Query 047486
Match_columns 776
No_of_seqs 750 out of 5300
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-63 2.8E-68 601.4 42.7 542 57-696 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-58 1.2E-62 552.6 39.5 539 31-670 68-609 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.2E-42 9.1E-47 334.1 -18.2 417 57-505 45-469 (565)
4 KOG4194 Membrane glycoprotein 100.0 4E-38 8.6E-43 319.9 6.8 364 113-503 80-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 6.8E-38 1.5E-42 318.2 8.5 370 162-644 81-451 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.2E-40 4.8E-45 322.2 -15.8 491 32-645 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.6E-36 3.4E-41 324.9 -4.6 483 37-667 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.1E-35 4.5E-40 316.4 -1.7 506 9-666 2-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.6E-33 1.2E-37 284.2 -2.7 393 113-674 9-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.6E-32 7.8E-37 278.3 -0.7 366 2-433 4-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.9E-26 1.5E-30 221.3 -3.0 291 204-506 65-358 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.9E-26 236.2 27.5 312 161-505 591-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 2E-21 4.4E-26 234.6 26.9 305 283-644 589-905 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3E-26 218.3 17.6 261 308-674 203-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 2.3E-21 5E-26 216.5 18.2 66 585-655 403-468 (788)
16 KOG4237 Extracellular matrix p 99.9 2.2E-23 4.8E-28 203.8 -2.8 149 358-507 52-201 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-19 3.3E-24 203.6 13.7 225 231-483 200-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 7.4E-19 1.6E-23 198.1 13.7 118 398-533 263-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.8E-23 183.2 0.6 284 9-317 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-18 7.5E-23 179.9 2.1 239 392-667 46-318 (319)
21 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.5E-22 143.6 -4.8 158 30-199 31-189 (264)
22 PLN03150 hypothetical protein; 99.6 9.5E-15 2.1E-19 164.8 11.3 118 585-702 419-538 (623)
23 KOG0617 Ras suppressor protein 99.5 8.8E-17 1.9E-21 139.7 -5.5 149 113-267 35-185 (264)
24 PLN03150 hypothetical protein; 99.2 4.1E-11 8.8E-16 135.5 9.5 113 521-673 419-532 (623)
25 KOG1909 Ran GTPase-activating 99.1 5.9E-12 1.3E-16 122.9 -2.2 191 4-196 29-254 (382)
26 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.2E-16 122.6 0.3 156 111-267 121-283 (505)
27 COG4886 Leucine-rich repeat (L 99.1 4.6E-10 1E-14 121.6 9.8 149 113-268 142-290 (394)
28 KOG3207 Beta-tubulin folding c 99.0 2.8E-11 6.2E-16 121.4 -0.7 207 57-268 121-339 (505)
29 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 121.4 7.1 177 113-324 118-295 (394)
30 KOG1909 Ran GTPase-activating 99.0 2E-11 4.3E-16 119.3 -3.3 94 225-318 208-310 (382)
31 KOG0532 Leucine-rich repeat (L 99.0 3.3E-11 7.2E-16 124.7 -2.4 192 282-481 74-271 (722)
32 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 111.4 0.5 125 185-319 286-412 (490)
33 KOG1259 Nischarin, modulator o 99.0 1.9E-10 4.1E-15 109.7 2.0 135 157-300 282-416 (490)
34 PF14580 LRR_9: Leucine-rich r 99.0 7.5E-10 1.6E-14 102.0 5.9 105 206-319 19-126 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 6.2E-10 1.3E-14 102.5 4.8 128 156-314 16-148 (175)
36 KOG0532 Leucine-rich repeat (L 98.9 3.3E-11 7.2E-16 124.7 -5.3 170 138-319 78-247 (722)
37 KOG4658 Apoptotic ATPase [Sign 98.9 2.3E-09 5E-14 123.7 7.0 254 57-321 523-785 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 82.9 2.3 59 585-643 2-60 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.4E-14 126.4 3.4 271 32-319 523-807 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.7E-14 81.1 3.4 61 608-668 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 5.7E-10 1.2E-14 120.9 -1.1 193 112-320 119-319 (414)
42 KOG0531 Protein phosphatase 1, 98.8 6.5E-10 1.4E-14 120.4 -0.8 225 393-673 91-322 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.7E-14 103.3 -5.4 176 6-193 186-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.4 3.6E-09 7.7E-14 112.8 -9.0 125 113-267 166-291 (1096)
45 KOG1859 Leucine-rich repeat pr 98.3 1.8E-08 3.9E-13 107.6 -5.4 179 152-344 102-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-08 9.2E-13 94.0 -2.8 182 422-642 185-373 (419)
47 KOG2982 Uncharacterized conser 98.3 9.4E-08 2E-12 91.6 -1.2 188 111-321 71-264 (418)
48 KOG4579 Leucine-rich repeat (L 98.1 1.8E-07 4E-12 79.2 -3.0 112 584-704 53-165 (177)
49 KOG4579 Leucine-rich repeat (L 98.1 7.7E-07 1.7E-11 75.5 0.2 83 586-671 29-115 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.1 3.2E-07 7E-12 86.9 -2.6 113 253-365 155-285 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.0 5.8E-07 1.3E-11 85.2 -1.4 41 229-269 271-317 (388)
52 KOG2982 Uncharacterized conser 98.0 1.7E-06 3.8E-11 83.1 0.9 85 134-218 44-133 (418)
53 PF12799 LRR_4: Leucine Rich r 97.9 8E-06 1.7E-10 56.2 2.9 36 609-645 2-37 (44)
54 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.2E-10 71.0 5.9 15 229-243 63-77 (233)
55 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 77.9 8.2 157 28-216 48-210 (426)
56 KOG4341 F-box protein containi 97.8 1.1E-06 2.4E-11 88.6 -4.8 229 6-241 139-383 (483)
57 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.1E-10 53.2 3.4 37 585-622 2-38 (44)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 90.1 2.2 109 57-172 122-233 (699)
59 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 74.6 9.1 32 446-480 156-187 (426)
60 KOG1644 U2-associated snRNP A' 97.5 0.00018 4E-09 65.8 6.3 62 206-267 64-125 (233)
61 KOG4341 F-box protein containi 97.5 3E-06 6.5E-11 85.6 -5.9 60 206-265 138-200 (483)
62 PF13306 LRR_5: Leucine rich r 97.4 0.0005 1.1E-08 61.1 7.5 119 371-496 10-128 (129)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00049 1.1E-08 61.1 6.5 60 130-191 7-66 (129)
64 KOG3665 ZYG-1-like serine/thre 97.3 9.8E-05 2.1E-09 83.8 2.1 149 5-164 122-280 (699)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00094 2E-08 64.1 2.3 62 206-267 65-128 (260)
66 KOG2123 Uncharacterized conser 96.4 0.00019 4.1E-09 68.8 -4.5 100 423-526 20-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.2 0.003 6.5E-08 60.8 2.8 39 110-148 64-104 (260)
68 KOG2123 Uncharacterized conser 96.2 0.00031 6.7E-09 67.5 -3.8 84 230-322 19-104 (388)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0038 8.3E-08 35.5 0.6 18 634-652 2-19 (22)
70 KOG1947 Leucine rich repeat pr 95.5 0.0011 2.5E-08 74.0 -3.9 61 111-171 243-307 (482)
71 KOG1947 Leucine rich repeat pr 95.5 0.0012 2.6E-08 73.8 -4.0 134 28-166 184-328 (482)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0054 1.2E-07 34.9 0.6 20 610-630 2-21 (22)
73 KOG4308 LRR-containing protein 93.3 0.00065 1.4E-08 73.8 -12.0 85 7-91 89-182 (478)
74 PF13504 LRR_7: Leucine rich r 92.1 0.1 2.3E-06 27.4 1.5 15 284-298 2-16 (17)
75 KOG4308 LRR-containing protein 91.2 0.00091 2E-08 72.7 -14.0 83 113-195 89-184 (478)
76 smart00370 LRR Leucine-rich re 90.5 0.22 4.8E-06 29.6 2.0 16 632-647 2-17 (26)
77 smart00369 LRR_TYP Leucine-ric 90.5 0.22 4.8E-06 29.6 2.0 16 632-647 2-17 (26)
78 smart00369 LRR_TYP Leucine-ric 88.9 0.33 7.3E-06 28.8 1.9 22 607-628 1-22 (26)
79 smart00370 LRR Leucine-rich re 88.9 0.33 7.3E-06 28.8 1.9 22 607-628 1-22 (26)
80 KOG3864 Uncharacterized conser 88.6 0.038 8.3E-07 51.1 -3.4 83 58-144 102-185 (221)
81 KOG0473 Leucine-rich repeat pr 87.4 0.017 3.7E-07 54.3 -6.5 79 113-194 44-122 (326)
82 KOG0473 Leucine-rich repeat pr 87.2 0.026 5.6E-07 53.2 -5.5 81 585-668 43-123 (326)
83 KOG3864 Uncharacterized conser 86.6 0.073 1.6E-06 49.3 -2.9 81 374-454 102-184 (221)
84 PF13516 LRR_6: Leucine Rich r 86.6 0.15 3.3E-06 29.6 -0.5 13 609-621 3-15 (24)
85 PF13516 LRR_6: Leucine Rich r 86.0 0.16 3.5E-06 29.5 -0.7 21 631-651 1-21 (24)
86 smart00365 LRR_SD22 Leucine-ri 74.1 2.8 6E-05 24.9 1.8 14 608-621 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 66.6 4.1 8.9E-05 24.1 1.4 18 283-300 2-19 (26)
88 KOG4242 Predicted myosin-I-bin 64.0 20 0.00043 38.3 6.7 112 206-318 354-480 (553)
89 smart00368 LRR_RI Leucine rich 62.0 6 0.00013 23.9 1.6 14 632-645 2-15 (28)
90 TIGR00864 PCC polycystin catio 58.2 3.2 7E-05 53.8 -0.1 32 614-645 1-32 (2740)
91 KOG4242 Predicted myosin-I-bin 57.9 41 0.00089 36.0 7.7 15 522-536 356-370 (553)
92 smart00367 LRR_CC Leucine-rich 56.3 8.8 0.00019 22.6 1.6 15 81-95 2-16 (26)
93 KOG3763 mRNA export factor TAP 51.7 7.6 0.00016 42.2 1.4 36 583-618 217-254 (585)
94 PF00558 Vpu: Vpu protein; In 32.5 31 0.00066 27.1 1.7 10 739-748 14-23 (81)
95 PF04478 Mid2: Mid2 like cell 31.0 41 0.00088 30.0 2.4 7 729-735 52-58 (154)
96 PF15179 Myc_target_1: Myc tar 30.8 11 0.00024 34.2 -1.1 25 724-748 16-40 (197)
97 PTZ00382 Variant-specific surf 28.5 38 0.00083 27.9 1.8 21 728-748 68-88 (96)
98 TIGR00864 PCC polycystin catio 28.0 35 0.00076 45.0 2.1 66 590-655 1-68 (2740)
99 PF05393 Hum_adeno_E3A: Human 27.9 36 0.00079 26.8 1.4 7 735-741 37-43 (94)
100 KOG3763 mRNA export factor TAP 25.0 45 0.00097 36.6 1.9 63 423-485 219-285 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-63 Score=601.42 Aligned_cols=542 Identities=35% Similarity=0.533 Sum_probs=427.5
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR 136 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~ 136 (776)
.+++.|+|++|.+.+.++.++..+++|++|+|++| .+.+.+|..+ +..+++|++|++++|++++.+|. +.+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~----~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDI----FTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHH----hccCCCCCEEECcCCccccccCc--cccCC
Confidence 56777777777777777777777777777777777 7777677653 22444577777777777776664 45677
Q ss_pred CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCC-CCCCCCCcEEEccC
Q 047486 137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDL-FQLPNSLQDVRLEE 215 (776)
Q Consensus 137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~ 215 (776)
|++|++++|.+++..|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+..+. +..+++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 77777777777777777777777788888877777777777777777788888877777764443 34447788888888
Q ss_pred CcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCC
Q 047486 216 NEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNI 295 (776)
Q Consensus 216 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l 295 (776)
|.+.+.+|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.. .
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~---~---------------------- 275 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG---P---------------------- 275 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeec---c----------------------
Confidence 88877788888888888888888888876665 567888888888888887432 1
Q ss_pred CCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCC
Q 047486 296 TEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPST 375 (776)
Q Consensus 296 ~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 375 (776)
+|..+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+++..+..+ ..+++|
T Consensus 276 --~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~------------------~~l~~L 334 (968)
T PLN00113 276 --IPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVAL------------------TSLPRL 334 (968)
T ss_pred --CchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhH------------------hcCCCC
Confidence 23334444455555555555444444332 334444444444443332222111 123455
Q ss_pred cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCC
Q 047486 376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS 455 (776)
Q Consensus 376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 455 (776)
+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.... +|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 6677777777778888888889999999999999888888887765 799999999999999999999999999999999
Q ss_pred CcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCC
Q 047486 456 NKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGF 535 (776)
Q Consensus 456 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~ 535 (776)
|++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|... ..++|+.||+++|++++.
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~ 490 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGA 490 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCc
Confidence 99999999999999999999999999999999888899999999999999988777653 457899999999999988
Q ss_pred CCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeC
Q 047486 536 LPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNL 615 (776)
Q Consensus 536 ~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 615 (776)
+|..+ . .++.|+.|++++|++.+.+|..++++++|++|+|
T Consensus 491 ~~~~~-~---------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 491 VPRKL-G---------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred cChhh-h---------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 77542 1 1567899999999999999999999999999999
Q ss_pred CCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCC
Q 047486 616 SHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 695 (776)
Q Consensus 616 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~ 695 (776)
++|.+++.+|..|.++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...++.||+.+||.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 047486 696 P 696 (776)
Q Consensus 696 p 696 (776)
+
T Consensus 611 ~ 611 (968)
T PLN00113 611 D 611 (968)
T ss_pred c
Confidence 5
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-58 Score=552.56 Aligned_cols=539 Identities=29% Similarity=0.430 Sum_probs=425.6
Q ss_pred CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCC-CCCCCCEEeccCCCCccccCCCCCCCCCccc
Q 047486 31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRE 109 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~ 109 (776)
..+++.|+|+++.+.+..+..+..+ ++|++|+|++|.+.+.+|..+. .+++|++|++++| .+.+.+|. ..
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~-------~~ 138 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR-------GS 138 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc-------cc
Confidence 3578889999999888888888888 8999999999999888887765 8899999999999 88877774 33
Q ss_pred CCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486 110 LDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189 (776)
Q Consensus 110 L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 189 (776)
+.+|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..|+++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 55599999999999888898899999999999999998888899999999999999999999888898899999999999
Q ss_pred ccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486 190 LSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268 (776)
Q Consensus 190 l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~ 268 (776)
+++|.+.+..+. +..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeec
Confidence 999988875543 4555899999999999988899999999999999999999887666 67788899999999988743
Q ss_pred ccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccc
Q 047486 269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL 348 (776)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 348 (776)
. . +|.++.++++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+++..+
T Consensus 298 ~---~------------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 298 G---E------------------------IPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred c---C------------------------CChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCC
Confidence 2 1 23344444455555555555444443332 334444444444333332211
Q ss_pred ccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEE
Q 047486 349 HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLH 428 (776)
Q Consensus 349 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 428 (776)
..+ ..+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+..+. +|+.|+
T Consensus 350 ~~l------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~L~~L~ 410 (968)
T PLN00113 350 KNL------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR-SLRRVR 410 (968)
T ss_pred hHH------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC-CCCEEE
Confidence 111 1134456666666777777777788888888888888888888888777765 688888
Q ss_pred CCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccc
Q 047486 429 LKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG 508 (776)
Q Consensus 429 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 508 (776)
+++|.+++..|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSG 489 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCC
Confidence 88888888888888888888888888888888888888888888888888888888777765 45788888888888888
Q ss_pred cCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeE
Q 047486 509 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRA 588 (776)
Q Consensus 509 ~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 588 (776)
..|... ..+++|+.|++++|.+.+.+|..+ .. ++.|+.
T Consensus 490 ~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~-~~---------------------------------------l~~L~~ 527 (968)
T PLN00113 490 AVPRKL--GSLSELMQLKLSENKLSGEIPDEL-SS---------------------------------------CKKLVS 527 (968)
T ss_pred ccChhh--hhhhccCEEECcCCcceeeCChHH-cC---------------------------------------ccCCCE
Confidence 777654 567888999999999988887653 11 567899
Q ss_pred EecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCc-
Q 047486 589 MDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR- 667 (776)
Q Consensus 589 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~- 667 (776)
|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|.. +....+....+.+|+
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNID 606 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999964 333445555667776
Q ss_pred cee
Q 047486 668 LWG 670 (776)
Q Consensus 668 l~g 670 (776)
++|
T Consensus 607 lc~ 609 (968)
T PLN00113 607 LCG 609 (968)
T ss_pred ccC
Confidence 554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-42 Score=334.11 Aligned_cols=417 Identities=24% Similarity=0.316 Sum_probs=291.7
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR 136 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~ 136 (776)
..++.+.+++|.+. .+.+++.++..|.+|++++| .+.. .|.+ ++++..++.+++++|+++ .+|..++.+.+
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~-lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~ 115 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQ-LPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSLIS 115 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhh-CCHH-----HHHHHHHHHhhcccchHh-hccHHHhhhhh
Confidence 46888899999887 66677888999999999998 6663 5555 455555888999999998 78889999999
Q ss_pred CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCC
Q 047486 137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN 216 (776)
Q Consensus 137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 216 (776)
|+.++.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.++++.+|..+++.+|.+....+..-....|++|+...|
T Consensus 116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence 999999999988 67788899999999999999988 7788889999999999999988876555422488999999998
Q ss_pred cCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC
Q 047486 217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT 296 (776)
Q Consensus 217 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 296 (776)
.++ .+|+.++.+.+|+.|++..|++. .+| .|.+|..|+++.++.|+|..++... ...++++..||+++|+++
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccccccc
Confidence 886 78999999999999999999998 666 7899999999999999987777643 457899999999999999
Q ss_pred CcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc-----cccCEEeccCcccCCCCCCC
Q 047486 297 EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW-----MNITTLDLRNNRIQGSILVP 371 (776)
Q Consensus 297 ~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~ 371 (776)
++|+.+.-+.+|+.||+++|.++ .+|... +++ .|+.|.+.+|.+..+...-. .-|++|.= .+...-+..
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sL-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~ 339 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPYSL-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQ 339 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCccc-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCC
Confidence 99998888999999999999998 577766 777 89999999998766532111 00111100 010000000
Q ss_pred CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCC--CccEEECCCCcCCccCcccccCCCCcc
Q 047486 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFST--ELITLHLKNNSLEGHIHDTFANASHLR 449 (776)
Q Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~ 449 (776)
. +.=.-+.-..............+.++|++++-+++ .+|+.++.... -.+..+++.|++. .+|..+..+..+.
T Consensus 340 s---e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv 414 (565)
T KOG0472|consen 340 S---EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV 414 (565)
T ss_pred C---cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence 0 00000000000011112233456777888888887 77776665431 2566777777776 3444444444433
Q ss_pred -EEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486 450 -SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505 (776)
Q Consensus 450 -~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 505 (776)
.+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+
T Consensus 415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc
Confidence 3344444443 55666666666666666666554 344444444444444444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-38 Score=319.91 Aligned_cols=364 Identities=27% Similarity=0.316 Sum_probs=297.9
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 192 (776)
-+.||+++|.+...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 567999999999888889999999999999999998 6787666777899999999999988888899999999999999
Q ss_pred CcCCCc-CCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486 193 NMLNGP-IDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT 271 (776)
Q Consensus 193 n~l~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~ 271 (776)
|.++.. .+.|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|+|....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence 999873 344544478999999999999888888999999999999999998 888899999999999999999987665
Q ss_pred cccccccccCCCCccEEeccCCCCCCcch-hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccccc
Q 047486 272 SSANISIKYSLPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP 350 (776)
Q Consensus 272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 350 (776)
+.. |.++++|+.|.+..|++..+.+ .|..+.++++|+|+.|+++..-..+. .++++|+.|++++|.|..+....
T Consensus 238 ~lt----FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 238 GLT----FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred hhh----hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc-cccchhhhhccchhhhheeecch
Confidence 543 6678899999999998887764 67788889999999998884444444 67888888888888888776654
Q ss_pred ccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC
Q 047486 351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 430 (776)
Q Consensus 351 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~ 430 (776)
+. .+++|++|+|++|.++...+.+|..+..|++|+|++|.+. .+.+..+.+.++|++|||+
T Consensus 313 Ws------------------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 313 WS------------------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hh------------------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCc
Confidence 42 2345567777777777777778888888888888888887 6666655655678888888
Q ss_pred CCcCCccCc---ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccC
Q 047486 431 NNSLEGHIH---DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503 (776)
Q Consensus 431 ~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 503 (776)
+|.++..+. ..|.++++|+.|+|.+|++..+.-.+|.++.+|+.|||.+|.|..+-|.+|..+ .|++|.+..
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 888775543 467788888888888888887777788888888888888888888888888887 788777754
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-38 Score=318.19 Aligned_cols=370 Identities=25% Similarity=0.300 Sum_probs=242.2
Q ss_pred CEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCc
Q 047486 162 TTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241 (776)
Q Consensus 162 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 241 (776)
+.||+++|.+....+..|.++++|+++++.+|.++..+.......+|+.|+|.+|.|+..-.+.+..++.|+.||||.|.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 34566666665555555566666666666666555433333333557777777777776667778888889999999998
Q ss_pred CccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch-hhhCCcccceEecccCcccc
Q 047486 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQG 320 (776)
Q Consensus 242 l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~ 320 (776)
++ .++...|..-.++++|+|++|.|+.+.... |..+.+|..|.++.|+++.+|. .|.++++|+.|+|..|+|.
T Consensus 161 is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir- 234 (873)
T KOG4194|consen 161 IS-EIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR- 234 (873)
T ss_pred hh-cccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-
Confidence 87 788788888888999999999887776543 5566678888888888888874 6677888888888888775
Q ss_pred ccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCC
Q 047486 321 RISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQ 400 (776)
Q Consensus 321 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 400 (776)
.+....|.++++|+ .|.+..|.+...-...|..+.+++
T Consensus 235 ive~ltFqgL~Sl~------------------------------------------nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQ------------------------------------------NLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred eehhhhhcCchhhh------------------------------------------hhhhhhcCcccccCcceeeecccc
Confidence 22223334444444 444444444444455566666677
Q ss_pred EEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC
Q 047486 401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN 480 (776)
Q Consensus 401 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 480 (776)
+|+|+.|++...-..+++++. .|+.|++++|.|..+-++.+..+++|++|+|+.|+|+...+.+|..+..|++|+|++|
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eeecccchhhhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 777777766633334445544 5666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceeccc
Q 047486 481 MISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG 560 (776)
Q Consensus 481 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~ 560 (776)
.+......+|..+++|++|+|++|.++..+-+.. ..|.
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa------------------------~~f~------------------ 389 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA------------------------VAFN------------------ 389 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch------------------------hhhc------------------
Confidence 6665555556555555555555555544322211 0011
Q ss_pred CccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEecc
Q 047486 561 GAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 640 (776)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 640 (776)
.+++|+.|++.+|++..+...+|.++.+|+.|||.+|.|..+.|.+|..| .|++|.++
T Consensus 390 ---------------------gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 390 ---------------------GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ---------------------cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 14556677777777776666778888888888888888888888888887 78777765
Q ss_pred CccC
Q 047486 641 FNKL 644 (776)
Q Consensus 641 ~N~l 644 (776)
.-.+
T Consensus 448 Sssf 451 (873)
T KOG4194|consen 448 SSSF 451 (873)
T ss_pred ccce
Confidence 5433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=322.18 Aligned_cols=491 Identities=25% Similarity=0.320 Sum_probs=336.2
Q ss_pred CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486 32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD 111 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~ 111 (776)
..|+.+.+++|.+....+ .+.++ ..|++|++.+|.+. ..|.+++.+..++.++.++| .+. .+|.. +..+.
T Consensus 45 v~l~~lils~N~l~~l~~-dl~nL-~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls-~lp~~-----i~s~~ 114 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE-DLKNL-ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLS-ELPEQ-----IGSLI 114 (565)
T ss_pred cchhhhhhccCchhhccH-hhhcc-cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHh-hccHH-----Hhhhh
Confidence 346667777777776643 56667 67778888877776 67777777777778888777 555 35555 33333
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
.|+.+++++|.+. .+|++++.+..|..++..+|+++ ..|.++..+.+|..+++.+|++....|. .-+++.|++||..
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccc
Confidence 4777788888777 56777788888888888888877 5677778888888888888888744444 4447888888888
Q ss_pred CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486 192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT 271 (776)
Q Consensus 192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~ 271 (776)
.|.+...++....+.+|+-|++..|++. ..| .|..|..|+++.++.|.+. .+|.....+++++..||+..|+++++|
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc
Confidence 8877776666666677888888888886 556 7888888888888888887 778777788888888888888888888
Q ss_pred cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccC-C-ccCCeEeCcCccccccccc
Q 047486 272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPG-W-KSLIDLDLSNNFMTHIELH 349 (776)
Q Consensus 272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~-l-~~L~~L~l~~n~l~~~~~~ 349 (776)
+++ .-+.+|..||+++|.++.+|..++++ .|+.|.+.+|.+. .+-..+..+ . .-|++|.= .++.....
T Consensus 269 de~-----clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~dglS 338 (565)
T KOG0472|consen 269 DEI-----CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDDGLS 338 (565)
T ss_pred hHH-----HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccCCCC
Confidence 664 35678888899999998888888888 8899999998875 222221111 0 11222211 11100000
Q ss_pred cccccCEEeccCcccCCCCCC--CCCCCcEEEccCCcCccCCCccccCCC--CCCEEEccCCcCcccCCchhhhcCCCcc
Q 047486 350 PWMNITTLDLRNNRIQGSILV--PPPSTKVLLVSNNKLSGKIPPSICSLS--SLQYLSLSDNNLSGTIPPCLGNFSTELI 425 (776)
Q Consensus 350 ~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~~L~ 425 (776)
.-..-+.-. .....+..+. ...+.+.|+++.-+++....+.|.... -.+..+++.|++. ++|..+.....-.+
T Consensus 339 ~se~~~e~~--~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT 415 (565)
T KOG0472|consen 339 QSEGGTETA--MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT 415 (565)
T ss_pred CCccccccc--CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH
Confidence 000000000 0000001111 134567777777777744444444322 3778999999998 89988877764455
Q ss_pred EEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486 426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505 (776)
Q Consensus 426 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 505 (776)
.+++++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+..|+.|+++.|.+. ..|..+..+..++.+..
T Consensus 416 ~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtlla---- 488 (565)
T KOG0472|consen 416 DLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLA---- 488 (565)
T ss_pred HHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHh----
Confidence 6667776664 77888899999999999999887 67888899999999999999886 45554433333222222
Q ss_pred ccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcc
Q 047486 506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVM 585 (776)
Q Consensus 506 l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (776)
T Consensus 489 -------------------------------------------------------------------------------- 488 (565)
T KOG0472|consen 489 -------------------------------------------------------------------------------- 488 (565)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCc
Q 047486 586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645 (776)
Q Consensus 586 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 645 (776)
++|++....|..+.++.+|.+|||.+|.+. .+|..+++|++|++|++++|.+.
T Consensus 489 ------s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 ------SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ------ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 234444444555777888888888888887 67778888888888888888887
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=324.92 Aligned_cols=483 Identities=26% Similarity=0.341 Sum_probs=305.3
Q ss_pred EeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEE
Q 047486 37 LHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVL 116 (776)
Q Consensus 37 L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L 116 (776)
+|++.+++.-+ |..+..- ..++.|+++.|.+-...-+.+.+.-+|+.||+++| .+. ..|.. +..+.+|+.|
T Consensus 3 vd~s~~~l~~i-p~~i~~~-~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~-~fp~~-----it~l~~L~~l 73 (1081)
T KOG0618|consen 3 VDASDEQLELI-PEQILNN-EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QIS-SFPIQ-----ITLLSHLRQL 73 (1081)
T ss_pred cccccccCccc-chhhccH-HHHHhhhccccccccCchHHhhheeeeEEeecccc-ccc-cCCch-----hhhHHHHhhc
Confidence 34555554433 4444333 34666666666544221233334445777777776 433 33433 4445557777
Q ss_pred EccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCC
Q 047486 117 DIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLN 196 (776)
Q Consensus 117 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 196 (776)
+++.|.+. ..|.+.+++.+|++++|.+|.+. ..|..+..+++|++||++.|.+. .+|..+..+..+..+..++|...
T Consensus 74 n~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~ 150 (1081)
T KOG0618|consen 74 NLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI 150 (1081)
T ss_pred ccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence 77777776 56777888888888888888777 67888888888888888888886 77777888888888888888222
Q ss_pred CcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccccccc
Q 047486 197 GPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANI 276 (776)
Q Consensus 197 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 276 (776)
...+ . ..++.+++..|.+.+.++..+..++. .|+|.+|.+. . ..+..+.+|+.|....|++..+...
T Consensus 151 ~~lg---~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~~~--- 217 (1081)
T KOG0618|consen 151 QRLG---Q-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELEIS--- 217 (1081)
T ss_pred hhhc---c-ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccceEEec---
Confidence 1111 1 33777777777777777777776666 6888888775 3 3456667777777776664433221
Q ss_pred ccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCE
Q 047486 277 SIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITT 356 (776)
Q Consensus 277 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~ 356 (776)
-+ +|+.|+.++|.+....+. .
T Consensus 218 -----g~-----------------------~l~~L~a~~n~l~~~~~~---p---------------------------- 238 (1081)
T KOG0618|consen 218 -----GP-----------------------SLTALYADHNPLTTLDVH---P---------------------------- 238 (1081)
T ss_pred -----Cc-----------------------chheeeeccCcceeeccc---c----------------------------
Confidence 13 334444444433310000 0
Q ss_pred EeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCc
Q 047486 357 LDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG 436 (776)
Q Consensus 357 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 436 (776)
.+.+|+++++++|+++ .+|.+++.+.+|+.++..+|+++ .+|..++... +|+.|.+.+|.+..
T Consensus 239 --------------~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~y 301 (1081)
T KOG0618|consen 239 --------------VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELEY 301 (1081)
T ss_pred --------------ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhhh
Confidence 0122344444444444 34567777777777777777775 6777666665 67777777777764
Q ss_pred cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCC-CcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCC
Q 047486 437 HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK-LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI 515 (776)
Q Consensus 437 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 515 (776)
+|......++|+.|+|..|++....+..+..... |..|+.+.|++.......=...+.|+.|++.+|.++...-..+
T Consensus 302 -ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l- 379 (1081)
T KOG0618|consen 302 -IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL- 379 (1081)
T ss_pred -CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh-
Confidence 3445556777778888877777544444444443 6677777777664432222345677778888888776544433
Q ss_pred CcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc
Q 047486 516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR 595 (776)
Q Consensus 516 ~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 595 (776)
..+..|++|+|++|++. .+|...+.+++ .|+.|+||+|+
T Consensus 380 -~~~~hLKVLhLsyNrL~-~fpas~~~kle---------------------------------------~LeeL~LSGNk 418 (1081)
T KOG0618|consen 380 -VNFKHLKVLHLSYNRLN-SFPASKLRKLE---------------------------------------ELEELNLSGNK 418 (1081)
T ss_pred -ccccceeeeeecccccc-cCCHHHHhchH---------------------------------------HhHHHhcccch
Confidence 55677888888888876 56766555443 34566777777
Q ss_pred ccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcC-CCchhhccccccccccCccCc
Q 047486 596 FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG-RIPEQLLSVTALALLNLSYNR 667 (776)
Q Consensus 596 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~ 667 (776)
++ .+|.++..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++. .+|..... ++|++||++||.
T Consensus 419 L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 419 LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 77 56777777777888877777776 556 67777778888888887764 33443333 677788877775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=316.36 Aligned_cols=506 Identities=25% Similarity=0.294 Sum_probs=326.3
Q ss_pred EEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEec
Q 047486 9 HLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88 (776)
Q Consensus 9 ~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L 88 (776)
.+|.+.+++ ..+|..+-.-..+..|+++.|.+....-+.+.+. -+|+.|++++|.+. ..|..+..+++|+.|++
T Consensus 2 ~vd~s~~~l----~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~-v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 2 HVDASDEQL----ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKR-VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNL 75 (1081)
T ss_pred CcccccccC----cccchhhccHHHHHhhhccccccccCchHHhhhe-eeeEEeeccccccc-cCCchhhhHHHHhhccc
Confidence 467777776 4556555554558888888887766433344443 45999999998876 78888889999999999
Q ss_pred cCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccC
Q 047486 89 NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSG 168 (776)
Q Consensus 89 s~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 168 (776)
+.| .+. ..|.. +.++++|+++.|.+|.+. ..|.++..+++|++|+++.|.+. .+|..+..+..++.++.++
T Consensus 76 s~n-~i~-~vp~s-----~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 76 SRN-YIR-SVPSS-----CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred chh-hHh-hCchh-----hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhc
Confidence 998 554 45544 556666999999988887 78999999999999999999987 7888899999999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCc-EEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccC
Q 047486 169 NYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQ-DVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR 247 (776)
Q Consensus 169 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~ 247 (776)
|......+ ... ++.+++..|.+.+.+.... ..++ .|+|.+|.+. ...+..+.+|+.|....|++. .+.
T Consensus 147 N~~~~~lg----~~~-ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~ 215 (1081)
T KOG0618|consen 147 NEKIQRLG----QTS-IKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE 215 (1081)
T ss_pred chhhhhhc----ccc-chhhhhhhhhcccchhcch--hhhheeeecccchhh---hhhhhhccchhhhhhhhcccc-eEE
Confidence 83222222 222 7788888887766333221 2233 5999999886 345677889999999999887 322
Q ss_pred ccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcc
Q 047486 248 FDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDS 327 (776)
Q Consensus 248 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (776)
-.-++|+.|+.++|.++.... .....+|++++++.++++.+|+|+..+.+|+.++..+|.++ .+|...
T Consensus 216 ----~~g~~l~~L~a~~n~l~~~~~------~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri- 283 (1081)
T KOG0618|consen 216 ----ISGPSLTALYADHNPLTTLDV------HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRI- 283 (1081)
T ss_pred ----ecCcchheeeeccCcceeecc------ccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHH-
Confidence 345789999999999763322 22567899999999999999999999999999999999996 666655
Q ss_pred cCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 047486 328 PGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407 (776)
Q Consensus 328 ~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n 407 (776)
....+|+.|.+..|.+.. +|......++|++|+|..|
T Consensus 284 ~~~~~L~~l~~~~nel~y-------------------------------------------ip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELEY-------------------------------------------IPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred hhhhhHHHHHhhhhhhhh-------------------------------------------CCCcccccceeeeeeehhc
Confidence 334555555555554443 3444444556666666666
Q ss_pred cCcccCCchhhhcCC-CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCccc
Q 047486 408 NLSGTIPPCLGNFST-ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF 486 (776)
Q Consensus 408 ~l~~~~p~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 486 (776)
++. .+|+.+..... +|..++.+.|.+.......=...+.|+.|++.+|.++...-..+.+...|++|+|++|++....
T Consensus 321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 655 55554433322 2445555555544322111122344555555555555444444455555555555555554333
Q ss_pred chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486 487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566 (776)
Q Consensus 487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 566 (776)
...+.++.. |+.|+||+|+++ .+|..+ ..
T Consensus 400 as~~~kle~--------------------------LeeL~LSGNkL~-~Lp~tv-a~----------------------- 428 (1081)
T KOG0618|consen 400 ASKLRKLEE--------------------------LEELNLSGNKLT-TLPDTV-AN----------------------- 428 (1081)
T ss_pred HHHHhchHH--------------------------hHHHhcccchhh-hhhHHH-Hh-----------------------
Confidence 333333333 333333444433 333221 22
Q ss_pred eEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCccc-CCccccccCCCcEEeccCccCc
Q 047486 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLD 645 (776)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 645 (776)
+..|++|..-+|++. ..| ++..+++|+.+|+|.|+++.. +|..... ++|++|||++|.-.
T Consensus 429 ----------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 429 ----------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred ----------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 233344444455555 455 677888888888888888753 3433332 78888888888754
Q ss_pred CCCchhhccccccccccCccC
Q 047486 646 GRIPEQLLSVTALALLNLSYN 666 (776)
Q Consensus 646 ~~~p~~l~~l~~L~~L~ls~N 666 (776)
..--..|..+.++...++.-|
T Consensus 490 ~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 490 VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhHHhhhhhheecccC
Confidence 344445556666666665555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.6e-33 Score=284.20 Aligned_cols=393 Identities=28% Similarity=0.416 Sum_probs=248.4
Q ss_pred CcEEEccCCccc-ccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 113 LSVLDIGFCNFT-GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 113 L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 666778888777 466777777777777777777776 57777777777777777777776 344456667777777777
Q ss_pred CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486 192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT 271 (776)
Q Consensus 192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~ 271 (776)
.|++.. .-+|..++.+..|+.||||+|++. .+| ..+..-+++-.|+||+|+|.++|
T Consensus 87 ~N~LKn----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~IetIP 142 (1255)
T KOG0444|consen 87 DNNLKN----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIETIP 142 (1255)
T ss_pred cccccc----------------------CCCCchhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccccCC
Confidence 666542 135666666677777777777766 444 44555566666666666665555
Q ss_pred cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc
Q 047486 272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351 (776)
Q Consensus 272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 351 (776)
... +.++..|-.|++++|.+..+|+.+..+..|+.|+|++|.+.- ........+++|
T Consensus 143 n~l----finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL------------------ 199 (1255)
T KOG0444|consen 143 NSL----FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSL------------------ 199 (1255)
T ss_pred chH----HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhh------------------
Confidence 433 334555556666666666677777777777777777776541 111001222223
Q ss_pred cccCEEeccCcccCCCCCCCCCCCcEEEccCCcCc-cCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC
Q 047486 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLS-GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 430 (776)
Q Consensus 352 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~ 430 (776)
+.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. .+|+++.... +|+.|+|+
T Consensus 200 ------------------------~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS 253 (1255)
T KOG0444|consen 200 ------------------------SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLS 253 (1255)
T ss_pred ------------------------hhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccC
Confidence 23333332211 257778888888899999999887 8888888876 68888888
Q ss_pred CCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccC-cccchhhcCCCCcCEEEccCCccccc
Q 047486 431 NNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS-DSFPCWLGSLHELKILVLRSNRFYGP 509 (776)
Q Consensus 431 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 509 (776)
+|+|+.. ......-.+|++|+|+.|+++ .+|.++.+++.|+.|.+.+|+++ .-+|..++.+..|+++.
T Consensus 254 ~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~--------- 322 (1255)
T KOG0444|consen 254 GNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH--------- 322 (1255)
T ss_pred cCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH---------
Confidence 8888743 223344456777777777776 56777777777777777666664 12333333333333322
Q ss_pred CCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEE
Q 047486 510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAM 589 (776)
Q Consensus 510 ~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 589 (776)
T Consensus 323 -------------------------------------------------------------------------------- 322 (1255)
T KOG0444|consen 323 -------------------------------------------------------------------------------- 322 (1255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccC---
Q 047486 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN--- 666 (776)
Q Consensus 590 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N--- 666 (776)
.++|.+. ..|+.+..|..|+.|.|++|++. ..|+++.-++.|+.|||..|.-.-..|.--..-++|+.-|+..-
T Consensus 323 -aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~ 399 (1255)
T KOG0444|consen 323 -AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQH 399 (1255)
T ss_pred -hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhh
Confidence 2333332 46777777888888888888887 67888888888888888888765343332122245555444321
Q ss_pred --cceecCCC
Q 047486 667 --RLWGRIPR 674 (776)
Q Consensus 667 --~l~g~iP~ 674 (776)
++.|..|.
T Consensus 400 QlrlAG~~pa 409 (1255)
T KOG0444|consen 400 QLRLAGQMPA 409 (1255)
T ss_pred HHhhccCCcc
Confidence 45565553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.6e-32 Score=278.32 Aligned_cols=366 Identities=23% Similarity=0.329 Sum_probs=292.1
Q ss_pred CCCCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCC
Q 047486 2 SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLP 81 (776)
Q Consensus 2 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~ 81 (776)
+-|+..+-.|+++|.++ .+.+|.....++.+++|.|....+... |+.++.+ .+|++|.+++|++. .+-..++.++
T Consensus 4 gVLpFVrGvDfsgNDFs--g~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~l-qkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFS--GDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRL-QKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred cccceeecccccCCcCC--CCcCchhHHHhhheeEEEechhhhhhC-hHHHHHH-hhhhhhhhhhhhhH-hhhhhhccch
Confidence 34778899999999987 468999999999999999998888765 9999999 99999999999987 5667788999
Q ss_pred CCCEEeccCCCCcc-ccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCC
Q 047486 82 NLQILFLNLNSQLT-GYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSY 160 (776)
Q Consensus 82 ~L~~L~Ls~n~~~~-~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 160 (776)
.|+.+++..| ++. ..+|..++. ++.|++||||+|++. ..|..+..-+++-.|+|++|+|..+--..|-++..
T Consensus 79 ~LRsv~~R~N-~LKnsGiP~diF~-----l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 79 RLRSVIVRDN-NLKNSGIPTDIFR-----LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhHHHhhhcc-ccccCCCCchhcc-----cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 9999999999 553 457777544 444999999999999 78999999999999999999999544455689999
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCC-cCCCCCCCCCCcEEEccCCcCC-CCCCccccCCCCCCEEECC
Q 047486 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR-GTIPNSTFQLVNLTILDLS 238 (776)
Q Consensus 161 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls 238 (776)
|-.||||+|++. .+|..+..+..|++|+|++|.+.. .......+++|++|.+++.+-+ ..+|..+..+.+|..+|+|
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 999999999998 778889999999999999998763 1111222378899999886543 3688999999999999999
Q ss_pred CCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCcc
Q 047486 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRI 318 (776)
Q Consensus 239 ~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l 318 (776)
.|.+. .+| ..+-++++|+.|+||+|+|+.+.... ....+|+.|+++.|+++.+|+++..+++|+.|.+.+|++
T Consensus 231 ~N~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~~-----~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 231 ENNLP-IVP-ECLYKLRNLRRLNLSGNKITELNMTE-----GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccCCC-cch-HHHhhhhhhheeccCcCceeeeeccH-----HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 99997 666 77889999999999999988776443 235688999999999999999999999999999999987
Q ss_pred cc-ccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCC
Q 047486 319 QG-RISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLS 397 (776)
Q Consensus 319 ~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 397 (776)
+- -+|..+ +.+..|+.+..++|.+. .+|..++.|.
T Consensus 304 ~FeGiPSGI-GKL~~Levf~aanN~LE-------------------------------------------lVPEglcRC~ 339 (1255)
T KOG0444|consen 304 TFEGIPSGI-GKLIQLEVFHAANNKLE-------------------------------------------LVPEGLCRCV 339 (1255)
T ss_pred cccCCccch-hhhhhhHHHHhhccccc-------------------------------------------cCchhhhhhH
Confidence 62 244444 55555544444443332 5667777777
Q ss_pred CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCc
Q 047486 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 433 (776)
Q Consensus 398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~ 433 (776)
.|+.|.|+.|++. .+|+++.-++ .|+.||+.+|.
T Consensus 340 kL~kL~L~~NrLi-TLPeaIHlL~-~l~vLDlreNp 373 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLI-TLPEAIHLLP-DLKVLDLRENP 373 (1255)
T ss_pred HHHHhccccccee-echhhhhhcC-CcceeeccCCc
Confidence 7777777777776 6777665444 57777777664
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=6.9e-26 Score=221.26 Aligned_cols=291 Identities=28% Similarity=0.290 Sum_probs=186.1
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccC-CCCCccccccccccccCC
Q 047486 204 LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN-NSLLSFTSSANISIKYSL 282 (776)
Q Consensus 204 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~l 282 (776)
.++.-..++|..|.|+...+.+|..+++|++|||++|.|+ .|.+++|.++++|..|-+.+ |+|++++... |..+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~----F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGA----FGGL 139 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhH----hhhH
Confidence 3466778888888888777778888999999999999988 77778899998888877766 8888887754 6678
Q ss_pred CCccEEeccCCCCCCcc-hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccC
Q 047486 283 PSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361 (776)
Q Consensus 283 ~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 361 (776)
.+++.|.+.-|++..++ +.|..++++..|.+.+|.+. .++...|..+..++.+.+..|.+.....-.+ +.. ++..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~w--la~-~~a~ 215 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPW--LAD-DLAM 215 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccch--hhh-HHhh
Confidence 88888888888888776 57888999999999999887 7777777888888888887776332211100 000 0000
Q ss_pred cccCCCCCCCCCCCcEEEccCCcCccCCCccccC-CCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcc
Q 047486 362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICS-LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD 440 (776)
Q Consensus 362 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 440 (776)
+.+. ........-..+.+..+..+.+..|.. ..++..--.+.+...+.-|..-+...++|++|++++|+|+++-+.
T Consensus 216 ~~ie---tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 216 NPIE---TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred chhh---cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 0000 000111111122222222222222211 111211112223333344443333334677777777777777777
Q ss_pred cccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486 441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506 (776)
Q Consensus 441 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 506 (776)
+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 777777777777777777666666777777777777777777777777777777777777776665
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.3e-21 Score=236.24 Aligned_cols=312 Identities=20% Similarity=0.246 Sum_probs=174.9
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCC
Q 047486 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240 (776)
Q Consensus 161 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 240 (776)
|+.|++.++.+. .+|..+ ...+|++|++++|.+.........+++|+.|+++++.....+|. +..+++|+.|++++|
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 555555544443 334333 23445555555554443322222334555555544433223332 444555555555554
Q ss_pred cCccccCccccCCCCCCCEEeccCC-CCCccccccccccccCCCCccEEeccCCC-CCCcchhhhCCcccceEecccCcc
Q 047486 241 NLSGAIRFDQFSKLKKLQFLDLSNN-SLLSFTSSANISIKYSLPSLKVLRFAYCN-ITEFPGFLRNSEELYLLDLSNNRI 318 (776)
Q Consensus 241 ~l~~~i~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~~~~L~~L~L~~n~l 318 (776)
.....+| ..+..+++|+.|++++| .++.++... .+++|+.|++++|. +..+|.. ..+|+.|++++|.+
T Consensus 668 ~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i------~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 668 SSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI------NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred CCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC------CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 4333333 33445555555555543 222222211 34555555555553 2233321 23556666666665
Q ss_pred ccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCC
Q 047486 319 QGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSS 398 (776)
Q Consensus 319 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 398 (776)
. .+|... .+++|++|.+.++....+... . ..+.......+++|+.|++++|...+.+|.+++++++
T Consensus 738 ~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~-~----------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 738 E-EFPSNL--RLENLDELILCEMKSEKLWER-V----------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred c-cccccc--cccccccccccccchhhcccc-c----------cccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 4 444332 345555555544322111000 0 0001111123467888888888877788888889999
Q ss_pred CCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478 (776)
Q Consensus 399 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 478 (776)
|+.|++++|...+.+|... .+ ++|+.|++++|.....+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|+++
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence 9999998886555777765 33 47899999887654444433 357888899998887 567788888899999998
Q ss_pred CCccCcccchhhcCCCCcCEEEccCCc
Q 047486 479 KNMISDSFPCWLGSLHELKILVLRSNR 505 (776)
Q Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~ 505 (776)
+|+-...+|..+..+++|+.+++++|.
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCc
Confidence 865545567777788888888888775
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2e-21 Score=234.63 Aligned_cols=305 Identities=20% Similarity=0.232 Sum_probs=213.1
Q ss_pred CCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcc-cccccc-ccccccCEEecc
Q 047486 283 PSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNF-MTHIEL-HPWMNITTLDLR 360 (776)
Q Consensus 283 ~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~l~ 360 (776)
++|+.|.+.++.+..+|..+ ...+|+.|++.+|++. .++... ..+++|+.|+++++. ++.++. ..+++|++|+++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 45666777666666666554 3566777777776665 444443 556667777776653 333332 234567777777
Q ss_pred CcccCCCCCCC---CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCcc
Q 047486 361 NNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH 437 (776)
Q Consensus 361 ~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 437 (776)
+|.....+|.. +++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+..
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~- 739 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE- 739 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-
Confidence 76655555433 5777888888876666677655 6788888888888665566642 2478888888888764
Q ss_pred CcccccCCCCccEEEcCCCcCc-------CCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccC
Q 047486 438 IHDTFANASHLRSLDLNSNKLE-------GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510 (776)
Q Consensus 438 ~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 510 (776)
+|..+ .+++|+.|.+.++... ...+.....+++|+.|++++|.....+|.+++++++|+.|++++|...+.+
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 34433 5677888888764321 122223344578999999998888888888999999999999988766666
Q ss_pred CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEe
Q 047486 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD 590 (776)
Q Consensus 511 ~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 590 (776)
|... .+++|+.|++++|.....+|.. ..+++.|+
T Consensus 819 P~~~---~L~sL~~L~Ls~c~~L~~~p~~-------------------------------------------~~nL~~L~ 852 (1153)
T PLN03210 819 PTGI---NLESLESLDLSGCSRLRTFPDI-------------------------------------------STNISDLN 852 (1153)
T ss_pred CCCC---CccccCEEECCCCCcccccccc-------------------------------------------ccccCEeE
Confidence 6543 5788999999988654444321 34678899
Q ss_pred cCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccC
Q 047486 591 FSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644 (776)
Q Consensus 591 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 644 (776)
|++|.++ .+|..+..+++|+.|+|++|+-...+|..+..++.|+.+++++|.-
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 9999998 6788899999999999998554446888888999999999999853
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=218.29 Aligned_cols=261 Identities=25% Similarity=0.308 Sum_probs=127.1
Q ss_pred cceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCcc
Q 047486 308 LYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG 387 (776)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 387 (776)
-..|+++++.++ .+|..+. ++|+.|++.+|+++.++ ..+++|++|++++|+++.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP----------------------~lp~~Lk~LdLs~N~Lts 256 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP----------------------ALPPELRTLEVSGNQLTS 256 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC----------------------CCCCCCcEEEecCCccCc
Confidence 445666666665 4555431 24555666666555543 223444444555544442
Q ss_pred CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhh
Q 047486 388 KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA 467 (776)
Q Consensus 388 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 467 (776)
+|.. .++|+.|++++|.+. .+|.. +.+|+.|++++|+++.. |. ..++|+.|++++|++++. |..
T Consensus 257 -LP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l-- 320 (788)
T PRK15387 257 -LPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL-- 320 (788)
T ss_pred -ccCc---ccccceeeccCCchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC--
Confidence 2221 234555555555554 33331 12455555555555432 21 124455555555555532 221
Q ss_pred cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486 468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM 547 (776)
Q Consensus 468 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l 547 (776)
..+|+.|++++|++++ +|.. ..+|+.|++++|++.+ +|.. .++|+.|++++|.+++ +|..
T Consensus 321 -p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l-------- 380 (788)
T PRK15387 321 -PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL-------- 380 (788)
T ss_pred -cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc--------
Confidence 1234455555555543 2221 1345555555555543 1211 2345555555555552 3321
Q ss_pred hhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcc
Q 047486 548 KNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 627 (776)
Q Consensus 548 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 627 (776)
...|+.|++++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 381 -----------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l 420 (788)
T PRK15387 381 -----------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML 420 (788)
T ss_pred -----------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc
Confidence 1234556666666653 3322 2456666666666653 4432
Q ss_pred ccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486 628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674 (776)
Q Consensus 628 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 674 (776)
. .+|+.|++++|+++ .+|..+..++.|+.|+|++|+|+|.+|.
T Consensus 421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 2 34556666666665 4566666666666666666666665543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.3e-21 Score=216.50 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=46.2
Q ss_pred ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccc
Q 047486 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 655 (776)
Q Consensus 585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 655 (776)
.|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 45667777777764 4543 235677788888877 677777788888888888888887777766443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-23 Score=203.84 Aligned_cols=149 Identities=26% Similarity=0.322 Sum_probs=123.8
Q ss_pred eccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEEC-CCCcCCc
Q 047486 358 DLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHL-KNNSLEG 436 (776)
Q Consensus 358 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L-~~n~l~~ 436 (776)
+.++-.++.....-++....++|..|+|+...+.+|..+++|+.||||+|+|+..-|++|.++. ++..|.+ ++|+|+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhh
Confidence 3333344433334467788999999999999999999999999999999999966677887776 5655554 5599999
Q ss_pred cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccc
Q 047486 437 HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY 507 (776)
Q Consensus 437 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 507 (776)
+..+.|.++.+|+.|.+.-|++.-+..+.|..+++|..|.+.+|.+..+....|..+..++.+.+..|++.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 98999999999999999999999888899999999999999999998666668999999999999998853
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.5e-19 Score=203.56 Aligned_cols=225 Identities=25% Similarity=0.335 Sum_probs=131.0
Q ss_pred CCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccce
Q 047486 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYL 310 (776)
Q Consensus 231 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~ 310 (776)
.|+.|++++|+++ .+|...+ ++|++|++++|.++.++... .++|+.|++++|.+..+|..+. .+|+.
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhh-------hccccEEECcCCccCcCChhHh--CCCCE
Confidence 4455555555554 3332211 34555555555544443321 2345555555555555554432 35666
Q ss_pred EecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCC
Q 047486 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP 390 (776)
Q Consensus 311 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (776)
|++++|+++ .+|..+. ++|+.|++++|+++.++.....+|+.|++++|.++......+++|+.|++++|.+++ +|
T Consensus 267 L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 267 LDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LP 341 (754)
T ss_pred EECcCCccC-ccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CC
Confidence 666666665 3444331 356666666666665544333456666666666664332334567777777777764 55
Q ss_pred ccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChh----h
Q 047486 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS----L 466 (776)
Q Consensus 391 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l 466 (776)
..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++.+ |..+. ..|+.|++++|+++ .+|.. +
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~ 411 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFR 411 (754)
T ss_pred hhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHh
Confidence 5443 57888888888877 5676542 3688888888888754 33332 35788888888887 33433 3
Q ss_pred hcCCCCcEEEcCCCccC
Q 047486 467 AKCIKLEVVNVGKNMIS 483 (776)
Q Consensus 467 ~~l~~L~~L~L~~n~l~ 483 (776)
..++.+..|++.+|+++
T Consensus 412 ~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hcCCCccEEEeeCCCcc
Confidence 44577788888888876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=7.4e-19 Score=198.06 Aligned_cols=118 Identities=30% Similarity=0.418 Sum_probs=53.9
Q ss_pred CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477 (776)
Q Consensus 398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 477 (776)
+|+.|++++|++. .+|..+. .+|+.|++++|++++. |..+. ++|+.|++++|.++. +|..+ .++|+.|++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~L 332 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEA 332 (754)
T ss_pred CCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CCccc--cccceeccc
Confidence 4555555555554 3444322 2455555555555432 22221 245555555555553 22222 245566666
Q ss_pred CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533 (776)
Q Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~ 533 (776)
++|.+++ +|..+. ++|+.|++++|++.. +|... .+.|+.|++++|.++
T Consensus 333 s~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 333 GENALTS-LPASLP--PELQVLDVSKNQITV-LPETL----PPTITTLDVSRNALT 380 (754)
T ss_pred cCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh----cCCcCEEECCCCcCC
Confidence 6665554 333221 455555555555442 22211 134555555555555
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.3e-18 Score=183.18 Aligned_cols=284 Identities=20% Similarity=0.136 Sum_probs=155.1
Q ss_pred EEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCC----ChhhHhhccCCccEEEcCCCCCCc------cCCCCCC
Q 047486 9 HLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLI----KPFSLLNLSSTMTDLDLGGTRIKG------NFPDDIF 78 (776)
Q Consensus 9 ~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~~L~~L~Ls~~~l~~------~~~~~l~ 78 (776)
.|+|+++.+. ...+...+..+++|+.|+++++.++.. ++..+... +++++++++++.+.+ .++..+.
T Consensus 2 ~l~L~~~~l~--~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLK--TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCccc--ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHH
Confidence 4677777775 245566677778888899988887553 24444555 678888888887652 1234456
Q ss_pred CCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccc----cccccccCC-CCCCEEEccCCcccCC---
Q 047486 79 RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG----SIPTSIGNL-TRATEIAFASNHFTGQ--- 150 (776)
Q Consensus 79 ~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~--- 150 (776)
++++|++|++++| .+.+..+..+.. .... ++|++|++++|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 79 ~~~~L~~L~l~~~-~~~~~~~~~~~~-l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 79 KGCGLQELDLSDN-ALGPDGCGVLES-LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred hcCceeEEEccCC-CCChhHHHHHHH-Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 6778888888777 555433332111 0011 337777777777663 223344555 6777777777776632
Q ss_pred -CchhhcCCCCCCEEEccCCcCCCC----CCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCcc
Q 047486 151 -LPHHVSGLSYLTTFDLSGNYFQGG----VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNS 225 (776)
Q Consensus 151 -~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 225 (776)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+... ..+...
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------------------~~l~~~ 216 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------------------SALAET 216 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------------------HHHHHH
Confidence 233455666777777777766632 22334445566666666665542110 011222
Q ss_pred ccCCCCCCEEECCCCcCccccCcc----ccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCc---
Q 047486 226 TFQLVNLTILDLSSNNLSGAIRFD----QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF--- 298 (776)
Q Consensus 226 ~~~l~~L~~L~Ls~n~l~~~i~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--- 298 (776)
+..+++|++|++++|.+.+..... .....+.|++|++++|.+++............+++|+++++++|.++.-
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 334455555555555554211100 0112355666666666543222111112222345666666666666532
Q ss_pred --chhhhCC-cccceEecccCc
Q 047486 299 --PGFLRNS-EELYLLDLSNNR 317 (776)
Q Consensus 299 --p~~l~~~-~~L~~L~L~~n~ 317 (776)
...+... +.|+.+++.+|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCC
Confidence 2233333 577777777664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=3.5e-18 Score=179.88 Aligned_cols=239 Identities=23% Similarity=0.228 Sum_probs=108.7
Q ss_pred cccCCCCCCEEEccCCcCcc------cCCchhhhcCCCccEEECCCCcCCccCcccccCCCC---ccEEEcCCCcCcCC-
Q 047486 392 SICSLSSLQYLSLSDNNLSG------TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASH---LRSLDLNSNKLEGP- 461 (776)
Q Consensus 392 ~~~~~~~L~~L~Ls~n~l~~------~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~- 461 (776)
.+...+.+++++++++.+.+ .++..+... ++|+.|++++|.+.+..+..+..+.. |++|++++|++++.
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH
Confidence 33444455555555554431 112222332 24555555555554433333333333 55555555555421
Q ss_pred ---CChhhhcC-CCCcEEEcCCCccCcc----cchhhcCCCCcCEEEccCCcccccCCCCC--CCcCCCCccEEeCCCCc
Q 047486 462 ---LPRSLAKC-IKLEVVNVGKNMISDS----FPCWLGSLHELKILVLRSNRFYGPLCNSN--ITFPFQALRIIDLSHNE 531 (776)
Q Consensus 462 ---~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~LdLs~n~ 531 (776)
+...+..+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+.+...... .....++|+.|++++|.
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 12233344 5556666666655522 22334445555555555555543110000 00123455566665555
Q ss_pred CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhcc-----
Q 047486 532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGN----- 606 (776)
Q Consensus 532 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~----- 606 (776)
+++.....+. .....++.|+.|++++|.+++.....+..
T Consensus 205 i~~~~~~~l~------------------------------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 205 LTDEGASALA------------------------------------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred cChHHHHHHH------------------------------------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 5421110000 00011345566666666665432222221
Q ss_pred CCCCCEEeCCCCcCcc----cCCccccccCCCcEEeccCccCcCC----Cchhhccc-cccccccCccCc
Q 047486 607 FKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGR----IPEQLLSV-TALALLNLSYNR 667 (776)
Q Consensus 607 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~ 667 (776)
.+.|+.|++++|.++. .+...+..+++|+.+|+++|.++.. ....+... +.|+.+++.+|+
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2566666666666651 2233444556666666666666633 33333333 456666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-17 Score=143.57 Aligned_cols=158 Identities=26% Similarity=0.455 Sum_probs=99.6
Q ss_pred CCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCccc
Q 047486 30 NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRE 109 (776)
Q Consensus 30 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~ 109 (776)
++.+.+.|.||+|.++.. |..++.+ .+|+.|++++|.++ .+|.+++.+++|+.|+++-| ++. .+|.. |+.
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmn-rl~-~lprg-----fgs 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN-RLN-ILPRG-----FGS 100 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchh-hhh-cCccc-----cCC
Confidence 344455566666666655 4456666 66777777766666 66666666777777766666 443 34544 333
Q ss_pred CCCCcEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 047486 110 LDLLSVLDIGFCNFTG-SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSI 188 (776)
Q Consensus 110 L~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 188 (776)
++.|++||+++|++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 3336677776666653 45666666666666777777666 56666677777777777766665 566666777777777
Q ss_pred EccCCcCCCcC
Q 047486 189 DLSKNMLNGPI 199 (776)
Q Consensus 189 ~l~~n~l~~~~ 199 (776)
.+.+|.++-.+
T Consensus 179 hiqgnrl~vlp 189 (264)
T KOG0617|consen 179 HIQGNRLTVLP 189 (264)
T ss_pred hcccceeeecC
Confidence 77777665433
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=9.5e-15 Score=164.76 Aligned_cols=118 Identities=36% Similarity=0.608 Sum_probs=105.1
Q ss_pred ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 664 (776)
Q Consensus 585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 664 (776)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceecCCCCCC--CCcccccccccccCCCCCCCCCCCC
Q 047486 665 YNRLWGRIPRGNQ--FNTFENDSYIGNIHLCGEPLTVRCS 702 (776)
Q Consensus 665 ~N~l~g~iP~~~~--~~~~~~~~~~~n~~l~g~pl~~~C~ 702 (776)
+|+++|.+|.... +.......+.+|..+||.|-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 1233455678999999877555564
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=8.8e-17 Score=139.68 Aligned_cols=149 Identities=26% Similarity=0.421 Sum_probs=84.7
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 192 (776)
++.|.||+|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+.+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 555666666666 45556666666666666666666 45666666666666666666665 5666666666666666666
Q ss_pred CcCCC--cCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486 193 NMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267 (776)
Q Consensus 193 n~l~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i 267 (776)
|++.. .+..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+| ..++.++.|++|.+.+|++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp-keig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP-KEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc-HHHHHHHHHHHHhccccee
Confidence 66553 1122222244555555555554 45555555666666666555554 334 3344444444444444443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=4.1e-11 Score=135.50 Aligned_cols=113 Identities=35% Similarity=0.543 Sum_probs=99.5
Q ss_pred CccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccc
Q 047486 521 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEI 600 (776)
Q Consensus 521 ~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 600 (776)
.++.|+|++|.+.|.+|..+ . .++.|+.|+|++|.++|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~---------------------------------------~L~~L~~L~Ls~N~l~g~i 458 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-S---------------------------------------KLRHLQSINLSGNSIRGNI 458 (623)
T ss_pred EEEEEECCCCCccccCCHHH-h---------------------------------------CCCCCCEEECCCCcccCcC
Confidence 47889999999999888653 1 1567899999999999999
Q ss_pred hhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccc-cccccccCccCcceecCC
Q 047486 601 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSYNRLWGRIP 673 (776)
Q Consensus 601 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP 673 (776)
|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+ ..+..+++++|+..+.+|
T Consensus 459 P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999998764 467789999997544444
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=5.9e-12 Score=122.89 Aligned_cols=191 Identities=20% Similarity=0.220 Sum_probs=94.6
Q ss_pred CCCCCEEeCCCCCCccc-cCChhHhhcCCCCCCEEeCCCccC---CCCChhhH-------hhccCCccEEEcCCCCCCcc
Q 047486 4 LSKLTHLDLSFCVLTIE-QRTFDLLASNLTKLSLLHLGATNM---SLIKPFSL-------LNLSSTMTDLDLGGTRIKGN 72 (776)
Q Consensus 4 l~~L~~L~Ls~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~---~~~~~~~~-------~~l~~~L~~L~Ls~~~l~~~ 72 (776)
+..+++++||+|.+... ...+...+.+.++|+..++++-.. ...+|+.+ ... ++|++|+||+|.+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC-PKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC-CceeEeeccccccCcc
Confidence 45677777777776421 123445566777777777775422 22234332 233 4777777777776544
Q ss_pred CCCC----CCCCCCCCEEeccCCCCcccc----CCCCCC----CCCcccCCCCcEEEccCCccccc----ccccccCCCC
Q 047486 73 FPDD----IFRLPNLQILFLNLNSQLTGY----LPKSNW----SSPLRELDLLSVLDIGFCNFTGS----IPTSIGNLTR 136 (776)
Q Consensus 73 ~~~~----l~~l~~L~~L~Ls~n~~~~~~----~p~~~~----~~~l~~L~~L~~L~Ls~n~l~~~----~~~~l~~l~~ 136 (776)
.+.. +.++..|++|.|.+| .+.-. +-..+. .+....-..|+++...+|++... +...|..++.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 3332 345677777777776 43310 000000 01112223366666666655432 1223444555
Q ss_pred CCEEEccCCcccCC----CchhhcCCCCCCEEEccCCcCCCC----CCccccCCCCCCEEEccCCcCC
Q 047486 137 ATEIAFASNHFTGQ----LPHHVSGLSYLTTFDLSGNYFQGG----VPSWLFTLPSLLSIDLSKNMLN 196 (776)
Q Consensus 137 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 196 (776)
|+.+.+..|.|... +..+|..+++|++|||..|.++.. +...+..+++|++|++++|.+.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 55665555554311 113345555555555555555421 1233344455555555555443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2e-11 Score=122.58 Aligned_cols=156 Identities=24% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCCcEEEccCCccccccc--ccccCCCCCCEEEccCCcccCCC--chhhcCCCCCCEEEccCCcCCCCCCcc-ccCCCCC
Q 047486 111 DLLSVLDIGFCNFTGSIP--TSIGNLTRATEIAFASNHFTGQL--PHHVSGLSYLTTFDLSGNYFQGGVPSW-LFTLPSL 185 (776)
Q Consensus 111 ~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L 185 (776)
++|+.+.|.++.... .+ .....|++++.|||+.|-+..-. ..-...+++|+.|+++.|.+....... -..+++|
T Consensus 121 kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 334444444444331 11 13334455555555554443211 122234455555555555443211111 1133444
Q ss_pred CEEEccCCcCCCc-C-CCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEecc
Q 047486 186 LSIDLSKNMLNGP-I-DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS 263 (776)
Q Consensus 186 ~~L~l~~n~l~~~-~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 263 (776)
+.|.++.|.++.. + ......++|+.|+|.+|...........-+..|+.|||++|.+...-.....+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 4455554444320 0 0011124444444444432212222222344444555554444322111223344444444444
Q ss_pred CCCC
Q 047486 264 NNSL 267 (776)
Q Consensus 264 ~n~i 267 (776)
.+.+
T Consensus 280 ~tgi 283 (505)
T KOG3207|consen 280 STGI 283 (505)
T ss_pred ccCc
Confidence 4443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=4.6e-10 Score=121.57 Aligned_cols=149 Identities=34% Similarity=0.479 Sum_probs=76.9
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 192 (776)
|+.|++++|++. .+|..++.+++|+.|++++|.++ .+|...+..+.|+.|++++|.+. .+|........|+++.+++
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 555555555555 33344555555555555555555 33433335555555555555555 3444334444455555555
Q ss_pred CcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486 193 NMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268 (776)
Q Consensus 193 n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~ 268 (776)
|.+...+........+..+.+.+|++. ..+..+..++.++.|++++|.++ .++. +..+.+++.|++++|.+.
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc--ccccCccCEEeccCcccc
Confidence 533222222222244555555555554 22455556666666666666665 4432 566666666666666543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.8e-11 Score=121.43 Aligned_cols=207 Identities=19% Similarity=0.193 Sum_probs=103.8
Q ss_pred CCccEEEcCCCCCCccCC--CCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccc-cC
Q 047486 57 STMTDLDLGGTRIKGNFP--DDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSI-GN 133 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l-~~ 133 (776)
++|+++.|.++.+. ..+ .....|++++.||||.| -+..--|.. .-...|++|+.|+++.|.+........ ..
T Consensus 121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~---~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRN-LFHNWFPVL---KIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhheeecCcccc-ccchhhhhhhCCcceeecchhh-hHHhHHHHH---HHHHhcccchhcccccccccCCccccchhh
Confidence 55666666655554 222 23344666666666665 332110000 002334446666666665542221111 24
Q ss_pred CCCCCEEEccCCcccCCCc-hhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcC--CCCCCCCCCcE
Q 047486 134 LTRATEIAFASNHFTGQLP-HHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQD 210 (776)
Q Consensus 134 l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~L~~ 210 (776)
+++|+.|.++.|.++.... .....+++|+.|+|..|............+..|++|+|++|++.... +....++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 5667777777777663322 22345677777777777533233333445666777777777665432 22233355666
Q ss_pred EEccCCcCCCC-CCcc-----ccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486 211 VRLEENEIRGT-IPNS-----TFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268 (776)
Q Consensus 211 L~L~~n~i~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~ 268 (776)
|+++.+.+... .|+. ...+++|++|+++.|++...-....+..+++|+.|.+..|.+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666555432 1222 2345666666666666642222234444555555555555543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=4.8e-10 Score=121.43 Aligned_cols=177 Identities=32% Similarity=0.425 Sum_probs=86.4
Q ss_pred CcEEEccCCcccccccccccCCC-CCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLT-RATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
++.|++.+|.++ .++......+ +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|...+..+.|+
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~----- 189 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN----- 189 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh-----
Confidence 555555555555 3333444442 5555555555544 33334445555555555555554 3333333444444
Q ss_pred CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486 192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT 271 (776)
Q Consensus 192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~ 271 (776)
.|++++|++. .+|........|+++.+++|.+. .++ ..+.++.++..+.+.+|++..++
T Consensus 190 ------------------~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~-~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 190 ------------------NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELL-SSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred ------------------heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecc-hhhhhcccccccccCCceeeecc
Confidence 4455555444 34443333444555555555322 111 33445555555555555543321
Q ss_pred cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCC
Q 047486 272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISK 324 (776)
Q Consensus 272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~ 324 (776)
.....+++++.|++++|.++.++. +....+++.|++++|.+....+.
T Consensus 249 -----~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 -----ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -----chhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 112244556666666666665555 56666777777777766644433
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=2e-11 Score=119.27 Aligned_cols=94 Identities=27% Similarity=0.288 Sum_probs=45.4
Q ss_pred cccCCCCCCEEECCCCcCccc---cCccccCCCCCCCEEeccCCCCCccccccccccc-cCCCCccEEeccCCCCCC---
Q 047486 225 STFQLVNLTILDLSSNNLSGA---IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIK-YSLPSLKVLRFAYCNITE--- 297 (776)
Q Consensus 225 ~~~~l~~L~~L~Ls~n~l~~~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~--- 297 (776)
.+..+++|++|||.+|-++.. .-...+..+++|++|++++|.+..-........+ ...|.|+.+.+.+|.++.
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 445566666666666655411 1113344555566666666654332221111111 134556666666665541
Q ss_pred --cchhhhCCcccceEecccCcc
Q 047486 298 --FPGFLRNSEELYLLDLSNNRI 318 (776)
Q Consensus 298 --lp~~l~~~~~L~~L~L~~n~l 318 (776)
+...+...+.|..|+|++|++
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 222344456666666666665
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=3.3e-11 Score=124.69 Aligned_cols=192 Identities=23% Similarity=0.289 Sum_probs=126.6
Q ss_pred CCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc-cccCEEecc
Q 047486 282 LPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW-MNITTLDLR 360 (776)
Q Consensus 282 l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~ 360 (776)
+.--...+++.|++.++|..+..+..|+.+.+..|.+. .+|... ..+..|.+++++.|+++..+...| --|+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 34444556666666666655555666666666666665 455554 556666666666666666655443 346666666
Q ss_pred CcccCCCCCC--CCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccC
Q 047486 361 NNRIQGSILV--PPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI 438 (776)
Q Consensus 361 ~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 438 (776)
+|+++..... ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..+ .|..||++.|++. .+
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-ec
Confidence 6666532221 3566677777777776 56777888888888888888887 778777754 3888888888887 56
Q ss_pred cccccCCCCccEEEcCCCcCcCCCChhhhc---CCCCcEEEcCCCc
Q 047486 439 HDTFANASHLRSLDLNSNKLEGPLPRSLAK---CIKLEVVNVGKNM 481 (776)
Q Consensus 439 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~ 481 (776)
|..|..++.|++|.|.+|.+. ..|..+.- ..=-++|+..-++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 778888888888888888887 45544432 2234556665553
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1e-10 Score=111.44 Aligned_cols=125 Identities=28% Similarity=0.345 Sum_probs=59.1
Q ss_pred CCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccC
Q 047486 185 LLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN 264 (776)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~ 264 (776)
|+++|+++|.++.........+.++.|+++.|.+.. + ..+..+++|+.||||+|.++ .+. ++-.++.+++.|.++.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhh-hhHhhhcCEeeeehhh
Confidence 333444444333333333333444444444444431 1 12444555555555555554 222 3334455555555555
Q ss_pred CCCCccccccccccccCCCCccEEeccCCCCCCcc--hhhhCCcccceEecccCccc
Q 047486 265 NSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQ 319 (776)
Q Consensus 265 n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~L~~n~l~ 319 (776)
|.|.++++.- .+-+|..|++++|+|..+. ..++++|.|+.+.|.+|.+.
T Consensus 362 N~iE~LSGL~------KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIETLSGLR------KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhhhhhH------hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5544444322 3445555555555555443 24556666666666666655
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.9e-10 Score=109.65 Aligned_cols=135 Identities=25% Similarity=0.276 Sum_probs=80.6
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 236 (776)
..+.|+++||++|.|+ .+.++..-.|.++.|++++|.+..... .+.+++|+.|+|++|.++ .+..+-..+-+++.|.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 3345566666666655 445555555666666666665554333 333366666666666655 3334444566677777
Q ss_pred CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch
Q 047486 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG 300 (776)
Q Consensus 237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~ 300 (776)
|++|.+. .+ ..+.++-+|..||+++|+|..+... .....+|.|+.+.+.+|.+..+++
T Consensus 359 La~N~iE-~L--SGL~KLYSLvnLDl~~N~Ie~ldeV---~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIE-TL--SGLRKLYSLVNLDLSSNQIEELDEV---NHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHh-hh--hhhHhhhhheeccccccchhhHHHh---cccccccHHHHHhhcCCCccccch
Confidence 7777665 32 3456666677777777776554432 334467778888888887776665
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=7.5e-10 Score=102.00 Aligned_cols=105 Identities=30% Similarity=0.438 Sum_probs=25.9
Q ss_pred CCCcEEEccCCcCCCCCCcccc-CCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCC
Q 047486 206 NSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPS 284 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~ 284 (776)
.++++|+|++|.|+. + +.+. .+.+|+.|++++|.++ .+ ..+..++.|++|++++|.|+++.... ...+|+
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I~~i~~~l----~~~lp~ 89 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRISSISEGL----DKNLPN 89 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHH----HHH-TT
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCCCccccch----HHhCCc
Confidence 455666666666652 2 2333 3556666666666665 33 23555566666666666655443211 113455
Q ss_pred ccEEeccCCCCCCcc--hhhhCCcccceEecccCccc
Q 047486 285 LKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQ 319 (776)
Q Consensus 285 L~~L~l~~n~l~~lp--~~l~~~~~L~~L~L~~n~l~ 319 (776)
|++|++++|.|..+. ..+..+++|+.|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555555555554433 23444555555555555544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=6.2e-10 Score=102.53 Aligned_cols=128 Identities=30% Similarity=0.282 Sum_probs=34.3
Q ss_pred cCCCCCCEEEccCCcCCCCCCcccc-CCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCE
Q 047486 156 SGLSYLTTFDLSGNYFQGGVPSWLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI 234 (776)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 234 (776)
.+...+++|+|++|.|+. + +.++ .+.+|+.|++++|.++... .+..++.|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-------------------------~l~~L~~L~~ 68 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-------------------------GLPGLPRLKT 68 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-------------------------T----TT--E
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-------------------------CccChhhhhh
Confidence 344456666666666652 2 2233 3555666666666555332 2334445555
Q ss_pred EECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch----hhhCCcccce
Q 047486 235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG----FLRNSEELYL 310 (776)
Q Consensus 235 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~----~l~~~~~L~~ 310 (776)
|++++|+++ .+.......+++|++|++++|+|.++... .....+++|++|++.+|.++..+. .+..+|+|+.
T Consensus 69 L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l---~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 69 LDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNEL---EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp EE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCC---GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred cccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHh---HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 555555544 33211112345555555555554433321 223345555555555555554432 3566777777
Q ss_pred Eecc
Q 047486 311 LDLS 314 (776)
Q Consensus 311 L~L~ 314 (776)
||-.
T Consensus 145 LD~~ 148 (175)
T PF14580_consen 145 LDGQ 148 (175)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 7654
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=3.3e-11 Score=124.70 Aligned_cols=170 Identities=25% Similarity=0.334 Sum_probs=86.3
Q ss_pred CEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCc
Q 047486 138 TEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENE 217 (776)
Q Consensus 138 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 217 (776)
...+++.|++. .+|..+..+..|+.+.+..|.+. .+|.++.++..|++++++.|+++..+..... --|+.|.+++|+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEEecCc
Confidence 33444444444 34444444444444444444444 4444444444455555554444432222211 234555555555
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCC
Q 047486 218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297 (776)
Q Consensus 218 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 297 (776)
++ .+|+.++....|..||.+.|.+. .++ ..+..+.+|+.|.+..|++..++.+. ..-.|..||++.|++..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slp-sql~~l~slr~l~vrRn~l~~lp~El------~~LpLi~lDfScNkis~ 225 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLP-SQLGYLTSLRDLNVRRNHLEDLPEEL------CSLPLIRLDFSCNKISY 225 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hch-HHhhhHHHHHHHHHhhhhhhhCCHHH------hCCceeeeecccCceee
Confidence 54 55555555556666666666555 444 34555555555555555555544433 12235555555555555
Q ss_pred cchhhhCCcccceEecccCccc
Q 047486 298 FPGFLRNSEELYLLDLSNNRIQ 319 (776)
Q Consensus 298 lp~~l~~~~~L~~L~L~~n~l~ 319 (776)
+|-.|.++..|++|.|.+|.++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC
Confidence 6655666666666666666554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=2.3e-09 Score=123.74 Aligned_cols=254 Identities=19% Similarity=0.276 Sum_probs=140.5
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR 136 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~ 136 (776)
...+.+.+-+|.+. .++.+. .++.|++|-+..|......++..+ |..++.|++|||++|.--+.+|..++++-+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 46677777666665 344333 345788888877721122333322 556666888888887766678888888888
Q ss_pred CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcC---CCCCCCCCCcEEEc
Q 047486 137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI---DLFQLPNSLQDVRL 213 (776)
Q Consensus 137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~L 213 (776)
||+|+++++.+. .+|..+.+++.|.+|++..+.-...+|.....+++|++|.+......... .....+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 888888888887 67888888888888888877765556666667888888887765422111 11122244444443
Q ss_pred cCCcCCCCCCccccCCCCCC----EEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccccccccc-ccC-CCCccE
Q 047486 214 EENEIRGTIPNSTFQLVNLT----ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISI-KYS-LPSLKV 287 (776)
Q Consensus 214 ~~n~i~~~~~~~~~~l~~L~----~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~-~~~-l~~L~~ 287 (776)
..... .+-..+..++.|. .+.+.++... .. ...+..+.+|+.|.+.++.+.+......... ... ++++..
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-ee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 22221 0111122222222 2222222222 11 1455666777777777776543222110000 001 334455
Q ss_pred EeccCCCCCCcchhhhCCcccceEecccCccccc
Q 047486 288 LRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGR 321 (776)
Q Consensus 288 L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~ 321 (776)
+.+.+|.....+.|....++|+.|.+..+...+.
T Consensus 752 ~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 752 VSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHhhccccccccchhhccCcccEEEEeccccccc
Confidence 5555554444445555566677777766655433
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.1e-09 Score=82.87 Aligned_cols=59 Identities=36% Similarity=0.546 Sum_probs=28.8
Q ss_pred ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCcc
Q 047486 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643 (776)
Q Consensus 585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 643 (776)
.|+.|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555554444444455555555555555544444444555555555555444
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.1e-09 Score=126.41 Aligned_cols=271 Identities=21% Similarity=0.203 Sum_probs=154.6
Q ss_pred CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCC--CCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCccc
Q 047486 32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTR--IKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRE 109 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~--l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~ 109 (776)
...+...+-++.+... +... .. +.|++|-+..|. +....++.|..++.|++|||++| .-.+.+|.. +++
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~~-~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~-----I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGSS-EN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSS-----IGE 593 (889)
T ss_pred hheeEEEEeccchhhc-cCCC-CC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-CccCcCChH-----Hhh
Confidence 4556666666655443 2122 12 467788777775 43233344666888888888887 555677776 555
Q ss_pred CCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCC--CCCCccccCCCCCCE
Q 047486 110 LDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ--GGVPSWLFTLPSLLS 187 (776)
Q Consensus 110 L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~ 187 (776)
|.+||+|+++++.+. .+|..+++++.|.+|++..+.....+|.....+.+|++|.+...... ...-..+.++.+|+.
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 556888888888888 78888888888888888877665556777777888888888765422 222233455555665
Q ss_pred EEccCCcCCCcCCCC---CCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCC------CCCCC
Q 047486 188 IDLSKNMLNGPIDLF---QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSK------LKKLQ 258 (776)
Q Consensus 188 L~l~~n~l~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~------l~~L~ 258 (776)
+...........+.. ...+..+.+.+.++... ..+..+..+.+|+.|.+.++.+. .+....... ++++.
T Consensus 673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~-e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS-EIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred heeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc-hhhcccccccchhhhHHHHH
Confidence 555433321001111 11112223333332222 34556677888999999888775 222122111 22233
Q ss_pred EEeccCCCCCccccccccccccCCCCccEEeccCCCCCC-cchhhhCCcccceEecccCccc
Q 047486 259 FLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE-FPGFLRNSEELYLLDLSNNRIQ 319 (776)
Q Consensus 259 ~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~~~~L~~L~L~~n~l~ 319 (776)
.+.+.++.. +... ....-.++|+.|++..|...+ +.+....+..+..+-+..+.+.
T Consensus 751 ~~~~~~~~~---~r~l--~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 751 KVSILNCHM---LRDL--TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHhhcccc---cccc--chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 333333321 1111 111246899999999997653 3345555555655555555444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.2e-09 Score=81.13 Aligned_cols=61 Identities=43% Similarity=0.562 Sum_probs=57.5
Q ss_pred CCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcc
Q 047486 608 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668 (776)
Q Consensus 608 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 668 (776)
++|++|++++|+++...+..|.++++|++|++++|+++...|.+|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988788999999999999999999988888999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.7e-10 Score=120.86 Aligned_cols=193 Identities=28% Similarity=0.272 Sum_probs=79.1
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCEEEc
Q 047486 112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP-SWLFTLPSLLSIDL 190 (776)
Q Consensus 112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l 190 (776)
+|++|++++|.|+... .+..++.|+.|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++
T Consensus 119 ~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l 193 (414)
T KOG0531|consen 119 NLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL 193 (414)
T ss_pred cchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence 3444444444444321 233344444555555544421 223334445555555554442222 1 234444555555
Q ss_pred cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCC--CCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486 191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN--LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268 (776)
Q Consensus 191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~ 268 (776)
.+|.+......... ..+..+++..|.++..- .+..+.. |+.+++++|.+. .++ ..+..+..+..+++..|.+.
T Consensus 194 ~~n~i~~i~~~~~~-~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~-~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 194 GGNSIREIEGLDLL-KKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSP-EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCCchhcccchHHH-HHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-ccc-ccccccccccccchhhcccc
Confidence 55544322211111 22233344444443111 1111222 455555555544 221 23444555555555555543
Q ss_pred ccccccccccccCCCCccEEeccCCCCCC---c-ch-hhhCCcccceEecccCcccc
Q 047486 269 SFTSSANISIKYSLPSLKVLRFAYCNITE---F-PG-FLRNSEELYLLDLSNNRIQG 320 (776)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l-p~-~l~~~~~L~~L~L~~n~l~~ 320 (776)
..... ...+.+..+....+.+.. . .. .....+.++...+..|.+..
T Consensus 269 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 269 NLEGL------ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccc------cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 33221 133344444444444321 1 11 13345566666666665543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=6.5e-10 Score=120.37 Aligned_cols=225 Identities=27% Similarity=0.278 Sum_probs=106.1
Q ss_pred ccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCC
Q 047486 393 ICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL 472 (776)
Q Consensus 393 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 472 (776)
+..+++|+.|++.+|.+. .+...+..+. +|++|++++|.|+.+. .+..++.|+.|++++|.|+.. ..+..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhh-cchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhh
Confidence 444555555555555554 3322222232 4555555555555432 233444455666666655533 223335555
Q ss_pred cEEEcCCCccCcccc-hhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhcc
Q 047486 473 EVVNVGKNMISDSFP-CWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551 (776)
Q Consensus 473 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~ 551 (776)
+.+++++|.+....+ . ...+.+++.+++.+|.+...... ..+..+..+++..|.++..-+...
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~~----------- 228 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLNE----------- 228 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCccc-----------
Confidence 566666665554433 2 34455555555555554321111 112223333444444431111000
Q ss_pred ccCceecccCccccceEEEEeccchhhHHHhhc--ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccc
Q 047486 552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILV--MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 629 (776)
+. .|+.+++++|++.. ++..+..+..+..|+++.|++... ..+.
T Consensus 229 -------------------------------~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~ 274 (414)
T KOG0531|consen 229 -------------------------------LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLE 274 (414)
T ss_pred -------------------------------chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--cccc
Confidence 01 24556666666652 224455566666666666666543 2234
Q ss_pred ccCCCcEEeccCccCcCC---Cchh-hccccccccccCccCcceecCC
Q 047486 630 NMTALESLDLSFNKLDGR---IPEQ-LLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~iP 673 (776)
....+..+..+.|.+... .... ......+..+.+.+|+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 445556666666665421 1111 3344556666666666654433
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.7e-09 Score=103.33 Aligned_cols=176 Identities=20% Similarity=0.188 Sum_probs=112.1
Q ss_pred CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCC-CCcc-CCCCCCCCCCC
Q 047486 6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTR-IKGN-FPDDIFRLPNL 83 (776)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~-l~~~-~~~~l~~l~~L 83 (776)
+|++||||+..|+. .++-..++.|.+|+.|.|.++++.+.+...+++- .+|+.|+|+.+. ++.. ..--+.+|+.|
T Consensus 186 Rlq~lDLS~s~it~--stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV--STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeH--HHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhH
Confidence 57888888887762 4555677888888888888888888888888887 888889888764 3321 11234678888
Q ss_pred CEEeccCCCCccccC-CCCCCC--CCcccCCCCcEEEccCCccc---ccccccccCCCCCCEEEccCCc-ccCCCchhhc
Q 047486 84 QILFLNLNSQLTGYL-PKSNWS--SPLRELDLLSVLDIGFCNFT---GSIPTSIGNLTRATEIAFASNH-FTGQLPHHVS 156 (776)
Q Consensus 84 ~~L~Ls~n~~~~~~~-p~~~~~--~~l~~L~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~ 156 (776)
+.|++++| ...... ...+.. .. |+.|+++++.-. ..+..-...|++|..|||++|. ++......|.
T Consensus 263 ~~LNlsWc-~l~~~~Vtv~V~hise~------l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 263 DELNLSWC-FLFTEKVTVAVAHISET------LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hhcCchHh-hccchhhhHHHhhhchh------hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 88888888 443222 112222 33 777788776421 1222223467777788877754 3333344566
Q ss_pred CCCCCCEEEccCCcCCCCCCcc---ccCCCCCCEEEccCC
Q 047486 157 GLSYLTTFDLSGNYFQGGVPSW---LFTLPSLLSIDLSKN 193 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n 193 (776)
+++.|++|.++.|.. .+|.. +...+.|.+|++.++
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 777777777777763 44543 334556666665544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=3.6e-09 Score=112.77 Aligned_cols=125 Identities=26% Similarity=0.299 Sum_probs=61.5
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCc-cccCCCCCCEEEcc
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS-WLFTLPSLLSIDLS 191 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~ 191 (776)
|.+.++++|.++ .+..++.-++.|+.|+|++|+++.. ..+..|++|++|||++|.+. .+|. ....+. |+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 555555666555 3444555555666666666665532 24555556666666666555 2221 122222 4444444
Q ss_pred CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486 192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267 (776)
Q Consensus 192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i 267 (776)
+|.++.. ..+.++.+|+.||+++|-+.+.-....++.+..|+.|.|.+|++
T Consensus 241 nN~l~tL-------------------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL-------------------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh-------------------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4444322 23445555555555555544332223344445555555555554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.8e-08 Score=107.56 Aligned_cols=179 Identities=27% Similarity=0.286 Sum_probs=110.4
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCCccccCC-CCCCEEEccCCcCC----------C-cCCCCCCCCCCcEEEccCCcCC
Q 047486 152 PHHVSGLSYLTTFDLSGNYFQGGVPSWLFTL-PSLLSIDLSKNMLN----------G-PIDLFQLPNSLQDVRLEENEIR 219 (776)
Q Consensus 152 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~----------~-~~~~~~~~~~L~~L~L~~n~i~ 219 (776)
|-.+..+..|++|.+.++.+.. ...+..+ ..|++|--. |.+. | ....+.. ..|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~W-n~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVW-NKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhh-hhHhhhhcchhhHH
Confidence 5567788899999999988762 1111111 123332211 1111 0 1111122 45666777777776
Q ss_pred CCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc
Q 047486 220 GTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299 (776)
Q Consensus 220 ~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp 299 (776)
.+..++.-++.|+.|+|++|+++ .+ ..+..|++|++|||++|.++.++... ...+ .|+.|.+++|.++++-
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~----~~gc-~L~~L~lrnN~l~tL~ 248 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLS----MVGC-KLQLLNLRNNALTTLR 248 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccc----hhhh-hheeeeecccHHHhhh
Confidence 55566666778888888888876 33 46777888888888888776665432 1122 3778888888777664
Q ss_pred hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccc
Q 047486 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT 344 (776)
Q Consensus 300 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 344 (776)
+ +.++.+|+.||+++|-+.+.-.-...+.+..|+.|.|.+|.+-
T Consensus 249 g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 G-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3 5677788888888887765443344456677778888877654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.3e-08 Score=93.96 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=97.8
Q ss_pred CCccEEECCCCcCCc-cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcccc-hhhcCCCCcCE
Q 047486 422 TELITLHLKNNSLEG-HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSFP-CWLGSLHELKI 498 (776)
Q Consensus 422 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~ 498 (776)
+.|+++||++..|+. .....+..|.+|+.|.|.++++.+.+...++...+|+.|+|+.+ .++.... -.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457777777776652 22344566777888888888877777777777778888887764 3332111 23456777777
Q ss_pred EEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhh
Q 047486 499 LVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQ 578 (776)
Q Consensus 499 L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (776)
|+++.|.+...........--+.|..|+++++.=. +. +.+.-.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-------l~------------------------------~sh~~t 307 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-------LQ------------------------------KSHLST 307 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-------hh------------------------------hhHHHH
Confidence 77776665543322221112233444444433211 00 000111
Q ss_pred HHHhhcceeEEecCCCc-ccccchhhhccCCCCCEEeCCCCcCcccCCccc---cccCCCcEEeccCc
Q 047486 579 LQKILVMFRAMDFSRNR-FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF---ENMTALESLDLSFN 642 (776)
Q Consensus 579 ~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N 642 (776)
..+.++++..||||.|. ++.....+|..++.|++|.++.|.. ++|..+ ...++|.+||+-++
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 22336666777776554 3333344555666666666666643 445433 33455555555443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.4e-08 Score=91.64 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=101.2
Q ss_pred CCCcEEEccCCcccc--cccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCE
Q 047486 111 DLLSVLDIGFCNFTG--SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLS 187 (776)
Q Consensus 111 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~ 187 (776)
+.++.+||.+|.|+. .+..-+.+++.|++|+++.|.+...+...-..+.+|++|-|.+..+.- .....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 347778888887774 233445678888888888888774332211456778888888877652 23344566777788
Q ss_pred EEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCc-cccCCCCCCCEEeccCCC
Q 047486 188 IDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNS 266 (776)
Q Consensus 188 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~ 266 (776)
|.++.|.+. .+.+..+.+...- +.+++|.+-.|........ ..-.-++++..+.+..|+
T Consensus 151 lHmS~N~~r-------------q~n~Dd~c~e~~s-------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 151 LHMSDNSLR-------------QLNLDDNCIEDWS-------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhccchhh-------------hhccccccccccc-------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 877776432 2222332222110 1222222222211100000 001223455555666665
Q ss_pred CCccccccccccccCCCCccEEeccCCCCCCcc--hhhhCCcccceEecccCccccc
Q 047486 267 LLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQGR 321 (776)
Q Consensus 267 i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~L~~n~l~~~ 321 (776)
+.+.... ..+..+|.+.-|+++.++|..+. +.+..++.|..|.++++.+.+.
T Consensus 211 lK~~s~e---k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 211 LKTESSE---KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ccchhhc---ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 5444332 22334556666666666666554 4566777777777777776543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1.8e-07 Score=79.24 Aligned_cols=112 Identities=26% Similarity=0.402 Sum_probs=83.3
Q ss_pred cceeEEecCCCcccccchhhhcc-CCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccccccccc
Q 047486 584 VMFRAMDFSRNRFHGEIPEVLGN-FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 662 (776)
Q Consensus 584 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 662 (776)
..|+.++|++|.+.. .|+.|.. .+.+++|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 456788899999884 4555544 458899999999998 78888999999999999999998 6677777789999999
Q ss_pred CccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047486 663 LSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSND 704 (776)
Q Consensus 663 ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~ 704 (776)
..+|.+. +||.+....+..+. ..+..+||...|...
T Consensus 130 s~~na~~-eid~dl~~s~~~al-----~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPAL-----IKLGNEPLGDETKKK 165 (177)
T ss_pred CCCCccc-cCcHHHhccccHHH-----HHhcCCcccccCccc
Confidence 8888775 67765333233332 334446777778763
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=7.7e-07 Score=75.52 Aligned_cols=83 Identities=28% Similarity=0.449 Sum_probs=52.8
Q ss_pred eeEEecCCCcccccchhh---hccCCCCCEEeCCCCcCcccCCccc-cccCCCcEEeccCccCcCCCchhhccccccccc
Q 047486 586 FRAMDFSRNRFHGEIPEV---LGNFKSLKVLNLSHNSLTGNIPVSF-ENMTALESLDLSFNKLDGRIPEQLLSVTALALL 661 (776)
Q Consensus 586 L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 661 (776)
+-.+|||++.+. .++.. +.....|+..+|++|.+. ..|..| ...+.++.|+|++|+|+ .+|+.++.++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 345666666665 23333 334455666677777777 344444 33457777777777777 566677777777777
Q ss_pred cCccCcceec
Q 047486 662 NLSYNRLWGR 671 (776)
Q Consensus 662 ~ls~N~l~g~ 671 (776)
|++.|++...
T Consensus 106 Nl~~N~l~~~ 115 (177)
T KOG4579|consen 106 NLRFNPLNAE 115 (177)
T ss_pred ccccCccccc
Confidence 7777777643
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.06 E-value=3.2e-07 Score=86.88 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCc--c----hhhhCCcccceEecccCccccccCC--
Q 047486 253 KLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF--P----GFLRNSEELYLLDLSNNRIQGRISK-- 324 (776)
Q Consensus 253 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--p----~~l~~~~~L~~L~L~~n~l~~~~~~-- 324 (776)
.-|.|+.++...|++...+.......+..-..|+.+.+.+|.|..- . -.+..+.+|+.||+.+|.++-....
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 3456666666666654443332212222234667777777766411 1 1244567777777777776522111
Q ss_pred -CcccCCccCCeEeCcCcccccccc---------ccccccCEEeccCcccC
Q 047486 325 -SDSPGWKSLIDLDLSNNFMTHIEL---------HPWMNITTLDLRNNRIQ 365 (776)
Q Consensus 325 -~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~ 365 (776)
.....++.|+.|.+.+|-++.-.. ..+++|..|...+|...
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 112344556777777666554432 12355555555555544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=5.8e-07 Score=85.20 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=21.1
Q ss_pred CCCCCEEECCCCcCccccCc------cccCCCCCCCEEeccCCCCCc
Q 047486 229 LVNLTILDLSSNNLSGAIRF------DQFSKLKKLQFLDLSNNSLLS 269 (776)
Q Consensus 229 l~~L~~L~Ls~n~l~~~i~~------~~~~~l~~L~~L~Ls~n~i~~ 269 (776)
.++|..|-..+|...+.+-. ..-..+|-|..|.+.+|.+..
T Consensus 271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 45555555555544332211 112345666677777777543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.7e-06 Score=83.15 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=46.4
Q ss_pred CCCCCEEEccCCcccCCC-chhh-cCCCCCCEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCCCcCCCCC-CCCCC
Q 047486 134 LTRATEIAFASNHFTGQL-PHHV-SGLSYLTTFDLSGNYFQG--GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQ-LPNSL 208 (776)
Q Consensus 134 l~~L~~L~L~~n~l~~~~-p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L 208 (776)
...+..|.+.++.+.... ...| ..++.++.+||.+|.++. .+...+.++|.|+.|+++.|++...+.... ...+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 334445555555544221 1122 245677888888887763 334445677778888888777765444331 11445
Q ss_pred cEEEccCCcC
Q 047486 209 QDVRLEENEI 218 (776)
Q Consensus 209 ~~L~L~~n~i 218 (776)
++|.|.+..+
T Consensus 124 ~~lVLNgT~L 133 (418)
T KOG2982|consen 124 RVLVLNGTGL 133 (418)
T ss_pred EEEEEcCCCC
Confidence 5555544433
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=8e-06 Score=56.17 Aligned_cols=36 Identities=39% Similarity=0.663 Sum_probs=19.4
Q ss_pred CCCEEeCCCCcCcccCCccccccCCCcEEeccCccCc
Q 047486 609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645 (776)
Q Consensus 609 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 645 (776)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 34444556666666666666555
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=70.96 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=5.8
Q ss_pred CCCCCEEECCCCcCc
Q 047486 229 LVNLTILDLSSNNLS 243 (776)
Q Consensus 229 l~~L~~L~Ls~n~l~ 243 (776)
++.|.+|.+.+|+|+
T Consensus 63 l~rL~tLll~nNrIt 77 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRIT 77 (233)
T ss_pred ccccceEEecCCcce
Confidence 333333333333333
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=7e-05 Score=77.94 Aligned_cols=157 Identities=20% Similarity=0.267 Sum_probs=98.6
Q ss_pred hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486 28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL 107 (776)
Q Consensus 28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l 107 (776)
+..+.+++.|++++|.+... | .+|++|++|.+++|.--..+|+.+ .++|++|++++|..+ ..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP~s------ 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLPES------ 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccccc------
Confidence 45578999999999977765 5 356789999998864434566544 258999999988333 345544
Q ss_pred ccCCCCcEEEccCCccc--ccccccccCCCCCCEEEccCCccc--CCCchhhcCC-CCCCEEEccCCcCCCCCCccccCC
Q 047486 108 RELDLLSVLDIGFCNFT--GSIPTSIGNLTRATEIAFASNHFT--GQLPHHVSGL-SYLTTFDLSGNYFQGGVPSWLFTL 182 (776)
Q Consensus 108 ~~L~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l 182 (776)
|+.|+++.+... +.+|. +|+.|.+.+++.. ...|. .+ ++|++|++++|... ..|..+.
T Consensus 114 -----Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred -----cceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--
Confidence 888888766543 13343 4566766443211 11111 12 57999999988865 4454333
Q ss_pred CCCCEEEccCCcCCC-cCCCCCCCCCCcEEEccCC
Q 047486 183 PSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEEN 216 (776)
Q Consensus 183 ~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n 216 (776)
.+|+.|+++.+.... .+.....++++ .|++.++
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 589999998764332 22222344566 7777654
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=1.1e-06 Score=88.58 Aligned_cols=229 Identities=18% Similarity=0.088 Sum_probs=112.5
Q ss_pred CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCcc-CCCCChhhHhhccCCccEEEcCCC-CCCccCCC-CCCCCCC
Q 047486 6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATN-MSLIKPFSLLNLSSTMTDLDLGGT-RIKGNFPD-DIFRLPN 82 (776)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~~L~~L~Ls~~-~l~~~~~~-~l~~l~~ 82 (776)
.|+.|.+.++.-. ....+-....+++++++|++.+|. ++......+++..+.|++|+|..| .++...-. -...+++
T Consensus 139 ~lk~LSlrG~r~v-~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAV-GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccC-CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5677777776421 113344455678888888887775 344444555554477888888774 34432222 1234778
Q ss_pred CCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccc----cCCCCCCEEEccCCc-ccCCCc-hhhc
Q 047486 83 LQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSI----GNLTRATEIAFASNH-FTGQLP-HHVS 156 (776)
Q Consensus 83 L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~p-~~~~ 156 (776)
|++|++|++..+++.--..+ .++++.++.+.+.+|.-.+ -+.+ +.+..+..+++.++. ++...- ..=.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~----~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQAL----QRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHHhhhccCchhhcCcchHH----hccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 88888888855554211111 3344445555555543221 0111 233445555655553 222111 1113
Q ss_pred CCCCCCEEEccCCcCCC-CCCccc-cCCCCCCEEEccCCcCCCcC---CCCCCCCCCcEEEccCCcCCC--CCCccccCC
Q 047486 157 GLSYLTTFDLSGNYFQG-GVPSWL-FTLPSLLSIDLSKNMLNGPI---DLFQLPNSLQDVRLEENEIRG--TIPNSTFQL 229 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l 229 (776)
++..|++++.+++.-.+ ..-.++ .++.+|+.|.++.++--+.. .....++.|+.+++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45667777777654321 111222 34667777777766532111 111233555555555543321 111112235
Q ss_pred CCCCEEECCCCc
Q 047486 230 VNLTILDLSSNN 241 (776)
Q Consensus 230 ~~L~~L~Ls~n~ 241 (776)
+.|++|.++++.
T Consensus 372 ~~lr~lslshce 383 (483)
T KOG4341|consen 372 PRLRVLSLSHCE 383 (483)
T ss_pred chhccCChhhhh
Confidence 555555555543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=3.3e-05 Score=53.15 Aligned_cols=37 Identities=32% Similarity=0.617 Sum_probs=32.0
Q ss_pred ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcc
Q 047486 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG 622 (776)
Q Consensus 585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 622 (776)
+|++|++++|+|+ .+|+.+++|++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6799999999999 567789999999999999999984
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1.6e-05 Score=90.11 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=60.5
Q ss_pred CCccEEEcCCCCCCc-cCCCCCC-CCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCC
Q 047486 57 STMTDLDLGGTRIKG-NFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNL 134 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~-~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l 134 (776)
.+|++|++++...-. .-|..++ .+|+|++|.+++- .+... +|. .-+.++++|+.||+|+++++.. ..++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~---dF~-~lc~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDND---DFS-QLCASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecch---hHH-HHhhccCccceeecCCCCccCc--HHHhcc
Confidence 467777777654321 1223333 3677777777664 22211 011 1134555577777777777643 566777
Q ss_pred CCCCEEEccCCcccC-CCchhhcCCCCCCEEEccCCcCC
Q 047486 135 TRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQ 172 (776)
Q Consensus 135 ~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~ 172 (776)
++|+.|.+.+=.+.. ..-..+.++++|++||+|.....
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 777777766655442 22234556777777777765543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.0002 Score=74.61 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=16.6
Q ss_pred CCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC
Q 047486 446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN 480 (776)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 480 (776)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666544 2232222 35666666554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00018 Score=65.84 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486 206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i 267 (776)
+.|.+|.+.+|+|+..-|.--.-+++|+.|.|.+|++...-....+..|++|++|.+-+|++
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 55555555555555444433334556667777776665333334556666666666666664
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.52 E-value=3e-06 Score=85.55 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=26.2
Q ss_pred CCCcEEEccCCcCCCCCC--ccccCCCCCCEEECCCCcCccccCc-cccCCCCCCCEEeccCC
Q 047486 206 NSLQDVRLEENEIRGTIP--NSTFQLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNN 265 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n 265 (776)
..|+.|.+.++.-.+.-+ .....++++++|.+.++........ ..-..+++|++|++..|
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC 200 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence 345666666554332211 1223456666666666542111110 11123455555555553
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.0005 Score=61.05 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=43.9
Q ss_pred CCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccE
Q 047486 371 PPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450 (776)
Q Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 450 (776)
.+.+|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...+....+++.+.+.+ .+.......|..+++|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccc
Confidence 344455555543 333344445555555666666553 33 33333333333455665544 333344445555566666
Q ss_pred EEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCc
Q 047486 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHEL 496 (776)
Q Consensus 451 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 496 (776)
+++..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 665543 443444455555 555555544 3333444445555444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.00049 Score=61.12 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=22.2
Q ss_pred cccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 130 SIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 130 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
.|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +......+|.++++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344445555555443 233333444555555555555443 333333444444445555543
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=9.8e-05 Score=83.75 Aligned_cols=149 Identities=20% Similarity=0.186 Sum_probs=102.1
Q ss_pred CCCCEEeCCCCCCccccCChhHhh-cCCCCCCEEeCCCccCCCCC-hhhHhhccCCccEEEcCCCCCCccCCCCCCCCCC
Q 047486 5 SKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIK-PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPN 82 (776)
Q Consensus 5 ~~L~~L~Ls~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~ 82 (776)
.+|++||+++.... ...++..+ ..+|.|+.|.+++-.+.... -....++ ++|+.||+|+++++.. ..++++++
T Consensus 122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--HHHhcccc
Confidence 57999999987543 25666555 46999999999987775542 3344567 8999999999998733 56788999
Q ss_pred CCEEeccCCCCccccCCCCCCC-CCcccCCCCcEEEccCCccccc------ccccccCCCCCCEEEccCCcccCCCchhh
Q 047486 83 LQILFLNLNSQLTGYLPKSNWS-SPLRELDLLSVLDIGFCNFTGS------IPTSIGNLTRATEIAFASNHFTGQLPHHV 155 (776)
Q Consensus 83 L~~L~Ls~n~~~~~~~p~~~~~-~~l~~L~~L~~L~Ls~n~l~~~------~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 155 (776)
|++|.+.+= .+.. ... ..+-.|++|++||+|....... .-+.-..|++|+.||.+++.+....-+.+
T Consensus 197 Lq~L~mrnL-e~e~-----~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 197 LQVLSMRNL-EFES-----YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HHHHhccCC-CCCc-----hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 999988654 2221 111 2266778899999998765421 12233468999999999988876544433
Q ss_pred -cCCCCCCEE
Q 047486 156 -SGLSYLTTF 164 (776)
Q Consensus 156 -~~l~~L~~L 164 (776)
...++|+.+
T Consensus 271 l~sH~~L~~i 280 (699)
T KOG3665|consen 271 LNSHPNLQQI 280 (699)
T ss_pred HHhCccHhhh
Confidence 233444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.00094 Score=64.11 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=29.2
Q ss_pred CCCcEEEccCC--cCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486 206 NSLQDVRLEEN--EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267 (776)
Q Consensus 206 ~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i 267 (776)
++|++|.++.| ++.+.++.-...+++|++|++++|++...-....+..+++|..|++.+|..
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 34444444444 333333333344466666666666554211112344445555666665553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00019 Score=68.82 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=61.5
Q ss_pred CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccc-hhhcCCCCcCEEEc
Q 047486 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP-CWLGSLHELKILVL 501 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 501 (776)
+.+.|+..+|.++.+ .....++.|+.|.|+-|+|+..- .+..|++|++|+|..|.|.+... ..+.++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456677777766643 33445677777777777777553 36677777777777777764322 23567777777877
Q ss_pred cCCcccccCCCCC---CCcCCCCccEEe
Q 047486 502 RSNRFYGPLCNSN---ITFPFQALRIID 526 (776)
Q Consensus 502 ~~n~l~~~~~~~~---~~~~l~~L~~Ld 526 (776)
..|+-.|.-+... ...-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777655433221 112356666665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.003 Score=60.75 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=16.5
Q ss_pred CCCCcEEEccCC--cccccccccccCCCCCCEEEccCCccc
Q 047486 110 LDLLSVLDIGFC--NFTGSIPTSIGNLTRATEIAFASNHFT 148 (776)
Q Consensus 110 L~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~ 148 (776)
|++|+.|+++.| .+++.++.....+++|++++++.|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333444444444 333333333333444555555554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00031 Score=67.46 Aligned_cols=84 Identities=26% Similarity=0.247 Sum_probs=48.3
Q ss_pred CCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc--hhhhCCcc
Q 047486 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEE 307 (776)
Q Consensus 230 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~l~~~~~ 307 (776)
.+.+.|+..++.+. .| .....++.|+.|.||-|+|+++.. +..|.+|++|+|..|.|..+. .++.++++
T Consensus 19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 34455555555554 22 234556666666666666554432 225666666666666666554 35667777
Q ss_pred cceEecccCcccccc
Q 047486 308 LYLLDLSNNRIQGRI 322 (776)
Q Consensus 308 L~~L~L~~n~l~~~~ 322 (776)
|+.|.|..|.-.|..
T Consensus 90 Lr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEA 104 (388)
T ss_pred hhhHhhccCCccccc
Confidence 777777777655443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.72 E-value=0.0038 Score=35.54 Aligned_cols=18 Identities=56% Similarity=0.700 Sum_probs=7.7
Q ss_pred CcEEeccCccCcCCCchhh
Q 047486 634 LESLDLSFNKLDGRIPEQL 652 (776)
Q Consensus 634 L~~L~Ls~N~l~~~~p~~l 652 (776)
|++|||++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.54 E-value=0.0011 Score=73.97 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred CCCcEEEccCCc-ccccccccccC-CCCCCEEEccCCc-ccCCCchh-hcCCCCCCEEEccCCcC
Q 047486 111 DLLSVLDIGFCN-FTGSIPTSIGN-LTRATEIAFASNH-FTGQLPHH-VSGLSYLTTFDLSGNYF 171 (776)
Q Consensus 111 ~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~n~l 171 (776)
.+|+.|+++++. +++..-..+.. |++|++|.+.++. ++...-.. ...++.|++|+++++..
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 335555555555 33322222322 5556666555544 33221111 23455566666655543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.49 E-value=0.0012 Score=73.82 Aligned_cols=134 Identities=16% Similarity=0.045 Sum_probs=68.4
Q ss_pred hcCCCCCCEEeCCCccCCCC--ChhhHhhccCCccEEEcCCC-CCCccC----CCCCCCCCCCCEEeccCCCCccccCCC
Q 047486 28 ASNLTKLSLLHLGATNMSLI--KPFSLLNLSSTMTDLDLGGT-RIKGNF----PDDIFRLPNLQILFLNLNSQLTGYLPK 100 (776)
Q Consensus 28 l~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~~L~~L~Ls~~-~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~~p~ 100 (776)
...++.|+.|.+.++.-... ........ ++|++|+++++ ...... ......+++|+.|+++++..+++..-.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 34467777777777643332 12233344 77777777763 111111 122344677778887777223322211
Q ss_pred CCCCCCcccCCCCcEEEccCCc-ccccccc-cccCCCCCCEEEccCCcccCC--CchhhcCCCCCCEEEc
Q 047486 101 SNWSSPLRELDLLSVLDIGFCN-FTGSIPT-SIGNLTRATEIAFASNHFTGQ--LPHHVSGLSYLTTFDL 166 (776)
Q Consensus 101 ~~~~~~l~~L~~L~~L~Ls~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L 166 (776)
.+. ..++.|++|.+.+|. +++..-. ....++.|++|+++.+..... +.....++++|+.+.+
T Consensus 263 ~l~----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 263 ALA----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHH----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 111 114457777776666 4432222 234577788888877654311 2222344555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0054 Score=34.91 Aligned_cols=20 Identities=60% Similarity=0.850 Sum_probs=11.0
Q ss_pred CCEEeCCCCcCcccCCccccc
Q 047486 610 LKVLNLSHNSLTGNIPVSFEN 630 (776)
Q Consensus 610 L~~L~Ls~N~l~~~~p~~~~~ 630 (776)
|+.|||++|+++ .+|.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 555666666665 45544443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.26 E-value=0.00065 Score=73.79 Aligned_cols=85 Identities=22% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCEEeCCCCCCccc-cCChhHhhcCCCCCCEEeCCCccCCCCChhhHhh---cc-CCccEEEcCCCCCCcc----CCCCC
Q 047486 7 LTHLDLSFCVLTIE-QRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLN---LS-STMTDLDLGGTRIKGN----FPDDI 77 (776)
Q Consensus 7 L~~L~Ls~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~---l~-~~L~~L~Ls~~~l~~~----~~~~l 77 (776)
+.+|+|.+|.+... ...+-..+....+|..|++++|.+.+.....+.+ .+ ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56667777766411 1123345566677777777777776543322221 11 3456666666666543 33445
Q ss_pred CCCCCCCEEeccCC
Q 047486 78 FRLPNLQILFLNLN 91 (776)
Q Consensus 78 ~~l~~L~~L~Ls~n 91 (776)
.....++.++++.|
T Consensus 169 ~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 169 EKNEHLTELDLSLN 182 (478)
T ss_pred hcccchhHHHHHhc
Confidence 55667777777766
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.10 E-value=0.1 Score=27.41 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=5.4
Q ss_pred CccEEeccCCCCCCc
Q 047486 284 SLKVLRFAYCNITEF 298 (776)
Q Consensus 284 ~L~~L~l~~n~l~~l 298 (776)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.21 E-value=0.00091 Score=72.69 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=37.6
Q ss_pred CcEEEccCCcccccc----cccccCCCCCCEEEccCCcccCCCchhh----cCC-CCCCEEEccCCcCCCC----CCccc
Q 047486 113 LSVLDIGFCNFTGSI----PTSIGNLTRATEIAFASNHFTGQLPHHV----SGL-SYLTTFDLSGNYFQGG----VPSWL 179 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~----~~~~l 179 (776)
+.+|.|.+|.+.... ...+.....|..|++++|.+.+..-..+ ... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 445555555554322 2233445555555555555542211111 111 3344555555555432 23334
Q ss_pred cCCCCCCEEEccCCcC
Q 047486 180 FTLPSLLSIDLSKNML 195 (776)
Q Consensus 180 ~~l~~L~~L~l~~n~l 195 (776)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455555555555554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.54 E-value=0.22 Score=29.56 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=9.0
Q ss_pred CCCcEEeccCccCcCC
Q 047486 632 TALESLDLSFNKLDGR 647 (776)
Q Consensus 632 ~~L~~L~Ls~N~l~~~ 647 (776)
++|+.|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.54 E-value=0.22 Score=29.56 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=9.0
Q ss_pred CCCcEEeccCccCcCC
Q 047486 632 TALESLDLSFNKLDGR 647 (776)
Q Consensus 632 ~~L~~L~Ls~N~l~~~ 647 (776)
++|+.|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.85 E-value=0.33 Score=28.77 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCCCEEeCCCCcCcccCCccc
Q 047486 607 FKSLKVLNLSHNSLTGNIPVSF 628 (776)
Q Consensus 607 l~~L~~L~Ls~N~l~~~~p~~~ 628 (776)
+++|+.|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888885444444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.85 E-value=0.33 Score=28.77 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCCCEEeCCCCcCcccCCccc
Q 047486 607 FKSLKVLNLSHNSLTGNIPVSF 628 (776)
Q Consensus 607 l~~L~~L~Ls~N~l~~~~p~~~ 628 (776)
+++|+.|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888885444444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=0.038 Score=51.14 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=43.1
Q ss_pred CccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCC-cccccccccccCCCC
Q 047486 58 TMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC-NFTGSIPTSIGNLTR 136 (776)
Q Consensus 58 ~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n-~l~~~~~~~l~~l~~ 136 (776)
.++.+|-+++.|...--+.+.+++.++.|.+.+|..+.+---+.+.. -.++|+.|++++| +|+...-..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhh
Confidence 45666666666655555556666666666666664333211111111 1122666666655 355444445555666
Q ss_pred CCEEEccC
Q 047486 137 ATEIAFAS 144 (776)
Q Consensus 137 L~~L~L~~ 144 (776)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66665543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.36 E-value=0.017 Score=54.32 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=37.2
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 192 (776)
.++||++.|++. .....|+.++.|..|+++.|.+. -.|..++....++.+++..|..+ ..|.+++..++++++++.+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 444444444443 22333444444445555544444 34444555555555555554444 4444455555555555544
Q ss_pred Cc
Q 047486 193 NM 194 (776)
Q Consensus 193 n~ 194 (776)
+.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 43
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.24 E-value=0.026 Score=53.21 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=51.7
Q ss_pred ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 664 (776)
Q Consensus 585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 664 (776)
..+.||++.|++.. .-..|+-++.|..||++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 44566777766652 2234555666666777777666 56666666666666776666666 556666667777777766
Q ss_pred cCcc
Q 047486 665 YNRL 668 (776)
Q Consensus 665 ~N~l 668 (776)
+|++
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 6664
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=0.073 Score=49.34 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=41.5
Q ss_pred CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCc-ccCCchhhhcCCCccEEECCCC-cCCccCcccccCCCCccEE
Q 047486 374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS-GTIPPCLGNFSTELITLHLKNN-SLEGHIHDTFANASHLRSL 451 (776)
Q Consensus 374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 451 (776)
.++.++-+++.|..+.-+.+.++++++.|.+.+|.-- +.--+.+.+..++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566777777776666666777777777777766421 1111122223335555555544 2443333333444444444
Q ss_pred EcC
Q 047486 452 DLN 454 (776)
Q Consensus 452 ~L~ 454 (776)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.57 E-value=0.15 Score=29.57 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=4.4
Q ss_pred CCCEEeCCCCcCc
Q 047486 609 SLKVLNLSHNSLT 621 (776)
Q Consensus 609 ~L~~L~Ls~N~l~ 621 (776)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.96 E-value=0.16 Score=29.47 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=11.8
Q ss_pred cCCCcEEeccCccCcCCCchh
Q 047486 631 MTALESLDLSFNKLDGRIPEQ 651 (776)
Q Consensus 631 l~~L~~L~Ls~N~l~~~~p~~ 651 (776)
+++|++|+|++|+++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 356778888888776544433
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.10 E-value=2.8 Score=24.93 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=6.9
Q ss_pred CCCCEEeCCCCcCc
Q 047486 608 KSLKVLNLSHNSLT 621 (776)
Q Consensus 608 ~~L~~L~Ls~N~l~ 621 (776)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.59 E-value=4.1 Score=24.15 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=11.2
Q ss_pred CCccEEeccCCCCCCcch
Q 047486 283 PSLKVLRFAYCNITEFPG 300 (776)
Q Consensus 283 ~~L~~L~l~~n~l~~lp~ 300 (776)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666666666664
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.99 E-value=20 Score=38.31 Aligned_cols=112 Identities=20% Similarity=0.058 Sum_probs=54.9
Q ss_pred CCCcEEEccCCcCCCCCCcc--ccCCCCCCEEECCCCcCccccCccccC--------CCCCCCEEeccCCCCCccccccc
Q 047486 206 NSLQDVRLEENEIRGTIPNS--TFQLVNLTILDLSSNNLSGAIRFDQFS--------KLKKLQFLDLSNNSLLSFTSSAN 275 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~i~~~~~~--------~l~~L~~L~Ls~n~i~~~~~~~~ 275 (776)
..+++|....|...+..... ...-+..+.+++..-.-.......... ...-+..+.++.+....-....
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~- 432 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESA- 432 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHH-
Confidence 35777788777776554332 233455666666543221000000000 1113556677777643222211
Q ss_pred cccccCCCCccEEeccCCCCCCc-----chhhhCCcccceEecccCcc
Q 047486 276 ISIKYSLPSLKVLRFAYCNITEF-----PGFLRNSEELYLLDLSNNRI 318 (776)
Q Consensus 276 ~~~~~~l~~L~~L~l~~n~l~~l-----p~~l~~~~~L~~L~L~~n~l 318 (776)
......-+.+.+|++++|..... |..+.....++....+.|..
T Consensus 433 in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 433 INKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred HHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 12223456788888888876533 33444444555555555443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.04 E-value=6 Score=23.92 Aligned_cols=14 Identities=57% Similarity=0.684 Sum_probs=9.7
Q ss_pred CCCcEEeccCccCc
Q 047486 632 TALESLDLSFNKLD 645 (776)
Q Consensus 632 ~~L~~L~Ls~N~l~ 645 (776)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777774
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.23 E-value=3.2 Score=53.79 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=19.3
Q ss_pred eCCCCcCcccCCccccccCCCcEEeccCccCc
Q 047486 614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645 (776)
Q Consensus 614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 645 (776)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45666666555555666666666666666554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.91 E-value=41 Score=36.04 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=9.1
Q ss_pred ccEEeCCCCcCCCCC
Q 047486 522 LRIIDLSHNEFTGFL 536 (776)
Q Consensus 522 L~~LdLs~n~l~~~~ 536 (776)
+++|+.+.|.+.|..
T Consensus 356 ~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEG 370 (553)
T ss_pred eeEeecccccccccc
Confidence 566666666665543
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=56.26 E-value=8.8 Score=22.62 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=7.7
Q ss_pred CCCCEEeccCCCCcc
Q 047486 81 PNLQILFLNLNSQLT 95 (776)
Q Consensus 81 ~~L~~L~Ls~n~~~~ 95 (776)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555553333
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.65 E-value=7.6 Score=42.17 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=16.9
Q ss_pred hcceeEEecCCCcccccch--hhhccCCCCCEEeCCCC
Q 047486 583 LVMFRAMDFSRNRFHGEIP--EVLGNFKSLKVLNLSHN 618 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N 618 (776)
.+.+..+.|++|++....- .--...+.|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455566666666543210 11112345555555555
No 94
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.46 E-value=31 Score=27.14 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=3.8
Q ss_pred HHhhhhhhhh
Q 047486 739 IGLSIGYMVF 748 (776)
Q Consensus 739 ~~~~~~~~~~ 748 (776)
+.++++.++|
T Consensus 14 v~~iiaIvvW 23 (81)
T PF00558_consen 14 VALIIAIVVW 23 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.96 E-value=41 Score=30.02 Aligned_cols=7 Identities=0% Similarity=-0.244 Sum_probs=2.7
Q ss_pred Eeeehhh
Q 047486 729 AKMGYAS 735 (776)
Q Consensus 729 ~~~~~~~ 735 (776)
+++++|+
T Consensus 52 IGvVVGV 58 (154)
T PF04478_consen 52 IGVVVGV 58 (154)
T ss_pred EEEEecc
Confidence 3333333
No 96
>PF15179 Myc_target_1: Myc target protein 1
Probab=30.80 E-value=11 Score=34.24 Aligned_cols=25 Identities=32% Similarity=0.846 Sum_probs=13.5
Q ss_pred cceeEEeeehhhhHhHHhhhhhhhh
Q 047486 724 FDWKMAKMGYASGLVIGLSIGYMVF 748 (776)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (776)
|.|.-+++++.+..++|++++.++|
T Consensus 16 f~~~~lIlaF~vSm~iGLviG~li~ 40 (197)
T PF15179_consen 16 FDWEDLILAFCVSMAIGLVIGALIW 40 (197)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 97
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.52 E-value=38 Score=27.87 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=10.0
Q ss_pred EEeeehhhhHhHHhhhhhhhh
Q 047486 728 MAKMGYASGLVIGLSIGYMVF 748 (776)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~ 748 (776)
++++++++.++++++++++.|
T Consensus 68 iagi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred EEEEEeehhhHHHHHHHHHhh
Confidence 344444444445555545443
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.97 E-value=35 Score=45.03 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=42.5
Q ss_pred ecCCCcccccchhhhccCCCCCEEeCCCCcCcccCC-cccc-ccCCCcEEeccCccCcCCCchhhccc
Q 047486 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFE-NMTALESLDLSFNKLDGRIPEQLLSV 655 (776)
Q Consensus 590 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l 655 (776)
||++|+|+...+..|..+++|+.|+|++|.+.-.-. ..|. .+..-+.--.....+.+.-|..+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~ 68 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQ 68 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCC
Confidence 689999998888899999999999999999873211 1111 11111110112245667778776664
No 99
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.93 E-value=36 Score=26.82 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.6
Q ss_pred hhHhHHh
Q 047486 735 SGLVIGL 741 (776)
Q Consensus 735 ~~~~~~~ 741 (776)
++.++|+
T Consensus 37 ~lvI~~i 43 (94)
T PF05393_consen 37 FLVICGI 43 (94)
T ss_pred HHHHHHH
Confidence 3333333
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.99 E-value=45 Score=36.58 Aligned_cols=63 Identities=27% Similarity=0.284 Sum_probs=36.0
Q ss_pred CccEEECCCCcCCccC--cccccCCCCccEEEcCCCcCcCCCChhhhc--CCCCcEEEcCCCccCcc
Q 047486 423 ELITLHLKNNSLEGHI--HDTFANASHLRSLDLNSNKLEGPLPRSLAK--CIKLEVVNVGKNMISDS 485 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~ 485 (776)
.+..++|++|++.... ...-...++|+.|+|++|...-....++.+ ...|++|-+.+|++...
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 5777888888875332 122233577888888888222111122222 23467777777777643
Done!