
Query: 281 SLPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS 339
LP + + +I + E+L LDL +N + + S+ D+ LS
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLS 389
Query: 340 NNFMTHIELHPWMNITT--LDLRNNRIQG----SILVPPPSTKVLLVSNNKLS---GKIP 390
N + + P +N+T + L NR++ L+ P ++L+++ N+ S G
Sbjct: 390 GNKLVTL---PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
Query: 391 PXXXXXXXXXXXXXXXXXXXGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHL 448
P C F + L L+L +N L F++ + L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 449 RSLDLNSNKL----EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKI 498
R L LNSN+L LP + LE++++ +N + P SL L I
Sbjct: 507 RGLSLNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNPDVFVSLSVLDI 554
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS----DSFPCWLGSLHE 495
D F SHL+ L LN N L P + L +++ N ++ + P
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------N 527
Query: 496 LKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532
L+IL + N+ P N ++ F +L ++D++HN+F
Sbjct: 528 LEILDISRNQLLAP--NPDV---FVSLSVLDITHNKF 559
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
+V L+VL L+HN L P F ++TAL L L+ N+L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH-IELHPWMNITTLDLRNNRIQGSIL 369
LDLS N + +IS +D + L L+LS+N + ++L + TLDL NN +Q L
Sbjct: 39 LDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--L 95
Query: 370 VPPPSTKVLLVSNNKLS 386
+ PS + L +NN +S
Sbjct: 96 LVGPSIETLHAANNNIS 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 462 LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF-YGPLCNSNITFPF- 519
+P+ L++ K ++N+ +N IS+ + + SL +L+IL++ NR Y + F F
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS----VFKFN 68
Query: 520 QALRIIDLSHNEFT 533
Q L +DLSHN+
Sbjct: 69 QELEYLDLSHNKLV 82
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
L R + S NR V + L+ L+LSHN L + +S L+ LDLSFN
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFN 100
Query: 643 KLDG 646
D
Sbjct: 101 AFDA 104
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 586 FRAMDFSRNRFHGE--IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
+ +D S N L N L+ LNLSHN G +F+ LE LDL+F +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 644 LDGRIPE 650
L P+
Sbjct: 409 LHINAPQ 415
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQLV-NLTILDLSSNNLSG--AIRFDQFSKLKKXXXX 260
+P S Q + L N I +P ++FQ NLTIL L SN L+G A F + L++
Sbjct: 29 IPASSQRIFLHGNRI-SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQ---- 83
Query: 261 XXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNITEF-PGFLRNSEELYLLDLSNNRIQ 319
+ + L L L C + E PG R L L L +N +Q
Sbjct: 84 --LDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLD 358
+ + +L L L N + + H + + +LD
Sbjct: 142 A-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 105/260 (40%), Gaps = 42/260 (16%)
Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTL---D 358
L+N L L+LS+N I + S G SL L S+N +T +L P N+TTL D
Sbjct: 125 LKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFSSNQVT--DLKPLANLTTLERLD 179
Query: 359 LRNNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCL 417
+ +N++ S+L + + L+ +NN++S P GT+
Sbjct: 180 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL- 238
Query: 418 GNFSTELITLHLKNNS------LEGHIHDT--------------FANASHLRSLDLNSNK 457
T L L L NN L G T A + L +L+LN N+
Sbjct: 239 ----TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 294
Query: 458 LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF 517
LE P S K L + + N ISD P SL +L+ L +N+ +N+T
Sbjct: 295 LEDISPISNLK--NLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDVSSLANLT- 349
Query: 518 PFQALRIIDLSHNEFTGFLP 537
+ + HN+ + P
Sbjct: 350 ---NINWLSAGHNQISDLTP 366
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query: 106 PLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFD 165
PL+ L L+ L++ N I +++ LT +++F+SN T P ++ L+ L D
Sbjct: 124 PLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 166 LSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR--GTIP 223
+S N S L L +L S+ + N ++ L L N L ++ L N+++ GT+
Sbjct: 180 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLKDIGTLA 236
Query: 224 NSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
L NLT LDL++N +S +KL +
Sbjct: 237 ----SLTNLTDLDLANNQISNLAPLSGLTKLTE 265
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 420 FSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK 479
S + L L+NN + D F HL +L L +NK+ ++ + KL+ + + K
Sbjct: 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111
Query: 480 NMISDSFPCWLGSLHELKI 498
N + + P SL EL+I
Sbjct: 112 NHLVEIPPNLPSSLVELRI 130
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 15/183 (8%)
Query: 57 STMTDLDLGGTRIKGNFPDDIFRL---PNLQILFLNLNSQLTGYLPKSNWSSPLR----- 108
+++T LDL G K + F +Q L L+ + + +N+ P
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 109 -ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS 167
E + D+ + + + T ++ A N + GL++L +LS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 168 GNYFQGGVPSWLF-TLPSLLSIDLSKNMLN--GPIDLFQLPNSLQDVRLEENEIRGTIPN 224
N F G + S +F L L +DLS N + G LPN L+++ L+ N+++ ++P+
Sbjct: 332 QN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN-LKELALDTNQLK-SVPD 388
Query: 225 STF 227
F
Sbjct: 389 GIF 391
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID---LFQLPN-SLQDVR 212
G S L DLS N + P T+ L ++ L+ LN + ++L N S+Q++
Sbjct: 169 GNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLS 228
Query: 213 LEENEIRGTIPNSTF---QLVNLTILDLSSNNL 242
L N++ T STF + NLT LDLS NNL
Sbjct: 229 LANNQLLAT-SESTFSGLKWTNLTQLDLSYNNL 260
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query: 106 PLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFD 165
PL+ L L+ L++ N I +++ LT +++F+SN T P ++ L+ L D
Sbjct: 124 PLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 166 LSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR--GTIP 223
+S N S L L +L S+ + N ++ L L N L ++ L N+++ GT+
Sbjct: 180 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLKDIGTLA 236
Query: 224 NSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
L NLT LDL++N +S +KL +
Sbjct: 237 ----SLTNLTDLDLANNQISNLAPLSGLTKLTE 265
>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9
Signalosome Subunit 7 (Csn7)
Length = 169
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 58 TMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLD 117
T D TR+ PD I +L L +L L ++++ Y + + ELD+ +V +
Sbjct: 73 TWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPY------DTLMVELDVSNVRE 126
Query: 118 -----IGFCNFTGSIPTSIGNLTRATEIAFASNH 146
I C + G + + L R E+ FA+
Sbjct: 127 LEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 161 LTTFDLSGNYFQG--GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEI 218
L T LS N+ + L TL +L S+D+S+N + D Q P ++ + L I
Sbjct: 389 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 448
Query: 219 R---GTIPNSTFQLVNLTILDLSSNNL 242
R IP + L +LD+S+NNL
Sbjct: 449 RVVKTCIPQT------LEVLDVSNNNL 469
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 161 LTTFDLSGNYFQG--GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEI 218
L T LS N+ + L TL +L S+D+S+N + D Q P ++ + L I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422
Query: 219 R---GTIPNSTFQLVNLTILDLSSNNL 242
R IP + L +LD+S+NNL
Sbjct: 423 RVVKTCIPQT------LEVLDVSNNNL 443
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 38/194 (19%)
Query: 489 WLGSLHELKILVLRSNRFYGPLCNSNI-TFPFQALRIIDLSHNEFTGF------------ 535
WLG+ + L S F G LC+ ++ + Q R DLS + F F
Sbjct: 230 WLGTFEDTDDQYLTSATFEG-LCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAH 288
Query: 536 ---LPRRIFPSMEAMK----NVDEQGRLEYMGGAFYDESITVAMQGHDFQLQ------KI 582
LP I M ++K N + +L + A + + ++G+ +L +
Sbjct: 289 LNGLPSGI-EGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 583 LVMFRAMDFSRNRFHGEIPEV------LGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 636
L + +D S H +I L N + L+ LNLS+N G +F+ LE
Sbjct: 348 LENLQKLDLS----HSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 637 LDLSFNKLDGRIPE 650
LD++F L + P
Sbjct: 404 LDVAFTHLHVKAPH 417
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 45/209 (21%)
Query: 442 FANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL 501
N HL+ L+L+ N+ G ++ +C +LE+++V + P
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP-------------- 416
Query: 502 RSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGG 561
+ P N LR+++LSH + + ++ +++++ QG
Sbjct: 417 -----HSPFQN------LHLLRVLNLSHC-LLDTSNQHLLAGLQDLRHLNLQG------N 458
Query: 562 AFYDESITVAMQGHDFQLQKILVMFRA--MDFSRNRFHGEIPEVLGNFKSLKVLNLSHNS 619
+F D SI+ +IL++ + + FHG +++ L+LSHNS
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNS 510
Query: 620 LTGNIPVSFENMTALESLDLSFNKLDGRI 648
LTG+ S + ++ L+ L L+ + RI
Sbjct: 511 LTGD---SMDALSHLKGLYLNMASNNIRI 536
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 91/220 (41%), Gaps = 30/220 (13%)
Query: 59 MTDLD-------LGGTRIKGNFPDDIFRLPNLQILF-LNLNSQLTGYLPKSNWSSPLREL 110
+TD+D L + N DI L L L LN +Q+T P +N ++ L L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT-LERL 177
Query: 111 DLLS--VLDIG----FCNFTGSIPTS--------IGNLTRATEIAFASNHFTGQLPHHVS 156
D+ S V DI N I T+ +G LT E++ N ++
Sbjct: 178 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLA 235
Query: 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN 216
L+ LT DL+ N P L L L + L N ++ L L +L ++ L EN
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNEN 292
Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
++ P S + NLT L L NN+S +KL++
Sbjct: 293 QLEDISPISNLK--NLTYLTLYFNNISDISPVSSLTKLQR 330
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 91/220 (41%), Gaps = 30/220 (13%)
Query: 59 MTDLD-------LGGTRIKGNFPDDIFRLPNLQILF-LNLNSQLTGYLPKSNWSSPLREL 110
+TD+D L + N DI L L L LN +Q+T P +N ++ L L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT-LERL 177
Query: 111 DLLS--VLDIG----FCNFTGSIPTS--------IGNLTRATEIAFASNHFTGQLPHHVS 156
D+ S V DI N I T+ +G LT E++ N ++
Sbjct: 178 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLA 235
Query: 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN 216
L+ LT DL+ N P L L L + L N ++ L L +L ++ L EN
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNEN 292
Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
++ P S + NLT L L NN+S +KL++
Sbjct: 293 QLEDISPISNLK--NLTYLTLYFNNISDISPVSSLTKLQR 330
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 522 LRIIDLSHNEFTGFLPRR-------IFPSMEAMKNVDEQGRLEYMGG-AFYDESITVAMQ 573
L I+ S+N+ T P + I + + ++ L + G ++ IT
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT---- 120
Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
D K L ++ S N L SL+ LN S N +T P++ N+T
Sbjct: 121 --DIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLA--NLTT 174
Query: 634 LESLDLSFNKL 644
LE LD+S NK+
Sbjct: 175 LERLDISSNKV 185
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 106 PLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFD 165
PL+ L L+ L++ N I +++ LT ++ F+SN T P ++ L+ L D
Sbjct: 124 PLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLD 179
Query: 166 LSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR--GTIP 223
+S N S L L +L S+ + N ++ L L N L ++ L N+++ GT+
Sbjct: 180 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLKDIGTLA 236
Query: 224 NSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
L NLT LDL++N +S +KL +
Sbjct: 237 ----SLTNLTDLDLANNQISNLAPLSGLTKLTE 265
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 694 GEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVI 739
GEP+T++C DG PE +H + S +KM + LVI
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481
T+L L+L N L+ F + L+ L LN+N+L+ + K L+ +++ N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
+ L +L+ + L N+F C +
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCET 198
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 156 SGLSYLTTFDLSGNYFQGGV-PSWLFTLPSLLSIDLSKNMLN--GPIDLFQLPNSLQDVR 212
+GL+ L DLS N V P+ L L ++ L + L GP LF+ +LQ +
Sbjct: 76 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLY 134
Query: 213 LEENEIRGTIPNSTFQ-LVNLTILDLSSNNLS 243
L++N ++ +P+ TF+ L NLT L L N +S
Sbjct: 135 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS 165
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 80/208 (38%), Gaps = 23/208 (11%)
Query: 446 SHLRSLDLNSNKLEGPLPRSL--AKCIKLEVVNVGKNMISDSFPCWLGSLHE-----LKI 498
S L+ L L + ++ G P L A L ++N+ +N+ + WL L + LK+
Sbjct: 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGLKV 153
Query: 499 LVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 558
L + C FP AL +DLS N G R + ++ +K Q
Sbjct: 154 LSIAQAHSLNFSCEQVRVFP--ALSTLDLSDNPELG--ERGLISALCPLKFPTLQVLALR 209
Query: 559 MGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKS-LKVLNLSH 617
G + A+ QLQ +D S N ++ S L LNLS
Sbjct: 210 NAGMETPSGVCSALAAARVQLQ-------GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262
Query: 618 NSLTGNIPVSFENMTALESLDLSFNKLD 645
L +P L LDLS+N+LD
Sbjct: 263 TGLK-QVPKGLP--AKLSVLDLSYNRLD 287
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 156 SGLSYLTTFDLSGNYFQGGV-PSWLFTLPSLLSIDLSKNMLN--GPIDLFQLPNSLQDVR 212
+GL+ L DLS N V P+ L L ++ L + L GP LF+ +LQ +
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLY 135
Query: 213 LEENEIRGTIPNSTFQ-LVNLTILDLSSNNLS 243
L++N ++ +P+ TF+ L NLT L L N +S
Sbjct: 136 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS 166
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481
T+L L+L N L+ F + L+ L LN+N+L+ + K L+ +++ N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLC 511
+ L +L+ + L N+F C
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHD-- 576
+ L I+DL HN R++ K+ + G + ++ G + + + G D
Sbjct: 513 LEKLEILDLQHNNLA-----RLW------KHANPGGPIYFLKGLSHLHILNLESNGFDEI 561
Query: 577 -FQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG----NIPVSFENM 631
++ K L + +D N + V N SLK LNL N +T +F N+
Sbjct: 562 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 621
Query: 632 TALESLDLSFNKLD 645
T LD+ FN D
Sbjct: 622 T---ELDMRFNPFD 632
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHD-- 576
+ L I+DL HN R++ K+ + G + ++ G + + + G D
Sbjct: 503 LEKLEILDLQHNNLA-----RLW------KHANPGGPIYFLKGLSHLHILNLESNGFDEI 551
Query: 577 -FQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG----NIPVSFENM 631
++ K L + +D N + V N SLK LNL N +T +F N+
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611
Query: 632 TALESLDLSFNKLD 645
T LD+ FN D
Sbjct: 612 T---ELDMRFNPFD 622
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 650
++ VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHD-- 576
+ L I+DL HN R++ K+ + G + ++ G + + + G D
Sbjct: 508 LEKLEILDLQHNNLA-----RLW------KHANPGGPIYFLKGLSHLHILNLESNGFDEI 556
Query: 577 -FQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG----NIPVSFENM 631
++ K L + +D N + V N SLK LNL N +T +F N+
Sbjct: 557 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 616
Query: 632 TALESLDLSFNKLD 645
T LD+ FN D
Sbjct: 617 T---ELDMRFNPFD 627
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 62 LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
LDL T+I P + L NLQ+L+L+LN Q+T SPL L L L IG
Sbjct: 112 LDLTSTQITDVTP--LAGLSNLQVLYLDLN-QITNI-------SPLAGLTNLQYLSIGNA 161
Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLP 152
+ P + NL++ T + N + P
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISP 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,283,235
Number of Sequences: 62578
Number of extensions: 849421
Number of successful extensions: 2445
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1696
Number of HSP's gapped (non-prelim): 535
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)