Query 047486
Match_columns 776
No_of_seqs 750 out of 5300
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.9E-78 1E-82 709.2 48.3 657 32-710 50-757 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-70 6.8E-75 642.8 47.1 604 6-671 51-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-58 5.5E-63 537.6 50.9 576 6-673 26-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-58 7.3E-63 536.6 45.1 608 8-710 7-635 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.2E-54 4E-59 498.3 41.9 539 8-673 15-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.1E-53 2.1E-57 484.1 42.6 303 354-705 256-567 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 5E-53 1.7E-57 500.5 40.0 549 57-704 24-591 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-53 1.4E-57 485.5 35.7 537 35-673 14-562 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-51 3.6E-56 473.8 36.0 543 60-709 14-569 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-51 1.9E-55 482.9 37.9 531 60-704 7-566 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 3E-47 1E-51 433.9 37.8 254 372-675 281-537 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-46 3.6E-51 427.0 36.4 487 62-673 10-514 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 6.3E-47 2.1E-51 431.2 34.4 513 7-650 9-536 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-46 1.5E-50 422.0 31.6 493 6-649 6-514 (549)
15 4eco_A Uncharacterized protein 100.0 1.9E-46 6.5E-51 429.3 19.1 363 120-646 192-601 (636)
16 4eco_A Uncharacterized protein 100.0 2.2E-46 7.6E-51 428.7 18.8 473 57-671 81-602 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 1.3E-44 4.5E-49 419.7 33.6 450 57-668 323-863 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 5.3E-44 1.8E-48 412.9 37.5 533 35-670 34-581 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-44 4.7E-49 406.6 28.4 455 114-671 3-483 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.3E-44 2.2E-48 401.1 28.4 454 61-538 4-486 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-42 8.1E-47 399.1 37.9 551 73-707 20-589 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 1.9E-43 6.5E-48 410.1 27.1 429 5-489 323-846 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-41 7.4E-46 383.6 28.6 455 35-539 34-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-41 7.6E-46 383.5 28.1 457 114-673 34-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.1E-38 3.6E-43 348.9 28.6 408 31-512 10-434 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 4.6E-38 1.6E-42 343.9 29.6 416 49-537 5-433 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 2.5E-37 8.6E-42 341.4 34.3 370 206-675 30-414 (455)
28 3bz5_A Internalin-J, INLJ; leu 100.0 4.7E-38 1.6E-42 344.1 24.9 371 70-547 31-401 (457)
29 3v47_A TOLL-like receptor 5B a 100.0 6.6E-37 2.3E-41 338.1 32.2 370 113-537 32-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-35 4.4E-40 324.8 26.7 363 218-675 30-393 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 3.7E-35 1.3E-39 325.9 24.0 323 287-673 15-337 (477)
32 1o6v_A Internalin A; bacterial 100.0 5.9E-34 2E-38 314.5 33.4 349 228-674 44-392 (466)
33 1o6v_A Internalin A; bacterial 100.0 1E-33 3.4E-38 312.7 33.2 345 206-647 46-390 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 2.1E-33 7.3E-38 311.7 24.9 322 335-705 15-340 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-34 2.8E-38 295.4 17.1 260 373-701 50-312 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 2.3E-31 8E-36 286.9 29.1 309 31-365 44-352 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 1.9E-31 6.4E-36 287.7 27.1 311 4-347 44-355 (390)
38 4fmz_A Internalin; leucine ric 100.0 7.5E-31 2.6E-35 278.4 31.2 306 252-669 41-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 3E-32 1E-36 283.7 17.8 250 352-671 50-307 (313)
40 4fmz_A Internalin; leucine ric 100.0 1.8E-30 6.1E-35 275.6 30.7 302 4-343 43-345 (347)
41 3oja_B Anopheles plasmodium-re 100.0 9.1E-31 3.1E-35 297.9 29.8 310 31-366 50-359 (597)
42 3oja_B Anopheles plasmodium-re 100.0 9.5E-31 3.3E-35 297.7 27.5 308 5-344 51-358 (597)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-29 6.3E-34 265.6 25.5 285 332-667 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 5.9E-29 2E-33 261.6 28.3 286 332-667 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 6.3E-29 2.1E-33 261.5 27.1 126 113-243 35-160 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 9.8E-33 3.4E-37 305.3 -2.2 291 307-647 86-413 (461)
47 1xku_A Decorin; proteoglycan, 100.0 1.4E-28 4.9E-33 258.7 29.4 289 33-342 32-330 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 7.5E-33 2.5E-37 306.2 -3.8 392 5-486 3-443 (461)
49 3ogk_B Coronatine-insensitive 100.0 2.2E-30 7.4E-35 296.1 -1.4 430 23-502 64-546 (592)
50 2z80_A TOLL-like receptor 2, v 100.0 4.9E-28 1.7E-32 257.0 16.3 279 330-673 30-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 4.7E-27 1.6E-31 244.3 22.1 275 356-674 11-292 (306)
52 3ogk_B Coronatine-insensitive 99.9 1.7E-29 5.9E-34 288.6 0.9 437 35-529 53-547 (592)
53 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.7E-31 252.8 24.7 230 372-670 74-304 (452)
54 3zyi_A Leucine-rich repeat-con 99.9 1.3E-26 4.4E-31 254.7 21.6 255 398-704 55-309 (452)
55 2z66_A Variable lymphocyte rec 99.9 1.3E-26 4.4E-31 241.0 20.0 248 376-671 10-263 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 1.3E-26 4.3E-31 253.8 20.5 250 374-670 44-293 (440)
57 3zyj_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 249.9 24.3 247 356-647 47-294 (440)
58 4fcg_A Uncharacterized protein 99.9 9.3E-27 3.2E-31 243.6 17.3 234 373-669 81-314 (328)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-26 1.3E-30 234.8 21.3 210 423-675 57-267 (285)
60 2z80_A TOLL-like receptor 2, v 99.9 4.9E-27 1.7E-31 249.3 15.0 282 304-649 29-318 (353)
61 4fcg_A Uncharacterized protein 99.9 1.6E-26 5.6E-31 241.7 18.3 225 31-268 80-314 (328)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.6E-31 238.1 17.1 228 400-673 14-242 (285)
63 1wwl_A Monocyte differentiatio 99.9 2.1E-28 7.3E-33 254.7 3.4 249 374-670 44-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 5.8E-25 2E-29 247.2 28.3 269 306-656 40-308 (622)
65 3g06_A SSPH2 (leucine-rich rep 99.9 6E-25 2E-29 247.1 28.3 263 331-674 40-302 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-26 6.5E-31 240.5 11.8 264 7-320 12-277 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.6E-31 241.6 8.7 219 375-674 60-281 (317)
68 2p1m_B Transport inhibitor res 99.9 2E-28 6.9E-33 279.9 -6.0 443 9-505 47-542 (594)
69 1wwl_A Monocyte differentiatio 99.9 8.6E-26 2.9E-30 235.0 10.4 160 372-533 94-266 (312)
70 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.8E-30 247.6 12.0 237 373-665 34-271 (487)
71 3oja_A Leucine-rich immune mol 99.9 1.3E-24 4.3E-29 239.9 16.4 246 22-314 20-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 5.8E-24 2E-28 217.3 20.0 226 402-674 12-242 (276)
73 2p1m_B Transport inhibitor res 99.9 8.1E-27 2.8E-31 266.6 -4.5 85 583-668 431-518 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 7.6E-23 2.6E-27 209.0 20.7 204 32-267 28-236 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 205.9 21.2 203 398-670 17-219 (270)
76 3goz_A Leucine-rich repeat-con 99.9 8.1E-24 2.8E-28 225.0 7.3 258 378-671 3-299 (362)
77 3rfs_A Internalin B, repeat mo 99.9 2.4E-22 8.1E-27 204.5 17.7 201 29-247 38-239 (272)
78 3rfs_A Internalin B, repeat mo 99.9 3.4E-22 1.2E-26 203.4 18.6 204 394-675 38-241 (272)
79 4glp_A Monocyte differentiatio 99.9 2.4E-23 8.1E-28 216.4 8.4 230 397-670 64-308 (310)
80 2o6q_A Variable lymphocyte rec 99.9 4.6E-21 1.6E-25 194.8 24.7 199 59-267 18-217 (270)
81 1p9a_G Platelet glycoprotein I 99.9 3.7E-21 1.3E-25 197.1 22.3 203 77-319 6-208 (290)
82 1p9a_G Platelet glycoprotein I 99.9 4.4E-21 1.5E-25 196.5 21.0 202 28-243 6-208 (290)
83 2xwt_C Thyrotropin receptor; s 99.9 4.4E-22 1.5E-26 198.5 11.4 203 412-666 25-236 (239)
84 3goz_A Leucine-rich repeat-con 99.9 5.8E-23 2E-27 218.4 5.1 262 357-653 3-305 (362)
85 2ca6_A RAN GTPase-activating p 99.9 2.6E-23 9E-28 223.5 2.0 248 389-672 24-319 (386)
86 2ast_B S-phase kinase-associat 99.9 2.7E-22 9.1E-27 211.5 8.1 249 376-675 50-312 (336)
87 4glp_A Monocyte differentiatio 99.8 1.7E-21 5.7E-26 202.4 11.4 229 31-269 63-308 (310)
88 2ca6_A RAN GTPase-activating p 99.8 3.2E-22 1.1E-26 215.0 5.8 249 372-663 31-337 (386)
89 1h6u_A Internalin H; cell adhe 99.8 1.6E-20 5.5E-25 194.4 18.1 193 395-670 39-231 (308)
90 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5.1E-25 187.4 15.9 150 113-265 33-189 (239)
91 2ast_B S-phase kinase-associat 99.8 6.3E-22 2.2E-26 208.6 5.9 234 373-654 70-315 (336)
92 3m19_A Variable lymphocyte rec 99.8 6.3E-20 2.2E-24 184.2 19.2 158 32-196 35-192 (251)
93 3m19_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 179.8 21.1 178 355-535 17-194 (251)
94 1h6u_A Internalin H; cell adhe 99.8 8.3E-20 2.9E-24 189.0 18.0 194 28-243 37-230 (308)
95 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.1E-24 200.0 17.2 67 586-657 182-255 (571)
96 4ay9_X Follicle-stimulating ho 99.8 2.3E-19 7.8E-24 189.6 16.5 153 355-507 12-167 (350)
97 4ay9_X Follicle-stimulating ho 99.8 5.2E-19 1.8E-23 186.8 18.2 242 376-668 12-258 (350)
98 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 198.2 16.8 182 424-675 61-249 (571)
99 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 169.9 15.7 24 609-632 166-189 (208)
100 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 169.8 14.9 174 356-540 11-185 (208)
101 2xot_A Amphoterin-induced prot 99.8 4.1E-18 1.4E-22 180.7 15.3 177 400-646 21-203 (361)
102 1h6t_A Internalin B; cell adhe 99.7 9.5E-18 3.3E-22 171.9 15.7 82 583-670 133-214 (291)
103 1h6t_A Internalin B; cell adhe 99.7 2.4E-17 8.1E-22 168.9 15.4 173 28-220 42-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 6.2E-17 2.1E-21 158.4 16.5 136 399-537 34-170 (220)
105 2v9t_B SLIT homolog 2 protein 99.7 6.5E-17 2.2E-21 158.2 16.5 133 373-506 32-164 (220)
106 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.6E-22 186.5 13.6 194 398-650 22-215 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 9.3E-17 3.2E-21 157.1 16.1 155 354-509 13-168 (220)
108 3e6j_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 157.7 16.6 61 588-649 116-176 (229)
109 2v9t_B SLIT homolog 2 protein 99.7 1E-16 3.5E-21 156.8 16.1 152 35-196 14-165 (220)
110 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4E-21 179.6 18.5 170 4-197 42-211 (605)
111 3e6j_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 153.7 17.8 150 355-507 22-172 (229)
112 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.2E-21 168.6 14.8 156 375-533 41-202 (361)
113 1xeu_A Internalin C; cellular 99.7 6.6E-17 2.2E-21 162.9 10.9 100 423-533 20-119 (263)
114 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.6E-21 153.3 12.5 132 53-197 41-173 (197)
115 1xeu_A Internalin C; cellular 99.7 5.6E-17 1.9E-21 163.4 9.9 171 444-671 17-187 (263)
116 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.3E-21 152.8 12.4 154 29-197 41-195 (197)
117 1w8a_A SLIT protein; signaling 99.7 6E-17 2.1E-21 154.8 8.6 91 583-673 53-143 (192)
118 1dce_A Protein (RAB geranylger 99.7 1.4E-18 4.9E-23 194.0 -4.2 189 280-486 346-549 (567)
119 1dce_A Protein (RAB geranylger 99.7 3.9E-18 1.3E-22 190.5 -0.9 202 3-237 347-567 (567)
120 3sb4_A Hypothetical leucine ri 99.7 6.8E-17 2.3E-21 169.1 8.3 283 31-337 24-327 (329)
121 4b8c_D Glucose-repressible alc 99.6 6.3E-17 2.2E-21 186.6 5.5 157 373-538 173-334 (727)
122 4b8c_D Glucose-repressible alc 99.6 7.3E-17 2.5E-21 186.1 2.8 216 32-267 173-403 (727)
123 4fs7_A Uncharacterized protein 99.6 3E-14 1E-18 152.9 23.1 332 126-499 62-393 (394)
124 3sb4_A Hypothetical leucine ri 99.6 9.9E-16 3.4E-20 160.2 10.0 85 583-669 225-310 (329)
125 1w8a_A SLIT protein; signaling 99.6 1.5E-15 5.1E-20 145.1 10.2 131 60-198 11-141 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 4.6E-15 1.6E-19 138.6 11.2 133 57-197 24-161 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 4.9E-15 1.7E-19 135.3 10.1 128 57-192 17-149 (149)
128 4fdw_A Leucine rich hypothetic 99.6 1.6E-13 5.3E-18 146.4 22.1 229 231-493 136-368 (401)
129 2ell_A Acidic leucine-rich nuc 99.6 8.2E-15 2.8E-19 136.8 10.6 82 113-196 26-108 (168)
130 4fdw_A Leucine rich hypothetic 99.5 5.8E-13 2E-17 142.0 24.3 263 57-342 113-381 (401)
131 2wfh_A SLIT homolog 2 protein 99.5 7E-14 2.4E-18 133.3 14.6 107 398-506 32-138 (193)
132 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.1E-19 131.5 9.8 127 373-502 17-148 (149)
133 4fs7_A Uncharacterized protein 99.5 7.4E-13 2.5E-17 142.0 23.8 235 202-475 158-393 (394)
134 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 131.7 14.6 127 60-196 13-139 (193)
135 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 129.6 13.7 133 399-537 9-141 (177)
136 2o6r_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 127.1 15.3 112 373-485 28-139 (177)
137 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 128.7 10.0 90 584-673 30-119 (170)
138 2r9u_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 125.3 10.1 88 584-671 33-120 (174)
139 1ds9_A Outer arm dynein; leuci 99.4 3.4E-15 1.2E-19 143.6 -4.5 83 583-669 92-185 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.4 3.9E-13 1.3E-17 126.3 9.5 136 392-533 14-153 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.4 4E-13 1.4E-17 126.3 9.6 107 207-319 43-153 (176)
142 4gt6_A Cell surface protein; l 99.4 2.6E-11 9E-16 129.9 24.0 80 423-505 289-368 (394)
143 3g39_A Variable lymphocyte rec 99.4 3E-12 1E-16 119.3 11.6 105 399-507 11-115 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 2.7E-14 9.1E-19 137.3 -2.7 133 465-646 43-186 (198)
145 4gt6_A Cell surface protein; l 99.4 1.2E-10 4.1E-15 124.8 25.2 330 126-505 54-389 (394)
146 2r9u_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 117.9 11.6 104 400-507 15-118 (174)
147 3un9_A NLR family member X1; l 99.2 8.1E-13 2.8E-17 139.5 -0.6 85 423-507 102-196 (372)
148 3un9_A NLR family member X1; l 99.2 7.5E-13 2.6E-17 139.8 -1.0 164 32-197 72-253 (372)
149 2ifg_A High affinity nerve gro 99.1 6E-11 2.1E-15 124.9 8.5 80 589-670 13-94 (347)
150 4h09_A Hypothetical leucine ri 99.1 5.7E-09 2E-13 111.1 22.9 86 390-478 256-341 (379)
151 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.6E-13 108.2 24.6 147 301-472 212-358 (379)
152 2ifg_A High affinity nerve gro 99.0 5.2E-10 1.8E-14 117.7 10.5 102 378-483 13-116 (347)
153 2ra8_A Uncharacterized protein 98.8 2.3E-09 7.9E-14 111.9 4.9 83 583-667 251-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.8E-13 106.7 7.4 162 440-643 166-341 (362)
155 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.4E-12 92.7 3.7 67 605-673 167-237 (267)
156 3rw6_A Nuclear RNA export fact 98.3 5.5E-07 1.9E-11 88.9 6.9 80 581-662 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 2.9E-07 1E-11 86.5 3.9 92 392-484 31-137 (185)
158 1io0_A Tropomodulin; LRR prote 98.3 1.4E-07 4.9E-12 88.6 1.3 122 24-148 28-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 4E-06 1.4E-10 76.4 3.4 82 113-194 63-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 4.6E-06 1.6E-10 76.0 2.2 83 423-505 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00035 1.2E-08 64.9 4.5 64 395-459 39-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00031 1.1E-08 65.2 1.8 120 25-147 34-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0016 5.6E-08 56.4 5.5 58 587-646 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.003 1E-07 54.7 6.0 57 611-669 11-68 (130)
165 2lz0_A Uncharacterized protein 70.0 4.4 0.00015 32.6 4.1 46 433-479 7-52 (100)
166 2lz0_A Uncharacterized protein 52.2 23 0.00077 28.3 5.3 40 128-168 13-52 (100)
167 2knc_B Integrin beta-3; transm 23.0 16 0.00053 27.7 -0.3 7 760-766 44-50 (79)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-78 Score=709.19 Aligned_cols=657 Identities=29% Similarity=0.398 Sum_probs=544.3
Q ss_pred CCCCEEeCCCccCCCC---ChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCC--CCCCCC
Q 047486 32 TKLSLLHLGATNMSLI---KPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPK--SNWSSP 106 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~---~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~--~~~~~~ 106 (776)
.+++.|+|+++.+.+. +|..+.++ ++|+.++++.+.+. .+|..++++++|++|+|++| .+.|.+|. .
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L-~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~----- 121 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSL-TGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRN-SLSGPVTTLTS----- 121 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTC-TTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSS-EEEEEGGGGGG-----
T ss_pred CcEEEEECCCCCcCCccCccChhHhcc-CcccccCCcCCCcC-CCchhhccCCCCCEEECCCC-cCCCcCCChHH-----
Confidence 5678888888888887 77788888 88888888888765 46678888889999999888 88887776 4
Q ss_pred cccCCCCcEEEccCCcccccccccc-cCCCCCCEEEccCCcccCCCchh---hcCCCCCCEEEccCCcCCCCCCccccCC
Q 047486 107 LRELDLLSVLDIGFCNFTGSIPTSI-GNLTRATEIAFASNHFTGQLPHH---VSGLSYLTTFDLSGNYFQGGVPSWLFTL 182 (776)
Q Consensus 107 l~~L~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l 182 (776)
+.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..|. ..+
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l 199 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC 199 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC
Confidence 6667778999999888888777766 78888999999998888877776 78888899999999888866553 788
Q ss_pred CCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEec
Q 047486 183 PSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262 (776)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 262 (776)
++|++|++++|.+.+.++.+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.++.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEEC
Confidence 8899999999988886666766688999999999988888888889999999999999888776632 7888999999
Q ss_pred cCCCCC-ccccccccccccCCCCccEEeccCCCCC-CcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcC
Q 047486 263 SNNSLL-SFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340 (776)
Q Consensus 263 s~n~i~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 340 (776)
++|.++ .++.. ....+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++
T Consensus 277 ~~n~l~~~ip~~----~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 277 AENKFTGEIPDF----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp CSSEEEESCCCC----SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred cCCccCCccCHH----HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 998854 22222 1223588999999999886 67788899999999999999998888877668889999999999
Q ss_pred cccccccccc---cc-ccCEEeccCcccCCCCCCC-----CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc
Q 047486 341 NFMTHIELHP---WM-NITTLDLRNNRIQGSILVP-----PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411 (776)
Q Consensus 341 n~l~~~~~~~---~~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 411 (776)
|.+++..+.. +. +|++|++++|.+++.++.. +++|++|++++|.+.+.+|..+..+++|++|++++|++++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 9988655543 33 8999999999988766543 5689999999999999999999999999999999999999
Q ss_pred cCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc
Q 047486 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491 (776)
Q Consensus 412 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 491 (776)
.+|..+..+. +|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++
T Consensus 433 ~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 433 TIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 9999998886 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCc--eecccCc-----cc
Q 047486 492 SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR--LEYMGGA-----FY 564 (776)
Q Consensus 492 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~--~~~~~~~-----~~ 564 (776)
.+++|++|++++|++.+.+|... ..+++|+.||+++|+++|.+|..++... .+..+..... ..+.... ..
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred cCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhccc-chhhhhcccccccccccccccccccc
Confidence 99999999999999999888765 6789999999999999999998865432 2221111110 0000000 00
Q ss_pred cceE------------------------EEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcC
Q 047486 565 DESI------------------------TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSL 620 (776)
Q Consensus 565 ~~~~------------------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 620 (776)
.... .....|........++.|+.|||++|+++|.+|.+|+++++|+.|+|++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 0000 0111222222233468899999999999999999999999999999999999
Q ss_pred cccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCCCCCCC
Q 047486 621 TGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVR 700 (776)
Q Consensus 621 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~ 700 (776)
+|.+|..|+++++|++|||++|+++|.+|+.+..+++|++||+++|+++|.||.++||.+|...+|.||++|||.|+. .
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~ 747 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-R 747 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-C
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred CCCCCCCCCC
Q 047486 701 CSNDGLPEAL 710 (776)
Q Consensus 701 C~~~~~~~~~ 710 (776)
|....+..|+
T Consensus 748 C~~~~~~~~~ 757 (768)
T 3rgz_A 748 CDPSNADGYA 757 (768)
T ss_dssp CCSCC-----
T ss_pred CCCCccCCCC
Confidence 9875544443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-70 Score=642.81 Aligned_cols=604 Identities=29% Similarity=0.366 Sum_probs=387.8
Q ss_pred CCCEEeCCCCCCccccCC---hhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCC--CCCCC
Q 047486 6 KLTHLDLSFCVLTIEQRT---FDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPD--DIFRL 80 (776)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~--~l~~l 80 (776)
++++|||+++.+. +. +++.+.++++|+.++++.+.+.. .|..++.+ ++|++|+|++|.+.|.+|. .++++
T Consensus 51 ~v~~L~L~~~~l~---g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTSIDLSSKPLN---VGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp EEEEEECTTSCCC---EEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCC-TTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred cEEEEECCCCCcC---CccCccChhHhccCcccccCCcCCCcCC-CchhhccC-CCCCEEECCCCcCCCcCCChHHHhCC
Confidence 4566666666664 44 56666666666666666555432 23455566 6666666666666665655 66666
Q ss_pred CCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCccccccccc---ccCCCCCCEEEccCCcccCCCchhhcC
Q 047486 81 PNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTS---IGNLTRATEIAFASNHFTGQLPHHVSG 157 (776)
Q Consensus 81 ~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~ 157 (776)
++|++|++++| .+.+.+|..+ +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..| +..
T Consensus 126 ~~L~~L~Ls~n-~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 198 (768)
T 3rgz_A 126 SGLKFLNVSSN-TLDFPGKVSG----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198 (768)
T ss_dssp TTCCEEECCSS-EEECCSSCCS----CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTT
T ss_pred CCCCEEECcCC-ccCCcCCHHH----hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--ccc
Confidence 66666666666 5555555432 134444666666666666655554 5566666666666666665444 255
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC-CCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID-LFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236 (776)
Q Consensus 158 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 236 (776)
+++|++|++++|.+.+.+|. ++++++|++|++++|.+++..+ .+..+++|++|++++|.+++.+|.. .+++|++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 66666666666666655555 6666666666666666654332 2334466666666666666555543 566666666
Q ss_pred CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC-Ccchh-hhCCcccceEecc
Q 047486 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGF-LRNSEELYLLDLS 314 (776)
Q Consensus 237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~~~~L~~L~L~ 314 (776)
+++|.+.+.++...+..+++|++|++++|.++.... ..+..+++|++|++++|.++ .+|.. +..+++|++|+++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP----PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC----GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc----hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 666666655553333334666666666665432111 12345566666666666664 55543 5666666666666
Q ss_pred cCccccccCCCcccCCc-cCCeEeCcCcccccccccc-----ccccCEEeccCcccCCCCCC---CCCCCcEEEccCCcC
Q 047486 315 NNRIQGRISKSDSPGWK-SLIDLDLSNNFMTHIELHP-----WMNITTLDLRNNRIQGSILV---PPPSTKVLLVSNNKL 385 (776)
Q Consensus 315 ~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l 385 (776)
+|.+++.+|..+ ..++ +|++|++++|.+++..+.. +++|++|++++|.+++.+|. .+++|++|++++|.+
T Consensus 352 ~n~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTH-HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCccCccccHHH-HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 666665555554 3343 6666666666655433321 34566666666666655443 255666666666666
Q ss_pred ccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChh
Q 047486 386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465 (776)
Q Consensus 386 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 465 (776)
.+.+|..+..+++|++|++++|.+.+.+|..+..+. +|++|++++|.+++.+|..+..+++|++|+|++|++++.+|.+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 666666666666666666666666666666655554 5666666666666666666666666666666666666666666
Q ss_pred hhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC-------------------------------
Q 047486 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN------------------------------- 514 (776)
Q Consensus 466 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------------------- 514 (776)
++.+++|++|++++|++++.+|..+..+++|++|++++|++.|.+|...
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 6666666666666666666666666666666666666666665554321
Q ss_pred -------------------------------------CCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486 515 -------------------------------------ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557 (776)
Q Consensus 515 -------------------------------------~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~ 557 (776)
.+..+++|+.||+++|+++|.+|..+ .
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l-~--------------- 653 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-G--------------- 653 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG-G---------------
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH-h---------------
Confidence 11345678889999999988888653 1
Q ss_pred cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 637 (776)
.++.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++|
T Consensus 654 ------------------------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 654 ------------------------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp ------------------------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ------------------------ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 26778999999999999999999999999999999999999999999999999999
Q ss_pred eccCccCcCCCchhhccccccccccCccCc-ceec
Q 047486 638 DLSFNKLDGRIPEQLLSVTALALLNLSYNR-LWGR 671 (776)
Q Consensus 638 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~ 671 (776)
||++|+++|.||+. ..+..+....+.+|+ ++|.
T Consensus 710 ~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp ECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred ECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 99999999999975 445566677788885 7874
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-58 Score=537.61 Aligned_cols=576 Identities=21% Similarity=0.245 Sum_probs=340.6
Q ss_pred CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCE
Q 047486 6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQI 85 (776)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~ 85 (776)
++++||+++|.+. +..+..+.++++|++|++++|.+.+..|..++++ ++|++|+|++|.+++..+.+|+++++|++
T Consensus 26 ~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 26 NITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCE
Confidence 4556666655554 3333445555666666666665555555555555 56666666666555333334555666666
Q ss_pred EeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhc--CCCCCCE
Q 047486 86 LFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS--GLSYLTT 163 (776)
Q Consensus 86 L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~ 163 (776)
|++++| .+.+..|.. +.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++
T Consensus 102 L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 102 LHLMSN-SIQKIKNNP-----FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp EECCSS-CCCCCCSCT-----TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred EECCCC-ccCccChhH-----ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 666655 454333333 33444466666666655555555555566666666666655554444443 3355666
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC-----CCCCCCCCcEEEccCCcCCCCCCccccCCCC--CCEEE
Q 047486 164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID-----LFQLPNSLQDVRLEENEIRGTIPNSTFQLVN--LTILD 236 (776)
Q Consensus 164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~ 236 (776)
|++++|.+++..|.++..+++|+.|+++++.+..... .... ++|+.|++++|.+++..|..+..++. |++|+
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT-SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh-ccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 6666665555555555555556666555554432100 0011 45566666666665555555555433 66666
Q ss_pred CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC------Ccch----hhhCCc
Q 047486 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT------EFPG----FLRNSE 306 (776)
Q Consensus 237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------~lp~----~l~~~~ 306 (776)
+++|.+.+ ++...|..+++|++|++++|.+..... ..+..+++|++|++++|... .+|. .+..++
T Consensus 255 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 255 LSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFS----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECT----TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCCCCcCc-cCcccccCcccccEeeCCCCccCccCh----hhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 66666552 233455555666666666655433322 12334555555555544322 2221 344444
Q ss_pred ccceEecccCccccccCCCcccCCccCCeEeCcCccccc--cccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCc
Q 047486 307 ELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH--IELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNK 384 (776)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 384 (776)
+|+.|++++|.+.+ ++...+.++++|++|++++|.+.. +....+.. ...++|+.|++++|+
T Consensus 330 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~----------------~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 330 CLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS----------------LAHSPLHILNLTKNK 392 (680)
T ss_dssp TCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG----------------GTTSCCCEEECTTSC
T ss_pred CCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcc----------------cccCcCceEECCCCC
Confidence 55555555554443 222222444444444444443211 11111000 012467777888888
Q ss_pred CccCCCccccCCCCCCEEEccCCcCcccCCc-hhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCc--CC
Q 047486 385 LSGKIPPSICSLSSLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE--GP 461 (776)
Q Consensus 385 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~ 461 (776)
+.+..|.++..+++|++|++++|.+.+.+|. .+..+ ++|++|++++|.+++..+..|..+++|+.|++++|.+. +.
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc-ccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 7777777788888888888888888766664 34344 46888888888777777777777788888888877776 45
Q ss_pred CChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccc
Q 047486 462 LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 541 (776)
Q Consensus 462 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~ 541 (776)
.|..+..+++|++|++++|++++..+.+|..+++|++|++++|++.+....... ..|...+
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------~~~~~~~ 532 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP-------------------GGPIYFL 532 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST-------------------TSCCCTT
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc-------------------CCcchhh
Confidence 677777777777777777777777677777777777777777766543211100 0000001
Q ss_pred cChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCc
Q 047486 542 PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLT 621 (776)
Q Consensus 542 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 621 (776)
..++.|+.|++++|+++...+..|+++++|+.|+|++|+++
T Consensus 533 ---------------------------------------~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 533 ---------------------------------------KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 11456777888888887555556888899999999999998
Q ss_pred ccCCccccccCCCcEEeccCccCcCCCchhhc-cccccccccCccCcceecCC
Q 047486 622 GNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 622 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP 673 (776)
+..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 77777788889999999999999888888777 77888888888888776544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-58 Score=536.60 Aligned_cols=608 Identities=20% Similarity=0.203 Sum_probs=413.7
Q ss_pred CEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEe
Q 047486 8 THLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILF 87 (776)
Q Consensus 8 ~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~ 87 (776)
+.+|++++.++ .+|..+. +++++|++++|.+.+..+..+.++ ++|++|+|++|.+.+..|..++++++|++|+
T Consensus 7 ~~~~cs~~~L~----~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 7 EVADCSHLKLT----QVPDDLP--TNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp SEEECCSSCCS----SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred CeeECCCCCcc----ccccccC--CCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence 45666666663 3333222 566666666666666655566666 6666666666666655566666666666666
Q ss_pred ccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEcc
Q 047486 88 LNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS 167 (776)
Q Consensus 88 Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 167 (776)
+++| .+.+..+.. +.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 80 L~~n-~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 80 LQHN-ELSQLSDKT-----FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCSS-CCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CCCC-ccCccChhh-----hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 6666 544322222 3344445555555555554444555555555555555555555555555555555555555
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccC
Q 047486 168 GNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR 247 (776)
Q Consensus 168 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~ 247 (776)
+|.+++..+..+..+ .+++|++|++++|.+++..|..+..+++|+.|+++++.+.+...
T Consensus 154 ~n~l~~~~~~~~~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 154 NNKIQALKSEELDIF---------------------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp SSCCCCBCHHHHGGG---------------------TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred CCcccccCHHHhhcc---------------------ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 555554444333211 11455555555555555556666666677777776666542211
Q ss_pred cc--ccCCCCCCCEEeccCCCCCccccccccccccCC--CCccEEeccCCCCCCcc-hhhhCCcccceEecccCcccccc
Q 047486 248 FD--QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL--PSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRI 322 (776)
Q Consensus 248 ~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~ 322 (776)
.. .....++|++|++++|.+....... +..+ ++|++|++++|.++.++ .++..+++|+.|++++|.+.+..
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTT----FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTT----TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred HHHHHHhhhccccEEEccCCcccccChhH----hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC
Confidence 00 0012356777777777655443222 2223 34777777777776554 56788888888888888888655
Q ss_pred CCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEE
Q 047486 323 SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYL 402 (776)
Q Consensus 323 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 402 (776)
+..+ .++++|++|++++|....... ...+.. +....+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 289 ~~~~-~~l~~L~~L~L~~~~~~~~~~--~~~lp~-------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 289 SHSL-HGLFNVRYLNLKRSFTKQSIS--LASLPK-------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp TTTT-TTCTTCCEEECTTCBCCC--------CCE-------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred hhhh-cCCCCccEEeccchhhhcccc--cccccc-------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 5444 778888888887764332110 000111 111223456788999999999998888889999999999
Q ss_pred EccCCcCccc-CCc-hhhhc-CCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcC
Q 047486 403 SLSDNNLSGT-IPP-CLGNF-STELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVG 478 (776)
Q Consensus 403 ~Ls~n~l~~~-~p~-~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~ 478 (776)
++++|.+... ++. .+... .++|+.|++++|++++..+..|..+++|+.|++++|.+++.+| ..|.++++|++|+++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 9999976432 232 22222 1379999999999999999999999999999999999987655 789999999999999
Q ss_pred CCccCcccchhhcCCCCcCEEEccCCcccc--cCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCce
Q 047486 479 KNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL 556 (776)
Q Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~ 556 (776)
+|++.+..+..|..+++|++|++++|.+.+ ..|.. +..+++|+.|++++|++++ +|...|.+
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~--~~~l~~L~~L~Ls~N~l~~-i~~~~~~~------------- 502 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIAN-INDDMLEG------------- 502 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT--TTTCTTCCEEECCSSCCCC-CCTTTTTT-------------
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcc--cccCCCCCEEECCCCCCCc-CChhhhcc-------------
Confidence 999999999999999999999999999874 34443 4778999999999999985 44333332
Q ss_pred ecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccch--------hhhccCCCCCEEeCCCCcCcccCCccc
Q 047486 557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP--------EVLGNFKSLKVLNLSHNSLTGNIPVSF 628 (776)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 628 (776)
++.|+.|++++|++++..+ ..|+++++|++|+|++|+++...+..|
T Consensus 503 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 503 --------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp --------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred --------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 5678999999999986532 238899999999999999996555679
Q ss_pred cccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCccc-ccccccccCCCCCCCCCCCCC-CCC
Q 047486 629 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFE-NDSYIGNIHLCGEPLTVRCSN-DGL 706 (776)
Q Consensus 629 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~-~~~~~~n~~l~g~pl~~~C~~-~~~ 706 (776)
.++++|++|||++|++++..+..|..+++|+.|++++|++++..|.. |. .........+.|||+.|+|.. .|.
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~L~~l~l~~N~~~c~c~~~~~~ 631 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV-----FGPAFRNLTELDMRFNPFDCTCESIAWF 631 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH-----HHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH-----hcccccccCEEEccCCCcccCCccHHHH
Confidence 99999999999999999888888899999999999999999765532 11 122234456788999999985 666
Q ss_pred CCCC
Q 047486 707 PEAL 710 (776)
Q Consensus 707 ~~~~ 710 (776)
..|.
T Consensus 632 ~~~~ 635 (680)
T 1ziw_A 632 VNWI 635 (680)
T ss_dssp ECCS
T ss_pred HHHH
Confidence 5553
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-54 Score=498.30 Aligned_cols=539 Identities=19% Similarity=0.137 Sum_probs=322.3
Q ss_pred CEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEe
Q 047486 8 THLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILF 87 (776)
Q Consensus 8 ~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~ 87 (776)
+++|.++..++ .+|..+. +++++|++++|.+++..|..+.++ ++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus 15 ~~~~c~~~~l~----~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 15 KTYNCENLGLN----EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TEEECTTSCCS----SCCTTSC--TTCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ceEECCCCCcc----cCcCCCC--CcCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeee
Confidence 45666665553 3333332 356677777777766666666666 6677777777766666666667777777777
Q ss_pred ccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEcc
Q 047486 88 LNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS 167 (776)
Q Consensus 88 Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 167 (776)
+++| .+.+..|.. +.++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 88 Ls~n-~l~~~~~~~-----~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 88 LTAN-PLIFMAETA-----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp CTTC-CCSEECTTT-----TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred CCCC-cccccChhh-----hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 7776 666555554 4444457777777776665555666666677777777766665333334446667777777
Q ss_pred CCcCCCCCCccccCCCCCC--EEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccc
Q 047486 168 GNYFQGGVPSWLFTLPSLL--SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245 (776)
Q Consensus 168 ~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 245 (776)
+|.+++..|..++.+++|+ +|++++|.+.+..+......+|+.|++++|. ..+..+..+.+++...+....+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~-- 236 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE-- 236 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT--
T ss_pred cCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhc--
Confidence 7666665566666666666 6666666665543332222455555555543 12222233333222222111111
Q ss_pred cCccccCCCCCCCEEeccCCCCCccccccccccccC--CCCccEEeccCCCCCCcch-hhhCCcccceEecccCcccccc
Q 047486 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS--LPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRI 322 (776)
Q Consensus 246 i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~--l~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~~~ 322 (776)
.+...+ ++... +.. ..+|+.|++++|.++.++. .+..+++|++|++++|.++ .+
T Consensus 237 ----------~~~~~~--------i~~~~----~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 237 ----------DMDDED--------ISPAV----FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp ----------TSCCCC--------CCGGG----GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred ----------cccccc--------cChhH----hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence 000000 11111 111 1267788888888877764 5778888888888888887 56
Q ss_pred CCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEE
Q 047486 323 SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYL 402 (776)
Q Consensus 323 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 402 (776)
|..+ ..+++|++|++++|.+++. .|..+..+++|++|
T Consensus 294 p~~l-~~l~~L~~L~l~~n~l~~~------------------------------------------~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 294 PSGL-VGLSTLKKLVLSANKFENL------------------------------------------CQISASNFPSLTHL 330 (606)
T ss_dssp CSSC-CSCTTCCEEECTTCCCSBG------------------------------------------GGGCGGGCTTCSEE
T ss_pred Chhh-cccccCCEEECccCCcCcC------------------------------------------chhhhhccCcCCEE
Confidence 6554 5556665555555544433 33334444444444
Q ss_pred EccCCcCcccCCch-hhhcCCCccEEECCCCcCCccC--cccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486 403 SLSDNNLSGTIPPC-LGNFSTELITLHLKNNSLEGHI--HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK 479 (776)
Q Consensus 403 ~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 479 (776)
++++|.+.+.+|.. +..+ ++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred ECCCCCcccccchhhhhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 44444444334332 2222 24555555555544433 34455555555555555555555555555555555555555
Q ss_pred CccCcccch-hhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCC-Cc-ccccChHHhhhccccCce
Q 047486 480 NMISDSFPC-WLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFL-PR-RIFPSMEAMKNVDEQGRL 556 (776)
Q Consensus 480 n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~-p~-~~~~~l~~l~~l~~~~~~ 556 (776)
|++++..+. .+..+++|++|++++|.+.+..+... ..+++|+.|++++|++++.. |. ..+
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~--------------- 472 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL--------------- 472 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG---------------
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh---------------
Confidence 555544332 25555555555555555554444332 34555666666666555311 10 001
Q ss_pred ecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcE
Q 047486 557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 636 (776)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 636 (776)
..++.|+.|++++|++++..|..|+.+++|+.|+|++|++++.+|..|.+++.| .
T Consensus 473 ------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 473 ------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp ------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred ------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 125677888888888888888899999999999999999999999999999999 9
Q ss_pred EeccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486 637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 637 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 673 (776)
|||++|++++.+|..+..+++|+.|++++|++.+..+
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999888889999999999999999987554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-53 Score=484.09 Aligned_cols=303 Identities=23% Similarity=0.264 Sum_probs=250.7
Q ss_pred cCEEeccCcccCCCCC---CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC
Q 047486 354 ITTLDLRNNRIQGSIL---VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 430 (776)
Q Consensus 354 L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~ 430 (776)
++.+++++|.+++..+ ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+. +|++|+++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIK 333 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECC
Confidence 4444444444443322 23567778888888877 6788899999999999999999966677777776 89999999
Q ss_pred CCcCCccCc-ccccCCCCccEEEcCCCcCcCCC--ChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccc
Q 047486 431 NNSLEGHIH-DTFANASHLRSLDLNSNKLEGPL--PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY 507 (776)
Q Consensus 431 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 507 (776)
+|.+.+.++ ..+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 999986554 45999999999999999999776 778999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhccee
Q 047486 508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFR 587 (776)
Q Consensus 508 ~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 587 (776)
+..+... +..+++|+.|++++|.+++..|.. +.. ++.|+
T Consensus 414 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~---------------------------------------l~~L~ 452 (606)
T 3t6q_A 414 VKDAQSP-FQNLHLLKVLNLSHSLLDISSEQL-FDG---------------------------------------LPALQ 452 (606)
T ss_dssp CCTTCCT-TTTCTTCCEEECTTCCCBTTCTTT-TTT---------------------------------------CTTCC
T ss_pred Ccccchh-hhCcccCCEEECCCCccCCcCHHH-HhC---------------------------------------CCCCC
Confidence 7665442 367899999999999998765543 221 56789
Q ss_pred EEecCCCccccc---chhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486 588 AMDFSRNRFHGE---IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 664 (776)
Q Consensus 588 ~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 664 (776)
.|++++|++++. .+..++.+++|+.|++++|++++..|..|+++++|++|||++|++++.+|+.+..++.| +|+++
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 999999999873 33679999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 047486 665 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDG 705 (776)
Q Consensus 665 ~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~~ 705 (776)
+|++++.+|.. +..........+.+||+.|+|...+
T Consensus 532 ~N~l~~~~~~~-----~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 532 SNHISIILPSL-----LPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp SSCCCCCCGGG-----HHHHHTSSEEECTTCCEECSGGGHH
T ss_pred CCcccccCHhh-----cccCCCCCEEeCCCCCccccCCcHH
Confidence 99999766642 3333334556788999999997543
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5e-53 Score=500.51 Aligned_cols=549 Identities=22% Similarity=0.217 Sum_probs=311.9
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccC-CCCCCCCCcccCCCCcEEEccCCcccccccccccCCC
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYL-PKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLT 135 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~ 135 (776)
++|++|+|++|.+++..|.+|.++++|++|++++| ...+.+ |.. +.++++|++|+|++|.+.+..|..|++++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~-----f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEA-----FRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTT-----TSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHH-----hcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 55555555555555555555555555555555555 333333 222 34444455555555555555555555555
Q ss_pred CCCEEEccCCcccCCCchh--hcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCCCcCCC-CCCC--CCCc
Q 047486 136 RATEIAFASNHFTGQLPHH--VSGLSYLTTFDLSGNYFQGGVP-SWLFTLPSLLSIDLSKNMLNGPIDL-FQLP--NSLQ 209 (776)
Q Consensus 136 ~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~--~~L~ 209 (776)
+|++|+|++|.+++..|.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+. +..+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 5555555555555444333 5555555555555555554332 3455555555555555555443221 1111 4555
Q ss_pred EEEccCCcCCCCCCccccCCCC------CCEEECCCCcCccccCccccC--CCCCCCEEeccCCCCCccccccccccccC
Q 047486 210 DVRLEENEIRGTIPNSTFQLVN------LTILDLSSNNLSGAIRFDQFS--KLKKLQFLDLSNNSLLSFTSSANISIKYS 281 (776)
Q Consensus 210 ~L~L~~n~i~~~~~~~~~~l~~------L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 281 (776)
.|++++|.+.+..|..+..+++ |++|++++|.+.+.++..... ...+++.+.++.+.... .. .
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~---~~------~ 248 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---GF------G 248 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC---SS------S
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc---cc------c
Confidence 5566666555555555444443 667777776665444422111 22456666666443211 00 0
Q ss_pred CCCccEEeccCCCCCCc-chhhhC--CcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEe
Q 047486 282 LPSLKVLRFAYCNITEF-PGFLRN--SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLD 358 (776)
Q Consensus 282 l~~L~~L~l~~n~l~~l-p~~l~~--~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 358 (776)
.+.+... +..+.. .++|+.|++++|.+.+.. ...+..+++|+.|++++|.++.+.+..+.
T Consensus 249 ----------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------ 311 (844)
T 3j0a_A 249 ----------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFY------ 311 (844)
T ss_dssp ----------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTT------
T ss_pred ----------ccccCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhc------
Confidence 0000000 011111 234555555555554322 22224455555555555544444332221
Q ss_pred ccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccC
Q 047486 359 LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI 438 (776)
Q Consensus 359 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 438 (776)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+++..
T Consensus 312 ------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 312 ------------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTIH 378 (844)
T ss_dssp ------------TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCCS
T ss_pred ------------CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCccc
Confidence 123334444455555445555555666666666666666533333333333 5666666666655321
Q ss_pred cccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCccc-chhhcCCCCcCEEEccCCcccccCCCCCCCc
Q 047486 439 HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF-PCWLGSLHELKILVLRSNRFYGPLCNSNITF 517 (776)
Q Consensus 439 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 517 (776)
.+++|+.|++++|+++. +|.. ..+++.|++++|++++.. +..+..+++|++|++++|++.+..+.. ...
T Consensus 379 -----~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~ 448 (844)
T 3j0a_A 379 -----FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-TPS 448 (844)
T ss_dssp -----SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS-SSC
T ss_pred -----CCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc-ccc
Confidence 25566666666666663 2322 345677777777776542 223456777777777777776543322 224
Q ss_pred CCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc
Q 047486 518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH 597 (776)
Q Consensus 518 ~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 597 (776)
.+++|+.|++++|.+++..+...... ....++.|+.|+|++|+++
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~-----------------------------------~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWD-----------------------------------VFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSS-----------------------------------CSSCBCCEECCCCCHHHHT
T ss_pred cCCccccccCCCCccccccccccchh-----------------------------------hhcCcccccEEECCCCccc
Confidence 46778888888888874332211000 0011578899999999999
Q ss_pred ccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCC
Q 047486 598 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQ 677 (776)
Q Consensus 598 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 677 (776)
+..|..|..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..|. +|+.+++++|++.+..+.
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~--- 565 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL--- 565 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC---
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc---
Confidence 99999999999999999999999988777776 8999999999999999998764 688999999999876653
Q ss_pred CCcccccccccccCCCCCCCCCCCCCC
Q 047486 678 FNTFENDSYIGNIHLCGEPLTVRCSND 704 (776)
Q Consensus 678 ~~~~~~~~~~~n~~l~g~pl~~~C~~~ 704 (776)
..|......++..+||.|....|..+
T Consensus 566 -~~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 566 -STFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp -CSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred -HHHHHHHHhcCcccccccccCccCCc
Confidence 23444444567778888877788653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-53 Score=485.53 Aligned_cols=537 Identities=19% Similarity=0.172 Sum_probs=278.6
Q ss_pred CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486 35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114 (776)
Q Consensus 35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~ 114 (776)
++++.+++.++.. |..+ ++++++|+|++|.+++..+.+|.++++|++|++++| .+.+..|.. +.++++|+
T Consensus 14 ~~~~c~~~~l~~i-p~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~-----~~~l~~L~ 83 (606)
T 3vq2_A 14 ITYQCMDQKLSKV-PDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKA-----WHGLHHLS 83 (606)
T ss_dssp TEEECTTSCCSSC-CTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCTTCC
T ss_pred CceEccCCCcccC-CCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHH-----hhchhhcC
Confidence 3455555544443 3222 245555555555555444445555555555555555 454444433 33334455
Q ss_pred EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCC
Q 047486 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKN 193 (776)
Q Consensus 115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n 193 (776)
+|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 55555555555555555555555555555555554444555555555555555555553 34555555555555555555
Q ss_pred cCCCcCCC-CCCCC----CCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486 194 MLNGPIDL-FQLPN----SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268 (776)
Q Consensus 194 ~l~~~~~~-~~~~~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~ 268 (776)
.+++..+. +..+. .+++|++++|.+++..+..+ ...+|++|++++|.+.+......+.+++.|+.+++..+.+.
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 55543221 11111 23456666666653333333 33367777777776654444456666667766666544321
Q ss_pred ccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEec-ccCccccccCCCcccCCccCCeEeCcCccccccc
Q 047486 269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDL-SNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347 (776)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (776)
.... +..+. ...+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.++.++
T Consensus 243 ~~~~------------l~~~~------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 243 DERN------------LEIFE------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp TSCC------------CSCCC------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC
T ss_pred cCCc------------ccccC------hHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh
Confidence 1100 00000 0011111111 3445555 45555555554 355566666666665554443
Q ss_pred cccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEE
Q 047486 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITL 427 (776)
Q Consensus 348 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 427 (776)
. + ..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+. +|++|
T Consensus 302 ~--l------------------~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L 355 (606)
T 3vq2_A 302 D--V------------------PKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYL 355 (606)
T ss_dssp C--C------------------CTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEE
T ss_pred h--c------------------cccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCC-CCCEE
Confidence 1 1 1122333344444444 2333 22 4445555555554333222 122222 45555
Q ss_pred ECCCCcCCcc--CcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccc-hhhcCCCCcCEEEccCC
Q 047486 428 HLKNNSLEGH--IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP-CWLGSLHELKILVLRSN 504 (776)
Q Consensus 428 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n 504 (776)
++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 5555554433 24444455555555555555443 33445555555555555555554444 34455555555555555
Q ss_pred cccccCCCCCCCcCCCCccEEeCCCCcCCCC-CCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhh
Q 047486 505 RFYGPLCNSNITFPFQALRIIDLSHNEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL 583 (776)
Q Consensus 505 ~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (776)
++.+..+... ..+++|++|++++|.+++. +|.. +.. +
T Consensus 435 ~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~~---------------------------------------l 472 (606)
T 3vq2_A 435 NTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FAN---------------------------------------T 472 (606)
T ss_dssp CCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CTT---------------------------------------C
T ss_pred CCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hcc---------------------------------------C
Confidence 5554443332 3445555555555555442 2211 111 4
Q ss_pred cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccc-cccccc
Q 047486 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLN 662 (776)
Q Consensus 584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ 662 (776)
+.|+.|++++|++++..|..|+.+++|++|+|++|++++.+|..|.++++|++|||++|+++ .+|..+..++ +|++|+
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence 55667777777777777777777788888888888887777777777888888888888877 5666677775 478888
Q ss_pred CccCcceecCC
Q 047486 663 LSYNRLWGRIP 673 (776)
Q Consensus 663 ls~N~l~g~iP 673 (776)
+++|++.+..|
T Consensus 552 l~~N~~~c~c~ 562 (606)
T 3vq2_A 552 LTNNSVACICE 562 (606)
T ss_dssp CCSCCCCCSST
T ss_pred ccCCCcccCCc
Confidence 88777766544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-51 Score=473.76 Aligned_cols=543 Identities=19% Similarity=0.173 Sum_probs=377.5
Q ss_pred cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCE
Q 047486 60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATE 139 (776)
Q Consensus 60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 139 (776)
++++.+++.++ .+|..+. ++|++|++++| .+.+..+.. +.++++|++|++++|.+++..|.+|+++++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFN-PLKILKSYS-----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCC-CcCEeChhh-----ccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 45666666555 4454433 45555555555 444433333 333333555555555555444445555555555
Q ss_pred EEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCC
Q 047486 140 IAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR 219 (776)
Q Consensus 140 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~ 219 (776)
|++++|.+++..|.+|+++++|++|++++|.+++..+..+++++ +|++|++++|.++
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----------------------TLKKLNVAHNFIH 141 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-----------------------TCCEEECCSSCCC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC-----------------------CCCEEeCCCCccc
Confidence 55555555544455555555555555555555444444444444 5555555555554
Q ss_pred C-CCCccccCCCCCCEEECCCCcCccccCccccCCCCCCC----EEeccCCCCCccccccccccccCCCCccEEeccCCC
Q 047486 220 G-TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQ----FLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN 294 (776)
Q Consensus 220 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~----~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~ 294 (776)
+ .+|..+.++++|++|++++|.+.+ ++...+..+++|+ +|++++|.++.++... ....+|++|++++|.
T Consensus 142 ~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~-----~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 142 SCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA-----FQGIKLHELTLRGNF 215 (606)
T ss_dssp CCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT-----TTTCEEEEEEEESCC
T ss_pred ceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCccc-----ccCceeeeeeccCCc
Confidence 3 457777778888888888887774 3335555555443 7888888776555433 223378888888887
Q ss_pred CC--CcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEec-cCcccCCCCC--
Q 047486 295 IT--EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDL-RNNRIQGSIL-- 369 (776)
Q Consensus 295 l~--~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l-~~n~l~~~~~-- 369 (776)
++ .+|.++.+++.|+.+++..+.+.+... +..+ ....+.+.. -..++.+++ ..+.+.+.++
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~~~--~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~~~ 281 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LEIF--EPSIMEGLC---DVTIDEFRLTYTNDFSDDIVKF 281 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CSCC--CGGGGTTGG---GSEEEEEEECCCTTCCGGGGSC
T ss_pred cchhHHHHHhccccccccccccccccccCCc---------cccc--ChHHhhhhh---hccHhheecccccccccccccc
Confidence 75 456778888888888887655432110 0000 000000000 013445555 4445554443
Q ss_pred CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCcc
Q 047486 370 VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449 (776)
Q Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 449 (776)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+. +|++|++++|...+.. .+..+++|+
T Consensus 282 ~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~ 353 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLP-FLKSLTLTMNKGSISF--KKVALPSLS 353 (606)
T ss_dssp GGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCS-SCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred ccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCC-ccceeeccCCcCccch--hhccCCCCC
Confidence 34678889999999886 455 888999999999999999 58884 4 554 8999999999665443 677899999
Q ss_pred EEEcCCCcCcCC--CChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeC
Q 047486 450 SLDLNSNKLEGP--LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDL 527 (776)
Q Consensus 450 ~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdL 527 (776)
+|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..+.. .+..+++|+.|++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l 431 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS-AFLSLEKLLYLDI 431 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT-TTTTCTTCCEEEC
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh-hhhccccCCEEEC
Confidence 999999999876 48899999999999999999886 5588999999999999999999876632 2367899999999
Q ss_pred CCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc-cchhhhcc
Q 047486 528 SHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG-EIPEVLGN 606 (776)
Q Consensus 528 s~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~ 606 (776)
++|.+++..|..+ .. ++.|+.|++++|.+++ .+|..++.
T Consensus 432 ~~n~l~~~~~~~~-~~---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 432 SYTNTKIDFDGIF-LG---------------------------------------LTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp TTSCCEECCTTTT-TT---------------------------------------CTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cCCCCCccchhhh-cC---------------------------------------CCCCCEEECCCCcCCCcchHHhhcc
Confidence 9999997666442 21 5678999999999998 47889999
Q ss_pred CCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCccccccc
Q 047486 607 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSY 686 (776)
Q Consensus 607 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 686 (776)
+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++ .+|.. +..+.. .
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~--~~~l~~--~ 546 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI--LQHFPK--S 546 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC--GGGSCT--T
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh--Hhhhcc--c
Confidence 999999999999999999999999999999999999999999999999999999999999998 56764 222221 2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCC
Q 047486 687 IGNIHLCGEPLTVRCSNDGLPEA 709 (776)
Q Consensus 687 ~~n~~l~g~pl~~~C~~~~~~~~ 709 (776)
.....+.+||+.|+|...|...|
T Consensus 547 L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 547 LAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CCEEECCSCCCCCSSTTHHHHTT
T ss_pred CcEEEccCCCcccCCccHHHHHH
Confidence 34456788999999987554444
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-51 Score=482.92 Aligned_cols=531 Identities=21% Similarity=0.219 Sum_probs=375.6
Q ss_pred cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccc-cccccCCCCCC
Q 047486 60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSI-PTSIGNLTRAT 138 (776)
Q Consensus 60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~ 138 (776)
+..+.++++++ .+|. -.++|++|+|++| .+++..|.. +.++++|++|++++|...+.+ |.+|+++++|+
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N-~i~~i~~~~-----~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFN-YIRTVTASS-----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESC-CCCEECSSS-----CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCC-cCCccChhH-----CcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 35677777777 5565 3468888888888 777666665 556666888888888655555 67788888888
Q ss_pred EEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCcc--ccCCCCCCEEEccCCcCCCcCC--CCCCCCCCcEEEcc
Q 047486 139 EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSW--LFTLPSLLSIDLSKNMLNGPID--LFQLPNSLQDVRLE 214 (776)
Q Consensus 139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~ 214 (776)
+|+|++|.+++..|.+|+++++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..+ .+..+++|++|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 8888888888777888888888888888888888755554 7788888888888888776432 34445777777777
Q ss_pred CCcCCCCCCccccCC--CCCCEEECCCCcCccccCccccCCCCC------CCEEeccCCCCCccccccccccccCCCCcc
Q 047486 215 ENEIRGTIPNSTFQL--VNLTILDLSSNNLSGAIRFDQFSKLKK------LQFLDLSNNSLLSFTSSANISIKYSLPSLK 286 (776)
Q Consensus 215 ~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~~------L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~ 286 (776)
+|.+++..+..+..+ ++|+.|++++|.+.+..+ ..+..+++ |++|++++|.+..
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------------- 218 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTV----------------- 218 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSST-----------------
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCch-----------------
Confidence 777777777776666 677777777777765444 23333332 5555555554321
Q ss_pred EEeccCCCCCCcchhhh---CCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccc-----cccccCEEe
Q 047486 287 VLRFAYCNITEFPGFLR---NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH-----PWMNITTLD 358 (776)
Q Consensus 287 ~L~l~~n~l~~lp~~l~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~ 358 (776)
.++..+. ....+..+.++.+.+.... ..+.+...... ..++++.|+
T Consensus 219 ----------~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 219 ----------DITGNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp ----------TTTSGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred ----------hHHHHHHhhcCcccccceecccccccccc----------------cccccCCCChhhhhccccCCccEEE
Confidence 1121111 1133444444432221000 00111111110 113455555
Q ss_pred ccCcccCCCC---CCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCC
Q 047486 359 LRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 435 (776)
Q Consensus 359 l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 435 (776)
+++|.+.+.. +..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+. +|++|++++|.++
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIA 351 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCC
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-CCCEEECCCCCCC
Confidence 5555544332 23467788888888888888888899999999999999999866677777665 7999999999998
Q ss_pred ccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCC
Q 047486 436 GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI 515 (776)
Q Consensus 436 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 515 (776)
+..+..|..+++|++|+|++|.+++.. .+++|+.|++++|+++.. |. ...+++.|++++|++.+.... ..
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l~~~-~~ 421 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENLDIL-YF 421 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSSTTH-HH
T ss_pred ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccc-cc---cccccceeecccCccccCchh-hh
Confidence 888888999999999999999988532 378899999999988743 33 256788999999988763211 11
Q ss_pred CcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc
Q 047486 516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR 595 (776)
Q Consensus 516 ~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 595 (776)
...+++|+.|++++|++++..+...+.. ++.|+.|++++|.
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------------------------------~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTPSE---------------------------------------NPSLEQLFLGENM 462 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------------------CTTCCBCEEESCC
T ss_pred hhcCCccceeeCCCCccccccccccccc---------------------------------------CCccccccCCCCc
Confidence 2367889999999999886544322211 4678999999999
Q ss_pred cc-----ccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 596 FH-----GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 596 l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
++ +..+..|..+++|+.|+|++|++++.+|..|.++++|+.|||++|++++..|..+. ++|+.|++++|+++|
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence 97 45567789999999999999999999999999999999999999999988777776 899999999999999
Q ss_pred cCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047486 671 RIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSND 704 (776)
Q Consensus 671 ~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~ 704 (776)
.+|.. +..+... .+.|||+.|+|...
T Consensus 541 ~~~~~--~~~L~~l------~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 541 PNPDV--FVSLSVL------DITHNKFICECELS 566 (844)
T ss_dssp CCSCC--CSSCCEE------EEEEECCCCSSSCC
T ss_pred CChhH--hCCcCEE------EecCCCcccccccH
Confidence 88854 3333333 44556777777643
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-47 Score=433.91 Aligned_cols=254 Identities=18% Similarity=0.227 Sum_probs=215.4
Q ss_pred CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL 451 (776)
Q Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 451 (776)
+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. .+ ++|++|++++|.+.+..+. ..+++|++|
T Consensus 281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~--~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL--KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC--BC-SSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc--cc-cccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 567788888888877 577778888 9999999999988 77763 33 4799999999988776654 678999999
Q ss_pred EcCCCcCcCCC--ChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCC
Q 047486 452 DLNSNKLEGPL--PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529 (776)
Q Consensus 452 ~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~ 529 (776)
++++|.+++.. |..+..+++|++|++++|++.+..+. +..+++|++|++++|++.+..+.. .+..+++|++|++++
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISH 430 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECTT
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCcC
Confidence 99999998664 77889999999999999999876665 889999999999999998765532 236788999999999
Q ss_pred CcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc-ccchhhhccCC
Q 047486 530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH-GEIPEVLGNFK 608 (776)
Q Consensus 530 n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~ 608 (776)
|.+++..|.. +.. ++.|+.|++++|.++ +.+|..++.++
T Consensus 431 n~l~~~~~~~-~~~---------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 431 THTRVAFNGI-FNG---------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp SCCEECCTTT-TTT---------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred Ccccccchhh-hhc---------------------------------------CCcCcEEECcCCcCccccchhhhhccc
Confidence 9988765543 221 567899999999998 67899999999
Q ss_pred CCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCC
Q 047486 609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675 (776)
Q Consensus 609 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 675 (776)
+|+.|++++|++++..|..|.++++|++|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999999999988999999999999999999999988889999999999999999999988864
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-46 Score=427.01 Aligned_cols=487 Identities=18% Similarity=0.191 Sum_probs=264.3
Q ss_pred EEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEE
Q 047486 62 LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIA 141 (776)
Q Consensus 62 L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 141 (776)
.+.+++.++ .+|..+. ++|++|++++| .+.+..|.. +.++++|++|++++|.+++..|.+|+++++|++|+
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFN-KITYIGHGD-----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSS-CCCEECSST-----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCccc-cccccCC--CCccEEECcCC-ccCccChhh-----hhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 344455554 4444433 45555555555 555444433 33444466666666666555555666666666666
Q ss_pred ccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCcCCCcCC--CCCCCCCCcEEEccCCcC
Q 047486 142 FASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKNMLNGPID--LFQLPNSLQDVRLEENEI 218 (776)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~n~i 218 (776)
+++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+..+ .+..+++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 66666665555556666666666666666654 234556666666666666665333221 233346666666666666
Q ss_pred CCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCC-
Q 047486 219 RGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE- 297 (776)
Q Consensus 219 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 297 (776)
++..|..+..+++|++|++++|.+. .++...+..+++|++|++++|+++.++... ......+++|+.|++++|.++.
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHH
T ss_pred cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchh
Confidence 6666667777777777777777665 444344455667777777777654432110 0111234455555555554431
Q ss_pred ----cchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCC
Q 047486 298 ----FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPP 373 (776)
Q Consensus 298 ----lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 373 (776)
++..+..+++|+.+++++|.+.+ ...... .....+...+
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~-------------------------~~~~~~------------~~~~~~~~l~ 281 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNG-------------------------LGDFNP------------SESDVVSELG 281 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEEC-------------------------CSCCCC------------CTTTCCCCCT
T ss_pred HHHHHHHHhhhhccccccccccccccc-------------------------cccccc------------cchhhhhhhc
Confidence 22223344455555555554432 110000 0000111223
Q ss_pred CCcEEEccCCcCcc-----CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCc---ccccCC
Q 047486 374 STKVLLVSNNKLSG-----KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH---DTFANA 445 (776)
Q Consensus 374 ~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l 445 (776)
+++.+++.++.+.. ..+..+...++|++|++++|.+. .+|..++...++|++|++++|.+++..+ ..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 33344444333321 11222233456677777777665 6666554323367777777776665543 235556
Q ss_pred CCccEEEcCCCcCcCCCC--hhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCcc
Q 047486 446 SHLRSLDLNSNKLEGPLP--RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR 523 (776)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 523 (776)
++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~--------------- 424 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV--------------- 424 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC---------------
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc---------------
Confidence 666666666666654432 34556666666666666665 344445555555555555554432
Q ss_pred EEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhh
Q 047486 524 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603 (776)
Q Consensus 524 ~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 603 (776)
+|... .+.|+.|++++|++++.+
T Consensus 425 ------------l~~~~------------------------------------------~~~L~~L~Ls~N~l~~~~--- 447 (549)
T 2z81_A 425 ------------VKTCI------------------------------------------PQTLEVLDVSNNNLDSFS--- 447 (549)
T ss_dssp ------------CCTTS------------------------------------------CTTCSEEECCSSCCSCCC---
T ss_pred ------------ccchh------------------------------------------cCCceEEECCCCChhhhc---
Confidence 22111 124556666666666532
Q ss_pred hccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 604 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 673 (776)
..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|++|++++|++.|..|
T Consensus 448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 35677777777777776 4554 4567777777777777777777777777777777777777776655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-47 Score=431.22 Aligned_cols=513 Identities=21% Similarity=0.203 Sum_probs=355.1
Q ss_pred CCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEE
Q 047486 7 LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQIL 86 (776)
Q Consensus 7 L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L 86 (776)
.++++.++.+++ .+|..+. +++++|++++|.+.+..+..+..+ ++|++|+|++|.+++..+..|.++++|++|
T Consensus 9 ~~~~~c~~~~l~----~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFY----KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCS----SCCSSSC--SSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCcc----ccCCCcc--ccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEE
Confidence 456777766663 3443322 568888888888888777778888 888888888888887777778888888888
Q ss_pred eccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccC-CCchhhcCCCCCCEEE
Q 047486 87 FLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFD 165 (776)
Q Consensus 87 ~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~ 165 (776)
++++| .+.+..|.. +..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|+
T Consensus 82 ~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 82 ILTGN-PIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp ECTTC-CCCEECTTT-----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred eCcCC-cCCccCHhh-----hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 88888 777655555 5556668888888888886555568888888888888888876 3678888888888888
Q ss_pred ccCCcCCCCCCccccCCCCC----CEEEccCCcCCCcCCC-CCCCCCCcEEEccCCcCCC-CCCccccCCCCCCEEECCC
Q 047486 166 LSGNYFQGGVPSWLFTLPSL----LSIDLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRG-TIPNSTFQLVNLTILDLSS 239 (776)
Q Consensus 166 L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~ 239 (776)
+++|.+++..+..++.+++| ++|++++|.+.+..+. +.. .+|+.|++++|.... .++..+..++.++.+.+..
T Consensus 156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeecc
Confidence 88888887777777777777 7777777777664433 233 366677766654321 2233444555555544432
Q ss_pred CcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCC--CCccEEeccCC-CCC-CcchhhhCCcccceEeccc
Q 047486 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL--PSLKVLRFAYC-NIT-EFPGFLRNSEELYLLDLSN 315 (776)
Q Consensus 240 n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l--~~L~~L~l~~n-~l~-~lp~~l~~~~~L~~L~L~~ 315 (776)
..+. ....++. +.... +..+ -.++.+++.++ .+. .+|..+..+++|+.|++++
T Consensus 235 ~~~~---------~~~~l~~--~~~~~------------~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 235 GEFR---------NEGNLEK--FDKSA------------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp EECC---------CCSSCEE--CCTTT------------TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred cccc---------Cchhhhh--cchhh------------hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 2211 0001110 00000 0011 12344445444 222 3445566667777777777
Q ss_pred CccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccC
Q 047486 316 NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICS 395 (776)
Q Consensus 316 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 395 (776)
|.+. .+|... ..+ +|++|++++|.++.++...++ +|+.|++++|.+.+..+. ..
T Consensus 292 ~~l~-~l~~~~-~~~-~L~~L~l~~n~~~~l~~~~l~---------------------~L~~L~l~~n~~~~~~~~--~~ 345 (570)
T 2z63_A 292 VTIE-RVKDFS-YNF-GWQHLELVNCKFGQFPTLKLK---------------------SLKRLTFTSNKGGNAFSE--VD 345 (570)
T ss_dssp CEEC-SCCBCC-SCC-CCSEEEEESCBCSSCCBCBCS---------------------SCCEEEEESCBSCCBCCC--CB
T ss_pred ccch-hhhhhh-ccC-CccEEeeccCcccccCccccc---------------------ccCEEeCcCCcccccccc--cc
Confidence 7666 455544 344 666666666666554444444 445555555555444443 56
Q ss_pred CCCCCEEEccCCcCcccC--CchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCC
Q 047486 396 LSSLQYLSLSDNNLSGTI--PPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKL 472 (776)
Q Consensus 396 ~~~L~~L~Ls~n~l~~~~--p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L 472 (776)
+++|++|++++|.+++.. |..+..+. +|++|++++|.+++..+. +..+++|++|++++|.+++..+ ..+..+++|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 778888888888877433 55666665 799999999888876555 8889999999999999987766 578889999
Q ss_pred cEEEcCCCccCcccchhhcCCCCcCEEEccCCccc-ccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhcc
Q 047486 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY-GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551 (776)
Q Consensus 473 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~ 551 (776)
++|++++|++.+..|..+..+++|++|++++|++. +.+|... ..
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~--------------------------------- 468 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TE--------------------------------- 468 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TT---------------------------------
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh--hc---------------------------------
Confidence 99999999999888889999999999999988876 3343222 22
Q ss_pred ccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccccc
Q 047486 552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 631 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 631 (776)
++.|+.|++++|++++..|..|+.+++|+.|++++|++++..|..|.++
T Consensus 469 -------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 469 -------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp -------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------------------------------ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 3455666777777776778888999999999999999999888889999
Q ss_pred CCCcEEeccCccCcCCCch
Q 047486 632 TALESLDLSFNKLDGRIPE 650 (776)
Q Consensus 632 ~~L~~L~Ls~N~l~~~~p~ 650 (776)
++|+.|++++|++++..|.
T Consensus 518 ~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCBCCCTTT
T ss_pred cCCcEEEecCCcccCCCcc
Confidence 9999999999999988775
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-46 Score=422.04 Aligned_cols=493 Identities=18% Similarity=0.203 Sum_probs=292.7
Q ss_pred CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCE
Q 047486 6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQI 85 (776)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~ 85 (776)
...+.|.+++.++ .+|..+. ++|++|++++|.+.+..|..+..+ ++|++|++++|.+++..|.+|.++++|++
T Consensus 6 ~~~~c~~~~~~l~----~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 6 ASGVCDGRSRSFT----SIPSGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp TTSEEECTTSCCS----SCCSCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCceEECCCCccc----cccccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCE
Confidence 3444556655553 3333222 566666666666666555556666 66666666666666555566666666666
Q ss_pred EeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCc-hhhcCCCCCCE
Q 047486 86 LFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG-SIPTSIGNLTRATEIAFASNHFTGQLP-HHVSGLSYLTT 163 (776)
Q Consensus 86 L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~ 163 (776)
|++++| .+.+..|.. +.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..|.++++|++
T Consensus 79 L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 79 LDLSDN-HLSSLSSSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp EECTTS-CCCSCCHHH-----HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred EECCCC-ccCccCHHH-----hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 666666 555444333 3344446666666666654 234556666666666666665332333 45566666666
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCC-CCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcC
Q 047486 164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLF-QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNL 242 (776)
Q Consensus 164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 242 (776)
|++++|.+++..|..++.+++|++|++++|.+....+.+ ..+++|++|++++|.+++....
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------ 214 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS------------------ 214 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC------------------
T ss_pred eeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc------------------
Confidence 666666666555666666666666666655543322111 1124455555555544432100
Q ss_pred ccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch-------hhhCCcccceEeccc
Q 047486 243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG-------FLRNSEELYLLDLSN 315 (776)
Q Consensus 243 ~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~~~~L~~L~L~~ 315 (776)
+......+++|++|++++|.+..............+++|+.+++++|.+..+++ .+..+++|+.|++.+
T Consensus 215 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 215 ----PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp ----CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ----ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 111223344455555555443221111111112234555666665555433221 123344455555554
Q ss_pred CccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccc-c
Q 047486 316 NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-C 394 (776)
Q Consensus 316 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~ 394 (776)
+.+..... +..++. .....++++.|++++|.+. .+|..+ .
T Consensus 291 ~~i~~~~~---~~~l~~-----------------------------------~~~~~~~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 291 LHIPQFYL---FYDLST-----------------------------------VYSLLEKVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp CBCSCGGG---SCCCCH-----------------------------------HHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred cccchhhh---cccchh-----------------------------------hhhhcccceEEEeccCccc-cCCHHHHh
Confidence 43321100 000000 0001245667777777776 566655 5
Q ss_pred CCCCCCEEEccCCcCcccCCch---hhhcCCCccEEECCCCcCCccCc--ccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486 395 SLSSLQYLSLSDNNLSGTIPPC---LGNFSTELITLHLKNNSLEGHIH--DTFANASHLRSLDLNSNKLEGPLPRSLAKC 469 (776)
Q Consensus 395 ~~~~L~~L~Ls~n~l~~~~p~~---~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 469 (776)
.+++|++|++++|++.+.+|.. +..++ +|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 7999999999999998766532 44444 89999999999987653 56889999999999999999 678888999
Q ss_pred CCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhh
Q 047486 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKN 549 (776)
Q Consensus 470 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~ 549 (776)
++|++|++++|+++... ..+ .++|++|++++|++++.. ..
T Consensus 410 ~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~------~~------------------------------- 449 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS------LF------------------------------- 449 (549)
T ss_dssp TTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC------CC-------------------------------
T ss_pred ccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc------cc-------------------------------
Confidence 99999999999987532 211 134555555555544321 12
Q ss_pred ccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccc
Q 047486 550 VDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629 (776)
Q Consensus 550 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 629 (776)
++.|+.|++++|+++ .+|. ...+++|+.|+|++|++++.+|..|.
T Consensus 450 ---------------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 450 ---------------------------------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp ---------------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred ---------------------------------CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 345566666666666 4454 45688999999999999998888899
Q ss_pred ccCCCcEEeccCccCcCCCc
Q 047486 630 NMTALESLDLSFNKLDGRIP 649 (776)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~~p 649 (776)
.+++|+.|++++|++++..|
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHH
T ss_pred cCcccCEEEecCCCccCCCc
Confidence 99999999999999988776
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-46 Score=429.34 Aligned_cols=363 Identities=23% Similarity=0.270 Sum_probs=231.5
Q ss_pred CCcccccccccccCCCCCCEEEccCCcccCC-----------------Cchhhc--CCCCCCEEEccCCcCCCCCCcccc
Q 047486 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQ-----------------LPHHVS--GLSYLTTFDLSGNYFQGGVPSWLF 180 (776)
Q Consensus 120 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~ 180 (776)
.|++++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 578888 899999999999999999999985 888888 999999999999999999999999
Q ss_pred CCCCCCEEEccCCc-CCC-cCCC-CC------CCCCCcEEEccCCcCCCCCCc--cccCCCCCCEEECCCCcCccccCcc
Q 047486 181 TLPSLLSIDLSKNM-LNG-PIDL-FQ------LPNSLQDVRLEENEIRGTIPN--STFQLVNLTILDLSSNNLSGAIRFD 249 (776)
Q Consensus 181 ~l~~L~~L~l~~n~-l~~-~~~~-~~------~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~i~~~ 249 (776)
++++|++|++++|. +++ .+|. +. .+++|++|++++|.++ .+|. .+..+++|++|++++|.+.|.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 99999999999997 765 3332 11 1256666666666665 5555 56666666666666666655554
Q ss_pred ccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcc-cceEecccCccccccCCCccc
Q 047486 250 QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEE-LYLLDLSNNRIQGRISKSDSP 328 (776)
Q Consensus 250 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~ 328 (776)
.+..+++|++|++++|. ++.+|..+..+++ |+.|++++|.++ .+|..+ .
T Consensus 348 ~~~~l~~L~~L~L~~N~----------------------------l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~-~ 397 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQ----------------------------ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF-D 397 (636)
T ss_dssp CCEEEEEESEEECCSSE----------------------------EEECCTTSEEECTTCCEEECCSSCCS-SCCSCC-C
T ss_pred hhCCCCCCCEEECCCCc----------------------------cccccHhhhhhcccCcEEEccCCcCc-ccchhh-h
Confidence 44444444444444444 3334555555555 666666666555 444322 1
Q ss_pred CCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCcccc-------CCCCCCE
Q 047486 329 GWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC-------SLSSLQY 401 (776)
Q Consensus 329 ~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~ 401 (776)
..+ +++|+.|++++|.+.+.+|..+. .+++|++
T Consensus 398 ~~~----------------------------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 398 AKS----------------------------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp TTC----------------------------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred hcc----------------------------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 111 11233444444444444444444 4556777
Q ss_pred EEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCC-------CCccEEEcCCCcCcCCCChhhh--cCCCC
Q 047486 402 LSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA-------SHLRSLDLNSNKLEGPLPRSLA--KCIKL 472 (776)
Q Consensus 402 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L 472 (776)
|++++|+++ .+|..++...++|++|++++|.++.+.+..+... ++|+.|+|++|+++ .+|..+. .+++|
T Consensus 438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 777777776 5665555433366777777766664333333322 26666666666666 4555554 66666
Q ss_pred cEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccc
Q 047486 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 552 (776)
Q Consensus 473 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~ 552 (776)
+.|++++|++++ +|..+..+++|++|++++|+ +
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~--------------------~-------------------------- 548 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR--------------------D-------------------------- 548 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB--------------------C--------------------------
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCc--------------------c--------------------------
Confidence 666666666665 55555555555555555443 1
Q ss_pred cCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccC
Q 047486 553 QGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 632 (776)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 632 (776)
+++|++.+.+|..++.+++|++|+|++|++ +.+|..+. +
T Consensus 549 --------------------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 587 (636)
T 4eco_A 549 --------------------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P 587 (636)
T ss_dssp --------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred --------------------------------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence 234555556677777788888888888888 46777655 6
Q ss_pred CCcEEeccCccCcC
Q 047486 633 ALESLDLSFNKLDG 646 (776)
Q Consensus 633 ~L~~L~Ls~N~l~~ 646 (776)
+|+.|||++|++..
T Consensus 588 ~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 588 NISVLDIKDNPNIS 601 (636)
T ss_dssp TCCEEECCSCTTCE
T ss_pred cCCEEECcCCCCcc
Confidence 78888888887663
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-46 Score=428.74 Aligned_cols=473 Identities=19% Similarity=0.236 Sum_probs=291.0
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCC------cccCCCCcEEEccCCccccccccc
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSP------LRELDLLSVLDIGFCNFTGSIPTS 130 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~------l~~L~~L~~L~Ls~n~l~~~~~~~ 130 (776)
.+++.|+|+++.+.|.+|.+++++++|++|+|++| .+... +..+.... -..+..|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N-~~~~~-~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH-GEKVN-ERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCG-GGGGT-CCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCC-ccccC-CccccccccccCchHHHHHHHH-hhHHHhhhccCchhh
Confidence 47999999999999999999999999999999998 54211 00011000 01133366 777777777766665
Q ss_pred ccCC-CCCCEEEccCCcccCCCchhhcCCCCCCEEEc--cCCcCCCCCCccccCCCCCCEEEccCCcCCCc---------
Q 047486 131 IGNL-TRATEIAFASNHFTGQLPHHVSGLSYLTTFDL--SGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP--------- 198 (776)
Q Consensus 131 l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------- 198 (776)
+..+ ..+..+++....+.. .....++.+.+ .+|.+++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 5421 111122222111110 01112222222 2456665 666677777777777777776662
Q ss_pred ---------CCCCC--CCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCc-Ccc-ccCccccCCCCCCCEEeccCC
Q 047486 199 ---------IDLFQ--LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN-LSG-AIRFDQFSKLKKLQFLDLSNN 265 (776)
Q Consensus 199 ---------~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~i~~~~~~~l~~L~~L~Ls~n 265 (776)
++.+. .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+| ..+..+
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L----------- 298 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK-DDWQAL----------- 298 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH-HHHHHH-----------
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch-HHHHhh-----------
Confidence 22222 22444444444444444555555555555555555555 544 333 122211
Q ss_pred CCCccccccccccccCCCCccEEeccCCCCCCcch--hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccc
Q 047486 266 SLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG--FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFM 343 (776)
Q Consensus 266 ~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 343 (776)
..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.++|.+| .+..+++|++|++++|.+
T Consensus 299 -----------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 299 -----------ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp -----------HHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEE
T ss_pred -----------hccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcc
Confidence 001123566666666666666777 78888888888888888887777 335555555554444433
Q ss_pred cccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCC-CCEEEccCCcCcccCCchhhhcC-
Q 047486 344 THIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSS-LQYLSLSDNNLSGTIPPCLGNFS- 421 (776)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~- 421 (776)
+ .+|..+..+++ |++|++++|.++ .+|..+....
T Consensus 366 ~-------------------------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 366 T-------------------------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp E-------------------------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred c-------------------------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 3 34455666666 777777777766 6665544321
Q ss_pred CCccEEECCCCcCCccCccccc-------CCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCC
Q 047486 422 TELITLHLKNNSLEGHIHDTFA-------NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLH 494 (776)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 494 (776)
++|++|++++|.+++..|..+. .+++|++|+|++|.+++..+..+..+++|++|++++|+++...+..+....
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 2466666666666666666665 556677777777777644444455566666666666666632222222111
Q ss_pred CcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccc-cChHHhhhccccCceecccCccccceEEEEec
Q 047486 495 ELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF-PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573 (776)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~-~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
. ....+++|+.|++++|+++ .+|..++ ..
T Consensus 482 ~-------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------------------ 511 (636)
T 4eco_A 482 E-------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATT------------------------------ 511 (636)
T ss_dssp E-------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTT------------------------------
T ss_pred c-------------------cccccCCccEEECcCCcCC-ccChhhhhcc------------------------------
Confidence 0 0012336777777777777 5665432 11
Q ss_pred cchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeC------CCCcCcccCCccccccCCCcEEeccCccCcCC
Q 047486 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNL------SHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647 (776)
Q Consensus 574 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 647 (776)
++.|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+.++++|++|||++|++ +.
T Consensus 512 ---------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 512 ---------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp ---------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred ---------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 5677888888888887 7888889999999999 56889999999999999999999999999 68
Q ss_pred CchhhccccccccccCccCcceec
Q 047486 648 IPEQLLSVTALALLNLSYNRLWGR 671 (776)
Q Consensus 648 ~p~~l~~l~~L~~L~ls~N~l~g~ 671 (776)
+|..+. ++|+.|++++|++...
T Consensus 581 ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 581 VNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCSCCC--TTCCEEECCSCTTCEE
T ss_pred cCHhHh--CcCCEEECcCCCCccc
Confidence 888766 7999999999988743
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-44 Score=419.73 Aligned_cols=450 Identities=23% Similarity=0.247 Sum_probs=267.1
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEec-cCCCCccccCCCCCCCC------------------------------
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFL-NLNSQLTGYLPKSNWSS------------------------------ 105 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~p~~~~~~------------------------------ 105 (776)
.+++.|+|+++.+.|.+|.+++++++|++|+| ++| .+.|..|......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57888888888888888888888888888888 666 6666533210000
Q ss_pred --------------Cc--ccCCCCcEEEcc--CCcccccccccccCCCCCCEEEccCCcccC-----------------C
Q 047486 106 --------------PL--RELDLLSVLDIG--FCNFTGSIPTSIGNLTRATEIAFASNHFTG-----------------Q 150 (776)
Q Consensus 106 --------------~l--~~L~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~ 150 (776)
.. .....++.+.+. .|++++ +|..|+++++|++|+|++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 011112333333 366666 67777777777777777777776 2
Q ss_pred Cchhhc--CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCc-CCCcCCCCCCCCCCcEEEccCCcCCCCCCcccc
Q 047486 151 LPHHVS--GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNM-LNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF 227 (776)
Q Consensus 151 ~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 227 (776)
+|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|. +++. .+|..++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~----------------------~iP~~i~ 538 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA----------------------QLKADWT 538 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH----------------------HHHHHHH
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc----------------------cchHHHH
Confidence 666655 77777777777777777777777777777777777776 5540 2222222
Q ss_pred -------CCCCCCEEECCCCcCccccCc-cccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc
Q 047486 228 -------QLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299 (776)
Q Consensus 228 -------~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp 299 (776)
.+++|++|++++|.+. .+|. ..+.++++|++|++++|.++.++ .+..+++|+.|++++|.++.+|
T Consensus 539 ~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp------~~~~L~~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 539 RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE------AFGTNVKLTDLKLDYNQIEEIP 611 (876)
T ss_dssp HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC------CCCTTSEESEEECCSSCCSCCC
T ss_pred hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch------hhcCCCcceEEECcCCccccch
Confidence 2224555555555444 4431 14444555555555555443222 1234555555555555555566
Q ss_pred hhhhCCcc-cceEecccCccccccCCCcccCCc--cCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCc
Q 047486 300 GFLRNSEE-LYLLDLSNNRIQGRISKSDSPGWK--SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTK 376 (776)
Q Consensus 300 ~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 376 (776)
..+..+++ |+.|++++|.++ .+|..+ ..++ +|+.|++++|.+++.. |
T Consensus 612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~-~~~~~~~L~~L~Ls~N~l~g~i---------------------p------- 661 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSVYVMGSVDFSYNKIGSEG---------------------R------- 661 (876)
T ss_dssp TTSCEECTTCCEEECCSSCCC-SCCSCC-CTTCSSCEEEEECCSSCTTTTS---------------------S-------
T ss_pred HHHhhccccCCEEECcCCCCC-cCchhh-hccccCCCCEEECcCCcCCCcc---------------------c-------
Confidence 66666776 777777777776 555432 2221 1333333333322211 0
Q ss_pred EEEccCCcCccCCCcccc--CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCccccc-------CCCC
Q 047486 377 VLLVSNNKLSGKIPPSIC--SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA-------NASH 447 (776)
Q Consensus 377 ~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~l~~ 447 (776)
.++..+. .+++|+.|++++|.+. .+|..++...++|+.|++++|.++.+.+..+. ++++
T Consensus 662 -----------~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 662 -----------NISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp -----------SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred -----------cchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 0001111 2235666666666665 55555543333566666666666533333332 2236
Q ss_pred ccEEEcCCCcCcCCCChhhh--cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEE
Q 047486 448 LRSLDLNSNKLEGPLPRSLA--KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII 525 (776)
Q Consensus 448 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 525 (776)
|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------------------- 787 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------------------- 787 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------------------
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC--------------------
Confidence 777777777776 4555554 66677777777776665 45556566666666555543
Q ss_pred eCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhc
Q 047486 526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG 605 (776)
Q Consensus 526 dLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 605 (776)
+ +++|++.+.+|..|+
T Consensus 788 ~----------------------------------------------------------------ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 788 D----------------------------------------------------------------AEGNRILRQWPTGIT 803 (876)
T ss_dssp C----------------------------------------------------------------TTCCBCCCCCCTTGG
T ss_pred C----------------------------------------------------------------cccccccccChHHHh
Confidence 1 234555666777788
Q ss_pred cCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcc
Q 047486 606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668 (776)
Q Consensus 606 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 668 (776)
.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 888899999999988 57887765 5899999999988877667776666667777777765
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.3e-44 Score=412.91 Aligned_cols=533 Identities=19% Similarity=0.180 Sum_probs=365.6
Q ss_pred CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486 35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114 (776)
Q Consensus 35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~ 114 (776)
++.+-++..++.+ |.. +|+++++|+|++|.|++..+.+|.++++|++|+|++| .+.+..|.. |.++++|+
T Consensus 34 ~~~~c~~~~l~~v-P~~---lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-----f~~L~~L~ 103 (635)
T 4g8a_A 34 ITYQCMELNFYKI-PDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLS 103 (635)
T ss_dssp TEEECTTSCCSSC-CSS---SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCTTCC
T ss_pred CEEECCCCCcCcc-CCC---CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhH-----hcCCCCCC
Confidence 3455555556554 543 4578999999999998777788999999999999999 887655555 66667799
Q ss_pred EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCC
Q 047486 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKN 193 (776)
Q Consensus 115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n 193 (776)
+|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|
T Consensus 104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 99999999987777788999999999999999987777789999999999999999875 45788888999999999999
Q ss_pred cCCCcCCC-C----CCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486 194 MLNGPIDL-F----QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268 (776)
Q Consensus 194 ~l~~~~~~-~----~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~ 268 (776)
.+++..+. + ........++++.|.+... +........++.+++.+|.....+....+..++.++...+..+...
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred cccccccccccchhhhhhhhhhhhcccCccccc-CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence 88764432 2 2223455778888887743 3334444566777887776654444456666777766655433211
Q ss_pred ccccccccccccCCCCccEEeccCCCCCC-cchhhhCCcccceEecccCccccc--cCCCcccCCccCCeEeCcCccccc
Q 047486 269 SFTSSANISIKYSLPSLKVLRFAYCNITE-FPGFLRNSEELYLLDLSNNRIQGR--ISKSDSPGWKSLIDLDLSNNFMTH 345 (776)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~ 345 (776)
.... +.. ....+.....+...++..+..... .....+.....++.+.+.++.+..
T Consensus 263 ~~~~----------------------l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (635)
T 4g8a_A 263 NEGN----------------------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER 320 (635)
T ss_dssp TSCC----------------------CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred cccc----------------------cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc
Confidence 1000 000 011122223333333322221100 011112344555566665555554
Q ss_pred ccc-ccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc--cCCchhhhcCC
Q 047486 346 IEL-HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG--TIPPCLGNFST 422 (776)
Q Consensus 346 ~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~ 422 (776)
+.. ....+++.|++.+|.+.+..+..+..++.+++..|.+... .....+++|+.+++++|.+.. ..+.......
T Consensus 321 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~- 397 (635)
T 4g8a_A 321 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI- 397 (635)
T ss_dssp CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS-
T ss_pred ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhh-
Confidence 433 2334566677777766665555667777777777776543 234567889999999988752 3455555554
Q ss_pred CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEc
Q 047486 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL 501 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 501 (776)
+|+.+++..+.+... +..+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+..++.|++|++
T Consensus 398 ~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 398 SLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 799999998887653 4567789999999999888776544 56888999999999999999999999999999999999
Q ss_pred cCCcccccC-CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHH
Q 047486 502 RSNRFYGPL-CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQ 580 (776)
Q Consensus 502 ~~n~l~~~~-~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (776)
++|.+.+.+ |..+ ..
T Consensus 477 s~N~~~~~~~~~~~--~~-------------------------------------------------------------- 492 (635)
T 4g8a_A 477 AGNSFQENFLPDIF--TE-------------------------------------------------------------- 492 (635)
T ss_dssp TTCEEGGGEECSCC--TT--------------------------------------------------------------
T ss_pred hhcccccccCchhh--hh--------------------------------------------------------------
Confidence 988754432 2211 22
Q ss_pred HhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccc-cccc
Q 047486 581 KILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALA 659 (776)
Q Consensus 581 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~ 659 (776)
++.|+.|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|||++|++++..|+.+..+ ++|+
T Consensus 493 --l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 493 --LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp --CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred --ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 3345566666666666666777777777777777777777777777777778888888887777777777776 5677
Q ss_pred cccCccCccee
Q 047486 660 LLNLSYNRLWG 670 (776)
Q Consensus 660 ~L~ls~N~l~g 670 (776)
+|++++|++.+
T Consensus 571 ~L~L~~Np~~C 581 (635)
T 4g8a_A 571 FLNLTQNDFAC 581 (635)
T ss_dssp EEECTTCCBCC
T ss_pred EEEeeCCCCcc
Confidence 77777777754
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=406.56 Aligned_cols=455 Identities=18% Similarity=0.143 Sum_probs=281.2
Q ss_pred cEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 047486 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193 (776)
Q Consensus 114 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 193 (776)
++||+++|+++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35666666666 4555444 56666666666666655566666666666666666666655666666666666666666
Q ss_pred cCCCcCCCCCCCCCCcEEEccCCcCCC-CCCccccCCCCCCEEECCCCcCccccCccccCCCCCC--CEEeccCCCC--C
Q 047486 194 MLNGPIDLFQLPNSLQDVRLEENEIRG-TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL--QFLDLSNNSL--L 268 (776)
Q Consensus 194 ~l~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L--~~L~Ls~n~i--~ 268 (776)
.++..... .+++|++|++++|.+++ .+|..++.+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccc
Confidence 66643222 33677777777777765 467788888888888888887763 345566666 7777777775 1
Q ss_pred ccccccccccccCCC-CccEEeccCCCCC-Ccc-hhhhCCcccceEecccCc-------cccccCCCcccCCccCCeEeC
Q 047486 269 SFTSSANISIKYSLP-SLKVLRFAYCNIT-EFP-GFLRNSEELYLLDLSNNR-------IQGRISKSDSPGWKSLIDLDL 338 (776)
Q Consensus 269 ~~~~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp-~~l~~~~~L~~L~L~~n~-------l~~~~~~~~~~~l~~L~~L~l 338 (776)
..... .+..+. ....+++++|.+. .++ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++
T Consensus 154 ~~~~~----~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l 227 (520)
T 2z7x_B 154 KEDPE----GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTL 227 (520)
T ss_dssp SCCTT----TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEE
T ss_pred ccccc----cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccc
Confidence 11110 011111 1223444444432 222 234455666666666654 443333 1244555555555
Q ss_pred cCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccc-----cCCCCCCEEEccCCcCcccC
Q 047486 339 SNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-----CSLSSLQYLSLSDNNLSGTI 413 (776)
Q Consensus 339 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~ 413 (776)
++|.+++........ ....++|++|++++|.+.+.+|..+ ..++.|+.+++++|.+ .+
T Consensus 228 ~~~~l~~~~~~~~~~---------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~ 290 (520)
T 2z7x_B 228 NNIETTWNSFIRILQ---------------LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF 290 (520)
T ss_dssp EEEEEEHHHHHHHHH---------------HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred cccccCHHHHHHHHH---------------HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence 554443322110000 0012467777777777777778777 8889999999999988 56
Q ss_pred C-chhhhc--CCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCc--ccch
Q 047486 414 P-PCLGNF--STELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD--SFPC 488 (776)
Q Consensus 414 p-~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~ 488 (776)
| ..+... ..+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|.
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence 6 444443 126999999999886543 22678899999999999998888889999999999999999987 5567
Q ss_pred hhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceE
Q 047486 489 WLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI 568 (776)
Q Consensus 489 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 568 (776)
.+..+++|++|++++|++.+.+|... +..+++|+.|++++|.++
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~L~~L~Ls~N~l~----------------------------------- 412 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKSLLSLNMSSNILT----------------------------------- 412 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTTCCEEECCSSCCC-----------------------------------
T ss_pred HHhhCCCCCEEECCCCcCCcccccch-hccCccCCEEECcCCCCC-----------------------------------
Confidence 78888888888888887776444321 133445555555555554
Q ss_pred EEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCC
Q 047486 569 TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 648 (776)
Q Consensus 569 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 648 (776)
+.+|..+. ++|+.|++++|+++ .+|..+..+++|++|+|++|+++. +
T Consensus 413 -----------------------------~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l 459 (520)
T 2z7x_B 413 -----------------------------DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V 459 (520)
T ss_dssp -----------------------------GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred -----------------------------cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-c
Confidence 44443332 45666666666665 455555566666666666666653 3
Q ss_pred ch-hhccccccccccCccCcceec
Q 047486 649 PE-QLLSVTALALLNLSYNRLWGR 671 (776)
Q Consensus 649 p~-~l~~l~~L~~L~ls~N~l~g~ 671 (776)
|. .+..+++|++|++++|++++.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHHHhccCCcccEEECcCCCCccc
Confidence 33 355566666666666666554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-44 Score=401.13 Aligned_cols=454 Identities=19% Similarity=0.177 Sum_probs=303.0
Q ss_pred EEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEE
Q 047486 61 DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEI 140 (776)
Q Consensus 61 ~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 140 (776)
+|++++|.++ .+|..+. ++|++|++++| .+.+..|.. +..+++|++|++++|++++..|..|+++++|++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSD-----ILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHH-----HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhh-----ccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 3444444444 3443333 44444444444 443332222 3333334555555555544444455555555555
Q ss_pred EccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCC--cEEEccCCc
Q 047486 141 AFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL--QDVRLEENE 217 (776)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L--~~L~L~~n~ 217 (776)
++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.
T Consensus 75 ~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 75 DLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp ECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred ecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 55555554 23333 44555555555555543 234455555555555555555443 112222444 555555555
Q ss_pred C--CCCCCccccCCC-CCCEEECCCCcCccccCccccCCCCCCCEEeccCCC----CCccccccccccccCCCCccEEec
Q 047486 218 I--RGTIPNSTFQLV-NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS----LLSFTSSANISIKYSLPSLKVLRF 290 (776)
Q Consensus 218 i--~~~~~~~~~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~~~~~l~~L~~L~l 290 (776)
+ .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|. ...+.+.. +.+..+++|+.|++
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL--AKLQTNPKLSNLTL 227 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH--HGGGGCTTCCEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch--hhhccccchhhccc
Confidence 5 445555555444 233556677776666666667777777777777764 22222222 23446777777877
Q ss_pred cCCCCCC-----cchhhhCCcccceEecccCccccccCCCcc----cCCccCCeEeCcCcccccccccc---c---cccC
Q 047486 291 AYCNITE-----FPGFLRNSEELYLLDLSNNRIQGRISKSDS----PGWKSLIDLDLSNNFMTHIELHP---W---MNIT 355 (776)
Q Consensus 291 ~~n~l~~-----lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~---~---~~L~ 355 (776)
++|.++. ++..+ ..++|+.|++++|.+.|.+|...+ ..++.|+.+++++|.+ .++... + .+++
T Consensus 228 ~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCcee
Confidence 7776642 22222 246899999999999888887764 6788899999999888 444211 1 4689
Q ss_pred EEeccCcccCCCCC-CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc--cCCchhhhcCCCccEEECCCC
Q 047486 356 TLDLRNNRIQGSIL-VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG--TIPPCLGNFSTELITLHLKNN 432 (776)
Q Consensus 356 ~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n 432 (776)
.|++++|.+.+... ..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+. +|++|++++|
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N 384 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQN 384 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSS
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCC
Confidence 99999999877653 678999999999999999899999999999999999999985 4556677765 8999999999
Q ss_pred cCCccCc-ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCC
Q 047486 433 SLEGHIH-DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLC 511 (776)
Q Consensus 433 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 511 (776)
.+++.+| ..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence 9998444 4688999999999999999988776654 79999999999998 677777799999999999999985 44
Q ss_pred CCCCCcCCCCccEEeCCCCcCCCCCCc
Q 047486 512 NSNITFPFQALRIIDLSHNEFTGFLPR 538 (776)
Q Consensus 512 ~~~~~~~l~~L~~LdLs~n~l~~~~p~ 538 (776)
.. .+..+++|+.|++++|++++..+.
T Consensus 461 ~~-~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 461 DG-IFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TT-TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HH-HhccCCcccEEECcCCCCcccCCc
Confidence 43 346789999999999999876553
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-42 Score=399.12 Aligned_cols=551 Identities=18% Similarity=0.173 Sum_probs=393.7
Q ss_pred CCCCCCCCC---CCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccC
Q 047486 73 FPDDIFRLP---NLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG 149 (776)
Q Consensus 73 ~~~~l~~l~---~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 149 (776)
+|.....|. .-++.+.++- +++ .+|..+. .. +++|||++|+|++..+.+|.++++|++|+|++|.+++
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~-~l~-~vP~~lp-~~------~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~ 90 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMEL-NFY-KIPDNLP-FS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 90 (635)
T ss_dssp -----CCSEEEETTTEEECTTS-CCS-SCCSSSC-TT------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCCCccccCCCCEEECCCC-CcC-ccCCCCC-cC------CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC
Confidence 454444442 2345666665 555 4665432 23 8999999999998878899999999999999999998
Q ss_pred CCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC-CCCCCCCCcEEEccCCcCCC-CCCcccc
Q 047486 150 QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID-LFQLPNSLQDVRLEENEIRG-TIPNSTF 227 (776)
Q Consensus 150 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~n~i~~-~~~~~~~ 227 (776)
..|++|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+ .+..+++|++|++++|.+++ ..|..+.
T Consensus 91 i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 170 (635)
T 4g8a_A 91 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 170 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc
Confidence 888899999999999999999997777889999999999999999988655 35666899999999999875 3577888
Q ss_pred CCCCCCEEECCCCcCccccCccccCCCCCC----CEEeccCCCCCccccccccccccCCCCccEEeccCCCCC--Ccchh
Q 047486 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKL----QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT--EFPGF 301 (776)
Q Consensus 228 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L----~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~ 301 (776)
.+++|++|++++|+++ .++...+..++++ ..++++.|.+..++... .....++.+++.+|... ..+..
T Consensus 171 ~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-----~~~~~~~~l~l~~n~~~~~~~~~~ 244 (635)
T 4g8a_A 171 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLHKLTLRNNFDSLNVMKTC 244 (635)
T ss_dssp GCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-----TTTCEEEEEEEESCCSSHHHHHHH
T ss_pred cchhhhhhcccCcccc-ccccccccchhhhhhhhhhhhcccCcccccCccc-----ccchhhhhhhhhcccccccccchh
Confidence 8999999999999998 4444555554443 46788888876655432 23345667777776543 22345
Q ss_pred hhCCcccceEecccCccccc--c---CCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCc
Q 047486 302 LRNSEELYLLDLSNNRIQGR--I---SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTK 376 (776)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~~--~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 376 (776)
+..+..++...+..+..... + ....+.....+....+..+....... . ....+.....++
T Consensus 245 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~-~~~~~~~~~~l~ 309 (635)
T 4g8a_A 245 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD--------------G-IIDLFNCLTNVS 309 (635)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE--------------E-CTTTTGGGTTCS
T ss_pred hcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--------------c-hhhhhhhhcccc
Confidence 56666666555543332211 0 01111122222222222111110000 0 001122345667
Q ss_pred EEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCC
Q 047486 377 VLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456 (776)
Q Consensus 377 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 456 (776)
.+.+.++.+.... .+.....++.|++++|.+.+ ++.. .. ..|+.+++.+|.+.... .+..+++|+.|++++|
T Consensus 310 ~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~--~l-~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n 381 (635)
T 4g8a_A 310 SFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQ-FPTL--KL-KSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRN 381 (635)
T ss_dssp EEEEESCEEEECG--GGGSCCCCSEEEEESCEESS-CCCC--BC-TTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSS
T ss_pred ccccccccccccc--ccccchhhhhhhcccccccC-cCcc--cc-hhhhhcccccccCCCCc--ccccccccccchhhcc
Confidence 7777777765432 35566788999999988873 3322 22 36888888888776443 3456889999999999
Q ss_pred cCcC--CCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCC
Q 047486 457 KLEG--PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG 534 (776)
Q Consensus 457 ~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~ 534 (776)
.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++..|......+.. .+..+++++.+++++|.+.+
T Consensus 382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 382 GLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp CCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccc-cccccccccccccccccccc
Confidence 8863 456677788999999999988765 4456788999999999988877655433 34678899999999999986
Q ss_pred CCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc-ccchhhhccCCCCCEE
Q 047486 535 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH-GEIPEVLGNFKSLKVL 613 (776)
Q Consensus 535 ~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L 613 (776)
..|.. +.. ++.++.|++++|.+. +..|..|..+++|++|
T Consensus 460 ~~~~~-~~~---------------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 460 AFNGI-FNG---------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp CCTTT-TTT---------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccc-ccc---------------------------------------chhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 55432 221 567899999999854 4678889999999999
Q ss_pred eCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCC
Q 047486 614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC 693 (776)
Q Consensus 614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~ 693 (776)
+|++|++++.+|.+|+++++|++|+|++|+|++..|..|..+++|++||+++|+|++..|...+ .+. .......+.
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~--~~L~~L~L~ 575 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFP--SSLAFLNLT 575 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCC--TTCCEEECT
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhh--CcCCEEEee
Confidence 9999999999999999999999999999999999999999999999999999999988775422 221 223445788
Q ss_pred CCCCCCCCCCCCCC
Q 047486 694 GEPLTVRCSNDGLP 707 (776)
Q Consensus 694 g~pl~~~C~~~~~~ 707 (776)
+|||.|+|...|..
T Consensus 576 ~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 576 QNDFACTCEHQSFL 589 (635)
T ss_dssp TCCBCCSGGGHHHH
T ss_pred CCCCcccCCcHHHH
Confidence 99999999865543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-43 Score=410.07 Aligned_cols=429 Identities=20% Similarity=0.235 Sum_probs=258.5
Q ss_pred CCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeC-CCccCCCCChhh--------------------------------
Q 047486 5 SKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHL-GATNMSLIKPFS-------------------------------- 51 (776)
Q Consensus 5 ~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~-------------------------------- 51 (776)
.+++.|+|+++.+. +.+|+.++++++|++|+| ++|.+.|..|..
T Consensus 323 ~~V~~L~Ls~~~L~---G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 323 GRVTGLSLAGFGAK---GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp SCEEEEECTTTCCE---EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEECccCCCC---CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 46788888888887 788888888888888888 777654442211
Q ss_pred --------Hh-----------hccCCccEEEcC--CCCCCccCCCCCCCCCCCCEEeccCCCCccc--------------
Q 047486 52 --------LL-----------NLSSTMTDLDLG--GTRIKGNFPDDIFRLPNLQILFLNLNSQLTG-------------- 96 (776)
Q Consensus 52 --------~~-----------~l~~~L~~L~Ls--~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-------------- 96 (776)
+. .. ..++.+.+. .|.+++ +|..++++++|++|+|++| .+++
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~ 476 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDY 476 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHH
T ss_pred hhHHHHHHhhhCccccccccccc-cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-cCCCCccccccccccccc
Confidence 00 00 122222232 256665 7777777788888888877 7776
Q ss_pred ---cCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCc-ccC-CCchhhcCCC-------CCCEE
Q 047486 97 ---YLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTG-QLPHHVSGLS-------YLTTF 164 (776)
Q Consensus 97 ---~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L 164 (776)
.+|..+. |.++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+++++ +|++|
T Consensus 477 ~~g~iP~~l~---f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 477 AKQYENEELS---WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHHHTTSCCC---GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred ccccCChhhh---hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 2665532 2255567777777777777777777777777777777776 776 6676655544 77777
Q ss_pred EccCCcCCCCCCc--cccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCC-CCEEECCCCc
Q 047486 165 DLSGNYFQGGVPS--WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN-LTILDLSSNN 241 (776)
Q Consensus 165 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~ 241 (776)
++++|.++ .+|. .++++++|++|++++|.+. .+|.+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 77777777 6666 7777777777777777776 4445555577777777777777 66777777777 7777777777
Q ss_pred CccccCccccCCCC--CCCEEeccCCCCCccccccc-cccccCCCCccEEeccCCCCCCcchhh-hCCcccceEecccCc
Q 047486 242 LSGAIRFDQFSKLK--KLQFLDLSNNSLLSFTSSAN-ISIKYSLPSLKVLRFAYCNITEFPGFL-RNSEELYLLDLSNNR 317 (776)
Q Consensus 242 l~~~i~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~lp~~l-~~~~~L~~L~L~~n~ 317 (776)
+. .+| ..+..++ +|+.|++++|.+........ ......+++|+.|++++|.++.+|..+ ..+++|+.|++++|.
T Consensus 631 L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 631 LK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 76 555 4444443 37777777777543221110 000113346666666666666666433 356666666666666
Q ss_pred cccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCcccc--C
Q 047486 318 IQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC--S 395 (776)
Q Consensus 318 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~ 395 (776)
++ .+|...+..... ....+++|+.|++++|++. .+|..+. .
T Consensus 709 L~-~ip~~~~~~~~~-----------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 709 MT-SIPENSLKPKDG-----------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CS-CCCTTSSSCTTS-----------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CC-ccChHHhccccc-----------------------------------cccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 65 454443221110 0001224455555555555 4555555 6
Q ss_pred CCCCCEEEccCCcCcccCCchhhhcCCCccEEECCC------CcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486 396 LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN------NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469 (776)
Q Consensus 396 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 469 (776)
+++|+.|+|++|++++ +|..+..+. +|+.|++++ |.+.+.+|..|..+++|+.|+|++|++ +.+|..+.
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-- 826 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-- 826 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence 7777777777777764 666666554 577777765 444444555555555555555555555 33443332
Q ss_pred CCCcEEEcCCCccCcccchh
Q 047486 470 IKLEVVNVGKNMISDSFPCW 489 (776)
Q Consensus 470 ~~L~~L~L~~n~l~~~~~~~ 489 (776)
++|+.|+|++|++....+..
T Consensus 827 ~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp SSSCEEECCSCTTCEEECGG
T ss_pred CCCCEEECCCCCCCccChHH
Confidence 34555555555544433333
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-41 Score=383.57 Aligned_cols=455 Identities=22% Similarity=0.197 Sum_probs=300.9
Q ss_pred CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486 35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114 (776)
Q Consensus 35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~ 114 (776)
++++++++.+++. |..+ +++|++|++++|.+++..|.++.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~i-p~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N----------------------- 86 (562)
T 3a79_B 34 SMVDYSNRNLTHV-PKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN----------------------- 86 (562)
T ss_dssp CEEECTTSCCCSC-CTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-----------------------
T ss_pred cEEEcCCCCCccC-CCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-----------------------
Confidence 4555555555542 3222 145555555555555444445555555555555555
Q ss_pred EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCC
Q 047486 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKN 193 (776)
Q Consensus 115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n 193 (776)
.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|
T Consensus 87 -------~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 87 -------RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp -------CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred -------CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 444444444444444444444444444 23332 44445555555554443 12344455555555555555
Q ss_pred cCCCcCCCCCCCCCC--cEEEccCCcC--CCCCCccccCCC--CCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486 194 MLNGPIDLFQLPNSL--QDVRLEENEI--RGTIPNSTFQLV--NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267 (776)
Q Consensus 194 ~l~~~~~~~~~~~~L--~~L~L~~n~i--~~~~~~~~~~l~--~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i 267 (776)
.+.+. .+..+++| ++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|..
T Consensus 157 ~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 157 KFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp BCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred ccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 44431 11111333 5666666655 555666665543 23 5577777777767767777888888888888752
Q ss_pred C--ccccccccccccCCCCccEEeccCCCCC-----CcchhhhCCcccceEecccCccccccCCCcc----cCCccCCeE
Q 047486 268 L--SFTSSANISIKYSLPSLKVLRFAYCNIT-----EFPGFLRNSEELYLLDLSNNRIQGRISKSDS----PGWKSLIDL 336 (776)
Q Consensus 268 ~--~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L 336 (776)
. .+++.. ..+..+++|+.+++.++.+. .++..+ ..++|++|++++|.++|.+|...+ ..++.|+.+
T Consensus 234 ~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 234 NCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp THHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred ccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 1 122111 23346778888888777654 233333 345899999999999988888764 445555555
Q ss_pred eCcCccccccccc------cccccCEEeccCcccCCCCC-CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcC
Q 047486 337 DLSNNFMTHIELH------PWMNITTLDLRNNRIQGSIL-VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409 (776)
Q Consensus 337 ~l~~n~l~~~~~~------~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 409 (776)
++..+.+ .++.. ...++++|++++|.+..... ..+++|++|++++|.+.+..|..+..+++|++|++++|++
T Consensus 311 ~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 311 HVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp EEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred hccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 5555555 22211 12469999999999876554 6789999999999999999999999999999999999999
Q ss_pred cc--cCCchhhhcCCCccEEECCCCcCCc-cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCccc
Q 047486 410 SG--TIPPCLGNFSTELITLHLKNNSLEG-HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF 486 (776)
Q Consensus 410 ~~--~~p~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 486 (776)
++ .+|..+..+. +|++|++++|.+++ ..+..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+
T Consensus 390 ~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 390 KNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp CBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred CCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 84 2234556665 89999999999998 5555689999999999999999887766554 79999999999998 56
Q ss_pred chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcc
Q 047486 487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRR 539 (776)
Q Consensus 487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~ 539 (776)
|..+..+++|++|++++|++++ +|.. .+..+++|+.|++++|++.+..|..
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchH
Confidence 6666699999999999999995 4444 3467899999999999999766543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-41 Score=383.47 Aligned_cols=457 Identities=18% Similarity=0.170 Sum_probs=249.2
Q ss_pred cEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 047486 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN 193 (776)
Q Consensus 114 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 193 (776)
+++|++++++++ +|..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 445555555552 443332 45555555555555444455555555555555555555554555555555555555555
Q ss_pred cCCCcCCCCCCCCCCcEEEccCCcCCC-CCCccccCCCCCCEEECCCCcCccccCccccCCCCCC--CEEeccCCCC--C
Q 047486 194 MLNGPIDLFQLPNSLQDVRLEENEIRG-TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL--QFLDLSNNSL--L 268 (776)
Q Consensus 194 ~l~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L--~~L~Ls~n~i--~ 268 (776)
.++..... .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+ . .+..+++| ++|++++|.+ .
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeeccccccc
Confidence 55432222 23556666666666654 235667777777777777777653 2 23334444 7777777664 2
Q ss_pred ccccccccccccCCC-CccEEeccCCCCCC-cc-hhhhCCcccceEecccCcc-----ccccCCCcccCCccCCeEeCcC
Q 047486 269 SFTSSANISIKYSLP-SLKVLRFAYCNITE-FP-GFLRNSEELYLLDLSNNRI-----QGRISKSDSPGWKSLIDLDLSN 340 (776)
Q Consensus 269 ~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~-lp-~~l~~~~~L~~L~L~~n~l-----~~~~~~~~~~~l~~L~~L~l~~ 340 (776)
...... +..+. ..-.+++++|.+.. ++ ..+..+++|+.+++++|.. .+.++ .+..++.++.+++.+
T Consensus 185 ~~~~~~----l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 185 GGETES----LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSSCCE----EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEEEE
T ss_pred ccCccc----ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEecC
Confidence 211110 01110 01133444444331 22 2344555666666665531 11111 113344444444444
Q ss_pred ccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccc-----cCCCCCCEEEccCCcCcccCCc
Q 047486 341 NFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-----CSLSSLQYLSLSDNNLSGTIPP 415 (776)
Q Consensus 341 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~p~ 415 (776)
+.+++....... .....++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+|.
T Consensus 259 ~~l~~~~~~~~~---------------~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~ 321 (562)
T 3a79_B 259 IETTWKCSVKLF---------------QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK 321 (562)
T ss_dssp EEECHHHHHHHH---------------HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH
T ss_pred CcCcHHHHHHHH---------------HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh
Confidence 433321110000 00012356677777777776677665 5566666666666666 4552
Q ss_pred -hhhhc--CCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcc--cchhh
Q 047486 416 -CLGNF--STELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDS--FPCWL 490 (776)
Q Consensus 416 -~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~ 490 (776)
.+... ..+|++|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++. .|..+
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 22222 125888888888775332 125677788888888888777777777777888888887777763 34556
Q ss_pred cCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEE
Q 047486 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV 570 (776)
Q Consensus 491 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 570 (776)
..+++|++|++++|++.+.+|... +..++
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~-------------------------------------------------- 428 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRT-CAWAE-------------------------------------------------- 428 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCC-CCCCT--------------------------------------------------
T ss_pred cCCCCCCEEECCCCcCCCccChhh-hcCcc--------------------------------------------------
Confidence 666666666666666655333321 12233
Q ss_pred EeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch
Q 047486 571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 650 (776)
Q Consensus 571 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 650 (776)
.|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|++|||++|++++ +|.
T Consensus 429 --------------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~ 490 (562)
T 3a79_B 429 --------------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPD 490 (562)
T ss_dssp --------------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCT
T ss_pred --------------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCH
Confidence 445555555555555444433 56777777777776 566655677777777777777773 444
Q ss_pred h-hccccccccccCccCcceecCC
Q 047486 651 Q-LLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 651 ~-l~~l~~L~~L~ls~N~l~g~iP 673 (776)
. +..+++|+.|++++|++.+..|
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCCHH
T ss_pred HHHhcCCCCCEEEecCCCcCCCcc
Confidence 3 6777777777777777766544
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-38 Score=348.90 Aligned_cols=408 Identities=24% Similarity=0.256 Sum_probs=176.0
Q ss_pred CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCC-------------CEEeccCCCCcccc
Q 047486 31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL-------------QILFLNLNSQLTGY 97 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L-------------~~L~Ls~n~~~~~~ 97 (776)
.++|++|++++|.+ +.+|..++++ ++|++|++++|.+.|.+|..++++++| ++|++++| .+++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~- 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSS- 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSC-
T ss_pred cccchhhhcccCch-hhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-cccc-
Confidence 35555556655555 4455555555 556666666555555555555555543 55666655 4443
Q ss_pred CCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCc
Q 047486 98 LPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177 (776)
Q Consensus 98 ~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 177 (776)
+|... ++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+++ +|
T Consensus 86 lp~~~--------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 86 LPELP--------PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp CCSCC--------TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-
T ss_pred CCCCc--------CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-
Confidence 22210 125666666666654 4432 2556666666665553 2211 1456666666666653 44
Q ss_pred cccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCC
Q 047486 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL 257 (776)
Q Consensus 178 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L 257 (776)
.++++++|++|++++|.+++.... ..+|++|++++|.+++ +| .+..+++|++|++++|.+.+ ++. ..++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L 217 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSL 217 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTC
T ss_pred ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcc
Confidence 356666666666666665542221 1456666666666654 33 45566666666666666552 331 11356
Q ss_pred CEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEe
Q 047486 258 QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLD 337 (776)
Q Consensus 258 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 337 (776)
++|++++|.++.++. +..+++|++|++++|.++.+|.. .++|+.|++++|.+++ +|.. .++|++|+
T Consensus 218 ~~L~l~~n~l~~lp~------~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ 283 (454)
T 1jl5_A 218 ESIVAGNNILEELPE------LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFLD 283 (454)
T ss_dssp CEEECCSSCCSSCCC------CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEEE
T ss_pred cEEECcCCcCCcccc------cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc----cCcCCEEE
Confidence 666666665543331 23455666666666665555542 2456666666666553 3322 24566666
Q ss_pred CcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchh
Q 047486 338 LSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL 417 (776)
Q Consensus 338 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 417 (776)
+++|.+++++.. .++|+.|++++|++++ ++..+++|++|++++|++.+ +|.. +++|++|++++|+++ .+|.
T Consensus 284 ls~N~l~~l~~~-~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 284 VSENIFSGLSEL-PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp CCSSCCSEESCC-CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred CcCCccCcccCc-CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--
Confidence 666665554321 2455566666665554 12223456666666666654 3332 356666666666665 4554
Q ss_pred hhcCCCccEEECCCCcCCc--cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCc--ccchhhcCC
Q 047486 418 GNFSTELITLHLKNNSLEG--HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD--SFPCWLGSL 493 (776)
Q Consensus 418 ~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l 493 (776)
..++|++|++++|.+++ .+|..+.. | +.|.+.+.+|.. +++|+.|++++|++++ .+|.
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~----- 416 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE----- 416 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC--------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---cCcCCEEECCCCcCCccccchh-----
Confidence 12356666666666665 33433321 1 234444444432 3678888888888876 4443
Q ss_pred CCcCEEEccCCcccccCCC
Q 047486 494 HELKILVLRSNRFYGPLCN 512 (776)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~ 512 (776)
+++.|.+.+|.+.+..+.
T Consensus 417 -sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 417 -SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -------------------
T ss_pred -hHhheeCcCcccCCcccc
Confidence 355566777777665443
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.6e-38 Score=343.86 Aligned_cols=416 Identities=19% Similarity=0.238 Sum_probs=182.8
Q ss_pred hhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCC-CCcc-------cCCCCcEEEccC
Q 047486 49 PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWS-SPLR-------ELDLLSVLDIGF 120 (776)
Q Consensus 49 ~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~-~~l~-------~L~~L~~L~Ls~ 120 (776)
|+.+. . ++|++|++++|.+ +.+|++++++++|++|++++| .+.|.+|..++. ..+. ....+++|++++
T Consensus 5 p~~~~-~-~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 5 PRNVS-N-TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp --------------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred ccccc-c-ccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 44443 4 7899999999999 799999999999999999999 899999988554 2100 001247777777
Q ss_pred CcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC
Q 047486 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID 200 (776)
Q Consensus 121 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 200 (776)
|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +
T Consensus 81 ~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p 147 (454)
T 1jl5_A 81 LGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P 147 (454)
T ss_dssp SCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C
T ss_pred Ccccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c
Confidence 77764 3331 2567777777777765 4532 3567777777776663 2221 15667777777766653 3
Q ss_pred CCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccccccccccc
Q 047486 201 LFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280 (776)
Q Consensus 201 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 280 (776)
.+..+++|++|++++|.+++ +|..+ ++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++..
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~~------- 213 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPDL------- 213 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCCC-------
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCCC-------
Confidence 44444666666666666663 44332 366666666666663 33 366666666666666665543321
Q ss_pred CCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEecc
Q 047486 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLR 360 (776)
Q Consensus 281 ~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 360 (776)
.++|++|++++|.++.+|. +..+++|+.|++++|++++ +|.. .++|++|++++|.+++++. .+++|+.|+++
T Consensus 214 -~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls 285 (454)
T 1jl5_A 214 -PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTDLPE-LPQSLTFLDVS 285 (454)
T ss_dssp -CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSCCCC-CCTTCCEEECC
T ss_pred -cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccccCc-ccCcCCEEECc
Confidence 2466666666666666653 5566666666666666652 3321 2455666666665555432 23455555555
Q ss_pred CcccCCCCCCCCCCCcEEEccCCcCccCCCccccCC-CCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCc
Q 047486 361 NNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSL-SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH 439 (776)
Q Consensus 361 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~ 439 (776)
+|++++. +..+++|+.|++++|.+.+. ..+ ++|++|++++|++++ +|..+ ++|++|++++|.++++ |
T Consensus 286 ~N~l~~l-~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~~----~~L~~L~L~~N~l~~l-p 353 (454)
T 1jl5_A 286 ENIFSGL-SELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPALP----PRLERLIASFNHLAEV-P 353 (454)
T ss_dssp SSCCSEE-SCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSCC-C
T ss_pred CCccCcc-cCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-ccccC----CcCCEEECCCCccccc-c
Confidence 5555441 11124455555555544431 111 244555555554442 33321 2444555554444432 2
Q ss_pred ccccCCCCccEEEcCCCcCcC--CCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccc--cCCCCCC
Q 047486 440 DTFANASHLRSLDLNSNKLEG--PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNI 515 (776)
Q Consensus 440 ~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~ 515 (776)
. .+++|++|++++|++++ .+|.++.. | +.|.+.+.+|.. +++|++|++++|++.+ .+|
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP---- 415 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP---- 415 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC------------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---cCcCCEEECCCCcCCccccch----
Confidence 2 23444444444444444 23332221 1 123333333321 2556666666666654 222
Q ss_pred CcCCCCccEEeCCCCcCCCCCC
Q 047486 516 TFPFQALRIIDLSHNEFTGFLP 537 (776)
Q Consensus 516 ~~~l~~L~~LdLs~n~l~~~~p 537 (776)
++++.|++.+|.+.+.+|
T Consensus 416 ----~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ----------------------
T ss_pred ----hhHhheeCcCcccCCccc
Confidence 224555555555554433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-37 Score=341.41 Aligned_cols=370 Identities=22% Similarity=0.210 Sum_probs=217.9
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCc
Q 047486 206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL 285 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L 285 (776)
++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.++.+... .+..+++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCcccC
Confidence 45555555555555555556666666666666666665555555566666666666666665433221 23345555
Q ss_pred cEEeccCCCCCC-cch--hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCc
Q 047486 286 KVLRFAYCNITE-FPG--FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNN 362 (776)
Q Consensus 286 ~~L~l~~n~l~~-lp~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 362 (776)
++|++++|.++. +|. .+..+++|++|++++|.+.+..|...+..+++|++|++++|.+++..+..+..+.
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~------- 178 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ------- 178 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-------
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-------
Confidence 555555555543 222 2556666666666666666544544445666666666666665555443332110
Q ss_pred ccCCCCCCCCCCCcEEEccCCcCccCCCcc--------ccCCCCCCEEEccCCcCcccCCchhhhcC--CCccEEECCCC
Q 047486 363 RIQGSILVPPPSTKVLLVSNNKLSGKIPPS--------ICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNN 432 (776)
Q Consensus 363 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n 432 (776)
...++.+++++|.+.+..+.. +..+++|++|++++|.+.+..|..+.... .+|+.|++++|
T Consensus 179 ---------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 179 ---------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp ---------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ---------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 012344444444444332222 22445677777777776665655554431 25666666666
Q ss_pred cCCccCcccccCCCCccEEEcCCCcCcCCCChhhhc--CCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccC
Q 047486 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK--CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510 (776)
Q Consensus 433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 510 (776)
.+.+... ..+.+.+..+..+.. .++|+.|++++|++++..|.++..+++|++|++++|++.+..
T Consensus 250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 5443211 111222222222222 245666666666666666666665555555555555554433
Q ss_pred CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEe
Q 047486 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD 590 (776)
Q Consensus 511 ~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 590 (776)
+..+ .. ++.|+.|+
T Consensus 316 ~~~~--~~----------------------------------------------------------------l~~L~~L~ 329 (455)
T 3v47_A 316 DNAF--WG----------------------------------------------------------------LTHLLKLN 329 (455)
T ss_dssp TTTT--TT----------------------------------------------------------------CTTCCEEE
T ss_pred hhHh--cC----------------------------------------------------------------cccCCEEE
Confidence 2221 11 34556666
Q ss_pred cCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 591 FSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 591 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
+++|.+++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++++
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 77777766677778888889999999998888888888888899999999999887777778888889999999999888
Q ss_pred cCCCC
Q 047486 671 RIPRG 675 (776)
Q Consensus 671 ~iP~~ 675 (776)
.+|.-
T Consensus 410 ~~~~~ 414 (455)
T 3v47_A 410 SCPRI 414 (455)
T ss_dssp CTTTT
T ss_pred CCCcc
Confidence 87753
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.7e-38 Score=344.12 Aligned_cols=371 Identities=20% Similarity=0.182 Sum_probs=242.4
Q ss_pred CccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccC
Q 047486 70 KGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG 149 (776)
Q Consensus 70 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 149 (776)
.+..+..++++++|++|++++| .+.+ +| . +..+++|++|++++|.+++. | ++.+++|++|++++|.+++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~-~-----l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNS-SITD-MT-G-----IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSS-CCCC-CT-T-----GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred CcccccChhHcCCCCEEEccCC-Cccc-Ch-h-----hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce
Confidence 3334445666777777777777 6664 24 2 55566677777777777753 3 6777777777777777775
Q ss_pred CCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCC
Q 047486 150 QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229 (776)
Q Consensus 150 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 229 (776)
. + ++++++|++|++++|.+++ +| ++.+++|++|++++|.+++. + +..+++|++|++++|...+.+ .+..+
T Consensus 100 ~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 100 L-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp C-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred e-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccC
Confidence 3 3 6677777777777777764 33 66667777777776666653 2 222355555555555333333 24445
Q ss_pred CCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccc
Q 047486 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELY 309 (776)
Q Consensus 230 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~ 309 (776)
++|++|++++|++++ ++ +..+++|++|++++|. ++.++ +..+++|+
T Consensus 170 ~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~----------------------------l~~~~--l~~l~~L~ 215 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNN----------------------------ITKLD--LNQNIQLT 215 (457)
T ss_dssp TTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSC----------------------------CSCCC--CTTCTTCS
T ss_pred CcCCEEECCCCccce-ec---cccCCCCCEEECcCCc----------------------------CCeec--cccCCCCC
Confidence 555555555555542 22 4444455555555554 44442 44555666
Q ss_pred eEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCC
Q 047486 310 LLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKI 389 (776)
Q Consensus 310 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (776)
.|++++|++++ +| +..+++|++|++++|.+++++...+++|+.|+++.|. |+.+++++|.+.+.+
T Consensus 216 ~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~-----------L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-----------LLEIDLTHNTQLIYF 280 (457)
T ss_dssp EEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC-----------CSCCCCTTCTTCCEE
T ss_pred EEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC-----------CCEEECCCCccCCcc
Confidence 66666666654 33 2455666666666666666665566666666666553 456777788777666
Q ss_pred CccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469 (776)
Q Consensus 390 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 469 (776)
| +..+++|+.|++++|...+.+|.. . .+|+.|++++| ++|++|++++|++++. + +..+
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l 338 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQ---A-AGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHN 338 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECT---T-CCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTC
T ss_pred c--ccccccCCEEECCCCcccceeccC---C-CcceEechhhc-------------ccCCEEECCCCccccc-c--cccC
Confidence 6 467889999999999887777742 2 25666655544 6899999999999985 3 8889
Q ss_pred CCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM 547 (776)
Q Consensus 470 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l 547 (776)
++|+.|++++|++++ ++.|..|.+++|.+.|. ..+..|+.+++++|+++|.+|..++.....+
T Consensus 339 ~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~ 401 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401 (457)
T ss_dssp TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred CcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCce
Confidence 999999999999886 35677778889988875 2355688899999999999998876554444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.6e-37 Score=338.07 Aligned_cols=370 Identities=21% Similarity=0.205 Sum_probs=178.5
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCC-chhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQL-PHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 555555555555555555555666666666665554332 3455566666666666666655555556666666666666
Q ss_pred CCcCCCcC-C--CCCCCCCCcEEEccCCcCCCCCCcc-ccCCCCCCEEECCCCcCccccCccccCCC--CCCCEEeccCC
Q 047486 192 KNMLNGPI-D--LFQLPNSLQDVRLEENEIRGTIPNS-TFQLVNLTILDLSSNNLSGAIRFDQFSKL--KKLQFLDLSNN 265 (776)
Q Consensus 192 ~n~l~~~~-~--~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~Ls~n 265 (776)
+|.+++.. + .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+ ..+..+ .+|+.|++++|
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTC
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccC
Confidence 66555411 1 1333355555566666655554544 5566666666666666653322 333333 45555555555
Q ss_pred CCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCccc--CCccCCeEeCcCccc
Q 047486 266 SLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP--GWKSLIDLDLSNNFM 343 (776)
Q Consensus 266 ~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l 343 (776)
.+..++....... ....+..+++|+.|++++|.+.+..+..+.. ..++|+.|++++|..
T Consensus 191 ~l~~~~~~~~~~~-------------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 191 TLQDMNEYWLGWE-------------------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp BCTTCSTTCTTHH-------------------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred cccccchhhcccc-------------------ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 5443332210000 0001123344555555555544433332211 113344444444432
Q ss_pred cccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCcccc--CCCCCCEEEccCCcCcccCCchhhhcC
Q 047486 344 THIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC--SLSSLQYLSLSDNNLSGTIPPCLGNFS 421 (776)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 421 (776)
...... . +.+....+..+. ..++|++|++++|.+.+..|..+..+.
T Consensus 252 ~~~~~~-----------~---------------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 252 MGSSFG-----------H---------------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp TSCCTT-----------C---------------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred cccccc-----------h---------------------hhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 221110 0 000000111111 123444555555554444444443333
Q ss_pred CCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEc
Q 047486 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL 501 (776)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 501 (776)
+|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++..|.++..+++|++|++
T Consensus 300 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 300 -DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 4555555555555544555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCC
Q 047486 502 RSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP 537 (776)
Q Consensus 502 ~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p 537 (776)
++|++.+..+.. +..+++|+.|++++|++++..|
T Consensus 379 ~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 379 DTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCCHhH--hccCCcccEEEccCCCcccCCC
Confidence 555555432222 2345566666666666666555
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-35 Score=324.80 Aligned_cols=363 Identities=17% Similarity=0.180 Sum_probs=278.4
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCC
Q 047486 218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297 (776)
Q Consensus 218 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 297 (776)
..+..+..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++ +..+++|++|++++|.++.
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSC
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCce
Confidence 344555678889999999999999984 44 5889999999999999977653 4478999999999999988
Q ss_pred cchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCC-CCCCCCCc
Q 047486 298 FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI-LVPPPSTK 376 (776)
Q Consensus 298 lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~ 376 (776)
+| +..+++|++|++++|++++ ++ +..+++|++|++++|.+++++...+++|++|++++|...+.+ ...+++|+
T Consensus 100 ~~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 173 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT 173 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred ee--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCC
Confidence 86 7889999999999999885 44 478899999999999998887777788888888888544443 34577788
Q ss_pred EEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCC
Q 047486 377 VLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456 (776)
Q Consensus 377 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 456 (776)
.|++++|++++ +| +..+++|++|++++|++++ ++ +..+. +|++|++++|+++++ | +..+++|+.|++++|
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~-~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-LD--LNQNI-QLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCe-ec--cccCC-CCCEEECcCCccccc-C--ccccCCCCEEEeeCC
Confidence 88888888776 33 6777788888888887774 32 44444 688888888887763 3 677777888888888
Q ss_pred cCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCC
Q 047486 457 KLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFL 536 (776)
Q Consensus 457 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~ 536 (776)
++++.. +..+++|+.|+++.| +|+.|++++|++.+.+|. ..+++|+.|++++|...+.+
T Consensus 244 ~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 244 PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEE
T ss_pred cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCccccee
Confidence 877653 345666777776654 455677778877776653 45788899999999888777
Q ss_pred CcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCC
Q 047486 537 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLS 616 (776)
Q Consensus 537 p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 616 (776)
|.. ...++.++.. .++.|+.|++++|++++. + ++.+++|+.|+++
T Consensus 303 ~~~----~~~L~~L~l~----------------------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 303 DCQ----AAGITELDLS----------------------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV 347 (457)
T ss_dssp ECT----TCCCSCCCCT----------------------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred ccC----CCcceEechh----------------------------hcccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence 642 2233333221 146889999999999984 3 8999999999999
Q ss_pred CCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCC
Q 047486 617 HNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675 (776)
Q Consensus 617 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 675 (776)
+|++++ ++.|+.|++++|.++|. ..+..|..+++++|+++|.||..
T Consensus 348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999986 24677778999999986 35677899999999999999975
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=325.86 Aligned_cols=323 Identities=21% Similarity=0.225 Sum_probs=246.0
Q ss_pred EEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCC
Q 047486 287 VLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQG 366 (776)
Q Consensus 287 ~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 366 (776)
.++.+++.++.+|..+ .++++.|++++|.+++ ++...|..+++|++|++++|.++.+.+..+.
T Consensus 15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-------------- 77 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN-------------- 77 (477)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------------
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhh--------------
Confidence 4444455555555432 2355666666666653 3223335555666665555555554333221
Q ss_pred CCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCC
Q 047486 367 SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAS 446 (776)
Q Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 446 (776)
.+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|.+++
T Consensus 78 ----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 78 ----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp ----TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCT
T ss_pred ----CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCC
Confidence 234456666666666655556677888888888888888866666666665 788888888888888888888899
Q ss_pred CccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEe
Q 047486 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIID 526 (776)
Q Consensus 447 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~Ld 526 (776)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++.+.++... ....+|+.|+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ 230 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLS 230 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEE
Confidence 99999999999988777788899999999999999988888888899999999999988877776654 3345899999
Q ss_pred CCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhcc
Q 047486 527 LSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGN 606 (776)
Q Consensus 527 Ls~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~ 606 (776)
+++|.++ .+|...+.. ++.|+.|+|++|.+++..+..|..
T Consensus 231 l~~n~l~-~~~~~~~~~---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 231 ITHCNLT-AVPYLAVRH---------------------------------------LVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp EESSCCC-SCCHHHHTT---------------------------------------CTTCCEEECCSSCCCEECTTSCTT
T ss_pred CcCCccc-ccCHHHhcC---------------------------------------ccccCeeECCCCcCCccChhhccc
Confidence 9999988 455433322 567899999999999888888999
Q ss_pred CCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486 607 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 607 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 673 (776)
+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999999999999999999999999999999999999998888888999999999999999986533
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-34 Score=314.55 Aligned_cols=349 Identities=24% Similarity=0.308 Sum_probs=265.4
Q ss_pred CCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcc
Q 047486 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEE 307 (776)
Q Consensus 228 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~ 307 (776)
.+++++.|+++++.+. .++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh------hhccccCCEEECCCCccccChh-hcCCCC
Confidence 3568888888888887 454 37778888888888888766543 4467888888888888887776 778888
Q ss_pred cceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCcc
Q 047486 308 LYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG 387 (776)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 387 (776)
|++|++++|.+++. +. +..+++|++|++++|.++.++. ...+++|+.|+++ +.+.+
T Consensus 114 L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~--------------------~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 114 LTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISA--------------------LSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGG--------------------GTTCTTCSEEEEE-ESCCC
T ss_pred CCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCChh--------------------hccCCcccEeecC-CcccC
Confidence 88888888887743 32 4677778777777777665432 1223455555554 33332
Q ss_pred CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhh
Q 047486 388 KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA 467 (776)
Q Consensus 388 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 467 (776)
. ..+..+++|++|++++|.+. .++ .+..+. +|++|++++|.+++..+ +..+++|++|++++|++++. ..+.
T Consensus 170 ~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 170 L--KPLANLTTLERLDISSNKVS-DIS-VLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred c--hhhccCCCCCEEECcCCcCC-CCh-hhccCC-CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 2 23777888888888888876 343 355554 78888888888887655 66788888888888888764 4677
Q ss_pred cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486 468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM 547 (776)
Q Consensus 468 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l 547 (776)
.+++|+.|++++|++++..+ +..+++|++|++++|++.+..+ ...+++|+.|++++|++++..| +.
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~~----- 306 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP---IS----- 306 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG---GG-----
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchh---hc-----
Confidence 88888888888888887655 7888888899998888877544 3567889999999998875322 11
Q ss_pred hhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcc
Q 047486 548 KNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 627 (776)
Q Consensus 548 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 627 (776)
.++.|+.|++++|++++..| ++.+++|+.|++++|++++. ..
T Consensus 307 ----------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 307 ----------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ----------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ----------------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 15678999999999998766 78999999999999999875 47
Q ss_pred ccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486 628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674 (776)
Q Consensus 628 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 674 (776)
+.++++|+.|++++|++++..| +..+++|+.|++++|++++ +|.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 8899999999999999998877 8899999999999999987 354
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-33 Score=312.68 Aligned_cols=345 Identities=28% Similarity=0.371 Sum_probs=277.1
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCc
Q 047486 206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL 285 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L 285 (776)
++++.|++.++.+.. +| .+..+++|++|++++|.+. .++. +..+++|++|++++|.+..++. +..+++|
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP------LANLTNL 114 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG------GTTCTTC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh------hcCCCCC
Confidence 789999999999974 55 4788999999999999998 4442 8999999999999999776653 4589999
Q ss_pred cEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccC
Q 047486 286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ 365 (776)
Q Consensus 286 ~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 365 (776)
++|++++|.++.++. +..+++|++|++++|.+.+ ++. +..+++|++|++++ .+.....
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~~~----------------- 172 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDLKP----------------- 172 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCCGG-----------------
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCchh-----------------
Confidence 999999999998876 8899999999999999884 442 47889999998863 3333221
Q ss_pred CCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCC
Q 047486 366 GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 445 (776)
Q Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 445 (776)
...+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..| +..+. +|++|++++|.+++. ..+..+
T Consensus 173 ---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 173 ---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp ---GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGGGC
T ss_pred ---hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhhcC
Confidence 12234556666666665543 347778888899998888875444 44444 789999999888764 467788
Q ss_pred CCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEE
Q 047486 446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII 525 (776)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 525 (776)
++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++.+..+ ...+++|+.|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L 314 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYL 314 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEE
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEE
Confidence 899999999999887655 7888999999999999887655 7888999999999998887544 3568899999
Q ss_pred eCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhc
Q 047486 526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG 605 (776)
Q Consensus 526 dLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 605 (776)
++++|++++..|. . .++.|+.|++++|.+++. ..+.
T Consensus 315 ~L~~n~l~~~~~~---~---------------------------------------~l~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 315 TLYFNNISDISPV---S---------------------------------------SLTKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp ECCSSCCSCCGGG---G---------------------------------------GCTTCCEEECCSSCCCCC--GGGT
T ss_pred ECcCCcCCCchhh---c---------------------------------------cCccCCEeECCCCccCCc--hhhc
Confidence 9999998865441 1 157789999999999976 4789
Q ss_pred cCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCC
Q 047486 606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647 (776)
Q Consensus 606 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 647 (776)
.+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999999999999998877 89999999999999999964
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=311.66 Aligned_cols=322 Identities=20% Similarity=0.198 Sum_probs=265.5
Q ss_pred eEeCcCccccccccccccccCEEeccCcccCCCC---CCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc
Q 047486 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411 (776)
Q Consensus 335 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 411 (776)
.++.+++.++.++.....+++.|++++|.+++.. +..+++|++|++++|.+.+..|..|.++++|++|++++|++.
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~- 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-
Confidence 3444444444444433445555555555555432 334678899999999999888999999999999999999998
Q ss_pred cCCch-hhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhh
Q 047486 412 TIPPC-LGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490 (776)
Q Consensus 412 ~~p~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 490 (776)
.+|.. +..+. +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+
T Consensus 94 ~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred ccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 55554 45554 89999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred cCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEE
Q 047486 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV 570 (776)
Q Consensus 491 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 570 (776)
..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|...+.+|...+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------- 222 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLY---------------------------- 222 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTT----------------------------
T ss_pred cccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccccc----------------------------
Confidence 999999999999999988655443 67899999999999988777655432
Q ss_pred EeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch
Q 047486 571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 650 (776)
Q Consensus 571 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 650 (776)
...|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|.
T Consensus 223 ------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 223 ------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp ------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 23689999999999977778899999999999999999998889999999999999999999999999
Q ss_pred hhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 047486 651 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDG 705 (776)
Q Consensus 651 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~~ 705 (776)
.|..+++|++|++++|++++..|. .|..........+.+||+.|+|...|
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEES-----VFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGG-----GBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred HhcCcccCCEEECCCCcCceeCHh-----HcCCCcccCEEEccCCCccCccchHh
Confidence 999999999999999999864332 23333334455678889998887543
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-34 Score=295.40 Aligned_cols=260 Identities=31% Similarity=0.521 Sum_probs=184.2
Q ss_pred CCCcEEEccCCcCcc--CCCccccCCCCCCEEEccC-CcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCcc
Q 047486 373 PSTKVLLVSNNKLSG--KIPPSICSLSSLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 449 (776)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+. +|++|++++|.+++.+|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666666 5666666666666666663 666656666555554 566666666666655565666666666
Q ss_pred EEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCC
Q 047486 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529 (776)
Q Consensus 450 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~ 529 (776)
+|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +.|+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------------------------~~L~~L~L~~ 183 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-------------------------KLFTSMTISR 183 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-------------------------TTCCEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-------------------------hcCcEEECcC
Confidence 666666666655555566666666666666666555555555544 1455555555
Q ss_pred CcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCC
Q 047486 530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKS 609 (776)
Q Consensus 530 n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 609 (776)
|.+++.+|..+ . .+. |+.|++++|.+++.+|..|+.+++
T Consensus 184 N~l~~~~~~~~-~---------------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 184 NRLTGKIPPTF-A---------------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp SEEEEECCGGG-G---------------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred CeeeccCChHH-h---------------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 55554444332 1 022 678888888888888888999999
Q ss_pred CCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccc
Q 047486 610 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGN 689 (776)
Q Consensus 610 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n 689 (776)
|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+|
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence 99999999999877665 78889999999999999989999999999999999999999999998877888888888899
Q ss_pred cCCCCCCCCCCC
Q 047486 690 IHLCGEPLTVRC 701 (776)
Q Consensus 690 ~~l~g~pl~~~C 701 (776)
+.+||.|+. .|
T Consensus 302 ~~lc~~p~~-~C 312 (313)
T 1ogq_A 302 KCLCGSPLP-AC 312 (313)
T ss_dssp SEEESTTSS-CC
T ss_pred CCccCCCCC-CC
Confidence 999998876 46
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-31 Score=286.94 Aligned_cols=309 Identities=20% Similarity=0.261 Sum_probs=151.6
Q ss_pred CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccC
Q 047486 31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLREL 110 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L 110 (776)
++++++|+++++.+....+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++| .+.+..|.. +.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQNV 116 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TTTC
T ss_pred cCCceEEEecCCchhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHH-----hcCC
Confidence 3455555555555544433334445 55555555555555444445555555555555555 444433333 3333
Q ss_pred CCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 047486 111 DLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDL 190 (776)
Q Consensus 111 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 190 (776)
++|++|++++|.++...+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++. .+..+++|++|++
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 3355555555555533233345555555555555555544444555555555555555555432 1334455555555
Q ss_pred cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486 191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF 270 (776)
Q Consensus 191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~ 270 (776)
++|.+.+.. .+++|++|++++|.+... |.. ..++|++|++++|.+.+. ..+..+++|++|++++|.++.+
T Consensus 194 ~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE
T ss_pred ccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCc
Confidence 555444311 114455555555555422 211 124555555555555422 3445555555555555554433
Q ss_pred ccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccccc
Q 047486 271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP 350 (776)
Q Consensus 271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 350 (776)
.. ..+..+++|++|++++|.++.+|..+..+++|+.|++++|++. .+|... ..+++|++|++++|.++.++...
T Consensus 264 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~ 337 (390)
T 3o6n_A 264 MY----HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLKLST 337 (390)
T ss_dssp ES----GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCCCCT
T ss_pred Ch----hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-cccCcCCEEECCCCccceeCchh
Confidence 21 1123445555555555555555544444555555555555554 333332 44455555555555555555555
Q ss_pred ccccCEEeccCcccC
Q 047486 351 WMNITTLDLRNNRIQ 365 (776)
Q Consensus 351 ~~~L~~L~l~~n~l~ 365 (776)
+++|+.|++++|++.
T Consensus 338 ~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCCSEEECCSSCEE
T ss_pred hccCCEEEcCCCCcc
Confidence 555566666665554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=287.71 Aligned_cols=311 Identities=22% Similarity=0.259 Sum_probs=226.0
Q ss_pred CCCCCEEeCCCCCCccccCChh-HhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCC
Q 047486 4 LSKLTHLDLSFCVLTIEQRTFD-LLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPN 82 (776)
Q Consensus 4 l~~L~~L~Ls~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~ 82 (776)
++++++|+++++.+. .+| ..+.++++|++|++++|.+.+..+..+..+ ++|++|+|++|.+.+..|..+.++++
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 467788888887763 334 346778888888888888877766677777 78888888888887766777788888
Q ss_pred CCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCC
Q 047486 83 LQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT 162 (776)
Q Consensus 83 L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 162 (776)
|++|++++| .+.. +|..+ +.++++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+
T Consensus 119 L~~L~L~~n-~l~~-l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 119 LTVLVLERN-DLSS-LPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp CCEEECCSS-CCCC-CCTTT----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred CCEEECCCC-ccCc-CCHHH----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence 888888888 6663 44332 34555588888888888877777788888888888888887754 256677888
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcC
Q 047486 163 TFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNL 242 (776)
Q Consensus 163 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 242 (776)
+|++++|.+++ +...++|++|++++|.+...... ..++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 190 ~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 190 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp EEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred eeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 88888887763 33445788888888877654322 236788888888888743 5677788888888888888
Q ss_pred ccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCcccccc
Q 047486 243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRI 322 (776)
Q Consensus 243 ~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~ 322 (776)
.+..+ ..+..+++|++|++++|+++.++.. ...+++|++|++++|.++.+|..+..+++|+.|++++|.+++ +
T Consensus 261 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~ 333 (390)
T 3o6n_A 261 EKIMY-HPFVKMQRLERLYISNNRLVALNLY-----GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-L 333 (390)
T ss_dssp CEEES-GGGTTCSSCCEEECCSSCCCEEECS-----SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-C
T ss_pred CCcCh-hHccccccCCEEECCCCcCcccCcc-----cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-e
Confidence 74433 6777888888888888887665432 245778888888888888787777777888888888888763 3
Q ss_pred CCCcccCCccCCeEeCcCccccccc
Q 047486 323 SKSDSPGWKSLIDLDLSNNFMTHIE 347 (776)
Q Consensus 323 ~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (776)
+ +..+++|+.|++++|.++...
T Consensus 334 ~---~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 334 K---LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp C---CCTTCCCSEEECCSSCEEHHH
T ss_pred C---chhhccCCEEEcCCCCccchh
Confidence 3 356678888888888776543
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.5e-31 Score=278.42 Aligned_cols=306 Identities=23% Similarity=0.290 Sum_probs=179.7
Q ss_pred CCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCc
Q 047486 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK 331 (776)
Q Consensus 252 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 331 (776)
..+++|++|+++++.+..+++ +..+++|++|++++|.++.++. +..+++|++|++++|.+++ ++ .+..++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~------~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~--~~~~l~ 110 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG------IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-IS--ALQNLT 110 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred hhcccccEEEEeCCccccchh------hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-ch--HHcCCC
Confidence 345556666666665544432 2245555555555555555544 4555555555555555542 22 123344
Q ss_pred cCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc
Q 047486 332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411 (776)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 411 (776)
+|++|++++ |.+.+. +. +..+++|++|++++|....
T Consensus 111 ~L~~L~l~~------------------------------------------n~i~~~-~~-~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 111 NLRELYLNE------------------------------------------DNISDI-SP-LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp TCSEEECTT------------------------------------------SCCCCC-GG-GTTCTTCCEEECTTCTTCC
T ss_pred cCCEEECcC------------------------------------------CcccCc-hh-hccCCceeEEECCCCCCcc
Confidence 444444433 333322 11 4455555555555554432
Q ss_pred cCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc
Q 047486 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491 (776)
Q Consensus 412 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 491 (776)
.++ .+..+. +|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +.
T Consensus 147 ~~~-~~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 218 (347)
T 4fmz_A 147 DLS-PLSNMT-GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218 (347)
T ss_dssp CCG-GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG
T ss_pred ccc-chhhCC-CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hh
Confidence 322 233333 46666666655554433 5556666666666666654332 5566666666666666655443 55
Q ss_pred CCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEE
Q 047486 492 SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVA 571 (776)
Q Consensus 492 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 571 (776)
.+++|++|++++|++.+..+ ...+++|+.|++++|.+++. +. +.
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~--~~----------------------------- 262 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-NA--VK----------------------------- 262 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-GG--GT-----------------------------
T ss_pred cCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-hh--Hh-----------------------------
Confidence 66666666666666654333 24566677777777766531 10 11
Q ss_pred eccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchh
Q 047486 572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 651 (776)
Q Consensus 572 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 651 (776)
.++.|+.|++++|.+++. +.+..+++|+.|++++|.+++..|..|+++++|++|++++|++++..|
T Consensus 263 ----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 263 ----------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp ----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred ----------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 145677888888888764 457888888888888888888888888888888888888888887666
Q ss_pred hccccccccccCccCcce
Q 047486 652 LLSVTALALLNLSYNRLW 669 (776)
Q Consensus 652 l~~l~~L~~L~ls~N~l~ 669 (776)
+..+++|++|++++|+++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 778888888888888874
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=3e-32 Score=283.66 Aligned_cols=250 Identities=25% Similarity=0.443 Sum_probs=218.9
Q ss_pred cccCEEeccCcccCC--CCCC---CCCCCcEEEccC-CcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCcc
Q 047486 352 MNITTLDLRNNRIQG--SILV---PPPSTKVLLVSN-NKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI 425 (776)
Q Consensus 352 ~~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~ 425 (776)
..++.|++++|.+.+ .+|. .+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+. +|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCC
Confidence 578999999999998 6654 378999999995 999999999999999999999999999989999988876 899
Q ss_pred EEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCC-CCcEEEcCCCccCcccchhhcCCCCcCEEEccCC
Q 047486 426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCI-KLEVVNVGKNMISDSFPCWLGSLHELKILVLRSN 504 (776)
Q Consensus 426 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 504 (776)
+|++++|.+++.+|..|..+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999999999999999999999999999999999999998 999999999999999999888876 777777777
Q ss_pred cccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhc
Q 047486 505 RFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV 584 (776)
Q Consensus 505 ~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (776)
++.+..+... .. ++
T Consensus 208 ~l~~~~~~~~--~~----------------------------------------------------------------l~ 221 (313)
T 1ogq_A 208 MLEGDASVLF--GS----------------------------------------------------------------DK 221 (313)
T ss_dssp EEEECCGGGC--CT----------------------------------------------------------------TS
T ss_pred cccCcCCHHH--hc----------------------------------------------------------------CC
Confidence 7765433322 22 34
Q ss_pred ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 664 (776)
Q Consensus 585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 664 (776)
.|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..|..+++|++|+|++|+++|.+|.. ..+++|+.++++
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 556666666666655554 778899999999999999999999999999999999999999999987 889999999999
Q ss_pred cCc-ceec
Q 047486 665 YNR-LWGR 671 (776)
Q Consensus 665 ~N~-l~g~ 671 (776)
+|+ ++|.
T Consensus 300 ~N~~lc~~ 307 (313)
T 1ogq_A 300 NNKCLCGS 307 (313)
T ss_dssp SSSEEEST
T ss_pred CCCCccCC
Confidence 998 7764
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.8e-30 Score=275.56 Aligned_cols=302 Identities=22% Similarity=0.320 Sum_probs=134.3
Q ss_pred CCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCC
Q 047486 4 LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL 83 (776)
Q Consensus 4 l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L 83 (776)
+++|++|+++++.+. .++ .+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+++ + ..+.++++|
T Consensus 43 l~~L~~L~l~~~~i~----~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 43 LESITKLVVAGEKVA----SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HTTCSEEECCSSCCC----CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cccccEEEEeCCccc----cch-hhhhcCCccEEEccCCccccchh--hhcC-CcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 344555555555442 222 24445555555555555544422 4444 555555555555442 2 234455555
Q ss_pred CEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCE
Q 047486 84 QILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTT 163 (776)
Q Consensus 84 ~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 163 (776)
++|++++| .+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 113 ~~L~l~~n-~i~~~-~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 113 RELYLNED-NISDI-SP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp SEEECTTS-CCCCC-GG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CEEECcCC-cccCc-hh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 55555555 33321 11 3333335555555553332222 24555555555555555443222 445555555
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486 164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243 (776)
Q Consensus 164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 243 (776)
|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.
T Consensus 182 L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 182 LSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp EECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEccCCcccc-ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 5555555442 222 4445555555555554444332 2222445555555554442221 444455555555555444
Q ss_pred cccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc-hhhhCCcccceEecccCcccccc
Q 047486 244 GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRI 322 (776)
Q Consensus 244 ~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~ 322 (776)
+ + ..+..+++|++|++++|.++.++ .+..+++|++|++++|.++..+ ..+..+++|+.|++++|.+++..
T Consensus 257 ~-~--~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 257 D-I--NAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp C-C--GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred C-C--hhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 2 2 23444445555555555443331 1223444444444444444322 33444444444444444444322
Q ss_pred CCCcccCCccCCeEeCcCccc
Q 047486 323 SKSDSPGWKSLIDLDLSNNFM 343 (776)
Q Consensus 323 ~~~~~~~l~~L~~L~l~~n~l 343 (776)
| +..+++|++|++++|.+
T Consensus 328 ~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 328 P---LASLSKMDSADFANQVI 345 (347)
T ss_dssp G---GGGCTTCSEESSSCC--
T ss_pred C---hhhhhccceeehhhhcc
Confidence 2 23344444444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=9.1e-31 Score=297.88 Aligned_cols=310 Identities=20% Similarity=0.259 Sum_probs=189.3
Q ss_pred CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccC
Q 047486 31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLREL 110 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L 110 (776)
+.+++.++++++.+....+..+..+ ++|++|+|++|.+.+..|..|+.+++|++|+|++| .+.+..|.. +..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH-----HcCC
Confidence 4566666666666666555555666 66666666666666555566666666666666666 565544443 3444
Q ss_pred CCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 047486 111 DLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDL 190 (776)
Q Consensus 111 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 190 (776)
++|++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++.. ++.+++|++|++
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 44666666666666444444566666666666666666666666666666666666666666432 344566666666
Q ss_pred cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486 191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF 270 (776)
Q Consensus 191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~ 270 (776)
++|.+.+.. .+++|+.|++++|.+....+ .+ .++|+.|++++|.+++. ..+..+++|++|++++|.+..+
T Consensus 200 ~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 200 SYNLLSTLA----IPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CSSCCSEEE----CCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE
T ss_pred ccCcccccc----CCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCC
Confidence 666655421 22556666666666653222 11 24666666666666532 4566666666666666665443
Q ss_pred ccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccccc
Q 047486 271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP 350 (776)
Q Consensus 271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 350 (776)
... .+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. .+|..+ ..+++|++|++++|.++.++...
T Consensus 270 ~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~~N~l~~~~~~~ 343 (597)
T 3oja_B 270 MYH----PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLKLST 343 (597)
T ss_dssp ESG----GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCCCCT
T ss_pred CHH----HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECCCCCCCCcChhh
Confidence 221 234566666666666666666655556666677777766666 444443 55666777777777766666666
Q ss_pred ccccCEEeccCcccCC
Q 047486 351 WMNITTLDLRNNRIQG 366 (776)
Q Consensus 351 ~~~L~~L~l~~n~l~~ 366 (776)
+++|+.|++++|.+.+
T Consensus 344 ~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp TCCCSEEECCSSCEEH
T ss_pred cCCCCEEEeeCCCCCC
Confidence 6677777777776653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.5e-31 Score=297.71 Aligned_cols=308 Identities=21% Similarity=0.233 Sum_probs=144.8
Q ss_pred CCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCC
Q 047486 5 SKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQ 84 (776)
Q Consensus 5 ~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~ 84 (776)
++++.++++++.+. ...+..+.++++|++|+|++|.+.+..|..+..+ ++|++|+|++|.+.+..|..|+++++|+
T Consensus 51 ~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 44455555555442 1112234445555555555555555444445555 5555555555555544444445555555
Q ss_pred EEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEE
Q 047486 85 ILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTF 164 (776)
Q Consensus 85 ~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 164 (776)
+|+|++| .+.+..+.. +..+++|++|++++|.+++..|..|+.+++|++|++++|.+++. .++.+++|++|
T Consensus 127 ~L~L~~n-~l~~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L 197 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 197 (597)
T ss_dssp EEECCSS-CCCCCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEE
T ss_pred EEEeeCC-CCCCCCHHH-----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhh
Confidence 5555555 444222211 23333355555555555544444555555555555555555432 13344455555
Q ss_pred EccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCcc
Q 047486 165 DLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG 244 (776)
Q Consensus 165 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 244 (776)
++++|.+++ +...++|++|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|++|++++|.+.+
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred hcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 555554442 223334555555555544322211 1345555555555543 2444455555555555555543
Q ss_pred ccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCC
Q 047486 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISK 324 (776)
Q Consensus 245 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~ 324 (776)
..+ ..|..+++|++|++++|.++.++.. ...+++|++|++++|.++.+|..+..+++|+.|++++|.+.+ ++
T Consensus 269 ~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~- 340 (597)
T 3oja_B 269 IMY-HPFVKMQRLERLYISNNRLVALNLY-----GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK- 340 (597)
T ss_dssp EES-GGGTTCSSCCEEECTTSCCCEEECS-----SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC-
T ss_pred CCH-HHhcCccCCCEEECCCCCCCCCCcc-----cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC-cC-
Confidence 322 4445555555555555554433221 123455555555555555555444455555555555555442 22
Q ss_pred CcccCCccCCeEeCcCcccc
Q 047486 325 SDSPGWKSLIDLDLSNNFMT 344 (776)
Q Consensus 325 ~~~~~l~~L~~L~l~~n~l~ 344 (776)
+..+++|+.|++++|.+.
T Consensus 341 --~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp --CCTTCCCSEEECCSSCEE
T ss_pred --hhhcCCCCEEEeeCCCCC
Confidence 133445555555555444
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=265.58 Aligned_cols=285 Identities=22% Similarity=0.279 Sum_probs=208.3
Q ss_pred cCCeEeCcCccccccccccccccCEEeccCcccCCCC---CCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 047486 332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN 408 (776)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 408 (776)
.++.++++++.++.++....++++.|++++|.+.+.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 3455555555555544444445555555555554432 2346778888888888888888888888999999999998
Q ss_pred CcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcC--CCChhhhcCCCCcEEEcCCCccCccc
Q 047486 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG--PLPRSLAKCIKLEVVNVGKNMISDSF 486 (776)
Q Consensus 409 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~ 486 (776)
+. .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.++. ..+..+..+ +|++|++++|++++ +
T Consensus 114 l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 114 LV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I 187 (332)
T ss_dssp CC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred CC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence 87 6776654 478999999998888777788888899999999988863 667777777 88888888888876 3
Q ss_pred chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486 487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566 (776)
Q Consensus 487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 566 (776)
|..+. ++|++|++++|.+.+..+... ..+++|+.|++++|.+++..|.. +.
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~-~~------------------------ 238 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGS-LS------------------------ 238 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTG-GG------------------------
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhH-hh------------------------
Confidence 43332 688888888888877655443 56788888888888887644322 11
Q ss_pred eEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccccc------CCCcEEecc
Q 047486 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM------TALESLDLS 640 (776)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls 640 (776)
.++.|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|... ..|+.|+++
T Consensus 239 ---------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 239 ---------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp ---------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred ---------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence 1467788888888888 677778888888888888888887766666553 568888888
Q ss_pred CccCc--CCCchhhccccccccccCccCc
Q 047486 641 FNKLD--GRIPEQLLSVTALALLNLSYNR 667 (776)
Q Consensus 641 ~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 667 (776)
+|.+. +..|.+|..++.|+.+++++|+
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccCcccccccchhhhhhccccc
Confidence 88887 6777788888888888888774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.9e-29 Score=261.58 Aligned_cols=286 Identities=20% Similarity=0.223 Sum_probs=172.9
Q ss_pred cCCeEeCcCccccccccccccccCEEeccCcccCCCCC---CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 047486 332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSIL---VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN 408 (776)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 408 (776)
+++.++++++.++.++....+.++.|++++|.+++..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 44555555555555444334455555555555544322 235666777777777776667777777777777777777
Q ss_pred CcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcC--CCChhhhcCCCCcEEEcCCCccCccc
Q 047486 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG--PLPRSLAKCIKLEVVNVGKNMISDSF 486 (776)
Q Consensus 409 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~ 486 (776)
++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.++. ..+..+..+++|++|++++|.++..
T Consensus 112 l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l- 186 (330)
T 1xku_A 112 LK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI- 186 (330)
T ss_dssp CS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred CC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-
Confidence 76 5665543 367777777777777666677777777777777777753 5566677777777777777776643
Q ss_pred chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486 487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566 (776)
Q Consensus 487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 566 (776)
|..+. ++|++|++++|++.+..+... ..+++|+.|++++|.+++..+.. +.
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------ 237 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGS-LA------------------------ 237 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTT-GG------------------------
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhh-cc------------------------
Confidence 33222 566777777776665444332 45566666666666665433211 11
Q ss_pred eEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccc------cCCCcEEecc
Q 047486 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN------MTALESLDLS 640 (776)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls 640 (776)
.++.|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|.. .+.|+.|+++
T Consensus 238 ---------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 238 ---------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp ---------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred ---------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence 1345666666666666 55666666666666666666666555555533 2556666666
Q ss_pred CccCcC--CCchhhccccccccccCccCc
Q 047486 641 FNKLDG--RIPEQLLSVTALALLNLSYNR 667 (776)
Q Consensus 641 ~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 667 (776)
+|.+.. ..|..|..+..++.+++++|+
T Consensus 302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCcccccccCccccccccceeEEEecccC
Confidence 666642 445566666666666666663
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.3e-29 Score=261.53 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=77.4
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 192 (776)
+++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.++.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 666777777666 4555443 5677777777777766666777777777777777777766677777777777777777
Q ss_pred CcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486 193 NMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243 (776)
Q Consensus 193 n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 243 (776)
|.+....+... ++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 76653222111 44555555555554333344555555555555555553
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.8e-33 Score=305.26 Aligned_cols=291 Identities=21% Similarity=0.191 Sum_probs=186.1
Q ss_pred ccceEecccCcccc----ccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccC
Q 047486 307 ELYLLDLSNNRIQG----RISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSN 382 (776)
Q Consensus 307 ~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 382 (776)
+|++|++++|.+++ .++..+ ..+++|++|++++|.++......+.. ......++|++|++++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCE-------------GLLDPQCRLEKLQLEY 151 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHH-------------HHTSTTCCCCEEECTT
T ss_pred ceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHH-------------HHhcCCCcceEEECCC
Confidence 56777777776653 222222 45566666666666655432211100 0111234566777777
Q ss_pred CcCccCC----CccccCCCCCCEEEccCCcCcccCCchhhh----cCCCccEEECCCCcCCcc----CcccccCCCCccE
Q 047486 383 NKLSGKI----PPSICSLSSLQYLSLSDNNLSGTIPPCLGN----FSTELITLHLKNNSLEGH----IHDTFANASHLRS 450 (776)
Q Consensus 383 n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~----~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 450 (776)
|.+.+.. +..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++. ++..+..+++|++
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 7666533 455666788888888888876543333332 223788888888888764 4666777888888
Q ss_pred EEcCCCcCcCCC-----ChhhhcCCCCcEEEcCCCccCcc----cchhhcCCCCcCEEEccCCcccccCCCCCC---CcC
Q 047486 451 LDLNSNKLEGPL-----PRSLAKCIKLEVVNVGKNMISDS----FPCWLGSLHELKILVLRSNRFYGPLCNSNI---TFP 518 (776)
Q Consensus 451 L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~ 518 (776)
|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|++.+..+.... ...
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 888888877542 22233578888888888888764 566677788888888888887643221110 112
Q ss_pred CCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc
Q 047486 519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG 598 (776)
Q Consensus 519 l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 598 (776)
.++|+.|++++|.+++.....+ ......++.|+.|++++|.+++
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l------------------------------------~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHF------------------------------------SSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHH------------------------------------HHHHHHCSSCCEEECCSSBCHH
T ss_pred CccceeeEcCCCCCchHHHHHH------------------------------------HHHHhhCCCccEEEccCCcccc
Confidence 3578888888888764211110 0111225678888888888877
Q ss_pred cchhhhcc-----CCCCCEEeCCCCcCcc----cCCccccccCCCcEEeccCccCcCC
Q 047486 599 EIPEVLGN-----FKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGR 647 (776)
Q Consensus 599 ~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ 647 (776)
..+..+.. .++|+.|+|++|.+++ .+|..+..+++|++|||++|++++.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 66655543 6788888888888886 6777788888888888888888754
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-28 Score=258.65 Aligned_cols=289 Identities=21% Similarity=0.208 Sum_probs=208.7
Q ss_pred CCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCC
Q 047486 33 KLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112 (776)
Q Consensus 33 ~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~ 112 (776)
+++.++++++.+... |..+ ++++++|++++|.+++..+..+.++++|++|++++| .+.+..|.. +..+++
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGA-----FAPLVK 101 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCTT
T ss_pred CCeEEEecCCCcccc-CccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHH-----hcCCCC
Confidence 677788877777654 4333 367788888888887666667778888888888887 777655655 455555
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC--CCCccccCCCCCCEEEc
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG--GVPSWLFTLPSLLSIDL 190 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l 190 (776)
|++|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+.++++|++|++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 888888888877 4555444 678888888888877767777888888888888887753 56677778888888888
Q ss_pred cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486 191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF 270 (776)
Q Consensus 191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~ 270 (776)
++|.++...... .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|+++.+
T Consensus 179 ~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 179 ADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp CSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred CCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCccC
Confidence 888777543322 277888888888888777788888888888888888887 44446778888888888888887765
Q ss_pred ccccccccccCCCCccEEeccCCCCCCcch-hhh------CCcccceEecccCcccc-ccCCCcccCCccCCeEeCcCcc
Q 047486 271 TSSANISIKYSLPSLKVLRFAYCNITEFPG-FLR------NSEELYLLDLSNNRIQG-RISKSDSPGWKSLIDLDLSNNF 342 (776)
Q Consensus 271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~------~~~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~ 342 (776)
+.. +..+++|++|++++|.++.++. .+. ..+.++.+++++|.+.. .++...|..+..++.+++++|+
T Consensus 256 p~~-----l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGG-----LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTT-----TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred Chh-----hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 543 3467888888888888887763 332 23678888998888753 3444556778888888888874
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.5e-33 Score=306.22 Aligned_cols=392 Identities=18% Similarity=0.159 Sum_probs=193.0
Q ss_pred CCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCC----ChhhHhhccCCccEEEcCCCCCCccCCCCCC-C
Q 047486 5 SKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLI----KPFSLLNLSSTMTDLDLGGTRIKGNFPDDIF-R 79 (776)
Q Consensus 5 ~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~-~ 79 (776)
++|++||++++.+.. ..+...+..+++|++|++++|.+... ++..+..+ ++|++|+|++|.+.+..+..+. .
T Consensus 3 ~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHH
Confidence 456777777777641 12334466677777777777776643 24455555 6677777777666543221111 1
Q ss_pred CC----CCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhh
Q 047486 80 LP----NLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV 155 (776)
Q Consensus 80 l~----~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 155 (776)
++ +|++|++++| .+.+... ..++..+..+++|++|++++|.+++..+..+
T Consensus 80 l~~~~~~L~~L~L~~n-~i~~~~~-------------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNC-CLTGAGC-------------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCSTTCCCCEEECTTS-CCBGGGH-------------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred HhhCCCceeEEEccCC-CCCHHHH-------------------------HHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 11 3455555444 3331100 1234445555555555555555443323222
Q ss_pred c-----CCCCCCEEEccCCcCCCCC----CccccCCCCCCEEEccCCcCCCcCC-CC-----CCCCCCcEEEccCCcCCC
Q 047486 156 S-----GLSYLTTFDLSGNYFQGGV----PSWLFTLPSLLSIDLSKNMLNGPID-LF-----QLPNSLQDVRLEENEIRG 220 (776)
Q Consensus 156 ~-----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~-~~-----~~~~~L~~L~L~~n~i~~ 220 (776)
. ..++|++|++++|.+++.. +..+..+++|++|++++|.+..... .+ ...++|++|++++|.+++
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2 1344555555555555322 3334445555555555555432110 00 011355555555555543
Q ss_pred C----CCccccCCCCCCEEECCCCcCcccc----CccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccC
Q 047486 221 T----IPNSTFQLVNLTILDLSSNNLSGAI----RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292 (776)
Q Consensus 221 ~----~~~~~~~l~~L~~L~Ls~n~l~~~i----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~ 292 (776)
. ++..+..+++|++|++++|.+.+.. ....+..+++|++|++++|.++.....
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------- 274 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG------------------- 274 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-------------------
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-------------------
Confidence 2 3445555666666666666654221 111222344455555555443221111
Q ss_pred CCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCC
Q 047486 293 CNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPP 372 (776)
Q Consensus 293 n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 372 (776)
.++..+..+++|++|++++|.+.+..+..+...+ ....
T Consensus 275 ----~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------------------------------~~~~ 312 (461)
T 1z7x_W 275 ----DLCRVLRAKESLKELSLAGNELGDEGARLLCETL--------------------------------------LEPG 312 (461)
T ss_dssp ----HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------------------------------TSTT
T ss_pred ----HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------------------------------ccCC
Confidence 1455666677778888877776543221110000 0001
Q ss_pred CCCcEEEccCCcCccC----CCccccCCCCCCEEEccCCcCcccCCchhhhc----CCCccEEECCCCcCCc----cCcc
Q 047486 373 PSTKVLLVSNNKLSGK----IPPSICSLSSLQYLSLSDNNLSGTIPPCLGNF----STELITLHLKNNSLEG----HIHD 440 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~----~~~L~~L~L~~n~l~~----~~~~ 440 (776)
++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++ .++.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 2233333333433322 34455566777777777777764434333321 2356777777776664 4555
Q ss_pred cccCCCCccEEEcCCCcCcCCCChhhh-----cCCCCcEEEcCCCccCccc
Q 047486 441 TFANASHLRSLDLNSNKLEGPLPRSLA-----KCIKLEVVNVGKNMISDSF 486 (776)
Q Consensus 441 ~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~ 486 (776)
.+..+++|++|++++|++++.....+. ...+|+.|++.++.+....
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 566666666666666666543222211 1234666666655554433
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.2e-30 Score=296.07 Aligned_cols=430 Identities=14% Similarity=0.072 Sum_probs=260.1
Q ss_pred ChhHhhcCCCCCCEEeCCCccC-----------CCCC----hhhHhhccCCccEEEcCCCCCCccCCCCCCC-CCC-CCE
Q 047486 23 TFDLLASNLTKLSLLHLGATNM-----------SLIK----PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFR-LPN-LQI 85 (776)
Q Consensus 23 ~~~~~l~~l~~L~~L~L~~~~~-----------~~~~----~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~-l~~-L~~ 85 (776)
..+..+.++++|++|+++++.. .+.. +.....+ ++|++|+|++|.+++..+..+.. +++ |++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 3455667888888888876532 1111 1112256 78888888888877665555544 344 888
Q ss_pred EeccCCCCcccc-CCCCCCCCCcccCCCCcEEEccCCccccc----ccccccCCCCCCEEEccCCcccC----CCchhhc
Q 047486 86 LFLNLNSQLTGY-LPKSNWSSPLRELDLLSVLDIGFCNFTGS----IPTSIGNLTRATEIAFASNHFTG----QLPHHVS 156 (776)
Q Consensus 86 L~Ls~n~~~~~~-~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~~~ 156 (776)
|++++|..+... ++.. ...+++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.
T Consensus 143 L~L~~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSI-----VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp EEEESCEEEEHHHHHHH-----HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred EECcCCCCcCHHHHHHH-----HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 888887212211 1110 23566689999998887765 34455678899999999888873 3445567
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCC----cCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCC
Q 047486 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG----PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNL 232 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 232 (776)
++++|++|++++|.+.+ +|..+..+++|++|+++...... .......+++|+.|+++++.. +.+|..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence 88999999999988874 67778888999999998643221 112234558899999988643 3677778889999
Q ss_pred CEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccC-----------CCCCC--cc
Q 047486 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY-----------CNITE--FP 299 (776)
Q Consensus 233 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~--lp 299 (776)
++|++++|.+.+......+..+++|++|+++ +. +...........+++|++|++++ +.++. ++
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~---~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV---IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG---GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc---cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 9999999987644333456889999999998 33 22221111123466777777773 33432 22
Q ss_pred hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEE
Q 047486 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLL 379 (776)
Q Consensus 300 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 379 (776)
.....+++|+.|+++.+.+++..+..+...+++|++|+++.+.
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~------------------------------------- 414 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD------------------------------------- 414 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------------------------------------
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------------------------------------
Confidence 3344566677776666666544333321223444444432110
Q ss_pred ccCCcCccC-----CCccccCCCCCCEEEccCCc--CcccCCchhhhcCCCccEEECCCCcCCcc-CcccccCCCCccEE
Q 047486 380 VSNNKLSGK-----IPPSICSLSSLQYLSLSDNN--LSGTIPPCLGNFSTELITLHLKNNSLEGH-IHDTFANASHLRSL 451 (776)
Q Consensus 380 l~~n~l~~~-----~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 451 (776)
..|.+++. ++..+.++++|++|++++|. +++..+..+....++|++|++++|.+++. ++..+..+++|+.|
T Consensus 415 -~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 -REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp -CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred -CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 02222221 22234557777888776543 55444445555444677777777776642 33444566777777
Q ss_pred EcCCCcCcCC-CChhhhcCCCCcEEEcCCCccCcccchhh-cCCCCcCEEEcc
Q 047486 452 DLNSNKLEGP-LPRSLAKCIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLR 502 (776)
Q Consensus 452 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~ 502 (776)
++++|.+++. ++..+..+++|++|++++|++++.....+ ..++.+....+.
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 7777776543 23334556677777777776665433333 244555444443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=257.03 Aligned_cols=279 Identities=18% Similarity=0.143 Sum_probs=148.0
Q ss_pred CccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcC
Q 047486 330 WKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409 (776)
Q Consensus 330 l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 409 (776)
|+.....+.+++.++.++....+++++|++++|. +.+..+..+.++++|++|++++|.+
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~---------------------i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNR---------------------ITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSC---------------------CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCc---------------------CcccCHHHhccCCCCCEEECCCCcc
Confidence 3444456666666666665444455555555554 4444444555555555555555555
Q ss_pred cccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcCCC-ccCcccc
Q 047486 410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVGKN-MISDSFP 487 (776)
Q Consensus 410 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~ 487 (776)
++..|..+..+. +|++|++++|.+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+
T Consensus 89 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 89 NTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 543344444443 45555555555555444445555555555555555554333 34555555555555555 3444444
Q ss_pred hhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccce
Q 047486 488 CWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 567 (776)
Q Consensus 488 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 567 (776)
..+..+++|++|++++|++.+..+... ..+++|+.|++++|.++ .+|...
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~--------------------------- 217 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIF--------------------------- 217 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHH---------------------------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhh---------------------------
Confidence 555555555555555555555444333 34555566666555553 222111
Q ss_pred EEEEeccchhhHHHhhcceeEEecCCCcccccchhhhc---cCCCCCEEeCCCCcCcc----cCCccccccCCCcEEecc
Q 047486 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG---NFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLS 640 (776)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls 640 (776)
...++.|+.|++++|.+++..+..+. ....++.++|+++.+++ .+|..+.++++|++|||+
T Consensus 218 ------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 218 ------------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp ------------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred ------------hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 11134556666666666554433322 34456666666666654 245556666666666666
Q ss_pred CccCcCCCchh-hccccccccccCccCcceecCC
Q 047486 641 FNKLDGRIPEQ-LLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 641 ~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP 673 (776)
+|+++. +|.. |..+++|++|++++|++.+..|
T Consensus 286 ~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 666663 3333 4666666666666666665444
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.7e-27 Score=244.26 Aligned_cols=275 Identities=21% Similarity=0.218 Sum_probs=173.5
Q ss_pred EEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc--cCCchhhhcCCCccEEECCCCc
Q 047486 356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG--TIPPCLGNFSTELITLHLKNNS 433 (776)
Q Consensus 356 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n~ 433 (776)
.++++++.++......++++++|++++|.+....+..|.++++|++|++++|.+.. ..|..+.... +|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCc
Confidence 34444444443333334566777777777775555567888888888888888762 2255555554 78888888888
Q ss_pred CCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccc-cCC
Q 047486 434 LEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG-PLC 511 (776)
Q Consensus 434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 511 (776)
+++ ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+
T Consensus 90 i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 874 45567788888888888888886655 577888888888888888887777778888888888888887765 333
Q ss_pred CCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEec
Q 047486 512 NSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDF 591 (776)
Q Consensus 512 ~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 591 (776)
... ..+++|+.|++++|.+++..|.. +.. ++.|+.|++
T Consensus 169 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~---------------------------------------l~~L~~L~L 206 (306)
T 2z66_A 169 DIF--TELRNLTFLDLSQCQLEQLSPTA-FNS---------------------------------------LSSLQVLNM 206 (306)
T ss_dssp SCC--TTCTTCCEEECTTSCCCEECTTT-TTT---------------------------------------CTTCCEEEC
T ss_pred hHH--hhCcCCCEEECCCCCcCCcCHHH-hcC---------------------------------------CCCCCEEEC
Confidence 332 45666666666666665433322 111 345566666
Q ss_pred CCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccC-CCcEEeccCccCcCCCc--hhhccccccccccCccCcc
Q 047486 592 SRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT-ALESLDLSFNKLDGRIP--EQLLSVTALALLNLSYNRL 668 (776)
Q Consensus 592 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l 668 (776)
++|.+++..+..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++..+ .....+...+.+.+..+.+
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~ 286 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 286 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC
T ss_pred CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc
Confidence 66666655555566666666666666666666666666653 66666666666654322 1122233344444455555
Q ss_pred eecCCC
Q 047486 669 WGRIPR 674 (776)
Q Consensus 669 ~g~iP~ 674 (776)
.+..|.
T Consensus 287 ~C~~p~ 292 (306)
T 2z66_A 287 ECATPS 292 (306)
T ss_dssp BEEESG
T ss_pred ccCCch
Confidence 544443
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-29 Score=288.61 Aligned_cols=437 Identities=14% Similarity=0.100 Sum_probs=287.9
Q ss_pred CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCC---CccCCCCCC------------CCCCCCEEeccCCCCccccCC
Q 047486 35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRI---KGNFPDDIF------------RLPNLQILFLNLNSQLTGYLP 99 (776)
Q Consensus 35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l---~~~~~~~l~------------~l~~L~~L~Ls~n~~~~~~~p 99 (776)
+.+.+..+. ....+..+..+ ++|++|+|+++.. .+.+|..++ ++++|++|+|++| .+.+..+
T Consensus 53 ~~l~~~~~~-~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~ 129 (592)
T 3ogk_B 53 EHVTMALCY-TATPDRLSRRF-PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL 129 (592)
T ss_dssp CEEEESCGG-GSCHHHHHHHC-TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred cEEEEeecc-ccChHHHHHhC-CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence 345554432 23335556778 8999999988643 133444444 6899999999999 7776544
Q ss_pred CCCCCCCccc-C-CCCcEEEccCCc-ccc-cccccccCCCCCCEEEccCCcccCC----CchhhcCCCCCCEEEccCCcC
Q 047486 100 KSNWSSPLRE-L-DLLSVLDIGFCN-FTG-SIPTSIGNLTRATEIAFASNHFTGQ----LPHHVSGLSYLTTFDLSGNYF 171 (776)
Q Consensus 100 ~~~~~~~l~~-L-~~L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l 171 (776)
.. +.. + .+|++|++++|. ++. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 130 ~~-----l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 130 DR-----LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp HH-----HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred HH-----HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence 43 222 2 239999999987 221 2233345889999999999998766 344567899999999999999
Q ss_pred CC----CCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCC---CCCCccccCCCCCCEEECCCCcCcc
Q 047486 172 QG----GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR---GTIPNSTFQLVNLTILDLSSNNLSG 244 (776)
Q Consensus 172 ~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~ 244 (776)
++ .++..+.++++|++|++++|.+.+....+..+++|++|+++..... ...+..+..+++|+.|+++++...
T Consensus 205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~- 283 (592)
T 3ogk_B 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN- 283 (592)
T ss_dssp SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-
T ss_pred CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-
Confidence 73 3445567899999999999998875555555599999999864332 234567788999999999986443
Q ss_pred ccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC--CcchhhhCCcccceEeccc-------
Q 047486 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT--EFPGFLRNSEELYLLDLSN------- 315 (776)
Q Consensus 245 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~~~~L~~L~L~~------- 315 (776)
.++ ..+..+++|++|++++|.++. .........+++|++|+++ +.+. .++.....+++|++|++++
T Consensus 284 ~l~-~~~~~~~~L~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 284 EMP-ILFPFAAQIRKLDLLYALLET---EDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp TGG-GGGGGGGGCCEEEETTCCCCH---HHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred HHH-HHHhhcCCCcEEecCCCcCCH---HHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 444 567889999999999998432 2111112356666666666 2222 2223334555666666652
Q ss_pred ----CccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCc
Q 047486 316 ----NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPP 391 (776)
Q Consensus 316 ----n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (776)
+.+++......... +++|++|+++.+.+++..+.
T Consensus 359 ~~~~~~~~~~~~~~l~~~------------------------------------------~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQG------------------------------------------CQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp SSTTCCCCHHHHHHHHHH------------------------------------------CTTCSEEEEEESCCCHHHHH
T ss_pred ccccCccCHHHHHHHHhh------------------------------------------CccCeEEEeecCCccHHHHH
Confidence 22221111000111 23445555555555555455
Q ss_pred cccC-CCCCCEEEcc----CCcCccc-----CCchhhhcCCCccEEECCCCc--CCccCccccc-CCCCccEEEcCCCcC
Q 047486 392 SICS-LSSLQYLSLS----DNNLSGT-----IPPCLGNFSTELITLHLKNNS--LEGHIHDTFA-NASHLRSLDLNSNKL 458 (776)
Q Consensus 392 ~~~~-~~~L~~L~Ls----~n~l~~~-----~p~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l 458 (776)
.+.. +++|++|+++ .|.+++. ++..+..+. +|++|++++|. +++.....+. .+++|++|++++|.+
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 5554 7889999996 5667642 333344454 89999997654 6655444443 488999999999998
Q ss_pred cCC-CChhhhcCCCCcEEEcCCCccCccc-chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCC
Q 047486 459 EGP-LPRSLAKCIKLEVVNVGKNMISDSF-PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529 (776)
Q Consensus 459 ~~~-~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~ 529 (776)
++. ++..+..+++|++|++++|.+++.. +.....+++|++|++++|++++...... ...++.+....+..
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYWNIELIPS 547 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTEEEEEECC
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCcEEEEecC
Confidence 863 4556688999999999999987653 4445679999999999999876533222 23456555554443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=252.76 Aligned_cols=230 Identities=23% Similarity=0.227 Sum_probs=134.2
Q ss_pred CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL 451 (776)
Q Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 451 (776)
.++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 34555666666666655566666666666666666666644444444443 56666666666665555556666666666
Q ss_pred EcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCC
Q 047486 452 DLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHN 530 (776)
Q Consensus 452 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n 530 (776)
+|++|+++...+..|..+++|+.|++++| .+....+..|..+++|++|++++|++.+. +. ...
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~---~~~------------ 216 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN---LTP------------ 216 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC---CTT------------
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc---ccc------------
Confidence 66666665555555556666666666553 33333333444555555555555544431 10 122
Q ss_pred cCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCC
Q 047486 531 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL 610 (776)
Q Consensus 531 ~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 610 (776)
++.|+.|+|++|.+++..|..|.++++|
T Consensus 217 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 217 ----------------------------------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp ----------------------------------------------------CTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred ----------------------------------------------------cccccEEECcCCcCcccCcccccCccCC
Confidence 3455666666666666666666666666
Q ss_pred CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++..
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 666666666666666666666666666666666666555666666666666666666543
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-26 Score=254.74 Aligned_cols=255 Identities=20% Similarity=0.219 Sum_probs=206.3
Q ss_pred CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477 (776)
Q Consensus 398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 477 (776)
....++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|+.|+|++|.+++..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3456777777777 6776543 47888888888888888888888888888888888888888888888888888888
Q ss_pred CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557 (776)
Q Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~ 557 (776)
++|++++..+..|..+++|++|++++|++.+..+.. +..+++|+.|++++|+..+.+|...|..
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------- 194 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEG-------------- 194 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhH--HhcCCcccEEeCCCCCCccccChhhccC--------------
Confidence 888888877778888888889998888887644433 3678889999998866555555543332
Q ss_pred cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 637 (776)
++.|+.|++++|++++. | .+..+++|+.|+|++|.+++..|..|.++++|+.|
T Consensus 195 -------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 247 (452)
T 3zyi_A 195 -------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247 (452)
T ss_dssp -------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred -------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence 56789999999999865 3 58899999999999999999999999999999999
Q ss_pred eccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047486 638 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSND 704 (776)
Q Consensus 638 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~ 704 (776)
+|++|++++..|..|..+++|+.|+|++|++++..+.. |..........+.+||+.|+|...
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL-----FTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS-----STTCTTCCEEECCSSCEECSTTTH
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH-----hccccCCCEEEccCCCcCCCCCch
Confidence 99999999999999999999999999999998544322 233333445677888999999754
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-26 Score=240.97 Aligned_cols=248 Identities=23% Similarity=0.319 Sum_probs=173.1
Q ss_pred cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchh-hhcCCCccEEECCCCcCCcc--CcccccCCCCccEEE
Q 047486 376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL-GNFSTELITLHLKNNSLEGH--IHDTFANASHLRSLD 452 (776)
Q Consensus 376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ 452 (776)
+.++.+++.++ .+|..+. ++|++|++++|.+. .+|... ..+ ++|++|++++|.++.. .+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 46777777766 3444332 57788888888877 555543 344 3688888888877633 255666677888888
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccc-hhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCc
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP-CWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~ 531 (776)
+++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+... ..+++|++|++++|.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNS 161 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCc
Confidence 8888777 355567777888888888887776654 567777788888888877776555443 556777777777777
Q ss_pred CCC-CCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCC
Q 047486 532 FTG-FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL 610 (776)
Q Consensus 532 l~~-~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 610 (776)
+++ .+|.. +. .++.|+.|++++|++++..|..+..+++|
T Consensus 162 l~~~~~~~~-~~---------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 162 FQENFLPDI-FT---------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp EGGGEECSC-CT---------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccchhH-Hh---------------------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 764 22322 11 14566777788887777777777777788
Q ss_pred CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccc-ccccccCccCcceec
Q 047486 611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLNLSYNRLWGR 671 (776)
Q Consensus 611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ 671 (776)
+.|+|++|.+++..+..+..+++|++|||++|++++..|..+..++ +|++|++++|++++.
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888887776666777777788888888888777777777773 777788887777654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=253.81 Aligned_cols=250 Identities=17% Similarity=0.218 Sum_probs=215.2
Q ss_pred CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEc
Q 047486 374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453 (776)
Q Consensus 374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 453 (776)
....++.++..+. .+|..+. +.++.|++++|++.+..+..+..+. +|++|++++|.++++.+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3567888888887 5666554 6899999999999866667777665 8999999999999988899999999999999
Q ss_pred CCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533 (776)
Q Consensus 454 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~ 533 (776)
++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|+..+.++.. .+..+++|+.|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc
Confidence 999999888888999999999999999999888888999999999999996655555443 2467899999999999988
Q ss_pred CCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEE
Q 047486 534 GFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVL 613 (776)
Q Consensus 534 ~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 613 (776)
.+|. +. .++.|+.|+|++|++++..|..|..+++|+.|
T Consensus 199 -~~~~--~~---------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 199 -EIPN--LT---------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp -SCCC--CT---------------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred -cccc--cC---------------------------------------CCcccCEEECCCCccCccChhhhccCccCCEE
Confidence 3442 11 15678999999999999989999999999999
Q ss_pred eCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++..
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999999999999999999999999998888889999999999999999865
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=249.94 Aligned_cols=247 Identities=22% Similarity=0.222 Sum_probs=205.3
Q ss_pred EEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCC
Q 047486 356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE 435 (776)
Q Consensus 356 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 435 (776)
.++..+..++.......+.++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+. +|++|++++|.++
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCC
Confidence 444444444433333356777888888888888888899999999999999999855556666665 7999999999999
Q ss_pred ccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcccchhhcCCCCcCEEEccCCcccccCCCCC
Q 047486 436 GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN 514 (776)
Q Consensus 436 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 514 (776)
+..+..|..+++|++|+|++|+++...+..|..+++|++|++++| .+....+..|.++++|++|++++|.+... |.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-- 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PN-- 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CC--
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cc--
Confidence 888888999999999999999999888889999999999999985 55555555789999999999999998853 32
Q ss_pred CCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCC
Q 047486 515 ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRN 594 (776)
Q Consensus 515 ~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 594 (776)
...+++|+.|++++|.+++..|.. |.. ++.|+.|++++|
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~-~~~---------------------------------------l~~L~~L~L~~n 241 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGS-FQG---------------------------------------LMHLQKLWMIQS 241 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTT-TTT---------------------------------------CTTCCEEECTTC
T ss_pred -cCCCcccCEEECCCCccCccChhh-hcc---------------------------------------CccCCEEECCCC
Confidence 367889999999999998655533 222 567899999999
Q ss_pred cccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCC
Q 047486 595 RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647 (776)
Q Consensus 595 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 647 (776)
++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 99999999999999999999999999988888899999999999999999753
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.3e-27 Score=243.57 Aligned_cols=234 Identities=23% Similarity=0.276 Sum_probs=145.2
Q ss_pred CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 452 (776)
+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+. +|++|++++|.++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 34455555555554 34444444555555555555554 4554444443 4555555555554 3344444455555555
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcC
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l 532 (776)
+++|.+.+.+|..+... ..+..+..+++|++|++++|++. .+|.. +..+++|+.|++++|.+
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~--l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPAS--IANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGG--GGGCTTCCEEEEESSCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHh--hcCCCCCCEEEccCCCC
Confidence 55544444444433220 00001123556666666666555 33332 24455666666666666
Q ss_pred CCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCE
Q 047486 533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKV 612 (776)
Q Consensus 533 ~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 612 (776)
++ +|..+ . .++.|+.|++++|++.+.+|..++.+++|+.
T Consensus 219 ~~-l~~~l-~---------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 219 SA-LGPAI-H---------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp CC-CCGGG-G---------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred Cc-Cchhh-c---------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 63 33321 1 1466788888888888888888899999999
Q ss_pred EeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcce
Q 047486 613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 669 (776)
Q Consensus 613 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 669 (776)
|+|++|++.+.+|..+.++++|++|||++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999899999999999999999999999999999999999999988877653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.7e-26 Score=234.78 Aligned_cols=210 Identities=20% Similarity=0.210 Sum_probs=124.8
Q ss_pred CccEEECCCCcCCccCcccccCCCCccEEEcCCCc-CcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEc
Q 047486 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK-LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL 501 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 501 (776)
+|++|++++|.+++..+..|..+++|++|++++|. ++...|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 34444444444444444444444444444444443 44333444444444444444444444444444444444555555
Q ss_pred cCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHH
Q 047486 502 RSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQK 581 (776)
Q Consensus 502 ~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (776)
++|++.+..+... ..+++|+.|++++|.+++ +|...+..
T Consensus 137 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~-------------------------------------- 175 (285)
T 1ozn_A 137 QDNALQALPDDTF--RDLGNLTHLFLHGNRISS-VPERAFRG-------------------------------------- 175 (285)
T ss_dssp CSSCCCCCCTTTT--TTCTTCCEEECCSSCCCE-ECTTTTTT--------------------------------------
T ss_pred CCCcccccCHhHh--ccCCCccEEECCCCcccc-cCHHHhcC--------------------------------------
Confidence 5444443322211 344555555555555542 22221211
Q ss_pred hhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccc
Q 047486 582 ILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 661 (776)
Q Consensus 582 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 661 (776)
++.|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.. .-...++.+
T Consensus 176 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~ 253 (285)
T 1ozn_A 176 -LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF 253 (285)
T ss_dssp -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred -ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence 456678888888888778888888999999999999999877777899999999999999998655432 222446667
Q ss_pred cCccCcceecCCCC
Q 047486 662 NLSYNRLWGRIPRG 675 (776)
Q Consensus 662 ~ls~N~l~g~iP~~ 675 (776)
..+.+.+.+..|..
T Consensus 254 ~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 254 RGSSSEVPCSLPQR 267 (285)
T ss_dssp CSEECCCBEEESGG
T ss_pred ccccCccccCCchH
Confidence 78888888888864
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=249.33 Aligned_cols=282 Identities=20% Similarity=0.256 Sum_probs=197.7
Q ss_pred CCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCC
Q 047486 304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNN 383 (776)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 383 (776)
.|+.....+.+++.++ .+|...+ ++|++|++++|.+++++...+. .+++|++|++++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~------------------~l~~L~~L~L~~n 86 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQ------------------RCVNLQALVLTSN 86 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTT------------------TCTTCCEEECTTS
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhc------------------cCCCCCEEECCCC
Confidence 4566667899999998 6777653 5899999999999987654332 2345566666666
Q ss_pred cCccCCCccccCCCCCCEEEccCCcCcccCCch-hhhcCCCccEEECCCCcCCccCc-ccccCCCCccEEEcCCC-cCcC
Q 047486 384 KLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPC-LGNFSTELITLHLKNNSLEGHIH-DTFANASHLRSLDLNSN-KLEG 460 (776)
Q Consensus 384 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~ 460 (776)
.+.+..+..|.++++|++|++++|+++ .+|.. +..+. +|++|++++|.+++..+ ..|..+++|++|++++| .+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 87 GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred ccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 666666667777777777777777777 45544 44443 67777777777775544 46777777777777777 4565
Q ss_pred CCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCccc
Q 047486 461 PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 540 (776)
Q Consensus 461 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~ 540 (776)
..+..+.++++|++|++++|++++..|..+..+++|++|++++|++.... .. ....+++|+.|++++|.+++..+..+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL-EI-FVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH-HH-HHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch-hh-hhhhcccccEEECCCCcccccccccc
Confidence 55667777777777777777777777777777777777777777764321 11 11236677888888887775433221
Q ss_pred ccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc----cchhhhccCCCCCEEeCC
Q 047486 541 FPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG----EIPEVLGNFKSLKVLNLS 616 (776)
Q Consensus 541 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls 616 (776)
.. . .....++.++++++.+++ .+|..+..+++|+.|+|+
T Consensus 243 -~~---~---------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 243 -ST---G---------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp -----------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred -cc---c---------------------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 00 0 013445666777777665 478889999999999999
Q ss_pred CCcCcccCCcc-ccccCCCcEEeccCccCcCCCc
Q 047486 617 HNSLTGNIPVS-FENMTALESLDLSFNKLDGRIP 649 (776)
Q Consensus 617 ~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 649 (776)
+|+++. +|.. |.++++|++|+|++|++.+..|
T Consensus 286 ~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999994 5555 6999999999999999997654
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.6e-26 Score=241.72 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=141.0
Q ss_pred CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccC
Q 047486 31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLREL 110 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L 110 (776)
.+++++|+|++|.+. .+|..+.++ ++|++|+|++|.+. .+|..++++++|++|++++| .+. .+|.. +.++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~-~lp~~-----l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLR-ALPAS-----IASL 149 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCC-CCCGG-----GGGC
T ss_pred ccceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccc-cCcHH-----HhcC
Confidence 355666666666655 334455555 56666666666665 55555666666666666666 554 44544 4444
Q ss_pred CCCcEEEccCCcccccccccccC---------CCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccC
Q 047486 111 DLLSVLDIGFCNFTGSIPTSIGN---------LTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181 (776)
Q Consensus 111 ~~L~~L~Ls~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 181 (776)
++|++|++++|++.+.+|..++. +++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence 44666666665555555555443 666666666666666 55666666666666666666666 34555666
Q ss_pred CCCCCEEEccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEE
Q 047486 182 LPSLLSIDLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFL 260 (776)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 260 (776)
+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+| ..+..+++|+.+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l 306 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCII 306 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEE
Confidence 66666666666666654433 3444667777777776666777777777777777777777776666 567777777777
Q ss_pred eccCCCCC
Q 047486 261 DLSNNSLL 268 (776)
Q Consensus 261 ~Ls~n~i~ 268 (776)
++..+.+.
T Consensus 307 ~l~~~~~~ 314 (328)
T 4fcg_A 307 LVPPHLQA 314 (328)
T ss_dssp ECCGGGSC
T ss_pred eCCHHHHH
Confidence 77766543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=238.07 Aligned_cols=228 Identities=21% Similarity=0.199 Sum_probs=202.4
Q ss_pred CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486 400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK 479 (776)
Q Consensus 400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 479 (776)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67888888887 777654 34899999999999998888999999999999999999988899999999999999999
Q ss_pred Cc-cCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceec
Q 047486 480 NM-ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 558 (776)
Q Consensus 480 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~ 558 (776)
|+ +....|..+..+++|++|++++|.+.+..+... ..+++|++|++++|.+++. |...+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~--------------- 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQAL-PDDTFRD--------------- 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCC-CTTTTTT---------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccccc-CHhHhcc---------------
Confidence 97 888778999999999999999999988666544 6789999999999999853 3332222
Q ss_pred ccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEe
Q 047486 559 MGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 638 (776)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 638 (776)
++.|+.|++++|++++..+..|..+++|+.|++++|.+++..|..|.++++|+.|+
T Consensus 152 ------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 152 ------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp ------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 56789999999999988777899999999999999999999999999999999999
Q ss_pred ccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486 639 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673 (776)
Q Consensus 639 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 673 (776)
+++|++++..+..+..+++|++|++++|++.+..+
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 99999998888889999999999999999987544
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.1e-28 Score=254.69 Aligned_cols=249 Identities=22% Similarity=0.234 Sum_probs=190.7
Q ss_pred CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcC-cccCCchhh-------hcCCCccEEECCCCcCCccCcccc--c
Q 047486 374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL-SGTIPPCLG-------NFSTELITLHLKNNSLEGHIHDTF--A 443 (776)
Q Consensus 374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~--~ 443 (776)
+|+.+++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. .+. +|++|++++|.+++..|..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHh
Confidence 345566666666 556555433 77788888877 345665554 344 78888888888887777765 7
Q ss_pred CCCCccEEEcCCCcCcCCCChhhhcC-----CCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccC--CCCCCC
Q 047486 444 NASHLRSLDLNSNKLEGPLPRSLAKC-----IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL--CNSNIT 516 (776)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~ 516 (776)
.+++|++|+|++|++++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+.+ +....+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 888888888888888877 7777776 88889999888888888888888889999999988876642 223333
Q ss_pred cCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcc
Q 047486 517 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRF 596 (776)
Q Consensus 517 ~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 596 (776)
..+++|++|++++|.+++ ++.. .......++.|+.|++++|++
T Consensus 198 ~~l~~L~~L~L~~N~l~~-~~~~------------------------------------~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMET-PSGV------------------------------------CSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp TSCTTCCEEECTTSCCCC-HHHH------------------------------------HHHHHHTTCCCSEEECTTSCC
T ss_pred ccCCCCCEEECCCCcCcc-hHHH------------------------------------HHHHHhcCCCCCEEECCCCcC
Confidence 568889999999998873 1110 001112257889999999999
Q ss_pred cccch-hhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 597 HGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 597 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 98775 55777899999999999999 7787776 8999999999999976 66 8999999999999999975
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.8e-25 Score=247.19 Aligned_cols=269 Identities=23% Similarity=0.264 Sum_probs=192.8
Q ss_pred cccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcC
Q 047486 306 EELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKL 385 (776)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 385 (776)
.+++.|++++|.++ .+|.... ++|++|++++|.++.++. .+++|++|++++|++++ +|..+++|++|++++|.+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCCC
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCcC
Confidence 35889999999988 7777653 788999999998887766 67788888888888774 444778888888888888
Q ss_pred ccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChh
Q 047486 386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465 (776)
Q Consensus 386 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 465 (776)
.+. |. .+++|+.|++++|+++ .+|..+ ++|++|++++|.+++.. . .+++|+.|++++|.+++ +|
T Consensus 114 ~~l-~~---~l~~L~~L~L~~N~l~-~lp~~l----~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 114 THL-PA---LPSGLCKLWIFGNQLT-SLPVLP----PGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CCC-CC---CCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC--
T ss_pred CCC-CC---CCCCcCEEECCCCCCC-cCCCCC----CCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc--
Confidence 753 33 4677888888888887 566542 47888888888887542 2 34678888888888875 34
Q ss_pred hhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChH
Q 047486 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSME 545 (776)
Q Consensus 466 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~ 545 (776)
..+++|+.|++++|++++. |. ..++|+.|++++|.+... +. .+++|+.|++++|.+++ +|..
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~~-----~~~~L~~L~Ls~N~L~~-lp~~------ 239 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSL-PA-----LPSGLKELIVSGNRLTS-LPVL------ 239 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-CC-----CCTTCCEEECCSSCCSC-CCCC------
T ss_pred -ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccccc-CC-----CCCCCCEEEccCCccCc-CCCC------
Confidence 4467788888888887753 32 246778888888877642 21 24667788888877764 4411
Q ss_pred HhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCC
Q 047486 546 AMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625 (776)
Q Consensus 546 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 625 (776)
+++|+.|++++|++++ +|. .+++|+.|+|++|+++ .+|
T Consensus 240 -------------------------------------l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 240 -------------------------------------PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCC
T ss_pred -------------------------------------CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCC
Confidence 3456777777777773 444 5677777777777777 567
Q ss_pred ccccccCCCcEEeccCccCcCCCchhhcccc
Q 047486 626 VSFENMTALESLDLSFNKLDGRIPEQLLSVT 656 (776)
Q Consensus 626 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 656 (776)
..|.++++|+.|+|++|++++.+|..+..++
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 7777777777777777777777777666655
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6e-25 Score=247.10 Aligned_cols=263 Identities=26% Similarity=0.278 Sum_probs=174.8
Q ss_pred ccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCc
Q 047486 331 KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410 (776)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 410 (776)
..++.|++++|.++.++....++|+.|++++|.++. +|..+++|++|++++|++++ +|. .+++|++|++++|.++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence 346777777777777666555677777777777763 44466777777777777763 443 5677777777777776
Q ss_pred ccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhh
Q 047486 411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490 (776)
Q Consensus 411 ~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 490 (776)
.+|. ..++|+.|++++|+++++.. .+++|++|++++|++++. |. .+.+|+.|++++|++++. |
T Consensus 115 -~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~--- 177 (622)
T 3g06_A 115 -HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-P--- 177 (622)
T ss_dssp -CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---
T ss_pred -CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-c---
Confidence 4554 22367777777777775332 236777777777777743 32 245677777777777653 3
Q ss_pred cCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEE
Q 047486 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV 570 (776)
Q Consensus 491 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 570 (776)
..+++|+.|++++|.+.+ ++. ..++|+.|++++|.++ .+|..
T Consensus 178 ~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~-~l~~~------------------------------- 219 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLT-SLPAL------------------------------- 219 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCS-SCCCC-------------------------------
T ss_pred ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCccc-ccCCC-------------------------------
Confidence 445777777777777765 221 2356777777777776 23321
Q ss_pred EeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch
Q 047486 571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 650 (776)
Q Consensus 571 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 650 (776)
+++|+.|++++|++++ +| ..+++|+.|+|++|+++ .+|. .+++|+.|+|++|+++ .+|.
T Consensus 220 ------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 220 ------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp ------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred ------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 2456777777777775 44 45567777777777777 4454 4567777777777777 5677
Q ss_pred hhccccccccccCccCcceecCCC
Q 047486 651 QLLSVTALALLNLSYNRLWGRIPR 674 (776)
Q Consensus 651 ~l~~l~~L~~L~ls~N~l~g~iP~ 674 (776)
.+..+++|+.|++++|+++|.+|.
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred HHhhccccCEEEecCCCCCCcCHH
Confidence 777777777777777777776654
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=240.54 Aligned_cols=264 Identities=16% Similarity=0.137 Sum_probs=194.9
Q ss_pred CCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEE
Q 047486 7 LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQIL 86 (776)
Q Consensus 7 L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L 86 (776)
++..+++.+.+. ......+..+++|++|++++|.+.+..|..+..+ ++|++|+|++|.+++..+ +..+++|++|
T Consensus 12 l~i~~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHH---HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchh---hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 455566666554 3344566778899999999999999988899999 999999999999986654 8899999999
Q ss_pred eccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEc
Q 047486 87 FLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDL 166 (776)
Q Consensus 87 ~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 166 (776)
++++| .+.+. ...+.|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++
T Consensus 86 ~Ls~n-~l~~l----------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 86 DLNNN-YVQEL----------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp ECCSS-EEEEE----------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred ECcCC-ccccc----------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 99999 76642 2234499999999999865544 3678999999999999877878889999999999
Q ss_pred cCCcCCCCCCcccc-CCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccc
Q 047486 167 SGNYFQGGVPSWLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245 (776)
Q Consensus 167 ~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 245 (776)
++|.+++..+..+. .+++|++|++++|.+++..+... +++|++|++++|.+++ +|..+..+++|++|++++|.+. .
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~ 228 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-L 228 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-E
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-c
Confidence 99999877676664 68889999999888876533323 3677777777777763 3444666677777777777666 4
Q ss_pred cCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccC-cccc
Q 047486 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN-RIQG 320 (776)
Q Consensus 246 i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n-~l~~ 320 (776)
++ ..+..+++|++|++++|++.. . .+|.++..+++|+.++++++ .+.+
T Consensus 229 l~-~~~~~l~~L~~L~l~~N~~~~---~-----------------------~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 229 IE-KALRFSQNLEHFDLRGNGFHC---G-----------------------TLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EC-TTCCCCTTCCEEECTTCCCBH---H-----------------------HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hh-hHhhcCCCCCEEEccCCCccC---c-----------------------CHHHHHhccccceEEECCCchhccC
Confidence 44 345556666666666665321 0 35677888888888888844 3443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=241.64 Aligned_cols=219 Identities=20% Similarity=0.191 Sum_probs=149.2
Q ss_pred CcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcC
Q 047486 375 TKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLN 454 (776)
Q Consensus 375 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 454 (776)
|++|++++|.+.+..+ +..+++|++|++++|.++ .++.. ++|++|++++|.+++..+.. +++|++|+++
T Consensus 60 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~~-----~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~ 128 (317)
T 3o53_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNISRVSCSR---GQGKKNIYLA 128 (317)
T ss_dssp CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEEC-----TTCCEEECCSSCCSEEEECC---CSSCEEEECC
T ss_pred CCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccCC-----CCcCEEECCCCccCCcCccc---cCCCCEEECC
Confidence 3444444444443332 566667777777777666 33321 35777777777776554433 4567777777
Q ss_pred CCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc-CCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486 455 SNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG-SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533 (776)
Q Consensus 455 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~ 533 (776)
+|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.+.+.... ..
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~--------------- 189 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VV--------------- 189 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CC---------------
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----cc---------------
Confidence 7777766666666677777777777777666555543 455666666655555432100 01
Q ss_pred CCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEE
Q 047486 534 GFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVL 613 (776)
Q Consensus 534 ~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 613 (776)
++.|+.|++++|++++. |..+..+++|+.|
T Consensus 190 -------------------------------------------------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L 219 (317)
T 3o53_A 190 -------------------------------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWI 219 (317)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCSEE
T ss_pred -------------------------------------------------cccCCEEECCCCcCCcc-hhhhcccCcccEE
Confidence 34567777777777754 4458889999999
Q ss_pred eCCCCcCcccCCccccccCCCcEEeccCccCc-CCCchhhccccccccccCccC-cceecCCC
Q 047486 614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTALALLNLSYN-RLWGRIPR 674 (776)
Q Consensus 614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~N-~l~g~iP~ 674 (776)
+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++| .+.|..|.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999 57888999999999999999999 788899999999999999955 67776554
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2e-28 Score=279.91 Aligned_cols=443 Identities=14% Similarity=0.073 Sum_probs=228.0
Q ss_pred EEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCC---C------------hhhHhhccCCccEEEcCCCCCCccC
Q 047486 9 HLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLI---K------------PFSLLNLSSTMTDLDLGGTRIKGNF 73 (776)
Q Consensus 9 ~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---~------------~~~~~~l~~~L~~L~Ls~~~l~~~~ 73 (776)
.++++++.. ......+.++++|++|+++++..... . +.....+ ++|++|+|++|.+++..
T Consensus 47 ~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~ 121 (594)
T 2p1m_B 47 KVFIGNCYA----VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDC 121 (594)
T ss_dssp EEEESSTTS----SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHH
T ss_pred EEeeccccc----cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHH
Confidence 455554432 22234566777888888877642110 0 1112345 67788888877776655
Q ss_pred CCCCC-CCCCCCEEeccCCCCcccc-CCCCCCCCCcccCCCCcEEEccCCccccccccccc----CCCCCCEEEccCCc-
Q 047486 74 PDDIF-RLPNLQILFLNLNSQLTGY-LPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG----NLTRATEIAFASNH- 146 (776)
Q Consensus 74 ~~~l~-~l~~L~~L~Ls~n~~~~~~-~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~----~l~~L~~L~L~~n~- 146 (776)
+..+. .+++|++|++++|..+.+. ++.. +..+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 196 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAI-----AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHHHHHHH-----HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCS
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-----HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCC
Confidence 54454 5677788887777323221 2211 23455577777777776654443333 56677777777775
Q ss_pred -ccCC-CchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcC-------CCcCCCCCCCCCCcEE-EccCC
Q 047486 147 -FTGQ-LPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNML-------NGPIDLFQLPNSLQDV-RLEEN 216 (776)
Q Consensus 147 -l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-------~~~~~~~~~~~~L~~L-~L~~n 216 (776)
+... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+.. .+..+.+..+++|+.| .+.+.
T Consensus 197 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~ 276 (594)
T 2p1m_B 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC
T ss_pred cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc
Confidence 2111 112224567777777777732223566667777777777665431 1111111222444444 12111
Q ss_pred cCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC
Q 047486 217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT 296 (776)
Q Consensus 217 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 296 (776)
.. +.++..+..+++|++|++++|.+.+......+..+++|++|++++| +. ..
T Consensus 277 ~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~----------------------- 328 (594)
T 2p1m_B 277 VP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE---DA----------------------- 328 (594)
T ss_dssp CG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---HH-----------------------
T ss_pred ch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC---HH-----------------------
Confidence 11 1222222334445555555544432211122334444444444443 11 00
Q ss_pred CcchhhhCCcccceEeccc---------CccccccCCCcccCCccCCeEeCcCccccccccc----cccccCEEeccCcc
Q 047486 297 EFPGFLRNSEELYLLDLSN---------NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH----PWMNITTLDLRNNR 363 (776)
Q Consensus 297 ~lp~~l~~~~~L~~L~L~~---------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~ 363 (776)
.++.....+++|+.|++++ +.+++........++++|+.|.+..+.++..... .+++|+.|+++.+.
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 1112222345555555522 2232221111112355566665555555443321 23344444444110
Q ss_pred cCCCCCCCCCCCcEEEccCCcCcc-----CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccC
Q 047486 364 IQGSILVPPPSTKVLLVSNNKLSG-----KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI 438 (776)
Q Consensus 364 l~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 438 (776)
..+ .+.++. .++..+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..
T Consensus 409 ~~~---------------~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 409 PKA---------------PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp TTC---------------CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred CCC---------------cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 000 011211 1122255677888888876 5655555555553447888888888876554
Q ss_pred cccc-cCCCCccEEEcCCCcCcCCCCh-hhhcCCCCcEEEcCCCccCcccchhh-cCCCCcCEEEccCCc
Q 047486 439 HDTF-ANASHLRSLDLNSNKLEGPLPR-SLAKCIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLRSNR 505 (776)
Q Consensus 439 ~~~~-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~ 505 (776)
...+ ..+++|+.|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 4444 5678888888888888544333 34457888888888888865444444 467777776666554
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=8.6e-26 Score=235.00 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCCCcEEEccCCcCccCCCccc--cCCCCCCEEEccCCcCcccCCchhhhcC----CCccEEECCCCcCCccCcccccCC
Q 047486 372 PPSTKVLLVSNNKLSGKIPPSI--CSLSSLQYLSLSDNNLSGTIPPCLGNFS----TELITLHLKNNSLEGHIHDTFANA 445 (776)
Q Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~l 445 (776)
+++|++|++++|.+.+.+|..+ ..+++|++|++++|++++. |..+.... ++|++|++++|++++..+..|..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4567777777777777777765 7788888888888888855 77666651 378888888888887777888888
Q ss_pred CCccEEEcCCCcCcCC--CChhh--hcCCCCcEEEcCCCccCcc---cchhhcCCCCcCEEEccCCcccccCCCCCCCcC
Q 047486 446 SHLRSLDLNSNKLEGP--LPRSL--AKCIKLEVVNVGKNMISDS---FPCWLGSLHELKILVLRSNRFYGPLCNSNITFP 518 (776)
Q Consensus 446 ~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 518 (776)
++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ....+..+++|++|++++|++.+..+... ...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhh
Confidence 8888888888887654 23333 6778888888888887732 22334566777777777776665443221 122
Q ss_pred CCCccEEeCCCCcCC
Q 047486 519 FQALRIIDLSHNEFT 533 (776)
Q Consensus 519 l~~L~~LdLs~n~l~ 533 (776)
+++|++|++++|.++
T Consensus 252 l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK 266 (312)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cCCCCEEECCCCccC
Confidence 344555555555544
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=247.58 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=168.2
Q ss_pred CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 452 (776)
++|+.|++++|.+.+..|..|..+++|++|++++|.+++..| +..+. +|++|++++|.+++..+ .++|+.|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 456666666666666666677777777777777777764443 44443 67777777777765432 26777777
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcC
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l 532 (776)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+.+..+... ...+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence 777777765543 34667777777777777777777777777777777777776555433 12466777777777777
Q ss_pred CCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCE
Q 047486 533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKV 612 (776)
Q Consensus 533 ~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 612 (776)
++. |... .++.|+.|+|++|.+++..| .+..+++|+.
T Consensus 182 ~~~-~~~~-----------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~ 218 (487)
T 3oja_A 182 YDV-KGQV-----------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218 (487)
T ss_dssp CEE-ECCC-----------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred ccc-cccc-----------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCccE
Confidence 643 1110 04677888888888886544 4888999999
Q ss_pred EeCCCCcCcccCCccccccCCCcEEeccCccCc-CCCchhhccccccccccCcc
Q 047486 613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTALALLNLSY 665 (776)
Q Consensus 613 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~ 665 (776)
|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++.
T Consensus 219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 9999999985 6778888999999999999998 67778888888888888763
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-24 Score=239.95 Aligned_cols=246 Identities=17% Similarity=0.150 Sum_probs=189.3
Q ss_pred CChhHhhcCCC----CCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCcccc
Q 047486 22 RTFDLLASNLT----KLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGY 97 (776)
Q Consensus 22 ~~~~~~l~~l~----~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ 97 (776)
..+|..+..+. +|++|+|++|.+.+..|..+..+ ++|++|+|++|.+++..| +..+++|++|++++| .+.+.
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l 95 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQEL 95 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCC
Confidence 45666665554 89999999999999888889999 899999999999987665 889999999999999 77653
Q ss_pred CCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCc
Q 047486 98 LPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177 (776)
Q Consensus 98 ~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 177 (776)
. ..++|++|++++|.+++..+. .+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|.
T Consensus 96 ~----------~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 96 L----------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp E----------ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred C----------CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 2 224499999999999876554 457899999999999988888899999999999999999987887
Q ss_pred ccc-CCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCC
Q 047486 178 WLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256 (776)
Q Consensus 178 ~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~ 256 (776)
.+. .+++|++|++++|.+++..+... +++|++|++++|.+++ +|..+..+++|+.|++++|.+. .+| ..+..+++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~l~~l~~ 238 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIE-KALRFSQN 238 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EEC-TTCCCCTT
T ss_pred HHhhhCCcccEEecCCCcccccccccc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccc-hhhccCCC
Confidence 776 78999999999998887644333 4777777777777774 4444777777777777777776 344 34566666
Q ss_pred CCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecc
Q 047486 257 LQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLS 314 (776)
Q Consensus 257 L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~ 314 (776)
|+.|++++|++.. . .+|.++..++.|+.++++
T Consensus 239 L~~L~l~~N~l~c---~-----------------------~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHC---G-----------------------TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCH---H-----------------------HHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcC---c-----------------------chHHHHHhCCCCcEEecc
Confidence 6666666666321 0 246667777777777775
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.8e-24 Score=217.27 Aligned_cols=226 Identities=21% Similarity=0.197 Sum_probs=164.5
Q ss_pred EEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCc
Q 047486 402 LSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481 (776)
Q Consensus 402 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 481 (776)
++-.+..+. .+|..+ +++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444454 555543 2357777777777777666677777777777777777776666677777777777777777
Q ss_pred cCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCC-CCcccccChHHhhhccccCceeccc
Q 047486 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMG 560 (776)
Q Consensus 482 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~ 560 (776)
+++..+..+..+++|++|++++|++.+..+.. +..+++|++|++++|.+++. +|..+ .
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~-~------------------ 146 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF-S------------------ 146 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGG-G------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhh-c------------------
Confidence 77777777777777778877777776654433 25677788888888887652 34321 1
Q ss_pred CccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCC----EEeCCCCcCcccCCccccccCCCcE
Q 047486 561 GAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK----VLNLSHNSLTGNIPVSFENMTALES 636 (776)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~ 636 (776)
.++.|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+.. .+|+.
T Consensus 147 ---------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~ 204 (276)
T 2z62_A 147 ---------------------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKE 204 (276)
T ss_dssp ---------------------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEE
T ss_pred ---------------------cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccE
Confidence 156778888888888887777777777776 8999999998666655544 47999
Q ss_pred EeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486 637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674 (776)
Q Consensus 637 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 674 (776)
|+|++|++++..+..|..+++|+.|++++|++.+..|.
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 99999999877777788899999999999998876653
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8.1e-27 Score=266.60 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=46.7
Q ss_pred hcceeEEecCCCcccccchhhhcc-CCCCCEEeCCCCcCcccCCccc-cccCCCcEEeccCccCcCCCch-hhccccccc
Q 047486 583 LVMFRAMDFSRNRFHGEIPEVLGN-FKSLKVLNLSHNSLTGNIPVSF-ENMTALESLDLSFNKLDGRIPE-QLLSVTALA 659 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~ 659 (776)
++.|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++..+. ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 45566666655 555544444444 5666666666666655444333 4456666666666666433332 223356666
Q ss_pred cccCccCcc
Q 047486 660 LLNLSYNRL 668 (776)
Q Consensus 660 ~L~ls~N~l 668 (776)
+|++++|++
T Consensus 510 ~L~l~~~~~ 518 (594)
T 2p1m_B 510 SLWMSSCSV 518 (594)
T ss_dssp EEEEESSCC
T ss_pred EEeeeCCCC
Confidence 666666655
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.6e-23 Score=208.96 Aligned_cols=204 Identities=25% Similarity=0.253 Sum_probs=114.9
Q ss_pred CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486 32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD 111 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~ 111 (776)
++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+.++++|++|++++| .+.+..+.. +.+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA-----FSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCT
T ss_pred CCccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhh-----hcCCc
Confidence 356666666666666555556666 66666666666666555556666666666666666 555444433 34444
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCC-CchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCC----
Q 047486 112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLL---- 186 (776)
Q Consensus 112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---- 186 (776)
+|++|++++|.+++..+..++.+++|++|++++|.+++. +|..|.++++|++|++++|.+++..+..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 466666666666655444566666666666666666542 355666666666666666666655455554444444
Q ss_pred EEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCC
Q 047486 187 SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS 266 (776)
Q Consensus 187 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 266 (776)
+|++++|.+.+..+ ......+|++|++++|.++ .++...|..+++|++|++++|+
T Consensus 181 ~L~ls~n~l~~~~~------------------------~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNFIQP------------------------GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCEECT------------------------TSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCcccccCc------------------------cccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence 45555555443222 2222335555555555555 3343445555666666666665
Q ss_pred C
Q 047486 267 L 267 (776)
Q Consensus 267 i 267 (776)
+
T Consensus 236 ~ 236 (276)
T 2z62_A 236 W 236 (276)
T ss_dssp B
T ss_pred c
Confidence 3
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-22 Score=205.85 Aligned_cols=203 Identities=24% Similarity=0.228 Sum_probs=137.0
Q ss_pred CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477 (776)
Q Consensus 398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 477 (776)
..+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4677888888877 6776443 36888888888888777777888888888888888888666667777888888888
Q ss_pred CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557 (776)
Q Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~ 557 (776)
++|++++..+..|..+++|++|++++|++.+..+..+ ..+++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L----------------------------------- 135 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKL----------------------------------- 135 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTC-----------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCC-----------------------------------
Confidence 8888877666667777777777777776655333221 334444
Q ss_pred cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 637 (776)
+.|++++|.+++..+..|+.+++|+.|+|++|.+++..+..|.++++|++|
T Consensus 136 -----------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 136 -----------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp -----------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -----------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 445555555554444445666666666666666665555556666666666
Q ss_pred eccCccCcCCCchhhccccccccccCccCccee
Q 047486 638 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 638 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
+|++|++++..+..+..+++|+.|++++|++.+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666666665555556666666666666666654
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=8.1e-24 Score=225.04 Aligned_cols=258 Identities=17% Similarity=0.177 Sum_probs=158.7
Q ss_pred EEccCCcCccCCCccccCCCCCCEEEccCCcCcccCC----chhhhcCCCccEEECCCCcCCccCcccccCC-----CCc
Q 047486 378 LLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIP----PCLGNFSTELITLHLKNNSLEGHIHDTFANA-----SHL 448 (776)
Q Consensus 378 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L 448 (776)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+...+.+|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666666555567777777777764433 3444443257777777777766655555543 677
Q ss_pred cEEEcCCCcCcCCCChhh----hcC-CCCcEEEcCCCccCcccchhhc----C-CCCcCEEEccCCcccccCCCCCC--C
Q 047486 449 RSLDLNSNKLEGPLPRSL----AKC-IKLEVVNVGKNMISDSFPCWLG----S-LHELKILVLRSNRFYGPLCNSNI--T 516 (776)
Q Consensus 449 ~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~--~ 516 (776)
++|+|++|.+++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|.+.+..+.... .
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 777777777776555533 333 6777777777777666554433 2 35777777777776642221110 0
Q ss_pred cCC-CCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhh-cceeEEecCCC
Q 047486 517 FPF-QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL-VMFRAMDFSRN 594 (776)
Q Consensus 517 ~~l-~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n 594 (776)
... ++|+.|++++|.+++..+..+... .... +.|+.|||++|
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------------------------------l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKF------------------------------------LASIPASVTSLDLSAN 206 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------------------HHTSCTTCCEEECTTS
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHH------------------------------------HHhCCCCCCEEECCCC
Confidence 122 367777887777765433221100 0112 46788888888
Q ss_pred ccccc----chhhhcc-CCCCCEEeCCCCcCcccCC----ccccccCCCcEEeccCccCcCCCch-------hhcccccc
Q 047486 595 RFHGE----IPEVLGN-FKSLKVLNLSHNSLTGNIP----VSFENMTALESLDLSFNKLDGRIPE-------QLLSVTAL 658 (776)
Q Consensus 595 ~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L 658 (776)
.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+. .+..+++|
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 88763 4455555 3578888888888876544 3345667888888888885544333 55667778
Q ss_pred ccccCccCcceec
Q 047486 659 ALLNLSYNRLWGR 671 (776)
Q Consensus 659 ~~L~ls~N~l~g~ 671 (776)
+.||+++|++.+.
T Consensus 287 ~~LdL~~N~l~~~ 299 (362)
T 3goz_A 287 ILVDKNGKEIHPS 299 (362)
T ss_dssp EEECTTSCBCCGG
T ss_pred EEEecCCCcCCCc
Confidence 8888888887654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.4e-22 Score=204.48 Aligned_cols=201 Identities=23% Similarity=0.236 Sum_probs=117.3
Q ss_pred cCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcc
Q 047486 29 SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR 108 (776)
Q Consensus 29 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~ 108 (776)
..+++|+.|++++|.+... ..+..+ ++|++|++++|.+.+ + ..+..+++|++|++++| .+.+..+.. +.
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l-~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 106 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYL-PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN-QLQSLPNGV-----FD 106 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS-CCCCCCTTT-----TT
T ss_pred ccccceeeeeeCCCCcccc--cccccC-CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC-ccCccChhH-----hc
Confidence 4456666666666665543 235555 666666666666653 2 34556666666666666 555433333 33
Q ss_pred cCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 047486 109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSI 188 (776)
Q Consensus 109 ~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 188 (776)
.+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 44446666666666665555556666666666666666665555555666666666666666665555555666666666
Q ss_pred EccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccC
Q 047486 189 DLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR 247 (776)
Q Consensus 189 ~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~ 247 (776)
++++|.+++..+. +..+++|++|++++|.+.+ .+++|+.|+++.|.+.|.+|
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 6666666654432 3344666666666665543 23456666666666666665
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.4e-22 Score=203.35 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=134.6
Q ss_pred cCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCc
Q 047486 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLE 473 (776)
Q Consensus 394 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 473 (776)
..+++|+.|++++|.+. .++ .+..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLP-NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCC-CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34456666666666554 333 233333 566666666655542 2455555555555555555555555555555555
Q ss_pred EEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhcccc
Q 047486 474 VVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQ 553 (776)
Q Consensus 474 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~ 553 (776)
+|++++|++++..+..+..+++ |++|++++|.+++. |...+..
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~--------------------------L~~L~L~~n~l~~~-~~~~~~~---------- 155 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTN--------------------------LTYLNLAHNQLQSL-PKGVFDK---------- 155 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTT--------------------------CCEEECCSSCCCCC-CTTTTTT----------
T ss_pred EEECCCCcCCccCHHHhccCCC--------------------------CCEEECCCCccCcc-CHHHhcc----------
Confidence 5555555555544444444444 45555555554422 2221211
Q ss_pred CceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCC
Q 047486 554 GRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633 (776)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 633 (776)
++.|+.|++++|++++..+..++.+++|+.|++++|++++..|..|..+++
T Consensus 156 -----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 156 -----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 456677888888888777777899999999999999999988888999999
Q ss_pred CcEEeccCccCcCCCchhhccccccccccCccCcceecCCCC
Q 047486 634 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675 (776)
Q Consensus 634 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 675 (776)
|+.|++++|++.+.. +.|+.+++++|.++|.+|..
T Consensus 207 L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 207 LQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 999999999998654 46889999999999999975
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=216.41 Aligned_cols=230 Identities=20% Similarity=0.180 Sum_probs=176.7
Q ss_pred CCCCEEEccCCcCccc----CCchhhhcCCCccEEECCCCcCCccCcccc--cCCCCccEEEcCCCcCcCCCC----hhh
Q 047486 397 SSLQYLSLSDNNLSGT----IPPCLGNFSTELITLHLKNNSLEGHIHDTF--ANASHLRSLDLNSNKLEGPLP----RSL 466 (776)
Q Consensus 397 ~~L~~L~Ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l 466 (776)
..++.+.+.++.+... ++.. .... +|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~-~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRV-LAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHH-HHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHh-cccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3466677776665421 1111 2233 58899999998888888877 888899999999999887655 345
Q ss_pred hcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccccc--CCCCCCCcCCCCccEEeCCCCcCCCCCCcccccCh
Q 047486 467 AKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP--LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSM 544 (776)
Q Consensus 467 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l 544 (776)
..+++|++|++++|++.+..+..+..+++|++|++++|++.+. ++.......+++|++|++++|.++. +|...
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~---- 216 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC---- 216 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH----
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH----
Confidence 6788999999999999888888899999999999999987653 2223333568899999999999862 22110
Q ss_pred HHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccC---CCCCEEeCCCCcCc
Q 047486 545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNF---KSLKVLNLSHNSLT 621 (776)
Q Consensus 545 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~ 621 (776)
......++.|+.|||++|++++.+|..+..+ ++|++|+|++|+++
T Consensus 217 --------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 217 --------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp --------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred --------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 0011236789999999999999888888877 69999999999999
Q ss_pred ccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 622 GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 622 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
.+|..+. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6787775 8999999999999964 43 6788999999999999864
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.6e-21 Score=194.80 Aligned_cols=199 Identities=21% Similarity=0.259 Sum_probs=106.0
Q ss_pred ccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCC
Q 047486 59 MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRAT 138 (776)
Q Consensus 59 L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 138 (776)
.++++++++.++ .+|..+. ++|++|++++| .+.+..+.. +.++++|++|++++|.++...+..|.++++|+
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSN-KLSSLPSKA-----FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSS-CCSCCCTTS-----SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCC-CCCeeCHHH-----hcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 444555554444 3343332 34455555544 443322222 33333355555555555433333445555555
Q ss_pred EEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCC-CCCCCCCcEEEccCCc
Q 047486 139 EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDL-FQLPNSLQDVRLEENE 217 (776)
Q Consensus 139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~ 217 (776)
+|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 555555555544444455555555555555555554445555555555555555555543322 2333555555555555
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486 218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267 (776)
Q Consensus 218 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i 267 (776)
+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 55555555667777777777777776 45555667777777777777763
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.7e-21 Score=197.13 Aligned_cols=203 Identities=23% Similarity=0.178 Sum_probs=104.8
Q ss_pred CCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhc
Q 047486 77 IFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS 156 (776)
Q Consensus 77 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 156 (776)
+.+++++++++++++ .++ .+|..+. + .+++|++++|.+++..+..|..+++|++|++++|.+++..+ .+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~-~------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-ALPPDLP-K------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG 74 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-SCCSCCC-T------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred ccccCCccEEECCCC-CCC-cCCCCCC-C------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CC
Confidence 345566666666666 554 3443321 1 26666666666665555666666666666666666654322 25
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236 (776)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 236 (776)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+++. .+..|..+++|++|+
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-----------------------~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-----------------------PLGALRGLGELQELY 130 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-----------------------CSSTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc-----------------------CHHHHcCCCCCCEEE
Confidence 5666666666666665 4455555555555555555555543 333444444444444
Q ss_pred CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccC
Q 047486 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN 316 (776)
Q Consensus 237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n 316 (776)
+++|++. .++...|..+++|++|++++|+++.++... +..+++|++|++++|.++.+|..+...++|+.+++++|
T Consensus 131 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHH----hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 4444444 333334444444444444444444333211 22344444444444444445544444455555555555
Q ss_pred ccc
Q 047486 317 RIQ 319 (776)
Q Consensus 317 ~l~ 319 (776)
.+.
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=4.4e-21 Score=196.52 Aligned_cols=202 Identities=23% Similarity=0.215 Sum_probs=134.4
Q ss_pred hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486 28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL 107 (776)
Q Consensus 28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l 107 (776)
+++++++++++++++.++.. |..+ ++++++|+|++|.+++..+..+.++++|++|++++| .+++..+ .
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-------D 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-------C
T ss_pred ccccCCccEEECCCCCCCcC-CCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-------C
Confidence 34556666666666666544 3222 256666666666666555566666666666666666 5553222 1
Q ss_pred ccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486 108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS 187 (776)
Q Consensus 108 ~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 187 (776)
..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 23344777777777766 55666677777777777777777666666777777777777777777666666677777777
Q ss_pred EEccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486 188 IDLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243 (776)
Q Consensus 188 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 243 (776)
|++++|+++...+. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77777777664432 344477777777777777 67778888889999999998875
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.4e-22 Score=198.53 Aligned_cols=203 Identities=18% Similarity=0.188 Sum_probs=139.3
Q ss_pred cCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCc-CcCCCChhhhcCCCCcEEEcCC-CccCcccchh
Q 047486 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK-LEGPLPRSLAKCIKLEVVNVGK-NMISDSFPCW 489 (776)
Q Consensus 412 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~ 489 (776)
.+|. + +.++++|++++|+++++.+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+.+
T Consensus 25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 6665 2 2368888888888887777788888888888888886 7766667888888888888887 8888777778
Q ss_pred hcCCCCcCEEEccCCcccccCCCCCCCcCCCCcc---EEeCCCC-cCCCCCCcccccChHHhhhccccCceecccCcccc
Q 047486 490 LGSLHELKILVLRSNRFYGPLCNSNITFPFQALR---IIDLSHN-EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565 (776)
Q Consensus 490 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~---~LdLs~n-~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 565 (776)
|..+++|++|++++|++.+ +|. +..+++|+ .|++++| .+++ +|...|..
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~---------------------- 153 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTS-IPVNAFQG---------------------- 153 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTT----------------------
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc---cccccccccccEEECCCCcchhh-cCcccccc----------------------
Confidence 8888888888888888776 333 24455555 7777777 6653 33222221
Q ss_pred ceEEEEeccchhhHHHhhccee-EEecCCCcccccchhhhccCCCCCEEeCCCCc-CcccCCcccccc-CCCcEEeccCc
Q 047486 566 ESITVAMQGHDFQLQKILVMFR-AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM-TALESLDLSFN 642 (776)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N 642 (776)
++.|+ .|++++|+++...+..+.. ++|+.|++++|+ +++..+..|.++ ++|+.||+++|
T Consensus 154 -----------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 154 -----------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp -----------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred -----------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 45566 7777777776333333444 677777777774 776666667777 77777777777
Q ss_pred cCcCCCchhhccccccccccCccC
Q 047486 643 KLDGRIPEQLLSVTALALLNLSYN 666 (776)
Q Consensus 643 ~l~~~~p~~l~~l~~L~~L~ls~N 666 (776)
++++..+. .+++|+.|+++++
T Consensus 216 ~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 216 SVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCT---TCTTCSEEECTTC
T ss_pred ccccCChh---HhccCceeeccCc
Confidence 77643333 4455666666654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5.8e-23 Score=218.41 Aligned_cols=262 Identities=18% Similarity=0.152 Sum_probs=187.4
Q ss_pred EeccCcccCCCCCC---CCCCCcEEEccCCcCccCCC----ccccCCC-CCCEEEccCCcCcccCCchhhhc----CCCc
Q 047486 357 LDLRNNRIQGSILV---PPPSTKVLLVSNNKLSGKIP----PSICSLS-SLQYLSLSDNNLSGTIPPCLGNF----STEL 424 (776)
Q Consensus 357 L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~~----~~~L 424 (776)
++++.|.+++.++. ...+|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+... .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34555555554332 24558888888888887666 6777888 89999999999987666666654 2479
Q ss_pred cEEECCCCcCCccCccc----ccCC-CCccEEEcCCCcCcCCCChhhhc-----CCCCcEEEcCCCccCccc----chhh
Q 047486 425 ITLHLKNNSLEGHIHDT----FANA-SHLRSLDLNSNKLEGPLPRSLAK-----CIKLEVVNVGKNMISDSF----PCWL 490 (776)
Q Consensus 425 ~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~----~~~~ 490 (776)
++|++++|.+++..+.. +..+ ++|++|+|++|++++..+..+.. +++|++|++++|++++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999998776664 4444 88999999999998776655443 468999999999998644 4445
Q ss_pred cCCC-CcCEEEccCCcccccCCCCCC--CcCC-CCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486 491 GSLH-ELKILVLRSNRFYGPLCNSNI--TFPF-QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566 (776)
Q Consensus 491 ~~l~-~L~~L~L~~n~l~~~~~~~~~--~~~l-~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 566 (776)
..++ +|++|++++|++.+..+.... .... ++|+.||+++|.+++.-...+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~------------------------ 218 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY------------------------ 218 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------------------------
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH------------------------
Confidence 5665 899999999998765443221 1223 58999999999987532211100
Q ss_pred eEEEEeccchhhHHHhhcceeEEecCCCcccccchh----hhccCCCCCEEeCCCCcCcccC-------CccccccCCCc
Q 047486 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPE----VLGNFKSLKVLNLSHNSLTGNI-------PVSFENMTALE 635 (776)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~ 635 (776)
.+....+.|+.|+|++|.+++..+. .+..+++|++|+|++|.+.+.. +..+.++++|+
T Consensus 219 -----------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 219 -----------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp -----------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred -----------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 0011135799999999999986653 3567799999999999955433 44677889999
Q ss_pred EEeccCccCcCCCchhhc
Q 047486 636 SLDLSFNKLDGRIPEQLL 653 (776)
Q Consensus 636 ~L~Ls~N~l~~~~p~~l~ 653 (776)
.||+++|++....+..+.
T Consensus 288 ~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 288 LVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp EECTTSCBCCGGGCHHHH
T ss_pred EEecCCCcCCCcchHHHH
Confidence 999999999877555543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.6e-23 Score=223.47 Aligned_cols=248 Identities=17% Similarity=0.239 Sum_probs=137.2
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCch----hhhcCCCccEEECCCCc---CCccCcccc-------cCCCCccEEEcC
Q 047486 389 IPPSICSLSSLQYLSLSDNNLSGTIPPC----LGNFSTELITLHLKNNS---LEGHIHDTF-------ANASHLRSLDLN 454 (776)
Q Consensus 389 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~----~~~~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~ 454 (776)
++..+..+++|++|++++|.+.+..+.. +..+. +|++|++++|. +++.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3344445555666666665555332222 22332 45666665542 223333332 456666666666
Q ss_pred CCcCcC----CCChhhhcCCCCcEEEcCCCccCcccchhhc----CC---------CCcCEEEccCCcccc-cCCCC-CC
Q 047486 455 SNKLEG----PLPRSLAKCIKLEVVNVGKNMISDSFPCWLG----SL---------HELKILVLRSNRFYG-PLCNS-NI 515 (776)
Q Consensus 455 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~-~~~~~-~~ 515 (776)
+|.+++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|++.. .++.. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666665 3455566666666666666666543333332 22 666666666666652 11100 01
Q ss_pred CcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc
Q 047486 516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR 595 (776)
Q Consensus 516 ~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 595 (776)
...+++|+.|++++|.++.. . ...+. ......++.|+.|+|++|.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~---g----~~~l~----------------------------~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE---G----IEHLL----------------------------LEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH---H----HHHHH----------------------------HTTGGGCTTCCEEECCSSC
T ss_pred HHhCCCcCEEECcCCCCCHh---H----HHHHH----------------------------HHHhhcCCCccEEECcCCC
Confidence 12355666677766666410 0 00000 0000124566777777777
Q ss_pred cc----ccchhhhccCCCCCEEeCCCCcCccc----CCccccc--cCCCcEEeccCccCcC----CCchhh-cccccccc
Q 047486 596 FH----GEIPEVLGNFKSLKVLNLSHNSLTGN----IPVSFEN--MTALESLDLSFNKLDG----RIPEQL-LSVTALAL 660 (776)
Q Consensus 596 l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~ 660 (776)
++ +.+|..+..+++|+.|+|++|.+++. +|..+.. +++|++|+|++|.+++ .+|..+ .++++|++
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 75 45666777777777777777777755 4555533 7777777777777776 366666 55677777
Q ss_pred ccCccCcceecC
Q 047486 661 LNLSYNRLWGRI 672 (776)
Q Consensus 661 L~ls~N~l~g~i 672 (776)
|++++|++++..
T Consensus 308 L~l~~N~l~~~~ 319 (386)
T 2ca6_A 308 LELNGNRFSEED 319 (386)
T ss_dssp EECTTSBSCTTS
T ss_pred EEccCCcCCcch
Confidence 777777776544
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.7e-22 Score=211.50 Aligned_cols=249 Identities=17% Similarity=0.174 Sum_probs=151.8
Q ss_pred cEEEccCCcCccCCCccccCC--CCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCcc-CcccccCCCCccEEE
Q 047486 376 KVLLVSNNKLSGKIPPSICSL--SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH-IHDTFANASHLRSLD 452 (776)
Q Consensus 376 ~~L~l~~n~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 452 (776)
+.++++++.+. +..+..+ +.++.|++++|.+.+..+. ++.+. +|++|++++|.+++. ++..+..+++|++|+
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 44444444433 2333333 5556666666655544333 23332 566666666665543 455555666666666
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcc-cchhhcCCCCcCEEEccCC-ccccc-CCCCCCCcCCC-CccEEeC
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDS-FPCWLGSLHELKILVLRSN-RFYGP-LCNSNITFPFQ-ALRIIDL 527 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~LdL 527 (776)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.. ...++ +|++|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~l 202 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLNL 202 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEEC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEEe
Confidence 6666665555556666666666666666 45542 4445556666666666666 55432 1111 13455 6677777
Q ss_pred CCCc--CCC-CCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc-ccccchhh
Q 047486 528 SHNE--FTG-FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR-FHGEIPEV 603 (776)
Q Consensus 528 s~n~--l~~-~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~ 603 (776)
++|. +++ .+| .....++.|+.|++++|. +++..+..
T Consensus 203 ~~~~~~~~~~~l~----------------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 203 SGYRKNLQKSDLS----------------------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp CSCGGGSCHHHHH----------------------------------------HHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred CCCcccCCHHHHH----------------------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 7663 321 111 111236788999999999 77788889
Q ss_pred hccCCCCCEEeCCCCc-CcccCCccccccCCCcEEeccCccCcCCCchhhccc-cccccccCccCcceecCCCC
Q 047486 604 LGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSYNRLWGRIPRG 675 (776)
Q Consensus 604 l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~ 675 (776)
+..+++|+.|++++|. +.......++++++|+.|++++| ++ .+.+..+ ..+..|++++|++++..|..
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 9999999999999995 33222236888999999999999 43 2244444 34888889999999888753
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=202.44 Aligned_cols=229 Identities=20% Similarity=0.170 Sum_probs=181.0
Q ss_pred CCCCCEEeCCCccCCCCChh---hHhhccCCccEEEcCCCCCCccCCCCC--CCCCCCCEEeccCCCCccccCCCCCCCC
Q 047486 31 LTKLSLLHLGATNMSLIKPF---SLLNLSSTMTDLDLGGTRIKGNFPDDI--FRLPNLQILFLNLNSQLTGYLPKSNWSS 105 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~---~~~~l~~~L~~L~Ls~~~l~~~~~~~l--~~l~~L~~L~Ls~n~~~~~~~p~~~~~~ 105 (776)
...++.+.+.++.+...... .+..+ ++|++|++++|.+.+..|..+ .++++|++|++++| .+.+..+.. ...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~-~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWL-AEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSH-HHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhh-HHH
Confidence 44578899988877543211 22344 679999999999999999888 89999999999999 887654421 000
Q ss_pred CcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCC--C--chhhcCCCCCCEEEccCCcCCCCCCc----
Q 047486 106 PLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQ--L--PHHVSGLSYLTTFDLSGNYFQGGVPS---- 177 (776)
Q Consensus 106 ~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~~~---- 177 (776)
.+..+++|++|++++|.+++..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH
Confidence 123566799999999999988889999999999999999997642 2 2334789999999999999973 333
Q ss_pred cccCCCCCCEEEccCCcCCCcCC-CCC---CCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCC
Q 047486 178 WLFTLPSLLSIDLSKNMLNGPID-LFQ---LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSK 253 (776)
Q Consensus 178 ~l~~l~~L~~L~l~~n~l~~~~~-~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~ 253 (776)
.+..+++|++|++++|.+.+..| .+. .+++|++|++++|.++ .+|..+. ++|++|++++|++++ ++ .+..
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~--~~~~ 292 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-AP--QPDE 292 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CC--CTTS
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cc--hhhh
Confidence 35788999999999999998633 332 2379999999999999 6787775 899999999999984 34 3688
Q ss_pred CCCCCEEeccCCCCCc
Q 047486 254 LKKLQFLDLSNNSLLS 269 (776)
Q Consensus 254 l~~L~~L~Ls~n~i~~ 269 (776)
+++|++|++++|++++
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 9999999999999653
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.2e-22 Score=214.96 Aligned_cols=249 Identities=21% Similarity=0.243 Sum_probs=177.2
Q ss_pred CCCCcEEEccCCcCccCCC----ccccCCCCCCEEEccCC---cCcccCCchh-------hhcCCCccEEECCCCcCCc-
Q 047486 372 PPSTKVLLVSNNKLSGKIP----PSICSLSSLQYLSLSDN---NLSGTIPPCL-------GNFSTELITLHLKNNSLEG- 436 (776)
Q Consensus 372 ~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n---~l~~~~p~~~-------~~~~~~L~~L~L~~n~l~~- 436 (776)
+++|+.|++++|.+....+ ..+..+++|++|++++| ++.+.+|..+ ..+ ++|++|++++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCCcCCHH
Confidence 3456667777776665433 34667888888888885 4444556554 344 478888888888876
Q ss_pred ---cCcccccCCCCccEEEcCCCcCcCCCChh----hhcC---------CCCcEEEcCCCccC-cccc---hhhcCCCCc
Q 047486 437 ---HIHDTFANASHLRSLDLNSNKLEGPLPRS----LAKC---------IKLEVVNVGKNMIS-DSFP---CWLGSLHEL 496 (776)
Q Consensus 437 ---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L 496 (776)
.++..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|+++ ...+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 46667788888888888888886544433 3334 88899999988887 3444 466788889
Q ss_pred CEEEccCCccccc-----CCCCCCCcCCCCccEEeCCCCcCCC----CCCcccccChHHhhhccccCceecccCccccce
Q 047486 497 KILVLRSNRFYGP-----LCNSNITFPFQALRIIDLSHNEFTG----FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 567 (776)
Q Consensus 497 ~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~LdLs~n~l~~----~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 567 (776)
++|++++|++... .+.. ...+++|+.|+|++|.++. .+|..
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~--l~~~~~L~~L~Ls~n~l~~~g~~~l~~~---------------------------- 239 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHLGSSALAIA---------------------------- 239 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHHHHHHHHHH----------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHH--hhcCCCccEEECcCCCCCcHHHHHHHHH----------------------------
Confidence 9999999888621 2212 2567889999999998852 22211
Q ss_pred EEEEeccchhhHHHhhcceeEEecCCCccccc----chhhhc--cCCCCCEEeCCCCcCcc----cCCccc-cccCCCcE
Q 047486 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLG--NFKSLKVLNLSHNSLTG----NIPVSF-ENMTALES 636 (776)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~ 636 (776)
...++.|+.|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+ .++++|++
T Consensus 240 ------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 240 ------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp ------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred ------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 11257889999999999876 567774 49999999999999998 488877 67899999
Q ss_pred EeccCccCcCCCc--hhhc-cccccccccC
Q 047486 637 LDLSFNKLDGRIP--EQLL-SVTALALLNL 663 (776)
Q Consensus 637 L~Ls~N~l~~~~p--~~l~-~l~~L~~L~l 663 (776)
|+|++|++++..| ..+. .++.++.+++
T Consensus 308 L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 308 LELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp EECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred EEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 9999999998775 3332 2445554444
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.6e-20 Score=194.44 Aligned_cols=193 Identities=21% Similarity=0.332 Sum_probs=97.8
Q ss_pred CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcE
Q 047486 395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV 474 (776)
Q Consensus 395 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 474 (776)
.+++|++|++++|.+. .+| .+..+. +|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~-~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccC-CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3455555555555554 333 233333 45555555555554433 55555566666666555543 24555555555
Q ss_pred EEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccC
Q 047486 475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG 554 (776)
Q Consensus 475 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~ 554 (776)
|++++|++++..+ +..+++|++|++++|++.+..+ ...++
T Consensus 112 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~---------------------------------- 151 (308)
T 1h6u_A 112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP----LAGLT---------------------------------- 151 (308)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GGGCT----------------------------------
T ss_pred EECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc----ccCCC----------------------------------
Confidence 5555555554321 4455555555555554443221 12333
Q ss_pred ceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCC
Q 047486 555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 634 (776)
.|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|
T Consensus 152 ------------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 152 ------------------------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNL 197 (308)
T ss_dssp ------------------------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred ------------------------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCC
Confidence 44445555555543222 5555555555555555554322 5555555
Q ss_pred cEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486 635 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670 (776)
Q Consensus 635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 670 (776)
++|+|++|++++..| +..+++|+.|++++|++++
T Consensus 198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 555555555554332 4555555555555555543
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.5e-20 Score=187.39 Aligned_cols=150 Identities=19% Similarity=0.155 Sum_probs=78.9
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCchhhcCCCCCCEEEccC-CcCCCCCCccccCCCCCCEEEc
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGLSYLTTFDLSG-NYFQGGVPSWLFTLPSLLSIDL 190 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l 190 (776)
|++|++++|++++..+..|.++++|++|++++|. ++...+.+|.++++|++|++++ |.+++..+.+|.++++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 5566666666655444456666666666666664 5544444566666666666665 6665544555566666666666
Q ss_pred cCCcCCCcCCCCCCCCCCc---EEEccCC-cCCCCCCccccCCCCCC-EEECCCCcCccccCccccCCCCCCCEEeccCC
Q 047486 191 SKNMLNGPIDLFQLPNSLQ---DVRLEEN-EIRGTIPNSTFQLVNLT-ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNN 265 (776)
Q Consensus 191 ~~n~l~~~~~~~~~~~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n 265 (776)
++|.+++..+ +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.+. .++...|.. ++|++|++++|
T Consensus 113 ~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 113 FNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCC
Confidence 6655554222 32224444 4555554 44433334444555555 5555555554 444333333 44444444444
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=6.3e-22 Score=208.62 Aligned_cols=234 Identities=18% Similarity=0.187 Sum_probs=157.7
Q ss_pred CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCccc-CCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT-IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL 451 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 451 (776)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..++ +|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 3445555555555554444 44567778888887777644 555555554 68888888887777777777778888888
Q ss_pred EcCCC-cCcCC-CChhhhcCCCCcEEEcCCC-ccCcc-cchhhcCCC-CcCEEEccCCc--cc-ccCCCCCCCcCCCCcc
Q 047486 452 DLNSN-KLEGP-LPRSLAKCIKLEVVNVGKN-MISDS-FPCWLGSLH-ELKILVLRSNR--FY-GPLCNSNITFPFQALR 523 (776)
Q Consensus 452 ~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~l~~L~ 523 (776)
++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.++.. ...+++|+
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~L~ 225 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLV 225 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCS
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH--HhhCCCCC
Confidence 88887 56642 5566777888888888888 77754 566677777 88888888873 43 222221 23567788
Q ss_pred EEeCCCCc-CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc-ccccch
Q 047486 524 IIDLSHNE-FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR-FHGEIP 601 (776)
Q Consensus 524 ~LdLs~n~-l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p 601 (776)
.|++++|. +++..+..+ ..++.|+.|++++|. ++....
T Consensus 226 ~L~l~~~~~l~~~~~~~l----------------------------------------~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEF----------------------------------------FQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp EEECTTCTTCCGGGGGGG----------------------------------------GGCTTCCEEECTTCTTCCGGGG
T ss_pred EEeCCCCCcCCHHHHHHH----------------------------------------hCCCCCCEeeCCCCCCCCHHHH
Confidence 88888887 554333221 114678888888885 333333
Q ss_pred hhhccCCCCCEEeCCCCcCcccCCcccccc-CCCcEEeccCccCcCCCchhhcc
Q 047486 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLDGRIPEQLLS 654 (776)
Q Consensus 602 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 654 (776)
..++.+++|+.|++++| ++. ..+..+ ..++.|++++|++++..|..++.
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 46888999999999999 432 344444 34777789999999999987665
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=6.3e-20 Score=184.17 Aligned_cols=158 Identities=22% Similarity=0.188 Sum_probs=77.1
Q ss_pred CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486 32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD 111 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~ 111 (776)
+++++|+|++|.+.+..+..+..+ ++|++|+|++|.+++..+..+.++++|++|++++| .+.+..+.. +..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGV-----FDHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT-----TTTCT
T ss_pred CCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhH-----hcccC
Confidence 345555555555555544445555 55555555555555444444555555555555555 444322222 23333
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 35555555555554433344455555555555555554444444555555555555555554444444444445555544
Q ss_pred CCcCC
Q 047486 192 KNMLN 196 (776)
Q Consensus 192 ~n~l~ 196 (776)
+|.+.
T Consensus 188 ~N~~~ 192 (251)
T 3m19_A 188 GNQFD 192 (251)
T ss_dssp SCCBC
T ss_pred CCcee
Confidence 44443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.5e-19 Score=179.78 Aligned_cols=178 Identities=21% Similarity=0.236 Sum_probs=139.1
Q ss_pred CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcC
Q 047486 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 434 (776)
Q Consensus 355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 434 (776)
++++++++.++.......+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcc
Confidence 4455555555433333345677778888888777777888888888888888888865555566555 788888888888
Q ss_pred CccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC
Q 047486 435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN 514 (776)
Q Consensus 435 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 514 (776)
++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+...
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 88888888888889999999998887777778888899999999998888777788888899999999998886555433
Q ss_pred CCcCCCCccEEeCCCCcCCCC
Q 047486 515 ITFPFQALRIIDLSHNEFTGF 535 (776)
Q Consensus 515 ~~~~l~~L~~LdLs~n~l~~~ 535 (776)
..+++|+.|++++|++.+.
T Consensus 176 --~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 --DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTCTTCCEEECCSCCBCTT
T ss_pred --hCCCCCCEEEeeCCceeCC
Confidence 5678899999999988754
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.3e-20 Score=189.03 Aligned_cols=194 Identities=20% Similarity=0.294 Sum_probs=157.2
Q ss_pred hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486 28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL 107 (776)
Q Consensus 28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l 107 (776)
...+++|++|++++|.+... + .+..+ ++|++|++++|.+.+..+ +..+++|++|++++| .+.+ ++ . +
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~-~~-~-----~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKN-VS-A-----I 103 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSC-CG-G-----G
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCC-ch-h-----h
Confidence 34678899999999988775 3 57778 899999999998885433 888999999999998 6664 23 2 6
Q ss_pred ccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486 108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS 187 (776)
Q Consensus 108 ~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 187 (776)
..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++
T Consensus 104 ~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp TTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 6677799999999998863 3 38889999999999999886543 8889999999999999885 343 888999999
Q ss_pred EEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486 188 IDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243 (776)
Q Consensus 188 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 243 (776)
|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|++++|.++
T Consensus 178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 9999999887655 444489999999999998554 3888999999999999987
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.8e-19 Score=199.99 Aligned_cols=67 Identities=27% Similarity=0.334 Sum_probs=42.3
Q ss_pred eeEEecCCCcccccchhhhccCCCC-------CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccc
Q 047486 586 FRAMDFSRNRFHGEIPEVLGNFKSL-------KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 657 (776)
Q Consensus 586 L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 657 (776)
|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 182 L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 182 LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 445555555555 3333 332 44 77777777777 46777777777777777777777777777766544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.3e-19 Score=189.58 Aligned_cols=153 Identities=15% Similarity=0.063 Sum_probs=83.8
Q ss_pred CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCcc-EEECCCCc
Q 047486 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI-TLHLKNNS 433 (776)
Q Consensus 355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~-~L~L~~n~ 433 (776)
++++.++++++.....-++++++|++++|+++...+.+|.++++|++|+|++|++.+.+|...+...+++. .+.+++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 45666766666432223456677777777776555556666777777777777665455543322222333 34455566
Q ss_pred CCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC-CccCcccchhhcCCC-CcCEEEccCCccc
Q 047486 434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK-NMISDSFPCWLGSLH-ELKILVLRSNRFY 507 (776)
Q Consensus 434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 507 (776)
++++.+..|..+++|++|++++|++++..+..+....++..+++.+ +++....+.+|..+. .+++|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 6666666666666666666666666655555555555555555543 344443333444332 3444444444443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=5.2e-19 Score=186.84 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=175.1
Q ss_pred cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCc-hhhhcCCCccEEECCCCcCCccC-cccccCCCCccE-EE
Q 047486 376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHI-HDTFANASHLRS-LD 452 (776)
Q Consensus 376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~ 452 (776)
++++.++++++ .+|..+ .+++++|+|++|+++ .+|+ .|..+. +|++|+|++|.+.+.+ +.+|.+++++++ +.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56778888887 566655 367899999999998 6665 455554 7999999999986644 467888888765 66
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCC-cccccCCCCCCCcCCCCccEEeCCCCc
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSN-RFYGPLCNSNITFPFQALRIIDLSHNE 531 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~LdLs~n~ 531 (776)
++.|+++...|..|..+++|++|++++|++....+..+....++..+++.++ ++.. ++..........++.|++++|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccc
Confidence 6778998888888999999999999999998877777777778888888764 4443 3332211223468889999999
Q ss_pred CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCC-CcccccchhhhccCCCC
Q 047486 532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSR-NRFHGEIPEVLGNFKSL 610 (776)
Q Consensus 532 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L 610 (776)
++ .+|...|. ...++.+++++ |.++...+..|+.+++|
T Consensus 166 i~-~i~~~~f~----------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 166 IQ-EIHNSAFN----------------------------------------GTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp CC-EECTTSST----------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred cc-CCChhhcc----------------------------------------ccchhHHhhccCCcccCCCHHHhccCccc
Confidence 87 45544332 34678888875 55554444568999999
Q ss_pred CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcc
Q 047486 611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668 (776)
Q Consensus 611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 668 (776)
++|||++|+|+...+..| .+|+.|.+.++.-...+| .+..+++|+.++++++.-
T Consensus 205 ~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 205 VILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp SEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred chhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 999999999985544444 455666655554444667 478888899999887643
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3e-19 Score=198.22 Aligned_cols=182 Identities=26% Similarity=0.356 Sum_probs=118.4
Q ss_pred ccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccC
Q 047486 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503 (776)
Q Consensus 424 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 503 (776)
++.|++++|.+++ +|..+ .++|+.|+|++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 4444444444443 22222 134555555555544 233 234555555555555554 333 332 556666666
Q ss_pred CcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhh
Q 047486 504 NRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL 583 (776)
Q Consensus 504 n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (776)
|++++ +|. .+++|+.|++++|.+++ +|.. +
T Consensus 130 N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~~-------------------------------------------l 159 (571)
T 3cvr_A 130 NQLTM-LPE-----LPALLEYINADNNQLTM-LPEL-------------------------------------------P 159 (571)
T ss_dssp SCCSC-CCC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------------C
T ss_pred CcCCC-CCC-----cCccccEEeCCCCccCc-CCCc-------------------------------------------C
Confidence 66555 232 25667777777777764 4431 3
Q ss_pred cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCC-------cEEeccCccCcCCCchhhcccc
Q 047486 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL-------ESLDLSFNKLDGRIPEQLLSVT 656 (776)
Q Consensus 584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~ 656 (776)
+.|+.|+|++|.+++ +|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 567888888888887 666 65 89999999999999 6776 665 77 99999999999 6888888899
Q ss_pred ccccccCccCcceecCCCC
Q 047486 657 ALALLNLSYNRLWGRIPRG 675 (776)
Q Consensus 657 ~L~~L~ls~N~l~g~iP~~ 675 (776)
+|+.|+|++|+++|.+|..
T Consensus 231 ~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp TTEEEECCSSSCCHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHH
Confidence 9999999999999988753
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=169.93 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=11.0
Q ss_pred CCCEEeCCCCcCcccCCccccccC
Q 047486 609 SLKVLNLSHNSLTGNIPVSFENMT 632 (776)
Q Consensus 609 ~L~~L~Ls~N~l~~~~p~~~~~l~ 632 (776)
+|+.|+++.|+++|.+|..++.++
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CHHHHHHHHHhCCceeeccCcccc
Confidence 344444444444444444444433
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.1e-18 Score=169.82 Aligned_cols=174 Identities=21% Similarity=0.252 Sum_probs=141.6
Q ss_pred EEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCch-hhhcCCCccEEECCCCcC
Q 047486 356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPC-LGNFSTELITLHLKNNSL 434 (776)
Q Consensus 356 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l 434 (776)
.++++++.++.......+++++|++++|.+.+..+..+..+++|++|++++|++. .+|.. +..+. +|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT-SLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCC-CcCEEECCCCcC
Confidence 4444555444433334567778888888888777777888999999999999998 45544 44554 799999999999
Q ss_pred CccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC
Q 047486 435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN 514 (776)
Q Consensus 435 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 514 (776)
++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 98888888999999999999999998888888999999999999999998888788999999999999998763
Q ss_pred CCcCCCCccEEeCCCCcCCCCCCccc
Q 047486 515 ITFPFQALRIIDLSHNEFTGFLPRRI 540 (776)
Q Consensus 515 ~~~~l~~L~~LdLs~n~l~~~~p~~~ 540 (776)
.++.|+.|+++.|+++|.+|..+
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccC
Confidence 45678999999999999998653
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.1e-18 Score=180.68 Aligned_cols=177 Identities=23% Similarity=0.236 Sum_probs=121.5
Q ss_pred CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCccccc-CCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486 400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA-NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478 (776)
Q Consensus 400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 478 (776)
+.++++++.+. .+|..+. ..++.|+|++|.|++..+..|. .+++|+.|+|++|++++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56788888777 6776543 3578888888888877777777 78888888888888887777778888888888888
Q ss_pred CCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceec
Q 047486 479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 558 (776)
Q Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~ 558 (776)
+|+++...+..|..+++|++|+|++|++.+..+..+ ..+++|+.|+|++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~------------------------- 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS------------------------- 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-------------------------
Confidence 888877766677777777777777776655433322 33444444444444443
Q ss_pred ccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhh---ccCCCCCEEeCCCCcCcccCCccccccCC--
Q 047486 559 MGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVL---GNFKSLKVLNLSHNSLTGNIPVSFENMTA-- 633 (776)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-- 633 (776)
+..+..| ..+++|+.|+|++|+|++..+..|..++.
T Consensus 150 ---------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 150 ---------------------------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp ---------------------------------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred ---------------------------------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 2222222 45778888888888888666667777766
Q ss_pred CcEEeccCccCcC
Q 047486 634 LESLDLSFNKLDG 646 (776)
Q Consensus 634 L~~L~Ls~N~l~~ 646 (776)
++.|+|++|.+..
T Consensus 191 l~~l~l~~N~~~C 203 (361)
T 2xot_A 191 KNGLYLHNNPLEC 203 (361)
T ss_dssp HTTEECCSSCEEC
T ss_pred cceEEecCCCccC
Confidence 3778888888764
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=9.5e-18 Score=171.89 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=53.2
Q ss_pred hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccccccccc
Q 047486 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 662 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 662 (776)
++.|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 34556666666666654 456667777777777777765444 6667777777777777764 33 366677777777
Q ss_pred CccCccee
Q 047486 663 LSYNRLWG 670 (776)
Q Consensus 663 ls~N~l~g 670 (776)
+++|+++.
T Consensus 207 l~~n~i~~ 214 (291)
T 1h6t_A 207 LFSQECLN 214 (291)
T ss_dssp EEEEEEEC
T ss_pred CcCCcccC
Confidence 77777654
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.4e-17 Score=168.94 Aligned_cols=173 Identities=23% Similarity=0.316 Sum_probs=139.2
Q ss_pred hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486 28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL 107 (776)
Q Consensus 28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l 107 (776)
+..+++|++|++++|.+... + .+..+ ++|++|++++|.+++..+ +.++++|++|++++| .+.+ +|. +
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~-~~~------l 108 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKD-LSS------L 108 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCC-GGG------G
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCC-Chh------h
Confidence 35678889999999888776 3 47777 899999999998885444 888899999999998 7664 232 5
Q ss_pred ccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486 108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS 187 (776)
Q Consensus 108 ~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 187 (776)
..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++
T Consensus 109 ~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 6667799999999998863 4688899999999999998865 578899999999999999886544 888999999
Q ss_pred EEccCCcCCCcCCCCCCCCCCcEEEccCCcCCC
Q 047486 188 IDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRG 220 (776)
Q Consensus 188 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~ 220 (776)
|++++|.+++... +..+++|+.|++++|.++.
T Consensus 183 L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 9999998887543 5455899999999998874
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=6.2e-17 Score=158.38 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCEEEccCCcCcccCCch-hhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486 399 LQYLSLSDNNLSGTIPPC-LGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477 (776)
Q Consensus 399 L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 477 (776)
+++|++++|++++..|.. +..+. +|++|++++|.++++.+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 344455555444332222 22222 4555555555555444445555555555555555555555555555555555555
Q ss_pred CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCC
Q 047486 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP 537 (776)
Q Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p 537 (776)
++|++++..|..|..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+.+..+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCc
Confidence 5555555555555555555555555555555444332 345555566666665554433
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=6.5e-17 Score=158.20 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 452 (776)
+.++.|++++|.+.+..+..|..+++|++|++++|++++..|..+..+. +|++|++++|.++++.+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 3455555555555555555555555666666666655544444444443 455555555555555445555555555555
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 506 (776)
|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555555555555555555555555555555555544455555555555555444
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.6e-17 Score=186.53 Aligned_cols=194 Identities=19% Similarity=0.243 Sum_probs=132.5
Q ss_pred CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477 (776)
Q Consensus 398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 477 (776)
.+..+.++.+.+.+..+ +..+. +|+.|++++|.+.... .+..+++|+.|+|++|.+++..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~-~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHT-TCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCC-CCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34455666666653333 33444 6888888888877542 47778888888888888876655 778888888888
Q ss_pred CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486 478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557 (776)
Q Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~ 557 (776)
++|.+.+. ..+..+++|+.|+|++|++.+. + .+..+++|+.|+|++|.+++. + .+.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l-~--~l~--------------- 150 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDI-T--VLS--------------- 150 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCC-G--GGG---------------
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCc-h--hhc---------------
Confidence 88888753 2577788888888888877653 1 135577777888877777642 1 111
Q ss_pred cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 637 (776)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 637 (776)
.++.|+.|+|++|.+++..| +..+++|+.|+|++|.+++. ..+..+++|+.|
T Consensus 151 ------------------------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L 202 (605)
T 1m9s_A 151 ------------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVL 202 (605)
T ss_dssp ------------------------SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEE
T ss_pred ------------------------ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEE
Confidence 14566777777777776655 77777777777777777753 357777777777
Q ss_pred eccCccCcCCCch
Q 047486 638 DLSFNKLDGRIPE 650 (776)
Q Consensus 638 ~Ls~N~l~~~~p~ 650 (776)
+|++|++++....
T Consensus 203 ~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 203 ELFSQECLNKPIN 215 (605)
T ss_dssp ECCSEEEECCCCC
T ss_pred EccCCcCcCCccc
Confidence 7777777754333
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=9.3e-17 Score=157.12 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=139.0
Q ss_pred cCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCC-ccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCC
Q 047486 354 ITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP-PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432 (776)
Q Consensus 354 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n 432 (776)
-+.+++++|.++.........+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+..+. +|++|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCC
Confidence 3689999999987544456778999999999998755 5688999999999999999965555676665 8999999999
Q ss_pred cCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccccc
Q 047486 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509 (776)
Q Consensus 433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 509 (776)
.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999753
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.1e-16 Score=157.70 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred EEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCc
Q 047486 588 AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649 (776)
Q Consensus 588 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 649 (776)
.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus 116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred eEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 3333333333 345556667777788888887776666677777788888888887776543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1e-16 Score=156.83 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=94.9
Q ss_pred CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486 35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114 (776)
Q Consensus 35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~ 114 (776)
+.++++++.+... |..+ +++|++|++++|.+++..+..|..+++|++|+|++| .+.+..|.. |..+++|+
T Consensus 14 ~~v~c~~~~l~~i-P~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~-----~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDA-----FQGLRSLN 83 (220)
T ss_dssp TEEECTTSCCSSC-CSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTT-----TTTCSSCC
T ss_pred CEEEcCCCCcCcC-CCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHH-----hhCCcCCC
Confidence 4566666665544 3322 256677777777766555556666667777777666 665554544 44444466
Q ss_pred EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCc
Q 047486 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNM 194 (776)
Q Consensus 115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 194 (776)
+|+|++|.++...+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|++++|.
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 66666666665444455666667777777666666666666666667777777766665555556666666666666665
Q ss_pred CC
Q 047486 195 LN 196 (776)
Q Consensus 195 l~ 196 (776)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.2e-16 Score=179.55 Aligned_cols=170 Identities=24% Similarity=0.302 Sum_probs=87.4
Q ss_pred CCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCC
Q 047486 4 LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL 83 (776)
Q Consensus 4 l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L 83 (776)
+++|++|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+ ++|++|+|++|.+.+ +| .+..+++|
T Consensus 42 L~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK----SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCC----CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred CCCCCEEECcCCCCC----CCh-HHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 445555555555552 222 24555555555555555555433 4555 555555555555542 22 45555555
Q ss_pred CEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCE
Q 047486 84 QILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTT 163 (776)
Q Consensus 84 ~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 163 (776)
++|+|++| .+.+ ++. +..+++|+.|+|++|.+++. ..++.+++|+.|+|++|.+++..| +..+++|++
T Consensus 112 ~~L~Ls~N-~l~~-l~~------l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHN-GISD-ING------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp CEEECTTS-CCCC-CGG------GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CEEEecCC-CCCC-Ccc------ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 55555555 4443 111 44444455555555555533 345555555555555555554433 555555555
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEEccCCcCCC
Q 047486 164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG 197 (776)
Q Consensus 164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 197 (776)
|+|++|.+++ + ..+..+++|+.|++++|.+.+
T Consensus 180 L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 180 LYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred EECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 5555555553 2 235555555555555555543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4e-16 Score=153.70 Aligned_cols=150 Identities=26% Similarity=0.330 Sum_probs=81.9
Q ss_pred CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchh-hhcCCCccEEECCCCc
Q 047486 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL-GNFSTELITLHLKNNS 433 (776)
Q Consensus 355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~~L~~L~L~~n~ 433 (776)
+.++++++.++.......++|++|++++|.+.+..|..|..+++|++|++++|++. .+|... ..+ ++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l-~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSL-TQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-TTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccC-CCcCEEECCCCc
Confidence 34444444443322223355556666666666555666666666666666666665 344332 333 256666666666
Q ss_pred CCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccc
Q 047486 434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY 507 (776)
Q Consensus 434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 507 (776)
+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66555555556666666666666665 44555555566666666666655554444555555555555555443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=168.57 Aligned_cols=156 Identities=23% Similarity=0.158 Sum_probs=74.2
Q ss_pred CcEEEccCCcCccCCCcccc-CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEc
Q 047486 375 TKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453 (776)
Q Consensus 375 L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 453 (776)
++.|++++|.+++..+..+. .+++|++|++++|++++..+..+..+. +|++|+|++|++++..+..|.++++|++|+|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 33444444444444444444 455555555555555433333333333 4555555555555444445555555555555
Q ss_pred CCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhh---cCCCCcCEEEccCCcccccCCCCCCCcCCCC--ccEEeCC
Q 047486 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL---GSLHELKILVLRSNRFYGPLCNSNITFPFQA--LRIIDLS 528 (776)
Q Consensus 454 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--L~~LdLs 528 (776)
++|++++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|++.+..+... ..++. ++.|+++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL--QKLPAWVKNGLYLH 197 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH--HHSCHHHHTTEECC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh--hhccHhhcceEEec
Confidence 5555555445555555555555555555554444333 345555555555555543221111 12232 3556666
Q ss_pred CCcCC
Q 047486 529 HNEFT 533 (776)
Q Consensus 529 ~n~l~ 533 (776)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 66655
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6.6e-17 Score=162.89 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=60.5
Q ss_pred CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEcc
Q 047486 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLR 502 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 502 (776)
++..+++++|.+++.. .+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3555666666665443 455666777777777776643 3 56667777777777777766544 6666777777777
Q ss_pred CCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486 503 SNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533 (776)
Q Consensus 503 ~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~ 533 (776)
+|++.+..+ . .. ++|+.|++++|.++
T Consensus 94 ~N~l~~l~~-~---~~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 94 RNRLKNLNG-I---PS-ACLSRLFLDNNELR 119 (263)
T ss_dssp SSCCSCCTT-C---CC-SSCCEEECCSSCCS
T ss_pred CCccCCcCc-c---cc-CcccEEEccCCccC
Confidence 666654221 1 11 55566666666555
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-16 Score=153.27 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=85.3
Q ss_pred hhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCccccccccccc
Q 047486 53 LNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG 132 (776)
Q Consensus 53 ~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~ 132 (776)
+.+ ++|++|++++|.+. .+| .+..+++|++|++++| .+.. +.. +..+++|++|++++|.+++..+..++
T Consensus 41 ~~l-~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~--~~~-----l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQM-NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATN--YNP-----ISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHH-HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSC--CGG-----GTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhc-CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCc--chh-----hhcCCCCCEEEeECCccCcccChhhc
Confidence 445 67777777777776 445 5667777777777777 4432 112 45555577777777777766666677
Q ss_pred CCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCc-CCCCCCccccCCCCCCEEEccCCcCCC
Q 047486 133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY-FQGGVPSWLFTLPSLLSIDLSKNMLNG 197 (776)
Q Consensus 133 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~ 197 (776)
.+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 77777777777777766666667777777777777776 44 344 46666666666666665543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.6e-17 Score=163.39 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=146.8
Q ss_pred CCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCcc
Q 047486 444 NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR 523 (776)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 523 (776)
.+.++..+++++|.+++.. .+..+++|+.|++++|.++.. + .+..+++|++|++++|++.+..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP----LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh----hccCCCCC
Confidence 3566888899999998654 688999999999999999864 4 68999999999999999988655 46789999
Q ss_pred EEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhh
Q 047486 524 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603 (776)
Q Consensus 524 ~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 603 (776)
.|++++|++++ +|... .+.|+.|++++|++++. +.
T Consensus 89 ~L~L~~N~l~~-l~~~~------------------------------------------~~~L~~L~L~~N~l~~~--~~ 123 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNGIP------------------------------------------SACLSRLFLDNNELRDT--DS 123 (263)
T ss_dssp EEECCSSCCSC-CTTCC------------------------------------------CSSCCEEECCSSCCSBS--GG
T ss_pred EEECCCCccCC-cCccc------------------------------------------cCcccEEEccCCccCCC--hh
Confidence 99999999985 33211 14679999999999974 36
Q ss_pred hccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceec
Q 047486 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR 671 (776)
Q Consensus 604 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 671 (776)
++.+++|+.|++++|++++. | .++.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999999999999999965 4 689999999999999999976 6789999999999999999865
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.5e-16 Score=152.85 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=130.2
Q ss_pred cCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcc
Q 047486 29 SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR 108 (776)
Q Consensus 29 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~ 108 (776)
..+++|++|++++|.+... | .+..+ ++|++|++++|.+. .+..+..+++|++|++++| .+.+..|.. +.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~~~-----l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGK-DVTSDKIPN-----LS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECT-TCBGGGSCC-----CT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECC-ccCcccChh-----hc
Confidence 5678999999999999854 4 68888 89999999999765 3347889999999999999 888766766 56
Q ss_pred cCCCCcEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486 109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS 187 (776)
Q Consensus 109 ~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 187 (776)
.+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 67779999999999998888999999999999999998 65 455 69999999999999999985 44 6889999999
Q ss_pred EEccCCcCCC
Q 047486 188 IDLSKNMLNG 197 (776)
Q Consensus 188 L~l~~n~l~~ 197 (776)
|++++|.+.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999998753
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6e-17 Score=154.83 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=69.2
Q ss_pred hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccccccccc
Q 047486 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 662 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 662 (776)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45567777777777777777777777788888888877777777777777788888888887777777777777777888
Q ss_pred CccCcceecCC
Q 047486 663 LSYNRLWGRIP 673 (776)
Q Consensus 663 ls~N~l~g~iP 673 (776)
+++|++.+..|
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 88887776554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.4e-18 Score=194.03 Aligned_cols=189 Identities=21% Similarity=0.260 Sum_probs=106.1
Q ss_pred cCCCCccEEeccCCCCCCcchhhhCCcccceEecccCc-------------cccccCCCcccCCccCCeEe-CcCccccc
Q 047486 280 YSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNR-------------IQGRISKSDSPGWKSLIDLD-LSNNFMTH 345 (776)
Q Consensus 280 ~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~-------------l~~~~~~~~~~~l~~L~~L~-l~~n~l~~ 345 (776)
+.+++|+.|++++|.++.+|..+..+++|+.|++++|. ..+..|.. +..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhcccc-
Confidence 35678888888888888888888888899998886664 22222222 24555666665 4444332
Q ss_pred cccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCcc
Q 047486 346 IELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI 425 (776)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~ 425 (776)
.|..+.+.+|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+. +|+
T Consensus 424 -------~L~~l~l~~n~i~~l~~---~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~ 489 (567)
T 1dce_A 424 -------DLRSKFLLENSVLKMEY---ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR-CLE 489 (567)
T ss_dssp -------HHHHHHHHHHHHHHHHH---TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT-TCC
T ss_pred -------hhhhhhhhcccccccCc---cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC-CCC
Confidence 22233333333322111 124555555555554 343 555566666666666655 5555555544 455
Q ss_pred EEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCC-ChhhhcCCCCcEEEcCCCccCccc
Q 047486 426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL-PRSLAKCIKLEVVNVGKNMISDSF 486 (776)
Q Consensus 426 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~ 486 (776)
.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 66665555554 23 4555555555555555555554 555555555555555555555443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.9e-18 Score=190.51 Aligned_cols=202 Identities=19% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCcc-------------CCCCChhhHhhccCCccEEE-cCCCC
Q 047486 3 HLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATN-------------MSLIKPFSLLNLSSTMTDLD-LGGTR 68 (776)
Q Consensus 3 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-------------~~~~~~~~~~~l~~~L~~L~-Ls~~~ 68 (776)
.+++|+.|+|++|.+ ..+|..++++++|+.|++++|. ..+..|..+..+ ++|+.|+ ++.|.
T Consensus 347 ~~~~L~~L~Ls~n~L----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~ 421 (567)
T 1dce_A 347 TDEQLFRCELSVEKS----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAY 421 (567)
T ss_dssp TTTTSSSCCCCHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHH
T ss_pred cCccceeccCChhhH----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhcc
Confidence 456677777777766 4567777777777777776654 444555566666 6666666 44332
Q ss_pred CCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCccc
Q 047486 69 IKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148 (776)
Q Consensus 69 l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 148 (776)
+. .|+.+.+++| .+....+ . .|++|++++|.+++ +|. ++.+++|++|++++|.++
T Consensus 422 ~~-----------~L~~l~l~~n-~i~~l~~-----~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 422 LD-----------DLRSKFLLEN-SVLKMEY-----A------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp HH-----------HHHHHHHHHH-HHHHHHH-----T------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred cc-----------hhhhhhhhcc-cccccCc-----c------CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 21 1111122222 1111000 0 14555555555553 343 555555555555555555
Q ss_pred CCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCc--CCCCCCCCCCcEEEccCCcCCCCCCc--
Q 047486 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP--IDLFQLPNSLQDVRLEENEIRGTIPN-- 224 (776)
Q Consensus 149 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~-- 224 (776)
.+|..|+++++|++|+|++|.+++ +| .++.+++|++|++++|.+++. +..+..+++|+.|++++|.+++..|.
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 445555555555555555555553 33 455555555555555555544 22333335555555555555543321
Q ss_pred -cccCCCCCCEEEC
Q 047486 225 -STFQLVNLTILDL 237 (776)
Q Consensus 225 -~~~~l~~L~~L~L 237 (776)
.+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 1233666776653
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=6.8e-17 Score=169.06 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=170.7
Q ss_pred CCCCCEEeCCCccCCCCChhhHhh-ccCCccEEEcCCCCCC--ccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486 31 LTKLSLLHLGATNMSLIKPFSLLN-LSSTMTDLDLGGTRIK--GNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL 107 (776)
Q Consensus 31 l~~L~~L~L~~~~~~~~~~~~~~~-l~~~L~~L~Ls~~~l~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l 107 (776)
+.+++.|.++++ +.......+.. + ++|++|||++|.+. ...+.. ++.++.+.+..| .+|.. .|
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l-~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~-----~I~~~----aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEF-PSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN-----FVPAY----AF 89 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSC-TTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT-----EECTT----TT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhh-ccCeEEecCcceeEEecCcccc---cccccccccccc-----ccCHH----Hh
Confidence 567788888754 22222233444 4 67888888888776 222222 222344444444 22322 24
Q ss_pred cc--------CCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCc----CCCCC
Q 047486 108 RE--------LDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY----FQGGV 175 (776)
Q Consensus 108 ~~--------L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~ 175 (776)
.+ +.+|+.|++.. .++...+.+|.+|++|+.+++++|.+....+.+|.++.++..+....+. .....
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 45 67777777777 6766666677777777777777777766666777777666666665532 22233
Q ss_pred CccccCCCCCC-EEEccCCcCCC-cC-CCCCCCCCCcEEEccCCcCCCCCCccc-cCCCCCCEEECCCCcCccccCcccc
Q 047486 176 PSWLFTLPSLL-SIDLSKNMLNG-PI-DLFQLPNSLQDVRLEENEIRGTIPNST-FQLVNLTILDLSSNNLSGAIRFDQF 251 (776)
Q Consensus 176 ~~~l~~l~~L~-~L~l~~n~l~~-~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~i~~~~~ 251 (776)
..+|.++..|+ .+.+....--. .. ...-.+.+++.+.+.++-.. .....+ ..+++|+.+++++|+++ .++...|
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF 246 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTF 246 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTT
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhh
Confidence 44555666666 44443221100 00 00011244555555443211 111111 13678888888888887 7777888
Q ss_pred CCCCCCCEEeccCCCCCccccccccccccCCCCcc-EEeccCCCCCCcc-hhhhCCcccceEecccCccccccCCCcccC
Q 047486 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLK-VLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPG 329 (776)
Q Consensus 252 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (776)
.+|++|+++++.+| ++.++..+ |..+++|+ .+++.+ .++.++ .+|.+|++|+.+++++|.++ .++...|.+
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~ 319 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGN 319 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCT
T ss_pred hCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcC
Confidence 88888888888887 66555433 66777787 888877 676676 47788888888888888877 677777788
Q ss_pred CccCCeEe
Q 047486 330 WKSLIDLD 337 (776)
Q Consensus 330 l~~L~~L~ 337 (776)
+++|+.++
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 88887765
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=6.3e-17 Score=186.62 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCCcEEEccCCcCccCCCccccCCCCCC-----EEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCC
Q 047486 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQ-----YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASH 447 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~-----~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 447 (776)
+.++.|++.+|.+... +..+.....|. .++++.|.+. ..|..+..+. .|+.|+|++|.+.. ++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~~-l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIFN-ISANIFKYDF 248 (727)
T ss_dssp ---------------------------------------------------CCC-CCCEEECTTSCCSC-CCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCC-CCcEEECCCCCCCC-CChhhcCCCC
Confidence 4567777777777643 32222222222 2222333332 3344444443 57777777777763 3434446677
Q ss_pred ccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeC
Q 047486 448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDL 527 (776)
Q Consensus 448 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdL 527 (776)
|++|+|++|.++ .+|..|.++++|++|+|++|+++ .+|..|..+++|++|+|++|.+. .+|.. +..+++|+.|+|
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~--~~~l~~L~~L~L 323 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE--FGNLCNLQFLGV 323 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS--TTSCTTCCCEEC
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh--hhcCCCccEEeC
Confidence 777777777776 56666777777777777777776 45666777777777777777665 34443 255666777777
Q ss_pred CCCcCCCCCCc
Q 047486 528 SHNEFTGFLPR 538 (776)
Q Consensus 528 s~n~l~~~~p~ 538 (776)
++|.+++.+|.
T Consensus 324 ~~N~l~~~~p~ 334 (727)
T 4b8c_D 324 EGNPLEKQFLK 334 (727)
T ss_dssp TTSCCCSHHHH
T ss_pred CCCccCCCChH
Confidence 77776655443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=7.3e-17 Score=186.09 Aligned_cols=216 Identities=19% Similarity=0.166 Sum_probs=101.0
Q ss_pred CCCCEEeCCCccCCCCChhhHhhccCCc-----cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCC
Q 047486 32 TKLSLLHLGATNMSLIKPFSLLNLSSTM-----TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSP 106 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L-----~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~ 106 (776)
++++.|+|.++.+... +..+... ..| ..++++.|.+. ..+..+..+++|+.|+|++| .+. .+|..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~-l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~----- 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQH-KKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIF-NISAN----- 242 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTS-CCS-CCCGG-----
T ss_pred CccceEEeeCCCCCcc-hhhHhhc-CccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCC-CCChh-----
Confidence 4566677776666553 2222111 122 22223333333 34667777888888888888 665 55654
Q ss_pred cccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCC
Q 047486 107 LRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLL 186 (776)
Q Consensus 107 l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 186 (776)
+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|+
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 335556888888888888 77778888888888888888888 66888888888888888888886 6677788888888
Q ss_pred EEEccCCcCCCcCCCC-CC-CCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCC--------cCccccCccccCCCCC
Q 047486 187 SIDLSKNMLNGPIDLF-QL-PNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN--------NLSGAIRFDQFSKLKK 256 (776)
Q Consensus 187 ~L~l~~n~l~~~~~~~-~~-~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~i~~~~~~~l~~ 256 (776)
+|+|++|.+++.++.. .. ...+..+++++|.+++.+|. .|+.|+++.| .+.+.. ...+..+..
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~-~~~~~~l~~ 392 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQST-EHLATDLAK 392 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccc-cchhhcccc
Confidence 8888888887654432 11 01122366788888777765 3455566655 222111 123445555
Q ss_pred CCEEeccCCCC
Q 047486 257 LQFLDLSNNSL 267 (776)
Q Consensus 257 L~~L~Ls~n~i 267 (776)
+....+++|-+
T Consensus 393 ~~~~~ls~Nil 403 (727)
T 4b8c_D 393 RTFTVLSYNTL 403 (727)
T ss_dssp ---------CC
T ss_pred cceeeeecccc
Confidence 56666777764
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=3e-14 Score=152.87 Aligned_cols=332 Identities=16% Similarity=0.138 Sum_probs=177.9
Q ss_pred cccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCC
Q 047486 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLP 205 (776)
Q Consensus 126 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 205 (776)
+...+|.+|++|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+-..-...+|..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence 33445666666666666533 44444556666666666666543 44344455666666666555443222222233332
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCc
Q 047486 206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL 285 (776)
Q Consensus 206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L 285 (776)
. +........ .......+|.++++|+.+.+.++. . .++...|.++++|+.+++..+ ++.+... .+..+..|
T Consensus 140 ~-~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~----~F~~~~~L 210 (394)
T 4fs7_A 140 D-FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDY----CFAECILL 210 (394)
T ss_dssp C-CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTT----TTTTCTTC
T ss_pred c-ccccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCch----hhcccccc
Confidence 2 222222111 111233456666777777775543 2 455566677777777666554 3223222 23445555
Q ss_pred cEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccC
Q 047486 286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ 365 (776)
Q Consensus 286 ~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 365 (776)
+.+.+..+.. .+.+.......|+.+.+.... . .+....|.++..++.+.+..+.. .+ .
T Consensus 211 ~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~-~i------------------~ 268 (394)
T 4fs7_A 211 ENMEFPNSLY-YLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKL-RI------------------G 268 (394)
T ss_dssp CBCCCCTTCC-EECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTC-EE------------------C
T ss_pred ceeecCCCce-EeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcc-ee------------------e
Confidence 5555544322 122323334555655554332 1 34444445555565555544321 11 1
Q ss_pred CCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCC
Q 047486 366 GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 445 (776)
Q Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 445 (776)
...+..+..++.+......+ ....|..+.+|+.+.+.++ +. .+++..+..+.+|+.+++.++ ++.+...+|.+|
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred ccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 22233344444444444332 2345666777777777654 43 444443333346888887643 666667788888
Q ss_pred CCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEE
Q 047486 446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL 499 (776)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 499 (776)
.+|+.+++..+ ++.+...+|.+|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88888888776 66666778888888888888654 22 234568888887764
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=9.9e-16 Score=160.20 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=61.0
Q ss_pred hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCc-EEeccCccCcCCCchhhccccccccc
Q 047486 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE-SLDLSFNKLDGRIPEQLLSVTALALL 661 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 661 (776)
++.|+.++|++|+++...+.+|.+|++|+.|+|++| ++.+.+.+|.++++|+ .+++.+ .++.+-+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567777777777777666666777777777777776 6656666777777777 777777 6665666677777777777
Q ss_pred cCccCcce
Q 047486 662 NLSYNRLW 669 (776)
Q Consensus 662 ~ls~N~l~ 669 (776)
++++|.+.
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 77777765
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=1.5e-15 Score=145.08 Aligned_cols=131 Identities=26% Similarity=0.304 Sum_probs=89.5
Q ss_pred cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCE
Q 047486 60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATE 139 (776)
Q Consensus 60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 139 (776)
++++++++.++ .+|..+.. +|++|++++| .+.+..+... +..+++|++|++++|.+++..|..|.++++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDN-ELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSC-CCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCC-cCCccCCccc----cccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 56677777664 55655443 6777777777 5554433211 455555777777777777666777777777777
Q ss_pred EEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCc
Q 047486 140 IAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP 198 (776)
Q Consensus 140 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 198 (776)
|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777777776666677777777777777777777777777777777777777776653
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=4.6e-15 Score=138.58 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=82.0
Q ss_pred CCccEEEcCCCCCC-ccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCC
Q 047486 57 STMTDLDLGGTRIK-GNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLT 135 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~ 135 (776)
++|++|++++|.+. +.+|..+..+++|++|++++| .+.+. .. +..+++|++|++++|.+++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SN-----LPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SS-----CCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hh-----hccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 55666666666665 555665666666666666666 55432 12 44455566666666666655666666667
Q ss_pred CCCEEEccCCcccCCC-chhhcCCCCCCEEEccCCcCCCCCC---ccccCCCCCCEEEccCCcCCC
Q 047486 136 RATEIAFASNHFTGQL-PHHVSGLSYLTTFDLSGNYFQGGVP---SWLFTLPSLLSIDLSKNMLNG 197 (776)
Q Consensus 136 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~ 197 (776)
+|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7777777777666431 2566667777777777777664443 356666677777766666543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.9e-15 Score=135.31 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=100.1
Q ss_pred CCccEEEcCCCCCC-ccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCC
Q 047486 57 STMTDLDLGGTRIK-GNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLT 135 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~ 135 (776)
++|++|++++|.+. +.+|..+..+++|++|++++| .+.+. .. +..+++|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--AN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TT-----CCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hh-----hhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 67888888888887 677877788888888888888 66654 22 55666688888888888876777777888
Q ss_pred CCCEEEccCCcccCC-CchhhcCCCCCCEEEccCCcCCCCCC---ccccCCCCCCEEEccC
Q 047486 136 RATEIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGNYFQGGVP---SWLFTLPSLLSIDLSK 192 (776)
Q Consensus 136 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~ 192 (776)
+|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888888888763 34778888888888888888886555 4678888888888763
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.6e-13 Score=146.44 Aligned_cols=229 Identities=13% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccce
Q 047486 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYL 310 (776)
Q Consensus 231 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~ 310 (776)
+|+.+.+..+ +. .++..+|.++ +|+.+.+.. .++.+... .|..+++|+.+++.+|.++.++.....+.+|+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHH----HhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 3444444433 33 3444444442 355555443 33322222 233444555555555555545432222456666
Q ss_pred EecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCC
Q 047486 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP 390 (776)
Q Consensus 311 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (776)
+.+..+ +. .++...|.++++|+.+++..+ ++.+....|.+ .+|+.+.+ .+.+.....
T Consensus 208 l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-------------------~~L~~i~l-p~~i~~I~~ 264 (401)
T 4fdw_A 208 VLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-------------------SGITTVKL-PNGVTNIAS 264 (401)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-------------------CCCSEEEE-ETTCCEECT
T ss_pred EEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-------------------CCccEEEe-CCCccEECh
Confidence 666533 33 455555666666666666543 33333332211 23344444 233444455
Q ss_pred ccccCCCCCCEEEccCCcCc----ccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhh
Q 047486 391 PSICSLSSLQYLSLSDNNLS----GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL 466 (776)
Q Consensus 391 ~~~~~~~~L~~L~Ls~n~l~----~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 466 (776)
.+|.+|++|+.+++.+|.+. ..++...+..+++|+.+++. +.++.+...+|.+|.+|+.+.|..+ ++.+.+.+|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 66777777777777666543 01222222222345555554 2244444445555555555555333 333444445
Q ss_pred hcCCCCcEEEcCCCccCcccchhhcCC
Q 047486 467 AKCIKLEVVNVGKNMISDSFPCWLGSL 493 (776)
Q Consensus 467 ~~l~~L~~L~L~~n~l~~~~~~~~~~l 493 (776)
.+| +|+.+++.+|.+....+..|.++
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CCC-CCCEEEEcCCCCcccccccccCC
Confidence 555 55555555554444433444433
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=8.2e-15 Score=136.82 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=46.4
Q ss_pred CcEEEccCCccc-ccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486 113 LSVLDIGFCNFT-GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191 (776)
Q Consensus 113 L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 191 (776)
|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 555555555555 44555555556666666666655543 455556666666666666654455555555555555555
Q ss_pred CCcCC
Q 047486 192 KNMLN 196 (776)
Q Consensus 192 ~n~l~ 196 (776)
+|.++
T Consensus 104 ~N~l~ 108 (168)
T 2ell_A 104 GNKLK 108 (168)
T ss_dssp SSSCC
T ss_pred CCccC
Confidence 55554
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=5.8e-13 Score=142.05 Aligned_cols=263 Identities=9% Similarity=0.061 Sum_probs=135.5
Q ss_pred CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486 57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR 136 (776)
Q Consensus 57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~ 136 (776)
..++.+.+.++ ++..-..+|.++ +|+.+.+..+ +...-... |.+. .|+.+++.. .++...+.+|.+|++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~a-----F~~~-~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMA-----FFNS-TVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTT-----TTTC-CCCEEECCT-TCCEECSSTTTTCTT
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHh-----cCCC-CceEEEeCC-CccEehHHHhhCccc
Confidence 45566666542 443344555554 5777766554 22111122 2221 266666664 455455556666777
Q ss_pred CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCC
Q 047486 137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN 216 (776)
Q Consensus 137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 216 (776)
|+.+++++|.++.....+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+--.-...+|.. .+|+.+.+. +
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-T
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-C
Confidence 77777766666654445554 466666666643 5545556666666666666665421112233433 556666663 3
Q ss_pred cCCCCCCccccCCCCCCEEECCCCcCc----cccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccC
Q 047486 217 EIRGTIPNSTFQLVNLTILDLSSNNLS----GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292 (776)
Q Consensus 217 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~ 292 (776)
.++.....+|.++++|+.+++.+|.+. ..++...|.+|++|+.+++.+ .++.++..+ |..+.+|+.+.+..
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a----F~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL----LGGNRKVTQLTIPA 332 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT----TTTCCSCCEEEECT
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh----hcCCCCccEEEECc
Confidence 344344555566666666666555432 124445566666666666652 344443322 44455555555533
Q ss_pred CCCCCcc-hhhhCCcccceEecccCccccccCCCcccCCc-cCCeEeCcCcc
Q 047486 293 CNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWK-SLIDLDLSNNF 342 (776)
Q Consensus 293 n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~ 342 (776)
+ ++.++ .+|.++ +|+.+++.+|.+. .++...|.+++ .++.|.+..+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence 2 44443 245555 5555555555544 33333344442 44455544443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=7e-14 Score=133.34 Aligned_cols=107 Identities=25% Similarity=0.343 Sum_probs=50.3
Q ss_pred CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477 (776)
Q Consensus 398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 477 (776)
+|++|++++|.++ .+|..+..+. +|++|++++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4445555555444 4444443333 4455555555544444444444455555555555554444444444444555555
Q ss_pred CCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486 478 GKNMISDSFPCWLGSLHELKILVLRSNRF 506 (776)
Q Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 506 (776)
++|+++...+..|..+++|+.|++++|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 44444444433444444444444444443
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.8e-14 Score=131.51 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=70.0
Q ss_pred CCCcEEEccCCcCc-cCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486 373 PSTKVLLVSNNKLS-GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL 451 (776)
Q Consensus 373 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 451 (776)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+. +|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44555555555555 45555556666666666666666532 3333333 46666666666655555555555566666
Q ss_pred EcCCCcCcCC-CChhhhcCCCCcEEEcCCCccCcccc---hhhcCCCCcCEEEcc
Q 047486 452 DLNSNKLEGP-LPRSLAKCIKLEVVNVGKNMISDSFP---CWLGSLHELKILVLR 502 (776)
Q Consensus 452 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 502 (776)
++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665543 23455555666666666665555444 345555555555543
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=7.4e-13 Score=142.02 Aligned_cols=235 Identities=17% Similarity=0.136 Sum_probs=144.3
Q ss_pred CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccC
Q 047486 202 FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS 281 (776)
Q Consensus 202 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 281 (776)
|..+.+|+.+.+.++. .......|..+.+|+.+.+..+ +. .+....|.++..|+.+.+..+... +. .....
T Consensus 158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~-i~-----~~~~~ 228 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY-LG-----DFALS 228 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE-EC-----TTTTT
T ss_pred hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE-ee-----hhhcc
Confidence 3344555555554432 2233445666777777777655 33 555567777777777776655321 11 11234
Q ss_pred CCCccEEeccCCCCCCcc-hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEecc
Q 047486 282 LPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLR 360 (776)
Q Consensus 282 l~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 360 (776)
...|+.+.+... ++.+. ..+..+..++.+.+..+.. .+....|..+..++.+......+..
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~--------------- 290 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPE--------------- 290 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEECT---------------
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeecc---------------
Confidence 556777766543 33343 3567788888888876643 3556666777777666555443322
Q ss_pred CcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcc
Q 047486 361 NNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD 440 (776)
Q Consensus 361 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 440 (776)
..+..+.+|+.+.+.++ +......+|.+|++|+.+++.++ ++ .+++..+..+.+|+.+++..+ ++.+...
T Consensus 291 ------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 291 ------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp ------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 22333445555555443 44455667888889999988754 54 554444444447999999776 7777788
Q ss_pred cccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEE
Q 047486 441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVV 475 (776)
Q Consensus 441 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 475 (776)
+|.+|.+|+.+++..+ ++ ....+|.+|++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999999999765 33 335678889888765
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=131.74 Aligned_cols=127 Identities=23% Similarity=0.304 Sum_probs=72.2
Q ss_pred cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCE
Q 047486 60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATE 139 (776)
Q Consensus 60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 139 (776)
++++++++.++ .+|..+. ++|++|++++| .+. .+|.. +..+++|++|++++|.+++..+..|.++++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n-~i~-~ip~~-----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGN-QFT-LVPKE-----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSS-CCC-SCCGG-----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCC-cCc-hhHHH-----hhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 45566666555 4444332 35566666665 444 33432 444444666666666666555555666666666
Q ss_pred EEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCC
Q 047486 140 IAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLN 196 (776)
Q Consensus 140 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 196 (776)
|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666666555556666666666666666666444445556666666666665543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.4e-13 Score=129.63 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=100.0
Q ss_pred CCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478 (776)
Q Consensus 399 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 478 (776)
.+.++++++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456777777776 5664432 368888888888877777777888888888888888887777777888888888888
Q ss_pred CCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCC
Q 047486 479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP 537 (776)
Q Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p 537 (776)
+|++++..+..+..+++|++|++++|++.+..+.. +..+++|+.|++++|.+.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHH--hcCCcccCEEEecCCCeeccCc
Confidence 88888777777788888888888888887544332 2567888888888888876544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=3.3e-13 Score=127.07 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=54.5
Q ss_pred CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452 (776)
Q Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 452 (776)
++++.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..|..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3444455555555444444455555555555555555522222222332 455555555555544444455555555555
Q ss_pred cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcc
Q 047486 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDS 485 (776)
Q Consensus 453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 485 (776)
+++|++++..+..+..+++|+.|++++|++.+.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 555555544444444455555555555555443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.2e-13 Score=128.72 Aligned_cols=90 Identities=21% Similarity=0.189 Sum_probs=83.4
Q ss_pred cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccC
Q 047486 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 663 (776)
Q Consensus 584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 663 (776)
+.++.|+|++|++++..|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 46789999999999999999999999999999999999888888999999999999999999888888999999999999
Q ss_pred ccCcceecCC
Q 047486 664 SYNRLWGRIP 673 (776)
Q Consensus 664 s~N~l~g~iP 673 (776)
++|++.+..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999986544
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=4.4e-13 Score=125.32 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=81.0
Q ss_pred cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccC
Q 047486 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 663 (776)
Q Consensus 584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 663 (776)
+.++.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|.++++|++|||++|++++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 46789999999999999999999999999999999999877777899999999999999999877777999999999999
Q ss_pred ccCcceec
Q 047486 664 SYNRLWGR 671 (776)
Q Consensus 664 s~N~l~g~ 671 (776)
++|++.+.
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 99999754
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=3.4e-15 Score=143.58 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=58.7
Q ss_pred hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCC-ccccccCCCcEEeccCccCcCCCchh----------
Q 047486 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQ---------- 651 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~---------- 651 (776)
++.|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 4566777777777775 34 57777888888888888875332 46777888888888888887665542
Q ss_pred hccccccccccCccCcce
Q 047486 652 LLSVTALALLNLSYNRLW 669 (776)
Q Consensus 652 l~~l~~L~~L~ls~N~l~ 669 (776)
+..+++|++|| +|+++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67777777776 55554
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3.9e-13 Score=126.33 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=103.3
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCC
Q 047486 392 SICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471 (776)
Q Consensus 392 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 471 (776)
.+.++++|++|++++|.+. .+|. +....++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4566778888888888887 5554 445544788888888888875 67888888999999999888766666788889
Q ss_pred CcEEEcCCCccCcccch--hhcCCCCcCEEEccCCcccccCCCC--CCCcCCCCccEEeCCCCcCC
Q 047486 472 LEVVNVGKNMISDSFPC--WLGSLHELKILVLRSNRFYGPLCNS--NITFPFQALRIIDLSHNEFT 533 (776)
Q Consensus 472 L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~LdLs~n~l~ 533 (776)
|++|++++|+++. +|. .+..+++|++|++++|++... +.. .....+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999988864 444 778888899999998888643 221 01356788889988888764
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4e-13 Score=126.26 Aligned_cols=107 Identities=23% Similarity=0.253 Sum_probs=57.6
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCcc
Q 047486 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLK 286 (776)
Q Consensus 207 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~ 286 (776)
+|++|++++|.+++. ..+..+++|++|++++|.++ .++...+..+++|++|++++|.+..++.. ..+..+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDL---DPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGG---GGGGGCTTCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhh---HhhhcCCCCC
Confidence 344444444444322 34455566666666666665 34434445566666666666665444331 1223455566
Q ss_pred EEeccCCCCCCcchh----hhCCcccceEecccCccc
Q 047486 287 VLRFAYCNITEFPGF----LRNSEELYLLDLSNNRIQ 319 (776)
Q Consensus 287 ~L~l~~n~l~~lp~~----l~~~~~L~~L~L~~n~l~ 319 (776)
+|++++|.++.+|.. +..+++|+.|++++|...
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666555543 666677777777666654
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=2.6e-11 Score=129.89 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=39.2
Q ss_pred CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEcc
Q 047486 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLR 502 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 502 (776)
+|+.+.+. +.++.+...+|.+|.+|+.++|.++ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 45555443 2333344445555555555555432 33334445555555555555432 444444555555555555555
Q ss_pred CCc
Q 047486 503 SNR 505 (776)
Q Consensus 503 ~n~ 505 (776)
++.
T Consensus 366 ~~~ 368 (394)
T 4gt6_A 366 GSR 368 (394)
T ss_dssp SCH
T ss_pred Cce
Confidence 543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3e-12 Score=119.25 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=75.1
Q ss_pred CCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478 (776)
Q Consensus 399 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 478 (776)
.+.+++++|.++ .+|..+. ++|++|++++|.|++..+..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777776 5665542 367777777777777777777777777777777777777666667777777777777
Q ss_pred CCccCcccchhhcCCCCcCEEEccCCccc
Q 047486 479 KNMISDSFPCWLGSLHELKILVLRSNRFY 507 (776)
Q Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 507 (776)
+|++++..+..|..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77777666666666666666666666654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=2.7e-14 Score=137.25 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=87.7
Q ss_pred hhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccCh
Q 047486 465 SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSM 544 (776)
Q Consensus 465 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l 544 (776)
.+..+++|++|++++|++++ +| .+..+++|++|++++|++.. +|.. ...+++|+.|++++|.+++ +| . +
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~~~L~~L~L~~N~l~~-l~-~-~--- 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENL--DAVADTLEELWISYNQIAS-LS-G-I--- 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSH--HHHHHHCSEEEEEEEECCC-HH-H-H---
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccch--hhcCCcCCEEECcCCcCCc-CC-c-c---
Confidence 55555555555555555554 33 45555555555555555542 2221 1234566777777777663 22 1 1
Q ss_pred HHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccch-hhhccCCCCCEEeCCCCcCccc
Q 047486 545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGN 623 (776)
Q Consensus 545 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ 623 (776)
..++.|+.|++++|++++..+ ..+..+++|+.|++++|.+++.
T Consensus 112 ------------------------------------~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 ------------------------------------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ------------------------------------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ------------------------------------ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 125678899999999986443 5789999999999999999887
Q ss_pred CCcc----------ccccCCCcEEeccCccCcC
Q 047486 624 IPVS----------FENMTALESLDLSFNKLDG 646 (776)
Q Consensus 624 ~p~~----------~~~l~~L~~L~Ls~N~l~~ 646 (776)
+|.. +..+++|+.|| +|.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7653 88899999998 677753
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1.2e-10 Score=124.78 Aligned_cols=330 Identities=10% Similarity=0.063 Sum_probs=171.1
Q ss_pred cccccccCCC-CCCEEEccCCcccCCCchhhcCCCCCCEEEccCCc---CCCCCCccccCCCCCCEEEccCCcCCCcCCC
Q 047486 126 SIPTSIGNLT-RATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY---FQGGVPSWLFTLPSLLSIDLSKNMLNGPIDL 201 (776)
Q Consensus 126 ~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 201 (776)
+...+|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++.....+|.++.+|+.+.+..+--.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~----- 127 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTE----- 127 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSE-----
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccce-----
Confidence 3344566663 4677776643 444555667777777777666543 44344455666666665555433211
Q ss_pred CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccC
Q 047486 202 FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS 281 (776)
Q Consensus 202 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 281 (776)
....+|..+.+|+.+.+..+ +. .+....|..+..|+.+.+..+ ++.+...+ + .
T Consensus 128 -------------------I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~a----F-~ 180 (394)
T 4gt6_A 128 -------------------IDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERA----F-T 180 (394)
T ss_dssp -------------------ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTT----T-T
T ss_pred -------------------ehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccc----c-c
Confidence 22233444555555555432 22 334445555555555555433 22222211 1 1
Q ss_pred CCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccC
Q 047486 282 LPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361 (776)
Q Consensus 282 l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 361 (776)
...|+.+.+..+...--..++..+..+........... .+....+........... .......+..+.+..
T Consensus 181 ~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ip~ 251 (394)
T 4gt6_A 181 GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALI--------RYPSQREDPAFKIPN 251 (394)
T ss_dssp TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEE--------ECCTTCCCSEEECCT
T ss_pred ccceeEEEECCcccccccchhhhccccceecccccccc-cccceeeccccccccccc--------ccccccccceEEcCC
Confidence 23344444433221111223444555554444333221 111111111000000000 000011122222221
Q ss_pred c--ccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCc
Q 047486 362 N--RIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH 439 (776)
Q Consensus 362 n--~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~ 439 (776)
. .+....+..+..|+.+.+.++.. .....+|.+++.|+.+.+.. .+. .+++..+..+.+|+.+++.++ ++.+..
T Consensus 252 ~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 252 GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred cceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 1 12233455567777777765543 35567788999999999964 455 566655555558999999864 777778
Q ss_pred ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486 440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505 (776)
Q Consensus 440 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 505 (776)
.+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 89999999999999765 77677789999999999999887643 2456677778777776554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=5.5e-12 Score=117.87 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=76.4
Q ss_pred CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486 400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK 479 (776)
Q Consensus 400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 479 (776)
+.+++++|.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57778877776 6776543 4688888888888877777787888888888888888776666677777788888887
Q ss_pred CccCcccchhhcCCCCcCEEEccCCccc
Q 047486 480 NMISDSFPCWLGSLHELKILVLRSNRFY 507 (776)
Q Consensus 480 n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 507 (776)
|++++..+..|..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777666656666666666666666654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=8.1e-13 Score=139.49 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=44.3
Q ss_pred CccEEECCCCcCCccCcccc-cCCCCccEEEcCCCcCcCCCChhh-----hcCCCCcEEEcCCCccCcc----cchhhcC
Q 047486 423 ELITLHLKNNSLEGHIHDTF-ANASHLRSLDLNSNKLEGPLPRSL-----AKCIKLEVVNVGKNMISDS----FPCWLGS 492 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~ 492 (776)
+|++|+|++|.++......+ ..+++|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 45555555555443221111 123455666666666554333222 2345667777777766542 3334456
Q ss_pred CCCcCEEEccCCccc
Q 047486 493 LHELKILVLRSNRFY 507 (776)
Q Consensus 493 l~~L~~L~L~~n~l~ 507 (776)
+++|++|+|++|.+.
T Consensus 182 ~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 182 NTSVTHLSLLHTGLG 196 (372)
T ss_dssp CSSCCEEECTTSSCH
T ss_pred CCCcCEEeCCCCCCC
Confidence 677777777777654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=7.5e-13 Score=139.75 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCCCEEeCCCccCCCCChhhHhhc----cCCccEEEcCCCCCCccCCCCCC-CCCCCCEEeccCCCCccccCCCCCCCCC
Q 047486 32 TKLSLLHLGATNMSLIKPFSLLNL----SSTMTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSP 106 (776)
Q Consensus 32 ~~L~~L~L~~~~~~~~~~~~~~~l----~~~L~~L~Ls~~~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~~~ 106 (776)
++|++|+|++|.++...+..+... +++|++|+|++|.+.......+. .+++|++|+|++| .+++.....+.. .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~-~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD-L 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH-H
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH-H
Confidence 456666666666655433333322 13566666666665433222221 2445666666666 554322111100 0
Q ss_pred c-ccCCCCcEEEccCCcccc----cccccccCCCCCCEEEccCCcccCC----CchhhcCCCCCCEEEccCCcCCCC---
Q 047486 107 L-RELDLLSVLDIGFCNFTG----SIPTSIGNLTRATEIAFASNHFTGQ----LPHHVSGLSYLTTFDLSGNYFQGG--- 174 (776)
Q Consensus 107 l-~~L~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--- 174 (776)
+ .....|++|+|++|.++. .++..+..+++|++|+|++|.++.. ++..+...++|++|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 0 112336777777776654 2333445667777777777776542 234555666777777777777642
Q ss_pred -CCccccCCCCCCEEEccCCcCCC
Q 047486 175 -VPSWLFTLPSLLSIDLSKNMLNG 197 (776)
Q Consensus 175 -~~~~l~~l~~L~~L~l~~n~l~~ 197 (776)
++.++...++|++|++++|.++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 23344456777777777777653
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=6e-11 Score=124.88 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=43.5
Q ss_pred EecCCC-cccccchhhhccCCCCCEEeCCC-CcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccC
Q 047486 589 MDFSRN-RFHGEIPEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 666 (776)
Q Consensus 589 L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 666 (776)
++++++ ++++ +|. +..+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 4542 444 55555555555553 5555555555555555555555555555555555555555555555555
Q ss_pred ccee
Q 047486 667 RLWG 670 (776)
Q Consensus 667 ~l~g 670 (776)
+|++
T Consensus 91 ~l~~ 94 (347)
T 2ifg_A 91 ALES 94 (347)
T ss_dssp CCSC
T ss_pred ccce
Confidence 5553
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=5.7e-09 Score=111.11 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=39.5
Q ss_pred CccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469 (776)
Q Consensus 390 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 469 (776)
..+|.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 344455555555555432 22 233322222234555555554454444455555555555555432 333334455555
Q ss_pred CCCcEEEcC
Q 047486 470 IKLEVVNVG 478 (776)
Q Consensus 470 ~~L~~L~L~ 478 (776)
++|+.+.+.
T Consensus 333 ~~L~~i~ip 341 (379)
T 4h09_A 333 KALSTISYP 341 (379)
T ss_dssp TTCCCCCCC
T ss_pred CCCCEEEEC
Confidence 555555543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=1.4e-08 Score=108.19 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=88.4
Q ss_pred hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEc
Q 047486 301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLV 380 (776)
Q Consensus 301 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 380 (776)
.+..+..|+.+.+..+ +. .+....|.++..|+.+.+..+ ++.+.. ..+..+..++.+.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~------------------~aF~~~~~l~~i~l 270 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGS------------------FLLQNCTALKTLNF 270 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECT------------------TTTTTCTTCCEEEE
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCc------------------cccceeehhccccc
Confidence 3444555555555433 22 344444455555555555433 332222 22333445555555
Q ss_pred cCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcC
Q 047486 381 SNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG 460 (776)
Q Consensus 381 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 460 (776)
..+ +......+|.+|++|+.+.+.++.+. .+++..+..+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred ccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 432 33345567788888888888887776 555544444447888888754 66677788999999999988765 665
Q ss_pred CCChhhhcCCCC
Q 047486 461 PLPRSLAKCIKL 472 (776)
Q Consensus 461 ~~~~~l~~l~~L 472 (776)
+...+|.+|..+
T Consensus 347 I~~~aF~~c~~~ 358 (379)
T 4h09_A 347 IESGAFEGSSIT 358 (379)
T ss_dssp ECTTTTTTSSCC
T ss_pred EchhHhhCCCCC
Confidence 666778777543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=5.2e-10 Score=117.65 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=44.5
Q ss_pred EEccCC-cCccCCCccccCCCCCCEEEccC-CcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCC
Q 047486 378 LLVSNN-KLSGKIPPSICSLSSLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS 455 (776)
Q Consensus 378 L~l~~n-~l~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 455 (776)
++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..+..+. +|+.|+|++|+|+++.+..|.++++|+.|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 344444 343 2333 44444444444443 444422223333332 444444444444444444444444444444444
Q ss_pred CcCcCCCChhhhcCCCCcEEEcCCCccC
Q 047486 456 NKLEGPLPRSLAKCIKLEVVNVGKNMIS 483 (776)
Q Consensus 456 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 483 (776)
|++++..+..|..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 444443333333333 444444444443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.3e-09 Score=111.92 Aligned_cols=83 Identities=12% Similarity=0.240 Sum_probs=50.0
Q ss_pred hcceeEEecCCCcccccchhhhc---cCCCCCEEeCCCCcCccc----CCccccccCCCcEEeccCccCcCCCchhhcc-
Q 047486 583 LVMFRAMDFSRNRFHGEIPEVLG---NFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQLLS- 654 (776)
Q Consensus 583 ~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 654 (776)
++.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45667777777776654443333 467788888888887753 3344456778888888888776433333332
Q ss_pred ccccccccCccCc
Q 047486 655 VTALALLNLSYNR 667 (776)
Q Consensus 655 l~~L~~L~ls~N~ 667 (776)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2345555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=1.1e-08 Score=106.74 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=98.5
Q ss_pred ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc--CCCCcCEEEccC--CcccccC-----
Q 047486 440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG--SLHELKILVLRS--NRFYGPL----- 510 (776)
Q Consensus 440 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~----- 510 (776)
..+..+++|+.|.|++|.-. .++. + .+++|+.|++..|.+.......+. .+++|+.|+|+. |...+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44556677777777666311 1222 2 267777777777776654444443 677788877753 2211110
Q ss_pred CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEe
Q 047486 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD 590 (776)
Q Consensus 511 ~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 590 (776)
........+++|+.|++++|.+++..+..++.. ..++.|+.|+
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-------------------------------------~~~~~L~~Ld 285 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-------------------------------------DILPQLETMD 285 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-------------------------------------SSGGGCSEEE
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-------------------------------------ccCCCCCEEE
Confidence 001111346889999998888764322111100 0157889999
Q ss_pred cCCCccccc----chhhhccCCCCCEEeCCCCcCcccCCccccc-cCCCcEEeccCcc
Q 047486 591 FSRNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN-MTALESLDLSFNK 643 (776)
Q Consensus 591 Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~ 643 (776)
|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...+|++.++
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999999875 3444567899999999999988654444443 2 3568999887
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.6e-07 Score=92.72 Aligned_cols=67 Identities=30% Similarity=0.315 Sum_probs=43.9
Q ss_pred ccCCCCCEEeCCCCcCcc--cCCccccccCCCcEEeccCccCcCCCchhhcccc--ccccccCccCcceecCC
Q 047486 605 GNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT--ALALLNLSYNRLWGRIP 673 (776)
Q Consensus 605 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~g~iP 673 (776)
.++++|+.|+|++|+|++ .+|..+..+++|+.|||++|++++. +.+..+. .|+.|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456777777777777776 3455666777777777777777654 2333443 67777777777776655
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=5.5e-07 Score=88.86 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=67.0
Q ss_pred HhhcceeEEecCCCcccc--cchhhhccCCCCCEEeCCCCcCcccCCccccccC--CCcEEeccCccCcCCCch------
Q 047486 581 KILVMFRAMDFSRNRFHG--EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT--ALESLDLSFNKLDGRIPE------ 650 (776)
Q Consensus 581 ~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------ 650 (776)
..++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347899999999999998 5567888999999999999999975 3455555 999999999999987763
Q ss_pred -hhcccccccccc
Q 047486 651 -QLLSVTALALLN 662 (776)
Q Consensus 651 -~l~~l~~L~~L~ 662 (776)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 467788888876
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=2.9e-07 Score=86.47 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=44.4
Q ss_pred cccCCCCCCEEEccCC-cCccc----CCchhhhcCCCccEEECCCCcCCcc----CcccccCCCCccEEEcCCCcCcCC-
Q 047486 392 SICSLSSLQYLSLSDN-NLSGT----IPPCLGNFSTELITLHLKNNSLEGH----IHDTFANASHLRSLDLNSNKLEGP- 461 (776)
Q Consensus 392 ~~~~~~~L~~L~Ls~n-~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~- 461 (776)
.+...+.|++|+|++| .+... +...+... ++|++|+|++|.|... +...+...++|++|+|++|.|+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445566666666666 55432 11222222 2455566655555432 122333445555555555555432
Q ss_pred ---CChhhhcCCCCcEEEc--CCCccCc
Q 047486 462 ---LPRSLAKCIKLEVVNV--GKNMISD 484 (776)
Q Consensus 462 ---~~~~l~~l~~L~~L~L--~~n~l~~ 484 (776)
+...+...++|++|+| ++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2334444555555555 4555543
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=1.4e-07 Score=88.61 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=77.8
Q ss_pred hhHhhcCCCCCCEEeCCCc-cCCCCC----hhhHhhccCCccEEEcCCCCCCcc----CCCCCCCCCCCCEEeccCCCCc
Q 047486 24 FDLLASNLTKLSLLHLGAT-NMSLIK----PFSLLNLSSTMTDLDLGGTRIKGN----FPDDIFRLPNLQILFLNLNSQL 94 (776)
Q Consensus 24 ~~~~l~~l~~L~~L~L~~~-~~~~~~----~~~~~~l~~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~ 94 (776)
+...+...++|++|+|++| .+.... ...+... ++|++|+|++|.+... +...+...++|++|+|++| .+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 4456667788888888887 776542 2334444 6788888888877543 2334445677888888888 66
Q ss_pred cccCCCCCCCCCcccCCCCcEEEc--cCCccccc----ccccccCCCCCCEEEccCCccc
Q 047486 95 TGYLPKSNWSSPLRELDLLSVLDI--GFCNFTGS----IPTSIGNLTRATEIAFASNHFT 148 (776)
Q Consensus 95 ~~~~p~~~~~~~l~~L~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 148 (776)
.+.-...+. ..+...+.|++|+| ++|.+... +...+...+.|++|++++|.+.
T Consensus 106 ~~~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 543111110 11444555888888 77888754 3345556688999999888775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=4e-06 Score=76.44 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=57.5
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCchhhcCC----CCCCEEEccCCc-CCCCCCccccCCCCCC
Q 047486 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGL----SYLTTFDLSGNY-FQGGVPSWLFTLPSLL 186 (776)
Q Consensus 113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 186 (776)
|++||+++|.++...-..+..|++|++|+|++|. +++..-..++.+ ++|++|+|++|. +++.--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 7788888877776656667778888888888874 654444455554 368888888874 6654445566778888
Q ss_pred EEEccCCc
Q 047486 187 SIDLSKNM 194 (776)
Q Consensus 187 ~L~l~~n~ 194 (776)
+|++++|.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 88887774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=4.6e-06 Score=76.05 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=53.9
Q ss_pred CccEEECCCCcCCccCcccccCCCCccEEEcCCCc-CcCCCChhhhcC----CCCcEEEcCCCc-cCcccchhhcCCCCc
Q 047486 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK-LEGPLPRSLAKC----IKLEVVNVGKNM-ISDSFPCWLGSLHEL 496 (776)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 496 (776)
.|+.||+++|.|+...-..+..+++|+.|+|++|. +++..-..+..+ ++|+.|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47777777777665555556677777777777774 554333344443 467788887764 766555566667777
Q ss_pred CEEEccCCc
Q 047486 497 KILVLRSNR 505 (776)
Q Consensus 497 ~~L~L~~n~ 505 (776)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00035 Score=64.86 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCCCCEEEccCC-cCccc----CCchhhhcCCCccEEECCCCcCCcc----CcccccCCCCccEEEcCCCcCc
Q 047486 395 SLSSLQYLSLSDN-NLSGT----IPPCLGNFSTELITLHLKNNSLEGH----IHDTFANASHLRSLDLNSNKLE 459 (776)
Q Consensus 395 ~~~~L~~L~Ls~n-~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 459 (776)
+-+.|++|+|++| .+... +.+.+.... .|+.|+|++|.|... +...+..-+.|+.|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445555666553 44321 122222222 455555555555421 1222333344555555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00031 Score=65.24 Aligned_cols=120 Identities=14% Similarity=0.069 Sum_probs=60.8
Q ss_pred hHhhcCCCCCCEEeCCCc-cCCCC----ChhhHhhccCCccEEEcCCCCCCccCCCC----CCCCCCCCEEeccCCCCcc
Q 047486 25 DLLASNLTKLSLLHLGAT-NMSLI----KPFSLLNLSSTMTDLDLGGTRIKGNFPDD----IFRLPNLQILFLNLNSQLT 95 (776)
Q Consensus 25 ~~~l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~----l~~l~~L~~L~Ls~n~~~~ 95 (776)
...+.+-+.|++|+|+++ .+... +.+.+..- +.|++|+|++|.|......+ +..-+.|++|+|++| .+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 344455566666776664 55432 22333333 56677777776665432222 233456777777776 554
Q ss_pred ccCCCCCCCCCcccCCCCcEEEccCC---cccc----cccccccCCCCCCEEEccCCcc
Q 047486 96 GYLPKSNWSSPLRELDLLSVLDIGFC---NFTG----SIPTSIGNLTRATEIAFASNHF 147 (776)
Q Consensus 96 ~~~p~~~~~~~l~~L~~L~~L~Ls~n---~l~~----~~~~~l~~l~~L~~L~L~~n~l 147 (776)
+.--..+.. .++.=+.|++|+|+++ .+.. .+...+..-+.|+.|+++.|.+
T Consensus 112 ~~Ga~ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 112 PELLARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 321111110 0122223777777654 2332 2334455557777787776643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.0016 Score=56.38 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=43.6
Q ss_pred eEEecCCCccc-ccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcC
Q 047486 587 RAMDFSRNRFH-GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 646 (776)
Q Consensus 587 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 646 (776)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 35554432 368888888888887777778888888888888888763
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.003 Score=54.70 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=47.9
Q ss_pred CEEeCCCCcCc-ccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcce
Q 047486 611 KVLNLSHNSLT-GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 669 (776)
Q Consensus 611 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 669 (776)
..++-+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 35675543 47999999999999877888999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.01 E-value=4.4 Score=32.55 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=25.3
Q ss_pred cCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK 479 (776)
Q Consensus 433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 479 (776)
.++.+...+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344455556666666666666543 3334445566666666555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.24 E-value=23 Score=28.28 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=20.7
Q ss_pred cccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccC
Q 047486 128 PTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSG 168 (776)
Q Consensus 128 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 168 (776)
..+|.+|+.|+.+.+..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555555555555543 2324444555555555555544
No 167
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.00 E-value=16 Score=27.72 Aligned_cols=7 Identities=0% Similarity=-0.040 Sum_probs=2.6
Q ss_pred hccchhH
Q 047486 760 VEGDQQK 766 (776)
Q Consensus 760 ~~~~~~~ 766 (776)
++|.+..
T Consensus 44 ~~kFEkE 50 (79)
T 2knc_B 44 FAKFEEE 50 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!